Citrus Sinensis ID: 012261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
MLNKITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHcccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEEcHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEEEcccccccEEEccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccEEEEEccccccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEEEcccHcccccccHHHHHHHHcccccccccccccEccccccccccccccEEEEEcccccEEEEccccccccccHHHHHHccccccEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHccccHHHcccEEEEccccEcccccccc
Coil and Loop (DISEMBL)
MLNKITRLFHGYAYMSSFFSMFKVIFITLFfsrrdlplFSFVLIdlntwmpipkmtnfqirslydivpaengdkflsmlppwhvyeRACGYFIFSRGIELMYTAVRNLKDDlqryqphymisvPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFcltrnqkqpSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIgiskagvsgggslpmHIDLFYEAIGVKVQVgygltesspviaarrptcnvlgsvghpinhteikivdaetnevlpagskgivkvrgsqvmqgyfknpsatkqaldedgwlntgdigwiaphhsrgrsrrcggvlvlegrakdtivlstgenveplELEEAALRSSLIRQIVVIgqdqrrpgaiivpdKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKwtskcsfqigpihvvdepftVNFLCLAL
Flexible Loop (DISEMBL)
mlnkitrlFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGwiaphhsrgrsrrCGGVLVLegrakdtivlstgenveplELEEAALRSSLIRQIvvigqdqrrpgaiivpDKEEVLMAAKRLSIvhadaselskekTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Low Complexity Region (SEG)
MLNKITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSaarrvvaraliriSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHsrgrsrrcggVLVLEGRAKDTIVLSTGENVEPleleeaalRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered region (IsUnstruct)
****ITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA*
Disordered Region (DISOPRED)
*****TRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK******AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH****ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISEMBL)
MLNKITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISPRO)
*LNKITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNKITRLFHGYAYMSSFFSMFKVIFITLFFSRRDLPLFSFVLIDLNTWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
Q9LK39	722	Probable acyl-activating	yes	no	0.862	0.558	0.710	1e-176
Q8W471	727	Long-chain-fatty-acid--[a	no	no	0.841	0.540	0.692	1e-169
P44446	607	Putative long-chain-fatty	yes	no	0.674	0.518	0.298	2e-31
Q7TYX8	600	Long-chain-fatty-acid--Co	yes	no	0.612	0.476	0.287	2e-28
O53521	600	Long-chain-fatty-acid--Co	yes	no	0.612	0.476	0.284	1e-27
B2HGV4	600	Long-chain-fatty-acid--Co	no	no	0.633	0.493	0.283	5e-27
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.676	0.452	0.279	6e-27
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.668	0.446	0.283	9e-27
O22898	660	Long chain acyl-CoA synth	no	no	0.762	0.539	0.288	1e-26
O88813	683	Long-chain-fatty-acid--Co	yes	no	0.730	0.499	0.268	2e-26

>sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 287/404 (71%), Positives = 344/404 (85%), Gaps = 1/404 (0%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPH
Sbjct: 291 QIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPH 350

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P
Sbjct: 351 YLISVPLVYETLYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPP 410

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+E
Sbjct: 411 MYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFE 470

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIV
Sbjct: 471 AIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIV 530

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKD
Sbjct: 531 KVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKD 590

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIV 417
           TIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V
Sbjct: 591 TIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPV 650

Query: 418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
            ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 651 DSEVNELSKETITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

May be involved in the activation of fatty acids to acyl-carrier-protein.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1

 Score =  595 bits (1533), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/403 (69%), Positives = 334/403 (82%), Gaps = 10/403 (2%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI+ L   VPA+ GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+
Sbjct: 307 QIKHLSKYVPAQAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPN 366

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y++SVPLVYETLYSGIQKQI  SSA R+ +A  LI++S AY   KRIYEG CLT+ QK P
Sbjct: 367 YIVSVPLVYETLYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPP 426

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y+VA +DWLWAR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+E
Sbjct: 427 MYIVAFVDWLWARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFE 486

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV +Q GYGLTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+
Sbjct: 487 AIGVILQNGYGLTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGII 546

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG QVM+GY+KNPS TKQ L+E GW NTGD GWIAPHHS+GRSR CGGV+VLEGRAKD
Sbjct: 547 KVRGPQVMKGYYKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKD 606

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVLSTGENVEPLE+EEAA+RS +I QIVVIGQD+RR GAII+P+KEE    A+R+    
Sbjct: 607 TIVLSTGENVEPLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD--- 659

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
               E SKE   SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct: 660 ---PETSKETLKSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0002 PE=3 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 164/362 (45%), Gaps = 47/362 (12%)

Query: 71  NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRN-LKDDLQRYQPHYMISVPLVYET 129
           + D  LS LP  H++ERA   +I  RG  L Y    N ++  L   +P  M +VP  YE 
Sbjct: 225 DQDISLSFLPFSHIFERAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEK 284

Query: 130 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 189
           +Y+ +  ++  +   R+++    I +   Y         F L  N K   +L        
Sbjct: 285 IYAAVLDKVQKAPKLRQIMFHWAISVGQKY---------FDLRANNKAIPFL-------- 327

Query: 190 ARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGY 248
                  L     LA+KLV  K++  +G   K    GG  L   I LF+ AIG+ +++GY
Sbjct: 328 -------LKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGY 380

Query: 249 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 308
           G+TE++  ++          S+G  +   E+KI   E NE+L         VRG  VM+G
Sbjct: 381 GMTETTATVSCWHDFQFNPNSIGTLMPKAEVKI--GENNEIL---------VRGGMVMKG 429

Query: 309 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 368
           Y+K P  T QA  EDG+L TGD G               G L +  R K+ +  S G+ +
Sbjct: 430 YYKKPEETAQAFTEDGFLKTGDAGEFDEQ----------GNLFITDRIKELMKTSNGKYI 479

Query: 369 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEK 428
            P  +E    +   I QI +I   ++   A+IVP  + +   AK+L+I + D  EL K  
Sbjct: 480 APQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNS 539

Query: 429 TI 430
            I
Sbjct: 540 DI 541

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7TYX8|FAC15_MYCBO Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD15 PE=3 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 51/337 (15%)

Query: 71  NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYET 129
            G++ L  LP  HV  RA     F   + + +T+ ++NL   L  ++P  ++SVP V+E 
Sbjct: 223 KGERLLVFLPLAHVLARAISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEK 282

Query: 130 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 189
           +Y+  ++    +   R     A   + ++           C   ++  P  L        
Sbjct: 283 VYNTAEQNAANAGKGRIFAIAAQTAVDWSEA---------C---DRGGPGLL-------- 322

Query: 190 ARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGY 248
                  L   H + ++LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GY
Sbjct: 323 -------LRAKHAVFDRLVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGY 375

Query: 249 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 308
           GL+E+S  +A  +     +G+VG P+    ++I D            G + VRG  V  G
Sbjct: 376 GLSETSGGVAISQFNDLKIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSG 424

Query: 309 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 368
           Y++N  AT +A   DGW  TGD+G +             G L + GR K+ IV + G+NV
Sbjct: 425 YWRNEQATTEAF-TDGWFKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNV 473

Query: 369 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 405
            P  LE+      LI Q VV+G  +   GA+I  D E
Sbjct: 474 APAVLEDQLRAHPLISQAVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium bovis (taxid: 1765)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53521|FAC15_MYCTU Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium tuberculosis GN=fadD15 PE=1 SV=3

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 51/337 (15%)

Query: 71  NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYET 129
            G++ L  LP  HV  RA     F   + + +T+ ++NL   L  ++P  ++SVP V+E 
Sbjct: 223 KGERLLVFLPLAHVLARAISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEK 282

Query: 130 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 189
           +Y+  ++    +   R     A   + ++           C   ++  P  L        
Sbjct: 283 VYNTAEQNAANAGKGRIFAIAAQTAVDWSEA---------C---DRGGPGLL-------- 322

Query: 190 ARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGY 248
                  L   H + ++LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GY
Sbjct: 323 -------LRAKHAVFDRLVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGY 375

Query: 249 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 308
           GL+ +S  +A  +     +G+VG P+    ++I D            G + VRG  V  G
Sbjct: 376 GLSGTSGGVAISQFNDLKIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSG 424

Query: 309 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 368
           Y++N  AT +A   DGW  TGD+G +             G L + GR K+ IV + G+NV
Sbjct: 425 YWRNEQATTEAF-TDGWFKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNV 473

Query: 369 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 405
            P  LE+      LI Q VV+G  +   GA+I  D E
Sbjct: 474 APAVLEDQLRAHPLISQAVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|B2HGV4|FAC15_MYCMM Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 159/353 (45%), Gaps = 57/353 (16%)

Query: 59  QIRSLYDIVPA--ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRY 115
           +IR   + +P     G + L  LP  HV  RA     F+  + + +T+ ++NL      +
Sbjct: 209 EIRGTQECLPTLLTPGQRLLVFLPLAHVLARALTLSAFASKVTVGFTSDIKNLLPLFAVF 268

Query: 116 QPHYMISVPLVYETLYSGIQKQIFTSS--AARRVVARALIRISFAYTAFKRIYEGFCLTR 173
           +P  ++SVP V+E +Y+  ++        A  ++ A+  +  S A+              
Sbjct: 269 KPTVVVSVPRVFEKVYNTAEQNASNDGKGAIFKLAAQTAVDWSRAW-------------- 314

Query: 174 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMH 232
           +  +P  L               L   H L ++LVY K+++A+G    A VSGG  L   
Sbjct: 315 DDGRPGLL---------------LRAKHALFDRLVYHKLRAALGGDCHAAVSGGAPLGAR 359

Query: 233 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA 292
           +  FY  +G+ +  GYGLTE+S  +   +     +G+VG  +    ++I D         
Sbjct: 360 LGHFYRGVGLTIYEGYGLTETSAAVTVNQIDALKIGTVGKLVPGNSLRIAD--------- 410

Query: 293 GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 352
              G + VRG  V  GY++N  AT +A   DGW  TGD+G I             G L +
Sbjct: 411 --DGELLVRGGVVFSGYWRNEQATDEAF-TDGWFRTGDLGAIDDD----------GFLSI 457

Query: 353 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 405
            GR K+ IV + G+NV P  LE+      LI Q +V+G  +   GA+I  D E
Sbjct: 458 TGRKKELIVTAGGKNVAPAVLEDQLRAHPLISQAMVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 53/369 (14%)

Query: 69  AENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLV 126
           A   D  +S LP  H++E      +   G ++ +    +R L DDL+  QP     VP +
Sbjct: 311 ASTDDVLISFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRL 370

Query: 127 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186
              ++  I  Q                    A T+ KR    F   R + +    +   +
Sbjct: 371 LNRMFDRIFGQ--------------------ANTSLKRWLLDFASKRKEAELRSGIVRNN 410

Query: 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVK 243
            LW               +KL++ KIQS++G  K  +   G+ P+    +     A+G +
Sbjct: 411 SLW---------------DKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQ 454

Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
              GYG TE +       P     G VG P+    +K+VD E    L +  +G V V+G+
Sbjct: 455 FYEGYGQTECTAGCCLSLPGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGA 514

Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 363
            V +GY K+P+ T +ALD+DGWL+TGDIG   P+          G L +  R K    L+
Sbjct: 515 NVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLA 564

Query: 364 TGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADAS 422
            GE + P ++E   LRS  + Q+ V G+  Q    A++VPD E +   A++  +      
Sbjct: 565 QGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFE 623

Query: 423 ELSKEKTIS 431
           EL + K I+
Sbjct: 624 ELCRNKDIN 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  121 bits (304), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 157/363 (43%), Gaps = 51/363 (14%)

Query: 73  DKFLSMLPPWHVYERACGYFIFSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLVYETL 130
           D  +S LP  H++ER     +   G ++ +    +R L DDL+  QP     VP +   +
Sbjct: 314 DTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRM 373

Query: 131 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190
           +  I  Q                    A T  KR    F   R + +    +   + LW 
Sbjct: 374 FDRIFGQ--------------------ANTTLKRWLLDFASKRKEAELRSGIIRNNSLWD 413

Query: 191 RIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGY 248
           R               L++ K+QS++G   +  V+G   +   +  F  A +G +   GY
Sbjct: 414 R---------------LIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGY 458

Query: 249 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 308
           G TE +       P     G VG P+    IK+VD E    + A  +G V V+G  V QG
Sbjct: 459 GQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQG 518

Query: 309 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 368
           Y K+P+ T +ALD+DGWL+TGDIG   P+          G L +  R K    L+ GE +
Sbjct: 519 YLKDPAKTAEALDKDGWLHTGDIGKWLPN----------GTLKIIDRKKHIFKLAQGEYI 568

Query: 369 EPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 427
            P ++E   +RS  + Q+ V G+  Q    AI+VPD E +   A++         EL + 
Sbjct: 569 APEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRN 627

Query: 428 KTI 430
           K +
Sbjct: 628 KDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 186/419 (44%), Gaps = 63/419 (15%)

Query: 55  MTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--TAVRNLKDDL 112
           M  F+ +  +D       D +LS LP  H+ +R    + F +G  + Y    +  L+DD+
Sbjct: 256 MDQFEDKMTHD-------DVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNLNVLRDDI 308

Query: 113 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 172
           Q  +P Y+  VP V+E ++ GIQK +   +  RR +  AL +   A+    R Y     +
Sbjct: 309 QELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAW--LNRGY-----S 361

Query: 173 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPM 231
            ++  P                        +A+ + ++KI+  +G   +  VSGG  L  
Sbjct: 362 HSKASP------------------------MADFIAFRKIRDKLGGRIRLLVSGGAPLSP 397

Query: 232 HIDLFYEAIGVKVQV-GYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNE 288
            I+ F         V GYGLTE+    A   P   C +LG+VG P  + EI++ +     
Sbjct: 398 EIEEFLRVTCCCFVVQGYGLTETLGGTALGFPDEMC-MLGTVGIPAVYNEIRLEEVSEMG 456

Query: 289 VLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 346
             P G    G + +RG  +  GY+KNP  T++ + +DGW +TGDIG I P+         
Sbjct: 457 YDPLGENPAGEICIRGQCMFSGYYKNPELTEEVM-KDGWFHTGDIGEILPN--------- 506

Query: 347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKE 405
            GVL +  R K+ I LS GE V    LE    ++S+++ I V G   +    A++VP+ E
Sbjct: 507 -GVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNSVVQDIWVYGDSFKSMLVAVVVPNPE 565

Query: 406 EVLMAAKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV 460
            V   AK L          S    KE  IS L     K   +    I  + V  +PF V
Sbjct: 566 TVNRWAKDLGFTKPFEELCSFPELKEHIISELKSTAEKNKLRKFEYIKAVTVETKPFDV 624

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 179/399 (44%), Gaps = 58/399 (14%)

Query: 73  DKFLSMLPPWHVYERACGYFIFSRG--IELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 130
           D  +S LP  H++ER     IFS G  I      +R L DD++  +P    +VP +   +
Sbjct: 299 DVTISYLPLAHMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRV 358

Query: 131 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190
           Y  +Q +      A+  + + L+ ++   + F  +  G  + RN             LW 
Sbjct: 359 YDKVQNE------AKTPLKKFLLNLAI-ISKFNEVRNGI-IRRNS------------LW- 397

Query: 191 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVG 247
                         +KLV+ KIQS++G  K  +   G+ P+    +  F  A+G  V   
Sbjct: 398 --------------DKLVFSKIQSSLG-GKVRLMITGAAPISTPVLTFFRAAMGCWVFEA 442

Query: 248 YGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ 307
           YG TE +   +   P     G VG P++   +K+ D          ++G + ++G+ V +
Sbjct: 443 YGQTECTAGCSITSPGDWTAGHVGTPVSCNFVKLEDVADMNYFSVNNEGEICIKGNNVFK 502

Query: 308 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 367
           GY K+P  T++ LD+DGWL+TGDIG   P+          G L +  R K+   L+ GE 
Sbjct: 503 GYLKDPEKTQEVLDKDGWLHTGDIGRWLPN----------GTLKIIDRKKNIFKLAQGEY 552

Query: 368 VEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPDKEEVLMAAKRLSIVHADASELSK 426
           + P ++E    RS  I Q+ V G+  R     ++VPD E +   A ++  V     EL +
Sbjct: 553 IAPEKIENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIG-VKGSFEELCQ 611

Query: 427 EKTI-SLLYGELRKWTSKCSF----QIGPIHVVDEPFTV 460
            + +   +  +L+K   +       Q+  I V  EPF++
Sbjct: 612 NQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSI 650

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
296089272	730	unnamed protein product [Vitis vinifera]	0.862	0.552	0.751	1e-178
225439252	691	PREDICTED: long-chain-fatty-acid--CoA li	0.862	0.583	0.751	1e-177
224129204	706	predicted protein [Populus trichocarpa]	0.862	0.570	0.739	1e-176
356512427	733	PREDICTED: putative acyl-CoA synthetase	0.862	0.549	0.727	1e-175
22331297	722	AMP-dependent synthetase and ligase fami	0.862	0.558	0.710	1e-174
20799733	722	acyl-CoA synthetase-like protein [Arabid	0.862	0.558	0.710	1e-174
297835432	722	hypothetical protein ARALYDRAFT_898924 [	0.862	0.558	0.705	1e-172
224055821	694	predicted protein [Populus trichocarpa]	0.862	0.580	0.717	1e-170
449527657	672	PREDICTED: probable acyl-activating enzy	0.862	0.599	0.689	1e-170
449441378	731	PREDICTED: probable acyl-activating enzy	0.862	0.551	0.689	1e-170

>gi|296089272|emb|CBI39044.3| unnamed protein product [Vitis vinifera]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/403 (75%), Positives = 345/403 (85%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI++L+DIVPAE GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP 
Sbjct: 300 QIKNLWDIVPAEPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQ 359

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ 
Sbjct: 360 YLISVPLVYETLYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQY 419

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           SY+ ++ DWLWA+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+E
Sbjct: 420 SYIASIFDWLWAKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFE 479

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AI +KVQ GYGLTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIV
Sbjct: 480 AIDIKVQNGYGLTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIV 539

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KV+G  VM+GY+KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKD
Sbjct: 540 KVKGPHVMKGYYKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKD 599

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVLSTGENVEP ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++
Sbjct: 600 TIVLSTGENVEPTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILN 659

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           A+ SELSKEK   LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 660 ANTSELSKEKITGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439252|ref|XP_002263501.1| PREDICTED: long-chain-fatty-acid--CoA ligase FadD15-like [Vitis vinifera]

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/403 (75%), Positives = 345/403 (85%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI++L+DIVPAE GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP 
Sbjct: 261 QIKNLWDIVPAEPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQ 320

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ 
Sbjct: 321 YLISVPLVYETLYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQY 380

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           SY+ ++ DWLWA+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+E
Sbjct: 381 SYIASIFDWLWAKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFE 440

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AI +KVQ GYGLTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIV
Sbjct: 441 AIDIKVQNGYGLTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIV 500

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KV+G  VM+GY+KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKD
Sbjct: 501 KVKGPHVMKGYYKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKD 560

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVLSTGENVEP ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++
Sbjct: 561 TIVLSTGENVEPTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILN 620

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           A+ SELSKEK   LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 621 ANTSELSKEKITGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129204|ref|XP_002328916.1| predicted protein [Populus trichocarpa] gi|222839346|gb|EEE77683.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/403 (73%), Positives = 346/403 (85%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI +L+D+VPA+  D+FLSMLPPWH YERA  YFIF+ G E +YT VRNLK DLQ+YQPH
Sbjct: 276 QINNLWDVVPAQPADRFLSMLPPWHAYERAAEYFIFTHGTEQVYTTVRNLKVDLQQYQPH 335

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+I+VPLV+ETLYSGIQKQ+ TSSA R+++A   I+IS  Y   KRIYEG  L R++K+P
Sbjct: 336 YLITVPLVFETLYSGIQKQLSTSSALRKILAFMFIKISLTYMEMKRIYEGTYLVRSRKEP 395

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y V+++DWLWARII AIL P+H+LA+KLVY KI SAIGISKAGVSGGGSLP H+D F+E
Sbjct: 396 PYFVSMLDWLWARIIAAILLPVHMLAKKLVYSKIHSAIGISKAGVSGGGSLPSHVDKFFE 455

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV VQ GYG+TESSPV AARRP+ NVLGS+G PI HTE KIVDAET E LP GSKGIV
Sbjct: 456 AIGVVVQNGYGMTESSPVTAARRPSNNVLGSIGLPIRHTEFKIVDAETGEALPHGSKGIV 515

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG QVM+GY+KNP ATKQA+DEDGWLN+GDIGWIAP+HSRGRSR CGGV+VLEGRAKD
Sbjct: 516 KVRGPQVMKGYYKNPLATKQAVDEDGWLNSGDIGWIAPYHSRGRSRHCGGVIVLEGRAKD 575

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVL TGENVEPLELEEAA+RSSLI+QIVVIGQDQRR GAI+VP+K+EVL AAK+ SIV 
Sbjct: 576 TIVLLTGENVEPLELEEAAMRSSLIQQIVVIGQDQRRLGAIVVPNKDEVLEAAKKWSIVD 635

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
            DA+ELSK++  SLL  ELRKWTS CSFQIGPI V+DEPFT++
Sbjct: 636 PDATELSKKQITSLLNEELRKWTSGCSFQIGPILVIDEPFTID 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512427|ref|XP_003524920.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/403 (72%), Positives = 345/403 (85%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI++L+DIVPAE GD+FLSMLPPWH YERAC YFIF+ GIE +YT VRNLKDDLQRYQP 
Sbjct: 303 QIKNLWDIVPAEAGDRFLSMLPPWHAYERACEYFIFTCGIEQVYTTVRNLKDDLQRYQPQ 362

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLV+ETLYSGI KQI T S  R++VA   IR S AY  +KRIYEG CLT+N+KQ 
Sbjct: 363 YLISVPLVFETLYSGIMKQISTGSVVRKLVALTFIRSSIAYMEYKRIYEGKCLTKNKKQA 422

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           SY  +++DWLWAR I  IL PLH+LA+KLVY KI SAIGISKAG+SGGGSLP  +D F+E
Sbjct: 423 SYAYSMLDWLWARTIATILLPLHILAKKLVYSKIHSAIGISKAGISGGGSLPWEVDKFFE 482

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGVKVQ GYGLTE+SPVIAARRP CNV+GSVGHPI HTE KIVD+ET+EVLP GSKGI+
Sbjct: 483 AIGVKVQNGYGLTETSPVIAARRPRCNVIGSVGHPIRHTEFKIVDSETDEVLPPGSKGIL 542

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG QVM+GYFKN  AT QALD DGWLNTGDIGWI PHHS GRSR   GV+V+EGRAKD
Sbjct: 543 KVRGPQVMEGYFKNSLATNQALDGDGWLNTGDIGWIVPHHSTGRSRNSSGVIVVEGRAKD 602

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVLSTGENVEPLELEEAA+RSS+I+QIVV+GQD+RR GA+IVP+KEEVL  A++LSI+ 
Sbjct: 603 TIVLSTGENVEPLELEEAAMRSSIIQQIVVVGQDKRRLGAVIVPNKEEVLKVARKLSIID 662

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           +++S++S+EK  SL+Y EL+ WTS+  FQIGPI +V+EPFT++
Sbjct: 663 SNSSDVSEEKVTSLIYKELKTWTSESPFQIGPILLVNEPFTID 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331297|ref|NP_189021.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|75311239|sp|Q9LK39.1|AAE16_ARATH RecName: Full=Probable acyl-activating enzyme 16, chloroplastic; Flags: Precursor gi|9293952|dbj|BAB01855.1| long-chain-fatty-acid CoA ligase [Arabidopsis thaliana] gi|332643293|gb|AEE76814.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 287/404 (71%), Positives = 344/404 (85%), Gaps = 1/404 (0%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPH
Sbjct: 291 QIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPH 350

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P
Sbjct: 351 YLISVPLVYETLYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPP 410

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+E
Sbjct: 411 MYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFE 470

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIV
Sbjct: 471 AIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIV 530

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKD
Sbjct: 531 KVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKD 590

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIV 417
           TIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V
Sbjct: 591 TIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPV 650

Query: 418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
            ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 651 DSEVNELSKETITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20799733|gb|AAM28629.1|AF503771_1 acyl-CoA synthetase-like protein [Arabidopsis thaliana]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 287/404 (71%), Positives = 344/404 (85%), Gaps = 1/404 (0%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPH
Sbjct: 291 QIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPH 350

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P
Sbjct: 351 YLISVPLVYETLYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPP 410

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+E
Sbjct: 411 MYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFE 470

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIV
Sbjct: 471 AIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIV 530

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKD
Sbjct: 531 KVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKD 590

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIV 417
           TIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V
Sbjct: 591 TIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPV 650

Query: 418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
            ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 651 DSEVNELSKETITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835432|ref|XP_002885598.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata] gi|297331438|gb|EFH61857.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/404 (70%), Positives = 343/404 (84%), Gaps = 1/404 (0%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LK DL++YQPH
Sbjct: 291 QIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKGDLKQYQPH 350

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI TSS  R+ +A  LI++S AYT  KRIYEG CLT+NQK P
Sbjct: 351 YLISVPLVYETLYSGIQKQISTSSPVRKFLALTLIKVSLAYTEMKRIYEGLCLTKNQKPP 410

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
            Y+V+L+DWLWAR++  +LWPLH+LAEKLV+KKI+S+IGI+KAGVSGGGSLPMH+D F+E
Sbjct: 411 LYIVSLVDWLWARVVAFVLWPLHILAEKLVHKKIRSSIGITKAGVSGGGSLPMHVDKFFE 470

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AI V VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIV
Sbjct: 471 AISVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIV 530

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           KVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKD
Sbjct: 531 KVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKD 590

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIV 417
           TIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V
Sbjct: 591 TIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPV 650

Query: 418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
             + +ELSKE+  S++Y EL+KWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 651 DPEVNELSKERITSMVYEELKKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055821|ref|XP_002298670.1| predicted protein [Populus trichocarpa] gi|222845928|gb|EEE83475.1| predicted protein [Populus trichocarpa]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/403 (71%), Positives = 342/403 (84%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI + ++IVPA+  D+FLSMLPPWH YERAC YFIF+ G E +YT VRN K DLQ+YQPH
Sbjct: 264 QINNFWEIVPAQPADRFLSMLPPWHAYERACEYFIFANGAEQVYTTVRNFKVDLQQYQPH 323

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLV+ETLYSGIQKQI  SS  R+++A   I+IS AY   KRIYEG  LTR+Q + 
Sbjct: 324 YLISVPLVFETLYSGIQKQISKSSTLRKLLAFTFIKISLAYMEMKRIYEGTYLTRSQNEQ 383

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           SY V+++ WL ARI  AIL P+H+LAEKLVY KIQSAIGI KAGVSGGGSLP H+D F+E
Sbjct: 384 SYFVSILGWLRARIFAAILLPVHMLAEKLVYSKIQSAIGIRKAGVSGGGSLPAHVDKFFE 443

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIGV +  GYG+TESSPV+AAR+ + NVLGSVGHPI HTE KIVDAET + LP GSKGIV
Sbjct: 444 AIGVVLLNGYGMTESSPVLAARQLSNNVLGSVGHPIRHTEFKIVDAETGKSLPYGSKGIV 503

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           +VRG QVM+GY+KNP ATKQA+DEDGWLNTGD+GWIAP+HSRG+S RCGG++VLEGRAKD
Sbjct: 504 RVRGPQVMKGYYKNPLATKQAVDEDGWLNTGDLGWIAPYHSRGKSCRCGGIIVLEGRAKD 563

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVLSTGENVEPLELEEAA++SSLI+QIVVIGQDQRR GAI+VP+KEEVL  AK+LSIV 
Sbjct: 564 TIVLSTGENVEPLELEEAAMKSSLIQQIVVIGQDQRRLGAIVVPNKEEVLEVAKKLSIVD 623

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           ADA+ELSK++  +LL  ELRKWTS+ SFQIGP+ V+DE FT++
Sbjct: 624 ADATELSKKQIANLLDKELRKWTSEASFQIGPVLVIDESFTID 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527657|ref|XP_004170826.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like, partial [Cucumis sativus]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 278/403 (68%), Positives = 340/403 (84%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI++L+DIVPA+ GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP 
Sbjct: 242 QIKNLWDIVPAKVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPD 301

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP
Sbjct: 302 YLISVPLVYETLYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQP 361

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           ++LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+E
Sbjct: 362 THLVSALDWLFARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFE 421

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIG+ VQ GYGLTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV
Sbjct: 422 AIGITVQNGYGLTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIV 481

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           +VRG QVM+GY+KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKD
Sbjct: 482 EVRGPQVMKGYYKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKD 541

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVL TGENVEP  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   
Sbjct: 542 TIVLLTGENVEPTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAED 601

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           +  S++S E   +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 602 SSTSDVSNETLTNLIYSEVRKWTSECPFQIGPILIVNEPFTID 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441378|ref|XP_004138459.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Cucumis sativus]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 278/403 (68%), Positives = 340/403 (84%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
           QI++L+DIVPA+ GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP 
Sbjct: 301 QIKNLWDIVPAKVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPD 360

Query: 119 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP 178
           Y+ISVPLVYETLYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP
Sbjct: 361 YLISVPLVYETLYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQP 420

Query: 179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
           ++LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+E
Sbjct: 421 THLVSALDWLFARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFE 480

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           AIG+ VQ GYGLTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV
Sbjct: 481 AIGITVQNGYGLTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIV 540

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
           +VRG QVM+GY+KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKD
Sbjct: 541 EVRGPQVMKGYYKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKD 600

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
           TIVL TGENVEP  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   
Sbjct: 601 TIVLLTGENVEPTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAED 660

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
           +  S++S E   +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 661 SSTSDVSNETLTNLIYSEVRKWTSECPFQIGPILIVNEPFTID 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
TAIR|locus:2095173	722	AAE16 "acyl activating enzyme	0.862	0.558	0.663	3.5e-146
TAIR|locus:2129371	727	AAE15 "acyl-activating enzyme	0.841	0.540	0.645	1.5e-140
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.524	0.348	0.303	3e-24
UNIPROTKB|Q9KP89	601	VC_2484 "Long-chain-fatty-acid	0.488	0.379	0.303	2.5e-23
TIGR_CMR|VC_2484	601	VC_2484 "long-chain-fatty-acid	0.488	0.379	0.303	2.5e-23
UNIPROTKB|Q5W4S3	402	FACL6 "Uncharacterized protein	0.546	0.634	0.303	2.7e-23
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.460	0.307	0.339	1.1e-22
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.460	0.307	0.347	1.2e-22
RGD|69402	683	Acsl5 "acyl-CoA synthetase lon	0.524	0.358	0.298	1.5e-22
MGI|MGI:1919129	683	Acsl5 "acyl-CoA synthetase lon	0.524	0.358	0.294	1.7e-22

TAIR|locus:2095173 AAE16 "acyl activating enzyme 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 268/404 (66%), Positives = 319/404 (78%)

Query:    59 QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
             QIR+L D VPAE G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPH
Sbjct:   291 QIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPH 350

Query:   119 YMISVPLVYETLYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQP 178
             Y+ISVPLVYETLYSGIQKQI  SS             S AYT  KR+YEG CLT+NQK P
Sbjct:   351 YLISVPLVYETLYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPP 410

Query:   179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
              Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+E
Sbjct:   411 MYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFE 470

Query:   239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
             AIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIV
Sbjct:   471 AIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIV 530

Query:   299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKD 358
             KVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GWI P H          V+VLEGRAKD
Sbjct:   531 KVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKD 590

Query:   359 TIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIV 417
             TIVLSTGENVEP        RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V
Sbjct:   591 TIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPV 650

Query:   418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
              ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct:   651 DSEVNELSKETITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2129371 AAE15 "acyl-activating enzyme 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1359 (483.5 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
 Identities = 260/403 (64%), Positives = 308/403 (76%)

Query:    59 QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPH 118
             QI+ L   VPA+ GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+
Sbjct:   307 QIKHLSKYVPAQAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPN 366

Query:   119 YMISVPLVYETLYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQP 178
             Y++SVPLVYETLYSGIQKQI  SS             S AY   KRIYEG CLT+ QK P
Sbjct:   367 YIVSVPLVYETLYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPP 426

Query:   179 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE 238
              Y+VA +DWLWAR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+E
Sbjct:   427 MYIVAFVDWLWARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFE 486

Query:   239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
             AIGV +Q GYGLTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+
Sbjct:   487 AIGVILQNGYGLTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGII 546

Query:   299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKD 358
             KVRG QVM+GY+KNPS TKQ L+E GW NTGD GWIAPHH          V+VLEGRAKD
Sbjct:   547 KVRGPQVMKGYYKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKD 606

Query:   359 TIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
             TIVLSTGENVEP        RS +I QIVVIGQD+RR GAII+P+KEE    A+R+    
Sbjct:   607 TIVLSTGENVEPLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD--- 659

Query:   419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 461
                 E SKE   SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct:   660 ---PETSKETLKSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008922 "long-chain fatty acid [acyl-carrier-protein

GO:0009536 "plastid" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 80/264 (30%), Positives = 123/264 (46%)

Query:   205 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP 262
             +KLV+KK+  A G + +  V G   L  ++  F   A+G  V  GYG TE +  I     
Sbjct:   420 DKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQ 479

Query:   263 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 322
               +V   VG P++   +K+VD    E     + G V VRGS V  GY+K+P  T +A+D 
Sbjct:   480 GDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDS 539

Query:   323 DGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSL 382
             +GW +TGD+G   P+            L +  R K    LS GE + P         S  
Sbjct:   540 EGWHHTGDVGMWLPN----------GTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQY 589

Query:   383 IRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKW 440
             + Q+ V G+  +    A++VPD + VL      + V    S L   K +  L+  ++  W
Sbjct:   590 VNQVYVYGESLKSCIIAVVVPDTD-VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNW 648

Query:   441 TSKC---SF-QIGPIHVVDEPFTV 460
               +    SF Q+  I++  +PF+V
Sbjct:   649 GKQSGLKSFEQVKDIYLHPDPFSV 672

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9KP89 VC_2484 "Long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 247 (92.0 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   201 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 258
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   259 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 318
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   319 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   379 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 430
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   431 SLLYGELRKWTSKCSFQIGP 450
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|VC_2484 VC_2484 "long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 247 (92.0 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   201 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 258
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   259 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 318
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   319 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   379 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 430
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   431 SLLYGELRKWTSKCSFQIGP 450
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

UNIPROTKB|Q5W4S3 FACL6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
 Identities = 81/267 (30%), Positives = 124/267 (46%)

Query:   203 LAEKLVYKKIQSAIG-ISKAGVSGGG-SLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 260
             L +KL + KIQ+++G   +  V+G   + P  +     A+G +V  GYG TE +      
Sbjct:   106 LWDKLFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFT 165

Query:   261 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 320
              P     G VG P+    IK+ DAE      +  +G + V+G  V +GY K+   T +AL
Sbjct:   166 TPGDWTSGHVGAPLPCNLIKLKDAEELNYFASKGEGEICVKGPNVFKGYLKDEERTSEAL 225

Query:   321 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 379
             D++GWL+TGDIG W+ P            + +++ R K    L+ GE + P        R
Sbjct:   226 DQEGWLHTGDIGKWL-PVRIQMSGACNGTLKIID-RKKHIFKLAQGEYIAPEKIENIYIR 283

Query:   380 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-- 436
             S  + Q+ V G   Q     I+VPD E +   AK+         EL + K +     E  
Sbjct:   284 SDPVAQVYVHGDSLQAFLVGIVVPDAEAMPGWAKKRGF-DGTYEELCRNKELQKAIMEDM 342

Query:   437 --LRKWTSKCSF-QIGPIHVVDEPFTV 460
               L K +   SF Q+  IH+  + F+V
Sbjct:   343 VRLGKESGLHSFEQVKAIHIHSDMFSV 369

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 79/233 (33%), Positives = 116/233 (49%)

Query:   203 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 259
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   + 
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSL 470

Query:   260 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 319
               P     G VG P+  + IK+VD E    L A  +G V V+G  V QGY K+P+ T +A
Sbjct:   471 TVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEA 530

Query:   320 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   379 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 430
             RS  + Q+ V G+  Q    AI+VPD E +   A++   V     EL + K +
Sbjct:   580 RSEPVAQVFVHGESLQAFLIAIVVPDVETLGHWAQKRGFV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 81/233 (34%), Positives = 115/233 (49%)

Query:   203 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 259
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCL 470

Query:   260 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 319
                     G VG P+  + IK+VD E    L A  +G V V+GS V QGY K+P  T +A
Sbjct:   471 TVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDPVKTAEA 530

Query:   320 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYQ 579

Query:   379 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 430
             RS  I Q+ V G+  Q    AI+VPD E +   A++  IV     EL + K +
Sbjct:   580 RSEPIAQVFVHGESLQAFLIAIVVPDVETLGTWAQKRGIV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

RGD|69402 Acsl5 "acyl-CoA synthetase long-chain family member 5" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
 Identities = 80/268 (29%), Positives = 130/268 (48%)

Query:   203 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 259
             L +KLV+ KIQS++G  K  +   G+ P+    +  F  A+G  V   YG TE +   + 
Sbjct:   396 LWDKLVFSKIQSSLG-GKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTAGCSI 454

Query:   260 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 319
               P     G VG P++   +K+ D          ++G + ++G+ V +GY K+P  T++ 
Sbjct:   455 TSPGDWTAGHVGTPVSCNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDPEKTQEV 514

Query:   320 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             LD+DGWL+TGDIG W+ P+            L +  R K+   L+ GE + P        
Sbjct:   515 LDKDGWLHTGDIGRWL-PN----------GTLKIIDRKKNIFKLAQGEYIAPEKIENVYS 563

Query:   379 RSSLIRQIVVIGQDQRR-PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGE 436
             RS  I Q+ V G+  R     ++VPD E +   A ++  V     EL + + +   +  +
Sbjct:   564 RSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAKIG-VKGSFEELCQNQCVKKAILED 622

Query:   437 LRKWTSKC---SF-QIGPIHVVDEPFTV 460
             L+K   +    SF Q+  I V  EPF++
Sbjct:   623 LQKVGKEGGLKSFEQVKSIFVHPEPFSI 650

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0007584 "response to nutrient" evidence=IEP

GO:0008654 "phospholipid biosynthetic process" evidence=IGI

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=IDA

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=IDA

GO:0015908 "fatty acid transport" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=IGI

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0070723 "response to cholesterol" evidence=IEP

MGI|MGI:1919129 Acsl5 "acyl-CoA synthetase long-chain family member 5" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 79/268 (29%), Positives = 128/268 (47%)

Query:   203 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 259
             L +KLV+ KIQ ++G  K  +   G+ P+    +  F  A+G  V   YG TE +   + 
Sbjct:   396 LWDKLVFSKIQGSLG-GKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSI 454

Query:   260 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 319
               P     G VG P+    +K+ D          ++G + ++G+ V +GY K+P  T++ 
Sbjct:   455 TSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDPEKTQEV 514

Query:   320 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 378
             LD+DGWL+TGDIG W+ P+            L +  R K+   L+ GE + P        
Sbjct:   515 LDKDGWLHTGDIGRWL-PN----------GTLKIVDRKKNIFKLAQGEYIAPEKIENVYS 563

Query:   379 RSSLIRQIVVIGQDQRR-PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGE 436
             RS  + Q+ V G+  R     ++VPD + +   A ++  V     EL K + +   +  +
Sbjct:   564 RSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIG-VKGSFEELCKNQCVKEAILED 622

Query:   437 LRKWTSKC---SF-QIGPIHVVDEPFTV 460
             L+K   +    SF Q+  I V  EPFT+
Sbjct:   623 LQKIGKEGGLKSFEQVKSIFVHPEPFTI 650

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=ISO

GO:0010747 "positive regulation of plasma membrane long-chain fatty acid transport" evidence=ISO

GO:0010867 "positive regulation of triglyceride biosynthetic process" evidence=ISO

GO:0015908 "fatty acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0032000 "positive regulation of fatty acid beta-oxidation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK39	AAE16_ARATH	6, ., 2, ., 1, ., -	0.7103	0.8629	0.5581	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	467
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-99
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-96
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-51
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-40
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	7e-37
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	8e-37
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-35
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-34
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	5e-34
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-34
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-33
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-32
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-31
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-30
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-29
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-29
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-29
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-28
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-27
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	6e-27
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-26
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-26
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-26
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	5e-25
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-23
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	6e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	7e-22
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-21
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-21
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	9e-21
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-20
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	9e-20
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-19
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-19
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	7e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-17
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-17
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-16
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-16
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-16
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	6e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-15
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-15
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-15
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-15
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	5e-15
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-15
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-14
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	1e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-13
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-12
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	4e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	4e-12
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-11
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-11
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	6e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	7e-11
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-10
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-09
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	5e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	8e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-08
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	6e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	7e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	7e-04
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	8e-04
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	0.004
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	0.004

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  309 bits (794), Expect = 3e-99
 Identities = 126/410 (30%), Positives = 202/410 (49%), Gaps = 57/410 (13%)

Query: 58  FQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIF--SRGIELMYTAVRNLKDDLQR 114
            Q+  + +++P    GD+ LS LP  H++ERA    +        L     R L +DL+ 
Sbjct: 218 AQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKE 277

Query: 115 YQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 174
            +P  MI VP V+E +Y GI +++  + A RR + R  +++++   +             
Sbjct: 278 VRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS------------- 324

Query: 175 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHI 233
                            ++        L+A++LV++KI+ A+G   +  +SGG  L   +
Sbjct: 325 ---------------RALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPEL 369

Query: 234 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 293
             F+ ++G+ +  GYGLTE+S V++   P   VLG+VG P+   E+KI D          
Sbjct: 370 LHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD---------- 419

Query: 294 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 353
             G + VRG  VM+GY+KNP AT +A  EDGW  TGD+G +             G LV+ 
Sbjct: 420 -DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----------DGYLVIT 468

Query: 354 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKR 413
           GR K+ I LS G+N+ P  +E    +S LI QI V+G D++   A+IVPD + +   A+ 
Sbjct: 469 GRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAES 528

Query: 414 LSIV-HADASELSK-EKTISLLYGELRK-WTSKCSF-QIGPIHVVDEPFT 459
           L+ V  A   EL++  K + L+   + K       F QI    ++ + FT
Sbjct: 529 LNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFT 578

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  298 bits (765), Expect = 1e-96
 Identities = 118/410 (28%), Positives = 181/410 (44%), Gaps = 91/410 (22%)

Query: 58  FQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTA-VRNLKDDLQRY 115
            Q  +L +++P   GD+ LS LP  HV+E+  G Y   S G  + +      L +DL+  
Sbjct: 115 AQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETLLEDLREV 174

Query: 116 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ 175
           +P    +VP V+E +Y+GI+ +          VA A           KR           
Sbjct: 175 RPTVFFAVPRVWEKIYAGIEAK----------VAAA--------GPLKR----------- 205

Query: 176 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL 235
                   L  W       A+                    G  +  VSGG  LP  +  
Sbjct: 206 -------KLFRW-------ALG------------------GGRLRFAVSGGAPLPPEVLE 233

Query: 236 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 295
           F+ A+G+ +  GYGLTE+S V    RP    +G+VG P+   E++I +            
Sbjct: 234 FFRALGIPILEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAE-----------D 282

Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           G + VRG  VM+GY+KNP AT +ALDEDGWL+TGDIG +             G LV+  R
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLD----------EDGFLVITDR 332

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 415
            KD IV + G+N+ P  +E A   S  I Q VV+G D+    A+IV D E +   A++  
Sbjct: 333 KKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVLDPEALEKWAEQHG 392

Query: 416 IVHADASELSKEKTISLLYGE-----LRKWTSKCSFQIGPIHVVDEPFTV 460
           +     ++L+++  +  L  +       +       QI    ++ + F++
Sbjct: 393 LPFTTYADLAEDPEVRALIRKEVEEANARLAR--VEQIKKFVLLPKEFSI 440

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  182 bits (464), Expect = 2e-51
 Identities = 118/404 (29%), Positives = 169/404 (41%), Gaps = 63/404 (15%)

Query: 73  DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETL 130
           D ++S LP  H++ER         G  + Y +   R LK D++  +P   + VP V + +
Sbjct: 155 DVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVFVGVPRVLDRI 214

Query: 131 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190
           Y GI  ++      +R +       +FAY  +K       L R     S           
Sbjct: 215 YKGILAKVNAKGGLKRTL------FNFAY-NYKL----AALRRGHGYAS----------- 252

Query: 191 RIICAILWPLHLLAEKLVYKKIQSAIGISKAG-----VSGGGSLPMHIDLFYEAI-GVKV 244
                       L +KLV+KKI++A+G    G     +SGG  L      F     G  V
Sbjct: 253 -----------PLWDKLVFKKIKAALG----GRVRLMLSGGAPLSPDTQEFLRVALGCPV 297

Query: 245 QVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRG 302
             GYGLTE+        P     G VG P+   EIK+VD             +G + +RG
Sbjct: 298 LQGYGLTETCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRG 357

Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 362
             V +GY+KNP  T +A DEDGW +TGDIG   P           G L +  R K+   L
Sbjct: 358 PNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP----------DGTLKIIDRKKNLFKL 407

Query: 363 STGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGAIIVPDKEEVLMAAKRLSIVHADA 421
           S GE V   +LE     S L+ QI V G   +    AI+VPD++ +   A        D 
Sbjct: 408 SQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDF 467

Query: 422 SEL-SKEKTISLLYGELRKWTSKC---SF-QIGPIHVVDEPFTV 460
            EL + +K    +  +L +   +     F  +  IH+  EPFT 
Sbjct: 468 EELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFTP 511

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  147 bits (373), Expect = 4e-40
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 51/256 (19%)

Query: 220 KAGVSGGGSLPM-HIDLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV---LGSVGHPI 274
           + G+SGG  +P   +    E   +  +  GYG+TE+S V              G+VG P+
Sbjct: 120 RTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 275 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
              E+KIVD +  EV P G  G + VRG  VM+GY+ +P AT +A+D DGWL+TGD+G++
Sbjct: 180 PGVEVKIVDPDGGEV-PPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 394
                        G L + GR KD I +  GEN+ P E+EEA L    + +  V+G    
Sbjct: 239 DED----------GYLRIVGRIKDMI-IRGGENIYPAEIEEALLTHPAVAEAAVVG---- 283

Query: 395 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 450
                 VPD+   EV+ A   L       + L++E        EL  +   C  ++    
Sbjct: 284 ------VPDERLGEVVAAFVVL----KPGATLTEE--------ELIAF---CRGRLARFK 322

Query: 451 ----IHVVDE-PFTVN 461
               +  VDE P T +
Sbjct: 323 VPRYVRFVDELPRTAS 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  141 bits (357), Expect = 7e-37
 Identities = 101/407 (24%), Positives = 159/407 (39%), Gaps = 104/407 (25%)

Query: 70  ENGDKFLSMLPPWHVYERA--------CGYFI-FSRGIELMYTAVRNLKDDLQRYQPHYM 120
              D+ LS LP  H+ ER          G  + F   ++   T       DLQR +P   
Sbjct: 176 TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD---TFAA----DLQRARPTVF 228

Query: 121 ISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 180
            SVP     L++  Q+ I       +                        L    K P  
Sbjct: 229 FSVP----RLWTKFQQGILAKLPPEK------------------------LNLLLKIP-- 258

Query: 181 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYE 238
                                 +   LV KKI   +G+ +A ++G G+ PM   L  +Y 
Sbjct: 259 ----------------------ILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR 296

Query: 239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
            +G+ +  GYG+TE+        P    +G+VG PI   E+KI  +E  E+L        
Sbjct: 297 KLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKPIPGVELKI--SEDGEIL-------- 346

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
            +R   +M GY+K+P  T +A  EDGWL+TGD G I             G L + GR K+
Sbjct: 347 -IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDED----------GFLKITGRVKE 395

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH 418
               S G+ V P  +E     +  + Q+ V+G    +P A++V  +    +  + +    
Sbjct: 396 LFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQPVALVVLSEAADPLEREEV---- 451

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 465
               E S ++T++ +  EL         ++  + VV E +TV    L
Sbjct: 452 ----EESLQQTLAKVNSELESHE-----RLSALVVVKEAWTVENGLL 489

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  141 bits (358), Expect = 8e-37
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 220 KAGVSGGGSLPMHIDLFYEAIGVKVQV--GYGLTESSPVIAA--RRPTCNVLGSVGHPIN 275
           +  +SGG  LP  +   +E     + +  GYGLTE+SPV+            GSVG P+ 
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353

Query: 276 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
             E++IVD +  EVLP G  G + VRG  VM+GY+  P AT +A DEDGWL TGD+G++ 
Sbjct: 354 GVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--- 392
                       G L + GR KD I+   GEN+ P E+E        + +  V+G     
Sbjct: 413 ED----------GYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDER 461

Query: 393 -QRRPGAIIVPDKEEVLMAAKR 413
              R  A++V            
Sbjct: 462 WGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  136 bits (344), Expect = 3e-35
 Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 49/227 (21%)

Query: 223 VSGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGHPIN 275
           +SGG  LP+   + F E  G  +  GYGLTE+SPV         R+P     GS+G P+ 
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKP-----GSIGLPLP 302

Query: 276 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
            TE+KIVD E NE+ P G  G + VRG QVM+GY+  P  T + L  DGWL TGDIG++ 
Sbjct: 303 GTEVKIVDDEGNEL-PPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMD 360

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
                       G   +  R KD I +  G NV P E+EE       + +  V+G     
Sbjct: 361 ED----------GYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVG----- 404

Query: 396 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 440
                VPD    E + A     +V  + + L++E        EL  +
Sbjct: 405 -----VPDPYRGEAVKAF----VVLKEGASLTEE--------ELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  132 bits (335), Expect = 2e-34
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 223 VSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPINHTE 278
           +SGG  LP   +    E  G V +  GYG TE++ V  A  P       GS+G P+   E
Sbjct: 253 LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVE 312

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN--TGDIGWIAP 336
           +K++D E   V P G  G + +RG  V +GY  +P  T +   EDGW    TGD+G    
Sbjct: 313 VKVLDEEGEPV-PPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDE 371

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 388
                      G L + GR  D + +  GE +EP E+E   L    + +  V
Sbjct: 372 D----------GYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  134 bits (340), Expect = 5e-34
 Identities = 120/418 (28%), Positives = 178/418 (42%), Gaps = 89/418 (21%)

Query: 72  GDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DDLQRYQPHYMISVPLVYET 129
            D  +S LP  H+YER     +   G+ + +    NLK  DDL   +P    SVP +Y  
Sbjct: 262 SDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNR 321

Query: 130 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 189
           +Y GI   +  S      +   L     AY A K+  E      N K PS          
Sbjct: 322 IYDGITNAVKESG----GLKERLFNA--AYNAKKQALE------NGKNPS---------- 359

Query: 190 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYE-AIGVKVQV 246
                  +W      ++LV+ KI++ +G  +      G+ P+  D+  F     G +V  
Sbjct: 360 ------PMW------DRLVFNKIKAKLG-GRVRFMSSGASPLSPDVMEFLRICFGGRVLE 406

Query: 247 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRG 302
           GYG+TE+S VI+      N+ G VG P    E+K+VD      T+E  P   +G + VRG
Sbjct: 407 GYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPY-PRGEICVRG 465

Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 362
             + +GY+K+   T++ +DEDGWL+TGDIG   P          GG L +  R K+   L
Sbjct: 466 PIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKL 515

Query: 363 STGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLM--AAKR----- 413
           + GE + P ++E    +   + Q  V G D       A++V D  EVL   AA       
Sbjct: 516 AQGEYIAPEKIENVYAKCKFVAQCFVYG-DSLNSSLVAVVVVD-PEVLKAWAASEGIKYE 573

Query: 414 -----------LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV 460
                       + V AD   + +E        +LR +          + +V EPFTV
Sbjct: 574 DLKQLCNDPRVRAAVLADMDAVGRE-------AQLRGFE-----FAKAVTLVPEPFTV 619

Length = 651

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  129 bits (327), Expect = 7e-34
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHT 277
           +  +SGG  L    ++ F E  G  +  GYGLTE+S V +    +     G+VG P+   
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
           E+++VD E    LP G  G + VRG  VM+GY+ NP  T  A  EDGW  TGD+G++   
Sbjct: 179 EVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEE 237

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                     G L + GR+KD I    GENV P E+E   L+   + +  V+G       
Sbjct: 238 ----------GYLYITGRSKDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG------- 279

Query: 398 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD 455
            +   D+ E ++A     +V    ++   E        EL+        ++ P  V  
Sbjct: 280 -VPDEDRGERIVAF----VVLRPGADALAE--------ELKAH---LRERLAPYKVPR 321

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  127 bits (323), Expect = 3e-33
 Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 53/250 (21%)

Query: 220 KAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPI 274
           +  + G    PM  +L     E  G     GYG+TE+ P      P   +  LGSVG P+
Sbjct: 118 RLIIYGAA--PMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 275 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
              E++IVD +  E+ P G  G + VRG  VM GY+  P AT +AL  DGWL+TGD+G++
Sbjct: 176 PGVEVRIVDEDGREL-PPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYL 233

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 394
                        G L +  R KD I+ S GEN+ P E+E   L    +  + VIG    
Sbjct: 234 DED----------GYLYIVDRKKDMII-SGGENIYPAEVENVLLAHPAVADVAVIG---- 278

Query: 395 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 450
                 VPD+E  E ++A     +V    + L  E        EL  +   C  ++    
Sbjct: 279 ------VPDEEWGEAVVAV----VVLRPGATLDAE--------ELIAF---CRERLAGYK 317

Query: 451 ----IHVVDE 456
               +  VDE
Sbjct: 318 VPKSVEFVDE 327

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  127 bits (321), Expect = 8e-32
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 27/222 (12%)

Query: 202 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAAR 260
           LL     Y    S++   +  + GG +LP   +  F E  G+ +  GYG+TE+SPV++  
Sbjct: 269 LLKAPRAYFVDFSSL---RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325

Query: 261 RPTCNVLG------SVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNP 313
            P   + G      S G P+   E +IVD + +E+ P  G  G + VRG  +MQGY+  P
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 314 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 373
            AT + +D  GWL+TGD+G+I             G L +  R KD I+ S GEN+ P EL
Sbjct: 386 EATAETID-GGWLHTGDVGYIDED----------GYLYITDRIKDVII-SGGENIYPREL 433

Query: 374 EEAALRSSLIRQIVVIGQ-DQR---RPGAIIVPDKEEVLMAA 411
           E+A      + ++ VIG  D++   RP A++V      L A 
Sbjct: 434 EDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK 475

Length = 521

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  126 bits (320), Expect = 2e-31
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 48/229 (20%)

Query: 244 VQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 300
           V + YG+TE+SPV    R    +   + +VG  + H E+KIVD ET E +P G +G +  
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 301 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 360
           RG  VM+GY+ +P  T +A+D DGW++TGD+  +             G + + GR KD I
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE----------GYVNIVGRIKDMI 453

Query: 361 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 418
           +   GEN+ P E+EE       I+ + V+G          VPD++  E + A   L    
Sbjct: 454 I-RGGENIYPREIEEFLYTHPKIQDVQVVG----------VPDEKYGEEVCAWIIL---R 499

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIG----P--IHVVDE-PFTV 460
             A  L++E        ++R +   C  +I     P  I  VDE P TV
Sbjct: 500 PGA-TLTEE--------DVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  123 bits (312), Expect = 4e-31
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 27/173 (15%)

Query: 241 GVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           G+ +   YG+TE++  +A  +P      LGSVG P+   E++IV+ +  E+L        
Sbjct: 213 GIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEIL-------- 264

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
            VRG  +  GY      T   LDEDGW +TGD+G++    + G        L + GR  D
Sbjct: 265 -VRGPSLFLGYLPQGGLT-PPLDEDGWFHTGDLGYL---DAEGY-------LYVLGRRDD 312

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 407
            I+ S GEN+ P E+E   L+   + +  V+G        RP A +VP+ + V
Sbjct: 313 LII-SGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (311), Expect = 1e-30
 Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 223 VSGGGSLPM-HIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTE 278
            SG   L     + F     GV++  GYG+TESSPV             GSVG  + + E
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
            KIVD ET E LP    G + VRG QVM+GY  NP AT + +D+DGWL+TGD+G+     
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDE-- 398

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 398
                    G L +  R K+ I    G  V P ELE   L    I    VI         
Sbjct: 399 --------DGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIP-------- 441

Query: 399 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTIS 431
              PD+E  E+ MA     +V    SELS+++ + 
Sbjct: 442 --YPDEEAGEIPMAF----VVRQPGSELSEDEVMQ 470

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (309), Expect = 3e-30
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIA---ARRPTCNVLGSVGHPI 274
           +  V+G  S+P+  ++ F   +GV  V  GYGL+E+S V            V G++G  I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343

Query: 275 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
              E KIV+    EV P G  G + VRG  VM+GY+ +P AT  A+D DGWL+TGD+G +
Sbjct: 344 AGVENKIVNELGEEV-PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRL 402

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 394
                 G        L +  R KD   +  G NV P E+EE       + +  VIG    
Sbjct: 403 DE---EGY-------LYIVDRKKDMF-IVGGFNVYPAEVEEVLYEHPAVAEAAVIG---- 447

Query: 395 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 431
                 VPD  E L    +  +V    +EL++E+ I+
Sbjct: 448 ------VPD--ERLGEVGKAYVVLKPGAELTEEELIA 476

Length = 513

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  119 bits (300), Expect = 2e-29
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 248 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
           YG+TE     S+P+   RRP     G+VG P+   E++IVD +  E L AG  G ++VRG
Sbjct: 238 YGMTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG 292

Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 362
             V   Y+  P AT +A  EDGW  TGD+G               G   + GR  D I+ 
Sbjct: 293 PNVFSEYWNKPEATAEAFTEDGWFKTGDVGV----------VDEDGYYRILGRKSDDIIK 342

Query: 363 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 411
           S G  V  LE+EEA L    + ++ VIG           A++VP+    L  A
Sbjct: 343 SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  120 bits (303), Expect = 3e-29
 Identities = 102/349 (29%), Positives = 162/349 (46%), Gaps = 52/349 (14%)

Query: 73  DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETL 130
           D +LS LP  H+ +R    + F +G  + Y    +  L+DDL   +P  +  VP V+E +
Sbjct: 267 DVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERI 326

Query: 131 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190
           + GIQK +   +  RR++  AL +   A+    R Y         K+ S           
Sbjct: 327 HEGIQKALQELNPRRRLIFNALYKYKLAW--MNRGYS-------HKKAS----------- 366

Query: 191 RIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQV-GY 248
                   P+   A+ L ++K+++ +G   +  +SGG  L   I+ F         V GY
Sbjct: 367 --------PM---ADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGY 415

Query: 249 GLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQV 305
           GLTE+  P          +LG+VG P  + E+++ +       P G   +G + VRG  +
Sbjct: 416 GLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCL 475

Query: 306 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 365
             GY+KNP  T++ + +DGW +TGDIG I P+          GVL +  R K+ I LS G
Sbjct: 476 FSGYYKNPELTEEVM-KDGWFHTGDIGEILPN----------GVLKIIDRKKNLIKLSQG 524

Query: 366 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLMAAK 412
           E V    LE    ++ ++  I V G D  +    A++VP++E     AK
Sbjct: 525 EYVALEYLENVYGQNPIVEDIWVYG-DSFKSMLVAVVVPNEENTNKWAK 572

Length = 660

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  116 bits (293), Expect = 5e-29
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 21/189 (11%)

Query: 224 SGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAAR--RPTCNVLGSVGHPINHTEIK 280
           S    LP   +D   +  GV V   YG+TE++  IA+    P     GSVG P    E+ 
Sbjct: 125 SASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVA 183

Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 340
           I+D +    LP G +G + +RG  V  GY  NP A ++A   DGW  TGD+G++      
Sbjct: 184 ILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDED--- 238

Query: 341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RP 396
                  G L L GR K+ I    GE + P E+EE  LR   + + VV G  D+      
Sbjct: 239 -------GYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290

Query: 397 GAIIVPDKE 405
            A +V   +
Sbjct: 291 AAAVVLRAD 299

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  116 bits (294), Expect = 2e-28
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 29/208 (13%)

Query: 234 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 293
           +LF E  G+++  GYG TE SPVI+   P  N  G+VG P+   E++IV  ET+E LP G
Sbjct: 277 ELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 294 SKGIVKVRGSQVMQGYFKNPSATK-QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 352
             G++ VRG  VM GY  N   T    +  DGW +TGDIG I             G L +
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED----------GFLTI 386

Query: 353 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIV-------P 402
            GR K    +  GE V  L   E  L   L        V   D+++ G  IV        
Sbjct: 387 VGRLKRFAKIG-GEMV-SLTAVEELLSEILPEDSLHAAVEVPDEKK-GEKIVLLTTTEDL 443

Query: 403 DKEEVLMAAKRLSIVHADASELSKEKTI 430
           D EE+    +      A    L+  + I
Sbjct: 444 DPEELNAILR-----EAGLPNLAVPRKI 466

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  116 bits (293), Expect = 4e-28
 Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 49/229 (21%)

Query: 244 VQVGYGLTESSPVI---AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 300
           VQ+ YG+TE+SPV     A       + +VG    H E+K+VD +    +P G  G +  
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCT 404

Query: 301 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 360
           RG  VM+GY+ NP AT +++DEDGW++TGD+  +             G + + GR+KD I
Sbjct: 405 RGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQ----------GYVRIVGRSKDMI 454

Query: 361 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 418
           +   GEN+ P E+EE       +  + V G          VPD++  E ++A  RL   H
Sbjct: 455 I-RGGENIYPREIEEFLFTHPAVADVQVFG----------VPDEKYGEEIVAWVRLHPGH 503

Query: 419 ADASELSKEKTISLLYGELRKWTSKCSFQIG----PIHV--VDE-PFTV 460
           A + E            ELR++   C  +I     P +   VDE P TV
Sbjct: 504 AASEE------------ELREF---CKARIAHFKVPRYFRFVDEFPMTV 537

Length = 558

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  115 bits (290), Expect = 1e-27
 Identities = 96/364 (26%), Positives = 159/364 (43%), Gaps = 61/364 (16%)

Query: 55  MTNFQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--TAVRNLKDDL 112
           ++   +  + D V  E  D + S LP  HVY++    +  S+G  + +    +R L +D+
Sbjct: 250 LSTDHLLKVTDRVATEE-DSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDV 308

Query: 113 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 172
           Q  +P     VP VY+ +Y+GI ++I +    R+ +        FAY  +K       L 
Sbjct: 309 QALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKL------FDFAYN-YKLGNLRKGLK 361

Query: 173 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPM 231
           + +  P                          ++LV+ KI+  +G   +  +SG   LP 
Sbjct: 362 QEEASP------------------------RLDRLVFDKIKEGLGGRVRLLLSGAAPLPR 397

Query: 232 HIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIV------- 282
           H++ F       V   GYGLTES      +     +++G+VG P+   E ++        
Sbjct: 398 HVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGY 457

Query: 283 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342
           DA ++  +P   +G + +RG+ +  GY K    T++ L  DGW +TGDIG   P+     
Sbjct: 458 DALSD--VP---RGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPN----- 506

Query: 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIV 401
                G + +  R K+   LS GE V    LE    R  LI  I V G   +    A++V
Sbjct: 507 -----GAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVV 561

Query: 402 PDKE 405
           PD++
Sbjct: 562 PDRQ 565

Length = 660

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (285), Expect = 2e-27
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPINHTEIKI 281
           V G          F E  GVK+  GYG+TE+  P+IA   P     GS G P    E++I
Sbjct: 201 VFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI 258

Query: 282 VDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
           VD +  EV P G  G + VR  +   + +GY+  P AT +A   +GW +TGD G      
Sbjct: 259 VDEDGREV-PPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED- 315

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
                    G L    R KD I    GEN+   E+E A L    + +  V+ 
Sbjct: 316 ---------GFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  113 bits (285), Expect = 4e-27
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 224 SGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           SG   L   + +   +      ++ GYG+TE+ P      P     GSVG  + + E KI
Sbjct: 270 SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKI 329

Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341
           VD +  + L    +G + V+G Q+M+GY  NP ATK+ +DEDGWL+TGDIG+        
Sbjct: 330 VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDE----- 384

Query: 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPG 397
                 G   +  R K+ I    G  V P ELE   L    +    VIG         P 
Sbjct: 385 -----DGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPR 438

Query: 398 AIIVPDKEEVLMAA 411
           A +V      L   
Sbjct: 439 AYVVLKPGSKLTEQ 452

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 6e-27
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 220 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           K  +SGG +L +     ++ + G  +  GYG+TE+SPV++        +G++G P+  T 
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
            K++D + NE LP G  G + V+G QVM+GY++ P AT + LD DGWL TGDI  I    
Sbjct: 389 CKVIDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED- 446

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE--AALRSSLIRQIVVIGQDQRRP 396
                    G + +  R KD I++S G NV P ELE+  AAL   L  Q   IG    + 
Sbjct: 447 ---------GYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL--QCAAIGVPDEKS 494

Query: 397 GAII 400
           G  I
Sbjct: 495 GEAI 498

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  112 bits (282), Expect = 1e-26
 Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 46/236 (19%)

Query: 208 VYKKIQSAI---GISKAGV----SGGGSLPMHIDLFYEAI--GVKVQVGYGLTESSPVIA 258
           +Y+KI  A    G+  +GV    SG  +LP+     +E +  G+ V+ GYGLTE+SP+I 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVE-GYGLTETSPIIV 378

Query: 259 A------RRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFK 311
                  RRP     G VG P   TE++IVD E  +E +P G +G + VRG QV +GY+ 
Sbjct: 379 GNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN 433

Query: 312 NPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 371
            P  T ++   DGW  TGD+  +             G + +  R K+ I+ + G NV P 
Sbjct: 434 RPEETAKSF-LDGWFRTGDVVVMEED----------GFIRIVDRIKELII-TGGFNVYPA 481

Query: 372 ELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 427
           E+EE       +    V+G     P      D  E ++AA    +V    + L  E
Sbjct: 482 EVEEVLREHPGVEDAAVVG----LPR----EDGSEEVVAA----VVLEPGAALDPE 525

Length = 573

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  110 bits (277), Expect = 5e-26
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 224 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIK 280
           SGG +L       +E + G  +  GYGLTE+SPV A+  P   +  LG+VG P+  T +K
Sbjct: 340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPV-ASTNPYGELARLGTVGIPVPGTALK 398

Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 340
           ++D + NE LP G +G + ++G QVM+GY++ P AT +ALD +GW  TGDI  I P    
Sbjct: 399 VIDDDGNE-LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD--- 454

Query: 341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                  G + +  R KD I++S G NV P E+E+  +    +     IG    R G
Sbjct: 455 -------GFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (275), Expect = 7e-26
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)

Query: 220 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAA-----RRPTCNVLGSVGHP 273
           +A +SG   LP+ +   +E + G K+  GYGLTESSPV  +     +R    V GS+G P
Sbjct: 326 RACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKR----VPGSIGVP 381

Query: 274 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
              TE  I+  ET E LP G  G + V+G Q+M+GY+  P  T   L +DGWL+TGD+G+
Sbjct: 382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGY 440

Query: 334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
           +             G   ++ R KD IV S G NV P E+EE       ++++V IG
Sbjct: 441 MDED----------GFFYVKDRKKDMIVAS-GFNVYPREVEEVLYEHEKVQEVVTIG 486

Length = 563

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  106 bits (267), Expect = 5e-25
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 223 VSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---VLGSVGHPINHTE 278
           + GG  +P        EA+G KV   YG+TE  P++    P         + G P+   E
Sbjct: 214 LCGGAPVPRELARRAAEALGAKVVRAYGMTEV-PLVTVGTPDDPDDKRAATDGRPVPGVE 272

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
           ++IVD + N+V P G +G ++VRG Q+  GY   P  T+   D DGW  TGD+G +    
Sbjct: 273 VRIVDDDGNDV-PPGEEGELQVRGPQLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDAD- 329

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR--- 394
                    G L + GR KD I+   GEN+   E+E+  LR   + ++ V+   D+R   
Sbjct: 330 ---------GYLRITGRKKDIIIRG-GENISAREIEDLLLRHPAVAEVAVVAMPDERLGE 379

Query: 395 RPGAIIVP------DKEEVLMAAKRLSIVHADASELSKEKT 429
           R  A++VP         E+          H  A  L+K+K 
Sbjct: 380 RVCAVVVPAPGASLTLAELTE--------HLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (261), Expect = 6e-24
 Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 219 SKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI 274
           S   +S GG + +     + + +  G  +  GYGLTE SP+++          GS+G P+
Sbjct: 325 SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV 384

Query: 275 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
             TEIK+VD + NEV P G  G + V+G QVM GY++ P AT + + +DGWL TGDI  +
Sbjct: 385 PSTEIKLVDDDGNEV-PPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVM 442

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 391
                        G L +  R KD I++S G NV P E+E+  +    + ++  +G 
Sbjct: 443 DEE----------GFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVLEVAAVGV 488

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  103 bits (258), Expect = 2e-23
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 234 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 293
             F         +   LT      AA  P       +G PI    I+IVD E   +LP G
Sbjct: 340 RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEG 398

Query: 294 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 353
             G ++VRG  V  GY++NP A  +A  EDGW  TGD+G++  H          G L + 
Sbjct: 399 EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HD---------GRLTIT 447

Query: 354 GRAKDTIVLSTGENVEPLELEEA 376
           GR KD I+++ G N    E+E A
Sbjct: 448 GREKDMIIIN-GVNYYNHEIEAA 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  100 bits (250), Expect = 7e-23
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 218 ISKAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSP---VIAARRPTCNVLGSVG 271
           +S   V GGG   +   +        G+  + GYGLTE+          RP       +G
Sbjct: 198 LSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPK---PQCLG 254

Query: 272 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 328
            P+  T+ +++D ET E LP G +G + VRG QV +GY+  P AT ++    D   +  T
Sbjct: 255 IPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

Query: 329 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 388
           GD+G+I             G      R K  I +S G  V P E+E    +   + ++ V
Sbjct: 315 GDLGYIDEE----------GYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

Query: 389 IGQ-DQRR---PGAIIVPDKE 405
           IG+ D RR     A +V   +
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  101 bits (253), Expect = 7e-23
 Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-----------CNVLGSVG 271
           V GG +LP  +    E  GV+V   +G+TE+SP+    R               +    G
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344

Query: 272 HPINHTEIKIVDAETNEVLPAG-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 330
            P+   E++IVD E NE+   G + G + VRG  V   Y+K+P  T+  L  DGW  TGD
Sbjct: 345 RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTE-ELTRDGWFRTGD 403

Query: 331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
           +  I             G + +  RAKD I  S GE +  +ELE A +    + +  V+G
Sbjct: 404 VAVIDED----------GYIQITDRAKDVIK-SGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 391 QD----QRRPGAIIVP------DKEEVL 408
                   RP A++V        +EE+L
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELL 480

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  100 bits (252), Expect = 1e-22
 Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 19/195 (9%)

Query: 203 LAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAAR 260
           LA+KLV+KK++ A+G+ +      G+ P+  +   F+ ++ + +   YG++E+S      
Sbjct: 302 LAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVS 361

Query: 261 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 320
            P    L S G  +   E KI + + + +      G + + G  V  GY      T++A+
Sbjct: 362 NPQNYRLLSCGKALPGCETKIHNPDADGI------GEICIWGRHVFMGYLNMEEKTEEAI 415

Query: 321 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-LR 379
           DEDGWL++GD+G++             G L + GR K+ I+ + GENV P+ +EEA    
Sbjct: 416 DEDGWLHSGDLGFLDDD----------GFLYITGRIKELIITAGGENVPPVPIEEAVKKE 465

Query: 380 SSLIRQIVVIGQDQR 394
             +I   +++G  ++
Sbjct: 466 LPIISNAMLVGDKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =   99 bits (250), Expect = 2e-22
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ------ALDE 322
           S G P+   E++IVD ET   LP G  G + VRG  V  GY+  P AT +      A DE
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 323 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 382
            GWL TGD+G++             G L + GR KD I++  G N  P ++E    R+  
Sbjct: 416 GGWLRTGDLGFLH-----------DGELYVTGRLKDLIIIR-GRNHYPQDIEATVERAHP 463

Query: 383 IRQIVVIGQDQRRPGAIIVPDKEE---VLMAAKRLSIVHADASELSKE 427
             +            A  V    E   V++A  R   + AD + L++ 
Sbjct: 464 ALRPG-------AAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 98.9 bits (247), Expect = 3e-22
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 21/138 (15%)

Query: 269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
            VG PI+  EI+IVD +  EVLP  + G ++++G  V  GY+ NP ATK+++  DGWL T
Sbjct: 315 EVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKT 373

Query: 329 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 388
           GD+G++             G LV+ GRAKD I+++ G+N  P ++E  A          V
Sbjct: 374 GDLGFLR-----------NGRLVITGRAKDIIIVN-GQNYYPHDIERVA--------EQV 413

Query: 389 IGQDQRRPGAIIVPDKEE 406
            G    R  A  V D++E
Sbjct: 414 EGIKLGRVAACGVYDEKE 431

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 98.9 bits (247), Expect = 4e-22
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 247 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           GYG+TE+ PV+A     A+ P     GS G  + + E+KIVD ET   LP    G + +R
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
           G Q+M+GY  +P AT   +D+DGWL+TGDIG+I
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Length = 537

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.0 bits (244), Expect = 6e-22
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)

Query: 224 SGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI-------AARRPTCNVLGSVGHPINH 276
           +GG   P  +   +   G     G+G+TE+SP +       A R+      GS+G P+  
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKV-----GSIGKPVLF 325

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
            + +++D   N+V   G  G + +RG  VM+ Y+  P AT++ + +DGWL TGD+  +  
Sbjct: 326 CDYELIDENKNKV-EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE 383

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR- 395
                      G + + GR K+ I+ S GEN+ PLE+E+   + S + ++ V+G+   + 
Sbjct: 384 D----------GFVYIVGRKKEMII-SGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKW 432

Query: 396 ---PGAIIVPDKEEVLMAA 411
              P A IV     VL+  
Sbjct: 433 GEIPIAFIVKKSSSVLIEK 451

Length = 496

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 98.8 bits (247), Expect = 7e-22
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 234  DLFYEAIGVKVQVGYGLTESSPVIAARRP----------TCNVLGSVGHPINHTEIKIVD 283
            D F E  G+++  GYG TE+SPV +   P          T +  GSVG P+    ++IVD
Sbjct: 916  DAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD 975

Query: 284  AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWI 334
             ET E LP G  G++ + G QVM+GY  +P  T + +   D  GW  TGD G +
Sbjct: 976  PETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029

Length = 1146

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 248 YGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 305
           YG+TE++  I    P      LGS G P+   E+KI       V+P   +G + V+G  V
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGV--VVPPFEEGEIVVKGPNV 342

Query: 306 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 365
            +GY     AT++   +DGW  TGDIG++             G L +  R  D I+ S G
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEE----------GFLYVLDRRSDLII-SGG 390

Query: 366 ENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKE 405
           EN+ P E+EE  L    + +  V+G    +    P A +V   E
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434

Length = 483

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 237 YEAIGVKVQVGYGLTESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLPAGSK 295
            E  G  +  GYGL+E+SPV            G++G P+  TE+ I D + N+ LP G  
Sbjct: 348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGND-LPLGEP 406

Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           G + +RG QVM GY+  P  T + +  DG+  TGD+G +     RG ++       +  R
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE---RGYTK-------IVDR 456

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
            KD I++S G NV P E+EE       + ++  +G
Sbjct: 457 KKDMILVS-GFNVYPNEIEEVVASHPGVLEVAAVG 490

Length = 557

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.5 bits (233), Expect = 7e-21
 Identities = 59/173 (34%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 220 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGH 272
           +  ++G   LP+ +   F    GV V  GYG+TE + V A       RRP     GSVG 
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRP-----GSVGL 179

Query: 273 PINHTEIKIV----DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
            + +T +++               G  G++ +RG  V  GY  N +    A  EDGWLNT
Sbjct: 180 RLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNT 238

Query: 329 GDIGWIAPHHSRGRSRRCG--GVLVLEGRAKDTIVLSTGENVEPLELEEAALR 379
           GD+G            R    G L L GRAKD I+   G N++P  +EEA LR
Sbjct: 239 GDLG------------RIDADGYLWLTGRAKDLIIRG-GHNIDPQMIEEALLR 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 95.1 bits (236), Expect = 9e-21
 Identities = 100/398 (25%), Positives = 165/398 (41%), Gaps = 54/398 (13%)

Query: 73  DKFLSMLPPWHVYERACGYFIFSRG--IELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 130
           D +LS LP  H+++R         G  I      V+ L +DL   +P    +VP V + +
Sbjct: 270 DVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRV 329

Query: 131 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190
           YSG+QK++      ++ V  +     F                 +K  S++ A       
Sbjct: 330 YSGLQKKLSDGGFLKKFVFDSAFSYKFGNM--------------KKGQSHVEA------- 368

Query: 191 RIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGV-KVQVGY 248
                       L +KLV+ K++  +G + +  +SG   L  H++ F   +    V  GY
Sbjct: 369 ----------SPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGY 418

Query: 249 GLTESSPVIAARRP-TCNVLGSVGHPINHTEIKI--VDAETNEVLPAGSKGIVKVRGSQV 305
           GLTES        P   ++LG+VG P+ + +I++  V     + L +  +G + +RG  +
Sbjct: 419 GLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTL 478

Query: 306 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 365
             GY+K    TK+ L  DGWL+TGD+G   P+          G + +  R K+   LS G
Sbjct: 479 FSGYYKREDLTKEVLI-DGWLHTGDVGEWQPN----------GSMKIIDRKKNIFKLSQG 527

Query: 366 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELS 425
           E V    +E        +  + V G         I    +++L      + V  D + L 
Sbjct: 528 EYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALC 587

Query: 426 K-EKTISLLYGELRKWTSKCSFQ----IGPIHVVDEPF 458
           + EK    + GEL K   +   +    I  IH+   PF
Sbjct: 588 QNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPF 625

Length = 666

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 94.2 bits (235), Expect = 1e-20
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)

Query: 248 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
           YG+TE     S+P    RR      G+VG P+    +++ D ET   LP G  G+++V+G
Sbjct: 301 YGMTETNMNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355

Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 362
             V +GY++ P  T +    DG+  TGD+G I             G + + GR KD I+ 
Sbjct: 356 PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER----------GYVHIVGRGKDLII- 404

Query: 363 STGENVEPLELE 374
           S G NV P E+E
Sbjct: 405 SGGYNVYPKEVE 416

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 224 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINH 276
           +GG      I     A    K+   YGLTE+       P    RRP      S+G  I +
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRP-----DSIGKAIPN 179

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----DGWLNTGDI 331
            E+ +VD + N   P G  G +  RG+ VM+GY+ +P AT + L       +  L TGD+
Sbjct: 180 VELWVVDEDGNRCAP-GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238

Query: 332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 391
             +             G L   GR KD ++ + G  V P E+EE      L+ +  VIG 
Sbjct: 239 VRMDEE----------GYLYFVGR-KDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287

Query: 392 DQRRPGAIIV----------PDKEEVLM-AAKRL 414
                G  IV           D++E+L    K L
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 238 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 297
            A+G+ V  GYGL+E + V++   P  +  GSVG P+ H ++ I  A   E+L       
Sbjct: 258 RALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI--ANDGEIL------- 308

Query: 298 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 357
             VRGS  M GY   P AT      D W  TGD+G +             G L + GR K
Sbjct: 309 --VRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEE----------GYLYINGRKK 349

Query: 358 DTIVLSTGENVEPLELEEAALRSSL-IRQIVVIGQDQRRPGAIIVPDKE---EVLMAA 411
           + I+ S G NV P E  E+ L+ +  I Q VV G  Q    A+IVP      + L AA
Sbjct: 350 NLIITSFGRNVSP-EWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 73/276 (26%), Positives = 106/276 (38%), Gaps = 57/276 (20%)

Query: 137 QIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAI 196
            IFT  A   ++ +         T F  IY+   L   +KQP+ L AL  +L        
Sbjct: 261 DIFTPDACLALLEQQRCTCMLGATPF--IYDLLNLL--EKQPADLSALRFFL-------- 308

Query: 197 LWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP- 255
                                       GG ++P  +    +  G+K+   YG TESSP 
Sbjct: 309 ---------------------------CGGTTIPKKVARECQQRGIKLLSVYGSTESSPH 341

Query: 256 -VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 314
            V+    P    + + G+     EIK+VD     + P G +G    RG  V  GY   P 
Sbjct: 342 AVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTL-PPGCEGEEASRGPNVFMGYLDEPE 400

Query: 315 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 374
            T +ALDE+GW  +GD+  +      G  +       + GR KD IV   GEN+   E+E
Sbjct: 401 LTARALDEEGWYYSGDLCRM---DEAGYIK-------ITGRKKDIIV-RGGENISSREVE 449

Query: 375 EAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEE 406
           +  L+   I    V+     R G    A +V     
Sbjct: 450 DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH 485

Length = 547

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 27/189 (14%)

Query: 225 GGGSLPMHIDLFYEAI--GVKVQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKI 281
           GG ++P    L  EA   G+ + + YG+TE+ S V  A     +    VG P+   EIKI
Sbjct: 227 GGSAIP--APLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI 284

Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341
                         G + V+G+ +M+GY      T  A ++ GW NTGDIG +       
Sbjct: 285 KVDNKEGH------GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGE---- 333

Query: 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 397
                 G L + GR  D I+ S GEN+ P E+E    +   I++ VV+   D      P 
Sbjct: 334 ------GFLYVLGRRDDLII-SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386

Query: 398 AIIVPDKEE 406
           A IV + + 
Sbjct: 387 AYIVSESDI 395

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 92.6 bits (230), Expect = 4e-20
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 214 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV---------IAARRPTC 264
           +A+    A  +GG        L +   G+ +  G+G++E+  V         I A+    
Sbjct: 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK---- 304

Query: 265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 324
              G+ G P    + ++VD + N+  PAG  G + +RG  +  GY++ P AT +A   DG
Sbjct: 305 --AGAAGIPTPTVQTRVVDDQGNDC-PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 325 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 384
           W  TGDI            R   G   +  R KD + +S GENV P E+E        IR
Sbjct: 362 WFRTGDIA----------RRDADGFFWVVDRKKD-MFISGGENVYPAEIEAVLADHPGIR 410

Query: 385 QIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 440
           +  V+G          + D +  EV      L+IV AD + L  E+  S L   L K+
Sbjct: 411 ECAVVG----------MADAQWGEV----GYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 91.9 bits (229), Expect = 5e-20
 Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 36/207 (17%)

Query: 236 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT---------EIKIVDAET 286
             E +G  +Q  +G+ E              L      I  T         EI+IVD + 
Sbjct: 275 VEERLGCPLQQVFGMAEGLV-------NYTRLDDPPDVIMRTQGRPISPADEIRIVDDQG 327

Query: 287 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 346
             V P G  G +  RG   ++GY++ P    +A  +DG+  TGD+  I            
Sbjct: 328 EPV-PPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDA---------- 376

Query: 347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIVP 402
            G   + GR KD I    GE + P E+E   L    +    V+G  D+    R  A +VP
Sbjct: 377 DGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVP 435

Query: 403 -DKEEVLMAAKRLSIVHADASELSKEK 428
                  +A  R          L+K K
Sbjct: 436 RGGAAPTLAELR---AFLREQGLAKFK 459

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 92.1 bits (229), Expect = 9e-20
 Identities = 106/400 (26%), Positives = 168/400 (42%), Gaps = 68/400 (17%)

Query: 66  IVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-----------DLQ 113
           +VP     D +L+ LP  H+ E A    + + G  + Y +   L D           D  
Sbjct: 285 VVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDAS 344

Query: 114 RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR 173
             +P  M +VP + + +  G++K++     A+  +A+ L  I     A+KR         
Sbjct: 345 ALKPTLMTAVPAILDRVRDGVRKKV----DAKGGLAKKLFDI-----AYKR--------- 386

Query: 174 NQKQPSYLVALID--WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV-SGGGSLP 230
                   +A I+  W  A  +  +LW      + LV+KKI++ +G     + SGG  L 
Sbjct: 387 -------RLAAIEGSWFGAWGLEKLLW------DALVFKKIRAVLGGRIRFMLSGGAPLS 433

Query: 231 MHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 289
                F    +G  +  GYGLTE+             +G VG P+    +K+V  E    
Sbjct: 434 GDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGY 493

Query: 290 LPAGS---KGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHSRGR 342
           L +     +G + + G  V  GYFKN   T +   +DE G  W  TGDIG   P      
Sbjct: 494 LISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPD----- 548

Query: 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AII 400
                G L +  R KD + L  GE V  L   EAAL  S     +++  D       A++
Sbjct: 549 -----GCLEIIDRKKDIVKLQHGEYVS-LGKVEAALSVSPYVDNIMVHADPFHSYCVALV 602

Query: 401 VPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLYGELRK 439
           VP ++ +   AK+  I +++ +EL  KE+ +  +   L K
Sbjct: 603 VPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSK 642

Length = 696

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 238 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGS---------VGHPINH-TEIKIVDAE 285
           E +G +V   YGLTE+     +   +P  + L +          G       E+ +VD E
Sbjct: 302 EELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPE 361

Query: 286 TNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 343
           T + +P   K  G + +RG+ VM+GY+KNP AT++A    GW ++GD+  + P       
Sbjct: 362 TMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPD------ 414

Query: 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RPGAI 399
               G + ++ R+KD I++S GEN+  +E+E    +   + +  V+ + D++    P A 
Sbjct: 415 ----GYIEIKDRSKD-IIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 400 IVPDK-----EEVLMA 410
           +V        EE L+ 
Sbjct: 470 VVLKPGASVTEEELIE 485

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 223 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           VS G +LP  + + + EA G+++  G G TE   +  + RP     G+ G P+   E ++
Sbjct: 214 VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARL 273

Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341
           VD    EV PAG+ G + VRG  +  GY+  P  T++ L  DGWL TGD           
Sbjct: 274 VDESGREV-PAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDR---------- 321

Query: 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 397
            SR   G    +GRA D I +S G+ V PLE+E A      + +  V+   D+    R  
Sbjct: 322 FSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLK 380

Query: 398 AIIVPDKEE 406
           A +VP   E
Sbjct: 381 AFVVPRPGE 389

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 92/362 (25%), Positives = 140/362 (38%), Gaps = 64/362 (17%)

Query: 58  FQIRSLYD--IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQ 113
             +  L    I    N    LS LP  H+YER   Y  F  G  +   +  +     D+ 
Sbjct: 331 NTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIY 390

Query: 114 RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI--RISFAYTAFKRIYEGFCL 171
             + + +  VP V+  +Y+ I  +I      +R + + ++  R S     F +  EG  +
Sbjct: 391 NSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEG--I 448

Query: 172 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL- 229
           T                                   +  KI+  +  + +  ++GGG L 
Sbjct: 449 TH----------------------------------ISSKIKDKVNPNLEVILNGGGKLS 474

Query: 230 PMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPIN-HTEIKIVDAET- 286
           P   +     + V    GYGLTE++ P+        N   S+G PI+ +T+ K+   ET 
Sbjct: 475 PKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTE-SIGGPISPNTKYKVRTWETY 533

Query: 287 --NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 344
              + LP   KG + ++   +  GYF     TK A  EDG+  TGDI  I  +       
Sbjct: 534 KATDTLP---KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKN------- 583

Query: 345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPD 403
              G L    R+K  + LS GE +E   L     + S I   VV G D    P AII  D
Sbjct: 584 ---GSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVD 640

Query: 404 KE 405
           K 
Sbjct: 641 KY 642

Length = 746

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 89.3 bits (222), Expect = 7e-19
 Identities = 79/310 (25%), Positives = 134/310 (43%), Gaps = 74/310 (23%)

Query: 63  LYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-------DLQR 114
           L D++ P E  + + S LP  H+ E        +RG  + + + R L D       DL  
Sbjct: 300 LNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTE 359

Query: 115 YQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 174
           ++P ++I VP +++T+   ++ ++    + +R V             F   Y+       
Sbjct: 360 FRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRV-------------FDHAYQ------- 399

Query: 175 QKQPSYLVALID------WLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGG 227
               S L AL +      W                  + V+   ++ +G   +A +SGGG
Sbjct: 400 ----SRLRALKEGKDTPYW-----------------NEKVFSAPRAVLGGRVRAMLSGGG 438

Query: 228 SLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRP---TCNVLGSVGHPINHTEIKIVD 283
            L      F   + G+ +Q G+GLTE+      +R      N   +VG  +   E+K++D
Sbjct: 439 PLSAATQEFVNVVFGMVIQ-GWGLTETVCCGGIQRTGDLEPN---AVGQLLKGVEMKLLD 494

Query: 284 AE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 339
            E    T+   P   +G + +RG  + +GY+K    T++ LDEDGW +TGD+G IA +  
Sbjct: 495 TEEYKHTDTPEP---RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAAN-- 549

Query: 340 RGRSRRCGGV 349
            G  R  G V
Sbjct: 550 -GTLRIIGRV 558

Length = 700

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 88.1 bits (219), Expect = 1e-18
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 42/173 (24%)

Query: 226 GGSLPMHIDL---FYEAIGVKVQVGYGLTES------SPVIAARRPTCNVLGSVGHPINH 276
            G+ P+ +++   F  A GV++  GYGLTE+      +P    RR      GSVG  + +
Sbjct: 340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRI-----GSVGLRLPY 394

Query: 277 TEIKIV----------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 326
             +++V          D   +EV      G++ + G  V  GY    +  K    EDGWL
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEV------GVLCIAGPNVFSGYL-EAAHNKGLWLEDGWL 447

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 379
           NTGD+G I             G   L GRAKD I+   G N++P  +EEA LR
Sbjct: 448 NTGDLGRIDAD----------GYFWLTGRAKDLIIRG-GHNIDPAAIEEALLR 489

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 241 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 298
           G+ +   YGLTE+SP  A   P       GS+G PI  T+  I D +   VL  G  G +
Sbjct: 354 GLTLVEAYGLTETSPA-ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGEL 411

Query: 299 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 358
            ++G QVM+GY+K P  T + +D DGWL+TGDI          R    G V +++ R KD
Sbjct: 412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI---------ARMDEQGFVYIVD-RKKD 461

Query: 359 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAII 400
            I++S G NV P E+E+       + ++  +G    + G I+
Sbjct: 462 MILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 247 GYGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
            YGLTE+     ++ A R     +GS G  + H EI+I D      LP   KG + +RG 
Sbjct: 296 AYGLTETCSGDTLMEAGREI-EKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGP 353

Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 363
           +V +GY+K+P  T +A     W  +GD+G++             G L L  R KD I +S
Sbjct: 354 KVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE----------GFLYLTDRKKDMI-IS 401

Query: 364 TGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIV 401
            GEN+   E+E        + +  VIG  D R   R  A++V
Sbjct: 402 GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 82.4 bits (204), Expect = 7e-17
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 238 EAIGVKVQVGYGLTESSPV--IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 295
            A+G K+   +G+TE+  V       P      + G P+   E+++VDA+    LPAG  
Sbjct: 334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAP-LPAGQI 392

Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           G ++VRG     GY K P       D DGW +TGD+  I             G + + GR
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLN--GTDADGWFDTGDLARIDA----------DGYIRISGR 440

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 402
           +KD +++  GEN+  +E+E    R   I Q+ ++     R G    A +VP
Sbjct: 441 SKD-VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 82.4 bits (204), Expect = 9e-17
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 270 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 329
           VG P+  TE KI D ET E+LP G++G + VR   +++GY+  P AT +AL  DGWL+TG
Sbjct: 389 VGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG 447

Query: 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 389
           DIG I             G L   GR K+ + ++ G +V P E+E    +   +    V+
Sbjct: 448 DIGKIDEQ----------GFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVV 496

Query: 390 GQDQRRPGAIIV 401
           G+     G + V
Sbjct: 497 GRPDPDKGQVPV 508

Length = 567

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 241 GVKVQVGYGLTESSPV------------IAARRPTCNVLGSVGHPINHTEIKIVDAETNE 288
           GV+VQ  YGLTE S +            IA +        SVG  + + E+K +D +T  
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-------NSVGFILPNLEVKFIDPDTGR 381

Query: 289 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 348
            LP  + G + VR   VMQGY+ N   T + +DEDGWL+TGDIG+I            G 
Sbjct: 382 SLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD---------GD 432

Query: 349 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAI 399
           + +++ R K+ I    G  V P ELE   L    +    V+       G I
Sbjct: 433 IFIVD-RIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 31/180 (17%)

Query: 248 YGLTESSPVIAARRPTCNV--------LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 299
           +G TE SPV      TC +        LGSVG  I     ++VD   N+V P G  G + 
Sbjct: 323 FGQTEMSPV------TCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV-PVGEVGEIV 375

Query: 300 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 359
            R   +M GY+ NP AT +A    GW ++GD+          R    G V V++ R KD 
Sbjct: 376 YRAPTLMSGYWNNPEATAEAFA-GGWFHSGDL---------VRQDEEGYVWVVD-RKKDM 424

Query: 360 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 415
           I+ S GEN+   E+E        I ++ VIG+   +    P A+     ++  +  + L+
Sbjct: 425 II-SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLA 483

Length = 542

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 81.8 bits (203), Expect = 1e-16
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 31/209 (14%)

Query: 225 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSVGHPINHT 277
            G +L   +      +     G ++++  G G+TE++P         +  G++G P    
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGC 401

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAP 336
           E+K+V        P G K  V+V+G  V  GY++ P  T +A DE+G+  +GD   ++ P
Sbjct: 402 EVKLV--------PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDP 453

Query: 337 HH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQ 393
               RG        L+ +GR  +   LS+G   +V PL     +  + L++ +V+ G D+
Sbjct: 454 ADPERG--------LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR 505

Query: 394 RRPGAIIVPDKEEVLMAAKRLSIVHADAS 422
              G ++ P+    L A +RL+ + ADAS
Sbjct: 506 DEIGLLVFPN----LDACRRLAGLLADAS 530

Length = 614

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 46/254 (18%)

Query: 225 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-----AARRPTCNVLGSVGH 272
           GG +L   +      L     G ++    GYG TE++P          R      G +G 
Sbjct: 354 GGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERV-----GLIGL 408

Query: 273 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 332
           P+   E+K+         P G K  V+V+G  V  GY K+P  T  A DE+G+   GD  
Sbjct: 409 PLPGVELKLA--------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAA 460

Query: 333 -WIAPHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVV 388
            ++ P    +G        L+ +GR  +   LSTG   +V  L  +  A  S +I   VV
Sbjct: 461 RFVDPDDPEKG--------LIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVV 512

Query: 389 IGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASE--LSKEKTISLLYGELRKWTSKC-- 444
            GQD+   G +  P+      A ++L+     A E  +     +++L   L    ++   
Sbjct: 513 AGQDRAFIGLLAWPN----PAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGG 568

Query: 445 -SFQIGPIHVVDEP 457
            S +I    ++ EP
Sbjct: 569 SSSRIARALLMTEP 582

Length = 624

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
            ++  D +   +LP G  G +++R   +M+GY  NP AT +AL +DG+  TGD+G     
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLG----- 414

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG---QDQR 394
           ++RG      G  V + R  D++ L  G  V P E+E A      +    V+G     + 
Sbjct: 415 YTRGD-----GQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468

Query: 395 RPGAIIVPD-----KEEVLMAAKR 413
            P A ++P       E  LMAA R
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 330
           G  +   EI+I + E    LP    G + VRG  +M GYF++  +    L  DGWL+TGD
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-----LRSSLIRQ 385
           +G++             G L + GRAKD I+++ G N+ P ++E  A     LRS     
Sbjct: 446 LGYLL-----------DGYLYITGRAKDLIIIN-GRNIWPQDIEWIAEQEPELRS---GD 490

Query: 386 IVVIGQDQRRPGAIIV 401
                  Q     I++
Sbjct: 491 AAAFSIAQENGEKIVL 506

Length = 579

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.4 bits (199), Expect = 4e-16
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%)

Query: 267 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 326
           L ++G P+   E+++VD +   VLP    G++++RG  V  GY         A D DGWL
Sbjct: 359 LATLGPPLPGLEVRVVDEDGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWL 416

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ- 385
           +TGD+G++             G +V+ GR KD I+++ G N+ P ++E AA R   +R  
Sbjct: 417 DTGDLGYLTE----------EGEVVVCGRVKDVIIMA-GRNIYPTDIERAAARVEGVRPG 465

Query: 386 -IVVIGQD--QRRPG-AIIV-----PDKEEV 407
             V +  D    R G A+ V      D  EV
Sbjct: 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEV 496

Length = 545

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 79.6 bits (197), Expect = 6e-16
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 225 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-AARRPTCNVLGSVGHPINH 276
            G +LP  +      L     G ++ +  G G TE++P       PT    G +G P   
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS-GVIGLPAPG 355

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA- 335
           TE+K+V        P G K  V+V+G  V  GY+++P  T +A DE+G+   GD      
Sbjct: 356 TELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVD 407

Query: 336 PHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQD 392
           P    RG        LV +GR  +   L++G   +V  L +   A  + L++  VV G D
Sbjct: 408 PDDPERG--------LVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD 459

Query: 393 QRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 424
           +   G ++ P+   +    +   +  A A ++
Sbjct: 460 RDEIGLLVFPN---LAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)

Query: 223 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           VS G  L P  ID +  A G+ ++ GYG TE+  ++A         GS+G P     + I
Sbjct: 203 VSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAI 262

Query: 282 VDAETNEVLPAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
           +D E NE LP G +G + VR       + +GY K+P  T+  +    W  TGD       
Sbjct: 263 IDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAI---- 316

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                 +   G     GRA D ++ S+G  + P E+E A +    + +  V+G       
Sbjct: 317 ------KDEDGYFWFVGRADD-VIKSSGYRIGPFEVESALIEHPAVAEAAVVG------- 362

Query: 398 AIIVPDKEEVLMAAKRLSIVHA 419
               PD         R  +V A
Sbjct: 363 ---SPDPV-------RGEVVKA 374

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 34/221 (15%)

Query: 236 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 295
           FY A+GV +   YG TE+     A RP     GS G P+    ++ VD E N V P   +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPV-KNGSSGLPLPGYAVRRVDDEGNPVPPGVGE 368

Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
            +V++    +   Y+ +P   K+A     +  TGD                 G   L GR
Sbjct: 369 LVVRLPWPGMALTYWNDPERYKEAYFGRWYR-TGDWAERDED----------GYFWLHGR 417

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 415
           + D I +S G+ + PLE+E   L    + +  V+G           P K ++++A   L+
Sbjct: 418 SDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPD--------PGKGQIVLAFVVLA 468

Query: 416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 456
               + +EL++         E+R+  ++    IGP  +  +
Sbjct: 469 -AGVEPNELAE---------EIRRHVAR---NIGPHAIPRK 496

Length = 528

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 267 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 326
           +G+ G      E++I D E  E LP G  G + V G  V  GY+ NP A  +A   DGW 
Sbjct: 339 IGTCGFERTGMEVQIQDDEGRE-LPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWF 396

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 386
            TGD+G     H   R     G L + GRA D + +S G NV P E+EE  L    + ++
Sbjct: 397 RTGDLG-----HLDAR-----GFLYITGRASD-MYISGGSNVYPREIEEKLLTHPAVSEV 445

Query: 387 VVIGQDQRRPGAIIVPD 403
            V+G          VPD
Sbjct: 446 AVLG----------VPD 452

Length = 528

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 60/188 (31%), Positives = 79/188 (42%), Gaps = 36/188 (19%)

Query: 227 GSLPMHIDLFYEAIG----VKVQVGYGLTESSPVIAARRP------TCNVLGSVGHPINH 276
           G+ PM      EAI     +  Q  YG TE+  VI   R           L S G P   
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
             + ++D +  EV   G  G + VRG  VM GY+  P  T +A   DGWL+TGD+     
Sbjct: 348 LRVALLDEDGREV-AQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDV----- 400

Query: 337 HHSRGRSRR-CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
                 +R    G   +  R KD IV + G NV P E+E+       + Q+ VIG     
Sbjct: 401 ------AREDEDGFYYIVDRKKDMIV-TGGFNVFPREVEDVLAEHPAVAQVAVIG----- 448

Query: 396 PGAIIVPD 403
                VPD
Sbjct: 449 -----VPD 451

Length = 524

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 238 EAIGVKVQVGYGLTES---SPVIA----------ARRPTCNVLGSVGHPINHTEIKIVDA 284
           E IG  +   YGLTE+   + V A            R        V +P+    + ++D 
Sbjct: 317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPL-QEGVTVLDP 375

Query: 285 ETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342
           +T + +PA  +  G +  RG+ VM+GY KNP AT++A    GW +TGD+  + P      
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPD----- 429

Query: 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 379
                G + ++ R+KD I++S GEN+  +E+E+   R
Sbjct: 430 -----GYIKIKDRSKD-IIISGGENISSIEVEDVLYR 460

Length = 545

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 223 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR-----RPTCNVLGSVGHPINH 276
           VSG  +LP+ + D      G +    YG+TE+   ++ R     RP     G VG P+  
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-----GWVGLPLAG 301

Query: 277 TEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
            E ++VD E    +P    + G ++VRG  +  GY   P AT  A   DGW  TGD+  +
Sbjct: 302 VETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
            P           G+  + GR    ++ S G  +   E+E A L    +R+  V+G
Sbjct: 361 DP----------DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVG 406

Length = 471

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 62/189 (32%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 238 EAIGVKVQVGYGLTESSPVIAARRPTCNVL-----GSVGHPINHTEIKIVDAETNEVLPA 292
           + +G+ V   YG TE++ V+      C  L     GS+G P+   E+ +VD     V P 
Sbjct: 229 DELGLTVNEFYGQTEANLVVG----NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPP- 283

Query: 293 GSKGIVKV-RGSQVM-QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 350
           G  G + V R   VM  GY+ NP AT  A     WL TGD+G           R   G L
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATA-AKFAGDWLLTGDLG----------RRDADGYL 332

Query: 351 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 410
             +GRA D I  S+G  + P E+EE  L+   + +  V+G          VPD E     
Sbjct: 333 WFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVG----------VPDPE----- 376

Query: 411 AKRLSIVHA 419
             R  IV A
Sbjct: 377 --RGEIVKA 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 77.0 bits (189), Expect = 5e-15
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 44/209 (21%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVI------------------AARRPT 263
           ++GG   P  +    + +G +V   YGLTE++ PV+                     R  
Sbjct: 306 LTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQG 365

Query: 264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALD 321
            ++LG         ++ + + ET E +P   K  G + ++GS +M+GY KNP AT +A  
Sbjct: 366 VSILGL-------ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF- 417

Query: 322 EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 381
           + GWLNTGD+G I P           G + ++ R+KD I++S GEN+  +E+E    +  
Sbjct: 418 KHGWLNTGDVGVIHPD----------GHVEIKDRSKD-IIISGGENISSVEVENVLYKYP 466

Query: 382 LIRQIVVIGQDQ----RRPGAIIVPDKEE 406
            + +  V+          P A +V +K E
Sbjct: 467 KVLETAVVAMPHPTWGETPCAFVVLEKGE 495

Length = 579

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 76.9 bits (190), Expect = 6e-15
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 248 YGLTESSPVI-------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 300
           YG TE +P+          RRP     GS G P+ + E ++VD + N+V   G  G +  
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRP-----GSAGRPVLNVETRVVDDDGNDV-APGEVGEIVH 372

Query: 301 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 360
           R  Q+M GY+ +P  T +A    GW ++GD+G +             G + +  R KD I
Sbjct: 373 RSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE----------GYITVVDRKKDMI 421

Query: 361 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI 416
             + GENV   E+EEA      + ++ VIG    +      A++VP K    +    L I
Sbjct: 422 K-TGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP-KAGATVTEDEL-I 478

Query: 417 VHADASELSKEKT 429
            H  A  L+  K 
Sbjct: 479 AHCRAR-LAGFKV 490

Length = 523

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 76.8 bits (189), Expect = 6e-15
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 46/204 (22%)

Query: 225 GGGSLPMHIDLFYEAIGV----KVQVGYGLTES----------SPVIAARRPTCNVLGS- 269
           GGGSL     L  +A  +    K+   YG+TE+           P + + + T   +   
Sbjct: 296 GGGSLSS--RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353

Query: 270 ------------VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 317
                       VG P  H E+KI   E++ V      G +  RG  VM GY+   S T 
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRILTRGPHVMLGYWGQNSETA 407

Query: 318 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 377
             L  DGWL+TGDIGWI             G L L GR+ D I  + GENV P E+E   
Sbjct: 408 SVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 378 LRSSLIRQIVVIGQDQRRPGAIIV 401
            +   +  +VV+G    R   ++V
Sbjct: 457 SQHPGVASVVVVGVPDSRLTEMVV 480

Length = 563

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 26/181 (14%)

Query: 224 SGGGSLPMHIDLFYE-AIGVKVQVGYGLTE------SSPVIAARRPTCNVLGSVGHPINH 276
           SGG  LP+ +  F+E   G+K++ G+G+TE        P     +P     GS+G  +  
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKP-----GSIGLMLPG 373

Query: 277 TEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
            E+ +V  +   +VLP G  G +++RG  V +GY+  P  + +A   D +L TGDIG++ 
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMD 432

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR 394
                       G   L  R KD I+ S G NV P  +E+A      +++++VIG  DQ 
Sbjct: 433 TD----------GYFFLVDRKKDMII-SGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481

Query: 395 R 395
           R
Sbjct: 482 R 482

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 40/193 (20%)

Query: 234 DLFYEAIGVKVQVGYGLTES-------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAET 286
           D F E  GV++   YG+TE+        P    R P      S+G P    E +I D + 
Sbjct: 305 DAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWP------SIGRPGFCYEAEIRD-DH 357

Query: 287 NEVLPAGSKG---IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR- 342
           N  LPAG  G   I  V G  + + Y+ +P AT + L+ DGWL+TGD G++      G  
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYV---DEEGFF 414

Query: 343 ---SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGA 398
               RRC             ++   GENV  +ELE        I+ IVV+G +D  R  A
Sbjct: 415 YFVDRRC------------NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462

Query: 399 I---IVPDKEEVL 408
           I   +V ++ E L
Sbjct: 463 IKAFVVLNEGETL 475

Length = 517

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.1 bits (183), Expect = 3e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 39/171 (22%)

Query: 238 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 297
           E  G++   GYGLTE +  + A+R   + L  VG P+   E+K+VD    E+        
Sbjct: 261 EQQGIRCWCGYGLTEMASTVCAKR--ADGLAGVGSPLPGREVKLVD---GEIW------- 308

Query: 298 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRA 356
             +RG+ +  GY++        ++++GW  T D G W              G L + GR 
Sbjct: 309 --LRGASLALGYWRQ-GQLVPLVNDEGWFATRDRGEWQ------------NGELTILGRL 353

Query: 357 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI-------GQDQRRPGAII 400
            D +  S GE ++P E+E    +  L++Q+ V+       GQ   RP A++
Sbjct: 354 -DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQ---RPVAVV 400

Length = 458

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 74.6 bits (183), Expect = 3e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 238 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAGSK 295
           E +G  +   +G+TE+  V            S   G P+   E+K++DA     L  G  
Sbjct: 332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGET 390

Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           G + VRG     GY K P     + D +GW +TGD+ +              G + + GR
Sbjct: 391 GRLLVRGCSNFGGYLKRPHL--NSTDAEGWFDTGDLAFQDAE----------GYIRINGR 438

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 402
           +KD +++  GEN+  +E+E    +   + Q+ ++     R G    A++VP
Sbjct: 439 SKD-VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 270 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED---GWL 326
           +G+P       I+D +   V P G +G + + G QV  GY  NP  T +A  +D    W 
Sbjct: 274 IGYPKPGLRALILDEDGRPV-PPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWY 332

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 386
            TGD+ ++             G+LV  GR    I L  G  +E  E+E A      + + 
Sbjct: 333 RTGDLVYLED----------DGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEA 381

Query: 387 VVIGQD 392
           VV+   
Sbjct: 382 VVLPVP 387

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 38/209 (18%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV--IAARRP---------TCNVLGSVG 271
           V GG ++P  +   +E +GV+V+  +G+TE SP+  +AA +P           +VL   G
Sbjct: 300 VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG 359

Query: 272 HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 329
           +P    E+KI D    E LP   K  G +KVRG  V   Y++      + LD+DG+ +TG
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415

Query: 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 389
           D+  I  +          G + +  R+KD I  S GE +  ++LE  A+    + +  VI
Sbjct: 416 DVATIDAY----------GYMRITDRSKDVIK-SGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 390 GQDQ----RRPGAIIV------PDKEEVL 408
           G        RP  I+         +EE+L
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEIL 493

Length = 542

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 4e-14
 Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 219 SKAGVSGGG-SLPMHI-DLFYEAIGVKVQVGYGLTES-SPVIA--ARRPTCNVLGSVGHP 273
           S   + GGG ++P  + +   E  G+    GYGLTE+ +   +    RP    LG    P
Sbjct: 306 SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI---P 362

Query: 274 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 330
               + +++D ET E LP G  G + V G QV +GY+  P AT +A  E DG  +  TGD
Sbjct: 363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422

Query: 331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
           +G +             G   +  R K  I  S G  V P E+E    +   I++  VI 
Sbjct: 423 LGRMDEE----------GYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQEACVIA 471

Query: 391 -QDQRRPG----AIIVPDKE 405
             D RR G    A++V   E
Sbjct: 472 TPDPRR-GETVKAVVVLRPE 490

Length = 546

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 40/174 (22%)

Query: 248 YGLTESSPVIAARRPTCNVL---------------GSVGHPINHTEIKIVDAETNEVLPA 292
           YGL ES+  +    P   +                  +G+PI   E++I  +  +     
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRI--SPGDGAAGV 367

Query: 293 GSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 350
             + I  +++RG+ +M GY          +D D W  TGD+G++             G L
Sbjct: 368 AGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLV-----------DGGL 411

Query: 351 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ--IVVIGQDQR--RPGAII 400
           V+ GRAK+ I ++ G N+ P E+E  A +   +R+  +V +G  +   RPG +I
Sbjct: 412 VVCGRAKELITVA-GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464

Length = 525

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 247 GYGLTESSPVIAARRPTCNVL---GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           GYG+TES+ V   R      L    SVG    + + K+VD  T  +LP G+ G + ++G 
Sbjct: 351 GYGMTESTAV-GTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP 409

Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 363
            VM+GY  NP AT+  +D+DGWL TGDI +              G L +  R K+ I+  
Sbjct: 410 GVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED----------GYLYIVDRLKE-IIKY 458

Query: 364 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADA 421
            G  + P +LE   +    I    V            VPDKE  E+ +A     +V    
Sbjct: 459 KGFQIAPADLEAVLISHPEIIDAAVTA----------VPDKECGEIPVAF----VVRRQG 504

Query: 422 SELSKEKTISLL------YGELRK 439
           S LS+E  I+ +      Y ++RK
Sbjct: 505 STLSQEAVINYVAKQVAPYKKVRK 528

Length = 560

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 266 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 324
           ++ + G P++   E+++VDA+ N V P G  G +  RG   ++GY++ P    +A D DG
Sbjct: 356 IIHTQGRPLSPDDEVRVVDADGNPVAP-GEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414

Query: 325 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 384
           +  +GD+            R   G LV+EGR KD I    GE +   E+E   LR   + 
Sbjct: 415 FYRSGDL----------VRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH 463

Query: 385 QIVVIG-QDQ---RRPGAIIVPDKEEVLMAAK 412
              ++   D+    +  A IV  KE  L AA+
Sbjct: 464 DAALVAMPDELLGEKSCAFIVV-KEPPLRAAQ 494

Length = 542

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD--AETNEVLPAGSKG-I 297
           G KV + YG TE+   +  R P     G+   P   +E++IV      +E LP G +G +
Sbjct: 295 GEKVNI-YGTTEAMNSLYMRDPRT---GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

Query: 298 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 357
           V         GY   P AT + L +DGW  T D+  + P           G + + GR  
Sbjct: 351 VVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS----------GTVRILGRVD 399

Query: 358 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKR 413
           D I+ S GEN+ P E+E    R+  + ++VVIG    R G    A +VP + E L +A  
Sbjct: 400 DMII-SGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETL-SADA 457

Query: 414 LSIVHADASELSKEK 428
           L      ASEL+  K
Sbjct: 458 LDTF-CRASELADFK 471

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 223 VSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           VS G +LP  I   + E  G+++  G G TE   +  + RP     G+ G P+   E+K+
Sbjct: 284 VSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343

Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341
           VD +  EV   G  G + VRG     GY+     T++      W  TGD           
Sbjct: 344 VDEDGEEV-ADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGD----------K 391

Query: 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG 397
             R   G     GR+ D + +S G  V P E+E+A L+   + +  V+G +      +P 
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPK 450

Query: 398 AIIVP 402
           A +V 
Sbjct: 451 AFVVL 455

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 36/187 (19%)

Query: 248 YGLTESSPVIAARRPTCNVLG--SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 305
           YG+TE++  IA  +P   + G  S G  + H +I I          A   G + ++   +
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSL 311

Query: 306 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 365
             GY+       Q LD  G   T D+G++               L + GR    I ++ G
Sbjct: 312 ALGYYP------QILDSQGIFETDDLGYLDAQGY----------LHILGRNSQKI-ITGG 354

Query: 366 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADA 421
           ENV P E+E A L + L++ + V+G      G    AI VP    +        +  A  
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIK 410

Query: 422 SELSKEK 428
            +LS  K
Sbjct: 411 DQLSPFK 417

Length = 452

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 281 IVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
           +VD +T + +PA  K  G + +RG+ VM+GY KNP A ++A   +GW ++GD+G   P  
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPD- 443

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                    G + ++ R+KD I++S GEN+  LE+E        + +  V+ +   R G
Sbjct: 444 ---------GYIEIKDRSKD-IIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492

Length = 567

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 247 GYGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 300
           GYG TE SPVI        +  +C     VG PI   ++ IV  ET   + +G  G+V  
Sbjct: 331 GYGTTECSPVITINTVNSPKHESC-----VGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385

Query: 301 RGSQVMQGYFKN-PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           RG+ +  GY           L  + W  TGD+G++  H          G L L+GR
Sbjct: 386 RGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH----------GELFLKGR 431

Length = 539

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 35/172 (20%)

Query: 248 YGLTESSPVI------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           YG TES  V       A   P     G+VG      E++ VD +    LP G  G +  R
Sbjct: 303 YGSTESGAVTFATSEDALSHP-----GTVGKAAPGAELRFVDEDGRP-LPQGEIGEIYSR 356

Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 361
            +      + N    +  +D  G++ +GD+G++             G L L  R +D +V
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD----------GYLFLCDRKRD-MV 405

Query: 362 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAA 411
           +S G N+ P E+E        +    V G          +PD E  E LMA 
Sbjct: 406 ISGGVNIYPAEIEAVLHAVPGVHDCAVFG----------IPDAEFGEALMAV 447

Length = 509

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 248 YGLTE-SSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           YG TE +   IA     A  P       VG P     +KI+D   NEV P G  G + V 
Sbjct: 355 YGSTEVAFATIATPEDLAEAPGT-----VGRPPKGVTVKILDENGNEV-PRGVVGRIFVG 408

Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 361
                +GY       KQ    DG L++GD+G+              G+L ++GR  D IV
Sbjct: 409 NGFPFEGY--TDGRDKQI--IDGLLSSGDVGYFDED----------GLLFVDGRDDDMIV 454

Query: 362 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS--IVHA 419
            S GENV P E+E+       + +  VIG          V D+E      +RL   +V A
Sbjct: 455 -SGGENVFPAEVEDLLAGHPDVVEAAVIG----------VDDEE----FGQRLRAFVVKA 499

Query: 420 DASELSKE 427
             + L ++
Sbjct: 500 PGAALDED 507

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 247 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 306
           G G+T  +       P     GSVG  +   E++I+D + NE LP G  G V        
Sbjct: 299 GGGVTVITSEDWLAHP-----GSVGKAV-LGEVRILDEDGNE-LPPGEIGTVYFEMDGYP 351

Query: 307 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 366
             Y  +P  T  A +  GW+  GD+G++             G L L  R  D I+ S G 
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDED----------GYLYLTDRKSDMII-SGGV 400

Query: 367 NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-ADASELS 425
           N+ P E+E   +    +  + V G          VPD+E   M  +  ++V  AD ++  
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFG----------VPDEE---MGERVKAVVQPADGADAG 447

Query: 426 KEKTISLLYGELRKW 440
                  L  EL  W
Sbjct: 448 DA-----LAAELIAW 457

Length = 502

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 248 YGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           YG +E S V A       RRP      SVG P ++ +++I +    EV   G  G V V+
Sbjct: 286 YGASELSFVTALVDEESERRPN-----SVGRPFHNVQVRICNEAGEEVQK-GEIGTVYVK 339

Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 361
             Q   GY        + L+ DGW+   D+G+              G + + GR K+ I+
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEE----------GFIYIVGREKNMIL 388

Query: 362 LSTGENVEPLELEEAALRSSLIRQIVVIG 390
              G N+ P E+E        + +IVVIG
Sbjct: 389 FG-GINIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 223 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-IAAR----RPTCNVLGSVGHPINH 276
           VS G +LP  +   +YE  G+K+  G G TE   + I+A     +P     G+ G P+  
Sbjct: 267 VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKP-----GATGKPVPG 321

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
            E +IVD + NEV P G  G + VRG    + Y  +    +Q    DGW  TGDI     
Sbjct: 322 YEARIVDDQGNEV-PRGEAGRLAVRGPTGCR-YLDDER--QQEYVRDGWNVTGDIFRQDE 377

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 396
                      G      R+ D IV S G N+   E+E+A L    + +  VIG      
Sbjct: 378 D----------GYFHYVARSDDMIV-SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 397 GAIIV 401
           G I+ 
Sbjct: 427 GQIVC 431

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 271 GHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 329
           G P++   E+++VD   N V P G  G++  RG    +GY+K P     A D +G+  TG
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVV 388
           D+  + P           G +V+ GRAKD I    GE +   E+E   L   ++    +V
Sbjct: 413 DLVRLTPE----------GYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALV 461

Query: 389 IGQDQ---RRPGAIIVPDKEEV 407
              D+    +  A IV     +
Sbjct: 462 SMPDELLGEKSCAFIVVRDPAL 483

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 220 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 279
           +  +  G    +H   F E  GV +  GYG TE++ VIA    +    GS+G      E 
Sbjct: 297 RVALGPGVPAALHAA-FRERFGVDLLDGYGSTETNFVIAVTHGSQRP-GSMGRLAPGFEA 354

Query: 280 KIVDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
           ++VD    E LP G  G + +R  +      GYF  P  T +A   + W +TGD      
Sbjct: 355 RVVDEHDQE-LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRV---- 408

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 378
                  R   G      R KD I    GEN+   E+E+  L
Sbjct: 409 ------VRDADGWFRFVDRIKDAI-RRRGENISSFEVEQVLL 443

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 234 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 293
           + F E  G+K+  G+G TE++  IA         GS+G P    +I I+D +       G
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSC-EVG 377

Query: 294 SKGIVKVRGSQ-----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 348
            +G + +R S      +  GY+++P  T +    DG+ +TGD  W              G
Sbjct: 378 EEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAW----------MDEDG 426

Query: 349 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--KEE 406
            L   GRA D ++ S+G  + P E+E A ++   + +  V G          VPD  + +
Sbjct: 427 YLWFVGRADD-LIKSSGYRIGPFEVESALIQHPAVLECAVTG----------VPDPIRGQ 475

Query: 407 VLMAAKRLSIVHADASELSKE 427
           V+ A   L+  +  + EL KE
Sbjct: 476 VVKATIVLTKGYEPSEELKKE 496

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 41/240 (17%)

Query: 223 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           VS G  L P  I+   +A G+ ++ GYG TE++ +I          GS+G P+    + +
Sbjct: 205 VSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVL 264

Query: 282 VDAETNEVLPAGSKGIVKV--RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 339
           +D E  E+     +  + +  R   +M GY  +P  T  A    G+  TGD         
Sbjct: 265 LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKA------- 316

Query: 340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR--- 395
               R   G L   GRA D +  S+   + P E+E A L    + +  V+   D  R   
Sbjct: 317 ---YRDEDGYLWFVGRADD-VFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAV 372

Query: 396 PGAIIV------PDKE----------EVLMAAKRLSIVHADASELSKEKTISLLYGELRK 439
           P A IV      P +E          E L   KR+  +     EL   KTIS   G++R+
Sbjct: 373 PKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRI-EFVGELP--KTIS---GKIRR 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 330
           G P   TEI+I+D +  E +P G  G + VR      GY     +TK     DG++ +GD
Sbjct: 368 GRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGY--TSGSTKDF--HDGFMASGD 422

Query: 331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
           +G++      GR       L + GR  + IV S GENV P+E+E+       + +  VIG
Sbjct: 423 VGYL---DENGR-------LFVVGRDDEMIV-SGGENVYPIEVEKTLATHPDVAEAAVIG 471

Query: 391 QDQRRPG----AIIVPDKE 405
            D  + G    A +V    
Sbjct: 472 VDDEQYGQRLAAFVVLKPG 490

Length = 537

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)

Query: 168 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK-KIQSAIGISKAGVSGG 226
           G C+T  +   S L  L       +    L P   L  KLV + K  +A   S   V  G
Sbjct: 240 GLCVTGGENTTSLLEILTT---NAVATTCLVPT--LLSKLVSELKSANATVPSLRLVGYG 294

Query: 227 GSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEI 279
           GS  +  D+ F EA GV+    YGL+E+    A   PT +        G+VG P    ++
Sbjct: 295 GSRAIAADVRFIEATGVRTAQVYGLSETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDV 353

Query: 280 KIVDAE-----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
            +   +          P+ S G + ++    M GY+ NP  T + L  DGW+NTGD+   
Sbjct: 354 YLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDL--- 409

Query: 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 385
                    RR  G   ++GR+ + I+   G N+ P E++  A   S +R+
Sbjct: 410 -------LERREDGFFYIKGRSSEMII-CGGVNIAPDEVDRIAEGVSGVRE 452

Length = 540

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 226 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG--------SVGHPIN 275
           GGS   P+ I  + E  GV V   +G+TE+SPV    RP   V G        S G    
Sbjct: 306 GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA 365

Query: 276 HTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSAT----------------K 317
             E +IV+    +V+ +  +  G ++VRG+ V   Y+ +P+                   
Sbjct: 366 SLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN 423

Query: 318 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 377
                DGWL TGD+G +             G L +  RA+D I  S GE +   +LE   
Sbjct: 424 DRFTADGWLRTGDVGSVTRD----------GFLTIHDRARDVI-RSGGEWIYSAQLENYI 472

Query: 378 LRSSLIRQIVVIG-QDQR---RPGAIIV--PDKEEVLMAAKRL 414
           + +  + +  VIG  D +   RP A+ V  P  E     A+RL
Sbjct: 473 MAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515

Length = 576

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 241 GVKVQVGYGLTESSPV--IAARRPTCNVLGS------------VGHPINHTEIKIVDAET 286
             ++   YG TE+ P+  I +R     +L +            VG P++  E++I+    
Sbjct: 315 DAEILTPYGATEALPISSIESR----EILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370

Query: 287 N--------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWI 334
                      L  G  G + V G  V + Y+  P AT+ A   D  G  W   GD+G++
Sbjct: 371 APIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430

Query: 335 APHHSRGRSRRCG 347
                 GR   CG
Sbjct: 431 DAQ---GRLWFCG 440

Length = 552

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 233 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVL 290
           +  F   +GV +   YG TE+   +       + +  GS+G P+    I ++D +   + 
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 291 PAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 346
             G  G + +  +        GY+ +P  T + +    W  TGD+            R  
Sbjct: 282 D-GEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLV----------ERDE 329

Query: 347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--K 404
            G     GRA D I+ S G  + P ++E A L    + +  V+G          VPD  +
Sbjct: 330 DGYFWFIGRADDVII-SAGYRIGPFDVESALLEHPAVAEAAVVG----------VPDPLR 378

Query: 405 EEVLMAAKRLSIVHADASELSKE 427
            E++ A   L   +A + EL++E
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEE 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 238 EAIGVKVQVGYGLTESSPVIAARR---------PTCNVLGSVGHPINHTEIKIVDAETNE 288
                 V   +G+TE++  +   +         P  +  G VG      +I+IV ++   
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST-GLVGRSTG-AQIRIVGSDGLP 374

Query: 289 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 348
            LPAG+ G V +RG+ V++GY  +P+ T      DGWL TGD+G          S    G
Sbjct: 375 -LPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLG----------SLSAAG 422

Query: 349 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQ---RRPGAIIVP 402
            L + GR K+ I    GE + P  +E        + +  V G  DQ       A+IVP
Sbjct: 423 DLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP 479

Length = 534

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG 324
           VL S G       + IVD ++ EVL     G +   G  +  GY++NP A+ +   E DG
Sbjct: 368 VLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDG 427

Query: 325 --WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 374
             WL TGD+G++         R   G L + GR KD +++  G N+ P ++E
Sbjct: 428 RTWLRTGDLGFL---------RD--GELFVTGRLKDMLIVR-GHNLYPQDIE 467

Length = 4334

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 57/237 (24%)

Query: 226 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPV--------------IAARRPTCNVLGS 269
           GGS   P  I  F +  GV+V   +G+TE SP+              +  +R    +L  
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQR---KLLEK 357

Query: 270 VGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 327
            G  I   ++KIV  +  E LP   K  G ++VRG  V+  YF+  ++    L  DGW  
Sbjct: 358 QGRVIYGVDMKIVGDDGRE-LPWDGKAFGDLQVRGPWVIDRYFRGDAS---PLV-DGWFP 412

Query: 328 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV 387
           TGD+  I             G + +  R+KD I  S GE +  +++E  A+    + +  
Sbjct: 413 TGDVATIDAD----------GFMQITDRSKDVIK-SGGEWISSIDIENVAVAHPAVAEAA 461

Query: 388 VIGQDQRRPGAIIVP----DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 440
            I                 D+  +L+  KR        +E+++E+ ++   G++ KW
Sbjct: 462 CIA----------CAHPKWDERPLLVVVKR------PGAEVTREELLAFYEGKVAKW 502

Length = 539

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 18/119 (15%)

Query: 235  LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 294
             + E  G+++  GYG+TE++PVIA   P  N  G+VG  +   E ++      +      
Sbjct: 926  TWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGID-----E 980

Query: 295  KGIVKVRGSQVMQGYFK--NPSATKQALDEDGWLNTGDI------GWIAPHHSRGRSRR 345
             G + VRG  VM GY +  NP   +     DGW +TGDI      G+I     +GR++R
Sbjct: 981  GGRLFVRGPNVMLGYLRAENPGVLEPP--ADGWYDTGDIVTIDEEGFIT---IKGRAKR 1034

Length = 1140

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 247 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 306
            YG TE++    A R T     ++G P+ +    ++D +   ++P G+ G + + G  V 
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

Query: 307 QGYFKNPSATKQALDEDGWLN---------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 357
           +GY   P  T +    D +           TGD+                G L   GR K
Sbjct: 297 RGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLED----------GSLEFLGR-K 345

Query: 358 DTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPDKEEVLMAAKR 413
           D  V   G+ +E  E+E        +    V+        ++  A +  D       A  
Sbjct: 346 DDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADV 405

Query: 414 LSI-VHADASEL 424
               + +   E 
Sbjct: 406 DIALLRSALRER 417

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 266 VLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 324
           +  + G P+    E+ + DA+ N + P G  G +  RG    +GY+K+P     A D +G
Sbjct: 351 IFTTQGRPMSPDDEVWVADADGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409

Query: 325 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 379
           +  +GD+  I P           G + + GR KD I    GE +   E+E   LR
Sbjct: 410 FYCSGDLVSIDP----------DGYITVVGREKDQIN-RGGEKIAAEEIENLLLR 453

Length = 536

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 182 VALIDWLWARIICAILW---PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HIDLFY 237
            AL++ L A+ I  +L     L LL    +   + S     +  +SGG +LP+  +    
Sbjct: 447 AALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLL 506

Query: 238 EAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAG 293
           +   +  ++   YG TE++    +   +  +   V  G P+ +T++ I+D +    LP G
Sbjct: 507 QLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG 565

Query: 294 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVL 352
             G + + G  +  GY   P  T +         TGD+   +A            G L  
Sbjct: 566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD-----------GALEY 614

Query: 353 EGRAKDTIVLSTGENVEPLELEEAALR 379
            GR  D+ V   G  +E  E+E A   
Sbjct: 615 LGRK-DSQVKIRGFRIELGEIEAALAE 640

Length = 642

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 52/234 (22%)

Query: 223 VSGGGSLPMHIDL---FYEAI--GVKVQVGYGLTESSPV--------IAARRP------- 262
           +S G   P+  DL   F   +    ++   YG TE+ PV        +A           
Sbjct: 205 LSAGA--PVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAG 262

Query: 263 TCNVLGSVGHPINHTEIKIVDA--------ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 314
            C     VGHP+   +++I+          + +  LP G  G + V G  V + Y+  P 
Sbjct: 263 VC-----VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317

Query: 315 ATKQA---LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 371
           ATK A        W   GD+G+      +GR       L   GR K   V + G  +  +
Sbjct: 318 ATKLAKISDGNRIWHRMGDLGYFDD---QGR-------LWFCGR-KAHRVETAGGTLFTV 366

Query: 372 ELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADAS 422
            +E+   R   +R+  ++G  +   + P  ++ P    +    +    + A A 
Sbjct: 367 PVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAK 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 247 GYGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
            YG TE++  +       + L      +G PI +T + ++D +   V P G  G + + G
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPV-PVGVPGELYIGG 298

Query: 303 SQVMQGYFKNPSATKQALDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           + V +GY   P  T +    D +         TGD+    P           G L   GR
Sbjct: 299 AGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPD----------GNLEFLGR 348

Query: 356 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVL 408
           A D + +  G  +E  E+E A L    +R+ VV+ ++         A +VP     L
Sbjct: 349 ADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL 404

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 44/188 (23%)

Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKG- 296
           G +V+ GYG +E + VI  R P     GS+G       + I + ET          + G 
Sbjct: 288 GCQVEDGYGSSEGA-VIVVREPGTPP-GSIGRGAP--GVAIYNPETLTECAVARFDAHGA 343

Query: 297 ----------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 346
                     +V   G+   +GY+ NP AT + +   G   +GD+ +          R  
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAY----------RDA 392

Query: 347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 406
            G +   GR  D + +  GEN+    +E   LR   I ++ V            VPD E 
Sbjct: 393 DGWIYFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA----------VPD-ER 440

Query: 407 V---LMAA 411
           V   +MAA
Sbjct: 441 VGDQVMAA 448

Length = 540

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 223 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           V+GG  L P  ++ +    G+ +  GYG TE+  + A  +      GS+G      +++I
Sbjct: 297 VTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQI 356

Query: 282 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
           +D   N VLP G++G + +R            Y  NP  T   +  D ++ TGD      
Sbjct: 357 IDDNGN-VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGD------ 408

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRR 395
              RG      G     GRA D ++ S+G  + P E+E A +   +++   VV   D  R
Sbjct: 409 ---RGIMDE-DGYFWFVGRADD-VINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 396 PGAIIVPDKEEVLMAAKRLSIVHADASELSKE 427
            G ++   K  V++A + LS    D  +L+KE
Sbjct: 464 -GEVV---KAFVVLAPQFLS---HDPEQLTKE 488

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 247 GYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
            YG TE++    A               +G P+ +T + ++D +   V P G  G + + 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV-PVGVVGELYIG 325

Query: 302 GSQVMQGYFKNPSATKQA-LDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLE 353
           G  V +GY   P  T +  + +            TGD+                G L   
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLV----------RYLPDGNLEFL 375

Query: 354 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 388
           GR  D + +  G  +E  E+E A LR   +R+ VV
Sbjct: 376 GRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 251 TESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLP---AGSKGIVKVRGS--Q 304
           TE+  ++ A  P   V  GS+G P+   E  +++ + + + P    G  G + ++     
Sbjct: 242 TETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS 301

Query: 305 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 364
           + +GY  N      +   DGW  TGD+ +          R   G     GRA D I  + 
Sbjct: 302 MFRGYLGNEERYASSF-VDGWYLTGDLAY----------RDEDGYFWFVGRADDVI-KTA 349

Query: 365 GENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 401
           G  V P E+E A +    + +  VIG+     G I+ 
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVK 386

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 230 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 289
           P  I  F    G  V  G+G TE   V   R P     G++G       + IVD +T   
Sbjct: 279 PGDIARFARRFGCVVVDGFGSTEGG-VAITRTPDTPP-GALGPLPP--GVAIVDPDTGTE 334

Query: 290 LPAGSKG-------------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
            P                  +V   G    +GY+ +P A  + +   G   +GD+ +   
Sbjct: 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDA 393

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 396
                      G     GR  D + +  GEN+    +E   LR     ++ V        
Sbjct: 394 D----------GYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA------ 436

Query: 397 GAIIVPDKE--EVLMAA 411
               VPD    + +MAA
Sbjct: 437 ----VPDPVVGDQVMAA 449

Length = 529

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)

Query: 248 YGLTE------SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           YG TE       + V AA  P      ++G PI +T++ ++D +  + +P G  G + + 
Sbjct: 237 YGPTETTIWSTCARVTAADGP-----VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIG 290

Query: 302 GSQVMQGYFKNPSATKQAL-----DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 354
           G  V +GY   P  T +       D+ G     TGD           R  R  G L   G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGD---------LVR-WRPDGRLEYLG 340

Query: 355 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 394
           RA D + +  G  +E  E+E A      +   VV+ +++ 
Sbjct: 341 RADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEG 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 248 YGLTES------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           YGLTE+       P    RRP      S+G  I + E+ ++  + +E  P     +V  R
Sbjct: 309 YGLTEAFRSTYLPPEEVDRRPD-----SIGKAIPNAEVLVLREDGSECAPGEEGELVH-R 362

Query: 302 GSQVMQGYFKNPSATKQ------------ALDEDG-WLNTGDIGWIAPHHSRGRSRRCGG 348
           G+ V  GY+ +P  T +             L E   W  +GD             R   G
Sbjct: 363 GALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR----------RDEEG 410

Query: 349 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 390
            L   GR +D ++ ++G  V P E+EE A  + L+ + V  G
Sbjct: 411 FLYFVGR-RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 248 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
           YG TE++  + + + T  +L       +G       + I+D E  E LP G KG + + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVG 349

Query: 303 SQVMQGYFKNPSATKQALDEDGWL---NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 359
             V +GY  NP  T +A           TGD G I             G L  +GR    
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-----------DGQLFYQGRLDFQ 398

Query: 360 IVLSTGENVEPLELEEAALRSSLIRQIVVI 389
           I L  G  +E  ++E    +SS I   VV+
Sbjct: 399 IKLH-GYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 225 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIV 282
           GGG  P  +     A G+ V   YG++E          T    G V  G P++   +++ 
Sbjct: 159 GGGPAPAPVLDAAAAAGINVVRTYGMSE----------TSG--GCVYDGVPLDGVRVRVE 206

Query: 283 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342
           D            G + + G  + +GY +NP        E GW  T D+G +        
Sbjct: 207 D------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGAL---DD--- 246

Query: 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 401
                GVL + GRA D  + + G  V P  +E A      +    V G    R G  +V
Sbjct: 247 -----GVLTVLGRA-DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVV 299

Length = 358

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 230 PMHIDLFYEAI-GVKVQVGYGLTES-----SPVIAARRPTCNVLGSV--GHPINHTEIKI 281
           P H+     A  G+++  GYG TE+       VI           S+  G PI +T + I
Sbjct: 254 PAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDE---AADSIPIGRPIPNTTVYI 310

Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN------TGDIGWIA 335
           +D E   V P G  G + V G  +  GY   P  T +    D +        TGD     
Sbjct: 311 LDEEGQPV-PIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD----- 364

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQ 391
                 R  R  G +   GR  D  V   G  +E  E+E+A L+   +R+  V+      
Sbjct: 365 ----LAR-WRPDGNIEFLGRI-DRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAA 418

Query: 392 DQRRPGAIIVPD 403
             +R  A +V  
Sbjct: 419 GDKRLVAYVVAR 430

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 327
           ++IVD +T    PAG+ G + V G  V  GY++ P  T++              E  WL 
Sbjct: 381 VRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440

Query: 328 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 361
           TGD+G+I+            G L + GR KD ++
Sbjct: 441 TGDLGFIS-----------EGELFIVGRIKDLLI 463

Length = 578

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 25/139 (17%)

Query: 268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-WL 326
           G+VG  +   ++ I+D +  E LP G  G +   G +  + Y  +P+ T +A   DG W 
Sbjct: 328 GTVGRAM-FGDLHILDDDGAE-LPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 386
             GDIG++             G L L  RA   I +S G N+ P E E   +    +   
Sbjct: 385 TVGDIGYVDE----------DGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADA 433

Query: 387 VVIGQDQRRPGAIIVPDKE 405
            V G          VP+++
Sbjct: 434 AVFG----------VPNED 442

Length = 511

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)

Query: 235 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 294
           L+ +  G+++  GYG+TE +PV++   P     G+VG  +   + +++      V     
Sbjct: 498 LWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLL-----SVPGIEQ 552

Query: 295 KGIVKVRGSQVMQGYFK--------NPSA-TKQALDEDGWLNTGDIGWIAPHHSRGRSRR 345
            G ++++G  +M GY +         P+A   +   E GW +TGDI              
Sbjct: 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ-------- 604

Query: 346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ-IVVIGQDQRRPGAIIV--P 402
             G + ++GRAK    ++ GE V    +E+ AL  S  +Q    I  D  +  A+++   
Sbjct: 605 --GFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT 661

Query: 403 DKE---EVLMAAKR 413
           D E   E L    R
Sbjct: 662 DSELTREKLQQYAR 675

Length = 718

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 248 YGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           YG TE++  I     TC   G     +G PI +    I+DA    V P G  G + + G 
Sbjct: 803 YGPTEAA--IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-PVGVLGELYLAGR 859

Query: 304 QVMQGYFKNPSATKQALDEDGWLN------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 357
            + +GY   P  T +      ++       TGD           R R   GV+   GR  
Sbjct: 860 GLARGYHGRPGLTAERFVPSPFVAGERMYRTGD---------LARYRA-DGVIEYAGRID 909

Query: 358 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE-----EVLMAAK 412
             + L  G  +E  E+E   L    +R+  V+  D ++    +V + E     E L A  
Sbjct: 910 HQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHL 968

Query: 413 RLSI 416
             S+
Sbjct: 969 AASL 972

Length = 5163

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 41/166 (24%)

Query: 269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ---------- 318
           S G         IVD +T   LP G  G + + G  + +GY+  P  T++          
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 319 --------ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 370
                   A D+  WL TGD+G               G L + GR  D IV+  G N  P
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVID-GRNHYP 510

Query: 371 LELE-EAALRSSLIRQIVVIGQDQRRPGAIIVP--DKEEVLMAAKR 413
            ++E   A  S ++R+  V         A  VP  D E +++ A+R
Sbjct: 511 QDIEATVAEASPMVRRGYV--------TAFTVPAEDNERLVIVAER 548

Length = 612

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 248 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
           YG TE++  + +   T  +L       +G+    + + I+D E    LP G +G + + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 303 SQVMQGYFKNPSATKQAL-DEDGW--LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 359
             V +GY  NP  T +A    DG    +TGD G++             G+L  +GR    
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-----------DGLLFYQGRIDFQ 400

Query: 360 IVLSTGENVEPLELEE--AALR-SSLIRQIVVI 389
           I L    N   +ELEE    LR SS +   VV+
Sbjct: 401 IKL----NGYRIELEEIEQNLRQSSYVESAVVV 429

Length = 503

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 220  KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGHPINHT 277
            K  V GG +LP  +     A G+ +   YG TE++  +   +       +  +G PI + 
Sbjct: 3314 KRIVCGGEALPADLQQQVFA-GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR 3372

Query: 278  EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW------LNTGDI 331
               I+D     V P G+ G + + G  + +GY   P  T +    D +        TGD+
Sbjct: 3373 ACYILDGSLEPV-PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431

Query: 332  GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 391
                         R  GV+   GR  D  V   G  +E  E+E   L    +R+ VV+  
Sbjct: 3432 A----------RYRADGVIEYIGRV-DHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480

Query: 392  DQRRPGAIIVPDKEE 406
            D R+  A +VP+ E 
Sbjct: 3481 DGRQLVAYVVPEDEA 3495

Length = 5163

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 248 YGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 304
           YG +E    S              S+G P+  T+  ++DA    V P G  G + + G+ 
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPV-PVGVPGELYIGGAG 303

Query: 305 VMQGYFKNPSATKQALDEDGWLN--------TGDIGWIAPHHSRGRSRRCGGVLVLEGRA 356
           V +GY   P  T +    + +          TGD+            RR  G L   GR 
Sbjct: 304 VARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLV----------RRRADGQLEYLGRI 353

Query: 357 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPD 403
            D + +  G  +E  E+E A      + + VV+        R+  A IV D
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 223 VSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAA--RRPTCNVLGS-------VGH 272
           +  GGS      +        +V+ GYGLTE+SPV+     +     L            
Sbjct: 275 LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 334

Query: 273 PINH--TEIKIVDAETNEVLPAGSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
            +      +++ D E   V P   K +  V+++G  +  GY+ N  AT+ AL  DG+  T
Sbjct: 335 GLPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 393

Query: 329 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 374
           GDI                G + ++ R KD I    GE +  ++LE
Sbjct: 394 GDIAVWDEE----------GYVEIKDRLKDLIKSG-GEWISSVDLE 428

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 280 KIVDAETNEVLPA-GSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIA 335
            ++D + +EV P  G  G +   G  V  GY+K+P  T +   E DG  +   GD   + 
Sbjct: 199 VVLDEDGSEVPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVE 257

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
                       G + L GR    I  + GE V P E+EEA      +   +V+G    R
Sbjct: 258 A----------DGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 396 PGAIIV----------PDKEEVL 408
            G  +V           D  E+ 
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELR 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 33/167 (19%)

Query: 268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDGW 325
           GSVG  +    + I D + NE LPAG  G V     ++   Y  +P  T  A       W
Sbjct: 323 GSVGRSVLGD-LHICDDDGNE-LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW 380

Query: 326 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 385
              GD+G +             G L L  R K  +++S G N+ P E E A      +  
Sbjct: 381 TTVGDLGSVDED----------GYLYLADR-KSFMIISGGVNIYPQETENALTMHPAVHD 429

Query: 386 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA-----SELSKE 427
           + VIG          VPD E   M  +  +++          EL++E
Sbjct: 430 VAVIG----------VPDPE---MGEQVKAVIQLVEGIRGSDELARE 463

Length = 501

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 327
           G++G  +   EI++V A        G +G + VRG  + +GY+  P +    +  +GWL+
Sbjct: 313 GTLGRVLPPYEIRVV-APDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP---VANEGWLD 368

Query: 328 TGDIGWIAPHHSRGRSRRC---GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 384
           T             R R C    G +    RA DT V+  G NV+P E+E   +    + 
Sbjct: 369 T-------------RDRVCIDSDGWVTYRCRADDTEVIG-GVNVDPREVERLIIEDEAVA 414

Query: 385 QIVVIG 390
           +  V+ 
Sbjct: 415 EAAVVA 420

Length = 705

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ-----------------ALDED 323
           IVD ET   LP G  G + + G+ +  GY+  P  T                   A D+ 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 324 GWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 381
            W+ TGD G +              G L + GR KD +++  G N  P +LE  A  ++
Sbjct: 464 LWVRTGDYGVYF------------DGELYITGRVKDLVIID-GRNHYPQDLEYTAQEAT 509

Length = 631

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WL 326
           G P+ + +  ++D +  +  P    G + + G  V  GY+ +P  T +       G    
Sbjct: 303 GKPLPNQKFYVLDEDGRDC-PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLY 361

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLE--GRAKDTIVLSTGENVEPLELEEAALRSSLIR 384
            TGD          GR R  G    +E  GR  D  V   G  VE  E+E A  R   ++
Sbjct: 362 RTGD---------LGRYRPDG---TIEFLGR-ADHQVKIRGYRVELGEIEAALARHPGVQ 408

Query: 385 QIVVIGQDQRRPGAI---IVPDKEEVLMAA 411
           + VV+        A+   +V +    + AA
Sbjct: 409 RAVVVVVGDGGAKALAAFVVAEDGAAVDAA 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 247  GYGLTESSPVIAARR-PTCNVLGS----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
            GYG TE++  +   +    +  G+    +G P+ +    ++D + N  LP G  G + + 
Sbjct: 4841 GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLN-PLPVGVAGELYLG 4899

Query: 302  GSQVMQGYFKNPSATKQ-----ALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 354
            G  V +GY + P+ T +          G     TGD+       +R R+    GV+   G
Sbjct: 4900 GEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDL-------ARYRA---DGVIDYLG 4949

Query: 355  RAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQD---QRRPGAIIVPDKEEVLMA 410
            R  D  V   G  +E  E+ EA LR    +R+ VVI Q+    ++    +VP    +  A
Sbjct: 4950 RV-DHQVKIRGFRIELGEI-EARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADA 5007

Query: 411  AKR 413
             + 
Sbjct: 5008 DEA 5010

Length = 5163

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 59  QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM-----YTAVRNLKDDLQ 113
               L +      GD+ L +LP          +     G  L+           L D ++
Sbjct: 159 LAAGLAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIE 218

Query: 114 RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 148
           +Y+   +  VP +   L    +++ +  S+ R V+
Sbjct: 219 KYKVTVLYGVPTLLRLLLKAPEEKKYDLSSLRLVL 253

Length = 412

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 255 PVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 314
            V +  +P+   L   G  +   ++ IV+ +T  +      G + V  S     Y+    
Sbjct: 340 RVDSEDKPSSLPLQDSGMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTG 399

Query: 315 ATKQALD-----------EDGWLNTGDIGWIAP-HHSRGRSRRCGGVLVLEGRAKDTIVL 362
            TK   +           E+ ++ TG +G++ P  HS G     G + V+ G   +T+ +
Sbjct: 400 MTKNTFEVFPNSSSDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVV-GSIDETLEV 458

Query: 363 STGENVEPLELEEAALRS 380
           S G    P ++E   LR 
Sbjct: 459 S-GLRHNPDDIEATVLRV 475

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.92
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.8
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.62
PRK09188	365	serine/threonine protein kinase; Provisional	99.57
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.97
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.95
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.66
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.3
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.1
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.0
PLN02247	606	indole-3-acetic acid-amido synthetase	97.96
PLN02249	597	indole-3-acetic acid-amido synthetase	97.93
PLN02620	612	indole-3-acetic acid-amido synthetase	97.66
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	92.78

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-65  Score=536.67  Aligned_cols=411  Identities=32%  Similarity=0.451  Sum_probs=350.1

Q ss_pred             eeeeeehhhhhhhcccCCCCC-CCce-----EEEeeeCCCCCCcceehhhh-hHh-------hhccc---CCCCCCEEEE
Q 012261           15 MSSFFSMFKVIFITLFFSRRD-LPLF-----SFVLIDLNTWMPIPKMTNFQ-IRS-------LYDIV---PAENGDKFLS   77 (467)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~-~~~~-----~i~~TSGTTG~PK~v~~t~~-~~~-------~~~~~---~~~~~d~~l~   77 (467)
                      .++++|+++++++|.-...+. .||.     +|+|||||||.||||++||+ +.+       .....   .....|++++
T Consensus       228 gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lS  307 (691)
T KOG1256|consen  228 GVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLS  307 (691)
T ss_pred             CeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEE
Confidence            477999999999995333332 2443     99999999999999999998 111       11111   2233699999


Q ss_pred             ECChhHHHHHHHhHHHhhcCceEEec--CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 012261           78 MLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI  155 (467)
Q Consensus        78 ~lPl~h~~g~~~~~~~l~~G~~~v~~--~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (467)
                      +|||+|++.++.....++.|+++.|+  |+..+.++++..+||++.++|+.|+++.+.+++++.+++.+++.++++|++.
T Consensus       308 yLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~  387 (691)
T KOG1256|consen  308 YLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAY  387 (691)
T ss_pred             eCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999988888999999996  7899999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHH
Q 012261          156 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHID  234 (467)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~  234 (467)
                      .....    +..|...                           .-..++|+++|++++..|| ..|.+++|++|+++++.
T Consensus       388 k~~~~----~~~G~~~---------------------------~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~  436 (691)
T KOG1256|consen  388 KLEHR----LMKGKSR---------------------------SRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVL  436 (691)
T ss_pred             HHHHH----hhCCCCc---------------------------ccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHH
Confidence            65221    2233322                           0356899999999999998 67999999999999999


Q ss_pred             HHHHHh-CCceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCc
Q 012261          235 LFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP  313 (467)
Q Consensus       235 ~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~  313 (467)
                      .|++.. |++|+++||+||+++..+...+.+...|++|.|.|+++++++|++.-...+.|..|||++||+++|+||+++|
T Consensus       437 ~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p  516 (691)
T KOG1256|consen  437 TFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDP  516 (691)
T ss_pred             HHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCCh
Confidence            999855 8999999999999966666666555899999999999999999776666777779999999999999999999


Q ss_pred             cccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC-
Q 012261          314 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-  392 (467)
Q Consensus       314 ~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-  392 (467)
                      +.|.+++++|||+||||+|++++          +|.+.|+||+|++||+++|++|.|..||++..+.+.|.+.+|.|.. 
T Consensus       517 ~~T~e~ideDGWLhTGDiG~~~p----------~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~  586 (691)
T KOG1256|consen  517 EKTAEAIDEDGWLHTGDIGEWDP----------NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL  586 (691)
T ss_pred             HHHhhhhccccccccccceeECC----------CccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc
Confidence            99999999999999999999999          9999999999999999999999999999999999999999999987 


Q ss_pred             CCceEEEEecChHHHHHHHHHccccccCccc-CCHHHHHHHHHHHHHHHhh----cCCCccccEEEeCCCCCCCCCccCC
Q 012261          393 QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       393 ~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~----~~~~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      +++++|+|+++++....++...++. .+..+ +....+.+.+..++.++.+    ..+++++.|++.+++|+.+||++||
T Consensus       587 ~~~LvaiVvpd~e~~~~~a~~~~~~-~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltP  665 (691)
T KOG1256|consen  587 RSFLVAIVVPDPEVLKSWAAKDGVK-GTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTP  665 (691)
T ss_pred             hhcEEEEEecChhhchhhHHHccCc-hhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccch
Confidence            6789999999999999999865655 33333 3455666666666655533    3338999999999999999999997

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=5.9e-65  Score=540.21  Aligned_cols=387  Identities=33%  Similarity=0.543  Sum_probs=342.3

Q ss_pred             CCCCCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccC-CCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEe-c
Q 012261           32 SRRDLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVP-AENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY-T  103 (467)
Q Consensus        32 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~-~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~-~  103 (467)
                      +...-.+++|+|||||||.||||++||.     +..+...++ ++++|+.+++||++|++++.+. ...+..|++..+ .
T Consensus       187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~  266 (613)
T COG1022         187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE  266 (613)
T ss_pred             CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecC
Confidence            4555567799999999999999999997     445556665 8899999999999999999874 444666666555 4


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      +++.+++++++.+||++.++|++|+.+.+.+++++.+.+..++.+|+++++.+...........+               
T Consensus       267 ~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~---------------  331 (613)
T COG1022         267 DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGG---------------  331 (613)
T ss_pred             CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccC---------------
Confidence            89999999999999999999999999999999999999999999999999886443322221111               


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                   ...++..+++++|+++++.+| .+|.+++||+++++++..|++.+|+++.++||+||+++..+.+++
T Consensus       332 -------------~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~  398 (613)
T COG1022         332 -------------PLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPP  398 (613)
T ss_pred             -------------CcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccc
Confidence                         123444589999999999998 779999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          263 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       263 ~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      .....|++|.|+|+++++|+|           .|||+||||++|+|||++|+.|.++|++||||+|||+|.+++      
T Consensus       399 ~~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~------  461 (613)
T COG1022         399 DRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE------  461 (613)
T ss_pred             cCcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC------
Confidence            999999999999999999988           699999999999999999999999999999999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHHHHHcccccc-Cc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHA-DA  421 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~-~~  421 (467)
                          +|+|+++||+||+|++++|+||.|+.||..+.++|.|.+++|+|+.+.+++|+|+++.+.+..|++..+.... +.
T Consensus       462 ----~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~  537 (613)
T COG1022         462 ----DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASR  537 (613)
T ss_pred             ----CCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcceEEEEeCCHHHHHHHHHhccccccCCH
Confidence                9999999999999999999999999999999999999999999988999999999999999999988874432 22


Q ss_pred             -ccCCHHHHHHHHHHHHHHHhhcCC--CccccEEEeCCCCCCCCCccCC
Q 012261          422 -SELSKEKTISLLYGELRKWTSKCS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       422 -~~~~~~~l~~~~~~~l~~~~~~~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                       +-...+++++.+.+++...+...+  |++++|.+.+++|+.++|++||
T Consensus       538 ~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~  586 (613)
T COG1022         538 EELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTP  586 (613)
T ss_pred             HHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCcccc
Confidence             234567888888888888777766  9999999999999999999986

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-62  Score=492.40  Aligned_cols=409  Identities=25%  Similarity=0.341  Sum_probs=360.1

Q ss_pred             ceeeeeehhhhhhhcccCCCCCCCce-----EEEeeeCCCCCCcceehhhh-h-H---hhh-cccCCCCCCEEEEECChh
Q 012261           14 YMSSFFSMFKVIFITLFFSRRDLPLF-----SFVLIDLNTWMPIPKMTNFQ-I-R---SLY-DIVPAENGDKFLSMLPPW   82 (467)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~TSGTTG~PK~v~~t~~-~-~---~~~-~~~~~~~~d~~l~~lPl~   82 (467)
                      -.+++++|++++++|...+....||.     +|+|||||||.||||+++|+ + +   ... ....+.+.|+++.++||.
T Consensus       210 p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLA  289 (678)
T KOG1180|consen  210 PDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLA  289 (678)
T ss_pred             CCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHH
Confidence            45899999999999998844444443     99999999999999999998 1 1   111 223678899999999999


Q ss_pred             HHHHHHHhHHHhhcCceEEecCHHHHH-----------HHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 012261           83 HVYERACGYFIFSRGIELMYTAVRNLK-----------DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARA  151 (467)
Q Consensus        83 h~~g~~~~~~~l~~G~~~v~~~~~~l~-----------~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (467)
                      |++.+..-+.+++.|+++-+.++.+|.           .++...+||+|.++|..|.++.+.+.+++...+.+.+.+|+.
T Consensus       290 HIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~  369 (678)
T KOG1180|consen  290 HILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWT  369 (678)
T ss_pred             HHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            999999999999999999997655443           356788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCch
Q 012261          152 LIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLP  230 (467)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~  230 (467)
                      ++...+.....+                                  -+...+++.++|+++|..+| .+|.+++||+|++
T Consensus       370 aY~~K~~~~~~~----------------------------------g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS  415 (678)
T KOG1180|consen  370 AYERKLSLIERN----------------------------------GPGSPLLDALVFKKIRALLGGNLRYILSGGAPLS  415 (678)
T ss_pred             HHHHHHHHHhcc----------------------------------CCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCC
Confidence            987665544221                                  24567899999999999997 6899999999999


Q ss_pred             HHHHHHHHHh-CCceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCC--ceEEEEeCCCcCc
Q 012261          231 MHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQVMQ  307 (467)
Q Consensus       231 ~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~--~GEL~v~~~~~~~  307 (467)
                      ++..+|+.-+ .+++.++||+||+|+..+...+++...|.+|.|++-++++++|.+.+.-.+.+.  .||||++|+++..
T Consensus       416 ~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~  495 (678)
T KOG1180|consen  416 PDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTM  495 (678)
T ss_pred             HHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccCh
Confidence            9999999854 779999999999999999999988889999999999999999987766666555  8999999999999


Q ss_pred             ccCCCccccccccCC-CC--eeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcc
Q 012261          308 GYFKNPSATKQALDE-DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  384 (467)
Q Consensus       308 gY~~~~~~t~~~~~~-~g--w~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~  384 (467)
                      |||+|++.|...|.. ||  ||+|||+|++++          ||.|.|++|+||++|+.+|++|+...+|.+++.+|.|.
T Consensus       496 gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~p----------dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~  565 (678)
T KOG1180|consen  496 GYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHP----------DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVD  565 (678)
T ss_pred             hhhCChhhhhhhceecCCcEEEeccccceecC----------CCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchh
Confidence            999999999999988 99  999999999999          99999999999999999999999999999999999999


Q ss_pred             eEEEEeeCC-CceEEEEecChHHHHHHHHHccccccCccc-CCHHHHHHHHHHHHHHHhhcCC----CccccEEEeCCCC
Q 012261          385 QIVVIGQDQ-RRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSKCS----FQIGPIHVVDEPF  458 (467)
Q Consensus       385 ~~~Vvg~~~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~~~----~~i~~i~~~~~~~  458 (467)
                      +.||+++.. .+++++|||+...+..+++..|+...+..+ +...++++.+.+.|.++.....    |.|..|++.++||
T Consensus       566 NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~W  645 (678)
T KOG1180|consen  566 NICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPW  645 (678)
T ss_pred             heEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCc
Confidence            999999875 579999999999999999999988766655 4677899999988888754433    7789999999999


Q ss_pred             CCCCCccC
Q 012261          459 TVNFLCLA  466 (467)
Q Consensus       459 ~~~~g~~~  466 (467)
                      |+|||.+|
T Consensus       646 TPenGlvT  653 (678)
T KOG1180|consen  646 TPENGLVT  653 (678)
T ss_pred             CCCccccH
Confidence            99999987

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=9.6e-59  Score=509.28  Aligned_cols=390  Identities=26%  Similarity=0.395  Sum_probs=323.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh-----Hhhhcc-----cCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDI-----VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~-----~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--  103 (467)
                      -.+++|+|||||||.||||++||+.     ......     .+++++|++++++|++|++++...+.++..|+++++.  
T Consensus       223 ~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~  302 (666)
T PLN02614        223 SDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG  302 (666)
T ss_pred             CceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            3456999999999999999999982     111122     2577899999999999999987666668899999884  


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.+++++||++.++|++|+++.+.+...+...+.+.++.++++++......     ..+...            
T Consensus       303 ~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~------------  365 (666)
T PLN02614        303 DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM-----KKGQSH------------  365 (666)
T ss_pred             CHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----HcCCCC------------
Confidence            688999999999999999999999999988877777777777778887776432211     111100            


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc-CCceEEEEecCCchHHHHHHHHHh-CCceeeccccccccccccccC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAI-GISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lr~i~~gG~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                    ...+.+.+.+++++++..+ +.+|.+++||+++++++.++++.+ +++++++||+||+++..+...
T Consensus       366 --------------~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  431 (666)
T PLN02614        366 --------------VEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSL  431 (666)
T ss_pred             --------------cccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeec
Confidence                          1124466778899999998 488999999999999888888887 589999999999986555443


Q ss_pred             CCC-CCCCcccccCCCeEEEEEeC-C-CCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261          262 PTC-NVLGSVGHPINHTEIKIVDA-E-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  338 (467)
Q Consensus       262 ~~~-~~~g~vG~p~~~~~v~i~d~-~-~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~  338 (467)
                      +.+ ...+++|.|.|+++++|+|+ + .+.++++|+.|||+++||++|.|||++|+.|..+| .||||+|||+|++|+  
T Consensus       432 ~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~--  508 (666)
T PLN02614        432 PDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQP--  508 (666)
T ss_pred             cccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcC--
Confidence            332 35789999999999999983 3 24789999999999999999999999999999999 589999999999999  


Q ss_pred             CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC-CCceEEEEecChHHHHHHHHHcccc
Q 012261          339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                              ||+|+|+||+||+|++++|+||+|.|||++|.+||+|.+++|+|++ +++++|+|+++.+.+..|+.+.++.
T Consensus       509 --------dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~  580 (666)
T PLN02614        509 --------NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVS  580 (666)
T ss_pred             --------CCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCC
Confidence                    9999999999999998789999999999999999999999999998 5789999999999999999988765


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHH--hhcCC--CccccEEEeCCCCCCCCCccCC
Q 012261          418 HADASELSKEKTISLLYGELRKW--TSKCS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~--~~~~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      ......+..+++++.+.+.+.+.  ++.++  ++|++|++++++|+++||.+||
T Consensus       581 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTp  634 (666)
T PLN02614        581 GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTP  634 (666)
T ss_pred             cCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCH
Confidence            21112245677888888887666  44455  9999999999999999999996

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-58  Score=506.42  Aligned_cols=405  Identities=23%  Similarity=0.290  Sum_probs=329.7

Q ss_pred             eeeeehhhhhhhccc----CCCCCCCceEEEeeeCCCCCCcceehhhhh--H---hhhcc--cCCCCCCEEEEECChhHH
Q 012261           16 SSFFSMFKVIFITLF----FSRRDLPLFSFVLIDLNTWMPIPKMTNFQI--R---SLYDI--VPAENGDKFLSMLPPWHV   84 (467)
Q Consensus        16 ~~~~~~~~~~~~~~~----~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~--~---~~~~~--~~~~~~d~~l~~lPl~h~   84 (467)
                      +++.+++++.+....    .+...-.+++|+|||||||.||||++||+.  .   .....  ....+.|++++++|++|+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi  359 (746)
T PTZ00342        280 ISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHI  359 (746)
T ss_pred             CEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHH
Confidence            445566665433211    112223466999999999999999999981  1   11111  122356899999999999


Q ss_pred             HHHHHhHHHhhcCceEEec--CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Q 012261           85 YERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAF  162 (467)
Q Consensus        85 ~g~~~~~~~l~~G~~~v~~--~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (467)
                      +++...+.++..|+++++.  ++..+++++++++||++.++|++|+++.+.+++.+...+.+.+.++++++..+..... 
T Consensus       360 ~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-  438 (746)
T PTZ00342        360 YERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-  438 (746)
T ss_pred             HHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-
Confidence            9998878889999999984  6889999999999999999999999999999888888888899999999877655321 


Q ss_pred             hhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHhhcC-CceEEEEecCCchHHHHHHHH-
Q 012261          163 KRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK--LVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE-  238 (467)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~-  238 (467)
                           |.                              .+.+.+.  .+++++++.++ ++|.+++||+++++++.++++ 
T Consensus       439 -----~~------------------------------~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~  483 (746)
T PTZ00342        439 -----GG------------------------------FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSV  483 (746)
T ss_pred             -----CC------------------------------cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHH
Confidence                 11                              0112222  27888999984 789999999999999977665 


Q ss_pred             HhCCceeeccccccccccccccCCCCCCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccc
Q 012261          239 AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  317 (467)
Q Consensus       239 ~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~  317 (467)
                      .+|++++++||+||+++..+...+....++++|.|+ |+++++++|+++....+.+..|||+++||++|.|||++|+.|.
T Consensus       484 ~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~  563 (746)
T PTZ00342        484 LLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTK  563 (746)
T ss_pred             hcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhh
Confidence            679999999999999877776666566789999998 9999999986655555556689999999999999999999999


Q ss_pred             cccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC-CCce
Q 012261          318 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRP  396 (467)
Q Consensus       318 ~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~  396 (467)
                      .+|++||||+|||+|++++          ||+++|+||+||+|++++|++|+|.+||++|.+||.|.+|+|+|++ .+++
T Consensus       564 ~~f~~dGW~~TGDig~~d~----------dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~  633 (746)
T PTZ00342        564 NAFTEDGYFKTGDIVQINK----------NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGP  633 (746)
T ss_pred             hhcCcCCcccCCcEEEECC----------CCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCcccc
Confidence            9998899999999999999          9999999999999998899999999999999999999999999986 4589


Q ss_pred             EEEEecChHHHHHHHHHccc------cccCc------ccCCHHHHHHHHHHHHHHH--hhcCC--CccccEEEeCCCCCC
Q 012261          397 GAIIVPDKEEVLMAAKRLSI------VHADA------SELSKEKTISLLYGELRKW--TSKCS--FQIGPIHVVDEPFTV  460 (467)
Q Consensus       397 ~a~vv~~~~~~~~~~~~~~~------~~~~~------~~~~~~~l~~~~~~~l~~~--~~~~~--~~i~~i~~~~~~~~~  460 (467)
                      +|+|+++++.+..|+++.++      ...+.      ..+..+++++.+.+.+.+.  +..+.  |+|++|++++++|++
T Consensus       634 ~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~  713 (746)
T PTZ00342        634 LAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT  713 (746)
T ss_pred             EEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC
Confidence            99999999999999987543      11111      1234556788888888887  43455  999999999999999


Q ss_pred             CCCccCC
Q 012261          461 NFLCLAL  467 (467)
Q Consensus       461 ~~g~~~~  467 (467)
                       +|.+||
T Consensus       714 -~~~lTp  719 (746)
T PTZ00342        714 -NNYLTP  719 (746)
T ss_pred             -CCccCh
Confidence             568987

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=4e-57  Score=498.75  Aligned_cols=413  Identities=24%  Similarity=0.319  Sum_probs=331.7

Q ss_pred             eeeeehhhhhhhcccCCCC-----CCCceEEEeeeCCCCCCcceehhhhh-----Hhhhcc-cCCCCCCEEEEECChhHH
Q 012261           16 SSFFSMFKVIFITLFFSRR-----DLPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDI-VPAENGDKFLSMLPPWHV   84 (467)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~-~~~~~~d~~l~~lPl~h~   84 (467)
                      +++.+++++...+...+..     .-.+++|+|||||||.||||++||+.     ...... .++.++|++++++|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi  304 (696)
T PLN02387        225 WTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHI  304 (696)
T ss_pred             cEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHH
Confidence            3456677776665433221     22345999999999999999999981     122222 357889999999999999


Q ss_pred             HHHHHhHHHhhcCceEEecCH-----------HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 012261           85 YERACGYFIFSRGIELMYTAV-----------RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI  153 (467)
Q Consensus        85 ~g~~~~~~~l~~G~~~v~~~~-----------~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (467)
                      +++...+.++..|+++.+..+           ..++.+++.++||++.++|++++++.+.........+.+.+.++++++
T Consensus       305 ~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~  384 (696)
T PLN02387        305 LELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAY  384 (696)
T ss_pred             HHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            999877777888888776422           234568999999999999999999999888888788888888888887


Q ss_pred             HHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc-CCceEEEEecCCchHH
Q 012261          154 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAI-GISKAGVSGGGSLPMH  232 (467)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lr~i~~gG~~l~~~  232 (467)
                      ........      +...     .+                  -...+.+++.+++++++..+ +++|.+++||++++++
T Consensus       385 ~~~~~~~~------~~~~-----~~------------------~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~  435 (696)
T PLN02387        385 KRRLAAIE------GSWF-----GA------------------WGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGD  435 (696)
T ss_pred             HHHHHHhc------cCCc-----cc------------------ccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHH
Confidence            64332210      0000     00                  00134577889999999988 4789999999999999


Q ss_pred             HHHHHH-HhCCceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCCC-ccc--CCCCceEEEEeCCCcCcc
Q 012261          233 IDLFYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-EVL--PAGSKGIVKVRGSQVMQG  308 (467)
Q Consensus       233 ~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~-~~~--~~g~~GEL~v~~~~~~~g  308 (467)
                      +.++++ .+|++++++||+||+++..+.+...+...+++|.|+|+++++++|++.+ ..+  .++..|||+++|+++|.|
T Consensus       436 ~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~G  515 (696)
T PLN02387        436 TQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLG  515 (696)
T ss_pred             HHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccch
Confidence            988877 4699999999999998777666655567799999999999999995433 322  344579999999999999


Q ss_pred             cCCCcccccccc--CCCC--eeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcc
Q 012261          309 YFKNPSATKQAL--DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  384 (467)
Q Consensus       309 Y~~~~~~t~~~~--~~~g--w~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~  384 (467)
                      ||++|+.|..+|  +++|  ||+|||+|++++          ||+++|+||+||+||+++|++|+|.+||++|.+||.|.
T Consensus       516 Y~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~  585 (696)
T PLN02387        516 YFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----------DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVD  585 (696)
T ss_pred             hcCCHHHHhhhhccccCCCceeecCceEEECC----------CCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCee
Confidence            999999999998  3456  999999999999          99999999999999987899999999999999999999


Q ss_pred             eEEEEeeC-CCceEEEEecChHHHHHHHHHccccccCccc-CCHHHHHHHHHHHHHHHhh--cCC--CccccEEEeCCCC
Q 012261          385 QIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTS--KCS--FQIGPIHVVDEPF  458 (467)
Q Consensus       385 ~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~--~~~--~~i~~i~~~~~~~  458 (467)
                      +++|+|++ +++++|+|+++++.+..|+++.++......+ +..+++.+.+.+.+.+.+.  .+.  ++|++|++++++|
T Consensus       586 ~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~  665 (696)
T PLN02387        586 NIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPW  665 (696)
T ss_pred             EEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCC
Confidence            99999998 6789999999999999999988765443333 4566788888888888733  344  8999999999999


Q ss_pred             CCCCCccCC
Q 012261          459 TVNFLCLAL  467 (467)
Q Consensus       459 ~~~~g~~~~  467 (467)
                      ++|||++||
T Consensus       666 t~~~g~lT~  674 (696)
T PLN02387        666 TPESGLVTA  674 (696)
T ss_pred             CCCCCcCCh
Confidence            999999996

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.8e-56  Score=490.96  Aligned_cols=389  Identities=26%  Similarity=0.395  Sum_probs=318.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh-----HhhhcccC-----CCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVP-----AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~-----~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--  103 (467)
                      -.+++|+|||||||.||||++||+.     ......++     ++++|++++++|++|++++...+.++..|+++++.  
T Consensus       220 dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~  299 (660)
T PLN02861        220 TDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQG  299 (660)
T ss_pred             CceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            3456999999999999999999981     12222222     46789999999999999988777789999999884  


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.+++++||++.++|++|+++.+.+...+...+.+.+.+++++++.......     .+...            
T Consensus       300 ~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~-----~~~~~------------  362 (660)
T PLN02861        300 DIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR-----KGLKQ------------  362 (660)
T ss_pred             CHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh-----cCCCC------------
Confidence            6889999999999999999999999999998888888888999999988876644321     11100            


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHHHHHHHhCC-ceeeccccccccccccccC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~  261 (467)
                                    ...+...+.+++++++..++ .+|.+++||+++++++.++++.++. .++++||+||+++.++...
T Consensus       363 --------------~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~  428 (660)
T PLN02861        363 --------------EEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSI  428 (660)
T ss_pred             --------------cCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecc
Confidence                          01123456778889999995 7899999999999999888887764 7999999999986555443


Q ss_pred             CC-CCCCCcccccCCCeEEEEEe-CCCC-cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261          262 PT-CNVLGSVGHPINHTEIKIVD-AETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  338 (467)
Q Consensus       262 ~~-~~~~g~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~  338 (467)
                      .. ....+++|.|+++++++++| ++.+ ..+++++.|||+++|+++|.|||++|+.|..+| .||||+|||+|++|+  
T Consensus       429 ~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~--  505 (660)
T PLN02861        429 ANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQP--  505 (660)
T ss_pred             cccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECC--
Confidence            32 23578999999999999998 3434 344566789999999999999999999999999 589999999999999  


Q ss_pred             CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC-CceEEEEecChHHHHHHHHHcccc
Q 012261          339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-RRPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-~~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                              ||+++|.||+||+|++++|++|+|.+||++|.+||.|.+++|+|.++ +.++|+|+++.+++..|+.+.++.
T Consensus       506 --------dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~  577 (660)
T PLN02861        506 --------NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKT  577 (660)
T ss_pred             --------CCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCC
Confidence                    99999999999999987899999999999999999999999999984 679999999999999999887642


Q ss_pred             ccCccc-CCHHHHHHHHHHHHHHHhhc--CC--CccccEEEeCCCCCCCCCccCC
Q 012261          418 HADASE-LSKEKTISLLYGELRKWTSK--CS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       418 ~~~~~~-~~~~~l~~~~~~~l~~~~~~--~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                       ....+ +...+.++.+.+++.+.++.  +.  ++|++|++.+++|+++||.+||
T Consensus       578 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~  631 (660)
T PLN02861        578 -GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITP  631 (660)
T ss_pred             -CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCH
Confidence             11112 23345666666777665443  22  8999999999999999999996

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.8e-56  Score=487.43  Aligned_cols=408  Identities=26%  Similarity=0.404  Sum_probs=334.1

Q ss_pred             eeehhhhhhhcccCC-----CCCCCceEEEeeeCCCCCCcceehhhhh--H---hhh---cc--cCCCCCCEEEEECChh
Q 012261           18 FFSMFKVIFITLFFS-----RRDLPLFSFVLIDLNTWMPIPKMTNFQI--R---SLY---DI--VPAENGDKFLSMLPPW   82 (467)
Q Consensus        18 ~~~~~~~~~~~~~~~-----~~~~~~~~i~~TSGTTG~PK~v~~t~~~--~---~~~---~~--~~~~~~d~~l~~lPl~   82 (467)
                      +++++++...+.-.+     ...-.+++|+|||||||.||||++||+.  .   ...   ..  .+++++|++++++|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~  276 (660)
T PLN02430        197 TYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLA  276 (660)
T ss_pred             EEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHH
Confidence            445555554443211     1223466999999999999999999981  1   111   11  2567899999999999


Q ss_pred             HHHHHHHhHHHhhcCceEEec--CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 012261           83 HVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  160 (467)
Q Consensus        83 h~~g~~~~~~~l~~G~~~v~~--~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (467)
                      |++++...+.++..|+++++.  ++..+++++++.+||++.++|++|+++.+.+.+.+...+.+.+.+++++++.+....
T Consensus       277 H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
T PLN02430        277 HILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWM  356 (660)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            999998777778999999874  578899999999999999999999999999998888888888889988888765443


Q ss_pred             HhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHHHHHHH
Q 012261          161 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA  239 (467)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~~  239 (467)
                      ..     +...                          ...+.+++.++++++++.+| .+|.+++||+++++++.++++.
T Consensus       357 ~~-----~~~~--------------------------~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~  405 (660)
T PLN02430        357 NR-----GYSH--------------------------KKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV  405 (660)
T ss_pred             hc-----CCCC--------------------------CCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH
Confidence            21     1100                          11234667889999999995 7899999999999999888887


Q ss_pred             hC-CceeeccccccccccccccCCCC-CCCCcccccCCCeEEEEEe-CCCC-cccCCCCceEEEEeCCCcCcccCCCccc
Q 012261          240 IG-VKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVD-AETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSA  315 (467)
Q Consensus       240 ~g-~~v~~~YG~TE~~~~~~~~~~~~-~~~g~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEL~v~~~~~~~gY~~~~~~  315 (467)
                      ++ ..++++||+||+++..+...+.+ ..+|++|.|.+++++++++ ++.+ .+++.+..|||+++|++++.|||++|+.
T Consensus       406 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~  485 (660)
T PLN02430        406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPEL  485 (660)
T ss_pred             hcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHH
Confidence            75 68999999999987766554433 3579999999999999987 3433 4566667899999999999999999999


Q ss_pred             cccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC-CC
Q 012261          316 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QR  394 (467)
Q Consensus       316 t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~  394 (467)
                      |..+| .||||+|||+|++++          ||+++|.||+||+|++++|++|+|.+||++|.+||.|.+++|+|+. ++
T Consensus       486 t~~~~-~dGw~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~  554 (660)
T PLN02430        486 TEEVM-KDGWFHTGDIGEILP----------NGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKS  554 (660)
T ss_pred             hhhhh-hccceeccceEEECC----------CCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcc
Confidence            99998 699999999999999          9999999999999998889999999999999999999999999987 57


Q ss_pred             ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhh--cCC--CccccEEEeCCCCCCCCCccCC
Q 012261          395 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS--KCS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       395 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      +++|+|+++++.+..|++..++......-...+++.+.+.+.+.+.++  .++  ++|++|++.+++|+++||++||
T Consensus       555 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~  631 (660)
T PLN02430        555 MLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTA  631 (660)
T ss_pred             eEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCCh
Confidence            899999999999999998877642111224567788889888888843  455  8999999999999999999996

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-55  Score=484.48  Aligned_cols=388  Identities=26%  Similarity=0.370  Sum_probs=323.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--CHHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNL  108 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--~~~~l  108 (467)
                      -.+++|+|||||||.||||++||+     +......+++.++|++++++|++|++++...+.++..|+++++.  ++..+
T Consensus       221 dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~  300 (651)
T PLN02736        221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKL  300 (651)
T ss_pred             cceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHH
Confidence            345699999999999999999998     23444567888999999999999999998777889999999885  57889


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.+++++||++.++|++|+.+.+.+...+...+.++++++++++..+....     ..+..                  
T Consensus       301 ~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------------------  357 (651)
T PLN02736        301 MDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQAL-----ENGKN------------------  357 (651)
T ss_pred             HHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HcCCC------------------
Confidence            9999999999999999999999999888888889999988888876653221     11111                  


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCCCCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTCNV  266 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~~~~  266 (467)
                                 ...+.+.+++++++..++ ++|.+++||+++++++.++++ .+|+++++.||+||+++..+........
T Consensus       358 -----------~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~  426 (651)
T PLN02736        358 -----------PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNL  426 (651)
T ss_pred             -----------CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCC
Confidence                       012345667788888885 789999999999999966655 6799999999999998776666555567


Q ss_pred             CCcccccCCCeEEEEEeCCCCc---ccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          267 LGSVGHPINHTEIKIVDAETNE---VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~---~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      .+++|.|.|+++++++|.+.+.   ...++..|||+++||++|.|||++|+.|...|++||||+|||+|++++       
T Consensus       427 ~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~-------  499 (651)
T PLN02736        427 SGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP-------  499 (651)
T ss_pred             CCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC-------
Confidence            7999999999999999844332   233445799999999999999999999999998899999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC-CCceEEEEecChHHHHHHHHHccccccCcc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADAS  422 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  422 (467)
                         ||.++|.||+||+|++++|++|+|.|||++|.+||.|.+|+|+|.+ .+.+.|+|+++++.+..+++..++......
T Consensus       500 ---dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~  576 (651)
T PLN02736        500 ---GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLK  576 (651)
T ss_pred             ---CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHH
Confidence               9999999999999998789999999999999999999999999976 467999999999988888887765422222


Q ss_pred             c-CCHHHHHHHHHHHHHHHhhc--CC--CccccEEEeCCCCCCCCCccCC
Q 012261          423 E-LSKEKTISLLYGELRKWTSK--CS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       423 ~-~~~~~l~~~~~~~l~~~~~~--~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      + +..+++++.+.+.+.++++.  ++  ++|++|++++++|+++||.+|+
T Consensus       577 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~  626 (651)
T PLN02736        577 QLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTP  626 (651)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCCh
Confidence            2 34567778888878777433  44  8999999999999999999986

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-55  Score=465.00  Aligned_cols=322  Identities=28%  Similarity=0.392  Sum_probs=285.2

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHH-hhcCceEEe---cCHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY---TAVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~-l~~G~~~v~---~~~~  106 (467)
                      -.+.+|.|||||||.||||++||+-     .+..........|+.++.+|++|++|+...+.+ +..|++++.   +++.
T Consensus       184 dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~  263 (537)
T KOG1176|consen  184 DDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAE  263 (537)
T ss_pred             CCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHH
Confidence            4566999999999999999999991     122233556668999999999999999988886 666666666   3799


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.+++|++|++.++|..+..|.+..        ..                                          
T Consensus       264 ~~~~~i~kykvt~~~~vP~~~~~l~~~p--------~~------------------------------------------  293 (537)
T KOG1176|consen  264 LFLDLIEKYKVTHLFLVPPVLNMLAKSP--------IV------------------------------------------  293 (537)
T ss_pred             HHHHHHHHhCEEEEEcChHHHHHHhcCC--------cc------------------------------------------
Confidence            9999999999999999999999998731        00                                          


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC-CceeeccccccccccccccCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                               ...++++++.+.+||+++++++ .++.+.++ ..+.++||+||+++..+.+...+
T Consensus       294 -------------------------~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~  348 (537)
T KOG1176|consen  294 -------------------------KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP  348 (537)
T ss_pred             -------------------------CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc
Confidence                                     0167788899999999999998 66667887 89999999999998888887665


Q ss_pred             C-CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 N-VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~-~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      + +++++|.++++++..+.+ ++|+.+++++.|||+++|+++|.|||+||++|+..|+++|||+|||+|++|+       
T Consensus       349 e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~-------  420 (537)
T KOG1176|consen  349 ERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE-------  420 (537)
T ss_pred             cCcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC-------
Confidence            4 899999999988888877 8999999999999999999999999999999999998889999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||+|+|.||+||+||. +|++|+|.|||.+|..||.|.||||+|.+|+.    ++|+||.+++              
T Consensus       421 ---DG~l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g--------------  482 (537)
T KOG1176|consen  421 ---DGYLYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG--------------  482 (537)
T ss_pred             ---CCeEEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC--------------
Confidence               9999999999999996 99999999999999999999999999999875    5599999764              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCcc
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  465 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~  465 (467)
                        +.++.++++++++++|..|     +.++++.++++.|.+.+|||
T Consensus       483 --~~lte~di~~~v~k~l~~y-----~~~~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  483 --STLTEKDIIEYVRKKLPAY-----KLPGGVVFVDELPKTPNGKI  521 (537)
T ss_pred             --CcCCHHHHHHHHHhhCChh-----hccCeEEEeccCCCCCcchH
Confidence              7789999999999999998     68899999999999999996

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-54  Score=476.43  Aligned_cols=384  Identities=24%  Similarity=0.343  Sum_probs=315.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----Hhhhccc----C-CCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecCHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIV----P-AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~----~-~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~~~  106 (467)
                      .+++|+|||||||.||||++||+.     ......+    + ..++|++++++|++|++++......+..|+++++.++.
T Consensus       265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~  344 (700)
T PTZ00216        265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPR  344 (700)
T ss_pred             cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHH
Confidence            356999999999999999999981     1122111    2 46789999999999999987766668889888887777


Q ss_pred             HHHH-------HHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261          107 NLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  179 (467)
Q Consensus       107 ~l~~-------~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (467)
                      .+.+       ++++++||++.++|++++++.+.....+...+.+.++++++++..+.....     .|.          
T Consensus       345 ~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~----------  409 (700)
T PTZ00216        345 TLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK-----EGK----------  409 (700)
T ss_pred             HhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-----cCC----------
Confidence            7666       688999999999999999999998888888888888888888765533221     111          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHHHHHHHH-hCCceeeccccccccccc
Q 012261          180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVI  257 (467)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~~~~~~~-~g~~v~~~YG~TE~~~~~  257 (467)
                                          ...+++.++|++++..++ .+|.+++||+++++++.++++. ++ +++++||+||+++..
T Consensus       410 --------------------~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~  468 (700)
T PTZ00216        410 --------------------DTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCG  468 (700)
T ss_pred             --------------------CCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccc
Confidence                                122457788889988885 7899999999999999777775 47 999999999998776


Q ss_pred             cccCCCCCCCCcccccCCCeEEEEEeCCC-CcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcC
Q 012261          258 AARRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  336 (467)
Q Consensus       258 ~~~~~~~~~~g~vG~p~~~~~v~i~d~~~-~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~  336 (467)
                      +.........+++|.|+++++++++|.+. ....+++..|||+++|++++.|||++|+.|..+|+.||||+|||+|++++
T Consensus       469 ~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~  548 (700)
T PTZ00216        469 GIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA  548 (700)
T ss_pred             cccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC
Confidence            66655555779999999999999998543 23345667899999999999999999999999998899999999999999


Q ss_pred             CCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcce---EEEEeeCCCceEEEEecChHHHHHHHHH
Q 012261          337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIVPDKEEVLMAAKR  413 (467)
Q Consensus       337 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~---~~Vvg~~~~~~~a~vv~~~~~~~~~~~~  413 (467)
                                ||.++|+||+||+|++++|++|+|.+||++|.+||.|.+   +++++..+++++|+|+++.+.+..++++
T Consensus       549 ----------dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~  618 (700)
T PTZ00216        549 ----------NGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKE  618 (700)
T ss_pred             ----------CCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHH
Confidence                      999999999999998679999999999999999999996   4444556778999999999999999988


Q ss_pred             ccccccCccc-CCHHHHHHHHHHHHHHHhh--cCC--CccccEEEeCCCCCCCCCccCC
Q 012261          414 LSIVHADASE-LSKEKTISLLYGELRKWTS--KCS--FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       414 ~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~--~~~--~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      .++. .+..+ +..+++++.+.+.+.+.++  .+.  ++|++|++++++|+++||.+||
T Consensus       619 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~  676 (700)
T PTZ00216        619 HGIE-GEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTA  676 (700)
T ss_pred             cCCC-CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCCh
Confidence            7754 22222 4566788888888887743  333  8999999999999999999996

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.2e-50  Score=430.39  Aligned_cols=325  Identities=30%  Similarity=0.468  Sum_probs=280.0

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccC--CCCCCEEEEECChhHHHHHHHhHHH-hhcCceEEec----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVP--AENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~--~~~~d~~l~~lPl~h~~g~~~~~~~-l~~G~~~v~~----  103 (467)
                      -.++.++|||||||.||+|++||+     .......++  ++++|++++++|++|++|+...+.+ +..|+++++.    
T Consensus       171 ~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~  250 (534)
T COG0318         171 DDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEP  250 (534)
T ss_pred             CCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCC
Confidence            345699999999999999999997     344445666  8999999999999999999987776 9999998884    


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..++..+.++++|++.++|+++..+++.....-                                            
T Consensus       251 f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~--------------------------------------------  286 (534)
T COG0318         251 FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD--------------------------------------------  286 (534)
T ss_pred             cCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc--------------------------------------------
Confidence             47789999999999999999999999877422110                                            


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecCCchHHH-HHHHHHhC-Cceeeccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  259 (467)
                                                     .++. .+|.+++||+++++++ +++.+.++ ..+++.||+||+++..+.
T Consensus       287 -------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  335 (534)
T COG0318         287 -------------------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTI  335 (534)
T ss_pred             -------------------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeec
Confidence                                           1122 3699999999999999 55555776 579999999999988877


Q ss_pred             cCCCC--CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCC
Q 012261          260 RRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  337 (467)
Q Consensus       260 ~~~~~--~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~  337 (467)
                      .....  ...+++|.|+|+++++|+|++++.++| |+.|||+++||+++.|||++|+.|...|+++|||+|||+|++|+ 
T Consensus       336 ~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~-  413 (534)
T COG0318         336 NPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDE-  413 (534)
T ss_pred             CCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcC-
Confidence            77665  467888999999999999988777777 99999999999999999999999999886569999999999999 


Q ss_pred             CCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHH
Q 012261          338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  413 (467)
Q Consensus       338 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~  413 (467)
                               +|+++|.||.||+|+. +|+||+|.|||+++.+||.|.+++|+|.+++.    +.|+|+++++.       
T Consensus       414 ---------~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~-------  476 (534)
T COG0318         414 ---------DGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG-------  476 (534)
T ss_pred             ---------CccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC-------
Confidence                     9999999999999995 99999999999999999999999999998764    55888876431       


Q ss_pred             ccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          414 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                            + ...+.+++.+++++++..|     +.|+.|.++++.|.+.+||+.
T Consensus       477 ------~-~~~~~~~i~~~~~~~l~~~-----~~P~~v~~v~~lP~t~sGKi~  517 (534)
T COG0318         477 ------D-AELTAEELRAFLRKRLALY-----KVPRIVVFVDELPRTASGKID  517 (534)
T ss_pred             ------C-CCCCHHHHHHHHHhhhhcc-----cCCeEEEEeCCCCCCCchhhh
Confidence                  0 2347899999999999999     688999999999999999974

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.3e-49  Score=415.79  Aligned_cols=324  Identities=21%  Similarity=0.204  Sum_probs=275.1

Q ss_pred             CCCCCceEEEeeeCCCCCCcceehhhh------hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec--
Q 012261           33 RRDLPLFSFVLIDLNTWMPIPKMTNFQ------IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  103 (467)
Q Consensus        33 ~~~~~~~~i~~TSGTTG~PK~v~~t~~------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~--  103 (467)
                      ...-.|.+|+|||||||.||||+++|+      .......+.+.++|++.+..++.|++|... .+.+|.+|++.+++  
T Consensus       168 ~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg  247 (528)
T COG0365         168 LPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDG  247 (528)
T ss_pred             cCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCC
Confidence            444567799999999999999999997      223334577789999999999999999887 56779999999875  


Q ss_pred             ----CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261          104 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  179 (467)
Q Consensus       104 ----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (467)
                          ++..+++.++++++|.++..|+.++.|.+.-.        .                                   
T Consensus       248 ~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------~-----------------------------------  284 (528)
T COG0365         248 RPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------G-----------------------------------  284 (528)
T ss_pred             CCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------c-----------------------------------
Confidence                27889999999999999999999999987311        0                                   


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeecccccccccccc
Q 012261          180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIA  258 (467)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~  258 (467)
                                                      -+.++++||.+.++|||+++++.+++ +.+|+++.+.||+||+++...
T Consensus       285 --------------------------------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~  332 (528)
T COG0365         285 --------------------------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFI  332 (528)
T ss_pred             --------------------------------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCcccc
Confidence                                            02677888999999999999995554 567999999999999996666


Q ss_pred             ccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC--CcCcccCCCccccccccCCCCeeecccEEEEcC
Q 012261          259 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  336 (467)
Q Consensus       259 ~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~--~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~  336 (467)
                      ...+ ..++++.|.|+||+++.++|.+ |+++++|+ |+|+++.+  +++++||++|+.+.+++++. ||.|||.+++|+
T Consensus       333 ~~~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~De  408 (528)
T COG0365         333 AGRP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDE  408 (528)
T ss_pred             CCCC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEcc
Confidence            6545 4455666999999999999966 99999999 99999987  99999999999999998755 999999999999


Q ss_pred             CCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHH
Q 012261          337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  412 (467)
Q Consensus       337 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  412 (467)
                                ||++||.||.||+||+ .|++|.|.|||++|.+||.|.|++|||.+|+    .+.|+|+++++.      
T Consensus       409 ----------dGy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~------  471 (528)
T COG0365         409 ----------DGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGV------  471 (528)
T ss_pred             ----------CCCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCC------
Confidence                      9999999999999996 8999999999999999999999999999775    366899998542      


Q ss_pred             HccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCcc
Q 012261          413 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  465 (467)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~  465 (467)
                                ..+  +|.+.+++.+++...+. ..|++|.++++.|++.+|||
T Consensus       472 ----------~~~--~L~~ei~~~vr~~~~~~-~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         472 ----------EPN--ELAEEIRRHVARNIGPH-AIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             ----------ChH--HHHHHHHHHHHhccCcc-cCCceEEEecCCCCCCcccH
Confidence                      112  66666666665544443 59999999999999999997

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.1e-48  Score=426.12  Aligned_cols=341  Identities=21%  Similarity=0.349  Sum_probs=276.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCC--CCCEEEEECChhHHHHHHHh-HHHhhcCceEEecC----
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAE--NGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTA----  104 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~--~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~~----  104 (467)
                      .+++|+|||||||.||||++||+.     ......++..  ++|++++++|++|++++... +.++..|+++++.+    
T Consensus       210 d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~  289 (614)
T PRK08180        210 TIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPT  289 (614)
T ss_pred             ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCcc
Confidence            466999999999999999999982     2223334443  56899999999999998654 45699999998842    


Q ss_pred             ---HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          105 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       105 ---~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                         ...+++.+++++||++.++|+.+..|.+.....    +..                                     
T Consensus       290 ~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~----~~~-------------------------------------  328 (614)
T PRK08180        290 PGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD----AAL-------------------------------------  328 (614)
T ss_pred             chhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc----hhh-------------------------------------
Confidence               246788899999999999999999998743221    000                                     


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHH-----hC--Cceeecccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----IG--VKVQVGYGLTESS  254 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~-----~g--~~v~~~YG~TE~~  254 (467)
                                                    ....++++|.+++||+++++++.+.++.     +|  +++++.||+||++
T Consensus       329 ------------------------------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~  378 (614)
T PRK08180        329 ------------------------------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETA  378 (614)
T ss_pred             ------------------------------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccC
Confidence                                          0123566799999999999998555443     33  6899999999998


Q ss_pred             ccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEE
Q 012261          255 PVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  334 (467)
Q Consensus       255 ~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~  334 (467)
                      ++.+........++++|.|.++++++++|.        |+.|||+++|++++.|||++|+.+...|++||||+|||+|++
T Consensus       379 ~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~  450 (614)
T PRK08180        379 PSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRF  450 (614)
T ss_pred             CceEecccccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEe
Confidence            776655444456789999999999999873        347999999999999999999999999988999999999999


Q ss_pred             c----CCCCCCCccccCceEEEEccCCCeeeeCCceeec--cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHH
Q 012261          335 A----PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE--PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL  408 (467)
Q Consensus       335 ~----~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~--p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~  408 (467)
                      +    +          +|.++|.||+||+|++++|++|+  |.|+|.++.+||.|++++|+|.+++.++|+|+++++...
T Consensus       451 ~~~~d~----------~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~~  520 (614)
T PRK08180        451 VDPADP----------ERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACR  520 (614)
T ss_pred             cCCcCC----------CCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHHH
Confidence            3    4          78999999999999888999777  778889999999999999999999999999999988766


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCC---CccccEEEeCCCCCCCCCccCC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS---FQIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      .++.+.. .......++.+++.+++++.|+++++...   ++|++|.+++++|++.+|++|+
T Consensus       521 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~  581 (614)
T PRK08180        521 RLAGLLA-DASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITD  581 (614)
T ss_pred             HHHhhcc-cCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCc
Confidence            5554431 00001124678899999999999986654   4899999999999999999985

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-49  Score=394.65  Aligned_cols=324  Identities=24%  Similarity=0.347  Sum_probs=281.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~~  105 (467)
                      ..+..|+|||||||.|||+.+||.     +......+++.+.+++.+..|++|++|.+. .+.+|..|++++++    ++
T Consensus       234 dd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~  313 (596)
T KOG1177|consen  234 DDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDP  313 (596)
T ss_pred             CCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCCh
Confidence            456799999999999999999997     445556678888889999999999999665 56679999999994    69


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      .+.+++|+++++|.++++|+.+..+.+..+.+                                                
T Consensus       314 k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~------------------------------------------------  345 (596)
T KOG1177|consen  314 KDALQAISNEKCTTLYGTPTMFVDLLNIPQKQ------------------------------------------------  345 (596)
T ss_pred             HHHHHHHHhhceEEEecChHHHHHHhcchhhc------------------------------------------------
Confidence            99999999999999999999999998643322                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCC-ceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGV-KVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~-~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 +.+++++|-++.||+++|+++.+. .+.... .+...||+||++++.++...+
T Consensus       346 ---------------------------~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~  398 (596)
T KOG1177|consen  346 ---------------------------QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLG  398 (596)
T ss_pred             ---------------------------cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCC
Confidence                                       144556699999999999999554 445543 488899999999888877655


Q ss_pred             C---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCC
Q 012261          264 C---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  340 (467)
Q Consensus       264 ~---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~  340 (467)
                      +   +...++|+.+++.+..++| +.|..+|-|..|||++||++.|.|||++++.|..+...|.||+|||+|.+++    
T Consensus       399 D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----  473 (596)
T KOG1177|consen  399 DPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----  473 (596)
T ss_pred             CCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----
Confidence            4   4678999999999999999 8899999999999999999999999999999999998899999999999999    


Q ss_pred             CCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceE----EEEecChHHHHHHHHHccc
Q 012261          341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI  416 (467)
Q Consensus       341 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~----a~vv~~~~~~~~~~~~~~~  416 (467)
                            +|.++|+||.||+|+- ||+||+|.|||+.|.+||.|.++.|||++|+++|    |+|-+..+.          
T Consensus       474 ------nG~i~iVGRskdmI~r-GGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~----------  536 (596)
T KOG1177|consen  474 ------NGTIEIVGRSKDMIIR-GGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGA----------  536 (596)
T ss_pred             ------CCcEEEEEcccCeEEe-CCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccc----------
Confidence                  9999999999999985 9999999999999999999999999999998876    555554331          


Q ss_pred             cccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCcc
Q 012261          417 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  465 (467)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~  465 (467)
                         . ..++.+.++.+|+.+|..+     ..|++|.++++.|.+.+|||
T Consensus       537 ---e-~~~t~E~lKa~Ck~klaHF-----KiPky~vf~~~FPlT~tGKI  576 (596)
T KOG1177|consen  537 ---E-GKTTAETLKAMCKGKLAHF-----KIPKYFVFVDEFPLTTTGKI  576 (596)
T ss_pred             ---c-ccccHHHHHHHHhcccccc-----cCCcEEEEeccCcccccccc
Confidence               1 1268899999999998888     67799999999999999987

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-48  Score=423.63  Aligned_cols=343  Identities=23%  Similarity=0.316  Sum_probs=273.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCC---CCEEEEECChhHHHHHHHhH-HHhhcCceEEecC---
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAEN---GDKFLSMLPPWHVYERACGY-FIFSRGIELMYTA---  104 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~---~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~~---  104 (467)
                      .+++|+|||||||.||||+++|..     ......+...+   +|++++++|++|++++...+ .++..|+++++.+   
T Consensus       221 d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~  300 (624)
T PRK12582        221 TVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKP  300 (624)
T ss_pred             ceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCc
Confidence            456999999999999999999981     11122233333   58999999999999987655 4589999998843   


Q ss_pred             ----HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchh
Q 012261          105 ----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  180 (467)
Q Consensus       105 ----~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (467)
                          ...+++.+++++||++.++|+++..|.+.....    +.+                                    
T Consensus       301 ~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~----~~~------------------------------------  340 (624)
T PRK12582        301 LPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD----DAL------------------------------------  340 (624)
T ss_pred             ccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhC----HHH------------------------------------
Confidence                234677788999999999999999887643211    100                                    


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHH-----h--CCceeeccccccc
Q 012261          181 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----I--GVKVQVGYGLTES  253 (467)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~-----~--g~~v~~~YG~TE~  253 (467)
                                                     ....++++|.+++||+++++++.+++..     +  ++++++.||+||+
T Consensus       341 -------------------------------~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~  389 (624)
T PRK12582        341 -------------------------------RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET  389 (624)
T ss_pred             -------------------------------HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccc
Confidence                                           0123455699999999999999655554     2  3689999999999


Q ss_pred             cccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEE
Q 012261          254 SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  333 (467)
Q Consensus       254 ~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~  333 (467)
                      +++...........+++|.|+++++++++        +.|+.|||+++|++++.|||++|+.+...|+++|||+|||+|+
T Consensus       390 ~~~~~~~~~~~~~~~svG~p~pg~~v~i~--------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~  461 (624)
T PRK12582        390 APTTTGTHWDTERVGLIGLPLPGVELKLA--------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR  461 (624)
T ss_pred             cceeecccCCCCCCCCCCcCCCCcEEEEc--------cCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEE
Confidence            87665433334567899999999999995        3577999999999999999999999999998899999999999


Q ss_pred             E-cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHH--HHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHH
Q 012261          334 I-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE--EAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA  410 (467)
Q Consensus       334 ~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE--~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~  410 (467)
                      + +++..       +|.++|.||+||+|++++|++|+|.+||  .++.+||.|.+++|+|.+++.++++|+++.+....+
T Consensus       462 ~~d~~~~-------~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~  534 (624)
T PRK12582        462 FVDPDDP-------EKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQL  534 (624)
T ss_pred             ecCCcCC-------CCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHH
Confidence            8 43101       6899999999999998899999999885  578899999999999999999999999998876555


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCC--C-ccccEEEeCCCCCCCCCccCC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCS--F-QIGPIHVVDEPFTVNFLCLAL  467 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~-~i~~i~~~~~~~~~~~g~~~~  467 (467)
                      +...+..  ....++.+++.+++++.|+++|+.++  + +|+++.+++++|++++|++|+
T Consensus       535 ~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  592 (624)
T PRK12582        535 AGDPDAA--PEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITD  592 (624)
T ss_pred             HhcCCCC--HHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCc
Confidence            4432210  01224567899999999999998877  5 999999999999999999985

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.9e-47  Score=405.48  Aligned_cols=322  Identities=20%  Similarity=0.319  Sum_probs=264.0

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~~  105 (467)
                      -.+++|+|||||||.||+|+++|+     .......++++++|++++++|++|++++.. .+.++..|+++++.    ++
T Consensus       183 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~  262 (539)
T PRK06334        183 EDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYP  262 (539)
T ss_pred             CCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCH
Confidence            456799999999999999999998     223345577889999999999999999875 45669999998873    57


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....                                                
T Consensus       263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------  294 (539)
T PRK06334        263 KKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ------------------------------------------------  294 (539)
T ss_pred             HHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc------------------------------------------------
Confidence            89999999999999999999999887632110                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHh-CCceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAI-GVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~-g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ...++++|.+++||+++++++.+. .+.+ ++.+++.||+||++++++.....
T Consensus       295 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  347 (539)
T PRK06334        295 ---------------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVN  347 (539)
T ss_pred             ---------------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCC
Confidence                                       023456699999999999998554 4466 68999999999998766655432


Q ss_pred             C-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccc-cCCCCeeecccEEEEcCCCCCC
Q 012261          264 C-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA-LDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 ~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~-~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      . ...+++|.|+++++++++|++++.++++|+.|||+++|++++.|||++++.+... ..++|||+|||+|++++     
T Consensus       348 ~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~-----  422 (539)
T PRK06334        348 SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR-----  422 (539)
T ss_pred             CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC-----
Confidence            2 3457899999999999999888999999999999999999999999999865432 23478999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcce------EEEEeeCCCceEEEEecChHHHHHHHHHcc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ------IVVIGQDQRRPGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~------~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~  415 (467)
                           +|.+++.||.||+|+. +|++|+|.|||++|.+||+|.+      ++|+|.+++...+++++...          
T Consensus       423 -----~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------  486 (539)
T PRK06334        423 -----HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFP----------  486 (539)
T ss_pred             -----CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEecc----------
Confidence                 9999999999999997 9999999999999999999998      88999887754444443211          


Q ss_pred             ccccCcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                              .+.+++.+++++. ++.|     .+|+.|.++++.|.+.+||+.
T Consensus       487 --------~~~~~~~~~l~~~~~~~~-----~~P~~i~~v~~lP~t~~GKi~  525 (539)
T PRK06334        487 --------TSISEVNDILKNSKTSSI-----LKISYHHQVESIPMLGTGKPD  525 (539)
T ss_pred             --------CChHHHHHHHHhcCCccc-----ccchheeeecccccccCCccc
Confidence                    2345677777664 4555     578899999999999999985

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-47  Score=417.02  Aligned_cols=332  Identities=16%  Similarity=0.175  Sum_probs=266.6

Q ss_pred             CCCceEEEeeeCCCCCCcceehhhhh--H----hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecC----
Q 012261           35 DLPLFSFVLIDLNTWMPIPKMTNFQI--R----SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA----  104 (467)
Q Consensus        35 ~~~~~~i~~TSGTTG~PK~v~~t~~~--~----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~----  104 (467)
                      .-.+++|+|||||||.||||+++|..  .    .....+...++|++++..|+.|+++....+.++..|+++++++    
T Consensus       253 ~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~  332 (647)
T PTZ00237        253 SSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGII  332 (647)
T ss_pred             CCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCC
Confidence            34567999999999999999999972  1    1223356777899999999999877666677899999999853    


Q ss_pred             -----HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261          105 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  179 (467)
Q Consensus       105 -----~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (467)
                           +..+++.++++++|++.++|+++..|.+...+..    ..                                   
T Consensus       333 ~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----~~-----------------------------------  373 (647)
T PTZ00237        333 KNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT----II-----------------------------------  373 (647)
T ss_pred             CCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc----cc-----------------------------------
Confidence                 4679999999999999999999998876311000    00                                   


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeecccccccccccc
Q 012261          180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIA  258 (467)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~  258 (467)
                                                     ....+++++|.+++||+++++++.++++ .+|+++++.||+||+++..+
T Consensus       374 -------------------------------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~  422 (647)
T PTZ00237        374 -------------------------------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYL  422 (647)
T ss_pred             -------------------------------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhh
Confidence                                           0013456679999999999999966655 67999999999999986655


Q ss_pred             ccCCCC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC---CcCcccCCCccccccccCC-CCeeecccEEE
Q 012261          259 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDE-DGWLNTGDIGW  333 (467)
Q Consensus       259 ~~~~~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~---~~~~gY~~~~~~t~~~~~~-~gw~~TGD~~~  333 (467)
                      ...... ...+++|.|.++++++++| ++|++++.|+.|||++++|   +++.|||++++.+...|.. +|||+|||+|+
T Consensus       423 ~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~  501 (647)
T PTZ00237        423 YCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGF  501 (647)
T ss_pred             ccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEE
Confidence            433322 2348999999999999999 5799999999999999986   8899999999999877754 79999999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      +++          +|++++.||+||+|+. +|++|+|.|||++|.+||.|.|++|+|.+++    .+.++|+++++.   
T Consensus       502 ~d~----------dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~---  567 (647)
T PTZ00237        502 KDE----------NGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQ---  567 (647)
T ss_pred             ECC----------CCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCc---
Confidence            999          9999999999999997 8999999999999999999999999999764    577888887431   


Q ss_pred             HHHHccccccCcccCCHHHH----HHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKT----ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                .....+.+++    .++++++|.++     .+|+.|+++++.|.+.+||+.
T Consensus       568 ----------~~~~~~~~~l~~~i~~~~~~~l~~~-----~~P~~i~~v~~lP~T~sGKi~  613 (647)
T PTZ00237        568 ----------SNQSIDLNKLKNEINNIITQDIESL-----AVLRKIIIVNQLPKTKTGKIP  613 (647)
T ss_pred             ----------cccCCCHHHHHHHHHHHHHhhcCcc-----ccCcEEEEcCCCCCCCCccEe
Confidence                      1122343444    44444444444     688999999999999999973

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.7e-46  Score=412.45  Aligned_cols=325  Identities=14%  Similarity=0.122  Sum_probs=268.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~-----  103 (467)
                      -.+++|+|||||||.||||+++|+.      ......++++++|++++..|++|+++.... +.+|..|++++++     
T Consensus       275 ~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~  354 (666)
T PLN02654        275 EDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPN  354 (666)
T ss_pred             CCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCC
Confidence            4567999999999999999999971      234456789999999999999999987654 5679999999884     


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|+++..|.+...+..                                           
T Consensus       355 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------------  391 (666)
T PLN02654        355 YPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV-------------------------------------------  391 (666)
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc-------------------------------------------
Confidence              47789999999999999999999998876311000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhC---Cceeeccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIG---VKVQVGYGLTESSPVI  257 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g---~~v~~~YG~TE~~~~~  257 (467)
                                                    ...+++++|.++++|+++++++.+ +.+.+|   +++.+.||+||+++..
T Consensus       392 ------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~  441 (666)
T PLN02654        392 ------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM  441 (666)
T ss_pred             ------------------------------ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCee
Confidence                                          012445669999999999999855 455676   6899999999998766


Q ss_pred             cccCCC--CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCccccccccCC--CCeeecccE
Q 012261          258 AARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTGDI  331 (467)
Q Consensus       258 ~~~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~~--~gw~~TGD~  331 (467)
                      ....+.  ..+++++|.|.++++++|+| +.|++++.++.|||++++  |+++.|||++++.+...+..  +|||+|||+
T Consensus       442 ~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~  520 (666)
T PLN02654        442 ITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDG  520 (666)
T ss_pred             eccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCce
Confidence            554332  24678999999999999999 668899999999999999  78999999999988876543  799999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  407 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  407 (467)
                      |++++          ||+++|.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.++|+++++  
T Consensus       521 ~~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~--  587 (666)
T PLN02654        521 CSRDK----------DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEG--  587 (666)
T ss_pred             EEECC----------CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCC--
Confidence            99999          9999999999999997 8999999999999999999999999998765    46688888753  


Q ss_pred             HHHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          408 LMAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                    ...+   .+++.++++++|..+     ..|+.|+++++.|.+.+||+.
T Consensus       588 --------------~~~~~~l~~~l~~~~~~~L~~~-----~~P~~i~~v~~lP~T~sGKi~  630 (666)
T PLN02654        588 --------------VPYSEELRKSLILTVRNQIGAF-----AAPDKIHWAPGLPKTRSGKIM  630 (666)
T ss_pred             --------------CCCCHHHHHHHHHHHHHhCCCC-----cCCCEEEECCCCCCCCCcCch
Confidence                          1222   235566666666666     588999999999999999973

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-46  Score=399.19  Aligned_cols=321  Identities=22%  Similarity=0.284  Sum_probs=272.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+.+++|||||||.||+|+++|.     +......+++.++|+++..+|++|++++...+.++..|+++++.   ++..
T Consensus       207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~  286 (549)
T PRK07788        207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEA  286 (549)
T ss_pred             CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCHHH
Confidence            345699999999999999999998     23444567788999999999999999997777789999999884   7899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.+++++||++.++|+++..+.+...+..                                                 
T Consensus       287 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------------------  317 (549)
T PRK07788        287 TLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------------------------------  317 (549)
T ss_pred             HHHHHHHhCCcEEEEHHHHHHHHHhCccccc-------------------------------------------------
Confidence            9999999999999999999998876321100                                                 


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC-CC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT-CN  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~  265 (467)
                                              ....++++|.+++||+++++++.+ +.+.++..+++.||+||++........+ ..
T Consensus       318 ------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~  373 (549)
T PRK07788        318 ------------------------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAE  373 (549)
T ss_pred             ------------------------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhh
Confidence                                    002345669999999999999955 4556799999999999998655544332 23


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      .++++|.|.++++++++| +++++++.|+.|||+++|+.++.||+++++..   . .+|||+|||++++++         
T Consensus       374 ~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~---~-~~g~~~TGDl~~~~~---------  439 (549)
T PRK07788        374 APGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQ---I-IDGLLSSGDVGYFDE---------  439 (549)
T ss_pred             cCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCccc---c-cCCceecCceEEEcC---------
Confidence            568999999999999999 66889999999999999999999999987652   2 479999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       +|.+++.||+||+|+. +|++|+|.+||+.|.++|.|.+++|+|.+++    .+.++|+++++                
T Consensus       440 -~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~----------------  501 (549)
T PRK07788        440 -DGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPG----------------  501 (549)
T ss_pred             -CCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCC----------------
Confidence             9999999999999996 9999999999999999999999999998765    46788887643                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.+++.++++++|++|     +.|++|.++++.|.+.+||+.
T Consensus       502 ~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  541 (549)
T PRK07788        502 AALDEDAIKDYVRDNLARY-----KVPRDVVFLDELPRNPTGKVL  541 (549)
T ss_pred             CCCCHHHHHHHHHHhhhcC-----CCCcEEEEeCCCCCCCCcCEe
Confidence            4467789999999999988     678899999999999999984

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.5e-46  Score=396.65  Aligned_cols=326  Identities=16%  Similarity=0.074  Sum_probs=257.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~  107 (467)
                      .+++|+|||||||.||||++||..     ......++++++|++++.+|++|++++...+.++..|+++++.    ++..
T Consensus       120 d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~  199 (499)
T PLN03051        120 SVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRG  199 (499)
T ss_pred             ceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHH
Confidence            466999999999999999999982     1223446788999999999999999976666779999999874    4678


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..|.+.....      .                                           
T Consensus       200 ~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~------~-------------------------------------------  230 (499)
T PLN03051        200 FGKFVQDAGVTVLGLVPSIVKAWRHTGAFA------M-------------------------------------------  230 (499)
T ss_pred             HHHHHHHhCCcEEEeCHHHHHHHHhcCccc------c-------------------------------------------
Confidence            999999999999999999999886521000      0                                           


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHH-h--CCceeecccccccccccccc-CCC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-I--GVKVQVGYGLTESSPVIAAR-RPT  263 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~-~--g~~v~~~YG~TE~~~~~~~~-~~~  263 (467)
                                              -..+++++|.+++||+++++++.++++. .  +..+++.||+||+++..... ...
T Consensus       231 ------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  286 (499)
T PLN03051        231 ------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ  286 (499)
T ss_pred             ------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC
Confidence                                    0023445699999999999988666554 3  47899999999987543332 222


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCC--CceEEEEeCCCc--CcccCCCccccccccCCCC----------eeecc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQV--MQGYFKNPSATKQALDEDG----------WLNTG  329 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g--~~GEL~v~~~~~--~~gY~~~~~~t~~~~~~~g----------w~~TG  329 (467)
                      ....+++|.|.++++++|+| +++++++.|  +.|||+++|+.+  +.|||+++ .+. .+. +|          ||+||
T Consensus       287 ~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~-~g~~~~~~~~~~~~~TG  362 (499)
T PLN03051        287 PQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYY-KGMPMYGSKGMPLRRHG  362 (499)
T ss_pred             CCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccc-eee-ecCCccccCCcceeecC
Confidence            33568999999999999999 678899988  479999999976  58999765 333 332 33          78999


Q ss_pred             cEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHc-CcCcceEEEEeeCCC-----ceEEEE---
Q 012261          330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQR-----RPGAII---  400 (467)
Q Consensus       330 D~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~-~p~V~~~~Vvg~~~~-----~~~a~v---  400 (467)
                      |+|++|+          ||+++|.||+||+||. +|++|+|.|||++|.+ ||.|.+++|+|.+++     .+.|+|   
T Consensus       363 Dlg~~d~----------dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~  431 (499)
T PLN03051        363 DIMKRTP----------GGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG  431 (499)
T ss_pred             CeEEECC----------CCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence            9999999          9999999999999996 9999999999999986 999999999998764     355666   


Q ss_pred             ecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          401 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       401 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      +++++.               ...+.++++++|++.+++...+. .++..|.++++.|.+.+||+.
T Consensus       432 v~~~~~---------------~~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~v~~lP~t~~GKi~  481 (499)
T PLN03051        432 EEKKGF---------------DQARPEALQKKFQEAIQTNLNPL-FKVSRVKIVPELPRNASNKLL  481 (499)
T ss_pred             eecccc---------------cccchHHHHHHHHHHHHhhcCCc-cCCceEEEcCCCCCCCCccHH
Confidence            554321               13566788888888877654333 367789999999999999974

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.8e-46  Score=405.52  Aligned_cols=322  Identities=24%  Similarity=0.356  Sum_probs=269.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEecC-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTA-----  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~~-----  104 (467)
                      -.+++|+|||||||.||+|+++|+     .......+++.++|++++.+|++|+++.... +.++..|+++++.+     
T Consensus       213 d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~  292 (632)
T PRK07529        213 DDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYR  292 (632)
T ss_pred             CceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccC
Confidence            345699999999999999999997     2233345677899999999999999998755 55699999999853     


Q ss_pred             ----HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchh
Q 012261          105 ----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  180 (467)
Q Consensus       105 ----~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (467)
                          ...+++.++++++|++.++|+++..+.+....                                            
T Consensus       293 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------------------------------  328 (632)
T PRK07529        293 GPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD--------------------------------------------  328 (632)
T ss_pred             cchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc--------------------------------------------
Confidence                25788999999999999999999988752100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccc
Q 012261          181 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~  259 (467)
                                                      ..+++++|.+++||+++++++.+. .+.+|+++++.||+||+++....
T Consensus       329 --------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~  376 (632)
T PRK07529        329 --------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSV  376 (632)
T ss_pred             --------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCccccc
Confidence                                            024556799999999999999554 45679999999999999877766


Q ss_pred             cCCCC-CCCCcccccCCCeEEEEEeC-CCC---cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEE
Q 012261          260 RRPTC-NVLGSVGHPINHTEIKIVDA-ETN---EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  334 (467)
Q Consensus       260 ~~~~~-~~~g~vG~p~~~~~v~i~d~-~~~---~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~  334 (467)
                      ++... ...+++|.|+|+++++++.. +++   ++++.|+.|||+++|++++.||++++ .+...+..+|||+|||+|++
T Consensus       377 ~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~  455 (632)
T PRK07529        377 NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRI  455 (632)
T ss_pred             CCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEE
Confidence            65443 36789999999999999642 345   78999999999999999999999865 45566667899999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  410 (467)
                      ++          ||.+++.||+||+|+. +|++|+|.+||+.|.+||+|.+++|+|.+++    .++++|++.++     
T Consensus       456 d~----------dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~-----  519 (632)
T PRK07529        456 DA----------DGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPG-----  519 (632)
T ss_pred             cC----------CceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCC-----
Confidence            99          9999999999999996 9999999999999999999999999998765    46678887643     


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHH-HhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ...+.+++.+++++++.+ +     ..|+.|.++++.|.+.+||+.
T Consensus       520 -----------~~~~~~~l~~~~~~~l~~~~-----~~P~~i~~v~~lP~t~~GKi~  560 (632)
T PRK07529        520 -----------ASATEAELLAFARDHIAERA-----AVPKHVRILDALPKTAVGKIF  560 (632)
T ss_pred             -----------CCCCHHHHHHHHHHhcchhc-----cCCcEEEEecCCCCCCCCccc
Confidence                       446678899999998864 4     578999999999999999984

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.1e-45  Score=403.27  Aligned_cols=327  Identities=13%  Similarity=0.132  Sum_probs=267.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~------  103 (467)
                      .+++|+|||||||.||||+++|..      ......++++++|++++..|++|+++... .+.+|..|+++++.      
T Consensus       237 ~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~  316 (625)
T TIGR02188       237 DPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTY  316 (625)
T ss_pred             CceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCC
Confidence            467999999999999999999971      12334568899999999999999988654 56679999999874      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..|.+...+..                                            
T Consensus       317 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------------  352 (625)
T TIGR02188       317 PDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV--------------------------------------------  352 (625)
T ss_pred             CChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--------------------------------------------
Confidence             47889999999999999999999998876311100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC---Cceeecccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG---VKVQVGYGLTESSPVIA  258 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g---~~v~~~YG~TE~~~~~~  258 (467)
                                                   ...+++++|.+++||+++++++.+++. .++   +++++.||+||+++..+
T Consensus       353 -----------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~  403 (625)
T TIGR02188       353 -----------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMI  403 (625)
T ss_pred             -----------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCcee
Confidence                                         003456679999999999999965554 554   78999999999987755


Q ss_pred             ccCCC--CCCCCcccccCCCeEEEEEeCCCCcccC-CCCceEEEEeC--CCcCcccCCCccccccccC--CCCeeecccE
Q 012261          259 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDI  331 (467)
Q Consensus       259 ~~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~-~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~--~~gw~~TGD~  331 (467)
                      ...+.  ..+++++|.|+++++++++| +++++++ +|+.|||++++  |+++.|||++++.+...+.  .+|||+|||+
T Consensus       404 ~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl  482 (625)
T TIGR02188       404 TPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDG  482 (625)
T ss_pred             ecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCce
Confidence            44332  34678999999999999999 7789999 99999999999  6899999999988877664  3789999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  407 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  407 (467)
                      |++++          +|.+++.||+||+|++ +|++|+|.|||++|.+||.|.|++|+|.+++    .+.++|+++++. 
T Consensus       483 ~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~-  550 (625)
T TIGR02188       483 ARRDK----------DGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY-  550 (625)
T ss_pred             EEEcC----------CCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC-
Confidence            99999          9999999999999997 8999999999999999999999999998764    567888887541 


Q ss_pred             HHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          408 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ...+...++++++++++|..+     .+|+.|+++++.|.+.+||+.
T Consensus       551 ------------~~~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~lP~t~sGKi~  592 (625)
T TIGR02188       551 ------------EPDDELRKELRKHVRKEIGPI-----AKPDKIRFVPGLPKTRSGKIM  592 (625)
T ss_pred             ------------CCCHHHHHHHHHHHHhhcCCC-----ccCcEEEECCCCCCCCCccch
Confidence                        000011245666666666665     588999999999999999974

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.7e-45  Score=395.06  Aligned_cols=324  Identities=23%  Similarity=0.315  Sum_probs=269.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-----hhh----cccCC-CCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec--
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-----SLY----DIVPA-ENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-----~~~----~~~~~-~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~--  103 (467)
                      .+++|+|||||||.||+|+++|+..     .+.    ..+.. ...++++..+|++|++++...+ .++..|+++++.  
T Consensus       199 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  278 (560)
T PLN02574        199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR  278 (560)
T ss_pred             CEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC
Confidence            3569999999999999999999821     111    11222 3568899999999999987654 457889998874  


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..+.+.....                             .               
T Consensus       279 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------~---------------  314 (560)
T PLN02574        279 FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV-----------------------------C---------------  314 (560)
T ss_pred             CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-----------------------------c---------------
Confidence             6889999999999999999999999887631100                             0               


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeecccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                    ...+..+|.+++||+++++++ .++.+.+ ++++++.||+||+++..+..
T Consensus       315 ------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  364 (560)
T PLN02574        315 ------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG  364 (560)
T ss_pred             ------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecC
Confidence                                          023455699999999999998 5556677 78999999999998655432


Q ss_pred             CC--CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261          261 RP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  338 (467)
Q Consensus       261 ~~--~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~  338 (467)
                      ..  .....+++|.|.++++++|+|++++++++.|+.|||+++|++++.|||++++.+.+.|..+|||+|||+|++++  
T Consensus       365 ~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~--  442 (560)
T PLN02574        365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDE--  442 (560)
T ss_pred             CCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEEC--
Confidence            21  22456899999999999999988999999999999999999999999999999999888899999999999999  


Q ss_pred             CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHc
Q 012261          339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRL  414 (467)
Q Consensus       339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~  414 (467)
                              +|.+++.||+||+|++ +|++|+|.|||++|.+||.|.|++|+|.+++.    +.++|+.+++         
T Consensus       443 --------~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~---------  504 (560)
T PLN02574        443 --------DGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQG---------  504 (560)
T ss_pred             --------CCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCC---------
Confidence                    9999999999999997 89999999999999999999999999987653    5577776543         


Q ss_pred             cccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          415 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                             ...+.+++.+++++++..+     ..++.|.++++.+.+.+||+.
T Consensus       505 -------~~~~~~~l~~~~~~~l~~~-----~~p~~v~~v~~iP~t~~GKi~  544 (560)
T PLN02574        505 -------STLSQEAVINYVAKQVAPY-----KKVRKVVFVQSIPKSPAGKIL  544 (560)
T ss_pred             -------CCCCHHHHHHHHHHhccCc-----ccCcEEEEeeccCCCCcchhh
Confidence                   3456678999999998888     577899999999999999974

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.1e-45  Score=392.58  Aligned_cols=334  Identities=23%  Similarity=0.238  Sum_probs=265.0

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+++|+|||||||.||+|+++|..     ......++++++|+++.++|++|++++...+.++..|+++++.   ++..
T Consensus       172 ~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~  251 (563)
T PLN02860        172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKA  251 (563)
T ss_pred             CCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCCHHH
Confidence            3556999999999999999999972     2233457888999999999999999987777789999999884   6889


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..|.+.....                                                  
T Consensus       252 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------------------------------  281 (563)
T PLN02860        252 ALQAIKQHNVTSMITVPAMMADLISLTRKS--------------------------------------------------  281 (563)
T ss_pred             HHHHHHHhCCeeEEeChHHHHHHHHhhhhh--------------------------------------------------
Confidence            999999999999999999999887632110                                                  


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh-CCceeeccccccccccccccCCCC-
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLTESSPVIAARRPTC-  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-  264 (467)
                                             .....+..+|.+++||+++++++.+ +.+.+ +.++++.||+||+++......... 
T Consensus       282 -----------------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  338 (563)
T PLN02860        282 -----------------------MTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDP  338 (563)
T ss_pred             -----------------------hccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCccccccccccc
Confidence                                   0012345669999999999999954 44566 789999999999986544322111 


Q ss_pred             ----------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC
Q 012261          265 ----------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE  322 (467)
Q Consensus       265 ----------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~  322 (467)
                                            ....++|.|++++++++++++      +|+.|||+++|++++.|||++|+.+...+..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~  412 (563)
T PLN02860        339 TLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSN  412 (563)
T ss_pred             ccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccC
Confidence                                  112378999999999999844      5789999999999999999999999999888


Q ss_pred             CCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEE
Q 012261          323 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  398 (467)
Q Consensus       323 ~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a  398 (467)
                      +|||+|||+|++++          +|.+++.||+||+|+. +|++|+|.|||+++.+||+|.+++|+|.+++    .+.+
T Consensus       413 ~g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a  481 (563)
T PLN02860        413 DGWLDTGDIGWIDK----------AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVA  481 (563)
T ss_pred             CCeEEccceEEEcC----------CCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEE
Confidence            99999999999999          9999999999999997 9999999999999999999999999998764    4678


Q ss_pred             EEecChHHHHHHHHHccccccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEe-CCCCCCCCCccC
Q 012261          399 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVV-DEPFTVNFLCLA  466 (467)
Q Consensus       399 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~-~~~~~~~~g~~~  466 (467)
                      +|+++++..  +..............+.+.+.+++++ .|+.|     +.|+.|.++ ++.|.+.+||+.
T Consensus       482 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-----~~P~~~~~~~~~lP~t~~GKi~  544 (563)
T PLN02860        482 CVRLRDGWI--WSDNEKENAKKNLTLSSETLRHHCREKNLSRF-----KIPKLFVQWRKPFPLTTTGKIR  544 (563)
T ss_pred             EEEECCccc--cccccchhhcccccccHHHHHHHHhhCccccc-----ccceEEEEEecCCCCCcccchh
Confidence            888765420  00000000001123556778888876 47777     678888765 668999999974

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.6e-45  Score=400.61  Aligned_cols=334  Identities=15%  Similarity=0.109  Sum_probs=266.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----  103 (467)
                      -.+++|+|||||||.||||+++|..      ......++++++|++++..|++|+++... .+.+|..|+++++.     
T Consensus       232 ~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~  311 (628)
T TIGR02316       232 NEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPT  311 (628)
T ss_pred             CCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCC
Confidence            4567999999999999999999972      23344578899999999999999998754 56679999999884     


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|+++..|.+.....      +                                     
T Consensus       312 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~-------------------------------------  348 (628)
T TIGR02316       312 NPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW------L-------------------------------------  348 (628)
T ss_pred             CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc------c-------------------------------------
Confidence              4678999999999999999999998776521000      0                                     


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeecccccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                    ...+++++|.+++||+++++++.+++. .++..+++.||+||++...+..
T Consensus       349 ------------------------------~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~  398 (628)
T TIGR02316       349 ------------------------------RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAI  398 (628)
T ss_pred             ------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecC
Confidence                                          013456779999999999999966554 6799999999999998544333


Q ss_pred             CCC----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC---CcCcccCCCccccccccC---CCCeeeccc
Q 012261          261 RPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALD---EDGWLNTGD  330 (467)
Q Consensus       261 ~~~----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~---~~~~gY~~~~~~t~~~~~---~~gw~~TGD  330 (467)
                      ...    ....+++|.|+++++++++|++++++++.|+.|||+++||   +++.|||++++.+.+.+.   .++||+|||
T Consensus       399 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  478 (628)
T TIGR02316       399 MPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD  478 (628)
T ss_pred             CCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCc
Confidence            221    2356899999999999999977899999999999999998   578999999987776542   477999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHH
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  406 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  406 (467)
                      +|++++          ||++++.||.||+||+ +|++|+|.|||++|.+||+|.|++|+|.+++    .+.++|+++++.
T Consensus       479 ~g~~d~----------dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~  547 (628)
T TIGR02316       479 WGIRDE----------DGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESD  547 (628)
T ss_pred             eEEEcC----------CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCc
Confidence            999999          9999999999999997 9999999999999999999999999998765    456777776431


Q ss_pred             HHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          407 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ..        ..........++++++++++|..|     ..|+.|+++++.|.+.|||+.
T Consensus       548 ~~--------~~~~~~~~~~~~i~~~~~~~L~~~-----~~P~~v~~v~~lP~t~sGKi~  594 (628)
T TIGR02316       548 SA--------GDAHDPHAVETGMMDCVVRQLGAV-----ARPARVYFVAALPKTRSGKLL  594 (628)
T ss_pred             cc--------ccccchHHHHHHHHHHHHHhcCCC-----cCCCEEEEcCCCCCCCchHHH
Confidence            00        000000112345666777666666     588999999999999999973

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-45  Score=384.00  Aligned_cols=322  Identities=21%  Similarity=0.316  Sum_probs=272.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|.++|.     .......++++++|+++..+|++|.+++... +.++..|+++++.   ++.
T Consensus       149 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  228 (496)
T PRK06839        149 SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPT  228 (496)
T ss_pred             CCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHH
Confidence            346799999999999999999997     2233345678899999999999999998765 4568999998884   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|++++.+.+.....                                                 
T Consensus       229 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  259 (496)
T PRK06839        229 KALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------------------------------  259 (496)
T ss_pred             HHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------------------------------
Confidence            9999999999999999999999987631100                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--C
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--C  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~  264 (467)
                                                ..++..+|.+++||+++++++.+.++..|.++.+.||+||++...+.....  .
T Consensus       260 --------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  313 (496)
T PRK06839        260 --------------------------TTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDAR  313 (496)
T ss_pred             --------------------------cCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEeccccccc
Confidence                                      023445699999999999999666666699999999999998755444322  2


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|+++++++++|++ +..++.|+.|||+++|++++.||+++++.+...+ .+|||+|||++++++        
T Consensus       314 ~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~--------  383 (496)
T PRK06839        314 RKVGSIGKPVLFCDYELIDEN-KNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE--------  383 (496)
T ss_pred             ccCCCCcccCCCceEEEECCC-cCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcC--------
Confidence            457899999999999999954 5669999999999999999999999999988877 589999999999998        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.+|+|+. +|++|+|.+||+.|.++|+|.+++|+|.+++.    +.++|+++++               
T Consensus       384 --~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---------------  445 (496)
T PRK06839        384 --DGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS---------------  445 (496)
T ss_pred             --CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC---------------
Confidence              8999999999999995 99999999999999999999999999987654    6688887643               


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+.+++++++++.|+.+     ++|..|+++++.|.+.+||+.
T Consensus       446 -~~~~~~~l~~~~~~~l~~~-----~~P~~~~~v~~~P~t~~GKi~  485 (496)
T PRK06839        446 -SVLIEKDVIEHCRLFLAKY-----KIPKEIVFLKELPKNATGKIQ  485 (496)
T ss_pred             -CCCCHHHHHHHHHhhCcCC-----CCCcEEEEeccCCCCcccccc
Confidence             3456678999999888887     688999999999999999984

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-45  Score=397.44  Aligned_cols=324  Identities=14%  Similarity=0.127  Sum_probs=265.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~------  103 (467)
                      .+++|+|||||||.||+|+++|..      ......++++++|++++.+|++|+++... .+.+|..|+++++.      
T Consensus       246 d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  325 (637)
T PRK00174        246 DPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY  325 (637)
T ss_pred             CcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCC
Confidence            466999999999999999999972      12334568889999999999999998764 45669999998874      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..|.+......                                            
T Consensus       326 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------------  361 (637)
T PRK00174        326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP--------------------------------------------  361 (637)
T ss_pred             CChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc--------------------------------------------
Confidence             47889999999999999999999998876311100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC---Cceeecccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG---VKVQVGYGLTESSPVIA  258 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g---~~v~~~YG~TE~~~~~~  258 (467)
                                                   ...+++++|.+++||+++++++.+++. .++   +++++.||+||+++...
T Consensus       362 -----------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  412 (637)
T PRK00174        362 -----------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI  412 (637)
T ss_pred             -----------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence                                         002455679999999999999865554 555   78999999999987655


Q ss_pred             ccCCC--CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCccccccccC--CCCeeecccEE
Q 012261          259 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIG  332 (467)
Q Consensus       259 ~~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~--~~gw~~TGD~~  332 (467)
                      ...+.  ..+++++|.|+++++++++| +.+++++.|+.|||+++|  |+++.|||++++.+...+.  .+|||+|||+|
T Consensus       413 ~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~  491 (637)
T PRK00174        413 TPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGA  491 (637)
T ss_pred             ecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceE
Confidence            43332  23568999999999999999 668999999999999999  6999999999988877652  37899999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.++|+++++   
T Consensus       492 ~~d~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~---  557 (637)
T PRK00174        492 RRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGG---  557 (637)
T ss_pred             EEcC----------CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCC---
Confidence            9998          9999999999999997 8999999999999999999999999998664    47788888653   


Q ss_pred             HHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+   .+++.++++++|..+     ..|+.|.++++.|.+.+||+.
T Consensus       558 -------------~~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  600 (637)
T PRK00174        558 -------------EEPSDELRKELRNWVRKEIGPI-----AKPDVIQFAPGLPKTRSGKIM  600 (637)
T ss_pred             -------------CCCCHHHHHHHHHHHHhhcCCc-----cCCCEEEEcCCCCCCCCcchH
Confidence                         1112   345666666666666     588999999999999999974

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-44  Score=385.43  Aligned_cols=325  Identities=22%  Similarity=0.287  Sum_probs=275.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~---~~~~  107 (467)
                      .++.|+|||||||.||+|+++|+     +......++++++|++++.+|++|++++...+ .++..|+++++.   ++..
T Consensus       191 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~  270 (546)
T PRK08314        191 DLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREA  270 (546)
T ss_pred             CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHH
Confidence            46699999999999999999998     23344456788999999999999999987654 569999999995   5788


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|.++..+.+....                              .                    
T Consensus       271 ~~~~i~~~~~t~~~~~p~~~~~ll~~~~~------------------------------~--------------------  300 (546)
T PRK08314        271 AARLIERYRVTHWTNIPTMVVDFLASPGL------------------------------A--------------------  300 (546)
T ss_pred             HHHHHHHhcCceecccHHHHHHHHhCCCc------------------------------c--------------------
Confidence            99999999999999999999877652000                              0                    


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCCCC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTCNV  266 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~  266 (467)
                                               ...++.+|.+++||+++++++. ++.+.++.++++.||+||++............
T Consensus       301 -------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  355 (546)
T PRK08314        301 -------------------------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPK  355 (546)
T ss_pred             -------------------------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCC
Confidence                                     0223345999999999999985 45556799999999999998776665554455


Q ss_pred             CCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC---CCeeecccEEEEcCCCCCCCc
Q 012261          267 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~---~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      .+++|.|.++++++++|++++.+++.|+.|||+++|++++.||+++++.+...|..   ++||+|||+|++++       
T Consensus       356 ~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~-------  428 (546)
T PRK08314        356 LQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE-------  428 (546)
T ss_pred             CCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC-------
Confidence            68999999999999999888999999999999999999999999999998887732   45999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||+||+|++ +|++|+|.|||++|.++|+|.+++|++.+++    .+.++++++++.             
T Consensus       429 ---~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~-------------  491 (546)
T PRK08314        429 ---EGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA-------------  491 (546)
T ss_pred             ---CCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCC-------------
Confidence               8999999999999997 8999999999999999999999999998664    467888887541             


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ....+.++++++++++++.+     ..|+.|+++++.|.+.+||+.
T Consensus       492 -~~~~~~~~l~~~~~~~l~~~-----~~P~~~~~v~~iP~t~~GKv~  532 (546)
T PRK08314        492 -RGKTTEEEIIAWAREHMAAY-----KYPRIVEFVDSLPKSGSGKIL  532 (546)
T ss_pred             -CCCCCHHHHHHHHHHhcccC-----CCCcEEEEecCCCCCCcccee
Confidence             02345688999999999888     688999999999999999985

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.9e-44  Score=383.38  Aligned_cols=320  Identities=21%  Similarity=0.319  Sum_probs=268.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~~  107 (467)
                      .+++|+|||||||.||+|+++|.     +......++++++|++++++|++|++++... +.++..|+++++.   ++..
T Consensus       198 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~  277 (547)
T PRK13295        198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPAR  277 (547)
T ss_pred             ceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHH
Confidence            45699999999999999999997     2334455788899999999999999987654 5569999999885   6889


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|.++..+.......                                                  
T Consensus       278 ~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~--------------------------------------------------  307 (547)
T PRK13295        278 AAELIRTEGVTFTMASTPFLTDLTRAVKES--------------------------------------------------  307 (547)
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhccccc--------------------------------------------------
Confidence            999999999999999999998887632110                                                  


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC--C
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT--C  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~  264 (467)
                                               ...++++|.+++||+++++++.+ +.+.+++++++.||+||++...+.+...  .
T Consensus       308 -------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  362 (547)
T PRK13295        308 -------------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDE  362 (547)
T ss_pred             -------------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcch
Confidence                                     02345569999999999999955 4556799999999999998766554432  2


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|+++++++++| +++++++.|+.|||+++|++++.||+++++.+...  .+|||+|||+|++++        
T Consensus       363 ~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~--------  431 (547)
T PRK13295        363 RASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDA--------  431 (547)
T ss_pred             hccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcC--------
Confidence            2357889999999999999 56889999999999999999999999999988766  588999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.||+|++ +|++|+|.+||+.|.++|+|.+++|+|.+++    .+.++|+++++               
T Consensus       432 --~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---------------  493 (547)
T PRK13295        432 --DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG---------------  493 (547)
T ss_pred             --CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC---------------
Confidence              8999999999999996 9999999999999999999999999997654    56677877643               


Q ss_pred             cccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+.+++.+++++ .++.+     .+|++|.++++.|.+.+||+.
T Consensus       494 -~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~lP~t~sgK~~  534 (547)
T PRK13295        494 -QSLDFEEMVEFLKAQKVAKQ-----YIPERLVVRDALPRTPSGKIQ  534 (547)
T ss_pred             -CCCCHHHHHHHHHhccCccc-----cCCcEEEEeccCCCCCCcccc
Confidence             23455678888875 56666     688899999999999999974

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-44  Score=390.06  Aligned_cols=326  Identities=18%  Similarity=0.225  Sum_probs=267.4

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~~~  106 (467)
                      .++.|+|||||||.||+|+++|+     .......++++++|++++..|+.|+++... .+.++..|+++++.    ++.
T Consensus       206 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~  285 (570)
T PRK04319        206 DGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPE  285 (570)
T ss_pred             CCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHH
Confidence            46799999999999999999998     223345577889999999999999998765 45679999998874    588


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|++++.+.+...+..                                                
T Consensus       286 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  317 (570)
T PRK04319        286 RWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV------------------------------------------------  317 (570)
T ss_pred             HHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc------------------------------------------------
Confidence            99999999999999999999998865211000                                                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCC-C
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPT-C  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~-~  264 (467)
                                               ...+++++|.+++||+++++++.++++ .+|.++++.||+||+++........ .
T Consensus       318 -------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~  372 (570)
T PRK04319        318 -------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMD  372 (570)
T ss_pred             -------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCC
Confidence                                     002345679999999999999965555 6799999999999998765543332 3


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      ..++++|.|.|+++++++| +++.+++.|+.|||++++  ++++.|||++++.+...|. +|||+|||++++++      
T Consensus       373 ~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~------  444 (570)
T PRK04319        373 IKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDE------  444 (570)
T ss_pred             CCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECC------
Confidence            4678999999999999999 567788999999999997  8999999999999998885 89999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|.+++.||+||+|+. +|++|+|.+||+.|.++|.|.+++|+|.+++.    +.++|++.++.            
T Consensus       445 ----~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~------------  507 (570)
T PRK04319        445 ----DGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY------------  507 (570)
T ss_pred             ----CeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC------------
Confidence                9999999999999997 89999999999999999999999999987653    55667765431            


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+...+++.++++++|+.|     .+|+.|.++++.|.+.+||+.
T Consensus       508 -~~~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~iP~t~~GKv~  549 (570)
T PRK04319        508 -EPSEELKEEIRGFVKKGLGAH-----AAPREIEFKDKLPKTRSGKIM  549 (570)
T ss_pred             -CCCHHHHHHHHHHHHHhcccc-----cCCcEEEEeCCCCCCCchhhh
Confidence             000111246667777777666     588999999999999999974

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.5e-44  Score=384.40  Aligned_cols=319  Identities=18%  Similarity=0.249  Sum_probs=258.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEe---------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---------  102 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~---------  102 (467)
                      .+++|+|||||||.||+|+++|+     +......+++.++|+.++.+|++|++++       ..|+++++         
T Consensus       175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~  247 (552)
T PRK09274        175 DMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP-------ALGMTSVIPDMDPTRPA  247 (552)
T ss_pred             CeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-------hhCCeEEecCccccccc
Confidence            45699999999999999999997     2344456788999999999999987654       34555554         


Q ss_pred             -cCHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          103 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       103 -~~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                       .++..+++.++++++|++.++|+++..+.+.....                                            
T Consensus       248 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------------------------  283 (552)
T PRK09274        248 TVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN--------------------------------------------  283 (552)
T ss_pred             ccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------------------------------------
Confidence             25789999999999999999999999997732211                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHh--CCceeecccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAI--GVKVQVGYGLTESSPVIA  258 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~--g~~v~~~YG~TE~~~~~~  258 (467)
                                                     ..+++++|.+++||+++++++.+. .+.+  |+++++.||+||++++..
T Consensus       284 -------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  332 (552)
T PRK09274        284 -------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS  332 (552)
T ss_pred             -------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence                                           024455699999999999999554 4566  579999999999987654


Q ss_pred             ccCCC----------CCCCCcccccCCCeEEEEEeCC--------CCcccCCCCceEEEEeCCCcCcccCCCcccccccc
Q 012261          259 ARRPT----------CNVLGSVGHPINHTEIKIVDAE--------TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL  320 (467)
Q Consensus       259 ~~~~~----------~~~~g~vG~p~~~~~v~i~d~~--------~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~  320 (467)
                      .....          .....++|.|+++++++++|++        ++++++.|+.|||+++|++++.|||++++.+...+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~  412 (552)
T PRK09274        333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAK  412 (552)
T ss_pred             ecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhh
Confidence            43211          1123478999999999999853        46789999999999999999999999999988775


Q ss_pred             --CCCC--eeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC--
Q 012261          321 --DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR--  394 (467)
Q Consensus       321 --~~~g--w~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~--  394 (467)
                        +.+|  ||+|||+|++++          +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++  
T Consensus       413 ~~~~~g~~w~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~  481 (552)
T PRK09274        413 IPDGQGDVWHRMGDLGYLDA----------QGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGA  481 (552)
T ss_pred             cccCCCCcEEEcCCEEEEcc----------CCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCC
Confidence              3466  999999999999          9999999999999997 8999999999999999999999999998664  


Q ss_pred             -ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCC--CCCccC
Q 012261          395 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV--NFLCLA  466 (467)
Q Consensus       395 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~--~~g~~~  466 (467)
                       .+.++|+++++                ...+.+++.+.+++.++.+...  ..|++|.++++.|.+  .|||+.
T Consensus       482 ~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~~lP~t~~~~GKi~  538 (552)
T PRK09274        482 QRPVLCVELEPG----------------VACSKSALYQELRALAAAHPHT--AGIERFLIHPSFPVDIRHNAKIF  538 (552)
T ss_pred             ceEEEEEEccCc----------------cccchHHHhhhhHHHHHhcCCC--cceeEEeccCCCCcccccccccc
Confidence             35677777643                3345566888888888777322  577899999999987  799985

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.2e-44  Score=383.21  Aligned_cols=320  Identities=20%  Similarity=0.278  Sum_probs=266.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .+.+++|||||||.||+|+++|.     .......+.+.++|+++..+|++|++++...+.++..|+++++.   ++..+
T Consensus       197 ~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~  276 (537)
T PRK13382        197 KGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEAT  276 (537)
T ss_pred             CCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHH
Confidence            45689999999999999999995     23344456778899999999999999987777779999998884   78999


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+.......                                                 
T Consensus       277 ~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------------------------------  307 (537)
T PRK13382        277 LDLIDRHRATGLAVVPVMFDRIMDLPAEVRN-------------------------------------------------  307 (537)
T ss_pred             HHHHHHhCCEEEEehHHHHHHHHcCCchhcc-------------------------------------------------
Confidence            9999999999999999999988762111000                                                 


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCCC-CCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNV  266 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~  266 (467)
                                              ..++.++|.+++||+++++++ .++.+.++.++++.||+||++.++..+... ...
T Consensus       308 ------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  363 (537)
T PRK13382        308 ------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAA  363 (537)
T ss_pred             ------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccC
Confidence                                    012335699999999999998 455557798999999999998766654322 235


Q ss_pred             CCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcccc
Q 012261          267 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC  346 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~  346 (467)
                      ++++|.|.++++++++| +.+++++.|+.|||+++|++++.||+  ++.+.. + .+|||+|||++++++          
T Consensus       364 ~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~----------  428 (537)
T PRK13382        364 PDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDE----------  428 (537)
T ss_pred             CCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeC----------
Confidence            68999999999999999 46889999999999999999999998  444543 3 379999999999999          


Q ss_pred             CceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCcc
Q 012261          347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADAS  422 (467)
Q Consensus       347 ~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~  422 (467)
                      +|.+++.||+||+|+. +|++|+|.+||+.|.++|+|.+++|+|.++..    +.++|+++++                .
T Consensus       429 ~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~----------------~  491 (537)
T PRK13382        429 NGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG----------------A  491 (537)
T ss_pred             CCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCC----------------C
Confidence            9999999999999996 99999999999999999999999999987653    6677887643                3


Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          423 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       423 ~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ..+.+++.++++++|+.+     ..|+.|.++++.+.+.+||+.
T Consensus       492 ~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~gK~~  530 (537)
T PRK13382        492 SATPETLKQHVRDNLANY-----KVPRDIVVLDELPRGATGKIL  530 (537)
T ss_pred             CCCHHHHHHHHHHhccCC-----CCCcEEEEeccCCCCCCCCCc
Confidence            356778999999999888     688899999999999999974

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.4e-44  Score=382.71  Aligned_cols=323  Identities=24%  Similarity=0.360  Sum_probs=271.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----Hhh----hcccCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec---
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSL----YDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~----~~~~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~---  103 (467)
                      .+++++|||||||.||+|+++|+.     ...    ...++++++|+++..+|++|++++...+ .++..|+++++.   
T Consensus       180 ~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~  259 (537)
T PLN02246        180 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKF  259 (537)
T ss_pred             CEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence            456999999999999999999971     111    1246788999999999999999986654 559999999995   


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|++.++|+++..|.+.....                                              
T Consensus       260 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------------------  293 (537)
T PLN02246        260 EIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE----------------------------------------------  293 (537)
T ss_pred             CHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc----------------------------------------------
Confidence            5788999999999999999999998876521100                                              


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-Hh-CCceeeccccccccccccccC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AI-GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~-g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                   ...+..+|.+++||+++++++.+.+. .+ +..+++.||+||++.+++.+.
T Consensus       294 -----------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  344 (537)
T PLN02246        294 -----------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCL  344 (537)
T ss_pred             -----------------------------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCccccccc
Confidence                                         02234569999999999999855554 56 778999999999987654432


Q ss_pred             C-----CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcC
Q 012261          262 P-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  336 (467)
Q Consensus       262 ~-----~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~  336 (467)
                      .     ....++++|.|.++++++++|++++++++.|+.|||+++|+.++.||+++++.+...++.+|||+|||+|++++
T Consensus       345 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~  424 (537)
T PLN02246        345 AFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDD  424 (537)
T ss_pred             ccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeC
Confidence            1     12356789999999999999988899999999999999999999999999999999988899999999999999


Q ss_pred             CCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHH
Q 012261          337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  412 (467)
Q Consensus       337 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  412 (467)
                                +|.+++.||.||+|+. +|++|+|.+||+.|.++|+|.+++|++.+++    .++++++++++       
T Consensus       425 ----------~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  486 (537)
T PLN02246        425 ----------DDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG-------  486 (537)
T ss_pred             ----------CCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC-------
Confidence                      9999999999999997 8999999999999999999999999997654    45677776533       


Q ss_pred             HccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          413 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                               ...+.+++.+++++++..+     ..|++|.++++.|.+.+||+.
T Consensus       487 ---------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~~~~~P~t~~GKi~  526 (537)
T PLN02246        487 ---------SEITEDEIKQFVAKQVVFY-----KRIHKVFFVDSIPKAPSGKIL  526 (537)
T ss_pred             ---------CCCCHHHHHHHHHhhCcCc-----cccceEEEeccCCCCCcchhh
Confidence                     3456778999998888887     688899999999999999974

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-43  Score=381.35  Aligned_cols=322  Identities=25%  Similarity=0.374  Sum_probs=266.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----Hhhhccc--CCCC-CCEEEEECChhHHHHHHHhH-HHhhcCceEEec----
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIV--PAEN-GDKFLSMLPPWHVYERACGY-FIFSRGIELMYT----  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~--~~~~-~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~----  103 (467)
                      .++.|+|||||||.||+|+++|..     ......+  .... .+.+++.+|++|.+++...+ ..+..|+..++.    
T Consensus       208 d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~  287 (562)
T PRK05677        208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPR  287 (562)
T ss_pred             CEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcc
Confidence            456999999999999999999972     1111122  2333 36889999999999986544 447778776653    


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|.+.++|+.+..+.+.....                                              
T Consensus       288 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------------------  321 (562)
T PRK05677        288 DLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR----------------------------------------------  321 (562)
T ss_pred             cHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc----------------------------------------------
Confidence            5678999999999999999999998876521000                                              


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccccccccCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   ...+.++|.+++||+++++++.+.+ +.+|+++++.||+||++++......
T Consensus       322 -----------------------------~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  372 (562)
T PRK05677        322 -----------------------------KLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPS  372 (562)
T ss_pred             -----------------------------cCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCc
Confidence                                         0123345999999999999995544 4569999999999999877766555


Q ss_pred             CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          263 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       263 ~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      ....++++|.|+++++++++|+ ++.++|.|+.|||+++|++++.||+++++.+...|..+|||+|||+|++++      
T Consensus       373 ~~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~------  445 (562)
T PRK05677        373 QAIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE------  445 (562)
T ss_pred             cCCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC------
Confidence            4456789999999999999994 588999999999999999999999999999999998899999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|.+++.||+||+|++ +|++|+|.+||+.|.++|+|.+++|+|.+++    .+.++|++.+.             
T Consensus       446 ----~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~-------------  507 (562)
T PRK05677        446 ----DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG-------------  507 (562)
T ss_pred             ----CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCC-------------
Confidence                9999999999999997 7999999999999999999999999998764    34566665432             


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         .+.+.+++.+++++.++.|     +.|++|+++++.|.+.+||+.
T Consensus       508 ---~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~iP~t~sGKi~  547 (562)
T PRK05677        508 ---ETLTKEQVMEHMRANLTGY-----KVPKAVEFRDELPTTNVGKIL  547 (562)
T ss_pred             ---CCCCHHHHHHHHHHhhhhc-----cCCcEEEEeccCCCCCccccc
Confidence               3466789999999999988     688999999999999999974

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.2e-43  Score=379.26  Aligned_cols=321  Identities=20%  Similarity=0.298  Sum_probs=267.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~  106 (467)
                      .+++|+|||||||.||+|+++|.     .......+.++++|+++..+|++|.+++..  .+.++..|+++++.   ++.
T Consensus       184 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~  263 (527)
T TIGR02275       184 EVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPT  263 (527)
T ss_pred             ccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHH
Confidence            45699999999999999999997     233445567889999999999999999764  45668999999884   588


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|.++..+.+...+.                                                 
T Consensus       264 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------------------------------------------------  294 (527)
T TIGR02275       264 DCFPLIERHKVTVTALVPPAVALWMQAASKS-------------------------------------------------  294 (527)
T ss_pred             HHHHHHHHhCCeEEEecHHHHHHHHhCcccc-------------------------------------------------
Confidence            8999999999999999999998887632211                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccccccccC-CCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARR-PTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~-~~~  264 (467)
                                                ...+..+|.+++||+++++++.+.+ +.+|.++++.||+||++....... ...
T Consensus       295 --------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~  348 (527)
T TIGR02275       295 --------------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAE  348 (527)
T ss_pred             --------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccc
Confidence                                      0233456999999999999995554 567999999999999764333221 112


Q ss_pred             CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ...+++|.|+ ++..++++| +.+++++.|+.|||+++|+.++.|||++++.+...++.+|||+|||+|++++       
T Consensus       349 ~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~-------  420 (527)
T TIGR02275       349 IIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP-------  420 (527)
T ss_pred             cccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC-------
Confidence            3457899999 589999999 5688999999999999999999999999999999998899999999999998       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.||+|+. +|++|+|.+||+.|.++|+|.+++|+|.+++    .+.++|+++.+              
T Consensus       421 ---~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~--------------  482 (527)
T TIGR02275       421 ---EGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP--------------  482 (527)
T ss_pred             ---CccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC--------------
Confidence               8999999999999985 9999999999999999999999999998765    45677777532              


Q ss_pred             CcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ..+.+++.+++++. +..+     ..|..|.++++.|.+.+||+.
T Consensus       483 ---~~~~~~l~~~l~~~~l~~~-----~~P~~i~~v~~iP~t~sGKv~  522 (527)
T TIGR02275       483 ---ALKAAQLRRFLRERGLAEY-----KLPDRVEFIDSLPLTAVGKID  522 (527)
T ss_pred             ---CCCHHHHHHHHHhCCCccc-----cCCCEEEEeccCCCCCcccee
Confidence               24567788888874 7777     688899999999999999974

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-44  Score=393.85  Aligned_cols=317  Identities=20%  Similarity=0.267  Sum_probs=262.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-h----Hhh-hcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-I----RSL-YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-~----~~~-~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~~  105 (467)
                      .+++|+|||||||.||+|+++|. .    ... ...+++.++|++++..|++|.+++.. .+.++..|+++++.    ++
T Consensus       146 ~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  225 (705)
T PRK06060        146 ALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTP  225 (705)
T ss_pred             CeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCH
Confidence            46799999999999999999997 1    122 23467889999999999999988754 45669999999884    46


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..++..++++++|++.++|+++.++.+....                                                 
T Consensus       226 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-------------------------------------------------  256 (705)
T PRK06060        226 EAAAILSARFGPSVLYGVPNFFARVIDSCSP-------------------------------------------------  256 (705)
T ss_pred             HHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-------------------------------------------------
Confidence            7788889999999999999999888652100                                                 


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ..+.++|.+++||+++++++. ++.+.+ ++++++.||+||++.....+...
T Consensus       257 ----------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  308 (705)
T PRK06060        257 ----------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD  308 (705)
T ss_pred             ----------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC
Confidence                                        234456999999999999984 455566 58999999999998665544443


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....+++|.|+++++++++| +.+++++.|+.|||+++|++++.|||++|+.+.   ..+|||+|||+|++++       
T Consensus       309 ~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~-------  377 (705)
T PRK06060        309 EWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDS-------  377 (705)
T ss_pred             CCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECC-------
Confidence            44578899999999999999 558899999999999999999999999998753   3589999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||+||+||+ +|++|+|.|||+.|.+||.|.+++|+|.++.    .+.++|++..+              
T Consensus       378 ---dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~--------------  439 (705)
T PRK06060        378 ---DGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSG--------------  439 (705)
T ss_pred             ---CceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccc--------------
Confidence               9999999999999997 9999999999999999999999999998764    56678877533              


Q ss_pred             CcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+   ..+++++++++|+.|     ..|..|.++++.|.+.|||+.
T Consensus       440 --~~~~~~~~~~i~~~l~~~L~~~-----~~P~~i~~v~~iP~t~~GKid  482 (705)
T PRK06060        440 --ATIDGSVMRDLHRGLLNRLSAF-----KVPHRFAVVDRLPRTPNGKLV  482 (705)
T ss_pred             --cCcChHHHHHHHHHHHHhCCCC-----cCCcEEEEeecCCCCcchhhH
Confidence              1122   245677777777777     588999999999999999974

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-43  Score=374.14  Aligned_cols=318  Identities=23%  Similarity=0.315  Sum_probs=267.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~~  107 (467)
                      .++.|+|||||||.||+|+++|.     .......++++++|++++.+|++|++++... +.++..|+++++.   ++..
T Consensus       129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  208 (471)
T PRK07787        129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA  208 (471)
T ss_pred             ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence            45699999999999999999997     2334456778899999999999999998865 4569999999884   6889


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++ +++|++.++|+.+..+.+....                                                   
T Consensus       209 ~~~~i~-~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------  236 (471)
T PRK07787        209 YAQALS-EGGTLYFGVPTVWSRIAADPEA---------------------------------------------------  236 (471)
T ss_pred             HHHHHh-hCceEEEcchHHHHHHHhCccc---------------------------------------------------
Confidence            999999 9999999999999888751000                                                   


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccccccccCCCCCC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPTCNV  266 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~~~~~  266 (467)
                                               ...++.+|.+++||+++++++.+.+ +.++.++++.||+||++............
T Consensus       237 -------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  291 (471)
T PRK07787        237 -------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERR  291 (471)
T ss_pred             -------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCccc
Confidence                                     0234456999999999999985554 46799999999999998765544444446


Q ss_pred             CCcccccCCCeEEEEEeCCCCcccC-CCC-ceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          267 LGSVGHPINHTEIKIVDAETNEVLP-AGS-KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~~~~-~g~-~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ++++|.|.++++++++|++ +.+++ +|+ .|||+++|++++.||+++++.+...|.++|||+|||+|++++        
T Consensus       292 ~~~vG~~~~g~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~--------  362 (471)
T PRK07787        292 PGWVGLPLAGVETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP--------  362 (471)
T ss_pred             CCcccccCCCcEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC--------
Confidence            7889999999999999954 77777 444 799999999999999999999999998899999999999999        


Q ss_pred             ccCceEEEEccC-CCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          345 RCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       345 ~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                        ||.+++.||+ ||+++. +|++|+|.+||++|.++|.|++++|++.++.    .+.++|+++                
T Consensus       363 --dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~----------------  423 (471)
T PRK07787        363 --DGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA----------------  423 (471)
T ss_pred             --CCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC----------------
Confidence              9999999996 788885 9999999999999999999999999998664    456777763                


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++.+++++.+..+     .+|..|+++++.|.+.+||+.
T Consensus       424 --~~~~~~~l~~~l~~~l~~~-----~~P~~i~~~~~iP~~~~GKi~  463 (471)
T PRK07787        424 --DDVAADELIDFVAQQLSVH-----KRPREVRFVDALPRNAMGKVL  463 (471)
T ss_pred             --CCCCHHHHHHHHHhhcccc-----cCCcEEEEeccCCCCCCcccc
Confidence              2356678999999988888     688899999999999999974

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.9e-44  Score=390.02  Aligned_cols=330  Identities=18%  Similarity=0.212  Sum_probs=259.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-------  103 (467)
                      -.+++|+|||||||.||||+++|.     .......++++++|++++++|++|++++...+.++..|+++++.       
T Consensus       180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~  259 (631)
T PRK07769        180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVR  259 (631)
T ss_pred             CCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHh
Confidence            346699999999999999999998     22344557788999999999999999998877788889988775       


Q ss_pred             CHHHHHHHHhhcCC---cEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchh
Q 012261          104 AVRNLKDDLQRYQP---HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  180 (467)
Q Consensus       104 ~~~~l~~~i~~~~~---t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (467)
                      ++..+++.++++++   +++.++|.++..+......     +.                       .+.           
T Consensus       260 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~-----~~-----------------------~~~-----------  300 (631)
T PRK07769        260 RPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL-----PK-----------------------DGE-----------  300 (631)
T ss_pred             CHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc-----ch-----------------------hcc-----------
Confidence            45567888888875   7899999988766541000     00                       000           


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh---C---Cceeeccccccc
Q 012261          181 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQVGYGLTES  253 (467)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~---g---~~v~~~YG~TE~  253 (467)
                                                     ...+++++|.+++||+++++++ +++.+.+   |   ..+++.||+||+
T Consensus       301 -------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~  349 (631)
T PRK07769        301 -------------------------------PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEA  349 (631)
T ss_pred             -------------------------------cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhh
Confidence                                           0023556699999999999998 4555555   3   359999999998


Q ss_pred             cccccccCCCC---------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcC
Q 012261          254 SPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM  306 (467)
Q Consensus       254 ~~~~~~~~~~~---------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~  306 (467)
                      ++..+..+...                           ...+++|.|.++.+++++|++++++++.|+.|||+++|++++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~  429 (631)
T PRK07769        350 TLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIG  429 (631)
T ss_pred             eeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCcc
Confidence            76555432211                           012578999999999999988899999999999999999999


Q ss_pred             cccCCCccccccccC-----------------CCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeec
Q 012261          307 QGYFKNPSATKQALD-----------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  369 (467)
Q Consensus       307 ~gY~~~~~~t~~~~~-----------------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  369 (467)
                      .|||++++.|.+.|.                 .+|||+|||+|+++           +|+++|.||+||+||+ +|++|+
T Consensus       430 ~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----------dG~l~i~GR~~d~Ik~-~G~~V~  497 (631)
T PRK07769        430 TGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----------DGELYITGRVKDLVII-DGRNHY  497 (631)
T ss_pred             ccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----------CCEEEEEcccccEEEE-CCeeeC
Confidence            999999999988874                 25899999999994           7999999999999997 999999


Q ss_pred             cHHHHHHHHc-CcCcce--EEEEeeCCC-----------------------ceEEEEecChHHHHHHHHHccccccCccc
Q 012261          370 PLELEEAALR-SSLIRQ--IVVIGQDQR-----------------------RPGAIIVPDKEEVLMAAKRLSIVHADASE  423 (467)
Q Consensus       370 p~eIE~~l~~-~p~V~~--~~Vvg~~~~-----------------------~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  423 (467)
                      |.|||+.|.+ ||.|.+  ++|+|.+++                       .+.++|++.++.               ..
T Consensus       498 p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~---------------~~  562 (631)
T PRK07769        498 PQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGA---------------HK  562 (631)
T ss_pred             HHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcc---------------cc
Confidence            9999999996 899998  999998872                       355666665331               23


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCC-ccccEEEeC--CCCCCCCCccC
Q 012261          424 LSKEKTISLLYGELRKWTSKCSF-QIGPIHVVD--EPFTVNFLCLA  466 (467)
Q Consensus       424 ~~~~~l~~~~~~~l~~~~~~~~~-~i~~i~~~~--~~~~~~~g~~~  466 (467)
                      .+.+++.++++++|..+.    . .++.+.+++  +.|.+.+||+.
T Consensus       563 ~~~~~l~~~~~~~l~~~~----~~~p~~~~~v~~~~lP~t~~GKi~  604 (631)
T PRK07769        563 LDPQPIADDIRAAIAVRH----GVTVRDVLLVPAGSIPRTSSGKIA  604 (631)
T ss_pred             ccHHHHHHHHHHHHHHHc----CCCccEEEEECCCccccCCCcHHH
Confidence            567889999999998631    2 357888887  69999999973

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-43  Score=379.50  Aligned_cols=321  Identities=20%  Similarity=0.288  Sum_probs=267.2

Q ss_pred             ceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec-----CHH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT-----AVR  106 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~-----~~~  106 (467)
                      ++.|+|||||||.||+|+++|.     +......++++++|++++++|++|.+++...+. ++..|+++++.     ++.
T Consensus       178 ~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~  257 (534)
T PRK05852        178 DAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAH  257 (534)
T ss_pred             ceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHH
Confidence            4699999999999999999997     334445678889999999999999999876554 58888888873     477


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|.+.++|+++..+.+.....                                                 
T Consensus       258 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  288 (534)
T PRK05852        258 TFWDDIKAVGATWYTAVPTIHQILLERAATE-------------------------------------------------  288 (534)
T ss_pred             HHHHHHHHcCCcEEEcChHHHHHHHhhcccc-------------------------------------------------
Confidence            8999999999999999999999887632110                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCC--
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPT--  263 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~--  263 (467)
                                              ....++..+|.+.++|+++++++.+. .+.++.++++.||+||++...+.....  
T Consensus       289 ------------------------~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~  344 (534)
T PRK05852        289 ------------------------PSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGI  344 (534)
T ss_pred             ------------------------cccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccc
Confidence                                    00123455699999999999999555 446799999999999998766543321  


Q ss_pred             ---C---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCC
Q 012261          264 ---C---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  337 (467)
Q Consensus       264 ---~---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~  337 (467)
                         .   ...|..|. .++++++++| +.++++++|+.|||+++|+.++.|||++++.+...| .+|||+|||+|++++ 
T Consensus       345 ~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~-  420 (534)
T PRK05852        345 GQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSA-  420 (534)
T ss_pred             ccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeC-
Confidence               1   12334444 6999999999 557899999999999999999999999999999888 589999999999999 


Q ss_pred             CCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHH
Q 012261          338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  413 (467)
Q Consensus       338 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  413 (467)
                               ||.+++.||.+|+|+. +|.+|+|.+||++|.++|+|.+++|+|.+++    .+.++|++++.        
T Consensus       421 ---------dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~--------  482 (534)
T PRK05852        421 ---------AGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES--------  482 (534)
T ss_pred             ---------CCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCC--------
Confidence                     9999999999999996 9999999999999999999999999998764    36677776532        


Q ss_pred             ccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          414 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                              ...+.+++.++++++|+.+     ++|+.|+++++.|.+.+||+.
T Consensus       483 --------~~~~~~~i~~~~~~~l~~~-----~~P~~i~~v~~iP~t~~GKi~  522 (534)
T PRK05852        483 --------APPTAEELVQFCRERLAAF-----EIPASFQEASGLPHTAKGSLD  522 (534)
T ss_pred             --------CCCCHHHHHHHHHHhcccc-----cCCeEEEEhhhcCCCCCcccc
Confidence                    3356778999999988888     688899999999999999974

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-43  Score=373.45  Aligned_cols=317  Identities=23%  Similarity=0.330  Sum_probs=269.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .++.++|||||||.||+|+++|.     +......++++++|++++.+|++|++++...+.++..|+++++.   ++..+
T Consensus       142 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~  221 (483)
T PRK03640        142 EVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKI  221 (483)
T ss_pred             CeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHH
Confidence            34589999999999999999997     22333447889999999999999999988777889999999985   68899


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+...+.                                                   
T Consensus       222 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---------------------------------------------------  250 (483)
T PRK03640        222 NKLLQTGGVTIISVVSTMLQRLLERLGEG---------------------------------------------------  250 (483)
T ss_pred             HHHHHHhCCcEEEeHHHHHHHHHhCcCcc---------------------------------------------------
Confidence            99999999999999999999887531110                                                   


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--CCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--CNV  266 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~  266 (467)
                                               .....+|.+++||+++++.+.+.++.+++++++.||+||++...+.....  ...
T Consensus       251 -------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  305 (483)
T PRK03640        251 -------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTK  305 (483)
T ss_pred             -------------------------ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCccccccc
Confidence                                     11134599999999999999777777799999999999998654433332  346


Q ss_pred             CCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcccc
Q 012261          267 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC  346 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~  346 (467)
                      ++++|.|++++++++.++  +++++.|+.|||+++|++++.||+++++.+...| .+|||+|||++++++          
T Consensus       306 ~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~----------  372 (483)
T PRK03640        306 LGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDE----------  372 (483)
T ss_pred             CCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcC----------
Confidence            789999999999999884  3789999999999999999999999999998888 589999999999999          


Q ss_pred             CceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcc
Q 012261          347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADAS  422 (467)
Q Consensus       347 ~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~  422 (467)
                      +|.+++.||+||+++. +|.+|+|.+||+.+.++|+|.+++|++.+++    .+.++++.+                  .
T Consensus       373 ~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~------------------~  433 (483)
T PRK03640        373 EGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS------------------G  433 (483)
T ss_pred             CCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC------------------C
Confidence            9999999999999996 9999999999999999999999999998764    355556643                  3


Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          423 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       423 ~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ..+.+++.+++++.+..+     ..|+.|+++++.|.+.+||+.
T Consensus       434 ~~~~~~l~~~~~~~l~~~-----~~p~~i~~~~~iP~t~~gK~~  472 (483)
T PRK03640        434 EVTEEELRHFCEEKLAKY-----KVPKRFYFVEELPRNASGKLL  472 (483)
T ss_pred             CCCHHHHHHHHHHhccCC-----CCCcEEEEeCCCCCCCcccee
Confidence            356778999998888887     688899999999999999974

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-43  Score=374.28  Aligned_cols=313  Identities=23%  Similarity=0.257  Sum_probs=265.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .++.|+|||||||.||+|+++|+     +......++++++|+++...|++|.+++...+.++..|+++++.   ++..+
T Consensus       144 ~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~  223 (487)
T PRK07638        144 APFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQV  223 (487)
T ss_pred             CcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHH
Confidence            35899999999999999999998     23444557788999999999999998877777789999999985   68999


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+.  .                                                    
T Consensus       224 ~~~i~~~~~t~~~~~P~~~~~l~~~--~----------------------------------------------------  249 (487)
T PRK07638        224 LDKLETENISVMYTVPTMLESLYKE--N----------------------------------------------------  249 (487)
T ss_pred             HHHHHHcCCeEEEeCcHHHHHHHhC--c----------------------------------------------------
Confidence            9999999999999999999888762  0                                                    


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh-CCceeeccccccccccccccCCC-CC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLTESSPVIAARRPT-CN  265 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-~~  265 (467)
                                               ......+.++++|+++++++.+ +.+.+ +.++++.||+||++.+...+... ..
T Consensus       250 -------------------------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  304 (487)
T PRK07638        250 -------------------------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESER  304 (487)
T ss_pred             -------------------------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCC
Confidence                                     0011225678899999999854 44456 78999999999999776655432 23


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      ..+++|.|+++++++++| +.+.++++|+.|||+++|+.++.|||++++.+...+ .+|||+|||++++++         
T Consensus       305 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~---------  373 (487)
T PRK07638        305 RPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDE---------  373 (487)
T ss_pred             CCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcC---------
Confidence            568999999999999999 568999999999999999999999999998776655 689999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       +|.+++.||++|+|++ +|++|+|.+||+++.++|+|.+++|+|.+++.    +.++|+.                   
T Consensus       374 -~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~-------------------  432 (487)
T PRK07638        374 -EGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG-------------------  432 (487)
T ss_pred             -CCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC-------------------
Confidence             9999999999999997 99999999999999999999999999988754    3444432                   


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ....+++.+++++.+..+     ++|+.|+++++.|.+.+||+.
T Consensus       433 -~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~iP~t~~GKv~  471 (487)
T PRK07638        433 -SATKQQLKSFCLQRLSSF-----KIPKEWHFVDEIPYTNSGKIA  471 (487)
T ss_pred             -CCCHHHHHHHHHHHhhcc-----cCCcEEEEecccCCCCccccc
Confidence             135678999999999888     688899999999999999974

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.8e-44  Score=381.37  Aligned_cols=327  Identities=20%  Similarity=0.219  Sum_probs=260.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-hh--------hcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-SL--------YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-~~--------~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--~~  105 (467)
                      .+++++|||||||.||+|+++|... +.        ...++...+|+.++.+|++|.+++...+.++..|+++++.  ++
T Consensus       170 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~  249 (540)
T PRK05857        170 DPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENT  249 (540)
T ss_pred             CeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEecCCCh
Confidence            4669999999999999999999721 11        1234566789999999999999988778889999998873  67


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....                                                
T Consensus       250 ~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~------------------------------------------------  281 (540)
T PRK05857        250 TSLLEILTTNAVATTCLVPTLLSKLVSELKSA------------------------------------------------  281 (540)
T ss_pred             hHHHHHHHhcCcceEEeChHHHHHHHhccccC------------------------------------------------
Confidence            88999999999999999999999887632110                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC-
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  264 (467)
                                                 ...+.++|.+++||++++....++++.+|+++++.||+||++......+... 
T Consensus       282 ---------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~  334 (540)
T PRK05857        282 ---------------------------NATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG  334 (540)
T ss_pred             ---------------------------CCcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeecccccc
Confidence                                       0234456999999999987776677778999999999999986544332211 


Q ss_pred             ----CCCCcccccCCCeEEEEEeCCCCccc-----CCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261          265 ----NVLGSVGHPINHTEIKIVDAETNEVL-----PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       265 ----~~~g~vG~p~~~~~v~i~d~~~~~~~-----~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~  335 (467)
                          .+.+++|.|.+++++++++++...++     +.|+.|||+++|++++.|||++++.+...| .+|||+|||+|+++
T Consensus       335 ~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d  413 (540)
T PRK05857        335 SIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERR  413 (540)
T ss_pred             cccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEc
Confidence                24689999999999999986544333     457899999999999999999999999888 58999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          +|.+++.||.||+|++ +|++|+|.|||++|..||+|.+++|+|.++.    .+.++++.+++.     
T Consensus       414 ~----------~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~-----  477 (540)
T PRK05857        414 E----------DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL-----  477 (540)
T ss_pred             C----------CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC-----
Confidence            9          9999999999999996 9999999999999999999999999998764    344555554220     


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                .....+++.+.+.+.+++..... .+|+.|.++++.|.+.+||+.
T Consensus       478 ----------~~~~~~~l~~~~~~~~~~~l~~~-~~P~~v~~~~~iP~t~~GKi~  521 (540)
T PRK05857        478 ----------DESAARALKHTIAARFRRESEPM-ARPSTIVIVTDIPRTQSGKVM  521 (540)
T ss_pred             ----------ChhhHHHHHHHHHHHHHhhhccc-cCCeEEEEhhcCCCCCCccee
Confidence                      11123445555555544433332 588999999999999999985

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-43  Score=375.23  Aligned_cols=323  Identities=28%  Similarity=0.418  Sum_probs=275.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|.++|.     +......++++++|++++.+|++|.+++... +.++..|+++++.   ++.
T Consensus       166 ~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  245 (513)
T PRK07656        166 DDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPD  245 (513)
T ss_pred             CceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHH
Confidence            346699999999999999999998     3344456788999999999999999998764 5569999999884   689


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|.++..+.+.....                                                 
T Consensus       246 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------------------------------------------------  276 (513)
T PRK07656        246 EVFRLIETERITVLPGPPTMYNSLLQHPDRS-------------------------------------------------  276 (513)
T ss_pred             HHHHHHHHhCCeEEechHHHHHHHHcCCCcC-------------------------------------------------
Confidence            9999999999999999999999987632110                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCC-ceeeccccccccccccccCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGV-KVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                ...+.++|.+++||+++++++. .+.+.++. .+++.||+||+++....+....
T Consensus       277 --------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  330 (513)
T PRK07656        277 --------------------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDD  330 (513)
T ss_pred             --------------------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccc
Confidence                                      0234456999999999999984 45557788 8999999999988777766443


Q ss_pred             C---CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          265 N---VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       265 ~---~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      .   .++++|.|+++++++++| +.+.+++.|+.|||+++|+.++.||++++..+...+..+|||+|||+|++++     
T Consensus       331 ~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~-----  404 (513)
T PRK07656        331 DRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE-----  404 (513)
T ss_pred             cccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC-----
Confidence            2   268999999999999999 5689999999999999999999999999999988887799999999999998     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||.||++++ +|.+|+|.+||+.|.++|+|.+++|++.+++    .+.++|+++++            
T Consensus       405 -----~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~------------  466 (513)
T PRK07656        405 -----EGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG------------  466 (513)
T ss_pred             -----CeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC------------
Confidence                 8999999999999997 9999999999999999999999999997654    35577776532            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.+++++++++.++++     ..|..|+++++.|.+.+||+.
T Consensus       467 ----~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~iP~t~~gK~~  506 (513)
T PRK07656        467 ----AELTEEELIAYCREHLAKY-----KVPRSIEFLDELPKNATGKVL  506 (513)
T ss_pred             ----CCCCHHHHHHHHHhhcccc-----cCCCEEEEecCCCCCCcccee
Confidence                3456778999999888888     678899999999999999974

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-43  Score=379.55  Aligned_cols=320  Identities=21%  Similarity=0.271  Sum_probs=249.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCC-CCCEEEEECChhHHHHHHHhHHHhhcCceEEecC-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAE-NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-----  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~-~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~-----  104 (467)
                      -.+++|+|||||||.||||+++|+     +......++++ ++|++++++|++|++++...+.++..|+++++.+     
T Consensus       152 ~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~  231 (525)
T PRK05851        152 GGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFS  231 (525)
T ss_pred             CCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHH
Confidence            345699999999999999999998     23344557787 8999999999999999987777899999999853     


Q ss_pred             --HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          105 --VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       105 --~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                        +..+++.++++++|++...|.++..+.+.... .   .                                        
T Consensus       232 ~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~-~---~----------------------------------------  267 (525)
T PRK05851        232 ASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR-V---S----------------------------------------  267 (525)
T ss_pred             HCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc-c---c----------------------------------------
Confidence              55788999999999875555444443321100 0   0                                        


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHH---hCC---ceeeccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA---IGV---KVQVGYGLTESSP  255 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~---~g~---~v~~~YG~TE~~~  255 (467)
                                                    ...++++|.+++||+++++++ +++.+.   +|.   .+++.||+||+++
T Consensus       268 ------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  317 (525)
T PRK05851        268 ------------------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC  317 (525)
T ss_pred             ------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence                                          012344599999999999998 444443   454   4999999999986


Q ss_pred             cccccCCC---------------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc
Q 012261          256 VIAARRPT---------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL  320 (467)
Q Consensus       256 ~~~~~~~~---------------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~  320 (467)
                      ......+.               ....+++|.|+++++++|+|++.+.+++.|+.|||+++|++++.|||++++.+    
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~----  393 (525)
T PRK05851        318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID----  393 (525)
T ss_pred             EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC----
Confidence            55543211               12346899999999999999766677999999999999999999999998643    


Q ss_pred             CCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ce
Q 012261          321 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  396 (467)
Q Consensus       321 ~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~  396 (467)
                       .+|||+|||+|+++           +|.+++.||+||+|++ +|++|+|.|||++|.+||.|.+++|++.+++    ..
T Consensus       394 -~~~~~~TGDl~~~~-----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~  460 (525)
T PRK05851        394 -PDDWFPTGDLGYLV-----------DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARP  460 (525)
T ss_pred             -CCCceeccceEEEE-----------CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCce
Confidence             47899999999986           6899999999999997 9999999999999999999999999987654    34


Q ss_pred             EEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCccC
Q 012261          397 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA  466 (467)
Q Consensus       397 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~~  466 (467)
                      +++|+...                 ...+.+.+.++++++++.+..   ..|+.|++++  +.|.+.+||+.
T Consensus       461 ~~~v~~~~-----------------~~~~~~~~~~~~~~~l~~~l~---~~P~~~~~v~~~~lP~t~~GKi~  512 (525)
T PRK05851        461 GLVIAAEF-----------------RGPDEAGARSEVVQRVASECG---VVPSDVVFVAPGSLPRTSSGKLR  512 (525)
T ss_pred             eEEEEEEe-----------------cCcchHHHHHHHHHHHHHHhC---CCccEEEEECCCCcCcCcchHHH
Confidence            45554421                 113445677888888887732   3678899998  89999999974

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-43  Score=372.32  Aligned_cols=322  Identities=22%  Similarity=0.284  Sum_probs=264.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~---~~~~  107 (467)
                      .+++++|||||||.||+++++|+     +..........++|++++.+|++|++++...+. ++..|+++++.   ++..
T Consensus       136 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~  215 (488)
T PRK09088        136 RVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKR  215 (488)
T ss_pred             CceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHH
Confidence            45699999999999999999997     223333456778999999999999999886654 48889998875   4677


Q ss_pred             HHHHHh--hcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          108 LKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       108 l~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ++..+.  ++++|++.++|.++..+.+....                                 .               
T Consensus       216 ~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------~---------------  247 (488)
T PRK09088        216 TLGRLGDPALGITHYFCVPQMAQAFRAQPGF---------------------------------D---------------  247 (488)
T ss_pred             HHHHHHhhccCCcEEeeHHHHHHHHHhCcCc---------------------------------C---------------
Confidence            777775  48999999999999877652000                                 0               


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCC---
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP---  262 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~---  262 (467)
                                                 ...++++|.+++||++++.+..+.+...|+++++.||+||+++.......   
T Consensus       248 ---------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  300 (488)
T PRK09088        248 ---------------------------AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDV  300 (488)
T ss_pred             ---------------------------ccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCCCccc
Confidence                                       02344569999999999988744444458999999999999875433211   


Q ss_pred             CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          263 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       263 ~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      ....++++|.|.++++++++| +++.+++.|+.|||+++|++++.||+++++.+...++.+|||+|||+|++++      
T Consensus       301 ~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~------  373 (488)
T PRK09088        301 IRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA------  373 (488)
T ss_pred             ccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC------
Confidence            123568999999999999998 5688999999999999999999999999999998888899999999999998      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|.+++.||+||+|+. +|.+|+|.+||++|.++|.|.+++|++.+++    ...++|+++++             
T Consensus       374 ----~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-------------  435 (488)
T PRK09088        374 ----DGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG-------------  435 (488)
T ss_pred             ----CCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC-------------
Confidence                8999999999999996 9999999999999999999999999998764    34577776533             


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ...+.+++.+++++++..+     +.++.|+++++.|.+.+||+.
T Consensus       436 ---~~~~~~~l~~~~~~~l~~~-----~~p~~i~~~~~iP~t~~gKi~  475 (488)
T PRK09088        436 ---APLDLERIRSHLSTRLAKY-----KVPKHLRLVDALPRTASGKLQ  475 (488)
T ss_pred             ---CCCCHHHHHHHHHhhCcCC-----CCCCEEEEcccCCCCCCCcee
Confidence               2346778889998888777     578899999999999999974

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-43  Score=387.21  Aligned_cols=334  Identities=19%  Similarity=0.172  Sum_probs=262.2

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----  103 (467)
                      -.+++|+|||||||.||||+++|..      ......++++++|++++..|+.|+++... .+.++..|++++++     
T Consensus       233 ~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~  312 (629)
T PRK10524        233 NEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPT  312 (629)
T ss_pred             CCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCC
Confidence            3467999999999999999999971      22334568889999999999999988654 45679999998874     


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|+++..+.+.....      .                                     
T Consensus       313 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~-------------------------------------  349 (629)
T PRK10524        313 RPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL------L-------------------------------------  349 (629)
T ss_pred             CCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc------c-------------------------------------
Confidence              3678999999999999999999998776521000      0                                     


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeecccccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                    ...+++.+|.+++||+++++++.+++. .++.++++.||+||++......
T Consensus       350 ------------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  399 (629)
T PRK10524        350 ------------------------------RKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAI  399 (629)
T ss_pred             ------------------------------cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcC
Confidence                                          002345669999999999999966655 6799999999999998533322


Q ss_pred             CC----CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC---CcCcccCCCccccccccC---CCCeeeccc
Q 012261          261 RP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALD---EDGWLNTGD  330 (467)
Q Consensus       261 ~~----~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~---~~~~gY~~~~~~t~~~~~---~~gw~~TGD  330 (467)
                      ..    ...+++++|.|.++++++++|++++++++.|+.|||+++||   +++.|||++++.+...+.   .+|||+|||
T Consensus       400 ~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  479 (629)
T PRK10524        400 ARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFD  479 (629)
T ss_pred             CCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCC
Confidence            21    12356899999999999999965899999999999999998   578999999987766542   468999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHH
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  406 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  406 (467)
                      +|++++          +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.++|+++++.
T Consensus       480 l~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~  548 (629)
T PRK10524        480 WGIRDA----------DGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSD  548 (629)
T ss_pred             cEEEcC----------CCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCC
Confidence            999999          9999999999999997 8999999999999999999999999998765    466888876431


Q ss_pred             HHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          407 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...        .........+++.++++++|..+     .+|+.|.++++.|.+.+||+.
T Consensus       549 ~~~--------~~~~~~~~~~~i~~~~~~~l~~~-----~~P~~i~~v~~lP~T~sGKi~  595 (629)
T PRK10524        549 SLA--------DREARLALEKEIMALVDSQLGAV-----ARPARVWFVSALPKTRSGKLL  595 (629)
T ss_pred             ccc--------cccchHHHHHHHHHHHHhhcCCC-----cCCCEEEEcCCCCCCCCcchH
Confidence            000        00000011234555555555555     588999999999999999973

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=6.4e-43  Score=374.48  Aligned_cols=320  Identities=19%  Similarity=0.317  Sum_probs=268.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~~  107 (467)
                      .+++|+|||||||.||+|+++|+     +......++++++|++++.+|++|.+++... +.++..|+++++.   ++..
T Consensus       196 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~  275 (538)
T TIGR03208       196 DVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPAR  275 (538)
T ss_pred             CeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHH
Confidence            45699999999999999999997     2344456678889999999999999987654 5669999998884   6899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|.++..+.+..+..                                                  
T Consensus       276 ~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~--------------------------------------------------  305 (538)
T TIGR03208       276 AAELIRETGVTFTMASTPFLTDLCRAVKES--------------------------------------------------  305 (538)
T ss_pred             HHHHHHHhCCeEEecCHHHHHHHHhchhcc--------------------------------------------------
Confidence            999999999999999999998886532110                                                  


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCC--
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTC--  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  264 (467)
                                               ...++++|.+++||+++++++. ++.+.+|.++++.||+||++++........  
T Consensus       306 -------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  360 (538)
T TIGR03208       306 -------------------------GAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALE  360 (538)
T ss_pred             -------------------------CCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchh
Confidence                                     0234556999999999999984 455578999999999999987766554322  


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ....++|.|.++++++++| +++.+++.|+.|||+++|++++.||+++++.+.  .+.+|||+|||+|++++        
T Consensus       361 ~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~--------  429 (538)
T TIGR03208       361 KASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDA--------  429 (538)
T ss_pred             hccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECC--------
Confidence            2346789999999999999 568899999999999999999999999998775  34689999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.||+|+. +|++|+|.+||++|.++|+|.+++|+|.++.    .+.++|++.++               
T Consensus       430 --~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~---------------  491 (538)
T TIGR03208       430 --EGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG---------------  491 (538)
T ss_pred             --CCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC---------------
Confidence              9999999999999995 9999999999999999999999999998664    46688887643               


Q ss_pred             cccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+.+++.+++++ ++..+     ..|+.|.++++.|.+.+||+.
T Consensus       492 -~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~iP~t~~gKv~  532 (538)
T TIGR03208       492 -CTLDFAAMVAFLKAQKVALQ-----YIPERLEVVDALPATPAGKIQ  532 (538)
T ss_pred             -CCCCHHHHHHHHHhcchhhc-----cCCcEEEEeccCCCCCccccc
Confidence             34566788888885 67777     578899999999999999974

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.2e-43  Score=374.38  Aligned_cols=323  Identities=19%  Similarity=0.249  Sum_probs=270.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+..++|||||||.||+|+++|.     .......+++.++|++++++|++|.+++...+.++..|+++++.   ++..
T Consensus       181 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~  260 (540)
T PRK06164        181 DAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAAR  260 (540)
T ss_pred             CceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHH
Confidence            345688899999999999999998     23444567888999999999999999998777889999999884   6788


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..+.+....                                                   
T Consensus       261 ~~~~l~~~~~t~~~~~p~~l~~l~~~~~~---------------------------------------------------  289 (540)
T PRK06164        261 TARALRRHRVTHTFGNDEMLRRILDTAGE---------------------------------------------------  289 (540)
T ss_pred             HHHHHHHhCCeeecCCHHHHHHHHHhhcc---------------------------------------------------
Confidence            99999999999999999999998773000                                                   


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEec-CCchHHHHHHHHHhCCceeeccccccccccccccCCCC--
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG-GSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG-~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  264 (467)
                                               ...+.+++.+.++| ++.+.++.++....|+++++.||+||+++.........  
T Consensus       290 -------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  344 (540)
T PRK06164        290 -------------------------RADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPV  344 (540)
T ss_pred             -------------------------cCCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCCCCC
Confidence                                     02344457666665 55666666666655899999999999987665544322  


Q ss_pred             -CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          265 -NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       265 -~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                       ....++|.|. +++.++++|++++.+++.|+.|||+++|++++.||+++++.+...|+.+|||+|||+|++++      
T Consensus       345 ~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~------  418 (540)
T PRK06164        345 SVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG------  418 (540)
T ss_pred             cceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC------
Confidence             2234567775 89999999999999999999999999999999999999999999998899999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC---CCceEEEEecChHHHHHHHHHcccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                          +|.+++.||.||+|++ +|++|+|.+||+.|.++|+|.+++|+|.+   ...+.++++++++              
T Consensus       419 ----~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~--------------  479 (540)
T PRK06164        419 ----DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDG--------------  479 (540)
T ss_pred             ----CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCC--------------
Confidence                8999999999999997 89999999999999999999999999964   3467788887643              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCC---ccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL---CLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g---~~~  466 (467)
                        ...+.+++.++++++++++     +.|+.|.++++.|.+.+|   |+.
T Consensus       480 --~~~~~~~l~~~~~~~l~~~-----~~P~~i~~~~~~P~t~~g~~~Ki~  522 (540)
T PRK06164        480 --ASPDEAGLMAACREALAGF-----KVPARVQVVEAFPVTESANGAKIQ  522 (540)
T ss_pred             --CCCCHHHHHHHHHhhcccC-----cCCcEEEEecCCCCCCCCcccccc
Confidence              3456788999999988888     678899999999999887   763

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=7.2e-43  Score=370.14  Aligned_cols=322  Identities=24%  Similarity=0.326  Sum_probs=271.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|+++|.     +......++++++|++++.+|++|++++... +.++..|+++++.   ++.
T Consensus       156 ~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  235 (504)
T PRK07514        156 DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPD  235 (504)
T ss_pred             CCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHH
Confidence            346699999999999999999998     2233445678899999999999999998755 4569999999985   578


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.+  .++|++.++|.++.++.+.....                                                 
T Consensus       236 ~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  264 (504)
T PRK07514        236 AVLALM--PRATVMMGVPTFYTRLLQEPRLT-------------------------------------------------  264 (504)
T ss_pred             HHHHHH--HhheeeecHHHHHHHHHcCCCCC-------------------------------------------------
Confidence            888888  37999999999998886521000                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTCN  265 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  265 (467)
                                                ...++++|.+++||+++++++.+. .+.++.++++.||+||++...........
T Consensus       265 --------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  318 (504)
T PRK07514        265 --------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGER  318 (504)
T ss_pred             --------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccc
Confidence                                      022345699999999999998554 44678999999999999865544333334


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      ..+++|.|+++++++++|++++.+++.|+.|||+++|++++.||+++++.+...|..+|||+|||++++++         
T Consensus       319 ~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~---------  389 (504)
T PRK07514        319 RAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE---------  389 (504)
T ss_pred             cCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC---------
Confidence            56789999999999999989999999999999999999999999999999999998799999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       +|.+++.||+||+|+. +|++|+|.+||+.+.++++|.+++|++.+++    .+.+++++.++                
T Consensus       390 -~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~----------------  451 (504)
T PRK07514        390 -RGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG----------------  451 (504)
T ss_pred             -CccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCC----------------
Confidence             8999999999999996 9999999999999999999999999997664    46677777543                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.+++.+.+++++..+     ++|+.|+++++.+.+.+||+.
T Consensus       452 ~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~~p~t~~gK~~  491 (504)
T PRK07514        452 AALDEAAILAALKGRLARF-----KQPKRVFFVDELPRNTMGKVQ  491 (504)
T ss_pred             CCCCHHHHHHHHHhhcccC-----CCCcEEEEeccCCCCCCccee
Confidence            3456778999999888887     688899999999999999874

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.4e-42  Score=397.06  Aligned_cols=376  Identities=14%  Similarity=0.088  Sum_probs=287.9

Q ss_pred             eeeeehhhhhhhcccCCC------CCCCceEEEe---eeCCCCCCcceehhhh-----hHhhhcc---cCCCCCCEEEEE
Q 012261           16 SSFFSMFKVIFITLFFSR------RDLPLFSFVL---IDLNTWMPIPKMTNFQ-----IRSLYDI---VPAENGDKFLSM   78 (467)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~------~~~~~~~i~~---TSGTTG~PK~v~~t~~-----~~~~~~~---~~~~~~d~~l~~   78 (467)
                      +.+.+++++...+...+.      .+-.+++|+|   ||||||.||||++||+     +......   ....++|+++++
T Consensus       572 i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~  651 (1452)
T PTZ00297        572 ITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHF  651 (1452)
T ss_pred             cceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEe
Confidence            345667777766542111      1122446775   9999999999999998     1222211   135678999999


Q ss_pred             CChhHHHHHHHhHHHhhcCceEEecCHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 012261           79 LPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA  158 (467)
Q Consensus        79 lPl~h~~g~~~~~~~l~~G~~~v~~~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (467)
                      +|++|++++...+.+++.|+++.+.++..+++++++++||++.++|++|+++.+.++++....+.+.+++++++++.+..
T Consensus       652 LPLaHI~er~~~~~~l~~G~~I~~~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~  731 (1452)
T PTZ00297        652 TPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSR  731 (1452)
T ss_pred             chHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999877777899999999889999999999999999999999999999999999888889999999999887643


Q ss_pred             HHHhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CceEEEEecC--CchHHHHH
Q 012261          159 YTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGG--SLPMHIDL  235 (467)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lr~i~~gG~--~l~~~~~~  235 (467)
                      ...     .+.                             ....+++.++|+++|+.+| .+|.+++||+  +++..+  
T Consensus       732 ~~~-----~g~-----------------------------~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l--  775 (1452)
T PTZ00297        732 LIN-----IHR-----------------------------RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL--  775 (1452)
T ss_pred             HHh-----cCC-----------------------------CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH--
Confidence            211     111                             1234678899999999998 5799999974  455433  


Q ss_pred             HHHHhCCceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeC-CCCcccCCCCceEEEEeCCCcCcccCCCcc
Q 012261          236 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  314 (467)
Q Consensus       236 ~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~-~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~  314 (467)
                         ..++++..+||+||..   +.+.+.....  .|.|+|++++++.+. +.+..   +..|||+++       |+++|+
T Consensus       776 ---~~~i~i~~g~glTE~~---~~~~~~~~~~--~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe  837 (1452)
T PTZ00297        776 ---LEHISVCYVPCLREVF---FLPSEGVFCV--DGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPR  837 (1452)
T ss_pred             ---hCCceEEEecceEEee---eecCCCCccc--CCeecCceEEEEcccccccCC---CCCCeEEEE-------ECCChH
Confidence               3368899999999953   3333333332  399999999999873 33322   246999995       468899


Q ss_pred             ccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC
Q 012261          315 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR  394 (467)
Q Consensus       315 ~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~  394 (467)
                      .|...+  +||+         +          ||.|+|+||+||+|++++|+||+|+.||+.+.++|.|.+++|+|++++
T Consensus       838 ~T~e~~--~gW~---------~----------dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k  896 (1452)
T PTZ00297        838 RTLPIA--AQWK---------R----------DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR  896 (1452)
T ss_pred             HHHHhh--CcCc---------c----------CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC
Confidence            988743  5775         4          899999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecChHHHH-HHHHHcccccc--CcccCCHHH--------HHHHHHHHHHHHhhcCC-CccccEEEeCCCCCCCC
Q 012261          395 RPGAIIVPDKEEVL-MAAKRLSIVHA--DASELSKEK--------TISLLYGELRKWTSKCS-FQIGPIHVVDEPFTVNF  462 (467)
Q Consensus       395 ~~~a~vv~~~~~~~-~~~~~~~~~~~--~~~~~~~~~--------l~~~~~~~l~~~~~~~~-~~i~~i~~~~~~~~~~~  462 (467)
                      .++|+|+++++.+. .|+.++++...  ..+..+.++        +.+.+ +++.+.|+... ++++.|++++++|++||
T Consensus       897 ~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i-~~V~~~n~l~~~ei~k~~~Ll~~~Ft~en  975 (1452)
T PTZ00297        897 PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF-ACIAKENGLHPSNVPEYVHLHPHAFKDHS  975 (1452)
T ss_pred             ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHH-HHHHHHhCcCccceeeEEEEeCCCCCCCC
Confidence            99999999999998 99999886531  111223233        33333 23555555333 56677999999999999


Q ss_pred             CccCC
Q 012261          463 LCLAL  467 (467)
Q Consensus       463 g~~~~  467 (467)
                      |.+||
T Consensus       976 GlLTP  980 (1452)
T PTZ00297        976 TFLTP  980 (1452)
T ss_pred             CcCCh
Confidence            99997

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.8e-43  Score=387.75  Aligned_cols=317  Identities=19%  Similarity=0.283  Sum_probs=254.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec----CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~----~~  105 (467)
                      -.+++|+|||||||.||||+++|.     .......++++++|++++.+|++|++++... +.++..|+++++.    ++
T Consensus       365 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~  444 (718)
T PRK08043        365 EDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHY  444 (718)
T ss_pred             CCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccH
Confidence            356699999999999999999997     2234455688999999999999999998764 5669999999875    34


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+...                                                  
T Consensus       445 ~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------------------------------------  474 (718)
T PRK08043        445 RIVPELVYDRNCTVLFGTSTFLGNYARFAN--------------------------------------------------  474 (718)
T ss_pred             HHHHHHHHhcCCeEEEchHHHHHHhhhhcC--------------------------------------------------
Confidence            677888999999999999999876643100                                                  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ..+++++|.+++||+++++++.+ +.+.+|+++++.||+||+++..+...+..
T Consensus       475 ---------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        475 ---------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             ---------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                                       02345679999999999999954 45567999999999999987766554444


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCC--Cccc-------cccccCCCCeeecccEEEEc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK--NPSA-------TKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~--~~~~-------t~~~~~~~gw~~TGD~~~~~  335 (467)
                      ...+++|.|.|+++++++|.+ +    .++.|||+++|++++.|||+  +++.       +...+..+|||+|||+|+++
T Consensus       528 ~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d  602 (718)
T PRK08043        528 AKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFD  602 (718)
T ss_pred             cCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEc
Confidence            567999999999999999843 2    24569999999999999998  4442       22223357999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEEEEe-cChHHHHHHHHHc
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV-PDKEEVLMAAKRL  414 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv-~~~~~~~~~~~~~  414 (467)
                      +          ||++++.||+||+|++ +|++|+|.|||+++.+++.+.+++|++.+++..+..++ ...+         
T Consensus       603 ~----------dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~---------  662 (718)
T PRK08043        603 E----------QGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD---------  662 (718)
T ss_pred             C----------CCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC---------
Confidence            9          9999999999999997 89999999999999999988899999987765432221 1111         


Q ss_pred             cccccCcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          415 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                             ...+.+++.++++++ ++.|     ..|++|.++++.|.+.+||+.
T Consensus       663 -------~~~~~~~l~~~~~~~~l~~~-----~vP~~i~~v~~lP~t~~GKi~  703 (718)
T PRK08043        663 -------SELTREKLQQYAREHGVPEL-----AVPRDIRYLKQLPLLGSGKPD  703 (718)
T ss_pred             -------cccCHHHHHHHHHhcCCCcc-----cCCceEEEecccCcCCCCCcC
Confidence                   335667888888876 7777     688999999999999999985

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.1e-42  Score=373.51  Aligned_cols=318  Identities=20%  Similarity=0.225  Sum_probs=267.1

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .+++|+|||||||.||+|+++|.     .......++++++|++++.+|++|.+++...+.++..|+++++.   ++..+
T Consensus       181 ~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  260 (542)
T PRK06155        181 DTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGF  260 (542)
T ss_pred             CeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHH
Confidence            46699999999999999999998     22344557889999999999999999988777889999999885   58899


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+.....                                                   
T Consensus       261 ~~~l~~~~~t~~~~~p~~~~~l~~~~~~~---------------------------------------------------  289 (542)
T PRK06155        261 WPAVRRHGATVTYLLGAMVSILLSQPARE---------------------------------------------------  289 (542)
T ss_pred             HHHHHHhCCcEEEchHHHHHHHHcCcCcc---------------------------------------------------
Confidence            99999999999999999998776521110                                                   


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCCCCCCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL  267 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~  267 (467)
                                              ....+++|.++.||  +++++ .++.+.+++++++.||+||++..+..+. ....+
T Consensus       290 ------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~  342 (542)
T PRK06155        290 ------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRP  342 (542)
T ss_pred             ------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCC
Confidence                                    01223447666544  45666 5566678999999999999987766543 23467


Q ss_pred             CcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC---CcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       268 g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~---~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      +++|.|.++++++++| +.+++++.|+.|||+++|+   +++.||+++++.+...| .+|||+|||+|++++        
T Consensus       343 ~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~--------  412 (542)
T PRK06155        343 GSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDA--------  412 (542)
T ss_pred             CCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcC--------
Confidence            8999999999999998 5589999999999999998   69999999999998887 689999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.+|+|+. +|++|+|.+||++|.++|+|.+++|+|.+++    .+.++++++.+               
T Consensus       413 --dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~---------------  474 (542)
T PRK06155        413 --DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDG---------------  474 (542)
T ss_pred             --CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCC---------------
Confidence              9999999999999995 9999999999999999999999999998663    45677776533               


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+..+++++++++++++     +.|..|.++++.|.+.+||+.
T Consensus       475 -~~~~~~~~~~~~~~~l~~~-----~~P~~i~~~~~iP~t~~GKi~  514 (542)
T PRK06155        475 -TALEPVALVRHCEPRLAYF-----AVPRYVEFVAALPKTENGKVQ  514 (542)
T ss_pred             -CCCCHHHHHHHHHhhCcCc-----cCCcEEEEeccCCCCccccee
Confidence             3466788999999998888     678899999999999999984

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=9.8e-43  Score=373.18  Aligned_cols=322  Identities=20%  Similarity=0.289  Sum_probs=269.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~  106 (467)
                      .+++++|||||||.||+|+++|+     +......++++++|++++.+|++|.+++..  .+.++..|+++++.   ++.
T Consensus       183 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~  262 (536)
T PRK10946        183 EVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSAT  262 (536)
T ss_pred             CeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHH
Confidence            35699999999999999999998     334445678899999999999999988753  45669999999884   578


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|..+..+.+......                                                
T Consensus       263 ~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------------  294 (536)
T PRK10946        263 LCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG------------------------------------------------  294 (536)
T ss_pred             HHHHHHHHhCCcEEEeChHHHHHHHhhhcccC------------------------------------------------
Confidence            89999999999999999999998876421110                                                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccC-CCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARR-PTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~-~~~  264 (467)
                                               ....++++|.+++||+++++++. ++.+.+|+++++.||+||++....... ...
T Consensus       295 -------------------------~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~  349 (536)
T PRK10946        295 -------------------------SRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDE  349 (536)
T ss_pred             -------------------------ccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccc
Confidence                                     00234566999999999999994 455567999999999999754333221 122


Q ss_pred             CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ...+++|.|+ ++++++++| +++++++.|+.|||+++|++++.|||++++.+...|+.+|||+|||+|++++       
T Consensus       350 ~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~-------  421 (536)
T PRK10946        350 RIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP-------  421 (536)
T ss_pred             cccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC-------
Confidence            3568899998 799999999 6689999999999999999999999999999999998899999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.+|+++. +|++|+|.+||..|.++|+|.+++|++.+++    .+++++++++               
T Consensus       422 ---~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~---------------  482 (536)
T PRK10946        422 ---DGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE---------------  482 (536)
T ss_pred             ---CCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCC---------------
Confidence               9999999999999996 9999999999999999999999999998765    3567777652               


Q ss_pred             CcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ..+.+++.+++++. +..|     ..|+.|.++++.|.+.+||+.
T Consensus       483 ---~~~~~~l~~~~~~~~l~~~-----~~P~~~~~~~~iP~t~~GKv~  522 (536)
T PRK10946        483 ---PLKAVQLRRFLREQGIAEF-----KLPDRVECVDSLPLTAVGKVD  522 (536)
T ss_pred             ---CCCHHHHHHHHHhCCcccc-----ccCcEEEEeccCCCCCCCccc
Confidence               25667888888774 7777     688899999999999999984

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.6e-43  Score=382.93  Aligned_cols=322  Identities=15%  Similarity=0.034  Sum_probs=256.5

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------  103 (467)
                      -.+++|+|||||||.||||+++|..      ......+++.++|+++++.|+.|++.. ..+.+|..|+++++.      
T Consensus       263 ~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~  341 (655)
T PRK03584        263 DHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFY  341 (655)
T ss_pred             CCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCC
Confidence            3456999999999999999999961      123345788999999999999998653 356779999999884      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++..+|+++..+.+....     +                                        
T Consensus       342 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~----------------------------------------  376 (655)
T PRK03584        342 PDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV-----P----------------------------------------  376 (655)
T ss_pred             CCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC-----c----------------------------------------
Confidence             478899999999999999999999887651000     0                                        


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh--CCceeeccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI--GVKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~--g~~v~~~YG~TE~~~~~~~  259 (467)
                                                  ....+++++|.+++||+++++++.+++ +.+  ++.+.+.||+||+++....
T Consensus       377 ----------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~  428 (655)
T PRK03584        377 ----------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVG  428 (655)
T ss_pred             ----------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccccc
Confidence                                        001345567999999999999995554 466  4789999999998754443


Q ss_pred             cC-CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC--CcCcccCCCccccc--cccC--CCCeeecccEE
Q 012261          260 RR-PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QALD--EDGWLNTGDIG  332 (467)
Q Consensus       260 ~~-~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~--~~~~gY~~~~~~t~--~~~~--~~gw~~TGD~~  332 (467)
                      .. .....++++|.|.++++++++| ++++++ .|+.|||+++++  +++.|||++++.+.  ..+.  .+|||+|||+|
T Consensus       429 ~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~  506 (655)
T PRK03584        429 GNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWI  506 (655)
T ss_pred             CCCCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeE
Confidence            22 2234568999999999999999 567788 799999999996  79999999987543  2221  26799999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~  408 (467)
                      ++++          ||.++|.||+||+||+ +|++|+|.|||++|.+||.|.+++|+|.++    +.+.++|+++++   
T Consensus       507 ~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~---  572 (655)
T PRK03584        507 EITE----------HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEG---  572 (655)
T ss_pred             EECC----------CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCC---
Confidence            9999          9999999999999996 999999999999999999999999999876    467788888643   


Q ss_pred             HHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCcc
Q 012261          409 MAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  465 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~  465 (467)
                                   ...+   .+++.++++++|..+     ..|+.|.++++.|.+.+||+
T Consensus       573 -------------~~~~~~~~~~l~~~~~~~L~~~-----~~P~~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        573 -------------VTLDDALRARIRTTIRTNLSPR-----HVPDKIIAVPDIPRTLSGKK  614 (655)
T ss_pred             -------------CCCcHHHHHHHHHHHHhhCCCC-----cCCCEEEECCCCCCCCCccc
Confidence                         1122   235666666666555     58899999999999999997

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-42  Score=368.26  Aligned_cols=322  Identities=22%  Similarity=0.285  Sum_probs=270.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      ..++.++|||||||.||+|+++|.     +......+++..+|+++...|++|.+++... +.++..|+++++.   ++.
T Consensus       149 ~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  228 (497)
T PRK06145        149 TDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPE  228 (497)
T ss_pred             cceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHH
Confidence            345689999999999999999997     2233345678899999999999999988654 5568899998873   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.......                                                 
T Consensus       229 ~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-------------------------------------------------  259 (497)
T PRK06145        229 AVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-------------------------------------------------  259 (497)
T ss_pred             HHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------------------------------
Confidence            9999999999999999999998887521100                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCC--
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRP--  262 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~--  262 (467)
                                                +..++.+|.+++||+++++++. .+.+.+ +.++++.||+||+++..+....  
T Consensus       260 --------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  313 (497)
T PRK06145        260 --------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGR  313 (497)
T ss_pred             --------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCcc
Confidence                                      0233456999999999999984 445566 6889999999999976554332  


Q ss_pred             CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          263 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       263 ~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      .....+++|.|+++++++++| ++++.++.|+.|||+++|++++.||+++++.+...| .++||+|||++++++      
T Consensus       314 ~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~------  385 (497)
T PRK06145        314 EIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDE------  385 (497)
T ss_pred             ccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcC------
Confidence            223567899999999999999 568899999999999999999999999999999888 589999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|.+++.||.||+|++ +|++|+|.+||+.|.++|+|.+++|++.+++    .+.+++++++.             
T Consensus       386 ----~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------------  447 (497)
T PRK06145        386 ----EGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG-------------  447 (497)
T ss_pred             ----CCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCC-------------
Confidence                9999999999999996 9999999999999999999999999998664    46677777542             


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ...+.+++.++++++|..+     +.++.|.++++.|.+.+||+.
T Consensus       448 ---~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~iP~t~~GKi~  487 (497)
T PRK06145        448 ---ATLTLEALDRHCRQRLASF-----KVPRQLKVRDELPRNPSGKVL  487 (497)
T ss_pred             ---CCCCHHHHHHHHHHhhhcC-----CCCCEEEEeccCCCCCccccc
Confidence               3345678999999998887     678899999999999999974

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=6.1e-43  Score=383.53  Aligned_cols=323  Identities=16%  Similarity=0.080  Sum_probs=253.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------  103 (467)
                      -.|.+|+|||||||.||||+++|..      ......++++++|+++++.|+.|++. ...+.+|..|+++++.      
T Consensus       264 ~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~  342 (652)
T TIGR01217       264 DHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGF  342 (652)
T ss_pred             CCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCC
Confidence            3467999999999999999999972      12334578899999999999999864 3345679999999984      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++...|+++..+.+...     .+                                        
T Consensus       343 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~----------------------------------------  377 (652)
T TIGR01217       343 PATNVLWDIAERTGATLFGTSAKYVMACRKAGV-----HP----------------------------------------  377 (652)
T ss_pred             CCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC-----Cc----------------------------------------
Confidence             46789999999999999888877765543100     00                                        


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC--Cceeeccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG--VKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g--~~v~~~YG~TE~~~~~~~  259 (467)
                                                  .-..+++++|.+++||+++++++.+++. .++  +.+.+.||+||+++....
T Consensus       378 ----------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~  429 (652)
T TIGR01217       378 ----------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAG  429 (652)
T ss_pred             ----------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccC
Confidence                                        0013456679999999999999965554 554  467789999998644433


Q ss_pred             c-CCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC--CcCcccCCCccccc--cccCC--CCeeecccEE
Q 012261          260 R-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QALDE--DGWLNTGDIG  332 (467)
Q Consensus       260 ~-~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~--~~~~gY~~~~~~t~--~~~~~--~gw~~TGD~~  332 (467)
                      . +......+++|.|.++++++++| ++|+++ .|+.|||+++++  +++.|||++++.+.  ..+..  +|||+|||+|
T Consensus       430 ~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg  507 (652)
T TIGR01217       430 ANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWI  507 (652)
T ss_pred             CCCCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcE
Confidence            2 22223568899999999999999 567777 599999999996  68999999998654  22222  6899999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          ||++++.||+||+|+. +|++|+|.|||++|.+||.|.|++|+|.+++    .+.++|+++++   
T Consensus       508 ~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~---  573 (652)
T TIGR01217       508 TLTP----------RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPG---  573 (652)
T ss_pred             EECC----------CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCC---
Confidence            9999          9999999999999995 9999999999999999999999999998764    56788888653   


Q ss_pred             HHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+   .++++++++++|.++     ..|+.|.++++.|.+.+||+.
T Consensus       574 -------------~~~~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~lP~T~sGKi~  616 (652)
T TIGR01217       574 -------------ATLDDALLDRIKRTIRAGLSPR-----HVPDEIIEVPGIPHTLTGKRV  616 (652)
T ss_pred             -------------CCCCHHHHHHHHHHHHhhCCCC-----cCCCEEEECCCCCCCCCccCh
Confidence                         2222   245666666666666     588999999999999999973

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.6e-42  Score=368.15  Aligned_cols=321  Identities=20%  Similarity=0.227  Sum_probs=268.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .+.+|+|||||||.||+|+++|+     +......+++.++|++++++|++|.+++...+.++..|+++++.   ++..+
T Consensus       162 ~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  241 (515)
T TIGR03098       162 DMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDV  241 (515)
T ss_pred             CeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHH
Confidence            45689999999999999999998     33344556788999999999999999988778889999999985   58899


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+....                                                    
T Consensus       242 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------------  269 (515)
T TIGR03098       242 LKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------------------------------  269 (515)
T ss_pred             HHHHHHcCCceEecChHHHHHHHhcccC----------------------------------------------------
Confidence            9999999999999999999888652000                                                    


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHh-CCceeeccccccccccccccCC-CCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAI-GVKVQVGYGLTESSPVIAARRP-TCN  265 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~-g~~v~~~YG~TE~~~~~~~~~~-~~~  265 (467)
                                              ...+..+|.+++||+++++++.+. .+.+ ++.+++.||+||++........ ...
T Consensus       270 ------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  325 (515)
T TIGR03098       270 ------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDR  325 (515)
T ss_pred             ------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccC
Confidence                                    013345599999999999998544 4456 7899999999999865544332 134


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-----------CCeeecccEEEE
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----------DGWLNTGDIGWI  334 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-----------~gw~~TGD~~~~  334 (467)
                      .++++|.|++++++++++ ++++.++.|+.|||+++|+.++.|||++++.+...|..           ++||+|||+|++
T Consensus       326 ~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~  404 (515)
T TIGR03098       326 RPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRR  404 (515)
T ss_pred             CCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEE
Confidence            678999999999999999 66889999999999999999999999999888766532           348999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  410 (467)
                      ++          +|.+++.||.||+|+. +|++|+|.+||++|.++|.|.+++|+|.+++    .+.++++..+.     
T Consensus       405 ~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~-----  468 (515)
T TIGR03098       405 DE----------EGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG-----  468 (515)
T ss_pred             cC----------CceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCC-----
Confidence            99          8999999999999997 8999999999999999999999999997654    45566665322     


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ...+.+++.++++++|.++     ++|+.|+++++.|.+.+||+.
T Consensus       469 -----------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~iP~t~~GK~~  508 (515)
T TIGR03098       469 -----------EELDRAALLAECRARLPNY-----MVPALIHVRQALPRNANGKID  508 (515)
T ss_pred             -----------CCCCHHHHHHHHHhhCccc-----cCCCEEEEeccCCCCCCCCCc
Confidence                       3456778999999888888     688899999999999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.8e-42  Score=372.16  Aligned_cols=324  Identities=24%  Similarity=0.376  Sum_probs=272.8

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEe----cCH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY----TAV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~----~~~  105 (467)
                      -.+++++|||||||.||+|.++|+     +......++++++|+++..+|++|.+++... +.++..|+++++    .++
T Consensus       199 ~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  278 (559)
T PRK08315        199 DDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDP  278 (559)
T ss_pred             CCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCH
Confidence            346699999999999999999997     3344456788999999999999999998765 455899999884    368


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+.+..+.......                              +                 
T Consensus       279 ~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~------------------------------~-----------------  311 (559)
T PRK08315        279 LATLAAVEEERCTALYGVPTMFIAELDHPDFA------------------------------R-----------------  311 (559)
T ss_pred             HHHHHHHHHcCCeEEecchHHHHHHHhCcccC------------------------------C-----------------
Confidence            89999999999999999999997776421000                              0                 


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCC-ceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ..++.+|.+++||++++.++ .++.+.++. ++++.||+||++.+.+.+...
T Consensus       312 ----------------------------~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~  363 (559)
T PRK08315        312 ----------------------------FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTD  363 (559)
T ss_pred             ----------------------------CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcc
Confidence                                        12344599999999999998 455556765 599999999998766655432


Q ss_pred             C---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCC
Q 012261          264 C---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  340 (467)
Q Consensus       264 ~---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~  340 (467)
                      .   ...+++|.|+++++++++|+++++.++.|+.|||+++|++++.|||++++.+...+..++||+|||++++++    
T Consensus       364 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----  439 (559)
T PRK08315        364 DPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE----  439 (559)
T ss_pred             cchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC----
Confidence            2   356899999999999999988799999999999999999999999999999998887799999999999998    


Q ss_pred             CCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccc
Q 012261          341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  416 (467)
Q Consensus       341 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  416 (467)
                            +|.+++.||.+|+++. +|++|+|.+||+.|.++|+|.+++|++.+++    .+.++|++.++           
T Consensus       440 ------dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----------  501 (559)
T PRK08315        440 ------EGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG-----------  501 (559)
T ss_pred             ------CceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCC-----------
Confidence                  8999999999999996 8999999999999999999999999998764    35577776543           


Q ss_pred             cccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          417 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                           ...+.+++.+++++.++.+     +.|+.|+++++.|.+.+||+.
T Consensus       502 -----~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GK~~  541 (559)
T PRK08315        502 -----ATLTEEDVRDFCRGKIAHY-----KIPRYIRFVDEFPMTVTGKIQ  541 (559)
T ss_pred             -----CCCCHHHHHHHHHhhcccc-----cCCcEEEEcccCCCCCCCcee
Confidence                 3456778999999888887     688899999999999999974

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-42  Score=373.88  Aligned_cols=323  Identities=25%  Similarity=0.367  Sum_probs=268.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh--h---Hhhhccc-CC-CCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec---C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ--I---RSLYDIV-PA-ENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~--~---~~~~~~~-~~-~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~---~  104 (467)
                      -.++.++|||||||.||+|+++|+  .   ......+ ++ ..+|++++.+|++|.+++...+ .++..|+++++.   +
T Consensus       219 ~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~  298 (573)
T PRK05605        219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPD  298 (573)
T ss_pred             CCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCC
Confidence            346699999999999999999997  1   1111111 22 3468999999999999987654 458899998884   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.+++++||++.++|+.+..+.+......                                              
T Consensus       299 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------------  332 (573)
T PRK05605        299 IDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----------------------------------------------  332 (573)
T ss_pred             HHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----------------------------------------------
Confidence            8899999999999999999999999876322110                                              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                   ..++++|.+++||+++++++.+. .+.++.++++.||+||++++.......
T Consensus       333 -----------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  383 (573)
T PRK05605        333 -----------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS  383 (573)
T ss_pred             -----------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcc
Confidence                                         12334599999999999998544 456799999999999999877665443


Q ss_pred             -CCCCCcccccCCCeEEEEEeCCC-CcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          264 -CNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 -~~~~g~vG~p~~~~~v~i~d~~~-~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                       ...++++|.|++++.++++|+++ +.+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++     
T Consensus       384 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~-----  457 (573)
T PRK05605        384 DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEE-----  457 (573)
T ss_pred             cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcC-----
Confidence             23568999999999999999776 6899999999999999999999999999999888 478999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||+||+++. +|++|+|.+||+++.+++.|.+++|+|.++    +.+.++++++++            
T Consensus       458 -----~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~------------  519 (573)
T PRK05605        458 -----DGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPG------------  519 (573)
T ss_pred             -----CCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCC------------
Confidence                 8999999999999996 999999999999999999999999999765    456777877643            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.+++++++++++..+     +.|+.|.++++.|.+.+||+.
T Consensus       520 ----~~~~~~~l~~~~~~~l~~~-----~~p~~i~~~~~iP~t~~GKi~  559 (573)
T PRK05605        520 ----AALDPEGLRAYCREHLTRY-----KVPRRFYHVDELPRDQLGKVR  559 (573)
T ss_pred             ----CCCCHHHHHHHHHHhCccc-----cCCcEEEEeccCCCCCccccc
Confidence                3456788899998888877     578899999999999999974

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1e-42  Score=403.32  Aligned_cols=322  Identities=22%  Similarity=0.324  Sum_probs=267.1

Q ss_pred             CCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----C
Q 012261           35 DLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----A  104 (467)
Q Consensus        35 ~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~  104 (467)
                      +-.++.|+|||||||.||+|+++|+     .......++.+++|++++.+|++|.+++.. .+.++..|+++++.    +
T Consensus       781 ~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~  860 (1146)
T PRK08633        781 PDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTD  860 (1146)
T ss_pred             CCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCC
Confidence            3456799999999999999999998     234445677889999999999999999876 45669999998873    5


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|++++.+.+.....                                               
T Consensus       861 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------------------  893 (1146)
T PRK08633        861 ALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH-----------------------------------------------  893 (1146)
T ss_pred             HHHHHHHHHHcCCeEEEecHHHHHHHHhccccC-----------------------------------------------
Confidence            788999999999999999999998886521000                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ..+++++|.+++||+++++++.+ +.+.+|+++++.||+||+++..+...++
T Consensus       894 ----------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~  945 (1146)
T PRK08633        894 ----------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPD  945 (1146)
T ss_pred             ----------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCc
Confidence                                        03455679999999999999954 4556799999999999998766554321


Q ss_pred             ----------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC---CCeeeccc
Q 012261          264 ----------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGD  330 (467)
Q Consensus       264 ----------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~---~gw~~TGD  330 (467)
                                ..+++++|.|.|+++++++|+++++++|.|+.|||+++|++++.||+++|+.+...+.+   +|||+|||
T Consensus       946 ~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD 1025 (1146)
T PRK08633        946 VLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGD 1025 (1146)
T ss_pred             ccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCC
Confidence                      13568999999999999999889999999999999999999999999999999888742   38999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCc--CcceEEEEeeCCCc----eEEEEecCh
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS--LIRQIVVIGQDQRR----PGAIIVPDK  404 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p--~V~~~~Vvg~~~~~----~~a~vv~~~  404 (467)
                      +|++++          ||.+++.||.||+|+. +|++|+|.|||++|.+||  .+.+++|++.+++.    +.++++.. 
T Consensus      1026 ~~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~- 1093 (1146)
T PRK08633       1026 KGHLDE----------DGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG- 1093 (1146)
T ss_pred             EEEEcC----------CceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC-
Confidence            999999          9999999999999996 999999999999999998  56789999987764    44555542 


Q ss_pred             HHHHHHHHHccccccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          405 EEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                        +.+.+++++++.+ .++++     ..|+.|.++++.|.+.+||++
T Consensus      1094 ------------------~~~~~~l~~~~~~~~l~~~-----~~P~~i~~~~~iP~t~~GKi~ 1133 (1146)
T PRK08633       1094 ------------------AEDVEELKRAIKESGLPNL-----WKPSRYFKVEALPLLGSGKLD 1133 (1146)
T ss_pred             ------------------ccCHHHHHHHHHhcCCCcc-----cCCcEEEEecCcCCCCCCCCc
Confidence                              1345667776664 45555     678889999999999999985

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.2e-42  Score=373.14  Aligned_cols=323  Identities=24%  Similarity=0.332  Sum_probs=264.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh--Hhh-hcccCCC----CCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI--RSL-YDIVPAE----NGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~--~~~-~~~~~~~----~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~  105 (467)
                      .++.|+|||||||.||+|+++|+.  ... ...++..    ..++.+.++|++|.++.... +.++..|+++++.   ++
T Consensus       185 ~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~  264 (546)
T PLN02330        185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFEL  264 (546)
T ss_pred             cEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCH
Confidence            456899999999999999999971  111 1122332    34689999999999998654 4558899988884   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+....                              ++                 
T Consensus       265 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------------~~-----------------  297 (546)
T PLN02330        265 RTFLNALITQEVSFAPIVPPIILNLVKNPIV------------------------------EE-----------------  297 (546)
T ss_pred             HHHHHHHHHcCCeeeecCCHHHHHHHhCccc------------------------------cc-----------------
Confidence            8999999999999999999999988652100                              00                 


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC--CceEEEEecCCchHHHHHHH-HHh-CCceeeccccccccccccccC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIG--ISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                  ..+.  .+|.+++||+++++++.+++ +.+ ++++++.||+||++++...+.
T Consensus       298 ----------------------------~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  349 (546)
T PLN02330        298 ----------------------------FDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHG  349 (546)
T ss_pred             ----------------------------cccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCC
Confidence                                        0111  24899999999999995554 466 899999999999986554332


Q ss_pred             C-C----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcC
Q 012261          262 P-T----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  336 (467)
Q Consensus       262 ~-~----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~  336 (467)
                      . .    ....+++|.|+++++++++|+++++++|.|+.|||+++|++++.||+++++.+...++.+|||+|||+|++++
T Consensus       350 ~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~  429 (546)
T PLN02330        350 DPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDD  429 (546)
T ss_pred             CccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeC
Confidence            1 1    1345689999999999999988899999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHH
Q 012261          337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  412 (467)
Q Consensus       337 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  412 (467)
                                ||.+++.||++|+|++ +|++|+|.+||++|.++|.|.+++|++.+++    .+.++|++.++       
T Consensus       430 ----------dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~-------  491 (546)
T PLN02330        430 ----------DGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK-------  491 (546)
T ss_pred             ----------CCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCC-------
Confidence                      9999999999999997 8999999999999999999999999997654    45677777543       


Q ss_pred             HccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          413 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                               ...+.+++.+++++.|+.+     ..|+.|.++++.|.+.+||+.
T Consensus       492 ---------~~~~~~~l~~~~~~~l~~~-----~~p~~~~~v~~iP~t~~GK~~  531 (546)
T PLN02330        492 ---------AKESEEDILNFVAANVAHY-----KKVRVVQFVDSIPKSLSGKIM  531 (546)
T ss_pred             ---------CCCCHHHHHHHHHHhcccc-----cCceEEEEeccCCCCCCccee
Confidence                     3345678889998888887     688889999999999999974

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-42  Score=367.17  Aligned_cols=320  Identities=21%  Similarity=0.247  Sum_probs=264.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-------hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-------SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~  106 (467)
                      .+.+|+|||||||.||+|+++|...       .....+++.++|+++..+|++|.+++...+.++..|++++..   ++.
T Consensus       175 ~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~  254 (516)
T PRK13383        175 PGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAE  254 (516)
T ss_pred             CCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHH
Confidence            4568999999999999999998721       122345788899999999999999998777789999999873   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|.+.++|.++..+.+..+..-                                                
T Consensus       255 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  286 (516)
T PRK13383        255 AALAQASLHRADAFTAVPVVLARILELPPRVR------------------------------------------------  286 (516)
T ss_pred             HHHHHHHHhCCcEEEecHHHHHHHHhcccccc------------------------------------------------
Confidence            99999999999999999999988865311100                                                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCC-C
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT-C  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~  264 (467)
                                               ....++.+|.+++||+++++++. ++.+.+|..+++.||+||++.....+... .
T Consensus       287 -------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~  341 (516)
T PRK13383        287 -------------------------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLR  341 (516)
T ss_pred             -------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccc
Confidence                                     00234556999999999999984 55557899999999999998665544322 2


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|.++++++++| ++++++++|+.|||+++|+.++.||++++..   .+ .+|||+|||+|++++        
T Consensus       342 ~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~--------  408 (516)
T PRK13383        342 DAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDN--------  408 (516)
T ss_pred             cCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcC--------
Confidence            3567899999999999999 5688999999999999999999999987542   23 489999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|++++.||+||+|++ +|++|+|.+||+.|.++|.|.+++|++.++.    .+.++|+++++               
T Consensus       409 --~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~---------------  470 (516)
T PRK13383        409 --AGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG---------------  470 (516)
T ss_pred             --CccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC---------------
Confidence              8999999999999997 9999999999999999999999999997654    45677777643               


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       .+.+.+++.++++++++.+     +++..|.++++.+.+.+||+.
T Consensus       471 -~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~iP~t~~gKi~  510 (516)
T PRK13383        471 -SGVDAAQLRDYLKDRVSRF-----EQPRDINIVSSIPRNPTGKVL  510 (516)
T ss_pred             -CCCCHHHHHHHHHHhcccC-----CCCcEEEEeCCCCCCCCCcCc
Confidence             3355678888988888877     578899999999999999974

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-42  Score=368.98  Aligned_cols=318  Identities=19%  Similarity=0.232  Sum_probs=263.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEe---cCHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMY---TAVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~---~~~~  106 (467)
                      -.+++|+|||||||.||+|+++|.     .......++++++|+++..+|++|.+++...+ .++..|+++++   +++.
T Consensus       152 ~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  231 (529)
T PRK07867        152 DDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSAS  231 (529)
T ss_pred             cceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHH
Confidence            345699999999999999999997     23445567888999999999999999987655 45899999988   4689


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+.+..+....+.     .                                            
T Consensus       232 ~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~-----~--------------------------------------------  262 (529)
T PRK07867        232 GFLPDVRRYGATYANYVGKPLSYVLATPER-----P--------------------------------------------  262 (529)
T ss_pred             HHHHHHHHhCCeEEeccHHHHHHHHhCCCc-----c--------------------------------------------
Confidence            999999999999999999998777542100     0                                            


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV  266 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~  266 (467)
                                                ......+| +++||+.+++.+.++.+.+|+++++.||+||++......+  ...
T Consensus       263 --------------------------~~~~~~lr-~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~  313 (529)
T PRK07867        263 --------------------------DDADNPLR-IVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTP--DTP  313 (529)
T ss_pred             --------------------------cccccceE-EEecCCCChHHHHHHHHHhCCcEEEeecccccccccccCC--CCC
Confidence                                      00112346 4568999998888788888999999999999986554332  234


Q ss_pred             CCcccccCCCeEEEEEeCCCCcccCCCC------------ceEEEE-eCCCcCcccCCCccccccccCCCCeeecccEEE
Q 012261          267 LGSVGHPINHTEIKIVDAETNEVLPAGS------------KGIVKV-RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  333 (467)
Q Consensus       267 ~g~vG~p~~~~~v~i~d~~~~~~~~~g~------------~GEL~v-~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~  333 (467)
                      .+++|.|.++  +++++++++.+++.|+            .|||++ +|++++.||+++++.+...+ .+|||+|||+++
T Consensus       314 ~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~  390 (529)
T PRK07867        314 PGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAY  390 (529)
T ss_pred             CCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEE
Confidence            5789999999  6788878888999998            999998 99999999999999998888 589999999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      +++          +|.+++.||+||+|++ +|++|+|.|||++|.++|+|.+++|+|.+++    .+.+++++.++    
T Consensus       391 ~~~----------~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~----  455 (529)
T PRK07867        391 RDA----------DGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPG----  455 (529)
T ss_pred             EeC----------CCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCC----
Confidence            998          8999999999999997 9999999999999999999999999998765    45677777643    


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHH--HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ..++.+++.++++++  |.++     +.|+.|.++++.|.+.+||+.
T Consensus       456 ------------~~~~~~~l~~~~~~~~~l~~~-----~~P~~i~~~~~iP~t~~GKv~  497 (529)
T PRK07867        456 ------------AKFDPDAFAEFLAAQPDLGPK-----QWPSYVRVCAELPRTATFKVL  497 (529)
T ss_pred             ------------CCCCHHHHHHHHHhhccCCcc-----cCCeEEEEeeccCCCCCccee
Confidence                        346778888888763  5555     688899999999999999974

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-42  Score=369.86  Aligned_cols=322  Identities=22%  Similarity=0.338  Sum_probs=270.4

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec----CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT----AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~----~~~  106 (467)
                      .+++++|||||||.||+|.++|.     +......++++++|++++.+|++|.++....+ .++..|+++++.    ++.
T Consensus       202 ~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~  281 (558)
T PRK12583        202 DPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPL  281 (558)
T ss_pred             CcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHH
Confidence            45689999999999999999997     23344557888999999999999999987654 458899998863    688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.......                              +                  
T Consensus       282 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------------------------~------------------  313 (558)
T PRK12583        282 ATLQAVEEERCTALYGVPTMFIAELDHPQRG------------------------------N------------------  313 (558)
T ss_pred             HHHHHHHHcCCeEEeccHHHHHHHHcccccc------------------------------C------------------
Confidence            8999999999999999999987665421100                              0                  


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC-CceeeccccccccccccccCCC-
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPT-  263 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~-  263 (467)
                                                 ..+.++|.+++||+++++++ .++.+.++ ..+++.||+||++++...+... 
T Consensus       314 ---------------------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~  366 (558)
T PRK12583        314 ---------------------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAAD  366 (558)
T ss_pred             ---------------------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCccc
Confidence                                       12344599999999999998 45556675 5799999999999876655432 


Q ss_pred             --CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          264 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 --~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                        ....+++|.|.+++.++++|++ +.+++.|+.|||+++|+.++.||+++++.+...++.+|||+|||+|++++     
T Consensus       367 ~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-----  440 (558)
T PRK12583        367 DLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE-----  440 (558)
T ss_pred             ccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC-----
Confidence              2356889999999999999976 89999999999999999999999999999988887799999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||+||+|+. +|++|+|.+||+.|..+|+|.+++|+|.+++    .+.++++++++            
T Consensus       441 -----dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------------  502 (558)
T PRK12583        441 -----QGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPG------------  502 (558)
T ss_pred             -----CccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCC------------
Confidence                 9999999999999996 9999999999999999999999999997654    46677776543            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.++++++++++|+.+     +.+++|+++++.|.+.+||+.
T Consensus       503 ----~~~~~~~i~~~~~~~L~~~-----~~P~~i~~v~~lP~t~sGK~~  542 (558)
T PRK12583        503 ----HAASEEELREFCKARIAHF-----KVPRYFRFVDEFPMTVTGKVQ  542 (558)
T ss_pred             ----CCCCHHHHHHHHHhhcccC-----cCCcEEEEeccCCCCCCCCcc
Confidence                3355678999999888887     578899999999999999974

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-42  Score=367.40  Aligned_cols=321  Identities=21%  Similarity=0.306  Sum_probs=271.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~---~~~~  107 (467)
                      .++.|+|||||||.||+|.++|.     .......++++++|++++.+|++|.+++...+. ++..|+++++.   ++..
T Consensus       172 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~  251 (523)
T PRK08316        172 DLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPEL  251 (523)
T ss_pred             CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHH
Confidence            45699999999999999999997     233445568899999999999999999876554 48899999985   6889


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|.++..+.+.....                                                  
T Consensus       252 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------------  281 (523)
T PRK08316        252 ILRTIEAERITSFFAPPTVWISLLRHPDFD--------------------------------------------------  281 (523)
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHcCcccc--------------------------------------------------
Confidence            999999999999999999998876521100                                                  


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-Hh-CCceeeccccccccccccccCCCC-
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AI-GVKVQVGYGLTESSPVIAARRPTC-  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~-g~~v~~~YG~TE~~~~~~~~~~~~-  264 (467)
                                               ...+..+|.+++||++++.++.+.++ .+ +.++++.||+||++++........ 
T Consensus       282 -------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  336 (523)
T PRK08316        282 -------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEH  336 (523)
T ss_pred             -------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCcccc
Confidence                                     02344569999999999999855544 55 789999999999988766654332 


Q ss_pred             -CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 -NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 -~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                       ...+++|.|+++++++++| +.+.+++.|+.|||+++|++++.||+++++.+...| .+|||+|||+|++++       
T Consensus       337 ~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~-------  407 (523)
T PRK08316        337 LRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDE-------  407 (523)
T ss_pred             ccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcC-------
Confidence             3568999999999999999 568999999999999999999999999999999888 689999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||.+++.||+||+|+. +|++|+|.+||+.|.++|+|.+++|+|.+++.    +.++++++++              
T Consensus       408 ---~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------------  469 (523)
T PRK08316        408 ---EGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG--------------  469 (523)
T ss_pred             ---CceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC--------------
Confidence               9999999999999997 99999999999999999999999999987654    6677777643              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        .....+.+.++++++++.+     +.|..+.++++.|.+.+||+.
T Consensus       470 --~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~~p~t~~gKi~  509 (523)
T PRK08316        470 --ATVTEDELIAHCRARLAGF-----KVPKRVIFVDELPRNPSGKIL  509 (523)
T ss_pred             --CCCCHHHHHHHHHHhcccC-----CCCcEEEEecCCCCCCcccee
Confidence              3356678888888888777     588899999999999999973

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-42  Score=366.31  Aligned_cols=325  Identities=19%  Similarity=0.213  Sum_probs=262.2

Q ss_pred             ceEEEeeeCCCCCCcceehhhh--h--------H-hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ--I--------R-SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  103 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~--~--------~-~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---  103 (467)
                      ++.|+|||||||.||+|++++.  .        . .....++++.+|++++.+|++|.+++......+..|+++++.   
T Consensus       150 ~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~  229 (501)
T PRK13390        150 GAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRF  229 (501)
T ss_pred             cEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCc
Confidence            4799999999999999996542  1        0 112346788899999999999999876655567789999884   


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|++.++|+++..+.+...+..                            .                
T Consensus       230 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------~----------------  265 (501)
T PRK13390        230 DAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------T----------------  265 (501)
T ss_pred             CHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------c----------------
Confidence            58899999999999999999999988875211100                            0                


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   ...+.++|.+++||+++++++.+.++ .++.++++.||+||++++......
T Consensus       266 -----------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  316 (501)
T PRK13390        266 -----------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSP  316 (501)
T ss_pred             -----------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecch
Confidence                                         01233459999999999999955544 568999999999999875544332


Q ss_pred             C-CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC--CCeeecccEEEEcCCCC
Q 012261          263 T-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPHHS  339 (467)
Q Consensus       263 ~-~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~--~gw~~TGD~~~~~~~~~  339 (467)
                      . ....+++|.|.++ .++++| ++++++++|+.|||++++++++.||+++|+.+...+..  ++|++|||+|++++   
T Consensus       317 ~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~---  391 (501)
T PRK13390        317 DWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE---  391 (501)
T ss_pred             hhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC---
Confidence            2 2356899999999 699998 67899999999999999999999999999999888753  68999999999999   


Q ss_pred             CCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcc
Q 012261          340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       340 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  415 (467)
                             +|.+++.||.||+|+. +|++|+|.+||++|.++|+|.+++|++.+++    .+.++++++++.         
T Consensus       392 -------dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~---------  454 (501)
T PRK13390        392 -------DGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI---------  454 (501)
T ss_pred             -------CCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC---------
Confidence                   9999999999999996 8999999999999999999999999998764    466777765321         


Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          .......+++.++++++|+.+     ..|+.|.++++.|.+.+||+.
T Consensus       455 ----~~~~~~~~~l~~~~~~~l~~~-----~~P~~~~~~~~iP~t~~GKi~  496 (501)
T PRK13390        455 ----RGSDELARELIDYTRSRIAHY-----KAPRSVEFVDELPRTPTGKLV  496 (501)
T ss_pred             ----CcchhhHHHHHHHHHHhcccC-----CCCcEEEEeccCCCCCcccee
Confidence                001112356778888888777     688999999999999999974

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-42  Score=368.91  Aligned_cols=321  Identities=21%  Similarity=0.292  Sum_probs=264.5

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH-----h-hhccc-CCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----S-LYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~-~~~~~-~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----  103 (467)
                      -.++.|+|||||||.||+|+++|...     . ....+ +.+++|+++..+|++|.+++... ..+..|++.++.     
T Consensus       163 ~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~-~~~~~g~~~~~~~~~~~  241 (528)
T PRK07470        163 DDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQL-CQVARGAATVLLPSERF  241 (528)
T ss_pred             CCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHH-HHHhcCceEEEecccCc
Confidence            34679999999999999999999721     1 11122 56788999999999999998653 456677766553     


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      +++.+++.++++++|++.++|.++..+.+.....                                              
T Consensus       242 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------------  275 (528)
T PRK07470        242 DPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD----------------------------------------------  275 (528)
T ss_pred             CHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC----------------------------------------------
Confidence            5788999999999999999999998886521100                                              


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   ...++++|.+++||++++++. .++.+.+|.++++.||+||+++....+..
T Consensus       276 -----------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~  326 (528)
T PRK07470        276 -----------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPP  326 (528)
T ss_pred             -----------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecch
Confidence                                         023456699999999999887 45556779999999999999876554422


Q ss_pred             C--------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEE
Q 012261          263 T--------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  334 (467)
Q Consensus       263 ~--------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~  334 (467)
                      .        ....+++|.|.++++++++| +++++++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++
T Consensus       327 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~  404 (528)
T PRK07470        327 ALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHL  404 (528)
T ss_pred             hhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEE
Confidence            1        22457899999999999999 568899999999999999999999999999998877 5899999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~  410 (467)
                      ++          +|.+++.||.||+|+. +|++|+|.+||+.|.++|.|.+++|+|.+++.    ..++++.+++     
T Consensus       405 ~~----------~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~-----  468 (528)
T PRK07470        405 DA----------RGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG-----  468 (528)
T ss_pred             cc----------CCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC-----
Confidence            99          9999999999999996 89999999999999999999999999987653    4566666532     


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ...+.+++++++++.|+.+     ..|.+|.++++.|.+.+||+.
T Consensus       469 -----------~~~~~~~~~~~l~~~l~~~-----~~P~~~~~~~~iP~t~~GKi~  508 (528)
T PRK07470        469 -----------APVDEAELLAWLDGKVARY-----KLPKRFFFWDALPKSGYGKIT  508 (528)
T ss_pred             -----------CCCCHHHHHHHHHHhhhcC-----CCCcEEEEeccCCCCCccccc
Confidence                       3366788999999999888     688899999999999999974

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.8e-42  Score=361.62  Aligned_cols=304  Identities=19%  Similarity=0.238  Sum_probs=245.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecCHH---H
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR---N  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~~~---~  107 (467)
                      -.+..++|||||||.||+|++||+     .......+++.+ ++.++++|++|.+|+...+.++..|+++++.+..   .
T Consensus       120 ~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~  198 (452)
T PRK07445        120 ETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKS  198 (452)
T ss_pred             CCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccc
Confidence            356689999999999999999997     222333455554 4678899999999998777889999999986422   2


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      .......+++|++.++|+++..+.+..                                                     
T Consensus       199 ~~~~~~~~~~t~~~~vP~~l~~l~~~~-----------------------------------------------------  225 (452)
T PRK07445        199 GQELPPNPSDFFLSLVPTQLQRLLQLR-----------------------------------------------------  225 (452)
T ss_pred             hhhhhhhcCceEEEehHHHHHHHHhhC-----------------------------------------------------
Confidence            223334688999999999998886510                                                     


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC--C
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--N  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~  265 (467)
                                               ...++++|.+++||+++++++.+.++.+++++++.||+||+++..+...+..  .
T Consensus       226 -------------------------~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~  280 (452)
T PRK07445        226 -------------------------PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDDFLA  280 (452)
T ss_pred             -------------------------hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchhhcc
Confidence                                     0223456999999999999986666667899999999999986554433322  2


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      ..+++|.|.|+++++++         .|+.|||+++|++++.||++++.      ..+|||+|||+|++++         
T Consensus       281 ~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~---------  336 (452)
T PRK07445        281 GNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDA---------  336 (452)
T ss_pred             CCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcC---------
Confidence            45789999999999997         35689999999999999998643      2579999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       ||++++.||+||+|+. +|++|+|.|||++|.+||+|.+++|+|.+++    .+.++++++++                
T Consensus       337 -dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~----------------  398 (452)
T PRK07445        337 -QGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP----------------  398 (452)
T ss_pred             -CCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC----------------
Confidence             9999999999999996 9999999999999999999999999998765    46677776532                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ..+.++++++++++|..|     +.|+.|+++++.|.+.+||+.
T Consensus       399 -~~~~~~l~~~~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  437 (452)
T PRK07445        399 -SISLEELKTAIKDQLSPF-----KQPKHWIPVPQLPRNPQGKIN  437 (452)
T ss_pred             -CCCHHHHHHHHHHhCCcc-----cCCeEEEEecCCCCCCCcccC
Confidence             245678999999988888     688999999999999999974

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-42  Score=368.30  Aligned_cols=319  Identities=21%  Similarity=0.227  Sum_probs=271.0

Q ss_pred             ceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHHH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNLK  109 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l~  109 (467)
                      ++.|+|||||||.||+|+++|.     .......+++.++|++++.+|++|.+++. .+.++..|+++++.   ++..++
T Consensus       170 ~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~  248 (524)
T PRK06188        170 IAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVL  248 (524)
T ss_pred             eEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHH
Confidence            6799999999999999999997     33444567788999999999999998874 45668999999985   688999


Q ss_pred             HHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHH
Q 012261          110 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  189 (467)
Q Consensus       110 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (467)
                      +.++++++|++.++|+++..+.+.....                                                    
T Consensus       249 ~~i~~~~~t~~~~~P~~l~~l~~~~~~~----------------------------------------------------  276 (524)
T PRK06188        249 RAIEEQRITATFLVPTMIYALLDHPDLR----------------------------------------------------  276 (524)
T ss_pred             HHHHHhCCEEEEehHHHHHHHHhCcCcc----------------------------------------------------
Confidence            9999999999999999998887621110                                                    


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCCC-----
Q 012261          190 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-----  263 (467)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-----  263 (467)
                                             ...+..+|.+++||++++++. .++.+.++..+++.||+||++...+.....     
T Consensus       277 -----------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  333 (524)
T PRK06188        277 -----------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPD  333 (524)
T ss_pred             -----------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccc
Confidence                                   023445699999999999986 667778899999999999997655544321     


Q ss_pred             -CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          264 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       264 -~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                       ....+++|.|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||++++++      
T Consensus       334 ~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~------  405 (524)
T PRK06188        334 DPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDE------  405 (524)
T ss_pred             ccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcC------
Confidence             23567899999999999999 458999999999999999999999999999998888 589999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|.+++.||.+|++++ +|++|+|.+||++|.++|+|.+++|++.+++    .+.++++++++             
T Consensus       406 ----~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------------  467 (524)
T PRK06188        406 ----DGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPG-------------  467 (524)
T ss_pred             ----CccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCC-------------
Confidence                9999999999999996 9999999999999999999999999998654    46677877643             


Q ss_pred             cCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ...+.+++.+++++.++.+     ..|.+|+++++.|.+.+||+.
T Consensus       468 ---~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~~P~t~~gKi~  507 (524)
T PRK06188        468 ---AAVDAAELQAHVKERKGSV-----HAPKQVDFVDSLPLTALGKPD  507 (524)
T ss_pred             ---CCCCHHHHHHHHHHhcccC-----CCCcEEEEecCCCCCcccccc
Confidence               3345678888988888877     588899999999999999975

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.1e-42  Score=368.59  Aligned_cols=322  Identities=24%  Similarity=0.381  Sum_probs=262.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-h----HhhhcccC---------CCCC-CEEEEECChhHHHHHHHhHH-HhhcCce
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-I----RSLYDIVP---------AENG-DKFLSMLPPWHVYERACGYF-IFSRGIE   99 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-~----~~~~~~~~---------~~~~-d~~l~~lPl~h~~g~~~~~~-~l~~G~~   99 (467)
                      -.+.+|+|||||||.||+|+++|+ .    ......+.         +..+ ++++..+|++|++++..... .+..|+.
T Consensus       207 ~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~  286 (562)
T PRK12492        207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNH  286 (562)
T ss_pred             CCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCce
Confidence            346799999999999999999997 1    11111121         2333 57789999999999875544 4778887


Q ss_pred             EEec----CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCC
Q 012261          100 LMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  175 (467)
Q Consensus       100 ~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (467)
                      .++.    ++..+++.++++++|++.++|+++..+.+.....                                      
T Consensus       287 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~--------------------------------------  328 (562)
T PRK12492        287 NVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK--------------------------------------  328 (562)
T ss_pred             EEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc--------------------------------------
Confidence            6653    5678899999999999999999998886521000                                      


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeecccccccc
Q 012261          176 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESS  254 (467)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~  254 (467)
                                                           ...+.++|.+++||+++++++.+ +.+.+++++++.||+||++
T Consensus       329 -------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  371 (562)
T PRK12492        329 -------------------------------------DLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETS  371 (562)
T ss_pred             -------------------------------------cccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccC
Confidence                                                 02244569999999999999854 4456799999999999998


Q ss_pred             ccccccCCCC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEE
Q 012261          255 PVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  333 (467)
Q Consensus       255 ~~~~~~~~~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~  333 (467)
                      ++.+.+.... ...+++|.|+++++++++| +.+.++++|+.|||+++|+.++.|||++++.+...|..+|||+|||+|+
T Consensus       372 ~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~  450 (562)
T PRK12492        372 PVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAV  450 (562)
T ss_pred             ceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEE
Confidence            7766554322 3567899999999999999 4688999999999999999999999999999999987789999999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      +++          +|.+++.||+||+|++ +|++|+|.+||+.|.+||.|.+++|+|.++.    .+.+++++..     
T Consensus       451 ~~~----------~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-----  514 (562)
T PRK12492        451 IDP----------DGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARD-----  514 (562)
T ss_pred             ECC----------CCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC-----
Confidence            999          9999999999999997 8999999999999999999999999998664    3556666542     


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ...+.+++++++++++..+     +.|.+|.++++.+.+.+||+.
T Consensus       515 ------------~~~~~~~i~~~~~~~l~~~-----~~P~~i~~~~~~P~t~~GK~~  554 (562)
T PRK12492        515 ------------PGLSVEELKAYCKENFTGY-----KVPKHIVLRDSLPMTPVGKIL  554 (562)
T ss_pred             ------------CCCCHHHHHHHHHHhcccc-----cCCcEEEEeccCCCCCCCcee
Confidence                        2245678999999988888     688899999999999999873

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.4e-42  Score=367.10  Aligned_cols=318  Identities=24%  Similarity=0.364  Sum_probs=262.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-------hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-------SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~  105 (467)
                      .+..++|||||||.||+|++||...       .....++++++|+++..+|++|.+++...+.++..|+++++.    ++
T Consensus       177 ~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~  256 (539)
T PRK07008        177 QASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDG  256 (539)
T ss_pred             cceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCH
Confidence            4668999999999999999999721       122356788899999999999998876667778999999884    57


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+.+..+.+.....                                                
T Consensus       257 ~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------------------------  288 (539)
T PRK07008        257 KSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------------------------------  288 (539)
T ss_pred             HHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------------------------------
Confidence            89999999999999999999999887632110                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ...++++|.+++||+++++++.+ +.+.+++++++.||+||++.....+....
T Consensus       289 ---------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~  341 (539)
T PRK07008        289 ---------------------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKW  341 (539)
T ss_pred             ---------------------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccc
Confidence                                       02345569999999999999854 44577999999999999987554432110


Q ss_pred             -----------CCCCcccccCCCeEEEEEeCCCCcccCCC--CceEEEEeCCCcCcccCCCccccccccCCCCeeecccE
Q 012261          265 -----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  331 (467)
Q Consensus       265 -----------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g--~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~  331 (467)
                                 ....++|.|.|+++++++| +++.+++.+  +.|||+++|+.++.|||+++.   ..+ .+|||+|||+
T Consensus       342 ~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~  416 (539)
T PRK07008        342 KHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDV  416 (539)
T ss_pred             ccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCCcccCce
Confidence                       1246899999999999999 457777754  579999999999999999984   334 3799999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  407 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  407 (467)
                      +++++          ||.+++.||+||+|+. +|++|+|.|||+.+..+|.|.+++|+|.++.    .+.++|+..++  
T Consensus       417 ~~~~~----------dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~--  483 (539)
T PRK07008        417 ATIDA----------DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG--  483 (539)
T ss_pred             EEEcC----------CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCC--
Confidence            99999          9999999999999995 9999999999999999999999999998764    45677766543  


Q ss_pred             HHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          408 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                    ...+.++++++++++++.|     ..|+.|+++++.|.+.+||+.
T Consensus       484 --------------~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~lP~t~sgKi~  523 (539)
T PRK07008        484 --------------AEVTREELLAFYEGKVAKW-----WIPDDVVFVDAIPHTATGKLQ  523 (539)
T ss_pred             --------------CccCHHHHHHHHHhhcccc-----cCCeEEEEecCCCCCCcccee
Confidence                          3456788999999999888     688999999999999999975

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.4e-42  Score=367.88  Aligned_cols=324  Identities=24%  Similarity=0.315  Sum_probs=269.0

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|+++|+     .......++++++|+++..+|++|++++... +.++..|+++++.   ++.
T Consensus       187 ~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~  266 (547)
T PRK06087        187 DELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPD  266 (547)
T ss_pred             CCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHH
Confidence            356799999999999999999997     2344455678899999999999999998755 4558899999885   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|..+..+.+.....                                                 
T Consensus       267 ~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-------------------------------------------------  297 (547)
T PRK06087        267 ACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-------------------------------------------------  297 (547)
T ss_pred             HHHHHHHHcCCCEEeccHHHHHHHHhccccC-------------------------------------------------
Confidence            8999999999999998888777665521110                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC--
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  264 (467)
                                                ...++.+|.+++||+++++++.+.+..+|+++++.||+||+++..+......  
T Consensus       298 --------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~  351 (547)
T PRK06087        298 --------------------------PADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLS  351 (547)
T ss_pred             --------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCCcchh
Confidence                                      0234556999999999999997767777999999999999987766544322  


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|++++.++++| +.+.+++.|+.|||+++|++++.||+++++.+...++.+|||+|||++++++        
T Consensus       352 ~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~--------  422 (547)
T PRK06087        352 RFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE--------  422 (547)
T ss_pred             hcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC--------
Confidence            2346789999999999999 6788999999999999999999999999999988887899999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.+|+|+. +|++|+|.+||++|..+|+|.+++|+|.+++    .+.+++++++.               
T Consensus       423 --~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---------------  484 (547)
T PRK06087        423 --AGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP---------------  484 (547)
T ss_pred             --CCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCC---------------
Confidence              8999999999999985 9999999999999999999999999998655    45677776532               


Q ss_pred             cccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ....+.+++.+++.+ .+..+     ..|.+|.++++.|.+.+||+.
T Consensus       485 ~~~~~~~~~~~~~~~~~l~~~-----~~P~~i~~v~~iP~t~sGK~~  526 (547)
T PRK06087        485 HHSLTLEEVVAFFSRKRVAKY-----KYPEHIVVIDKLPRTASGKIQ  526 (547)
T ss_pred             CCCCCHHHHHHHHHhcccccc-----CCCeEEEEeccCCCCCCCcCc
Confidence            123455677777653 56666     688999999999999999975

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.4e-42  Score=407.67  Aligned_cols=336  Identities=15%  Similarity=0.136  Sum_probs=265.1

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~  105 (467)
                      .+++|+|||||||.||||+++|+     +......+++.++|+++.+.|++|..+....+.+|..|+++++.      ++
T Consensus       416 d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~  495 (1389)
T TIGR03443       416 SNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTP  495 (1389)
T ss_pred             CceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCH
Confidence            45799999999999999999998     22344567889999999999999999888788889999999985      36


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+....                                                   
T Consensus       496 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------------------------------------------  524 (1389)
T TIGR03443       496 GRLAEWMAKYGATVTHLTPAMGQLLSAQA---------------------------------------------------  524 (1389)
T ss_pred             HHHHHHHHHhCCeEEEeCHHHHHHHHhcc---------------------------------------------------
Confidence            68999999999999999999998775410                                                   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHH-h-CCceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-I-GVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~-~-g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ...+.++|.+++||+++++.+.+.+.. . ++++++.||+||++...+.....
T Consensus       525 ---------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~  577 (1389)
T TIGR03443       525 ---------------------------TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIP  577 (1389)
T ss_pred             ---------------------------cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcc
Confidence                                       023455699999999999988544443 3 78999999999998655543211


Q ss_pred             C-----------CCCCcccccCCCeEEEEEeCC-CCcccCCCCceEEEEeCCCcCcccCCCccccccccC----------
Q 012261          264 C-----------NVLGSVGHPINHTEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD----------  321 (467)
Q Consensus       264 ~-----------~~~g~vG~p~~~~~v~i~d~~-~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~----------  321 (467)
                      .           ....++|.|+++++++|+|++ .++++|.|+.|||+|+|++++.||+++|+.|.++|.          
T Consensus       578 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~  657 (1389)
T TIGR03443       578 SRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHW  657 (1389)
T ss_pred             ccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccc
Confidence            0           124679999999999999854 368899999999999999999999999999988873          


Q ss_pred             ------------------CCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCc
Q 012261          322 ------------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLI  383 (467)
Q Consensus       322 ------------------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V  383 (467)
                                        .++||+|||+|++++          ||.++|.||+||+||+ +|++|+|.|||.+|.+||.|
T Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~----------dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V  726 (1389)
T TIGR03443       658 IDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP----------DGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLV  726 (1389)
T ss_pred             cccccccccccccccCCCccceeecCCceeEcC----------CCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcch
Confidence                              257999999999999          9999999999999997 99999999999999999999


Q ss_pred             ceEEEEeeCC----CceEEEEecChHH--HHHHHHHccccccCc--------ccCCHHHHHHHHHHHHHHHhhcCCCccc
Q 012261          384 RQIVVIGQDQ----RRPGAIIVPDKEE--VLMAAKRLSIVHADA--------SELSKEKTISLLYGELRKWTSKCSFQIG  449 (467)
Q Consensus       384 ~~~~Vvg~~~----~~~~a~vv~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~l~~~~~~~~~~i~  449 (467)
                      .+++|++.++    +.++++|+++.+.  ...+...........        .....++++++++++|+.|     .+|.
T Consensus       727 ~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y-----~~P~  801 (1389)
T TIGR03443       727 RENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSY-----AIPT  801 (1389)
T ss_pred             heeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcc-----cCCc
Confidence            9999987643    4578888876221  100000000000000        0012346777777777777     5778


Q ss_pred             cEEEeCCCCCCCCCccC
Q 012261          450 PIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       450 ~i~~~~~~~~~~~g~~~  466 (467)
                      .|+.+++.|.+.|||++
T Consensus       802 ~~~~~~~lP~t~~GKid  818 (1389)
T TIGR03443       802 VIVPLKKLPLNPNGKVD  818 (1389)
T ss_pred             eEEEcccCCCCCCcccc
Confidence            99999999999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-42  Score=374.95  Aligned_cols=327  Identities=18%  Similarity=0.226  Sum_probs=251.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccC-CCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVP-AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~-~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-------  103 (467)
                      .+++|+|||||||.||||+++|+.     ......++ +.++|++++++|++|.+++...+.++..|++.++.       
T Consensus       194 d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~  273 (612)
T PRK12476        194 DVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVR  273 (612)
T ss_pred             ceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHH
Confidence            456999999999999999999972     22334456 67889999999999999987766665555555543       


Q ss_pred             CHHHHHHHHh--hcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 ~~~~l~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                      ++..+++.++  ++++|++..+|.++..+.......    +.                                      
T Consensus       274 ~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~----~~--------------------------------------  311 (612)
T PRK12476        274 RPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP----AE--------------------------------------  311 (612)
T ss_pred             HHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh----hh--------------------------------------
Confidence            4567888884  489999999999988776520000    00                                      


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh---CC---ceeecccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI---GV---KVQVGYGLTESS  254 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~---g~---~v~~~YG~TE~~  254 (467)
                                                   ....+++++| +++||+++++++.+ +.+.+   |.   .+++.||+||++
T Consensus       312 -----------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  361 (612)
T PRK12476        312 -----------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEAT  361 (612)
T ss_pred             -----------------------------hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhh
Confidence                                         0001234558 99999999999844 44444   43   499999999987


Q ss_pred             ccccccCCCC---------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCc
Q 012261          255 PVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ  307 (467)
Q Consensus       255 ~~~~~~~~~~---------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~  307 (467)
                      +..+...+..                           ...+++|.|.++++++|+|++++++++.|+.|||+++|++++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~  441 (612)
T PRK12476        362 LFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGR  441 (612)
T ss_pred             eeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccc
Confidence            6544322110                           0235899999999999999776999999999999999999999


Q ss_pred             ccCCCccccccccC------------------CCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeec
Q 012261          308 GYFKNPSATKQALD------------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  369 (467)
Q Consensus       308 gY~~~~~~t~~~~~------------------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  369 (467)
                      |||++|+.|.+.|.                  +++||+|||+|++ .          +|+++|.||+||+|++ +|++|+
T Consensus       442 GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~----------dG~l~i~GR~~d~I~~-~G~~I~  509 (612)
T PRK12476        442 GYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-L----------DGELYITGRIADLIVI-DGRNHY  509 (612)
T ss_pred             cccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-E----------CCEEEEEeccCcEEEE-CCcccC
Confidence            99999999988874                  1359999999987 4          7999999999999997 999999


Q ss_pred             cHHHHHHHHc-CcCcce--EEEEeeCCC---ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhc
Q 012261          370 PLELEEAALR-SSLIRQ--IVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK  443 (467)
Q Consensus       370 p~eIE~~l~~-~p~V~~--~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  443 (467)
                      |.|||++|.+ ||.|.+  ++|++.+++   .+.++|+++++.               ...+.+++.+++++.+.+..  
T Consensus       510 p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~l~~~~~~~l~~~~--  572 (612)
T PRK12476        510 PQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGT---------------SRADPAPAIDAIRAAVSRRH--  572 (612)
T ss_pred             HHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCc---------------ccccHHHHHHHHHHHHHHhh--
Confidence            9999999985 899999  777887653   577777765431               23466788999999888531  


Q ss_pred             CCCc-cccEEEeC--CCCCCCCCccC
Q 012261          444 CSFQ-IGPIHVVD--EPFTVNFLCLA  466 (467)
Q Consensus       444 ~~~~-i~~i~~~~--~~~~~~~g~~~  466 (467)
                        .. ++.+.+++  +.|.+.+||+.
T Consensus       573 --~~~p~~v~~v~~~~lP~t~~GKi~  596 (612)
T PRK12476        573 --GLAVADVRLVPAGAIPRTTSGKLA  596 (612)
T ss_pred             --CCcceEEEEECCCCcCcCCchHHH
Confidence              23 57888887  59999999974

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1e-41  Score=362.92  Aligned_cols=322  Identities=23%  Similarity=0.316  Sum_probs=265.2

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH-----hhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----SLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~~~  106 (467)
                      -.++.|+|||||||.||+|+++|...     .......+.++|++++++|++|+.+.... +.++..|+++++.   ++.
T Consensus       173 ~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  252 (517)
T PRK08008        173 DDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSAR  252 (517)
T ss_pred             CCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHH
Confidence            34679999999999999999999821     12222356789999999999998776654 4558899999885   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|.++..+........                                                
T Consensus       253 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  284 (517)
T PRK08008        253 AFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------------------------------  284 (517)
T ss_pred             HHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------------------------------
Confidence            99999999999999999999988764210000                                                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCC-CC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP-TC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~  264 (467)
                                                 .....++.+.+++ +++++. .++.+.+++++++.||+||+++....... ..
T Consensus       285 ---------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  336 (517)
T PRK08008        285 ---------------------------DRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDK  336 (517)
T ss_pred             ---------------------------cccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCcccc
Confidence                                       0112236666654 677766 56666789999999999999865554433 23


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC---CCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG---SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~---~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      ...+++|.|.++++++++| +.+++++.|+.|||+++|   ++++.|||++++.+...+..+|||+|||+|++++     
T Consensus       337 ~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~-----  410 (517)
T PRK08008        337 RRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE-----  410 (517)
T ss_pred             ccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC-----
Confidence            4567899999999999999 668999999999999998   5899999999999999998899999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||+||+|+. +|++|+|.+||.++.++|.|.+++|+|.+++    .+.++|+++++            
T Consensus       411 -----~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~------------  472 (517)
T PRK08008        411 -----EGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG------------  472 (517)
T ss_pred             -----CCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC------------
Confidence                 9999999999999996 8999999999999999999999999998653    57788888643            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.++++++++++++.+     ..+..+.++++.|.+.+||+.
T Consensus       473 ----~~~~~~~l~~~~~~~l~~~-----~~P~~~~~v~~iP~t~~gK~~  512 (517)
T PRK08008        473 ----ETLSEEEFFAFCEQNMAKF-----KVPSYLEIRKDLPRNCSGKII  512 (517)
T ss_pred             ----CCCCHHHHHHHHHhhcccc-----cCCcEEEEeccCCCCCcccee
Confidence                3466788999999988888     578899999999999999974

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-41  Score=365.50  Aligned_cols=321  Identities=21%  Similarity=0.252  Sum_probs=267.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCC-CCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~-~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~  105 (467)
                      .++.++|||||||.||+|+++|+     +......+++ ..+|++++.+|++|++++...+.++..|+++++.     ++
T Consensus       175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~  254 (542)
T PRK07786        175 SPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDP  254 (542)
T ss_pred             CeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCH
Confidence            36689999999999999999997     2223334555 5678999999999999987777889999999874     58


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....    .                                           
T Consensus       255 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----~-------------------------------------------  287 (542)
T PRK07786        255 GQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----P-------------------------------------------  287 (542)
T ss_pred             HHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----c-------------------------------------------
Confidence            89999999999999999999999987631110    0                                           


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHh-CCceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAI-GVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~-g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ..+ .+|.+++||+++++++.+. .+.+ +.++++.||+||++++.+.....
T Consensus       288 ----------------------------~~~-~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~  338 (542)
T PRK07786        288 ----------------------------RDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGE  338 (542)
T ss_pred             ----------------------------cCc-ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcc
Confidence                                        111 3499999999999998554 4456 78999999999998776654432


Q ss_pred             --CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          264 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 --~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                        ....+++|.|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++     
T Consensus       339 ~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~-----  411 (542)
T PRK07786        339 DAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDE-----  411 (542)
T ss_pred             cccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcC-----
Confidence              23568899999999999999 668899999999999999999999999999999888 589999999999998     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||.||+|+. +|++|+|.+||+.|.++|.|.+++|+|.+++    ...++++++++.           
T Consensus       412 -----~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------  474 (542)
T PRK07786        412 -----EGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDD-----------  474 (542)
T ss_pred             -----CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCC-----------
Confidence                 9999999999999996 9999999999999999999999999997643    466777765321           


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          .....+++.++++++++.+     ..|+.|+++++.|.+.+||+.
T Consensus       475 ----~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~iP~t~~GKv~  514 (542)
T PRK07786        475 ----AALTLEDLAEFLTDRLARY-----KHPKALEIVDALPRNPAGKVL  514 (542)
T ss_pred             ----CCCCHHHHHHHHHhhccCC-----CCCCEEEEeccCCCCCccccc
Confidence                2245678888888888877     588899999999999999974

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.3e-41  Score=368.20  Aligned_cols=331  Identities=22%  Similarity=0.294  Sum_probs=257.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH-----hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.++.|+|||||||.||+|+++|+..     .....+.....++++..+|++|.+++...+.++..|+++++.   ++..
T Consensus       186 ~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~  265 (579)
T PLN03102        186 HDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPE  265 (579)
T ss_pred             CCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHH
Confidence            45779999999999999999999821     111234456678999999999999987777778888888774   5788


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.+++++||++.++|+++..|.+......                                                 
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------------  296 (579)
T PLN03102        266 IYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-------------------------------------------------  296 (579)
T ss_pred             HHHHHHHcCCeEEEeChHHHHHHHhCccccc-------------------------------------------------
Confidence            9999999999999999999999876311000                                                 


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC----
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT----  263 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~----  263 (467)
                                                .....++.+++||+++++.+.++++.+|.++++.||+||+++..+.+...    
T Consensus       297 --------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~  350 (579)
T PLN03102        297 --------------------------SPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWN  350 (579)
T ss_pred             --------------------------CCcccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCccccccccccccc
Confidence                                      11223478899999999999777777899999999999998654332110    


Q ss_pred             ----------CCCCCcccccCCCeEEEEEeCCCCcccCC--CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccE
Q 012261          264 ----------CNVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  331 (467)
Q Consensus       264 ----------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~--g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~  331 (467)
                                ....+..+.+.+  .+++++.+.+++++.  ++.|||+++|++++.|||++++.+...| .+|||+|||+
T Consensus       351 ~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDl  427 (579)
T PLN03102        351 RLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDV  427 (579)
T ss_pred             cCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCce
Confidence                      011233333444  456666667777775  3679999999999999999999999988 5899999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  407 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  407 (467)
                      |++++          +|.+++.||.||+|+. +|++|+|.+||+.|.+||.|.+++|+|.+++    .+.++|+++++..
T Consensus       428 g~~d~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~  496 (579)
T PLN03102        428 GVIHP----------DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGET  496 (579)
T ss_pred             EEEcC----------CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccc
Confidence            99999          9999999999999996 9999999999999999999999999998774    5668888764321


Q ss_pred             HHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          408 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ....+      ......+.++++++++++|+.|     +.|..|.++++.|.+.+||+.
T Consensus       497 ~~~~~------~~~~~~~~~~l~~~~~~~L~~~-----~~P~~i~~~~~~P~t~~gKi~  544 (579)
T PLN03102        497 TKEDR------VDKLVTRERDLIEYCRENLPHF-----MCPRKVVFLQELPKNGNGKIL  544 (579)
T ss_pred             ccccc------cccccccHHHHHHHHHhhcccc-----cCCeEEEEcccCCCCCccccc
Confidence            00000      0000114567899999999988     688999999999999999974

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.3e-41  Score=398.97  Aligned_cols=325  Identities=18%  Similarity=0.183  Sum_probs=272.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.+++|+|||||||.||||+++|+     +......++++++|++++..|++|.++....+.+|..|+++++.      +
T Consensus       598 ~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~  677 (1296)
T PRK10252        598 HHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRD  677 (1296)
T ss_pred             CCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCC
Confidence            346799999999999999999998     23444567899999999999999999987788889999999984      4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+.....                                               
T Consensus       678 ~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~-----------------------------------------------  710 (1296)
T PRK10252        678 PLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPE-----------------------------------------------  710 (1296)
T ss_pred             HHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccc-----------------------------------------------
Confidence            778999999999999999999998887632110                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                .....+..+|.+++||+++++++.+ +.+.+++++++.||+||++...+.....
T Consensus       711 --------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~  764 (1296)
T PRK10252        711 --------------------------GARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAF  764 (1296)
T ss_pred             --------------------------cccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecc
Confidence                                      0012345669999999999999854 4445689999999999998665543321


Q ss_pred             -------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC------Ceeeccc
Q 012261          264 -------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLNTGD  330 (467)
Q Consensus       264 -------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~------gw~~TGD  330 (467)
                             .....++|.|+++++++|+| +.++++|.|..|||+++|++++.||+++|+.|...|..+      +||+|||
T Consensus       765 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGD  843 (1296)
T PRK10252        765 GEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD  843 (1296)
T ss_pred             cccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCc
Confidence                   22356899999999999999 778999999999999999999999999999999888543      4999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEee---------CC-CceEEEE
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---------DQ-RRPGAII  400 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~---------~~-~~~~a~v  400 (467)
                      +|++++          ||.+++.||+||+||+ +|++|+|.|||++|.++|+|.+++|++.         ++ ..++++|
T Consensus       844 l~~~~~----------~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v  912 (1296)
T PRK10252        844 VARWLD----------DGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYL  912 (1296)
T ss_pred             eEEEcC----------CCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEE
Confidence            999999          9999999999999997 9999999999999999999999987754         11 3588888


Q ss_pred             ecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          401 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       401 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ++..+                ...+.++++++++++|+.|     ..|..|..+++.|.+.|||++
T Consensus       913 ~~~~~----------------~~~~~~~l~~~l~~~Lp~~-----~~P~~~~~~~~lP~t~~GKid  957 (1296)
T PRK10252        913 VSQSG----------------LPLDTSALQAQLRERLPPH-----MVPVVLLQLDQLPLSANGKLD  957 (1296)
T ss_pred             EcCCC----------------CCCCHHHHHHHHHhhCchh-----cCCcEEEEecCCCCCCCcChh
Confidence            87533                2356778999999999988     577899999999999999985

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2e-41  Score=358.91  Aligned_cols=326  Identities=21%  Similarity=0.195  Sum_probs=262.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.++.|+|||||||.||+|+++|+     +......++...+|+++..+|++|.++....+.++..|+++++.      +
T Consensus       141 ~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  220 (502)
T TIGR01734       141 DDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNN  220 (502)
T ss_pred             CCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcC
Confidence            345699999999999999999998     22334456788899999999999999988778889999999885      4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|.+.++|.++..+.......                                               
T Consensus       221 ~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~-----------------------------------------------  253 (502)
T TIGR01734       221 FKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN-----------------------------------------------  253 (502)
T ss_pred             HHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-----------------------------------------------
Confidence            678899999999999999999987665410000                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                  ...+++++.++++|+++++++. ++.+.+ ++++++.||+||+++.......
T Consensus       254 ----------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  305 (502)
T TIGR01734       254 ----------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKI  305 (502)
T ss_pred             ----------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEc
Confidence                                        0344566999999999999984 555566 8899999999998754443221


Q ss_pred             -----CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC---CCCeeecccEEEE
Q 012261          263 -----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD---EDGWLNTGDIGWI  334 (467)
Q Consensus       263 -----~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~---~~gw~~TGD~~~~  334 (467)
                           ......++|.|.++++++++| +.+.+++.|+.|||+++|++++.||+++++.+...|.   +++||+|||+|++
T Consensus       306 ~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~  384 (502)
T TIGR01734       306 TQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI  384 (502)
T ss_pred             cccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEE
Confidence                 122346799999999999999 5589999999999999999999999999999887762   2459999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC--C---CceEEEEecChHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--Q---RRPGAIIVPDKEEVLM  409 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~--~---~~~~a~vv~~~~~~~~  409 (467)
                      ++          + .+++.||.+|+|+. +|++|+|.+||+.|.++|+|+++++++..  .   +.+.++|+++.+... 
T Consensus       385 ~~----------~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~-  451 (502)
T TIGR01734       385 TD----------G-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE-  451 (502)
T ss_pred             EC----------C-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc-
Confidence            97          6 99999999999997 99999999999999999999999999843  2   356677777643110 


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 .......++.+.++++++.+     +.|+.|.++++.|.+.+||+.
T Consensus       452 -----------~~~~~~~~i~~~~~~~l~~~-----~~P~~~~~v~~lP~t~~gKv~  492 (502)
T TIGR01734       452 -----------KEFQLTKAIKKELKKSLPAY-----MIPRKFIYRDQLPLTANGKID  492 (502)
T ss_pred             -----------cchhhHHHHHHHHhhhChhh-----cCCcEEEEccccCCCCCCccc
Confidence                       01111256777777777777     688999999999999999984

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-41  Score=365.99  Aligned_cols=324  Identities=24%  Similarity=0.335  Sum_probs=263.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-------hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-------SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~  105 (467)
                      .+++++|||||||.||+|+++|+..       .....+++.++|++++.+|++|.+++...+.++..|+++++.    ++
T Consensus       182 ~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~  261 (576)
T PRK05620        182 TAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSA  261 (576)
T ss_pred             ceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCH
Confidence            3569999999999999999999721       112346788999999999999999988778889999998874    68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+.+..+........                                               
T Consensus       262 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------  294 (576)
T PRK05620        262 PTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----------------------------------------------  294 (576)
T ss_pred             HHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----------------------------------------------
Confidence            899999999999999999999988875321100                                               


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                  ....++|.+++||+++++++. ++.+.+|+++++.||+||++.......+..
T Consensus       295 ----------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  346 (576)
T PRK05620        295 ----------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPS  346 (576)
T ss_pred             ----------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCC
Confidence                                        111245999999999999984 455567999999999999987655433211


Q ss_pred             --------CCCCcccccCCCeEEEEEeCCCCcccC--CCCceEEEEeCCCcCcccCCCcccc----------------cc
Q 012261          265 --------NVLGSVGHPINHTEIKIVDAETNEVLP--AGSKGIVKVRGSQVMQGYFKNPSAT----------------KQ  318 (467)
Q Consensus       265 --------~~~g~vG~p~~~~~v~i~d~~~~~~~~--~g~~GEL~v~~~~~~~gY~~~~~~t----------------~~  318 (467)
                              ....++|.+.++++++++|+  +..++  +++.|||+++|+.++.|||++++.+                ..
T Consensus       347 ~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~  424 (576)
T PRK05620        347 GVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAND  424 (576)
T ss_pred             ccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhc
Confidence                    12347899999999999984  55553  5789999999999999999999887                33


Q ss_pred             ccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc---
Q 012261          319 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR---  395 (467)
Q Consensus       319 ~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~---  395 (467)
                      .+..+|||+|||++++++          ||.+++.||+||+|+. +|++|+|.+||++|.+||.|.+++|+|.++..   
T Consensus       425 ~~~~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~  493 (576)
T PRK05620        425 RFTADGWLRTGDVGSVTR----------DGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE  493 (576)
T ss_pred             ccccCCcEecCceEEEcC----------CceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCc
Confidence            355689999999999999          9999999999999995 99999999999999999999999999987653   


Q ss_pred             -eEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          396 -PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       396 -~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ..+++++.++.             ...+.+.++++++++++|+.+     ..|+.|.++++.|.+.+||+.
T Consensus       494 ~~~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~~P~t~~GKv~  547 (576)
T PRK05620        494 RPLAVTVLAPGI-------------EPTRETAERLRDQLRDRLPNW-----MLPEYWTFVDEIDKTSVGKFD  547 (576)
T ss_pred             eeEEEEEecCCC-------------CcccccHHHHHHHHHhhCccc-----cCCeEEEEeccCCCCCcccCc
Confidence             55667665431             112345688999999999988     688999999999999999974

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-41  Score=359.32  Aligned_cols=321  Identities=28%  Similarity=0.457  Sum_probs=273.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~l  108 (467)
                      .++.++|||||||.||++.++|.     .......++++++|++++.+|++|.+++...+.++..|+++++.   ++..+
T Consensus       168 ~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~  247 (521)
T PRK06187        168 DAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENL  247 (521)
T ss_pred             ceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHH
Confidence            46699999999999999999997     23344567899999999999999999998877799999999885   58899


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.+++++||++.++|+++..+.+.....                                                   
T Consensus       248 ~~~l~~~~~t~l~~~p~~~~~l~~~~~~~---------------------------------------------------  276 (521)
T PRK06187        248 LDLIETERVTFFFAVPTIWQMLLKAPRAY---------------------------------------------------  276 (521)
T ss_pred             HHHHHHhCCeEEEchHHHHHHHHcCcCCC---------------------------------------------------
Confidence            99999999999999999999887632110                                                   


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccccccccCCCCC--
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPTCN--  265 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~~~~--  265 (467)
                                              ...+..+|.+++||+++++++.+.+ +.+++++++.||+||+++..........  
T Consensus       277 ------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  332 (521)
T PRK06187        277 ------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLP  332 (521)
T ss_pred             ------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccc
Confidence                                    0234455999999999999995554 4569999999999999877766654333  


Q ss_pred             ----CCCcccccCCCeEEEEEeCCCCcccCC--CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC
Q 012261          266 ----VLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  339 (467)
Q Consensus       266 ----~~g~vG~p~~~~~v~i~d~~~~~~~~~--g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~  339 (467)
                          ..+++|.|.+++.++++|+ .+.+++.  |+.|||+++++.++.||+++++.+...| .+|||+|||++++++   
T Consensus       333 ~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~---  407 (521)
T PRK06187        333 GQWTKRRSAGRPLPGVEARIVDD-DGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDE---  407 (521)
T ss_pred             cccccCCccccccCCeEEEEECC-CCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcC---
Confidence                6789999999999999994 5778888  9999999999999999999999888888 578999999999998   


Q ss_pred             CCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcc
Q 012261          340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       340 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  415 (467)
                             +|.+++.||.+|++++ +|.+|+|.+||+.|.++++|.+++|++.+++    .+.+++++.++          
T Consensus       408 -------~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------  469 (521)
T PRK06187        408 -------DGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG----------  469 (521)
T ss_pred             -------CCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC----------
Confidence                   8999999999999997 9999999999999999999999999987553    56777777543          


Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                            ...+.+++.++++++++.+     ..|..|.++++.|.+.+||+.
T Consensus       470 ------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~~P~t~~gK~~  509 (521)
T PRK06187        470 ------ATLDAKELRAFLRGRLAKF-----KLPKRIAFVDELPRTSVGKIL  509 (521)
T ss_pred             ------CCCCHHHHHHHHHHhccCC-----CCceEEEEccCCCCCCCCCee
Confidence                  3356778889988888877     577899999999999999974

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.7e-41  Score=372.85  Aligned_cols=327  Identities=14%  Similarity=0.063  Sum_probs=257.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecC----HHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA----VRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~----~~~  107 (467)
                      .+++|+|||||||.||||+++|..     ......++++++|+++++.|+.|+++....+.+|..|+++++++    +..
T Consensus       357 ~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~  436 (728)
T PLN03052        357 AFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRG  436 (728)
T ss_pred             CcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCCh
Confidence            457999999999999999999971     22233467899999999999999999876677899999999863    467


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++..+|+++..+.+....                              .                    
T Consensus       437 ~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~------------------------------~--------------------  466 (728)
T PLN03052        437 FAKFVQDAKVTMLGTVPSIVKTWKNTNCM------------------------------A--------------------  466 (728)
T ss_pred             HHHHHHHHCCCEEEECHHHHHHHHhcCCc------------------------------c--------------------
Confidence            99999999999999999999887652000                              0                    


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC-CceeeccccccccccccccCC-CC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG-VKVQVGYGLTESSPVIAARRP-TC  264 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g-~~v~~~YG~TE~~~~~~~~~~-~~  264 (467)
                                               ..+++++|.+++||++++++...++. .++ .++++.||+||+++.+....+ ..
T Consensus       467 -------------------------~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~  521 (728)
T PLN03052        467 -------------------------GLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQP  521 (728)
T ss_pred             -------------------------cCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCC
Confidence                                     03455679999999999998855544 445 579999999999865543322 23


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCC--ceEEEEeCCC--cCcccCCCccccccccC------CCCeeecccEEEE
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQ--VMQGYFKNPSATKQALD------EDGWLNTGDIGWI  334 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~--~GEL~v~~~~--~~~gY~~~~~~t~~~~~------~~gw~~TGD~~~~  334 (467)
                      ..++++|.|.++++++++| ++|++++.|+  .|||+++++.  ...+|+++. .....|.      ++.||+|||++++
T Consensus       522 ~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~  599 (728)
T PLN03052        522 QAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFER  599 (728)
T ss_pred             CCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEE
Confidence            4568999999999999999 6789999985  6999998652  234566653 2222231      2239999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHH-cCcCcceEEEEeeCC-----CceEEEEecChHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL-RSSLIRQIVVIGQDQ-----RRPGAIIVPDKEEVL  408 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~-~~p~V~~~~Vvg~~~-----~~~~a~vv~~~~~~~  408 (467)
                      ++          +|.+++.||+||+||+ +|++|+|.|||++|. .||.|.|++|+|.++     +.+.++|+++.+   
T Consensus       600 d~----------dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~---  665 (728)
T PLN03052        600 TS----------GGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDP---  665 (728)
T ss_pred             CC----------CCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecC---
Confidence            99          9999999999999997 999999999999995 799999999999864     346788887621   


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ++.+++.+++++.+++.|++...+.. +|+.|+++++.|.+.|||+.
T Consensus       666 -----------~g~~~~~~~L~~~i~~~i~~~l~~~~-~p~~i~~v~~lP~T~sGKi~  711 (728)
T PLN03052        666 -----------PGSNPDLNELKKIFNSAIQKKLNPLF-KVSAVVIVPSFPRTASNKVM  711 (728)
T ss_pred             -----------CCCCCCHHHHHHHHHHHHHhhcCCcc-CCCEEEEcCCCCCCCchHHH
Confidence                       01345667888888888877655553 88999999999999999973

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.3e-41  Score=356.91  Aligned_cols=324  Identities=20%  Similarity=0.199  Sum_probs=269.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh--------hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ--------IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~--------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~  104 (467)
                      -.++.++|||||||.||+|+++|.        .......+++.++|++++.+|++|..+....+.++..|+++++.   +
T Consensus       152 ~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  231 (509)
T PRK12406        152 PQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFD  231 (509)
T ss_pred             CCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCC
Confidence            456799999999999999998664        11233457788999999999999999887777788889998884   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+......                                              
T Consensus       232 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------------  265 (509)
T PRK12406        232 PEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR----------------------------------------------  265 (509)
T ss_pred             HHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc----------------------------------------------
Confidence            8899999999999999999999988865211100                                              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ...++.++|.+++||+++++++.+.+. .++..+++.||+||++.+...+...
T Consensus       266 ---------------------------~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  318 (509)
T PRK12406        266 ---------------------------AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSED  318 (509)
T ss_pred             ---------------------------ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCccc
Confidence                                       002345669999999999999966555 5699999999999999866554332


Q ss_pred             -CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCc-ccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          264 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ-GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 -~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~-gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                       ...++++|.|.++++++++| +++++++.|+.|||++++++++. +|+++++.+...+ .+|||+|||++++++     
T Consensus       319 ~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~-----  391 (509)
T PRK12406        319 ALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDA-----  391 (509)
T ss_pred             ccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcC-----
Confidence             24568999999999999999 56899999999999999998865 8999988887766 689999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||.||+|+. +|.+|+|.+||+.|.++|+|.+++|++.++.    .+.++|++++.            
T Consensus       392 -----~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------------  453 (509)
T PRK12406        392 -----DGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG------------  453 (509)
T ss_pred             -----CceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC------------
Confidence                 9999999999999996 9999999999999999999999999998664    35677776532            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.+++.+.+++.+..+     +.|..+.++++.|.+.+||+.
T Consensus       454 ----~~~~~~~l~~~l~~~l~~~-----~~P~~i~~~~~iP~t~~GK~~  493 (509)
T PRK12406        454 ----ATLDEADIRAQLKARLAGY-----KVPKHIEIMAELPREDSGKIF  493 (509)
T ss_pred             ----CCCCHHHHHHHHHHhcccC-----CCCcEEEEeccCCCCCccchh
Confidence                2356788999999888888     678899999999999999873

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-41  Score=363.74  Aligned_cols=322  Identities=28%  Similarity=0.413  Sum_probs=265.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH------hhhcccCCCC-CCEEEEECChhHHHHHHHhH-HHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR------SLYDIVPAEN-GDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~------~~~~~~~~~~-~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~---~~  105 (467)
                      .+++++|||||||.||+|.++|...      .....++... ++++++++|++|.++....+ .++..|+++++.   ++
T Consensus       207 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  286 (563)
T PRK06710        207 DLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDM  286 (563)
T ss_pred             CEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCH
Confidence            4569999999999999999999721      1111234443 46889999999999986544 568899998884   67


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....                                                
T Consensus       287 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------  318 (563)
T PRK06710        287 KMVFEAIKKHKVTLFPGAPTIYIALLNSPLLK------------------------------------------------  318 (563)
T ss_pred             HHHHHHHHHcCCeEEeccHHHHHHHHcCCccc------------------------------------------------
Confidence            88999999999999999999998876521000                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCC-C
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP-T  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~-~  263 (467)
                                                 ...+..+|.+++||+++++++.++++ .++.++++.||+||++........ .
T Consensus       319 ---------------------------~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  371 (563)
T PRK06710        319 ---------------------------EYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWE  371 (563)
T ss_pred             ---------------------------cCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccc
Confidence                                       01223458999999999999965554 579999999999999876544332 2


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ...++++|.|.+++.+++++++++.+++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||++++++       
T Consensus       372 ~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~-------  443 (563)
T PRK06710        372 KRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDE-------  443 (563)
T ss_pred             cccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcC-------
Confidence            234678999999999999998889999999999999999999999999999998888 589999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.||+|++ +|++|+|.+||+.|.++|.|.+++|++.+++    .+.++|+.+++              
T Consensus       444 ---~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~--------------  505 (563)
T PRK06710        444 ---DGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEG--------------  505 (563)
T ss_pred             ---CCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCC--------------
Confidence               8999999999999997 8999999999999999999999999998664    45577776543              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++.++++++++.+     ..++.|.++++.|.+.+||+.
T Consensus       506 --~~~~~~~l~~~~~~~l~~~-----~~P~~~~~v~~iP~t~~GKi~  545 (563)
T PRK06710        506 --TECSEEELNQFARKYLAAY-----KVPKVYEFRDELPKTTVGKIL  545 (563)
T ss_pred             --CCCCHHHHHHHHHHhcccc-----cCCcEEEEcccCCCCccchhh
Confidence              3356778888888888877     577899999999999999974

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=5.2e-41  Score=356.92  Aligned_cols=325  Identities=19%  Similarity=0.268  Sum_probs=268.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH-----h-hhcccCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec----C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----S-LYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT----A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~-~~~~~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~----~  104 (467)
                      -.++.|+|||||||.||+|+++|...     . ....++++++|+++..+|++|.+++...+ .++..|+++++.    +
T Consensus       161 ~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  240 (508)
T TIGR02262       161 DDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPT  240 (508)
T ss_pred             CCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCC
Confidence            34669999999999999999999711     1 23456889999999999999999986544 558899988874    5


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.+++++||++.++|.++..+.+.....                                               
T Consensus       241 ~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~-----------------------------------------------  273 (508)
T TIGR02262       241 PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP-----------------------------------------------  273 (508)
T ss_pred             HHHHHHHHHHHCCcEEecchHHHHHHhcCcccc-----------------------------------------------
Confidence            789999999999999999999887765410000                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ......+|.+++||+++++++. .+.+.+|+++++.||+||++++...+...
T Consensus       274 ----------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  325 (508)
T TIGR02262       274 ----------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPG  325 (508)
T ss_pred             ----------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCcc
Confidence                                        0112345999999999999985 45556799999999999999876665544


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....+++|.|.++++++++| +++.++++|+.|||+++|++++.||+++++.+...| .+|||+|||++++++       
T Consensus       326 ~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~-------  396 (508)
T TIGR02262       326 DVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRND-------  396 (508)
T ss_pred             CCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcC-------
Confidence            44568899999999999999 789999999999999999999999999999998888 589999999999998       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.||+|++ +|++|+|.+||+.|.++|+|.++++++.++    ..+.+++++.++.             
T Consensus       397 ---~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------  459 (508)
T TIGR02262       397 ---DGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ-------------  459 (508)
T ss_pred             ---CccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC-------------
Confidence               8999999999999997 799999999999999999999999999754    3466777776431             


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+...+++.+.++++|..+     +.++.++++++.+.+.+||+.
T Consensus       460 ~~~~~~~~~i~~~~~~~l~~~-----~~p~~i~~~~~iP~t~~gKi~  501 (508)
T TIGR02262       460 DIDTALETELKEHVKDRLAPY-----KYPRWIVFVDDLPKTATGKIQ  501 (508)
T ss_pred             ccccccHHHHHHHHHHhcccC-----CCCceEEEecCCCCCCCCcEe
Confidence            011234567888888888777     577889999999999999974

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-41  Score=435.62  Aligned_cols=320  Identities=18%  Similarity=0.193  Sum_probs=276.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~  105 (467)
                      .+++|+|||||||.||||+++|+     +......++++++|+++.++|++|.++....+.+|..|+++++.      ++
T Consensus       656 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~  735 (5163)
T PRK12316        656 NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDP  735 (5163)
T ss_pred             CeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCH
Confidence            35699999999999999999998     33445667899999999999999999988888889999999985      57


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..|.+...                                                  
T Consensus       736 ~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------------------------------  765 (5163)
T PRK12316        736 AKLVELINREGVDTLHFVPSMLQAFLQDED--------------------------------------------------  765 (5163)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhccc--------------------------------------------------
Confidence            889999999999999999999998865100                                                  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccC--
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARR--  261 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~--  261 (467)
                                                 ...++++|.+++||+++++++. ++.+.+ +.++++.||+||++...+...  
T Consensus       766 ---------------------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~  818 (5163)
T PRK12316        766 ---------------------------VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCV  818 (5163)
T ss_pred             ---------------------------cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecc
Confidence                                       0344566999999999999984 454555 789999999999985433322  


Q ss_pred             CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC------CCCeeecccEEEEc
Q 012261          262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------EDGWLNTGDIGWIA  335 (467)
Q Consensus       262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~------~~gw~~TGD~~~~~  335 (467)
                      .......++|.|+++++++|+| +.++++|.|+.|||+|+|++++.||+++|+.|...|.      +++||+|||+|+++
T Consensus       819 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~  897 (5163)
T PRK12316        819 EEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYR  897 (5163)
T ss_pred             cccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEEC
Confidence            2234567899999999999999 5689999999999999999999999999999998874      34599999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHHHHHcc
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~  415 (467)
                      +          ||.++++||+||+||+ +|++|+|.|||++|.+||.|.+++|++.+.+.++|+|+++++          
T Consensus       898 ~----------dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~----------  956 (5163)
T PRK12316        898 A----------DGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESE----------  956 (5163)
T ss_pred             C----------CCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCC----------
Confidence            9          9999999999999998 999999999999999999999999999998889999998643          


Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                            .....++++++++++|+.|     ..|+.|+++++.|.+.|||++
T Consensus       957 ------~~~~~~~l~~~l~~~Lp~y-----~vP~~i~~v~~lP~t~~GKid  996 (5163)
T PRK12316        957 ------GGDWREALKAHLAASLPEY-----MVPAQWLALERLPLTPNGKLD  996 (5163)
T ss_pred             ------CCCCHHHHHHHHHhhCCCc-----cCCCeEEEHhhCCCCCCCChh
Confidence                  2355778999999999988     688899999999999999985

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.7e-41  Score=358.08  Aligned_cols=319  Identities=24%  Similarity=0.350  Sum_probs=263.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh---H----hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI---R----SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~---~----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~  105 (467)
                      .+..|+|||||||.||+|+++|+.   .    .....++++++|+++..+|++|.+++...+.++..|+++++.    ++
T Consensus       178 ~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~  257 (542)
T PRK06018        178 TAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDG  257 (542)
T ss_pred             ceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCH
Confidence            356899999999999999999972   1    123456788999999999999999988777789999999874    57


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.+++++||++.++|+++..+.+......                                               
T Consensus       258 ~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------------------------------  290 (542)
T PRK06018        258 ASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----------------------------------------------  290 (542)
T ss_pred             HHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------------------------------
Confidence            889999999999999999999998876322110                                               


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC-
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  264 (467)
                                                  .+++.+|.+++||+++++++.+.++.+++++++.||+||++.+...+.... 
T Consensus       291 ----------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  342 (542)
T PRK06018        291 ----------------------------LKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPP  342 (542)
T ss_pred             ----------------------------CCcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccccCccc
Confidence                                        123455999999999999996555559999999999999987665442111 


Q ss_pred             ----------CCCCcccccCCCeEEEEEeCCCCcccCCC--CceEEEEeCCCcCcccCCCccccccccCCCCeeecccEE
Q 012261          265 ----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  332 (467)
Q Consensus       265 ----------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g--~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~  332 (467)
                                ...+++|.|.++++++++| ++++.++.+  ..|||+++|++++.|||+.   +...++.+|||+|||++
T Consensus       343 ~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~  418 (542)
T PRK06018        343 FSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVA  418 (542)
T ss_pred             cccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEE
Confidence                      1235789999999999999 567777753  5799999999999999984   23445578999999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          +|.+++.||.+|+|+. +|++|+|.+||+.+.++|+|.+++|+|.+++    ...++|+++++   
T Consensus       419 ~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---  484 (542)
T PRK06018        419 TIDA----------YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPG---  484 (542)
T ss_pred             EEcC----------CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCC---
Confidence            9999          8999999999999995 9999999999999999999999999998764    46677776543   


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+.+++.++++++++.+     ..|+.|.++++.|.+.+||+.
T Consensus       485 -------------~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~iP~t~~GKi~  524 (542)
T PRK06018        485 -------------ETATREEILKYMDGKIAKW-----WMPDDVAFVDAIPHTATGKIL  524 (542)
T ss_pred             -------------CCCCHHHHHHHHHhhCccc-----cCCcEEEEeccCCCCCcchhh
Confidence                         3456788999999988887     688899999999999999974

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.6e-41  Score=426.64  Aligned_cols=320  Identities=17%  Similarity=0.180  Sum_probs=273.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~~  106 (467)
                      .+++|+|||||||.||||+++|+     +......++++++|+++.+.|++|+++....+.+|..|+++++.     ++.
T Consensus      3238 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~ 3317 (3956)
T PRK12467       3238 NLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPE 3317 (3956)
T ss_pred             ceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHH
Confidence            34699999999999999999998     33445667899999999999999999987788889999999985     477


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+...                                                   
T Consensus      3318 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--------------------------------------------------- 3346 (3956)
T PRK12467       3318 ELWQAIHAHRISIACFPPAYLQQFAEDAG--------------------------------------------------- 3346 (3956)
T ss_pred             HHHHHHHHcCCEEEEcCHHHHHHHHhccc---------------------------------------------------
Confidence            89999999999999999999988865210                                                   


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                ...++++|.+++||+++++++. ++.+.+ ++.+++.||+||++..++......
T Consensus      3347 --------------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~ 3400 (3956)
T PRK12467       3347 --------------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGG 3400 (3956)
T ss_pred             --------------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccc
Confidence                                      0345567999999999999984 444455 688999999999987665433211


Q ss_pred             -----CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCC-------eeecccEE
Q 012261          265 -----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-------WLNTGDIG  332 (467)
Q Consensus       265 -----~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~g-------w~~TGD~~  332 (467)
                           ....++|.|+++++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|..+|..++       ||+|||+|
T Consensus      3401 ~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~ 3479 (3956)
T PRK12467       3401 DAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLA 3479 (3956)
T ss_pred             ccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhh
Confidence                 2346899999999999998 6689999999999999999999999999999999986654       59999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC---CCceEEEEecChHHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLM  409 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~~~~~~  409 (467)
                      ++++          ||.++++||+||+||+ +|.+|+|.|||++|.++|+|.+++|++.+   .+.++++|+++.+    
T Consensus      3480 ~~~~----------dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~---- 3544 (3956)
T PRK12467       3480 RYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADP---- 3544 (3956)
T ss_pred             eecC----------CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCC----
Confidence            9999          9999999999999998 99999999999999999999999999865   3578888887642    


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  .....++++++++++|+.|     ..|..|..+++.|.+.|||++
T Consensus      3545 ------------~~~~~~~l~~~l~~~Lp~y-----~vP~~~~~l~~lP~t~~GKid 3584 (3956)
T PRK12467       3545 ------------QGDWRETLRDHLAASLPDY-----MVPAQLLVLAAMPLGPNGKVD 3584 (3956)
T ss_pred             ------------CcccHHHHHHHHhccCChh-----hCCCeeeeeccCCCCCCCccc
Confidence                        2345678999999999999     577899999999999999985

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.1e-42  Score=334.97  Aligned_cols=322  Identities=20%  Similarity=0.283  Sum_probs=281.8

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~  105 (467)
                      -..++++.+.||||+||.+..+|+     ..+....+++++.+++++.+|..|.+.+..  .+..+..|+++|+.   ++
T Consensus       189 ~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp  268 (542)
T COG1021         189 GEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSP  268 (542)
T ss_pred             CceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCH
Confidence            345588999999999999999998     556666788999999999999999998873  46669999999995   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ......|+++++|+...+|.+...|++..+..                                                
T Consensus       269 ~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~------------------------------------------------  300 (542)
T COG1021         269 ELCFPLIERHGVTVTALVPPLASLWLQAAEWE------------------------------------------------  300 (542)
T ss_pred             HHHHHHHHHhccceEEeccHHHHHHHHhhhcc------------------------------------------------
Confidence            88899999999999999999999998854331                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 +.+|++||++-.||+.+++++ ++.-..+|+.+.+.+||.|.-..++.-....
T Consensus       301 ---------------------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~  353 (542)
T COG1021         301 ---------------------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPP  353 (542)
T ss_pred             ---------------------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCch
Confidence                                       267888899999999999999 5555678999999999999875554433322


Q ss_pred             -CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          265 -NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       265 -~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                       --..+-|+|+ |.-+++|+| ++|+++++||+|+|..|||..++|||+.|+.+.++|+.+|+|+|||++++++      
T Consensus       354 E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~------  426 (542)
T COG1021         354 EIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDP------  426 (542)
T ss_pred             HheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecC------
Confidence             2445678888 899999999 7799999999999999999999999999999999999999999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          +|++.+.||.||.|+ .+|++|..+|||+.|..||.|.++++|+.+|+.    .+|+|+++.              
T Consensus       427 ----dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~--------------  487 (542)
T COG1021         427 ----DGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE--------------  487 (542)
T ss_pred             ----CceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecC--------------
Confidence                999999999999999 699999999999999999999999999999864    558888874              


Q ss_pred             cCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ..+...+++.++++ -|..|     +.|.+|.+++..|.+.=|||+
T Consensus       488 ---~~~~~~qlr~~L~~~GlAa~-----K~PDrie~v~~~P~T~VGKId  528 (542)
T COG1021         488 ---PPLRAAQLRRFLRERGLAAF-----KLPDRIEFVDSLPLTAVGKID  528 (542)
T ss_pred             ---CCCCHHHHHHHHHHcchhhh-----cCCcceeecccCCCccccccc
Confidence               33677889999987 58888     688999999999999999986

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.7e-40  Score=349.82  Aligned_cols=326  Identities=20%  Similarity=0.212  Sum_probs=262.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.+..++|||||||.||+|.++|+     .......+++..+|+++..+|++|..+....+.++..|+++++.      +
T Consensus       143 ~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~  222 (503)
T PRK04813        143 DDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTAN  222 (503)
T ss_pred             CCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcC
Confidence            346689999999999999999998     22334457788899999999999999887777789999998874      4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.......                                               
T Consensus       223 ~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-----------------------------------------------  255 (503)
T PRK04813        223 FKQLFETLPQLPINVWVSTPSFADMCLLDPSFN-----------------------------------------------  255 (503)
T ss_pred             HHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-----------------------------------------------
Confidence            678899999999999999999997765421000                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                  ...++.+|.++++|+++++.+. ++.+.+ +..+++.||+||++........
T Consensus       256 ----------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  307 (503)
T PRK04813        256 ----------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEI  307 (503)
T ss_pred             ----------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEe
Confidence                                        0345567999999999999984 555566 7899999999999765443221


Q ss_pred             C-----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-C--CeeecccEEEE
Q 012261          263 T-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-D--GWLNTGDIGWI  334 (467)
Q Consensus       263 ~-----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-~--gw~~TGD~~~~  334 (467)
                      .     .....++|.|.+++++++++ +++.+++.|+.|||+++|++++.|||++++.+...|.. +  +||+|||++++
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~  386 (503)
T PRK04813        308 TDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL  386 (503)
T ss_pred             cccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence            1     23456799999999999999 67899999999999999999999999999999887632 3  59999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~  410 (467)
                       +          +|.+++.||.||+|+. +|++|+|.+||+.+.++|+|.+++|++.++    +.+.++++++++...  
T Consensus       387 -~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--  452 (503)
T PRK04813        387 -E----------DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE--  452 (503)
T ss_pred             -e----------CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc--
Confidence             7          8999999999999997 999999999999999999999999998654    357777777643100  


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ....-.+++.++++++++.+     +.|+.|.++++.|.+.+||+.
T Consensus       453 ----------~~~~~~~~l~~~~~~~l~~~-----~~P~~i~~~~~~P~t~~gKv~  493 (503)
T PRK04813        453 ----------REFELTKAIKKELKERLMEY-----MIPRKFIYRDSLPLTPNGKID  493 (503)
T ss_pred             ----------ccchhHHHHHHHHHhhCccc-----cCCeEEEEeccCCCCCCCCCc
Confidence                      00011235666666666665     688999999999999999985

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-40  Score=352.59  Aligned_cols=326  Identities=20%  Similarity=0.249  Sum_probs=262.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-------h----hhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-------S----LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-------~----~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--  103 (467)
                      ..+.++|||||||.||+|+++|...       .    .........++++++.+|++|.+++...+.++..|+++++.  
T Consensus       141 ~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  220 (502)
T PRK08276        141 AGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK  220 (502)
T ss_pred             cceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC
Confidence            4579999999999999999887511       1    11112234678999999999999988878889999999885  


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..+.+......                            .               
T Consensus       221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------~---------------  257 (502)
T PRK08276        221 FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVR----------------------------A---------------  257 (502)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccC----------------------------C---------------
Confidence             58899999999999999999999988875211100                            0               


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccC
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                    ..+++++|.+++||+++++++.+.+. .++..+++.||+||++++.+...
T Consensus       258 ------------------------------~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~  307 (502)
T PRK08276        258 ------------------------------RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITS  307 (502)
T ss_pred             ------------------------------CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecC
Confidence                                          01345669999999999999965554 56999999999999997555443


Q ss_pred             CC-CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCC
Q 012261          262 PT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  340 (467)
Q Consensus       262 ~~-~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~  340 (467)
                      .. ....+++|.|+ +++++++| +++.+++.|+.|||+++|++++.||+++++.+...+.++|||+|||++++++    
T Consensus       308 ~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----  381 (502)
T PRK08276        308 EDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE----  381 (502)
T ss_pred             ccccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC----
Confidence            32 24568899999 88999998 5688999999999999999999999999999999998789999999999999    


Q ss_pred             CCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccc
Q 012261          341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  416 (467)
Q Consensus       341 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  416 (467)
                            +|.+++.||+||+++. +|++|+|.+||.+|.++|+|.+++|++..++    .+.++|+++.+.          
T Consensus       382 ------~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------  444 (502)
T PRK08276        382 ------DGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA----------  444 (502)
T ss_pred             ------CcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC----------
Confidence                  8999999999999996 9999999999999999999999999998664    577888876431          


Q ss_pred             cccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          417 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       417 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ..++...+++.+.+++++..+     ..|+.|.++++.|.+.+||+.
T Consensus       445 ---~~~~~~~~~i~~~~~~~l~~~-----~~p~~i~~~~~lP~t~~GKi~  486 (502)
T PRK08276        445 ---DAGDALAAELIAWLRGRLAHY-----KCPRSIDFEDELPRTPTGKLY  486 (502)
T ss_pred             ---CCChhhHHHHHHHHHhhccCC-----CCCcEEEEecCCCCCcccchh
Confidence               001111235666666666555     578999999999999999974

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-40  Score=351.79  Aligned_cols=324  Identities=19%  Similarity=0.204  Sum_probs=263.1

Q ss_pred             ceEEEeeeCCCCCCcceehh--hh--------hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---C
Q 012261           38 LFSFVLIDLNTWMPIPKMTN--FQ--------IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  104 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t--~~--------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~  104 (467)
                      .+.++|||||||.||+|+++  |.        .......+++.++++++..+|++|.++....+.++..|+++++.   +
T Consensus       156 ~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~  235 (511)
T PRK13391        156 GTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFD  235 (511)
T ss_pred             ccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCC
Confidence            45899999999999999965  32        12233456778899999999999999987777789999999884   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+......                                              
T Consensus       236 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------------------------  269 (511)
T PRK13391        236 AEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------------------------  269 (511)
T ss_pred             HHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------------------
Confidence            8999999999999999999999988765211100                                              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 -+.+++++|.+++||+++++++.+.++ .+|..+++.||+||++++.......
T Consensus       270 ---------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  322 (511)
T PRK13391        270 ---------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEE  322 (511)
T ss_pred             ---------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCcc
Confidence                                       002345669999999999999955554 5699999999999998765543322


Q ss_pred             -CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC-CeeecccEEEEcCCCCCC
Q 012261          264 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-GWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       264 -~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~-gw~~TGD~~~~~~~~~~~  341 (467)
                       ...++++|.|.++ .++++| +++.+++.|+.|||+++|+ ++.||+++++.+...+..+ +||+|||+|++++     
T Consensus       323 ~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~-----  394 (511)
T PRK13391        323 WLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE-----  394 (511)
T ss_pred             ccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECC-----
Confidence             2456899999999 688988 6689999999999999999 8899999999998887654 9999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||.||+++. +|++|+|.+||++|.+||.|.+++|++.++..    ..+++++..+.           
T Consensus       395 -----~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~-----------  457 (511)
T PRK13391        395 -----DGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV-----------  457 (511)
T ss_pred             -----CccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC-----------
Confidence                 9999999999999996 99999999999999999999999999986543    55667665321           


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        .......++++++++++++.+     ..|+.|.++++.|.+.+||+.
T Consensus       458 --~~~~~~~~~l~~~~~~~l~~~-----~~P~~i~~~~~~P~t~~gKv~  499 (511)
T PRK13391        458 --DPGPALAAELIAFCRQRLSRQ-----KCPRSIDFEDELPRLPTGKLY  499 (511)
T ss_pred             --CcccchHHHHHHHHHhhcccC-----cCCcEEEEeecCCCCCcccee
Confidence              001123467888888888777     688899999999999999974

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-40  Score=354.59  Aligned_cols=318  Identities=18%  Similarity=0.267  Sum_probs=250.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~---~~~  106 (467)
                      -.+++++|||||||.||+|+++|.     .......++++++|+++..+|++|.+++...+. ++..|+++++.   ++.
T Consensus       150 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  229 (540)
T PRK13388        150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSAS  229 (540)
T ss_pred             CCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHH
Confidence            456799999999999999999997     233456678999999999999999998876554 58999999874   588


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++..+|+.+..+......     +.                                           
T Consensus       230 ~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~-----~~-------------------------------------------  261 (540)
T PRK13388        230 GFLDDVRRYGATYFNYVGKPLAYILATPER-----PD-------------------------------------------  261 (540)
T ss_pred             HHHHHHHHhCCeEEEehHHHHHHHHhCCCC-----cc-------------------------------------------
Confidence            899999999999999999998777541000     00                                           


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCceeeccccccccccccccCCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN  265 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  265 (467)
                                                 .....++. .+|| +++++. .++.+.++.++++.||+||++.+....+  ..
T Consensus       262 ---------------------------~~~~~l~~-~~G~-~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~  310 (540)
T PRK13388        262 ---------------------------DADNPLRV-AFGN-EASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP--GT  310 (540)
T ss_pred             ---------------------------ccccceEE-EECC-CCCHHHHHHHHHHhCCceecccccccccceeecCC--CC
Confidence                                       00112353 3444 555554 6667778999999999999987665432  23


Q ss_pred             CCCcccccCCCeEEE-----------EEeCCCCccc-CCCCceEEEEe-CCCcCcccCCCccccccccCCCCeeecccEE
Q 012261          266 VLGSVGHPINHTEIK-----------IVDAETNEVL-PAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIG  332 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~-----------i~d~~~~~~~-~~g~~GEL~v~-~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~  332 (467)
                      ..+++|.|.+++++.           ++| ++|+.+ ++++.|||+++ |++++.||+++|+.+.+.| .+|||+|||+|
T Consensus       311 ~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~  388 (540)
T PRK13388        311 PPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLA  388 (540)
T ss_pred             CCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceE
Confidence            468999999996542           222 233333 34678999998 9999999999999998888 58999999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          +|.+++.||+||+|++ +|++|+|.+||++|.++|+|.+|+|+|.+++    .+.+++++.++   
T Consensus       389 ~~~~----------dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~---  454 (540)
T PRK13388        389 YRDA----------DGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDG---  454 (540)
T ss_pred             EEcC----------CCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCC---
Confidence            9999          9999999999999997 9999999999999999999999999998765    35566776543   


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHH--HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+.+++.++++.+  |..+     ..|+.++++++.|.+.+||+.
T Consensus       455 -------------~~~~~~~l~~~l~~~~~l~~~-----~~P~~~~~v~~iP~t~~GKv~  496 (540)
T PRK13388        455 -------------ATFDPDAFAAFLAAQPDLGTK-----AWPRYVRIAADLPSTATNKVL  496 (540)
T ss_pred             -------------CcCCHHHHHHHHHhhccCCcc-----cCCcEEEEeccCCCCCcceee
Confidence                         335667787777653  5555     578899999999999999974

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.5e-40  Score=353.59  Aligned_cols=323  Identities=24%  Similarity=0.383  Sum_probs=263.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-H---hhhccc------CCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-R---SLYDIV------PAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-~---~~~~~~------~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~--  103 (467)
                      .+..++|||||||.||+|+++|.. .   .....+      .....+++++.+|++|.+++... +.++..|+++++.  
T Consensus       193 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~  272 (541)
T TIGR03205       193 DVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQR  272 (541)
T ss_pred             CeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCC
Confidence            455899999999999999999972 1   111111      22345789999999999987765 4458899988875  


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..+.+..        .+.                                     
T Consensus       273 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------~~~-------------------------------------  307 (541)
T TIGR03205       273 FDVAAVFRDIEEKRATVFPGVPTMWIALANDP--------SLE-------------------------------------  307 (541)
T ss_pred             CCHHHHHHHHHHcCCeEeechHHHHHHHHhCc--------ccc-------------------------------------
Confidence             6899999999999999999999998876410        000                                     


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccC
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                    ...+..+|.+++||+++++++.++++ .++.++++.||+||++...+.+.
T Consensus       308 ------------------------------~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (541)
T TIGR03205       308 ------------------------------KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHP  357 (541)
T ss_pred             ------------------------------ccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCC
Confidence                                          02234559999999999999966554 56999999999999987766554


Q ss_pred             CC-CCCCCcccccCCCeEEEEEe-CCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC
Q 012261          262 PT-CNVLGSVGHPINHTEIKIVD-AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  339 (467)
Q Consensus       262 ~~-~~~~g~vG~p~~~~~v~i~d-~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~  339 (467)
                      .. ...++++|.|.+++.+++.+ .+.+++++.|+.|||+++|++++.|||++++.+...|. ++||+|||++++++   
T Consensus       358 ~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~---  433 (541)
T TIGR03205       358 PEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDT---  433 (541)
T ss_pred             CCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEEcC---
Confidence            32 23567899999999998875 36678999999999999999999999999999988884 78999999999998   


Q ss_pred             CCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcc
Q 012261          340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       340 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  415 (467)
                             +|.+++.||.||+|+. +|++|+|.+||+.+.++|+|.+++|+|.+++    .+.++++++++.         
T Consensus       434 -------~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------  496 (541)
T TIGR03205       434 -------DGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGA---------  496 (541)
T ss_pred             -------CceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCC---------
Confidence                   9999999999999996 9999999999999999999999999998654    456777776431         


Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                            ...+.+++.++++++|..+     .+++.|+++++.|.+.+||+.
T Consensus       497 ------~~~~~~~l~~~~~~~l~~~-----~~P~~i~~~~~iP~t~~gK~~  536 (541)
T TIGR03205       497 ------KPFSLDELRAFLAGKLGKH-----ELPVAVEFVDELPRTPVGKLS  536 (541)
T ss_pred             ------CcCCHHHHHHHHHhhcccc-----cCCcEEEEeccCCCCccccee
Confidence                  2346678999999988888     688899999999999999974

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-40  Score=354.89  Aligned_cols=321  Identities=22%  Similarity=0.352  Sum_probs=260.4

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH--hh---hcc----cCCC---CCCEEEEECChhHHHHHHHh-HHHhhcCceEEec
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR--SL---YDI----VPAE---NGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~--~~---~~~----~~~~---~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~  103 (467)
                      .+++|+|||||||.||+|+++|...  ..   ...    +...   ..+.+++.+|++|.+++... +.++..|++.++.
T Consensus       205 ~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~  284 (557)
T PRK07059        205 DVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILI  284 (557)
T ss_pred             ceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEe
Confidence            4569999999999999999999711  11   111    1111   23577889999999987644 4557778776663


Q ss_pred             ----CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261          104 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  179 (467)
Q Consensus       104 ----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (467)
                          ++..+++.++++++|.+.++|.++..+......                              .            
T Consensus       285 ~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------~------------  322 (557)
T PRK07059        285 PNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDF------------------------------D------------  322 (557)
T ss_pred             cCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCc------------------------------C------------
Confidence                467889999999999999999999888652100                              0            


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeecccccccccccc
Q 012261          180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIA  258 (467)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~  258 (467)
                                                       ...+..+|.++.||+++++.+. ++.+.+++++++.||+||++.+..
T Consensus       323 ---------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  369 (557)
T PRK07059        323 ---------------------------------KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVAT  369 (557)
T ss_pred             ---------------------------------cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhh
Confidence                                             0123345999999999999884 555567999999999999998766


Q ss_pred             ccCCCC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCC
Q 012261          259 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  337 (467)
Q Consensus       259 ~~~~~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~  337 (467)
                      .+.... ..++++|.|+++++++++| +.+.+++.|+.|||+++|++++.||+++++.+...+..+|||+|||++++++ 
T Consensus       370 ~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~-  447 (557)
T PRK07059        370 CNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE-  447 (557)
T ss_pred             cCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcC-
Confidence            554322 3468999999999999998 5689999999999999999999999999999998888899999999999999 


Q ss_pred             CCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHH
Q 012261          338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  413 (467)
Q Consensus       338 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  413 (467)
                               +|.+++.||++|+|+. +|++|+|.+||++|.++|+|.+++|+|.++.    .+.++++...         
T Consensus       448 ---------~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~---------  508 (557)
T PRK07059        448 ---------RGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD---------  508 (557)
T ss_pred             ---------CCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC---------
Confidence                     9999999999999997 8999999999999999999999999997654    3556655432         


Q ss_pred             ccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          414 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                              ...+.+++.+++++.+..+     .++..|.++++.|.+.+||+.
T Consensus       509 --------~~~~~~~l~~~~~~~l~~~-----~~P~~i~~v~~~P~t~~GK~~  548 (557)
T PRK07059        509 --------PALTEEDVKAFCKERLTNY-----KRPKFVEFRTELPKTNVGKIL  548 (557)
T ss_pred             --------CCCCHHHHHHHHHHhcccc-----cCCcEEEEeccCCCCccccee
Confidence                    2355678889999888888     578899999999999999974

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.1e-40  Score=356.51  Aligned_cols=321  Identities=23%  Similarity=0.342  Sum_probs=260.4

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccC----CCCC-CEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVP----AENG-DKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~----~~~~-d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~--  103 (467)
                      .++.++|||||||.||+|.++|..     ......++    +.++ ++++..+|++|++++... ...+..|++.++.  
T Consensus       209 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  288 (560)
T PRK08751        209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISN  288 (560)
T ss_pred             cEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecC
Confidence            355899999999999999999971     11112222    3444 567888999999998653 4456667666552  


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|.++..+.+...        .                      .              
T Consensus       289 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------~----------------------~--------------  324 (560)
T PRK08751        289 PRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--------F----------------------D--------------  324 (560)
T ss_pred             cCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC--------c----------------------C--------------
Confidence              57889999999999999999999988865100        0                      0              


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeecccccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                     +.+++++|.+++||+++++++.+. .+.+|+.+++.||+||+++..+.+
T Consensus       325 -------------------------------~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  373 (560)
T PRK08751        325 -------------------------------QIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACIN  373 (560)
T ss_pred             -------------------------------CcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecc
Confidence                                           012334599999999999998544 445699999999999998776655


Q ss_pred             CCC-CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC
Q 012261          261 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  339 (467)
Q Consensus       261 ~~~-~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~  339 (467)
                      ... ....+++|.|.++++++++| +++.+++.|+.|||+++|+.++.||+++++.+...++.+|||+|||+|++++   
T Consensus       374 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~---  449 (560)
T PRK08751        374 PLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDE---  449 (560)
T ss_pred             cccccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcC---
Confidence            432 23567899999999999999 6789999999999999999999999999999998888899999999999999   


Q ss_pred             CCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcc
Q 012261          340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS  415 (467)
Q Consensus       340 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~  415 (467)
                             +|.+++.||.+|+|++ +|++|+|.+||+.|..+|+|.+++|+|.+++.    ..++++.+.           
T Consensus       450 -------~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~-----------  510 (560)
T PRK08751        450 -------QGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKD-----------  510 (560)
T ss_pred             -------CceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCC-----------
Confidence                   9999999999999997 89999999999999999999999999987643    344444331           


Q ss_pred             ccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          416 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       416 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                            ...+.+++.+.+++++..+     ..|+.|.++++.|.+.+||+.
T Consensus       511 ------~~~~~~~l~~~~~~~l~~~-----~~P~~v~~v~~lP~t~~gKv~  550 (560)
T PRK08751        511 ------PALTAEDVKAHARANLTGY-----KQPRIIEFRKELPKTNVGKIL  550 (560)
T ss_pred             ------CCCCHHHHHHHHHHhhhhc-----cCCeEEEEhhhCCCCcccccc
Confidence                  3356778999999999888     688899999999999999974

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.3e-40  Score=339.85  Aligned_cols=310  Identities=23%  Similarity=0.320  Sum_probs=258.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecC-HHHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-VRNLKD  110 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~-~~~l~~  110 (467)
                      .+.+++|||||||.||+|+++|+     +......++++++|+++..+|++|++++...+.++..|+++++.+ ...+++
T Consensus       112 ~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~  191 (436)
T TIGR01923       112 QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLE  191 (436)
T ss_pred             ceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHHHHHH
Confidence            46699999999999999999997     344556678999999999999999999877777799999999864 458899


Q ss_pred             HHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHH
Q 012261          111 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  190 (467)
Q Consensus       111 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (467)
                      .++++++|++.++|+++..+.+...                                                       
T Consensus       192 ~l~~~~~t~~~~~P~~l~~l~~~~~-------------------------------------------------------  216 (436)
T TIGR01923       192 MIANERVTHISLVPTQLNRLLDEGG-------------------------------------------------------  216 (436)
T ss_pred             HHHHhCCeEEEeHHHHHHHHHhCcC-------------------------------------------------------
Confidence            9999999999999999988866210                                                       


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC-CCCCc
Q 012261          191 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGS  269 (467)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~g~  269 (467)
                                             .. ..+|.+++||+++++++.++++.+|+++++.||+||+++..+...... ....+
T Consensus       217 -----------------------~~-~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  272 (436)
T TIGR01923       217 -----------------------HN-ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPD  272 (436)
T ss_pred             -----------------------CC-CceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccccccccC
Confidence                                   00 235999999999999997777778999999999999987655443322 22234


Q ss_pred             ccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCce
Q 012261          270 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGV  349 (467)
Q Consensus       270 vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~  349 (467)
                      +|.|++++++++.+.+.      ++.|||+++++.++.||+++++.+...+ .+|||+|||++++++          ||.
T Consensus       273 ~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~----------dg~  335 (436)
T TIGR01923       273 VGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDG----------EGF  335 (436)
T ss_pred             CCccCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcC----------CCC
Confidence            89999999999944222      2689999999999999999888776655 589999999999999          899


Q ss_pred             EEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcccCC
Q 012261          350 LVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELS  425 (467)
Q Consensus       350 l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  425 (467)
                      +++.||.+|+++. +|++|+|.+||+.|.++|.|.+++|++.++.    .+.+++++++                  +.+
T Consensus       336 ~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~------------------~~~  396 (436)
T TIGR01923       336 LYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES------------------DIS  396 (436)
T ss_pred             EEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC------------------CCC
Confidence            9999999999996 9999999999999999999999999998664    3456666652                  256


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          426 KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       426 ~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      .+++.+++++.++.+     ..+..|.++++.|.+.+||+.
T Consensus       397 ~~~l~~~l~~~l~~~-----~~p~~i~~~~~iP~t~~GK~~  432 (436)
T TIGR01923       397 QAKLIAYLTEKLAKY-----KVPIAFEKLDELPYNASGKIL  432 (436)
T ss_pred             HHHHHHHHHHhhhCC-----CCCeEEEEecCCCCCCCCcee
Confidence            678999999888888     577899999999999999974

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.4e-40  Score=344.85  Aligned_cols=299  Identities=24%  Similarity=0.365  Sum_probs=251.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecCHHHHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDD  111 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~~~~l~~~  111 (467)
                      .+++++|||||||.||+|+++|+     +......++..++|+++..+|++|.+++...+.++..|+++++.+...+++.
T Consensus       136 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~~~~  215 (458)
T PRK09029        136 RLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQPLEQA  215 (458)
T ss_pred             CeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChHHHHHH
Confidence            34699999999999999999998     3344566788899999999999999998766777999999999877788888


Q ss_pred             HhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHHH
Q 012261          112 LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWAR  191 (467)
Q Consensus       112 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (467)
                      ++  ++|.+..+|+++..+.....                                                        
T Consensus       216 i~--~~t~~~~~P~~~~~l~~~~~--------------------------------------------------------  237 (458)
T PRK09029        216 LA--GCTHASLVPTQLWRLLDNRS--------------------------------------------------------  237 (458)
T ss_pred             Hh--hceeeecChHHHHHHHhccc--------------------------------------------------------
Confidence            74  78999999999987765210                                                        


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCCCCCCccc
Q 012261          192 IICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVG  271 (467)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG  271 (467)
                                             ....+|.+++||+++++.+.+.++.+|.++++.||+||++...+.....  ...++|
T Consensus       238 -----------------------~~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~--~~~~~G  292 (458)
T PRK09029        238 -----------------------EPLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRAD--GLAGVG  292 (458)
T ss_pred             -----------------------cCCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCCC--CCCCCC
Confidence                                   0113499999999999999777777799999999999998765543322  235699


Q ss_pred             ccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEE
Q 012261          272 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLV  351 (467)
Q Consensus       272 ~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~  351 (467)
                      .|++++++++++            |||+++|++++.||+++++.+.... .+|||+|||+|+++           +|.++
T Consensus       293 ~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-----------~g~l~  348 (458)
T PRK09029        293 SPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-----------NGELT  348 (458)
T ss_pred             CCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-----------CCEEE
Confidence            999999999975            8999999999999999988876544 68999999999998           48999


Q ss_pred             EEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcccCCHH
Q 012261          352 LEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKE  427 (467)
Q Consensus       352 i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (467)
                      +.||+||+|++ +|++|+|.|||++|.++|+|.+++|++.+++    .+.++|+++                  ...+.+
T Consensus       349 ~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~------------------~~~~~~  409 (458)
T PRK09029        349 ILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESD------------------SEAAVV  409 (458)
T ss_pred             Eecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcC------------------cccCHH
Confidence            99999999996 8999999999999999999999999998765    356777664                  224667


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          428 KTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       428 ~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      +++++++++|+.|     ++|.+|.++++.|.+.+||+.
T Consensus       410 ~l~~~~~~~l~~~-----~~P~~~~~~~~~p~t~~gKi~  443 (458)
T PRK09029        410 NLAEWLQDKLARF-----QQPVAYYLLPPELKNGGIKIS  443 (458)
T ss_pred             HHHHHHHhhchhc-----cCCeEEEEecccccCcCCCcC
Confidence            8999999999998     688899999988999999975

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=4.1e-40  Score=382.00  Aligned_cols=315  Identities=18%  Similarity=0.248  Sum_probs=256.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec----CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~----~~  105 (467)
                      -.+++|+|||||||.||+|+++|+     .......++.+++|++++.+|++|.+++.. .+.++..|+++++.    +.
T Consensus       793 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~  872 (1140)
T PRK06814        793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHY  872 (1140)
T ss_pred             CCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccH
Confidence            456799999999999999999998     233445678889999999999999999854 45669999999885    34


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      +.+.+.++++++|++.++|+++..+.+...                                                  
T Consensus       873 ~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------------------------------------  902 (1140)
T PRK06814        873 RIIPELIYDTNATILFGTDTFLNGYARYAH--------------------------------------------------  902 (1140)
T ss_pred             HHHHHHHHhcCCEEEEecHHHHHHHHhhcc--------------------------------------------------
Confidence            567889999999999999999987765200                                                  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ..+++++|.+++||+++++++.+ +.+.++.++++.||+||+++....+.+..
T Consensus       903 ---------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  955 (1140)
T PRK06814        903 ---------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH  955 (1140)
T ss_pred             ---------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC
Confidence                                       02344569999999999999854 45567999999999999988766655545


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|.|++++++.+.+ +    .++.|||+++|++++.||+++++.......++|||+|||++++++        
T Consensus       956 ~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~-------- 1022 (1140)
T PRK06814        956 NKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDE-------- 1022 (1140)
T ss_pred             CCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECC--------
Confidence            567899999999999998733 1    367899999999999999987654332223589999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEE---EEecChHHHHHHHHHccccccCc
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA---IIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a---~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                        ||.+++.||.||+|+. +|++|+|.|||+.|.+||.+.+++|++.+++..+.   .++..                  
T Consensus      1023 --dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~------------------ 1081 (1140)
T PRK06814       1023 --EGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTA------------------ 1081 (1140)
T ss_pred             --CCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcC------------------
Confidence              9999999999999997 99999999999999999999999999987765431   12211                  


Q ss_pred             ccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      .+.+.+++.+++++. ++++     ..|++|.++++.|.+.+||++
T Consensus      1082 ~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~ 1122 (1140)
T PRK06814       1082 SDATRAAFLAHAKAAGASEL-----MVPAEIITIDEIPLLGTGKID 1122 (1140)
T ss_pred             CCcCHHHHHHHHHHcCCCcc-----cCCcEEEEecCcCCCCCCCCc
Confidence            335567788888764 6666     678999999999999999985

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-40  Score=354.51  Aligned_cols=321  Identities=23%  Similarity=0.262  Sum_probs=258.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh--H----hhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI--R----SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~--~----~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~~  106 (467)
                      .++.|+|||||||.||+|+++|..  .    ........+++|++++++|++|+++... .+.++..|+++++.   ++.
T Consensus       210 ~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~  289 (567)
T PRK06178        210 ALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAV  289 (567)
T ss_pred             CeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence            456999999999999999999971  1    1112356788999999999999999865 45669999999984   588


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|..+..+.+....                              .+                  
T Consensus       290 ~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~------------------------------~~------------------  321 (567)
T PRK06178        290 AFMAAVERYRVTRTVMLVDNAVELMDHPRF------------------------------AE------------------  321 (567)
T ss_pred             HHHHHHHHhCCeEEeccHHHHHHHHhCCCC------------------------------CC------------------
Confidence            999999999999999999998877652100                              00                  


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEE--EecCCchHHHHHHH-HHhCCceee-ccccccccccccccC-
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV--SGGGSLPMHIDLFY-EAIGVKVQV-GYGLTESSPVIAARR-  261 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~--~gG~~l~~~~~~~~-~~~g~~v~~-~YG~TE~~~~~~~~~-  261 (467)
                                                 ..+..++.+.  ++++.+++++.+.+ +.+|..++. .||+||+++...... 
T Consensus       322 ---------------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~  374 (567)
T PRK06178        322 ---------------------------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAG  374 (567)
T ss_pred             ---------------------------CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccc
Confidence                                       1122235443  44688999885554 466877665 799999876543321 


Q ss_pred             --CC----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261          262 --PT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       262 --~~----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~  335 (467)
                        ..    ...++++|.|+++++++++|++++.+++.|+.|||+++|++++.||+++++.+...+ .+|||+|||+++++
T Consensus       375 ~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~  453 (567)
T PRK06178        375 FQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKID  453 (567)
T ss_pred             cccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEe
Confidence              11    134578999999999999998889999999999999999999999999999998887 58999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          +|.+++.||++|+|+. +|++|+|.+||+.+.++|+|.+++|+|.+++    .+.++|+++++      
T Consensus       454 ~----------~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~------  516 (567)
T PRK06178        454 E----------QGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG------  516 (567)
T ss_pred             c----------CCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC------
Confidence            8          8999999999999997 8999999999999999999999999997654    46677877643      


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ...+.+++.+++++++..+     ..++ +.++++.|.+.+||+.
T Consensus       517 ----------~~~~~~~l~~~~~~~l~~~-----~~p~-i~~v~~iP~t~~GKv~  555 (567)
T PRK06178        517 ----------ADLTAAALQAWCRENMAVY-----KVPE-IRIVDALPMTATGKVR  555 (567)
T ss_pred             ----------CcCCHHHHHHHHHhcCccc-----CCce-EEEeccCCCCCcccee
Confidence                      3356778899999888777     4664 8889999999999974

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=4.9e-40  Score=354.77  Aligned_cols=326  Identities=20%  Similarity=0.295  Sum_probs=256.9

Q ss_pred             ceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHH-hhcCceEEec--CHHHHH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT--AVRNLK  109 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~-l~~G~~~v~~--~~~~l~  109 (467)
                      +.+|+|||||||.||+|+++|+.     ......++++++|++++.+|++|.+++...+.. +..|..+++.  ++..++
T Consensus       197 ~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  276 (567)
T PLN02479        197 SIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIY  276 (567)
T ss_pred             ceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHH
Confidence            45799999999999999999972     222345678889999999999999998765544 5666666553  689999


Q ss_pred             HHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHH
Q 012261          110 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  189 (467)
Q Consensus       110 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (467)
                      +.++++++|++.++|+++..+.+.....                              +                     
T Consensus       277 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------~---------------------  305 (567)
T PLN02479        277 SAIANYGVTHFCAAPVVLNTIVNAPKSE------------------------------T---------------------  305 (567)
T ss_pred             HHHHHcCCeEEEecHHHHHHHHhhhhhc------------------------------c---------------------
Confidence            9999999999999999999887631110                              0                     


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccC--CC----
Q 012261          190 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR--PT----  263 (467)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~--~~----  263 (467)
                                             ...+++++.++++|+++++++.+.++..+.++++.||+||+++....+.  +.    
T Consensus       306 -----------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  362 (567)
T PLN02479        306 -----------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSL  362 (567)
T ss_pred             -----------------------cccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceecccccccc
Confidence                                   0134456889999999999996666666899999999999965443321  00    


Q ss_pred             ----C-CCCCcccccCCCeE-EEEEeCCCCcccCCC--CceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261          264 ----C-NVLGSVGHPINHTE-IKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       264 ----~-~~~g~vG~p~~~~~-v~i~d~~~~~~~~~g--~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~  335 (467)
                          . ....+.|.+.++++ ++++|++++.+++.+  +.|||+++|++++.|||++++.+...| .+|||+|||+++++
T Consensus       363 ~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~  441 (567)
T PLN02479        363 PPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKH  441 (567)
T ss_pred             CcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEc
Confidence                0 01235677888875 889887778888764  579999999999999999999999998 58999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          +|.+++.||.||+|+. +|++|+|.+||.+|..||.|.+++|+|.+++    .+++++++.++..    
T Consensus       442 ~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----  506 (567)
T PLN02479        442 P----------DGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD----  506 (567)
T ss_pred             C----------CccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccc----
Confidence            9          8999999999999996 9999999999999999999999999998764    5778888765410    


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                             .+......+++.++++++|+.+     ..|+.+.+ ++.+.+.+||+.
T Consensus       507 -------~~~~~~~~~~l~~~~~~~l~~~-----~~P~~~~~-~~iP~t~~gKv~  548 (567)
T PLN02479        507 -------KSDEAALAEDIMKFCRERLPAY-----WVPKSVVF-GPLPKTATGKIQ  548 (567)
T ss_pred             -------ccchhhhHHHHHHHHHhhcccc-----cCCceEEe-ccCCCCCccCee
Confidence                   0001234567788888888777     57777776 679999999873

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-40  Score=349.37  Aligned_cols=330  Identities=16%  Similarity=0.176  Sum_probs=280.0

Q ss_pred             CCCCCceEEEeeeCCCCCCcceehhhh------hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261           33 RRDLPLFSFVLIDLNTWMPIPKMTNFQ------IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  103 (467)
Q Consensus        33 ~~~~~~~~i~~TSGTTG~PK~v~~t~~------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~--  103 (467)
                      ..-..|..|+|||||||.||++.+++.      +......++++++|++.+..-+.|+.+-... +.+|.+|++++++  
T Consensus       236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g  315 (626)
T KOG1175|consen  236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG  315 (626)
T ss_pred             cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence            334455699999999999999999997      4566677899999999999999999998775 5579999999995  


Q ss_pred             ---CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchh
Q 012261          104 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  180 (467)
Q Consensus       104 ---~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (467)
                         ++..+++.+.++++|+++..|+.++.|.+..++-+                                          
T Consensus       316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~------------------------------------------  353 (626)
T KOG1175|consen  316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV------------------------------------------  353 (626)
T ss_pred             CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc------------------------------------------
Confidence               57899999999999999999999998866322211                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCC-ceeecccccccccccc
Q 012261          181 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGV-KVQVGYGLTESSPVIA  258 (467)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~-~v~~~YG~TE~~~~~~  258 (467)
                                                     ...+.++||.+.++|+++.++..+++. .++. +|++.||+||+|+.+.
T Consensus       354 -------------------------------~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i  402 (626)
T KOG1175|consen  354 -------------------------------TSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICI  402 (626)
T ss_pred             -------------------------------cccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceee
Confidence                                           012334569999999999999966655 6677 6999999999999888


Q ss_pred             ccCCCC--CCCCcccccCCCeEEEEEeCCCCcccCCC-CceEEEEeCC---CcCcccCCCccccccccCC--CCeeeccc
Q 012261          259 ARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAG-SKGIVKVRGS---QVMQGYFKNPSATKQALDE--DGWLNTGD  330 (467)
Q Consensus       259 ~~~~~~--~~~g~vG~p~~~~~v~i~d~~~~~~~~~g-~~GEL~v~~~---~~~~gY~~~~~~t~~~~~~--~gw~~TGD  330 (467)
                      .+....  .++|+.+.|++++.+.|.| +.|+.++.+ +.|+|+++.+   +++++||+|++....+...  .|+|.|||
T Consensus       403 ~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD  481 (626)
T KOG1175|consen  403 TPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGD  481 (626)
T ss_pred             eccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecC
Confidence            887666  6899999999999999999 578888887 8999999885   7799999999966666545  89999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHH
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  406 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  406 (467)
                      .+++|+          ||++|+.||+||+||+ +|+++++.|||+++..||.|.|++|||.+++    .+.|+|+++++ 
T Consensus       482 ~~~rd~----------dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-  549 (626)
T KOG1175|consen  482 GGRRDE----------DGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-  549 (626)
T ss_pred             ceEEcC----------CceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-
Confidence            999998          9999999999999997 8999999999999999999999999999876    46699999864 


Q ss_pred             HHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCcc
Q 012261          407 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  465 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~  465 (467)
                                      .-+.++|.+.++..+++-..+++ .|+.|.++++.|.|-+||+
T Consensus       550 ----------------~~~~~~L~kel~~~VR~~igp~a-~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  550 ----------------SHDPEQLTKELVKHVRSVIGPYA-VPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             ----------------CCChHHHHHHHHHHHHhhcCccc-ccceeEecCCCCccccchh
Confidence                            23456677777777766666665 9999999999999999996

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.9e-40  Score=416.09  Aligned_cols=326  Identities=17%  Similarity=0.178  Sum_probs=273.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.+++|+|||||||.||||+++|+     +......+++.++|+++.+.|++|.++....+.+|..|+++++.      +
T Consensus       656 ~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~  735 (3956)
T PRK12467        656 DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARD  735 (3956)
T ss_pred             CCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCccccCC
Confidence            345699999999999999999998     33445567899999999999999999988888889999999985      4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+....                                                
T Consensus       736 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------------------------  767 (3956)
T PRK12467        736 AEAFAALMADQGVTVLKIVPSHLQALLQASRV------------------------------------------------  767 (3956)
T ss_pred             HHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc------------------------------------------------
Confidence            77899999999999999999999988762111                                                


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh-CCceeeccccccccccccccCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   .....+|.+++||+++++++.+.+ +.+ ++++++.||+||++..++....
T Consensus       768 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~  818 (3956)
T PRK12467        768 -----------------------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYEL  818 (3956)
T ss_pred             -----------------------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEec
Confidence                                         122334999999999999985544 444 6899999999999876655433


Q ss_pred             CCC----CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-------CCeeecccE
Q 012261          263 TCN----VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLNTGDI  331 (467)
Q Consensus       263 ~~~----~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-------~gw~~TGD~  331 (467)
                      ...    ...++|.|+++++++++| +.++++|.|+.|||+|+|++++.||+++|+.|...|..       ++||+|||+
T Consensus       819 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl  897 (3956)
T PRK12467        819 SDEERDFGNVPIGQPLANLGLYILD-HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDL  897 (3956)
T ss_pred             ccccccCCCCcccCCcCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCce
Confidence            221    236799999999999999 56899999999999999999999999999999988843       349999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC---CceEEEEecChHHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVL  408 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~~~~~  408 (467)
                      |++++          ||.++++||+||+||+ +|++|+|.|||+.|.++|+|.+++|++.++   +.+++++++....  
T Consensus       898 ~~~~~----------dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~--  964 (3956)
T PRK12467        898 ARYRA----------DGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVA--  964 (3956)
T ss_pred             eEEcC----------CCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccc--
Confidence            99999          9999999999999998 999999999999999999999999998543   3688888865221  


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                               .........+++.+++++.|+.|     ..|..|.++++.|.+.|||++
T Consensus       965 ---------~~~~~~~~~~~l~~~l~~~Lp~y-----~vP~~~~~l~~lP~t~~GKid 1008 (3956)
T PRK12467        965 ---------DGAEHQATRDELKAQLRQVLPDY-----MVPAHLLLLDSLPLTPNGKLD 1008 (3956)
T ss_pred             ---------cccccccCHHHHHHHHHhhCchh-----cCCceEeeecccCCCCCCCcC
Confidence                     00113345778999999999998     578899999999999999985

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-39  Score=332.16  Aligned_cols=295  Identities=23%  Similarity=0.256  Sum_probs=238.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEe------cCH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY------TAV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~------~~~  105 (467)
                      .+++++|||||||.||+|+++|..     ......  +...++++..+|++|++++...+.++..|+++++      +++
T Consensus        36 d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~~~~  113 (358)
T PRK07824         36 DVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAGFDP  113 (358)
T ss_pred             CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCCcCH
Confidence            467999999999999999999981     112222  3355789999999999998877778889998877      258


Q ss_pred             HHHHHHHhhcC--CcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          106 RNLKDDLQRYQ--PHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       106 ~~l~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ..+++.+++++  .++...+|..+..+.....                                                
T Consensus       114 ~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~------------------------------------------------  145 (358)
T PRK07824        114 TALPRAVAELGGGRRYTSLVPMQLAKALDDPA------------------------------------------------  145 (358)
T ss_pred             HHHHHHHHHhCCCceEEEecHHHHHHHHhCcc------------------------------------------------
Confidence            88999999998  4566678877765543100                                                


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ....+.++|.+++||+++++++.+.+..+++++++.||+||+++.+      
T Consensus       146 ----------------------------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~------  191 (358)
T PRK07824        146 ----------------------------ATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGC------  191 (358)
T ss_pred             ----------------------------ccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCc------
Confidence                                        0023456699999999999999777677799999999999987532      


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                          ...|.|.+++++++.+            |||+++|+.++.||+++++.+  .+..+|||+|||+|++ .       
T Consensus       192 ----~~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~-------  245 (358)
T PRK07824        192 ----VYDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-D-------  245 (358)
T ss_pred             ----CcCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-e-------
Confidence                1358899999999832            899999999999999988754  4556889999999999 6       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.||+|++ +|++|+|.+||+.|.+||+|.+++|+|.+++.    +.++++.+.+              
T Consensus       246 ---~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~--------------  307 (358)
T PRK07824        246 ---DGVLTVLGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG--------------  307 (358)
T ss_pred             ---CCEEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC--------------
Confidence               8999999999999997 99999999999999999999999999987653    4455655422              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        .....+++++++++.++.+     ..|+.|.++++.+.+.+||+.
T Consensus       308 --~~~~~~~i~~~~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  347 (358)
T PRK07824        308 --PAPTLEALRAHVARTLDRT-----AAPRELHVVDELPRRGIGKVD  347 (358)
T ss_pred             --CCcCHHHHHHHHHhhCccc-----cCCCEEEEecCCCCCCCcccc
Confidence              3456778999999988888     578899999999999999984

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.5e-40  Score=420.94  Aligned_cols=319  Identities=19%  Similarity=0.211  Sum_probs=276.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~  105 (467)
                      .+++|+|||||||.||||+++|.     +......++++++|+++.+.|++|..+....+.+|..|+++++.      ++
T Consensus      3197 ~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~ 3276 (5163)
T PRK12316       3197 NLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDP 3276 (5163)
T ss_pred             CeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCH
Confidence            35699999999999999999998     33445667899999999999999999888888889999999995      46


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+.+.+++.++|++..+|+.+..+.+....                                                 
T Consensus      3277 ~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~------------------------------------------------- 3307 (5163)
T PRK12316       3277 ALLVELINSEGVDVLHAYPSMLQAFLEEEDA------------------------------------------------- 3307 (5163)
T ss_pred             HHHHHHHHHcCCcEEEcCHHHHHHHHhcccc-------------------------------------------------
Confidence            7789999999999999999999887652100                                                 


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCC--C
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--T  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~--~  263 (467)
                                                  ..++.+|.+++||+++++++.+.+. .+.++++.||+||++..++....  .
T Consensus      3308 ----------------------------~~~~~lr~~~~gGe~l~~~~~~~~~-~~~~l~n~YG~TE~~~~~~~~~~~~~ 3358 (5163)
T PRK12316       3308 ----------------------------HRCTSLKRIVCGGEALPADLQQQVF-AGLPLYNLYGPTEATITVTHWQCVEE 3358 (5163)
T ss_pred             ----------------------------ccCCcceEEEEccccCCHHHHHHHH-hCCcEeeccCCCccEeeEeEEeccCC
Confidence                                        2344569999999999999865555 67899999999999977665433  2


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC------CeeecccEEEEcCC
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLNTGDIGWIAPH  337 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~------gw~~TGD~~~~~~~  337 (467)
                      .....++|.|+++++++|+| +.++++|.|..|||+|+|+++++||+++|+.|..+|..+      +||+|||+|++++ 
T Consensus      3359 ~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~- 3436 (5163)
T PRK12316       3359 GKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRA- 3436 (5163)
T ss_pred             CCCCCccceecCCCEEEEEC-CCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECC-
Confidence            23567899999999999999 678999999999999999999999999999999988543      6999999999999 


Q ss_pred             CCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHHHHHcccc
Q 012261          338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       338 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                               ||.++++||+|++||+ +|++|+|.|||..|.++|+|.+++|++.+.++++|+|+++.+            
T Consensus      3437 ---------dG~l~~~GR~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~~~~l~a~vv~~~~------------ 3494 (5163)
T PRK12316       3437 ---------DGVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE------------ 3494 (5163)
T ss_pred             ---------CCCEEEecccCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEccCCeEEEEEEcCCc------------
Confidence                     9999999999999998 999999999999999999999999999988889999998643            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          .....+++++++++.|+.|     ..|+.|..+++.|.+.|||++
T Consensus      3495 ----~~~~~~~l~~~l~~~Lp~y-----mvP~~~~~~~~lP~t~~GKvd 3534 (5163)
T PRK12316       3495 ----AGDLREALKAHLKASLPEY-----MVPAHLLFLERMPLTPNGKLD 3534 (5163)
T ss_pred             ----CcccHHHHHHHHHhhCCcc-----cCcceeeeHhhcCCCCCcchh
Confidence                2234567899999999888     578899999999999999985

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-39  Score=351.84  Aligned_cols=318  Identities=20%  Similarity=0.231  Sum_probs=246.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHH-hhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~-l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|+++|.     +......++++++|++++++|++|.+++...+.+ +..|+++++.   ++.
T Consensus       199 ~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~  278 (600)
T PRK08279        199 KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSAS  278 (600)
T ss_pred             cccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHH
Confidence            345699999999999999999997     3344455789999999999999999999876655 7888888884   678


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+.....                                                 
T Consensus       279 ~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-------------------------------------------------  309 (600)
T PRK08279        279 RFWDDVRRYRATAFQYIGELCRYLLNQPPKP-------------------------------------------------  309 (600)
T ss_pred             HHHHHHHHhcceEEeehHHHHHHHHhCCCCc-------------------------------------------------
Confidence            8999999999999999999998776521000                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCC-ceeeccccccccccccccCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                .....++|.  ++|+.+++++ .++.+.++. .+++.||+||++......   .
T Consensus       310 --------------------------~~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~  358 (600)
T PRK08279        310 --------------------------TDRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---F  358 (600)
T ss_pred             --------------------------cccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---C
Confidence                                      011122354  4577788887 555667765 599999999988543322   2


Q ss_pred             CCCCcccccCC----CeEEEEEeCCCC----------cccCCCCceEEE--EeCCCcCcccCCCccccccccC------C
Q 012261          265 NVLGSVGHPIN----HTEIKIVDAETN----------EVLPAGSKGIVK--VRGSQVMQGYFKNPSATKQALD------E  322 (467)
Q Consensus       265 ~~~g~vG~p~~----~~~v~i~d~~~~----------~~~~~g~~GEL~--v~~~~~~~gY~~~~~~t~~~~~------~  322 (467)
                      ...+++|.+.+    +..+...+.+.+          ..++.|+.|||+  +++++++.|| ++++.+...+.      .
T Consensus       359 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~  437 (600)
T PRK08279        359 NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKG  437 (600)
T ss_pred             CCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCC
Confidence            34567776555    333322222222          357889999998  7899999999 88888876652      3


Q ss_pred             CCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC-----ceE
Q 012261          323 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR-----RPG  397 (467)
Q Consensus       323 ~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~-----~~~  397 (467)
                      ++||+|||+|++++          +|.+++.||.||+|++ +|++|+|.|||+.|.++|+|.+++|+|.+++     ...
T Consensus       438 ~~~~~TGDlg~~~~----------dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~  506 (600)
T PRK08279        438 DAWFNTGDLMRDDG----------FGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGM  506 (600)
T ss_pred             CceEeecceEEEcC----------CccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccce
Confidence            68999999999999          9999999999999997 9999999999999999999999999997532     234


Q ss_pred             EEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          398 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       398 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ++++...+                ...+.+++.++++++|+.|     ..|+.|+++++.|.+.+||+.
T Consensus       507 ~~vv~~~~----------------~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  554 (600)
T PRK08279        507 AAIVLADG----------------AEFDLAALAAHLYERLPAY-----AVPLFVRLVPELETTGTFKYR  554 (600)
T ss_pred             eEEEecCC----------------ccCCHHHHHHHHHhhCccc-----cCCeEEEeecCCCCCcchhhh
Confidence            55555422                3467789999999999988     688999999999999999974

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-39  Score=345.06  Aligned_cols=321  Identities=20%  Similarity=0.269  Sum_probs=253.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEe---cCHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---TAVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~---~~~~~l  108 (467)
                      .++.|+|||||||.||+|+++|+.     ......+++..+|++++.+|++|.+++...+.....|+..++   .++..+
T Consensus       183 ~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~  262 (545)
T PRK08162        183 DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLI  262 (545)
T ss_pred             CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHH
Confidence            467899999999999999999971     222334567788999999999999998766555444544444   278999


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..|.+.....                                                   
T Consensus       263 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------------  291 (545)
T PRK08162        263 FDLIREHGVTHYCGAPIVLSALINAPAEW---------------------------------------------------  291 (545)
T ss_pred             HHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------------------------
Confidence            99999999999999999999987621110                                                   


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--C--
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--C--  264 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~--  264 (467)
                                              ...+..++.++++|+++++++.+.++.+++++++.||+||+++....+...  +  
T Consensus       292 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  347 (545)
T PRK08162        292 ------------------------RAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDA  347 (545)
T ss_pred             ------------------------ccCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeeccccccccc
Confidence                                    012223366788999999998766677799999999999987554443211  0  


Q ss_pred             -------CCCCcccccCC-CeEEEEEeCCCCcccCCC--CceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEE
Q 012261          265 -------NVLGSVGHPIN-HTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  334 (467)
Q Consensus       265 -------~~~g~vG~p~~-~~~v~i~d~~~~~~~~~g--~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~  334 (467)
                             ...+++|.+.+ ...++++|++++.+++.+  +.|||+++|+.++.||+++++.+...| .+|||+|||++++
T Consensus       348 ~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~  426 (545)
T PRK08162        348 LPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVL  426 (545)
T ss_pred             CCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEE
Confidence                   12345666655 346788887788888763  369999999999999999999999888 5899999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  410 (467)
                      ++          +|.+++.||.||+++. +|++|+|.+||+.|.++|+|.+++|++.+++    .+.++++++++     
T Consensus       427 d~----------dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~-----  490 (545)
T PRK08162        427 HP----------DGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDG-----  490 (545)
T ss_pred             cC----------CccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCC-----
Confidence            99          9999999999999995 9999999999999999999999999997654    46677776543     


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 .+.+.+++.+++++.++.+     .+|+.|.+ .+.+.+.+||+.
T Consensus       491 -----------~~~~~~~l~~~~~~~l~~~-----~~P~~~~~-~~iP~t~~gK~~  529 (545)
T PRK08162        491 -----------ASATEEEIIAHCREHLAGF-----KVPKAVVF-GELPKTSTGKIQ  529 (545)
T ss_pred             -----------CCCCHHHHHHHHHHhcccc-----cCCcEEEe-cccCCCCCcCCc
Confidence                       3356778999999988888     57777765 578999999974

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-39  Score=348.77  Aligned_cols=323  Identities=21%  Similarity=0.307  Sum_probs=249.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhc-ccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYD-IVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~-~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~------  103 (467)
                      .+++|+|||||||.||+|+++|.     ...... .+++.++|+++.++|++|.+++...+. ++..|+++++.      
T Consensus       177 ~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~  256 (579)
T PRK09192        177 DIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFA  256 (579)
T ss_pred             CeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHH
Confidence            45799999999999999999997     222333 678899999999999999999886554 58888888664      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.+.+++++++...|..+..+.......     .+                                      
T Consensus       257 ~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~-----~~--------------------------------------  293 (579)
T PRK09192        257 RRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK-----DL--------------------------------------  293 (579)
T ss_pred             HCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----cc--------------------------------------
Confidence             3667889999999998776555444433211000     00                                      


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhC------Cceeeccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG------VKVQVGYGLTESSP  255 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g------~~v~~~YG~TE~~~  255 (467)
                                                   -..+++.+|.+++||+++++++. ++.+.++      ..+++.||+||+++
T Consensus       294 -----------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~  344 (579)
T PRK09192        294 -----------------------------AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATL  344 (579)
T ss_pred             -----------------------------cccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccccccccccee
Confidence                                         00234456999999999999984 4444442      35999999999986


Q ss_pred             cccccCCCC----------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCc
Q 012261          256 VIAARRPTC----------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ  307 (467)
Q Consensus       256 ~~~~~~~~~----------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~  307 (467)
                      ..+......                            ...+++|.|.|+++++++| +++..++.|+.|||+++|+.++.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~  423 (579)
T PRK09192        345 AVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMS  423 (579)
T ss_pred             EEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhh
Confidence            555432211                            1135789999999999999 55889999999999999999999


Q ss_pred             ccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcc--e
Q 012261          308 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR--Q  385 (467)
Q Consensus       308 gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~--~  385 (467)
                      |||++ +.+...+..+|||+|||+|++ +          +|++++.||+||+|++ +|++|+|.|||++|.+||+|.  +
T Consensus       424 gY~~~-~~~~~~~~~dgw~~TGDlg~~-~----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~  490 (579)
T PRK09192        424 GYFRD-EESQDVLAADGWLDTGDLGYL-L----------DGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGD  490 (579)
T ss_pred             hhcCC-ccccccccCCceeeccceeeE-E----------CCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCc
Confidence            99999 667777778999999999999 7          8999999999999997 999999999999999999998  8


Q ss_pred             EEEEeeCCC---ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHH-HhhcCCCccccEEEeC--CCCC
Q 012261          386 IVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD--EPFT  459 (467)
Q Consensus       386 ~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~i~~i~~~~--~~~~  459 (467)
                      ++|++.+++   .+.++++....                ...+.+++.+++++.+.+ +     ..+..+.+++  +.|.
T Consensus       491 ~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~~~~~~lP~  549 (579)
T PRK09192        491 AAAFSIAQENGEKIVLLVQCRIS----------------DEERRGQLIHALAALVRSEF-----GVEAAVELVPPHSLPR  549 (579)
T ss_pred             EEEEEeccCCCeeEEEEEEecCC----------------ChHHHHHHHHHHHHHHHHHh-----CCCceEEEeCCCCcCC
Confidence            999998665   45555555321                234567888888888754 4     3455677775  7999


Q ss_pred             CCCCccC
Q 012261          460 VNFLCLA  466 (467)
Q Consensus       460 ~~~g~~~  466 (467)
                      +.+||+.
T Consensus       550 t~~GKv~  556 (579)
T PRK09192        550 TSSGKLS  556 (579)
T ss_pred             CCCcchh
Confidence            9999974

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-39  Score=345.99  Aligned_cols=320  Identities=24%  Similarity=0.378  Sum_probs=259.4

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh--Hhh---hccc---CCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec----
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI--RSL---YDIV---PAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~--~~~---~~~~---~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~----  103 (467)
                      .++.|+|||||||.||+|+++|..  ...   ...+   ....++.++..+|++|++++... +.++..|+++++.    
T Consensus       207 ~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~  286 (560)
T PRK08974        207 DLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPR  286 (560)
T ss_pred             CeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCcc
Confidence            456999999999999999999972  111   1112   22346788899999999997654 4457888876663    


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|.+.++|+++..+.+.....                                              
T Consensus       287 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------------------  320 (560)
T PRK08974        287 DIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ----------------------------------------------  320 (560)
T ss_pred             CHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc----------------------------------------------
Confidence            4677899999999999999999998886521000                                              


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccccccccCC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   ...+..+|.+++||+++++.+.+.+ +.+|+++++.||+||++.....+..
T Consensus       321 -----------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  371 (560)
T PRK08974        321 -----------------------------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY  371 (560)
T ss_pred             -----------------------------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCC
Confidence                                         0123456999999999999985544 4579999999999999877666544


Q ss_pred             CC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          263 TC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       263 ~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      +. ...+++|.|+++++++++| +++..++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||++++++     
T Consensus       372 ~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~-----  444 (560)
T PRK08974        372 DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE-----  444 (560)
T ss_pred             CCcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC-----
Confidence            32 3468899999999999999 468999999999999999999999999999998888 689999999999998     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           +|.+++.||++|+|++ +|.+|+|.+||+.|.++|+|.+++|++.+++.    ..++++...             
T Consensus       445 -----~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-------------  505 (560)
T PRK08974        445 -----EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-------------  505 (560)
T ss_pred             -----CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-------------
Confidence                 8999999999999997 89999999999999999999999999987654    333343321             


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.+++.+++.+++..+     +.+..+.++++.+.+.+||+.
T Consensus       506 ----~~~~~~~l~~~l~~~l~~~-----~~P~~~~~~~~lP~t~~GK~~  545 (560)
T PRK08974        506 ----PSLTEEELITHCRRHLTGY-----KVPKLVEFRDELPKSNVGKIL  545 (560)
T ss_pred             ----CCCCHHHHHHHHHhhcccc-----cCCcEEEEhhhCCCCCCCcEe
Confidence                2245678888888888877     678899999999999999974

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.6e-39  Score=410.32  Aligned_cols=320  Identities=18%  Similarity=0.230  Sum_probs=272.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~  105 (467)
                      .+++|+|||||||.||||+++|+     +......++++++|+++++.|++|..+....+.+|..|+++++.      ++
T Consensus      1274 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~ 1353 (4334)
T PRK05691       1274 NLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDP 1353 (4334)
T ss_pred             CeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence            45699999999999999999998     23344567899999999999999999988788889999999985      47


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+...                                                  
T Consensus      1354 ~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~-------------------------------------------------- 1383 (4334)
T PRK05691       1354 QRIAELVQQYGVTTLHFVPPLLQLFIDEPL-------------------------------------------------- 1383 (4334)
T ss_pred             HHHHHHHHHcCCeEEECcHHHHHHHHhCcc--------------------------------------------------
Confidence            789999999999999999999988865200                                                  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccC--
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARR--  261 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~--  261 (467)
                                                 ...++++|.+++||+++++++ .++.+.+ ++++++.||+||++..++...  
T Consensus      1384 ---------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 1436 (4334)
T PRK05691       1384 ---------------------------AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQ 1436 (4334)
T ss_pred             ---------------------------cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecc
Confidence                                       023455699999999999998 4555565 789999999999986655422  


Q ss_pred             CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-------CCeeecccEEEE
Q 012261          262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLNTGDIGWI  334 (467)
Q Consensus       262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-------~gw~~TGD~~~~  334 (467)
                      ......+++|.|+++++++|+| +.++.+|.|+.|||+|+|++++.||+++|+.|...|..       .+||+|||+|++
T Consensus      1437 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1515 (4334)
T PRK05691       1437 AEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARW 1515 (4334)
T ss_pred             cccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEE
Confidence            2234567899999999999999 56899999999999999999999999999999988843       249999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC---CceEEEEecChHHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~~~~~~~~  411 (467)
                      ++          ||.++++||+||+||+ +|++|+|.|||.+|.++|+|.+++|++.++   ..+.++++...+      
T Consensus      1516 ~~----------dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~------ 1578 (4334)
T PRK05691       1516 NA----------DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAG------ 1578 (4334)
T ss_pred             CC----------CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCC------
Confidence            99          9999999999999998 999999999999999999999999997653   457777776532      


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                .....+++.++++++|+.|     ..|+.|+.+++.|.+.|||++
T Consensus      1579 ----------~~~~~~~l~~~l~~~Lp~y-----~vP~~~~~~~~lP~t~~GKid 1618 (4334)
T PRK05691       1579 ----------QEAEAERLKAALAAELPEY-----MVPAQLIRLDQMPLGPSGKLD 1618 (4334)
T ss_pred             ----------CCCCHHHHHHHHHHhCccc-----cCCcEEEEccccCCCCCCCcC
Confidence                      3345678999999999999     588899999999999999985

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.4e-38  Score=404.92  Aligned_cols=322  Identities=19%  Similarity=0.173  Sum_probs=269.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~  105 (467)
                      .+++|+|||||||.||||+++|+     +......++++++|+++.+.|++|..+....+.++..|+++++.      ++
T Consensus      3870 ~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~ 3949 (4334)
T PRK05691       3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDP 3949 (4334)
T ss_pred             ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence            45699999999999999999998     23444567899999999999999999988888889999999885      47


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+..                                                   
T Consensus      3950 ~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~--------------------------------------------------- 3978 (4334)
T PRK05691       3950 QGLLAHVQAQGITVLESVPSLIQGMLAED--------------------------------------------------- 3978 (4334)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhhc---------------------------------------------------
Confidence            78999999999999999999998876420                                                   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ...+.+||.+++||+++++++ .+|.+.. ++++++.||.||++..++.....
T Consensus      3979 ---------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~ 4031 (4334)
T PRK05691       3979 ---------------------------RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVD 4031 (4334)
T ss_pred             ---------------------------cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcc
Confidence                                       023456699999999999998 5565654 78999999999998766543321


Q ss_pred             ----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC-------CCCeeecccEE
Q 012261          264 ----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-------EDGWLNTGDIG  332 (467)
Q Consensus       264 ----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~-------~~gw~~TGD~~  332 (467)
                          .....++|.|++++++.++| +.++++|.|..|||+|+|+++++||+++|+.|..+|.       +++||+|||+|
T Consensus      4032 ~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~ 4110 (4334)
T PRK05691       4032 LASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLA 4110 (4334)
T ss_pred             cccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcce
Confidence                12345799999999999998 7789999999999999999999999999999999984       34699999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEee---CCCceEEEEecChHHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---DQRRPGAIIVPDKEEVLM  409 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~---~~~~~~a~vv~~~~~~~~  409 (467)
                      ++++          ||.+.++||+||+||+ +|.+|.+.|||..|.++|+|.+++|+..   ..+.+.|++++.....  
T Consensus      4111 ~~~~----------dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~-- 4177 (4334)
T PRK05691       4111 RRRS----------DGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL-- 4177 (4334)
T ss_pred             eecC----------CCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc--
Confidence            9999          9999999999999998 9999999999999999999999988753   3356888888754310  


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ......+++++++++.|+.|     ..|..|..+++.|.+.|||++
T Consensus      4178 -----------~~~~~~~~l~~~l~~~Lp~y-----mvP~~~~~~~~lP~t~~GKid 4218 (4334)
T PRK05691       4178 -----------AQGALLERIKQRLRAELPDY-----MVPLHWLWLDRLPLNANGKLD 4218 (4334)
T ss_pred             -----------cchHHHHHHHHHHHhhCChh-----hcCcceeecccCCCCCCCccc
Confidence                       01112356777788888888     577899999999999999985

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-37  Score=321.83  Aligned_cols=292  Identities=19%  Similarity=0.184  Sum_probs=240.4

Q ss_pred             CCCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec---C
Q 012261           34 RDLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---A  104 (467)
Q Consensus        34 ~~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~  104 (467)
                      ....+.+++|||||||.||+|+++|+     +......++...+|+.+..+|++|.+++... +.++..|+++++.   +
T Consensus        99 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~  178 (414)
T PRK08308         99 LAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKN  178 (414)
T ss_pred             CCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence            34567899999999999999999997     2334455778889999999999999998654 5569999998884   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+.+..+.+...                                                 
T Consensus       179 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-------------------------------------------------  209 (414)
T PRK08308        179 PKFALNILRNTPQHILYAVPLMLHILGRLLP-------------------------------------------------  209 (414)
T ss_pred             HHHHHHHHHHhCCeEEEcCHHHHHHHHhcCC-------------------------------------------------
Confidence            8889999999999999999999988865210                                                 


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                   .. ..++.+++||+++++++.+.++..+.++++.||+||+++.....  ..
T Consensus       210 -----------------------------~~-~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~--~~  257 (414)
T PRK08308        210 -----------------------------GT-FQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICP--DM  257 (414)
T ss_pred             -----------------------------cc-ccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecC--CC
Confidence                                         00 12378899999999998666665578999999999998644322  22


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ..++++|.|+|++++++.+.       .++.|||++++                   .++||+|||+|++++        
T Consensus       258 ~~~~~~G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~--------  303 (414)
T PRK08308        258 KSHLDLGNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSE--------  303 (414)
T ss_pred             CCCCccCccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECC--------
Confidence            35678999999999998752       35689999974                   367999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        +|.+++.||.||+|++ +|++|+|.|||+.|.++|+|.+++|++.+++.    +.++++.+                 
T Consensus       304 --dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~-----------------  363 (414)
T PRK08308        304 --RGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISH-----------------  363 (414)
T ss_pred             --CccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC-----------------
Confidence              9999999999999997 89999999999999999999999999987653    44666554                 


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                       ...+.++++++++++++.+     ..|..|.++++.|.+.+||+.
T Consensus       364 -~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~iP~t~~GKi~  403 (414)
T PRK08308        364 -EEIDPVQLREWCIQHLAPY-----QVPHEIESVTEIPKNANGKVS  403 (414)
T ss_pred             -CCCCHHHHHHHHHHhCccc-----cCCcEEEEeccCCCCCCcCee
Confidence             2356778999999999888     577899999999999999974

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-37  Score=333.59  Aligned_cols=329  Identities=20%  Similarity=0.272  Sum_probs=245.5

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCC-CEEEEECChhHHHHHHHhH-HHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENG-DKFLSMLPPWHVYERACGY-FIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~-d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~-----  103 (467)
                      -.++.|+|||||||.||+|+++|+     .......+++.++ |++++.+|++|.+++...+ .++..|++++..     
T Consensus       152 ~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~  231 (545)
T PRK07768        152 DDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDF  231 (545)
T ss_pred             CCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHH
Confidence            345699999999999999999997     2333445667776 8999999999999987654 458999998875     


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.+++++++++...|..+..+.+.+.+....                           +             
T Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------~-------------  271 (545)
T PRK07768        232 LRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP---------------------------G-------------  271 (545)
T ss_pred             HHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc---------------------------c-------------
Confidence              3556778899999999988887776665532211000                           0             


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHH----hCC---ceeecccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA----IGV---KVQVGYGLTESS  254 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~----~g~---~v~~~YG~TE~~  254 (467)
                                                     ..++..+|.+++||+++++++.+.+..    +|.   .+++.||+||++
T Consensus       272 -------------------------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~  320 (545)
T PRK07768        272 -------------------------------AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEAT  320 (545)
T ss_pred             -------------------------------CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence                                           023345699999999999998554432    454   499999999998


Q ss_pred             ccccccCCC--------------------------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcc
Q 012261          255 PVIAARRPT--------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG  308 (467)
Q Consensus       255 ~~~~~~~~~--------------------------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~g  308 (467)
                      .........                          ...++++|.|.++++++++| ++++++++|+.|||+++|+.++.|
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~g  399 (545)
T PRK07768        321 LAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPG  399 (545)
T ss_pred             eEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCccccc
Confidence            755433221                          11346899999999999999 668999999999999999999999


Q ss_pred             cCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEE
Q 012261          309 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  388 (467)
Q Consensus       309 Y~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~V  388 (467)
                      |++.+... ..+..+|||+|||++++++          +|.+++.||.||+|++ +|++|+|.|||+.|.++|+|.+++|
T Consensus       400 y~~~~~~~-~~~~~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v  467 (545)
T PRK07768        400 YLTMDGFI-PAQDADGWLDTGDLGYLTE----------EGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNA  467 (545)
T ss_pred             ccCCCCCc-ccccCCCeeeccceEEEec----------CCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceE
Confidence            99865443 3444689999999999998          8999999999999997 8999999999999999999999888


Q ss_pred             EeeC--CC----ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeC--CCCCC
Q 012261          389 IGQD--QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTV  460 (467)
Q Consensus       389 vg~~--~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~  460 (467)
                      ++.+  +.    ....++..+..               .......++.+.+++.+.+...   .++..|.+++  +.|.+
T Consensus       468 v~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~~~~~---~~p~~v~~v~~~~lP~t  529 (545)
T PRK07768        468 VAVRLDAGHSREGFAVAVESNAF---------------EDPAEVRRIRHQVAHEVVAEVG---VRPRNVVVLGPGSIPKT  529 (545)
T ss_pred             EEEEecCCCCceEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHHHhC---CCccEEEEeCCCcCCCC
Confidence            8653  22    22233332211               0111123456666666655432   2567888887  78899


Q ss_pred             CCCccC
Q 012261          461 NFLCLA  466 (467)
Q Consensus       461 ~~g~~~  466 (467)
                      .+||+.
T Consensus       530 ~~GKi~  535 (545)
T PRK07768        530 PSGKLR  535 (545)
T ss_pred             CchhHH
Confidence            999873

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-37  Score=328.32  Aligned_cols=319  Identities=17%  Similarity=0.143  Sum_probs=253.1

Q ss_pred             ceEEEeeeCCCCCCcceehhhhhH--hhh---c---------ccCC------CCCCEEEEECChhHHHHHHHhHHHhhcC
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQIR--SLY---D---------IVPA------ENGDKFLSMLPPWHVYERACGYFIFSRG   97 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~~~--~~~---~---------~~~~------~~~d~~l~~lPl~h~~g~~~~~~~l~~G   97 (467)
                      ...|+|||||||.||+|+++|...  ...   .         ...+      ..+++++..+|++|.+++...+.++..|
T Consensus       165 ~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G  244 (533)
T PRK07798        165 DLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSG  244 (533)
T ss_pred             ceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcC
Confidence            358999999999999999999721  111   1         1111      5678999999999999998888889999


Q ss_pred             ceEEecC-----HHHHHHHHhhcCCcEeecchHHHHH-HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCccc
Q 012261           98 IELMYTA-----VRNLKDDLQRYQPHYMISVPLVYET-LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  171 (467)
Q Consensus        98 ~~~v~~~-----~~~l~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (467)
                      +++++.+     +..+++.++++++|.+.++|..+.. +.+....                                   
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-----------------------------------  289 (533)
T PRK07798        245 QTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEA-----------------------------------  289 (533)
T ss_pred             ceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcc-----------------------------------
Confidence            9999964     7889999999999999999887654 3221110                                   


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-Hh-CCceeeccc
Q 012261          172 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AI-GVKVQVGYG  249 (467)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~-g~~v~~~YG  249 (467)
                                                             .-...+..+|.+++||+++++++.+.+. .+ +..+++.||
T Consensus       290 ---------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG  330 (533)
T PRK07798        290 ---------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIG  330 (533)
T ss_pred             ---------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence                                                   0002344569999999999999955544 56 789999999


Q ss_pred             cccccccccccCCCCCCCCccc--ccCCCeEEEEEeCCCCcccCCCCc--eEEEEeCCCcCcccCCCccccccccCC---
Q 012261          250 LTESSPVIAARRPTCNVLGSVG--HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDE---  322 (467)
Q Consensus       250 ~TE~~~~~~~~~~~~~~~g~vG--~p~~~~~v~i~d~~~~~~~~~g~~--GEL~v~~~~~~~gY~~~~~~t~~~~~~---  322 (467)
                      +||++..........  ....|  .+.++..+++++ +.+++++.|+.  |+++ +++.++.||+++++.+.+.|..   
T Consensus       331 ~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~  406 (533)
T PRK07798        331 SSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDG  406 (533)
T ss_pred             ccccccccccCCCCC--CccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCC
Confidence            999976554432221  12333  678899999998 45779999987  6666 5568999999999999888743   


Q ss_pred             CCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEE
Q 012261          323 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  398 (467)
Q Consensus       323 ~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a  398 (467)
                      ++||+|||++++++          +|.+++.||+||+++. +|++|+|.+||++|.++|+|.+++|+|.++.    .+.+
T Consensus       407 ~~~~~TGD~~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~  475 (533)
T PRK07798        407 VRYAIPGDRARVEA----------DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVA  475 (533)
T ss_pred             CceEEcCcEEEEcC----------CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEE
Confidence            35999999999999          9999999999999995 9999999999999999999999999997654    4667


Q ss_pred             EEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          399 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       399 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      +++++++                ...+.+++++++++.|+.+     ++|+.|+++++.|.+.+||+.
T Consensus       476 ~v~~~~~----------------~~~~~~~l~~~l~~~l~~~-----~~P~~i~~~~~iP~t~~GK~~  522 (533)
T PRK07798        476 VVQLREG----------------ARPDLAELRAHCRSSLAGY-----KVPRAIWFVDEVQRSPAGKAD  522 (533)
T ss_pred             EEEECCC----------------CCCCHHHHHHHHhhhcccC-----CCCeEEEEcccCCCCCcchhh
Confidence            7776543                3356788999999888877     688899999999999999974

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1e-37  Score=321.14  Aligned_cols=263  Identities=21%  Similarity=0.243  Sum_probs=224.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecC------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA------  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~------  104 (467)
                      -.+..++|||||||.||+|.++|+     .......++++++|++++.+|++|.+++...+.++..|+++++.+      
T Consensus       120 ~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  199 (408)
T TIGR01733       120 DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD  199 (408)
T ss_pred             CCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC
Confidence            345699999999999999999998     334445677889999999999999999888888899999998852      


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+.+.++++++|.+.++|.+++.+.+...                                                 
T Consensus       200 ~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-------------------------------------------------  230 (408)
T TIGR01733       200 AALLAALIAEHPVTVLNLTPSLLALLAAALP-------------------------------------------------  230 (408)
T ss_pred             HHHHHHHHHHcCceEEEeCHHHHHHHHHhhh-------------------------------------------------
Confidence            4678888999999999999999999876311                                                 


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhC-CceeeccccccccccccccCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG-VKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g-~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                   ..+..+|.+++||+++++++. .+.+.++ +.+++.||+||+++.......
T Consensus       231 -----------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~  281 (408)
T TIGR01733       231 -----------------------------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLV  281 (408)
T ss_pred             -----------------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEc
Confidence                                         223456999999999999994 4555676 899999999999987753322


Q ss_pred             CCC-----CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC------C--eeecc
Q 012261          263 TCN-----VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------G--WLNTG  329 (467)
Q Consensus       263 ~~~-----~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~------g--w~~TG  329 (467)
                      ...     +++++|.|.++++++|++++ +++++.|+.|||++++++++.||+++++.+...|..+      |  ||+||
T Consensus       282 ~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TG  360 (408)
T TIGR01733       282 DADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG  360 (408)
T ss_pred             CccccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECC
Confidence            111     26789999999999999966 8999999999999999999999999999998887433      3  99999


Q ss_pred             cEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEE
Q 012261          330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  388 (467)
Q Consensus       330 D~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~V  388 (467)
                      |++++++          +|.+++.||.||+++. +|++|+|.+||+.+..+|.|++++|
T Consensus       361 Dl~~~d~----------~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       361 DLVRYLP----------DGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ceEEEcC----------CCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence            9999999          8999999999999997 9999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-37  Score=334.57  Aligned_cols=327  Identities=22%  Similarity=0.287  Sum_probs=233.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh--H---hhhc-ccC-----CCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec-
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI--R---SLYD-IVP-----AENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~--~---~~~~-~~~-----~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~-  103 (467)
                      .+++|+|||||||.||+|+++|..  .   .... .+.     ..++|++++++|++|.+++... +.+++.|+++++. 
T Consensus       161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~  240 (578)
T PRK05850        161 STAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTS  240 (578)
T ss_pred             CeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeC
Confidence            456999999999999999999982  1   1111 122     3567899999999999998764 5669999998885 


Q ss_pred             ------CHHHHHHHHhhcCCcEeecchHHHHHHHHH-HHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCC
Q 012261          104 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSG-IQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  176 (467)
Q Consensus       104 ------~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (467)
                            ++..+++.+++++++++ .+|.++..+... ....     .+                                
T Consensus       241 ~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~-----~~--------------------------------  282 (578)
T PRK05850        241 PVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD-----DM--------------------------------  282 (578)
T ss_pred             HHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----hh--------------------------------
Confidence                  36778889999999865 566654433221 0000     00                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh---C---Cceeeccc
Q 012261          177 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQVGYG  249 (467)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~---g---~~v~~~YG  249 (467)
                                                         ....++++|.+++||+++++++ .++.+.+   |   ..+++.||
T Consensus       283 -----------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG  327 (578)
T PRK05850        283 -----------------------------------AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYG  327 (578)
T ss_pred             -----------------------------------cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccc
Confidence                                               0012344599999999999998 4454554   2   36999999


Q ss_pred             cccccccccccCCCC-------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCC
Q 012261          250 LTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  304 (467)
Q Consensus       250 ~TE~~~~~~~~~~~~-------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~  304 (467)
                      +||++..........                         ....++|.|. +.+++++|++++.+++.|+.|||+++|++
T Consensus       328 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~  406 (578)
T PRK05850        328 LAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDN  406 (578)
T ss_pred             hhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCc
Confidence            999875444322110                         0011334443 57899999888899999999999999999


Q ss_pred             cCcccCCCccccccccC-----------CCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHH
Q 012261          305 VMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL  373 (467)
Q Consensus       305 ~~~gY~~~~~~t~~~~~-----------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eI  373 (467)
                      ++.|||++|+.+...|.           ++|||+|||+|+++           +|++++.||+||+|++ +|++|+|.||
T Consensus       407 ~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-----------~G~l~~~GR~~d~i~~-~G~~i~p~eI  474 (578)
T PRK05850        407 VAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-----------EGELFIVGRIKDLLIV-DGRNHYPDDI  474 (578)
T ss_pred             ccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-----------CCEEEEEcccccEEEE-CCeecCHHHH
Confidence            99999999999998884           25799999999986           6999999999999997 9999999999


Q ss_pred             HHHHHcCcCcceEEEEeeCCC---ceEEEEecChHHHHHHHHHccccccCcccCCHH--HHHHHHHHHHHHHhhc-CCCc
Q 012261          374 EEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKE--KTISLLYGELRKWTSK-CSFQ  447 (467)
Q Consensus       374 E~~l~~~p~V~~~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~l~~~~~~-~~~~  447 (467)
                      |++|.+||.+ +++|++.++.   .++++|++++..                ..+.+  ...+.+++++.+.... ...+
T Consensus       475 E~~l~~~~~~-~~~v~~v~~~~~~~~~a~v~~~~~~----------------~~~~~~~~~~~~l~~~v~~~l~~~~~~~  537 (578)
T PRK05850        475 EATIQEITGG-RVAAISVPDDGTEKLVAIIELKKRG----------------DSDEEAMDRLRTVKREVTSAISKSHGLS  537 (578)
T ss_pred             HHHHHHhcCC-cEEEEEecCCCceEEEEEEEecccc----------------CcchhhhhhHHHHHHHHHHHHHHHhCCC
Confidence            9999999985 5778887654   467888776431                11111  1334444444332211 1124


Q ss_pred             cccEEEeC--CCCCCCCCccC
Q 012261          448 IGPIHVVD--EPFTVNFLCLA  466 (467)
Q Consensus       448 i~~i~~~~--~~~~~~~g~~~  466 (467)
                      +..+.+++  +.|.+.+||+.
T Consensus       538 ~~~~~~~~~~~iP~t~~GKi~  558 (578)
T PRK05850        538 VADLVLVAPGSIPITTSGKIR  558 (578)
T ss_pred             ceEEEEeCCCCcCCCCCchHH
Confidence            56677775  68999999874

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-37  Score=351.38  Aligned_cols=312  Identities=14%  Similarity=0.107  Sum_probs=239.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhh--h---HhhhcccCCCCCCEEEEECChhHHHHHHHhHHH-hhcCceEEec---CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ--I---RSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT---AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~--~---~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~-l~~G~~~v~~---~~~~  107 (467)
                      .+++|+|| ||||.||++.++|.  .   ......++++++|++++++|++|++++...+.+ +..|+++++.   ++..
T Consensus       607 d~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~  685 (994)
T PRK07868        607 DLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDR  685 (994)
T ss_pred             ccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHH
Confidence            45789998 57777777777764  1   122244678899999999999999999876665 5556666553   6899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..+.+.....                                                  
T Consensus       686 ~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~--------------------------------------------------  715 (994)
T PRK07868        686 FVQEVRQYGVTVVSYTWAMLREVVDDPAFV--------------------------------------------------  715 (994)
T ss_pred             HHHHHHHhCCcEEEeHHHHHHHHHhCcCCc--------------------------------------------------
Confidence            999999999999999999998886520000                                                  


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC-CceeeccccccccccccccCCCCC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~  265 (467)
                                               ..+++++|.++ | +.+++++ .++.+.++ +.+++.||+||++......  ...
T Consensus       716 -------------------------~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~~~  766 (994)
T PRK07868        716 -------------------------LHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--SGA  766 (994)
T ss_pred             -------------------------cCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccccc--CCC
Confidence                                     02334558765 3 4488888 55566675 8899999999987544322  234


Q ss_pred             CCCcccccCCCe-EEEEE--eC--------CCC--cccCCCCceEEEEeCCCcCcccCCCccccc--cccC-CCCeeecc
Q 012261          266 VLGSVGHPINHT-EIKIV--DA--------ETN--EVLPAGSKGIVKVRGSQVMQGYFKNPSATK--QALD-EDGWLNTG  329 (467)
Q Consensus       266 ~~g~vG~p~~~~-~v~i~--d~--------~~~--~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~--~~~~-~~gw~~TG  329 (467)
                      +++++|.|++++ ++++.  |+        +.|  +.++.|+.|||+++++..    + +|+.+.  ..|. .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            678999999997 67764  21        344  568899999999998753    3 344322  2242 48999999


Q ss_pred             cEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC---ceEEEEecChHH
Q 012261          330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEE  406 (467)
Q Consensus       330 D~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~---~~~a~vv~~~~~  406 (467)
                      |+|++|+          ||+|+|+||+||+||+ +|.+|+|.|||++|.+||.|.+++|+|.+++   .+.|+|+++++ 
T Consensus       842 Dlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~-  909 (994)
T PRK07868        842 YLFRRDD----------DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPG-  909 (994)
T ss_pred             ceEEEcC----------CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCC-
Confidence            9999999          9999999999999997 7889999999999999999999999998764   46788887643 


Q ss_pred             HHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          407 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                     ..++.+++++++++ ++.|     .+|+.|+++++.|.+.+||+.
T Consensus       910 ---------------~~~~~~~L~~~l~~-l~~y-----~vP~~i~~v~~lP~T~sGKi~  948 (994)
T PRK07868        910 ---------------AAITAADLTEALAS-LPVG-----LGPDIVHVVPEIPLSATYRPT  948 (994)
T ss_pred             ---------------CcCCHHHHHHHHHh-CCCC-----cCCeEEEEeCCCCCCccccEe
Confidence                           34677788888874 6666     688999999999999999874

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=2.6e-37  Score=319.67  Aligned_cols=244  Identities=29%  Similarity=0.473  Sum_probs=200.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhh--cccCCCCCCEEEEECChhHHHHH-HHhHHHhhcCceEEecC---
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLY--DIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMYTA---  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~--~~~~~~~~d~~l~~lPl~h~~g~-~~~~~~l~~G~~~v~~~---  104 (467)
                      -.++.++|||||||.||+|+++|+     +..+.  ..++++  |++++++|++|++++ ...+.++..|+++++.+   
T Consensus       155 ~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  232 (417)
T PF00501_consen  155 DDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFD  232 (417)
T ss_dssp             TSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHH
T ss_pred             cceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccccc
Confidence            566799999999999999999998     11211  112333  699999999999999 56677799999999964   


Q ss_pred             ---HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          105 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       105 ---~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                         +..+++.+++++||++.++|+++..+.+..+.. .                                          
T Consensus       233 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~------------------------------------------  269 (417)
T PF00501_consen  233 LFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T------------------------------------------  269 (417)
T ss_dssp             HHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H------------------------------------------
T ss_pred             ccccccchhccccccccccccccccccccccccccc-c------------------------------------------
Confidence               345789999999999999999999997621110 0                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCC-ceeeccccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGV-KVQVGYGLTESSPVIAA  259 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~-~v~~~YG~TE~~~~~~~  259 (467)
                                                  ...+..++.+|.+++||+++++++.+ +.+.++. ++++.||+||+++..+.
T Consensus       270 ----------------------------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  321 (417)
T PF00501_consen  270 ----------------------------KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATI  321 (417)
T ss_dssp             ----------------------------HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEE
T ss_pred             ----------------------------cccccccccccccccccccCChhhccccccccccccceecccccccceeeec
Confidence                                        00013566679999999999999955 4556676 99999999999998886


Q ss_pred             cC--CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCC
Q 012261          260 RR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  337 (467)
Q Consensus       260 ~~--~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~  337 (467)
                      ..  ....+.+++|.|+++++++|+|+++++++++|+.|||+++|++++.||+++|+.+...|+++|||+|||+|++++ 
T Consensus       322 ~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~-  400 (417)
T PF00501_consen  322 RPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDE-  400 (417)
T ss_dssp             EETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEET-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEECC-
Confidence            63  223477899999999999999988899999999999999999999999999999999997668999999999999 


Q ss_pred             CCCCCccccCceEEEEccCCCeeee
Q 012261          338 HSRGRSRRCGGVLVLEGRAKDTIVL  362 (467)
Q Consensus       338 ~~~~~~~~~~G~l~i~GR~~d~i~~  362 (467)
                               +|.+++.||+||+||+
T Consensus       401 ---------~G~~~~~GR~~~~i~~  416 (417)
T PF00501_consen  401 ---------DGYLYILGRSDDMIKV  416 (417)
T ss_dssp             ---------TSEEEEEEEGSCEEEE
T ss_pred             ---------CCeEEEEEeeCCEEEe
Confidence                     9999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.7e-33  Score=289.61  Aligned_cols=280  Identities=17%  Similarity=0.112  Sum_probs=208.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCC--CCEEEEECChhHHHHHHHh-HHHhhcCceEEec---C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAEN--GDKFLSMLPPWHVYERACG-YFIFSRGIELMYT---A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~--~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~---~  104 (467)
                      ....+++|||||||.||+|+++|.     +......++++.  .|++++.+|++|++++... +.++..|+++++.   +
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            346689999999999999999997     223344456543  4689999999999998654 5568899999885   4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++..  |++.++|+++..+.+..                                                  
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~--------------------------------------------------  202 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD--------------------------------------------------  202 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC--------------------------------------------------
Confidence            56666666533  89999999998886510                                                  


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCC-ceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                   ..+++++. ++||+++++++.+.++..+. .+++.||+||++++.+...+ 
T Consensus       203 -----------------------------~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~~-  251 (386)
T TIGR02372       203 -----------------------------YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREAP-  251 (386)
T ss_pred             -----------------------------cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccCC-
Confidence                                         12233465 68899999998665555564 69999999999876554322 


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                          +..|.|.|++++++   +++.        +   .|+                   ..|++|||++++++       
T Consensus       252 ----~~~~~~~p~~~~~~---~~~~--------~---~g~-------------------~~~~~tgD~g~~d~-------  287 (386)
T TIGR02372       252 ----DDPFRLLPDLACFA---DTLS--------S---AGL-------------------ARRLDLQDRLAWDK-------  287 (386)
T ss_pred             ----CCCcccCCCccccC---CCcc--------C---CCc-------------------cceeecCceEEEcC-------
Confidence                33567777776543   1110        0   011                   12689999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHHHHHccccccCccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASE  423 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  423 (467)
                         +|++++.||+||+|++ +|++|+|.+||++|.+||.|.+++|+.. .+++.++|+++++..              ..
T Consensus       288 ---~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~-g~~~~a~vv~~~~~~--------------~~  348 (386)
T TIGR02372       288 ---DGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD-GRRLKAFIVVAEDAD--------------EA  348 (386)
T ss_pred             ---CCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC-CceEEEEEEECCCCC--------------hH
Confidence               9999999999999997 9999999999999999999999999754 357788888874310              01


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          424 LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       424 ~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+++.++++++++.|     ++|+.|.++++.|.+.+||+.
T Consensus       349 ~~~~~l~~~~~~~L~~~-----~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       349 ELEIELRATAARHLPAP-----ARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHHHhCCCC-----CCCcEEEEcccCCCCCCCCcC
Confidence            11346777777777766     688999999999999999973

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-33  Score=284.24  Aligned_cols=313  Identities=22%  Similarity=0.284  Sum_probs=238.0

Q ss_pred             ceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEe---cCHHHH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY---TAVRNL  108 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~---~~~~~l  108 (467)
                      +.+.+|||||||.||+.+++|.     +.-....++++++|+++..+|++|.++.+..+. ++..|+++++   ++++.|
T Consensus       244 ~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~F  323 (649)
T KOG1179|consen  244 PLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNF  323 (649)
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhh
Confidence            3489999999999999999997     233667789999999999999999999988765 5999999999   589999


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      |+++.++++|+...+--+++.|+.+...                                           +        
T Consensus       324 W~DC~k~~~Tv~QYIGElcRYLl~~p~~-------------------------------------------~--------  352 (649)
T KOG1179|consen  324 WDDCRKYNVTVIQYIGELCRYLLNQPPS-------------------------------------------P--------  352 (649)
T ss_pred             HHHHHHhCCeeeehHHHHHHHHHcCCCC-------------------------------------------h--------
Confidence            9999999999999888888777663110                                           0        


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhCCc-eeeccccccccccccccCCCCCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV  266 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~  266 (467)
                                                .=..+++=+.=|--+.+++ .+|.+.||.. +.+.||+||........   +..
T Consensus       353 --------------------------~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---d~~  403 (649)
T KOG1179|consen  353 --------------------------EERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---DGR  403 (649)
T ss_pred             --------------------------hhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---cCc
Confidence                                      0011244455566677777 7788899765 99999999987554443   233


Q ss_pred             CCcccccCC----CeEEEE--EeCCCCc----------ccCCCCceEEEEe--CCCc---CcccCCCcccccccc-----
Q 012261          267 LGSVGHPIN----HTEIKI--VDAETNE----------VLPAGSKGIVKVR--GSQV---MQGYFKNPSATKQAL-----  320 (467)
Q Consensus       267 ~g~vG~p~~----~~~v~i--~d~~~~~----------~~~~g~~GEL~v~--~~~~---~~gY~~~~~~t~~~~-----  320 (467)
                      .|.+|.-.-    -..+++  +|+++++          +|++||.|.++-+  ..+.   |.||.++..++++..     
T Consensus       404 vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVF  483 (649)
T KOG1179|consen  404 VGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVF  483 (649)
T ss_pred             cccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhh
Confidence            355553211    122233  3556654          6789999977543  2233   999999877777664     


Q ss_pred             -CCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----Cc
Q 012261          321 -DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RR  395 (467)
Q Consensus       321 -~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~  395 (467)
                       .+|-||+|||+-..|+          .|+++|.+|..|++.+ .||||+..|+|..|....+++||.|+|+.-    .+
T Consensus       484 kkGD~~f~tGDlLv~D~----------~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGR  552 (649)
T KOG1179|consen  484 KKGDVYFNTGDLLVADE----------LGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGR  552 (649)
T ss_pred             ccCcEEEeeCcEEEEec----------CCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCc
Confidence             3356999999999999          8999999999999999 999999999999999999999999999743    24


Q ss_pred             eE-EEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCC
Q 012261          396 PG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNF  462 (467)
Q Consensus       396 ~~-a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~  462 (467)
                      .| |.|+.+|+                .+.+.+++-..++..|+.|.     +|..+++.++...|.+
T Consensus       553 aGMAaI~~~p~----------------~~~d~~~l~~~l~~~LP~YA-----~P~FlRl~~~i~~TgT  599 (649)
T KOG1179|consen  553 AGMAAIVLDPT----------------TEKDLEKLYQHLRENLPSYA-----RPRFLRLQDEIEKTGT  599 (649)
T ss_pred             cceEEEEecCc----------------ccchHHHHHHHHHhhCcccc-----chHHHHHHhhhhcccc
Confidence            55 45555554                56788899999999999995     5555666655555443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2e-31  Score=277.79  Aligned_cols=272  Identities=19%  Similarity=0.154  Sum_probs=196.7

Q ss_pred             eEEEeeeCCCCCCcceehhhhhH--------hhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec---CHH
Q 012261           39 FSFVLIDLNTWMPIPKMTNFQIR--------SLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        39 ~~i~~TSGTTG~PK~v~~t~~~~--------~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~---~~~  106 (467)
                      ..+++||||||.||++.++|...        .....+++.++|++++..+..+..+.. ..+..+..|++++..   ++.
T Consensus        78 ~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  157 (422)
T TIGR02155        78 VRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTE  157 (422)
T ss_pred             EEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHH
Confidence            46779999999999999999711        122346889999998877655433332 334457888888764   578


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.+++++||++.++|+++..|++..++..                              .+                
T Consensus       158 ~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~------------------------------~~----------------  191 (422)
T TIGR02155       158 KQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG------------------------------ID----------------  191 (422)
T ss_pred             HHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC------------------------------CC----------------
Confidence            89999999999999999999999987433211                              00                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccc--cccccCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSP--VIAARRPT  263 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~--~~~~~~~~  263 (467)
                                                 -...++|.+++||+++++++.+.++ .+|+++++.||+||+++  +...+.. 
T Consensus       192 ---------------------------~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-  243 (422)
T TIGR02155       192 ---------------------------PAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-  243 (422)
T ss_pred             ---------------------------cccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-
Confidence                                       0112459999999999999966555 67999999999999853  2222211 


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                       ...+ ...+.+++.++++|+++++++++|+.|||++++..            ..++ ..+||+|||++++++  .|||.
T Consensus       244 -~~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~------------~~~~-p~~ry~TGDl~~~~~--~~Gr~  306 (422)
T TIGR02155       244 -TQDG-LHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT------------KEAL-PVIRYRTRDLTRLLP--GTART  306 (422)
T ss_pred             -cCCC-ceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC------------cccc-ceeeEEcCcEEEEEC--CCCCc
Confidence             1112 12233568889999889999999999999998732            2233 467999999999987  34433


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcc-eEEEEeeCC---CceEEEEecCh
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQDQ---RRPGAIIVPDK  404 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~-~~~Vvg~~~---~~~~a~vv~~~  404 (467)
                      .+  ..+++.||.||+|++ +|.+|+|.+||++|.++|.|. ++.++....   +.+...|++++
T Consensus       307 ~~--~~~~i~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~  368 (422)
T TIGR02155       307 MR--RMDRITGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKP  368 (422)
T ss_pred             cc--ccccccCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEec
Confidence            22  267899999999997 899999999999999999998 544443322   25556666653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.96  E-value=1.1e-27  Score=251.44  Aligned_cols=251  Identities=14%  Similarity=0.153  Sum_probs=182.1

Q ss_pred             EEEeeeCCCCCCcceehhhh-h----Hh---hhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEecC-HHHHH
Q 012261           40 SFVLIDLNTWMPIPKMTNFQ-I----RS---LYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYTA-VRNLK  109 (467)
Q Consensus        40 ~i~~TSGTTG~PK~v~~t~~-~----~~---~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~~-~~~l~  109 (467)
                      .|.+||||||.||++.+||. .    ..   .....+++++|+++...|..+..+.... +.++..|++++... ....+
T Consensus        90 ~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~~~~~~  169 (445)
T TIGR03335        90 TIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGKCTFPI  169 (445)
T ss_pred             EEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCchhHHH
Confidence            67789999999999999997 1    11   1223588999999999998876665443 44578888876543 35678


Q ss_pred             HHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHH
Q 012261          110 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  189 (467)
Q Consensus       110 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (467)
                      +.++++++|++.++|+.+..+++..++..                              .+                   
T Consensus       170 ~~i~~~~~t~l~~~ps~ll~La~~~~~~g------------------------------~~-------------------  200 (445)
T TIGR03335       170 RIIESYRPTGIVASVFKLLRLARRMKAEG------------------------------ID-------------------  200 (445)
T ss_pred             HHHHHhCCCEEEECHHHHHHHHHHHHHcC------------------------------CC-------------------
Confidence            89999999999999999888876433321                              00                   


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCCCCCCC
Q 012261          190 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLG  268 (467)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g  268 (467)
                                              .....+|.+++||+++++++.+.++ .+|+++++.||+||++ ....|..    ..
T Consensus       201 ------------------------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~-~~~~c~~----~~  251 (445)
T TIGR03335       201 ------------------------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGT-MCGECQA----VA  251 (445)
T ss_pred             ------------------------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhh-heEEecC----CC
Confidence                                    0112459999999999999866655 6799999999999986 2223321    11


Q ss_pred             cccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEE-cCCCC-CCCcccc
Q 012261          269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI-APHHS-RGRSRRC  346 (467)
Q Consensus       269 ~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~-~~~~~-~~~~~~~  346 (467)
                      ..+.+.+++.++|+|++++.++|+|+.|||++++..-.      .......+..   |+|||++.+ ..++| ||+... 
T Consensus       252 g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~------~~r~~~PliR---YrtgD~~~~~~~~~C~CGr~~~-  321 (445)
T TIGR03335       252 GLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKP------GERCGSLLIN---YDTEDTTVVISRDRCPCGRTHM-  321 (445)
T ss_pred             CccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCC------CccCCceEEE---eecCceEEEecCCCCCCCCCcc-
Confidence            23445567899999999899999999999999874210      0011111212   899999987 33444 776532 


Q ss_pred             CceEEEEccCCCeeeeCCceeeccHHHHHHHHcCc
Q 012261          347 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  381 (467)
Q Consensus       347 ~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p  381 (467)
                        .+...||+||++++ +|.||+|.+||++|.+.+
T Consensus       322 --r~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       322 --RILNPEREAETIWI-SGVPFNRVDVERAVFQRE  353 (445)
T ss_pred             --eeCCCcccCceEEE-CCEEeCHHHHHHHHhccC
Confidence              34456999999998 999999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.95  E-value=1.4e-25  Score=228.14  Aligned_cols=272  Identities=19%  Similarity=0.171  Sum_probs=204.0

Q ss_pred             EEEeeeCCCCCCcceehhhh--------hHhhhcccCCCCCCEEEEECChh-HHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           40 SFVLIDLNTWMPIPKMTNFQ--------IRSLYDIVPAENGDKFLSMLPPW-HVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        40 ~i~~TSGTTG~PK~v~~t~~--------~~~~~~~~~~~~~d~~l~~lPl~-h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      .|-.||||||.|+-+..++.        .+......+...+|++....-.. +..|+..-+.+-..|++++-.   +.+.
T Consensus        94 ~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~  173 (438)
T COG1541          94 RIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTER  173 (438)
T ss_pred             EEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHH
Confidence            46679999999999999987        23333446788999887665522 222222334445567666654   4577


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      -++.+++++||++.++|+++..|++.+++.....                                              
T Consensus       174 ~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~----------------------------------------------  207 (438)
T COG1541         174 QLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP----------------------------------------------  207 (438)
T ss_pred             HHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh----------------------------------------------
Confidence            8889999999999999999999999777653111                                              


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccc-cccCCCCC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVI-AARRPTCN  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~-~~~~~~~~  265 (467)
                                                 .-.++|.+++|+|+++++.++.++ .+|++.++.||+||..+.. ..|...  
T Consensus       208 ---------------------------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~--  258 (438)
T COG1541         208 ---------------------------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER--  258 (438)
T ss_pred             ---------------------------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc--
Confidence                                       111349999999999999977766 7899999999999997664 333321  


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC-CCCcc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-RGRSR  344 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~-~~~~~  344 (467)
                        ...+...++..++++||++++.+++|+.|||+++.-+       +..  .... .   |+|||+..+...+| |||..
T Consensus       259 --~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~-------~~~--~PlI-R---YrtgDit~i~~~~C~cGr~~  323 (438)
T COG1541         259 --NGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT-------KEG--MPLI-R---YRTGDITVILSDPCGCGRTH  323 (438)
T ss_pred             --cCCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc-------ccC--cceE-E---EEcCCeeEecccCCCCCCcc
Confidence              1234456889999999999999999999999998732       211  1112 2   89999999988777 77766


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcc-eEEEEeeC---CCceEEEEecCh
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQD---QRRPGAIIVPDK  404 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~-~~~Vvg~~---~~~~~a~vv~~~  404 (467)
                      +.  ...+.||.||++++ .|.+|+|.+||+.|.+.+.+. +..++-..   ...+...|++.+
T Consensus       324 ~r--i~~I~GR~dD~l~~-~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~  384 (438)
T COG1541         324 RR--IERIEGRSDDMLIV-RGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN  384 (438)
T ss_pred             cc--ccccCcccccEEEE-CCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence            55  67799999999998 799999999999999999999 55555443   456777777764

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=2.1e-24  Score=236.29  Aligned_cols=261  Identities=19%  Similarity=0.210  Sum_probs=215.5

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      ...++++|||||||.||||+++|+     .......++.+.+|+++...++.+.......+.++..|++++..      +
T Consensus       366 ~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~  445 (642)
T COG1020         366 DALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVD  445 (642)
T ss_pred             CCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCC
Confidence            346699999999999999999998     22333447888999999999998888777888889999999995      5


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+.+.++++++|.+..+|..+..+........                                              
T Consensus       446 ~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~----------------------------------------------  479 (642)
T COG1020         446 PAALLELLEAQGITVLLLVPLLLRLLLLAALAPD----------------------------------------------  479 (642)
T ss_pred             HHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc----------------------------------------------
Confidence            7888999999999999999999988876310000                                              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh--CCceeeccccccccccccccC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI--GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~--g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                 .....+.+|.+++||+.++.++.. +....  ...+.+.||.||+........
T Consensus       480 ---------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~  532 (642)
T COG1020         480 ---------------------------LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFP  532 (642)
T ss_pred             ---------------------------ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEE
Confidence                                       001122359999999999999844 55444  468999999999655444433


Q ss_pred             CCCCC--CCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC
Q 012261          262 PTCNV--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  339 (467)
Q Consensus       262 ~~~~~--~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~  339 (467)
                      .....  ..++|.|+++.++.+.| +..+.+|.|..||+++.|.++..||+++|+.|...|..+.+|+|||+++..+   
T Consensus       533 ~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~---  608 (642)
T COG1020         533 ISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLA---  608 (642)
T ss_pred             cccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECC---
Confidence            32222  45899999999999999 8899999999999999999999999999999999996545899999999888   


Q ss_pred             CCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCc
Q 012261          340 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  381 (467)
Q Consensus       340 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p  381 (467)
                             +|.+.++||.|+.+|+ .|.+|.+.|||..+.++|
T Consensus       609 -------dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         609 -------DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             -------CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence                   9999999999999997 999999999999998875

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.80  E-value=1.6e-17  Score=172.38  Aligned_cols=255  Identities=16%  Similarity=0.114  Sum_probs=168.3

Q ss_pred             ceEEEeeeCCCCCCcceehhhhhHhh------h--cccCCCCCCEEEEECC-hhHHHHHHHhHHHhhcCceEEe----cC
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQIRSL------Y--DIVPAENGDKFLSMLP-PWHVYERACGYFIFSRGIELMY----TA  104 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~~~~~------~--~~~~~~~~d~~l~~lP-l~h~~g~~~~~~~l~~G~~~v~----~~  104 (467)
                      ...+..||||||.|-.+..+......      .  ...++..++++..++. -.+.+..+.     .....+-+    .+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~-----~~~~~~~~~~l~~~  175 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVN-----NRWISLDFFDLLAP  175 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHH-----hccceeeecCCCcC
Confidence            33677899999999888888861111      1  1125566666655531 112222111     11111122    25


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      .+..++.+++++|+++.++|+.+..|++.+++...                                             
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l---------------------------------------------  210 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL---------------------------------------------  210 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC---------------------------------------------
Confidence            77899999999999999999999999986544210                                             


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                    . -.++.++++||+++++.++.++ .||++|++.||+|| |.+++.|.. 
T Consensus       211 ------------------------------~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~-  257 (430)
T TIGR02304       211 ------------------------------T-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRC-  257 (430)
T ss_pred             ------------------------------C-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCC-
Confidence                                          0 0238999999999999977665 78999999999999 555544432 


Q ss_pred             CCCCCcccccCCCeEEE--EEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC-C
Q 012261          264 CNVLGSVGHPINHTEIK--IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-R  340 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~--i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~-~  340 (467)
                          |..+.-.+.+-++  ++|++ ++       ++.++++       +.+.  ......    |+|||++...+++| |
T Consensus       258 ----g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~-------L~n~--~~PlIR----YrtGD~~~~~~~~C~C  312 (430)
T TIGR02304       258 ----GTLHLNEDLVHIEKQYLDEH-KR-------FVPIITD-------FTRT--TQPIVR----YRLNDILVESEQPCSC  312 (430)
T ss_pred             ----CCEEEccccEEEEeeEECCC-Cc-------eEEEEec-------CCCc--cceEEe----eeCCCEEEeCCCCCCC
Confidence                3344434445555  78844 32       3456665       2222  222222    89999998877776 6


Q ss_pred             CCccccCceE-EEEccCCCeeee--CCcee--eccHHHHHH-HHcCcCcceEEEEeeCCCceEEEEecC
Q 012261          341 GRSRRCGGVL-VLEGRAKDTIVL--STGEN--VEPLELEEA-ALRSSLIRQIVVIGQDQRRPGAIIVPD  403 (467)
Q Consensus       341 ~~~~~~~G~l-~i~GR~~d~i~~--~~G~~--v~p~eIE~~-l~~~p~V~~~~Vvg~~~~~~~a~vv~~  403 (467)
                      |+..+   .+ .|.||.+|++++  .+|..  |+|..+++. +...++|.+..++......+...+++.
T Consensus       313 Gr~~~---~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~  378 (430)
T TIGR02304       313 GSATM---AIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCE  378 (430)
T ss_pred             CCccc---ccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeC
Confidence            65432   34 489999999984  45655  499999988 456799999999987777776666664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=7.3e-15  Score=163.31  Aligned_cols=328  Identities=15%  Similarity=0.127  Sum_probs=204.9

Q ss_pred             EEEeeeCCCCCCcceehhhh-hHhhh----cccCCCCCCEEEEECChh--HHHHHHHhHHHhhcCceEEec------CHH
Q 012261           40 SFVLIDLNTWMPIPKMTNFQ-IRSLY----DIVPAENGDKFLSMLPPW--HVYERACGYFIFSRGIELMYT------AVR  106 (467)
Q Consensus        40 ~i~~TSGTTG~PK~v~~t~~-~~~~~----~~~~~~~~d~~l~~lPl~--h~~g~~~~~~~l~~G~~~v~~------~~~  106 (467)
                      .+.||||+||.||+|.-+|. .....    ..++.+..|++ .+.+.-  |..-......++..|+.+..+      .+.
T Consensus       200 ~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~  278 (1032)
T KOG1178|consen  200 LLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPG  278 (1032)
T ss_pred             eEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccccCccchh
Confidence            77799999999999999997 22111    22456666654 333322  111111222336667666664      278


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+.+.+++++++..+.+|+..+++......-                                           +..+.+
T Consensus       279 ~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~-------------------------------------------~~~l~~  315 (1032)
T KOG1178|consen  279 QLASTLERYGITVSHLLPAMCQLLLAILTTS-------------------------------------------LPLLEH  315 (1032)
T ss_pred             hHHHHHHhhhheeeeechhhhhhhhhhcCcc-------------------------------------------hhhhhh
Confidence            8999999999999999999999887742210                                           000000


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh-CCceeeccccccccccccccCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                         .....++..+...++....+|++.+..+.. ....+ -.-...-|+.||..+.........
T Consensus       316 -------------------~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~  376 (1032)
T KOG1178|consen  316 -------------------AFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP  376 (1032)
T ss_pred             -------------------hhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc
Confidence                               001111223333569999999999988844 44433 112222388888766544432111


Q ss_pred             -------CCCC-------cccccCCCeEEEEEeCCCCcccCCCCceEEEEe----CCCcCcccCCCccccccc--cCC--
Q 012261          265 -------NVLG-------SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR----GSQVMQGYFKNPSATKQA--LDE--  322 (467)
Q Consensus       265 -------~~~g-------~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~----~~~~~~gY~~~~~~t~~~--~~~--  322 (467)
                             ....       .+|.+   ...+... ..+.+.+.++.+..+..    +..+..|| ..++.....  ++.  
T Consensus       377 s~~ll~~~~v~~~p~~~~~~~~~---~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~  451 (1032)
T KOG1178|consen  377 SKVLLTNENVYSVPKFDSIIGSL---TVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVDGV  451 (1032)
T ss_pred             ccceecceeEEeccchhhccCCC---cceeeee-ccCcccCCcccceeecccccccceeeccc-cchhhcCCcccccccc
Confidence                   0000       11111   2222222 22334443333322222    22223332 222221111  111  


Q ss_pred             -CCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eE
Q 012261          323 -DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PG  397 (467)
Q Consensus       323 -~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~  397 (467)
                       +..|+|||.|+..+          +|.+.+.||.|+.||. +|.++...||+..+..||.|+++.+....+..    +.
T Consensus       452 ~~r~y~tgD~gr~l~----------ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~  520 (1032)
T KOG1178|consen  452 KARIYRTGDNGRSLK----------NGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLL  520 (1032)
T ss_pred             hhhcccccccceeec----------CCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEE
Confidence             23799999999888          8999999999999997 99999999999999999999999999987766    88


Q ss_pred             EEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          398 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       398 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ++|+...+.               +......++.++.++|+.|     ..|..+..+++.|.+-+||++
T Consensus       521 aFvv~~~~~---------------~~~~~~~i~~~l~~~La~y-----~vPs~~V~l~~vPl~~~GKvD  569 (1032)
T KOG1178|consen  521 AFVVERGGS---------------KSVLIRDIRNYLKKELASY-----MLPSLVVPLAKVPLNPNGKVD  569 (1032)
T ss_pred             EEEeccCCC---------------CchhHHHHHHhhcccccce-----ecceEEEEhhhCCcCCCCCcC
Confidence            999886431               2223556888888888888     577789999999999999986

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.57  E-value=1.4e-14  Score=147.43  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=90.3

Q ss_pred             CCCeeecccEEEE-cCCCCCCCccccCceEEEEccCCCeeeeCCc---eeeccHHHHHHHHcCcCcceEEEEeeCCCc--
Q 012261          322 EDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTG---ENVEPLELEEAALRSSLIRQIVVIGQDQRR--  395 (467)
Q Consensus       322 ~~gw~~TGD~~~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G---~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~--  395 (467)
                      .||||+|||+|++ |+          +|+++|.||.|      +|   +||+|. ||++|.+||+|.+|+|+|.+++.  
T Consensus       207 ~dgW~~TGDlg~~~d~----------dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g  269 (365)
T PRK09188        207 SRIWLATGKKVYNFIT----------RGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKG  269 (365)
T ss_pred             cCcEEeCCCEEEEEcC----------CCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence            6899999999998 68          99999999998      67   899999 99999999999999999987764  


Q ss_pred             --eEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          396 --PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       396 --~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        +.|+|++.                  ...+.++++++++++|+. .     .|++|.++++.|.+.+||+.
T Consensus       270 e~v~A~Vv~~------------------~~~~~~el~~~l~~~L~~-k-----vP~~v~~v~~lP~t~~GKi~  318 (365)
T PRK09188        270 VGLYAFVEAE------------------LPADEKSLRARLAGAKPP-K-----PPEHIQPVAALPRDADGTVR  318 (365)
T ss_pred             eEEEEEEEEC------------------CCCCHHHHHHHHHhhchh-c-----CCcEEEEECCCCCCCCCCcc
Confidence              55777764                  235667899999999886 4     67799999999999999984

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.97  E-value=4.6e-08  Score=99.83  Aligned_cols=118  Identities=24%  Similarity=0.307  Sum_probs=80.6

Q ss_pred             Cch-HHHHHHHH-HhCC----ceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEe
Q 012261          228 SLP-MHIDLFYE-AIGV----KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR  301 (467)
Q Consensus       228 ~l~-~~~~~~~~-~~g~----~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~  301 (467)
                      .++ ++..+.++ .+|+    ++++.||+||.....+.+..     +..  +.|.. +.++|+++..+++.|+.|-|.+-
T Consensus       238 ~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~--~~p~w-V~iRDp~tl~~~~~Ge~Gli~vi  309 (365)
T PF04443_consen  238 AVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GHF--HVPPW-VIIRDPETLEPLPPGETGLIQVI  309 (365)
T ss_pred             ccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC-----Ccc--cCCCe-EEEECCCCCcCCCCCCeeEEEEE
Confidence            354 44555555 5787    79999999998866665532     222  23333 77779999999999999999886


Q ss_pred             CCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccH
Q 012261          302 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL  371 (467)
Q Consensus       302 ~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~  371 (467)
                      ++... .             ..+..-|.|+|.+..+++||+  +.+..+.++||.+.-= + .|+.....
T Consensus       310 dl~~~-s-------------~p~~IlTeDlGvl~~~~~c~c--r~g~~f~vlGR~~~ae-~-RGCs~~~~  361 (365)
T PF04443_consen  310 DLANT-S-------------YPGFILTEDLGVLHGDDDCGC--RKGKYFEVLGRADGAE-I-RGCSLTFA  361 (365)
T ss_pred             ccccc-C-------------CCcEEEEcceeeecCCCCCCC--ccCCEEEEEeCCCCCc-c-CCcHHHHH
Confidence            54311 1             123367999999988766664  2345899999998754 2 67665433

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.95  E-value=1.9e-07  Score=102.78  Aligned_cols=313  Identities=15%  Similarity=0.103  Sum_probs=179.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT------  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~------  103 (467)
                      ..|+++-+.--++|.-.++.++|.     .......+.+.+..-++...+.+-..|+. +++...+.|...++.      
T Consensus       943 ~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~ 1022 (1363)
T KOG3628|consen  943 ETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLE 1022 (1363)
T ss_pred             CceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhh
Confidence            445577888889999999999998     22333334556666677777777666665 456668999887774      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++.-|++.++++++.-.+.+=..++...++...+   ...++....+...                      ++..+-.
T Consensus      1023 nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~---~enl~~~gnn~s~----------------------s~vv~~~ 1077 (1363)
T KOG3628|consen 1023 NNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETS---VENLSKRGNNTSS----------------------SIVVPAE 1077 (1363)
T ss_pred             cCHHHHHHHHhcccccccchhHHHHHHHHhccccc---cchhhhhhccccc----------------------ceeeecC
Confidence             4677888899988776655555555544432221   1112111111000                      0000000


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCc-eE----------------EEEecCCchHHHH-HHHHHhCCce
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KA----------------GVSGGGSLPMHID-LFYEAIGVKV  244 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-r~----------------i~~gG~~l~~~~~-~~~~~~g~~v  244 (467)
                                    +.|.  ++.-..|.++..++|.. +.                -..|-+|++..++ +.++.--+++
T Consensus      1078 --------------~RPr--~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ 1141 (1363)
T KOG3628|consen 1078 --------------ERPR--IALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRL 1141 (1363)
T ss_pred             --------------CccH--HHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceee
Confidence                          0000  00111123333333321 00                0111111111121 1111111222


Q ss_pred             eeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccc-ccc---
Q 012261          245 QVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK-QAL---  320 (467)
Q Consensus       245 ~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~-~~~---  320 (467)
                      ++      .+      .+..-.....|.-.+++++.+++||+-.+|.+|+.||||+.+.+-+.+|++..+..+ ..|   
T Consensus      1142 ve------~~------ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~r 1209 (1363)
T KOG3628|consen 1142 VE------VG------APHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNAR 1209 (1363)
T ss_pred             ee------cC------CCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhh
Confidence            22      00      000011122466678999999999999999999999999999988777775422110 111   


Q ss_pred             ------CCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHH-cCcCcceEEEEeeCC
Q 012261          321 ------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL-RSSLIRQIVVIGQDQ  393 (467)
Q Consensus       321 ------~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~-~~p~V~~~~Vvg~~~  393 (467)
                            ....|-||||+|++....+.-...--...+|++|-.++.+.+ +|-+.+|.+||+.+. .||.|.+|+|+....
T Consensus      1210 l~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g 1288 (1363)
T KOG3628|consen 1210 LSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQATG 1288 (1363)
T ss_pred             ccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeEeeCC
Confidence                  234599999999987633311111113579999999999998 999999999999976 599999998886553


Q ss_pred             CceEEEEecC
Q 012261          394 RRPGAIIVPD  403 (467)
Q Consensus       394 ~~~~a~vv~~  403 (467)
                       .++.+++..
T Consensus      1289 -lvVvviE~~ 1297 (1363)
T KOG3628|consen 1289 -LVVVVIECH 1297 (1363)
T ss_pred             -eEEEEEEec
Confidence             333344443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.66  E-value=1.3e-06  Score=93.87  Aligned_cols=159  Identities=20%  Similarity=0.241  Sum_probs=95.5

Q ss_pred             CCce-EEEEecCCchHHHHHHHHHhC--CceeeccccccccccccccCCCCCCCCcccccCCCeEEEEEeCCC-------
Q 012261          217 GISK-AGVSGGGSLPMHIDLFYEAIG--VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAET-------  286 (467)
Q Consensus       217 ~~lr-~i~~gG~~l~~~~~~~~~~~g--~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p~~~~~v~i~d~~~-------  286 (467)
                      +.|+ +.+++|+.+.+...++.+.+|  ..+-..|++||+....-.. +  +..+.+=.|-.+ -++.++.+.       
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~--~~~~~~l~~~~~-ffEFip~~~~~~~~~~  342 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P--EDPGYVLAPDSG-FFEFIPVDEDEQNPSE  342 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C--CC--EEE-TTSS-EEEEEE-STT------
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C--CCCceEeecCCe-EEEEEeccCCcccccC
Confidence            4557 778888888877777766664  3466789999964332222 1  111222223333 455555332       


Q ss_pred             -C-----cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCc--eEEEEccCCC
Q 012261          287 -N-----EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG--VLVLEGRAKD  358 (467)
Q Consensus       287 -~-----~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G--~l~i~GR~~d  358 (467)
                       .     .++..|+.-||+++..+   |.|.              |+.||+++...-.        ++  .+.|+||.+.
T Consensus       343 ~~~~l~~~ele~G~~YelviTt~~---GLyR--------------Y~iGDvVrv~gf~--------~~~P~i~F~~R~~~  397 (528)
T PF03321_consen  343 QPKTLLLHELEVGEEYELVITTNS---GLYR--------------YRIGDVVRVTGFY--------NQTPRIEFVGRRGQ  397 (528)
T ss_dssp             -SSSEEGGG--TT-EEEEEEESTT---S-SS--------------EEECEEEEEEEEE--------TTEEEEEEEEETTE
T ss_pred             CCceecHHHhcCCCeEEEEEeccc---ceee--------------eecCCEEEEeecc--------CCCcEEEEeccCCc
Confidence             1     34567778899998743   4332              8999999886521        23  7999999999


Q ss_pred             eeeeCCceeeccHHHHHHHHcC-----cCcceEEEEee----CCCceEEEEecChH
Q 012261          359 TIVLSTGENVEPLELEEAALRS-----SLIRQIVVIGQ----DQRRPGAIIVPDKE  405 (467)
Q Consensus       359 ~i~~~~G~~v~p~eIE~~l~~~-----p~V~~~~Vvg~----~~~~~~a~vv~~~~  405 (467)
                      ++.+ .|++++-.+|++++.+.     -.+.+.++..+    ..++...++++...
T Consensus       398 ~l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  398 VLSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             EE-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eeec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            9998 89999999999998864     34667777776    33566777777643

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.30  E-value=1.5e-05  Score=88.18  Aligned_cols=297  Identities=12%  Similarity=0.139  Sum_probs=181.7

Q ss_pred             CCCCCCCceEEEeeeCCCCCCcceehhhh-------------------hHhh-----hcccCCCCCCEEEEECChhHHHH
Q 012261           31 FSRRDLPLFSFVLIDLNTWMPIPKMTNFQ-------------------IRSL-----YDIVPAENGDKFLSMLPPWHVYE   86 (467)
Q Consensus        31 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~-------------------~~~~-----~~~~~~~~~d~~l~~lPl~h~~g   86 (467)
                      .|.-++|-..|=||++++|.--|++.+|.                   +.+.     ...++....+.++..+.+.--.|
T Consensus       245 ~P~~~~~~~~i~~t~s~l~~~~g~V~~~~~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lG  324 (1363)
T KOG3628|consen  245 KPRMQLPYGYIEFTRSPLGNLIGVVYKHKFLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLG  324 (1363)
T ss_pred             CCceeeeeEEEEEeccchhceeeeEeecccccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccc
Confidence            45556666688899999999999999886                   1111     11234455667776666665566


Q ss_pred             HHHh-HHHhhcCceEEec------CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 012261           87 RACG-YFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  159 (467)
Q Consensus        87 ~~~~-~~~l~~G~~~v~~------~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (467)
                      ++++ +.++..|.+.+..      .+..+...+-+++.+++..=-..+.+....+++.    +.                
T Consensus       325 lilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~----p~----------------  384 (1363)
T KOG3628|consen  325 LILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED----PK----------------  384 (1363)
T ss_pred             hhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC----cc----------------
Confidence            6654 4568899887774      3556677777888887655433443333322220    00                


Q ss_pred             HHhhhhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hhcCCceEEEEecCCchHHHH----
Q 012261          160 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ-SAIGISKAGVSGGGSLPMHID----  234 (467)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~----  234 (467)
                                            +                       .+.|++-. -+++++|.+++.-..++.+..    
T Consensus       385 ----------------------a-----------------------~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs  419 (1363)
T KOG3628|consen  385 ----------------------A-----------------------TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVS  419 (1363)
T ss_pred             ----------------------c-----------------------ccchhhccCCCccceeeeEEeeeecchHHHHHHH
Confidence                                  0                       01112211 467788988888888877753    


Q ss_pred             -HHHHHhC------------------CceeeccccccccccccccCCCC------------------------------C
Q 012261          235 -LFYEAIG------------------VKVQVGYGLTESSPVIAARRPTC------------------------------N  265 (467)
Q Consensus       235 -~~~~~~g------------------~~v~~~YG~TE~~~~~~~~~~~~------------------------------~  265 (467)
                       +|++..|                  .-....=+..|.+......+...                              .
T Consensus       420 ~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~  499 (1363)
T KOG3628|consen  420 DRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSL  499 (1363)
T ss_pred             HhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhc
Confidence             3444222                  11112222345554443332200                              0


Q ss_pred             CCCcccccCC-CeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC------------CCCeeecccEE
Q 012261          266 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------------EDGWLNTGDIG  332 (467)
Q Consensus       266 ~~g~vG~p~~-~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~------------~~gw~~TGD~~  332 (467)
                      ....+|.-.| +..+.++++++.+-|.++++|||||.++++.++||..+..|...|.            ..-+.+||=+|
T Consensus       500 s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlG  579 (1363)
T KOG3628|consen  500 SVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLG  579 (1363)
T ss_pred             CccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhccee
Confidence            1122444444 5778888999999999999999999999999999987776666551            11278999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHH----------HHHHHHcCcCcceEEEEeeCCCceEEEEec
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE----------LEEAALRSSLIRQIVVIGQDQRRPGAIIVP  402 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~e----------IE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~  402 (467)
                      ++++           |.++++|=++|.+.--.|...+..+          ++.+.+..+.|-++.++-  +++...+++=
T Consensus       580 Fv~~-----------gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~E~~~Vv~~e  646 (1363)
T KOG3628|consen  580 FVHN-----------GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--DEHIVVVVLE  646 (1363)
T ss_pred             eeeC-----------CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--cceEEEEEEe
Confidence            9997           5555555544444333566655443          344556677888888876  5666655554


Q ss_pred             ChH
Q 012261          403 DKE  405 (467)
Q Consensus       403 ~~~  405 (467)
                      +|.
T Consensus       647 sP~  649 (1363)
T KOG3628|consen  647 SPD  649 (1363)
T ss_pred             Ccc
Confidence            444

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.10  E-value=5e-06  Score=64.78  Aligned_cols=66  Identities=18%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             HHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCc
Q 012261          372 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  447 (467)
Q Consensus       372 eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  447 (467)
                      |||++|.+||+|.+|+|+|.+++    .+.|+|++  +                    .+++.++++++|+.|     ..
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~--------------------~~~i~~~~~~~l~~~-----~~   53 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D--------------------EEEIRDHLRDKLPPY-----MV   53 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H--------------------HHHHHHHHHHHS-GG-----GS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e--------------------ecccccchhhhCCCc-----ce
Confidence            79999999999999999998765    56677777  1                    267999999999999     45


Q ss_pred             c--ccEEEeCC-CCCCCCCc
Q 012261          448 I--GPIHVVDE-PFTVNFLC  464 (467)
Q Consensus       448 i--~~i~~~~~-~~~~~~g~  464 (467)
                      |  ..+..+++ .|.+.|||
T Consensus        54 P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   54 PRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             -SEEEEEEESSSEEBETTSS
T ss_pred             eeEEEEccccCcCCCCCCCC
Confidence            5  34444455 99999987

...

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.00  E-value=1.6e-05  Score=76.25  Aligned_cols=73  Identities=11%  Similarity=-0.037  Sum_probs=58.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEe---cCHHHHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY---TAVRNLKD  110 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~---~~~~~l~~  110 (467)
                      -.++.|+||||||        +|+ .... ...+++++|+++ .+|++|++|+... +.++..|+++++   +++..+++
T Consensus       150 ~D~a~l~yTsg~~--------~~~~~~~~-~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~  219 (227)
T TIGR03089       150 TAPALVAGGGEWT--------GAELVAAA-RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQ  219 (227)
T ss_pred             Ccceeeecccccc--------HHHHHHHH-hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHH
Confidence            3557999999872        223 2222 567889999999 9999999998764 566999999998   47999999


Q ss_pred             HHhhcCCc
Q 012261          111 DLQRYQPH  118 (467)
Q Consensus       111 ~i~~~~~t  118 (467)
                      .++++++|
T Consensus       220 ~i~~~~vT  227 (227)
T TIGR03089       220 IAETERVT  227 (227)
T ss_pred             HHHhhcCC
Confidence            99999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.96  E-value=0.0016  Score=70.48  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             CCceEEEE-ecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCccccc-CC-CeEEEEEeCCCC----
Q 012261          217 GISKAGVS-GGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGHP-IN-HTEIKIVDAETN----  287 (467)
Q Consensus       217 ~~lr~i~~-gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~p-~~-~~~v~i~d~~~~----  287 (467)
                      +.++++.| .++.+..-+..+.... |++++ .+||+||+....=..+...  +..+..+ .| ..-++.++.+.+    
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~--p~~~sy~L~p~~~yFEFip~~~~~~~~  370 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSD--PSDVSYTLLPNMAYFEFLPVDKNNGEV  370 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCC--ccCCceeecCCcEEEEEeecCCCcccc
Confidence            44465443 4556665554443333 66655 4899999754333322211  1112211 12 223344432221    


Q ss_pred             -------------------------cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          288 -------------------------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       288 -------------------------~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                                               ..+..|+.-||+|+.-   .|.|.              |+.||+.++..-+-.  
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLYR--------------YrlGDvv~V~GF~n~--  431 (606)
T PLN02247        371 IHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLYR--------------YRVGDILMVTGFYNN--  431 (606)
T ss_pred             cccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceEE--------------EecCCEEEEeeecCC--
Confidence                                     1455677778888762   23221              899999988652210  


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcC
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS  380 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~  380 (467)
                          .-.+.|++|.+.+..+ .|++.+-.++-.++.+.
T Consensus       432 ----~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        432 ----APQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             ----CceEEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence                2479999999999998 89999999998887763

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.93  E-value=0.0019  Score=70.24  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             ceEEEEecCCchHHHHHHHHHh-CC-ceeeccccccccccccccCCCCCCCCccccc--CCCeEEEEEeCC-C-------
Q 012261          219 SKAGVSGGGSLPMHIDLFYEAI-GV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHP--INHTEIKIVDAE-T-------  286 (467)
Q Consensus       219 lr~i~~gG~~l~~~~~~~~~~~-g~-~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p--~~~~~v~i~d~~-~-------  286 (467)
                      +.+++.||..  +-...+...+ +. .+...|++||+...+-..+.  ..+..++.-  ..+.-++.++.+ .       
T Consensus       307 i~~~~~G~~~--~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~--~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~  382 (597)
T PLN02249        307 LDVIVTGAMA--QYIPMLEYYSGGLPMASTIYASSESYFGINLNPM--CKPSEVSYTIMPNMAYFEFLPHNHDGDGALDE  382 (597)
T ss_pred             EEEEecCChH--HHHHHHHHHcCCCccccccccccceEEEeecCCC--CCCCCcceEecCCcEEEEeeecccCCcccCCC
Confidence            3455555544  4333333334 33 47788999997633322211  111111211  224555555321 1       


Q ss_pred             -----CcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeee
Q 012261          287 -----NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV  361 (467)
Q Consensus       287 -----~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~  361 (467)
                           -..+..|+.-+|+|+..   .|.|.              |+.||++++..-+-.      .-.+.|+||.+.++.
T Consensus       383 ~~~v~l~eVe~G~~Y~lVvTT~---~GLyR--------------Y~iGDvVrvtgf~~~------~P~i~F~gR~~~~ls  439 (597)
T PLN02249        383 TSLVELADVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNS------APQFKFIRRKNVLLS  439 (597)
T ss_pred             CcEecHHHcCCCCeEEEEEEcc---cceeE--------------eecCCEEEEeeccCC------CcEEEEEccCCccee
Confidence                 12345677778888762   23332              899999988762210      137999999999999


Q ss_pred             eCCceeeccHHHHHHHHc
Q 012261          362 LSTGENVEPLELEEAALR  379 (467)
Q Consensus       362 ~~~G~~v~p~eIE~~l~~  379 (467)
                      + .|++++-.+++.++.+
T Consensus       440 ~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        440 I-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             c-ccccCCHHHHHHHHHH
Confidence            7 8999999999998876

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.66  E-value=0.0074  Score=65.31  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             cCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeec
Q 012261          290 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  369 (467)
Q Consensus       290 ~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  369 (467)
                      +..|+.-||+|+.-   .|.|.              |+.||+.+...-+-.      .-.+.|++|.+-+..+ .|++.+
T Consensus       404 v~~G~~YelvvTt~---~GLyR--------------YrlGDvv~V~Gf~n~------~P~~~Fv~R~~~~lsi-~gEK~t  459 (612)
T PLN02620        404 VKLGQEYELVVTTY---AGLYR--------------YRVGDVLRVAGFKNK------APQFSFICRKNVVLSI-DSDKTD  459 (612)
T ss_pred             ccCCCeEEEEEEec---CceEE--------------EecCCEEEEeeecCC------CceEEEEeecCceeec-ccccCC
Confidence            55677778988762   23222              899999988652210      2379999999999998 899999


Q ss_pred             cHHHHHHHHcC
Q 012261          370 PLELEEAALRS  380 (467)
Q Consensus       370 p~eIE~~l~~~  380 (467)
                      -.++-.++.+.
T Consensus       460 E~~l~~Av~~a  470 (612)
T PLN02620        460 EVELQNAVKNA  470 (612)
T ss_pred             HHHHHHHHHHH
Confidence            99998887653

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=92.78  E-value=0.34  Score=39.68  Aligned_cols=74  Identities=12%  Similarity=0.043  Sum_probs=46.1

Q ss_pred             ceeeccHHHHHHHHcCcCcc-eEEEEee---CCCceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHH
Q 012261          365 GENVEPLELEEAALRSSLIR-QIVVIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  440 (467)
Q Consensus       365 G~~v~p~eIE~~l~~~p~V~-~~~Vvg~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  440 (467)
                      |.||+|.+||++|.+.|++. +..++-.   +...+...|+++++..             ...-..+++.+.+.+.|+..
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~-------------~~~~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS-------------DDAEDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC-------------TTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC-------------cchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999 5555533   2234556677764310             00013457777788888776


Q ss_pred             hhcCCCccccEEEeC
Q 012261          441 TSKCSFQIGPIHVVD  455 (467)
Q Consensus       441 ~~~~~~~i~~i~~~~  455 (467)
                      ..-.   + .|.+++
T Consensus        68 lgv~---~-~V~lv~   78 (96)
T PF14535_consen   68 LGVR---P-EVELVP   78 (96)
T ss_dssp             HSS----E-EEEEE-
T ss_pred             cCce---E-EEEEEC
Confidence            4332   2 666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	467
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-14
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		6e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-10
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		7e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		5e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-07
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-06
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		3e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		3e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		4e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 243 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 297
           K+  GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD +T + L     G 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 298 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
           + +RG Q+M+GY  NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 247 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
           GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD ET   LP    G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTG 329
           G Q+M+GY  +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 224 SGGGSLPMHIDLFYEAIGVK-----VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           SGG  L   +    EA+  +     ++ GYGLTE++  I       +  G+VG  +   E
Sbjct: 314 SGGAPLSKEVG---EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 224 SGGGSLPMHIDLFYEAIGVK-----VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           SGG  L   +    EA+  +     ++ GYGLTE++  I       +  G+VG  +   E
Sbjct: 314 SGGAPLSKEVG---EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 244 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
           ++ GYGLTE+ S +I   R   +  G+ G  +     KIVD +T + L    +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
             +M+GY  NP AT   +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 271
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+            +      +    G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 272 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 330
            PI    +++ D E   V   G   G V+++G  +  GY+ N  AT+ AL  DG+  TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 331 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 389
           I  W    +           + ++ R KD ++ S GE +              +++  V+
Sbjct: 419 IAVWDEEGY-----------VEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 390 G----QDQRRPGAIIVPDKEE 406
                + Q RP A++VP  E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
           GS P+  D   E     G  V   YG TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
            ET + LP G  G ++V+G  V +GY++ P  TK    +DG+  TGD+G I         
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 399
                V +L GR KD +V++ G NV P            + +  VIG      G    A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 400 IVPDKEEVLMAAKRLSIVHADASELSKEK 428
           +V DK   +  A+   ++H    +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 280
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 340
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I      
Sbjct: 350 VRG--DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 341 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 397
                    L ++ R KD I+ S GENV P            + ++ VIG    + G   
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 398 -AIIVPDKEEV 407
            AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 201 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 258
           H +AE L    ++  A+  ++  VSG  +LP+H  +    A G +V   YG+TE+    +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 259 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 316
            R       G+VG P+   E+++V+ +   +  L   S G ++VRG  +   Y   P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 317 KQALDEDGWLNTGDI 331
             A  EDG+  TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
           S G P+    + +VDAE +  LP G  G + +RG  V +GY+ N +AT+ A   +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 329 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 387
           GD+G                 L   GRA +  ++ T GENV P        +   I   V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 388 VIG 390
           VIG
Sbjct: 430 VIG 432

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV  GYG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 225 GGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPIN-HTEIK 280
           GG S P  +     E +  K+Q  +G+ E   V   R    +  +  + G PI+   EIK
Sbjct: 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPISSDDEIK 373
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
           IVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 374 IVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
           G KV   YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 280
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 248 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 306
           +G TE+ P +    P   +   + G P +  E+K++  E    L  G  G + +RG  + 
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 307 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 362
           +GY+K     ++    DE G  +  TGD+G+I               L  + R K+ I  
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 363 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 422
             G  + P        +   +  + VIG+     G   VP    VL    R  +   D  
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 423 ELSKEK 428
           E  +E+
Sbjct: 502 EWVRER 507

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 240 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 295
           IG ++Q  +G+ E   ++   R       ++ + G+P+    E+ + DAE N  LP G  
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 355
           G +  RG    +GY+K+P     A D +G+  +GD+  I P             + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 356 AKDTI 360
            KD I
Sbjct: 433 EKDQI 437

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 221 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 280
           A V+G    P   + F E  G+K+  G+G TE+   IA         GS+G P    +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 281 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
           ++D +    EV   G   I  + G  V     Y K+P  T++    DG+ +TGD+ W+  
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 337 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 396
                        L   GRA D I+ ++G  V P        +   + +  + G      
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 397 GAII 400
           G +I
Sbjct: 514 GQVI 517

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 14/172 (8%)
Query: 223 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
            S G +LP  I + F    G ++  G G TE   +  + R      G+ G P+   EI++
Sbjct: 306 TSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIEL 365
Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXX 341
            D E    +P G  G + ++G      Y+ N   ++     + W+ +GD     P+    
Sbjct: 366 RD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN---- 419
Query: 342 XXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 393
                    V  GR+ D + +S G+ V P        +   + +  V+G D 
Sbjct: 420 ------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 229 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 288
           LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D + N 
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 289 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
           VLP G++G + +R   +       GY  NP  T   +  D WL  GD G           
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 403
                     GRA D I+ S+G  + P            + +  VI       G ++   
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 404 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 439
           K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 229 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 288
           LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D + N 
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 289 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
           VLP G++G + +R   +       GY  NP  T   +  D WL  GD G           
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 403
                     GRA D I+ S+G  + P            + +  VI       G ++   
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 404 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 439
           K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 262 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 320
           P   ++ + G P++ + E ++ D    +V P G  G +  RG   ++GY+K       + 
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 321 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 360
            EDG+  TGDI                  +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-44
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-40
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-39
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-38
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-38
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-37
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-37
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-36
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	4e-36
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-35
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-35
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-35
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	9e-35
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-34
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-32
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-31
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	8e-23
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-20
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-15
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-12
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-04

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  160 bits (407), Expect = 5e-44
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           +  +SG   L       +    G  V   YG+TE++   +       V G+VG  +    
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
            ++ D ET + LP G  G+++V+G  V +GY++ P  TK    +DG+  TGD+G I    
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER- 389

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 398
                    G + + GR KD ++ + G NV P E+E        + +  VIG        
Sbjct: 390 ---------GYVHILGRGKDLVI-TGGFNVYPKEIESEIDAMPGVVESAVIG-------- 431

Query: 399 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP------ 450
             VP  +  E + A     +V    + + +         ++         Q+        
Sbjct: 432 --VPHADFGEGVTAV----VVRDKGATIDEA--------QVLHG---LDGQLAKFKMPKK 474

Query: 451 IHVVDE 456
           +  VD+
Sbjct: 475 VIFVDD 480

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  149 bits (379), Expect = 4e-40
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 222 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 280
            VSG  +LP+H  +    A G +V   YG+TE+    + R       G+VG P+   E++
Sbjct: 277 LVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELR 336

Query: 281 IVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
           +V+ +   +  L   S G ++VRG  +   Y   P AT  A  EDG+  TGD+    P  
Sbjct: 337 LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD- 395

Query: 339 SRGRSRRCGGVLVLEGR-AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR-- 394
                    G + + GR A D I  S G  +   E+E A L    +R+  V G+ D    
Sbjct: 396 ---------GYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445

Query: 395 -RPGAIIVPDKE 405
            R  A IVP   
Sbjct: 446 ERIVAWIVPADP 457

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  146 bits (371), Expect = 9e-39
 Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 277
               SGG  L     +          V+ GYGLTE++  I       +  G+ G  +   
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
           + K++D +T + L    +G V V+G  +M+GY  NP ATK+ +DE+GWL+TGDIG+    
Sbjct: 372 KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 432 ----------KHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG------- 473

Query: 398 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 443
              VPD    E+  A     +V      ++++        E+  + + 
Sbjct: 474 ---VPDPVAGELPGAV----VVLESGKNMTEK--------EVMDYVAS 506

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  146 bits (371), Expect = 1e-38
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 277
               SGG  L     +   +      ++ GYGLTE++  I       +  G+VG  +   
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
           E K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +    
Sbjct: 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 429

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 397
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 430 ----------EHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAG------- 471

Query: 398 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 443
              +PD +  E+  A     +V      ++++        E+  + + 
Sbjct: 472 ---LPDDDAGELPAAV----VVLEHGKTMTEK--------EIVDYVAS 504

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  145 bits (368), Expect = 2e-38
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 42/230 (18%)

Query: 223 VSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 275
            SGG  L   + D         ++  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 276 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
           + E+KIVD ET   LP    G + +RG Q+M+GY  +P AT + +D++GWL+TGDIG+I 
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
                         L +  R K+ I    G  V P ELE   +    I    V+G     
Sbjct: 423 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVG----- 466

Query: 396 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 443
                + D++  EV +A     +V ++ S+ +++        E++++ SK
Sbjct: 467 -----LKDEDAGEVPVAF----VVKSEKSQATED--------EIKQYISK 499

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  142 bits (361), Expect = 1e-37
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           +     G ++P   ++  ++ +  +    YG TE+   +  R+P     G+   P   +E
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK---TGTEMAPGFFSE 331

Query: 279 IKIVDAET--NEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
           ++IV      +E++  G +G + V  S     GY   P AT + L  DGW  T D+    
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWT 390

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
           P           G + + GR  D I+ S GEN+ P E+E     +  + ++VVIG     
Sbjct: 391 PE----------GTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEVVVIG----- 434

Query: 396 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 440
                + D+   + + A     +V      LS +         L  +
Sbjct: 435 -----LADQRWGQSVTAC----VVPRLGETLSAD--------ALDTF 464

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  141 bits (358), Expect = 7e-37
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 220 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 276
           K    GG S P  +     E +  K+Q  +G+ E              +  + G PI+  
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
            EIKIVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 370 DEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 394
                      G L + GR KD I    GE +   E+E+  L    +    ++   D++ 
Sbjct: 429 D----------GNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQF 477

Query: 395 --RPGAIIVPDKEEVLMAA 411
             +  A IV    E+    
Sbjct: 478 GEKSCAFIVSRNPELKAVV 496

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  140 bits (355), Expect = 3e-36
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 222 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPI 274
              GG  L   +       IG ++Q  +G+ E          T        ++ + G+P+
Sbjct: 307 LQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY-----TRLDDSAEKIIHTQGYPM 361

Query: 275 N-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
               E+ + DAE N + P G  G +  RG    +GY+K+P     A D +G+  +GD+  
Sbjct: 362 CPDDEVWVADAEGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420

Query: 334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QD 392
           I P           G + ++GR KD I    GE +   E+E   LR   +    ++  +D
Sbjct: 421 IDPE----------GYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAVIYAALVSMED 469

Query: 393 QR---RPGAIIVP 402
           +    +  A +V 
Sbjct: 470 ELMGEKSCAYLVV 482

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  139 bits (352), Expect = 4e-36
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 276
           +    GG               G  +Q  +G+ E          P   ++ + G P++ +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 277 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
            E ++ D    +V   G  G +  RG   ++GY+K       +  EDG+  TGDI  +  
Sbjct: 361 DESRVWDDHDRDV-KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 394
                      G +V+EGRAKD I    GE V   E+E   L    +    ++   DQ  
Sbjct: 420 D----------GYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 395 --RPGAIIVPDKEEVLMAA 411
             R    I+P ++E   AA
Sbjct: 469 GERSCVFIIP-RDEAPKAA 486

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  136 bits (346), Expect = 2e-35
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 220 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHT 277
           +  ++GG  +P  +   Y A  ++V  GY LTES                GS G     T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346

Query: 278 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 337
           ++ +   +       G   +V ++   +++ Y+  P AT+ A D +GW  TGDIG I   
Sbjct: 347 DVAVRGDDGVIR-EHGEGEVV-IKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403

Query: 338 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR- 395
                     G L ++ R KD I+ S GENV P E+E   +    + ++ VIG  D++  
Sbjct: 404 ----------GYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452

Query: 396 --PGAIIVPDKEEV 407
               AI+V D+ EV
Sbjct: 453 EIAAAIVVADQNEV 466

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  136 bits (346), Expect = 2e-35
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 220 KAGVSGGGSLPMHI-DLFYEAIGVKVQV-------GYGLTESSPVIAARRPT-CNVLGSV 270
           K   +G   +   + +   +    K           +G+TE+ P++    P   +   + 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL----DEDGWL 326
           G P++  E+K++  E    L  G  G + +RG  + +GY+K     ++          + 
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418

Query: 327 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 386
            TGD+G+I             G L  + R K+ I    G  + P ELE   ++   +  +
Sbjct: 419 RTGDVGFIDEE----------GFLHFQDRVKEVIKYK-GYTIAPFELEALLMKHEAVMDV 467

Query: 387 VVIGQ-DQRR---PGAIIVP--------DKEEVL------MAA-KRLSIVH 418
            VIG+ D+     P A IV         D+E+++      ++  KR+  V 
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVE 518

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  135 bits (341), Expect = 8e-35
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 29/196 (14%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIK 280
           + GG  L   +        + +   +G+TE+        P        +VG P  + ++K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339

Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 340
           I +            G + ++G+ VM GY      T     E+G+ NTGDI  I      
Sbjct: 340 IKNPNKEGH------GELMIKGANVMNGYLYPTDLTG-TF-ENGYFNTGDIAEIDHE--- 388

Query: 341 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR---P 396
                  G +++  R KD I+ S GEN+ P ++E  A +   I   V +G  D      P
Sbjct: 389 -------GYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440

Query: 397 GAIIVP----DKEEVL 408
               V      K +++
Sbjct: 441 KLYFVSESDISKAQLI 456

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  137 bits (346), Expect = 9e-35
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 223 VSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 275
            SG   L     D         K+  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 409

Query: 276 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335
           + E+KIVD +T + L     G + +RG Q+M+GY  NP+AT + +D+DGWL+TGDIG I 
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469

Query: 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 395
                         L +  R K+ I    G  V P ELE   +    I  + V+      
Sbjct: 470 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA----- 513

Query: 396 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKE 427
                + ++   EV +A     +V +  SELS++
Sbjct: 514 -----MKEEAAGEVPVAF----VVKSKDSELSED 538

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  133 bits (336), Expect = 4e-34
 Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 220 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI----AARRPTCNVLGSVGHPI 274
           +A        P  I+ F            +G +E+S +        RP      S G P+
Sbjct: 275 RAVTGLDT--PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-----KSAGRPL 327

Query: 275 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
               + +VDAE   + P G  G + +RG  V +GY+ N +AT+ A   +GW +TGD+G  
Sbjct: 328 FWRTVAVVDAEDRPL-PPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385

Query: 335 APHHSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ- 391
                        G L   GRA  K+ I  + GENV P E+E A  +   I   VVIG  
Sbjct: 386 DAD----------GYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVP 434

Query: 392 DQRR---PGAIIVPDKEEVLMAA 411
           D +      A+ V    E + A 
Sbjct: 435 DPQWSEAIKAVCVCKPGESIAAD 457

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  128 bits (325), Expect = 1e-32
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
           +   S G +LP    + F    G ++  G G TE   +  + R      G+ G P+   E
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338
           I++ D   + V P G  G + ++G      Y+ N   ++       W+ +GD     P+ 
Sbjct: 363 IELRDEAGHAV-PDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPN- 419

Query: 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRR-- 395
                    G  V  GR+ D + +S G+ V P+E+E   ++   + +  V+G        
Sbjct: 420 ---------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469

Query: 396 PGAIIVP 402
             A +V 
Sbjct: 470 TRAFVVL 476

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  126 bits (318), Expect = 2e-31
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 45/235 (19%)

Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG-----------SVG 271
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358

Query: 272 HPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 329
            PI    +++ D E   V P  G + G V+++G  +  GY+ N  AT+ AL  DG+  TG
Sbjct: 359 LPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

Query: 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 389
           DI                G + ++ R KD I  S GE +  ++LE A +    +++  V+
Sbjct: 418 DIAVWDEE----------GYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 390 GQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 440
                +   RP A++VP                       +E    LL     KW
Sbjct: 467 AIPHPKWQERPLAVVVP----------------RGEKPTPEELNEHLLKAGFAKW 505

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 256 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 315
                 P    L S G+PI   E+KI+D +T         G + V+ + V +GY+  P  
Sbjct: 362 FADDNSPGSYKLVSSGNPI--QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE 419

Query: 316 TKQAL--------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 367
           T+ A             +L TGD+G++               L + GR KD I++  G+N
Sbjct: 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIIIY-GKN 467

Query: 368 VEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVHADASEL 424
             P ++E + + S                G   A ++ ++ E      +L+++    +  
Sbjct: 468 HYPQDIEFSLMHSP----------LHHVLGKCAAFVIQEEHE-----YKLTVMCEVKNRF 512

Query: 425 SKEKTISLLYGELRKWTSKCSFQIGPIHVV 454
             +     L+ E+ +   + + Q+    +V
Sbjct: 513 MDDVAQDNLFNEIFELVYE-NHQLEVHTIV 541

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 78.4 bits (194), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 47/222 (21%)

Query: 223 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
           V+ G SL P  ++ +    G+ ++  YG TE+       +      G +G   +  +++I
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 282 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
           +D + N + P G++G + +R   +       GY  NP  T   +    +   GD G    
Sbjct: 388 IDDKGNVL-PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE 445

Query: 337 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 396
                      G     GRA D I  S+G  + P E+E A +    + +  VI       
Sbjct: 446 D----------GYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVETAVIS------ 488

Query: 397 GAIIVPDKEEVLMAAKRLSIVHA-----------DASELSKE 427
                PD         R  +V A           D  +L+KE
Sbjct: 489 ----SPDPV-------RGEVVKAFVVLASQFLSHDPEQLTKE 519

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 256 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 315
                      L S   P     ++IVD++T    P G+ G + V G  V  GY++ P  
Sbjct: 382 AKPCAGGGATSLISYMLPR-SPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDE 440

Query: 316 TKQAL-----------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355
           +++              E  WL TGD G++             G + + GR
Sbjct: 441 SERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 233 IDLFYEAIGVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETN 287
            + F E  G+K+  G+G TE+   IA       +P     GS+G P    +I+++D +  
Sbjct: 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKP-----GSIGKPTPGYKIELMDRDGR 412

Query: 288 EVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342
                G +G + +         +   Y K+P  T++    DG+ +TGD+ W+        
Sbjct: 413 LC-EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDED----- 465

Query: 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 376
                G L   GRA D I  ++G  V P E+E A
Sbjct: 466 -----GYLWFVGRADDII-KTSGYKVGPFEVESA 493

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 16/159 (10%)

Query: 200 LHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-----GVKVQVGYGLTESS 254
             LL    V  +++ ++        GG    +++D             +    YG T + 
Sbjct: 217 RELLKRPEVVLQMKQSL---AQITLGGT--ELNLDEIKFIASEILPDCEFSASYGSTSAL 271

Query: 255 PVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV---RGSQVMQGYF 310
            V  +    + +               +VD+ T + +  G +G V V             
Sbjct: 272 GVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVA 331

Query: 311 KNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGV 349
           +  +A +      G+        I P       +   GV
Sbjct: 332 ERDTAIR-LPGVSGFAGDRLAD-IEPLKISEGRKVIEGV 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 69/466 (14%), Positives = 140/466 (30%), Gaps = 146/466 (31%)

Query: 25  IFITLFFSRRDLPLFSFV--LIDLN-TWMPIPKMTNFQIRSLYDIVPAENGDKFLSMLPP 81
           +F TL   + ++ +  FV  ++ +N  ++    M+  +        P+     ++     
Sbjct: 67  LFWTLLSKQEEM-VQKFVEEVLRINYKFL----MSPIKTE---QRQPSMMTRMYIEQRDR 118

Query: 82  -WHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLY--SGIQKQI 138
            ++  +    Y + SR ++        L+  L   +P   +        +    G  K  
Sbjct: 119 LYNDNQVFAKYNV-SR-LQP----YLKLRQALLELRPAKNV-------LIDGVLGSGKTW 165

Query: 139 FTSSAARRVVARALIRISFAYTAFKRIYEGFCLT-RNQKQPSYLVALIDWLWARI----- 192
                      +   ++ F         + F L  +N   P  ++ ++  L  +I     
Sbjct: 166 VALDVCLS--YKVQCKMDF---------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 193 -----ICAILWPLHLLAEKL-------VYKKIQSAIGISKAGVSGGGSL--------PMH 232
                   I   +H +  +L        Y+                  L           
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----------------CLLVLLNVQNAKA 258

Query: 233 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGH-PINHTEIKIVDAETNEV 289
            + F   +  K+ +    T    V        + L +    H  ++H  + +   E   +
Sbjct: 259 WNAF--NLSCKILL---TTRFKQVT-------DFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 290 LPAGSKGIVKVRGS----QVMQGYFKNPSATKQ--ALDEDGWLNTGDIGWIAPHHSRGRS 343
           L    K  +  R      +V+     NP           D  L T D  W   H      
Sbjct: 307 L---LK-YLDCRPQDLPREVLTT---NPRRLSIIAESIRD-GLATWD-NW--KH------ 349

Query: 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV-- 401
                   +      TI+ S+   +EP E  +      +  ++ V       P  ++   
Sbjct: 350 --------VNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVFPPSAHIPTILLSLI 395

Query: 402 ---PDKEEVLMAAKRL---SIVHADASELSKEKTISL--LYGELRK 439
                K +V++   +L   S+V        KE TIS+  +Y EL+ 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQ----PKESTISIPSIYLELKV 437

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 40/171 (23%)

Query: 220 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTE-SSPVIAARRPTCNVLGSVGHPIN-- 275
           K G+ G       + +     +G+     YGL+E   P +A     C         I   
Sbjct: 215 KIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVAC---ECVETKDGPV-IWED 270

Query: 276 --HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW----LNTG 329
             + EI  +D  T EVLP GS+G +                 T  +L ++        T 
Sbjct: 271 HFYPEI--IDPVTGEVLPDGSQGELVF---------------T--SLTKEAMPVIRYRTR 311

Query: 330 DIGWIAPHHSRGRS-RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 379
           D+  + P     R+ RR   +    GR+ D +++  G NV P ++EE  + 
Sbjct: 312 DLTALLP--PTARAMRRLAKIT---GRSDDMLIVR-GVNVFPSQIEEIVVA 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.98
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.89
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.89
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.88
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.87

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=3.1e-52  Score=441.91  Aligned_cols=322  Identities=23%  Similarity=0.321  Sum_probs=277.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|+++|+     .......++++++|++++.+|++|.+++.. .+.++..|+++++.   ++.
T Consensus       155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  234 (503)
T 4fuq_A          155 DDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPD  234 (503)
T ss_dssp             TSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHH
T ss_pred             CCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHH
Confidence            345699999999999999999998     334556678999999999999999999765 45668899998885   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++  ++|++.++|+++..+.+....                                                  
T Consensus       235 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~--------------------------------------------------  262 (503)
T 4fuq_A          235 KILDLMA--RATVLMGVPTFYTRLLQSPRL--------------------------------------------------  262 (503)
T ss_dssp             HHHHHHT--TCCEEEECHHHHHHHHTCTTC--------------------------------------------------
T ss_pred             HHHHHHh--hcCEEEEHHHHHHHHHhCCCc--------------------------------------------------
Confidence            8999987  899999999999988762100                                                  


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTCN  265 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  265 (467)
                                               ....++++|.+++||+++++++. ++.+.+|.++++.||+||++...........
T Consensus       263 -------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  317 (503)
T 4fuq_A          263 -------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDR  317 (503)
T ss_dssp             -------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCC
T ss_pred             -------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCC
Confidence                                     01345667999999999999985 4555779999999999999877655444556


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      .++++|.|+++++++++|+++++++|.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++         
T Consensus       318 ~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~---------  388 (503)
T 4fuq_A          318 VPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE---------  388 (503)
T ss_dssp             CTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT---------
T ss_pred             cCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC---------
Confidence            77899999999999999999999999999999999999999999999999999998899999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.++|+++++                
T Consensus       389 -dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~----------------  450 (503)
T 4fuq_A          389 -RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG----------------  450 (503)
T ss_dssp             -TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------------
T ss_pred             -CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC----------------
Confidence             9999999999999997 9999999999999999999999999998664    35678887653                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       451 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  490 (503)
T 4fuq_A          451 ATIDEAQVLHGLDGQLAKF-----KMPKKVIFVDDLPRNTMGKVQ  490 (503)
T ss_dssp             CCCCHHHHHHHHBTTBCGG-----GCCSEEEEESCCCBCTTSCBC
T ss_pred             CCCCHHHHHHHHHhhcccC-----CCCCEEEEECCCCCCccccee
Confidence            4567788999999998888     578899999999999999985

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=6.2e-52  Score=442.78  Aligned_cols=324  Identities=24%  Similarity=0.362  Sum_probs=278.8

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh--H---hhh----cccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI--R---SLY----DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~--~---~~~----~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~--  103 (467)
                      -.+++|+|||||||.||+|+++|+.  .   ...    ..+++.++|++++++|++|++++... +.++..|+++++.  
T Consensus       178 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~  257 (536)
T 3ni2_A          178 DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPK  257 (536)
T ss_dssp             TSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSS
T ss_pred             cCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            4456999999999999999999981  1   111    13567899999999999999998655 5569999999985  


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..+.+....                                              
T Consensus       258 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  291 (536)
T 3ni2_A          258 FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL----------------------------------------------  291 (536)
T ss_dssp             CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG----------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc----------------------------------------------
Confidence             688999999999999999999999988752100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh-CCceeecccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                   -..+++++|.+++||+++++++.+.+ +.+ ++++++.||+||++++.+.+
T Consensus       292 -----------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~  342 (536)
T 3ni2_A          292 -----------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC  342 (536)
T ss_dssp             -----------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEEC
T ss_pred             -----------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcc
Confidence                                         01456677999999999999995554 566 89999999999999765544


Q ss_pred             C-----CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261          261 R-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       261 ~-----~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~  335 (467)
                      .     .....++++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|+++
T Consensus       343 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~  422 (536)
T 3ni2_A          343 LAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID  422 (536)
T ss_dssp             GGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             cccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc
Confidence            2     22346789999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+.+++      
T Consensus       423 ~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------  485 (536)
T 3ni2_A          423 D----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK------  485 (536)
T ss_dssp             T----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------
T ss_pred             C----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC------
Confidence            9          9999999999999998 9999999999999999999999999997654    45678887643      


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ...+.++++++++++|+.|     .+|++|.++++.|.+.+||+.
T Consensus       486 ----------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~lP~t~~GKi~  525 (536)
T 3ni2_A          486 ----------SQATEDEIKQYISKQVIFY-----KRIKRVFFIEAIPKAPSGKIL  525 (536)
T ss_dssp             ----------CCCCHHHHHHHHHTTSCGG-----GCCSEEEECSCCCBCTTSCBC
T ss_pred             ----------CCCCHHHHHHHHHHhccCC-----ccccEEEEEecCCCCCCCCee
Confidence                      4567789999999999888     578899999999999999985

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=7.1e-52  Score=443.69  Aligned_cols=323  Identities=23%  Similarity=0.322  Sum_probs=278.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcc---cCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec---
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDI---VPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT---  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~---~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~---  103 (467)
                      -.+++|+|||||||.||+|+++|+     +......   ++++++|++++++|++|++++...+. ++ .|+++++.   
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~  270 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKF  270 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCC
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCC
Confidence            346799999999999999999998     1222233   67889999999999999999876544 46 99999985   


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|++.++|+++..|.+....                              .                
T Consensus       271 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------~----------------  304 (548)
T 2d1s_A          271 DEETFLKTLQDYKCTSVILVPTLFAILNKSELL------------------------------N----------------  304 (548)
T ss_dssp             CHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG------------------------------G----------------
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc------------------------------c----------------
Confidence            689999999999999999999999988752000                              0                


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh-CCceeeccccccccccccccC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~-g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                   ...++++|.+++||+++++++.+ +.+.+ +.++++.||+||+++..+.++
T Consensus       305 -----------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  355 (548)
T 2d1s_A          305 -----------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP  355 (548)
T ss_dssp             -----------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC
T ss_pred             -----------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC
Confidence                                         02456679999999999999954 45567 688999999999998776655


Q ss_pred             CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      ......+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++     
T Consensus       356 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~-----  430 (548)
T 2d1s_A          356 EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE-----  430 (548)
T ss_dssp             TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT-----
T ss_pred             cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC-----
Confidence            445677899999999999999988899999999999999999999999999999999998899999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++            
T Consensus       431 -----dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~------------  492 (548)
T 2d1s_A          431 -----EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG------------  492 (548)
T ss_dssp             -----TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------
T ss_pred             -----CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC------------
Confidence                 9999999999999997 9999999999999999999999999998765    45688887643            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.++++++++++|+.|     .+|+ .|.++++.|.+.+||+.
T Consensus       493 ----~~~~~~~l~~~~~~~l~~~-----~~p~~~i~~v~~lP~t~~GKi~  533 (548)
T 2d1s_A          493 ----KNMTEKEVMDYVASQVSNA-----KRLRGGVRFVDEVPKGLTGKID  533 (548)
T ss_dssp             ----CCCCHHHHHHHHHTTSCGG-----GSCTTCEEECSSCCBCTTSCBC
T ss_pred             ----CCCCHHHHHHHHHHhcccc-----ccccccEEEccCCCCCCcchhH
Confidence                3467788999999888888     5777 89999999999999984

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=7.2e-52  Score=443.60  Aligned_cols=323  Identities=22%  Similarity=0.304  Sum_probs=197.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----Hhhhcc---cCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~---~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~  105 (467)
                      .+++|+|||||||.||+|+++|+.     ......   +++.++|++++++|++|++++...+.++..|+++++.   ++
T Consensus       191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~  270 (550)
T 3rix_A          191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEE  270 (550)
T ss_dssp             SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred             CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCH
Confidence            357999999999999999999981     122222   4678899999999999999998778889999999995   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....                                                
T Consensus       271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------  302 (550)
T 3rix_A          271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLID------------------------------------------------  302 (550)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG------------------------------------------------
T ss_pred             HHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc------------------------------------------------
Confidence            99999999999999999999999887621000                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCc-eeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVK-VQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~-v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ..+++++|.+++||+++++++.+ +.+.++.. +++.||+||+++..+..+..
T Consensus       303 ---------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  355 (550)
T 3rix_A          303 ---------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG  355 (550)
T ss_dssp             ---------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             ---------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC
Confidence                                       13456779999999999999954 45577765 99999999999888877776


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++       
T Consensus       356 ~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~-------  428 (550)
T 3rix_A          356 DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE-------  428 (550)
T ss_dssp             CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred             CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC-------
Confidence            6788999999999999999988999999999999999999999999999999999998899999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++.    +.++|+++++              
T Consensus       429 ---dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~--------------  490 (550)
T 3rix_A          429 ---DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--------------  490 (550)
T ss_dssp             ---TCCEEEC----------------------------------------------------------------------
T ss_pred             ---CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC--------------
Confidence               9999999999999997 99999999999999999999999999987653    4567776543              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++++++++++..+     .++. .|.++++.|.+.+||+.
T Consensus       491 --~~~~~~~l~~~~~~~l~~~-----~~~~~~i~~v~~lP~t~~GKi~  531 (550)
T 3rix_A          491 --KTMTEKEIVDYVASQVTTA-----KKLRGGVVFVDEVPKGLTGKLD  531 (550)
T ss_dssp             ------------------------------------------------
T ss_pred             --CCCCHHHHHHHHHHhcccc-----cccCCceEEEeecCCCCCccee
Confidence              3456678999999998887     4554 69999999999999985

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.7e-51  Score=437.19  Aligned_cols=321  Identities=17%  Similarity=0.254  Sum_probs=273.1

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~  106 (467)
                      .+++|+|||||||.||||+++|+     +......++++++|++++++|++|.+++..  .+.++..|+++++.   ++.
T Consensus       183 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~  262 (539)
T 1mdb_A          183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD  262 (539)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHH
T ss_pred             ceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHH
Confidence            45699999999999999999998     233445578899999999999999999875  56679999999985   689


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+.....                                                 
T Consensus       263 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  293 (539)
T 1mdb_A          263 DAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------------  293 (539)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred             HHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------------
Confidence            9999999999999999999999987742211                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC-C
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT-C  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~  264 (467)
                                                ..+++++|.+++||+++++++.+ +.+.+|+++++.||+||++......... .
T Consensus       294 --------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  347 (539)
T 1mdb_A          294 --------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEE  347 (539)
T ss_dssp             --------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHH
T ss_pred             --------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHH
Confidence                                      13456779999999999999854 4556799999999999965433322111 1


Q ss_pred             CCCCcccccCCC-eEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 NVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~~~-~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ...+++|.|+++ .+++++| +.+++++.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++       
T Consensus       348 ~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-------  419 (539)
T 1mdb_A          348 IIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR-------  419 (539)
T ss_dssp             HHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred             hcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-------
Confidence            245789999975 5899999 6789999999999999999999999999999999998899999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++    .+.|+|+++.               
T Consensus       420 ---dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------------  480 (539)
T 1mdb_A          420 ---DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD---------------  480 (539)
T ss_dssp             ---TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------------
T ss_pred             ---CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------------
Confidence               9999999999999995 9999999999999999999999999998765    4567777752               


Q ss_pred             CcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.++++++++++ |+.|     ..|+.|.++++.|.+.+||+.
T Consensus       481 --~~~~~~~l~~~l~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  521 (539)
T 1mdb_A          481 --EAPKAAELKAFLRERGLAAY-----KIPDRVEFVESFPQTGVGKVS  521 (539)
T ss_dssp             --SCCCHHHHHHHHHHTTCCGG-----GSCSEEEECSSCCBCTTSCBC
T ss_pred             --CCCCHHHHHHHHHhCCCCcc-----cCCCEEEEeccCCCCCCcCEe
Confidence              235678899999987 8888     578899999999999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=9.3e-51  Score=430.88  Aligned_cols=326  Identities=24%  Similarity=0.292  Sum_probs=268.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~~  106 (467)
                      -.+++|+|||||||.||+|+++|+     +......++++++|++++.+|++|.+++.. .+.++..|+++++.   ++.
T Consensus       155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  234 (505)
T 3nyq_A          155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTE  234 (505)
T ss_dssp             TSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHH
T ss_pred             CCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChH
Confidence            345699999999999999999998     334455678999999999999999999875 46679999999985   678


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.+ ++++|++.++|+++..+.+.....    +.                                           
T Consensus       235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----~~-------------------------------------------  266 (505)
T 3nyq_A          235 GAAREL-NDGATMLFGVPTMYHRIAETLPAD----PE-------------------------------------------  266 (505)
T ss_dssp             HHHHHH-TTTCCEEEECHHHHHHHHHHGGGC----HH-------------------------------------------
T ss_pred             HHHHHH-hhCCeEEEehHHHHHHHHHhhhcC----ch-------------------------------------------
Confidence            888888 789999999999999987732211    00                                           


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCCC
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN  265 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  265 (467)
                                               ....++++|.+++||+++++++.+ +.+.+|.++++.||+||++...+.......
T Consensus       267 -------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  321 (505)
T 3nyq_A          267 -------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEP  321 (505)
T ss_dssp             -------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCC
T ss_pred             -------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCC
Confidence                                     012344459999999999999855 445679999999999999987776666666


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCC---CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~---g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                      ..+++|.|+++++++++| +++++++.   |+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++      
T Consensus       322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~------  394 (505)
T 3nyq_A          322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP------  394 (505)
T ss_dssp             CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT------
T ss_pred             CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC------
Confidence            788999999999999999 55788776   89999999999999999999999999998899999999999999      


Q ss_pred             ccccCceEEEEccC-CCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          343 SRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       343 ~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                          ||.+++.||+ ||+|+. +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++.+            
T Consensus       395 ----dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~------------  457 (505)
T 3nyq_A          395 ----DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP------------  457 (505)
T ss_dssp             ----TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST------------
T ss_pred             ----CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC------------
Confidence                9999999998 588986 9999999999999999999999999998764    56788887642            


Q ss_pred             ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ....+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       458 ---~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  498 (505)
T 3nyq_A          458 ---AAPPALGTLADHVAARLAPH-----KRPRVVRYLDAVPRNDMGKIM  498 (505)
T ss_dssp             ---TSCCCHHHHHHHHHHHTCGG-----GSCSEEEECSCCCC-------
T ss_pred             ---CCCCCHHHHHHHHHhhCCCC-----cCccEEEEECCCCCCCCcCee
Confidence               14466789999999999999     578899999999999999985

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.4e-51  Score=438.26  Aligned_cols=328  Identities=20%  Similarity=0.321  Sum_probs=258.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+++|+|||||||.||||+++|.     +......+++.++|++++++|++|.+++...+.++..|+++++.   ++..
T Consensus       180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  259 (549)
T 3g7s_A          180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEM  259 (549)
T ss_dssp             TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHH
T ss_pred             CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHH
Confidence            345799999999999999999997     33445567899999999999999999988766779999999884   7899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..+.+.......                                                
T Consensus       260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------------  291 (549)
T 3g7s_A          260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------------------------------------  291 (549)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------------------------------------
T ss_pred             HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------------------------------------
Confidence            99999999999999999999999874322100                                                


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHH----hC---Cceeeccccccccccccc
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEA----IG---VKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~----~g---~~v~~~YG~TE~~~~~~~  259 (467)
                                               ..+++.+|.+++||+++++++.+ +.+.    ++   +++++.||+||+++..+.
T Consensus       292 -------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  346 (549)
T 3g7s_A          292 -------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT  346 (549)
T ss_dssp             -------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred             -------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence                                     02456679999999999999844 4444    56   899999999999987776


Q ss_pred             cCCCC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC--CCC--eeecccEEEE
Q 012261          260 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGWI  334 (467)
Q Consensus       260 ~~~~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~--~~g--w~~TGD~~~~  334 (467)
                      ..... ...+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|.  .+|  ||+|||+|++
T Consensus       347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~  426 (549)
T 3g7s_A          347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI  426 (549)
T ss_dssp             CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEE
T ss_pred             CCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEE
Confidence            65433 467899999999999999989999999999999999999999999999999999984  577  9999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  410 (467)
                      ++          ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++.    
T Consensus       427 ~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~----  491 (549)
T 3g7s_A          427 DE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY----  491 (549)
T ss_dssp             CT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT----
T ss_pred             cC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc----
Confidence            99          9999999999999997 9999999999999999999999999998765    466888887541    


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ....+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       492 ----------~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  532 (549)
T 3g7s_A          492 ----------RGKVDEEDIIEWVRERISGY-----KRVREVEFVEELPRTASGKLL  532 (549)
T ss_dssp             ----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC--------
T ss_pred             ----------cCcCCHHHHHHHHHHhccCc-----ccceEEEEeccCCCCCCcCEe
Confidence                      13467889999999999888     578899999999999999985

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.7e-50  Score=428.40  Aligned_cols=320  Identities=21%  Similarity=0.284  Sum_probs=273.9

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+++|+|||||||.||+|+++|+     +......++++++|++++++|++|++++...+.++..|+++++.   ++..
T Consensus       170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~  249 (517)
T 3r44_A          170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATK  249 (517)
T ss_dssp             TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred             CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHH
Confidence            345699999999999999999998     33445667899999999999999999998777776699999985   6899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..+.+....                                                   
T Consensus       250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------  278 (517)
T 3r44_A          250 VWSLIVEERVCIGGAVPAILNFMRQVPEF---------------------------------------------------  278 (517)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHSHHH---------------------------------------------------
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCccc---------------------------------------------------
Confidence            99999999999999999999988763111                                                   


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--CC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--CN  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~  265 (467)
                                              ...+++++|.+++||+++++++.+.+...++++++.||+||+++..+.....  ..
T Consensus       279 ------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  334 (517)
T 3r44_A          279 ------------------------AELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALR  334 (517)
T ss_dssp             ------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGGTTT
T ss_pred             ------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCccccc
Confidence                                    0134567799999999999999777776699999999999998766654432  34


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      ..+++|.|.++++++++| +++..++.| .|||+++|++++.|||++|+.|...| .+|||+|||+|++++         
T Consensus       335 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~---------  402 (517)
T 3r44_A          335 KAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD---------  402 (517)
T ss_dssp             TTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT---------
T ss_pred             cCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC---------
Confidence            678999999999999999 668889988 89999999999999999999999999 689999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++.    +.++| +.++                
T Consensus       403 -dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~----------------  463 (517)
T 3r44_A          403 -EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQ----------------  463 (517)
T ss_dssp             -TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECT----------------
T ss_pred             -CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCC----------------
Confidence             9999999999999996 99999999999999999999999999987654    33444 3222                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       464 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  503 (517)
T 3r44_A          464 NEVSEQQIVEYCGTRLARY-----KLPKKVIFAEAIPRNPTGKIL  503 (517)
T ss_dssp             TTCCHHHHHHHHHHHSCGG-----GSCSEEEECSCCCBCTTCCBC
T ss_pred             CCCCHHHHHHHHHHhCCCC-----CCCCEEEEECCCCCCCCcCcc
Confidence            4567889999999999999     578899999999999999985

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.2e-50  Score=427.42  Aligned_cols=321  Identities=19%  Similarity=0.237  Sum_probs=269.2

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCC--CCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~--~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~  105 (467)
                      .+++|+|||||||.||+|+++|+     +......+++  .++|++++++|++|++++.. .+.++..|+++++.   ++
T Consensus       154 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~  233 (504)
T 1t5h_X          154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP  233 (504)
T ss_dssp             SEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCH
T ss_pred             CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCH
Confidence            45699999999999999999998     2233345677  78899999999999999854 56679999999985   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+...+..                            .                  
T Consensus       234 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------~------------------  267 (504)
T 1t5h_X          234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------------S------------------  267 (504)
T ss_dssp             HHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------------C------------------
T ss_pred             HHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------------c------------------
Confidence            899999999999999999999999876321000                            0                  


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ...++++|.+++||+++++++.+ +.+.++..+++.||+||++......   .
T Consensus       268 ---------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~  317 (504)
T 1t5h_X          268 ---------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---Q  317 (504)
T ss_dssp             ---------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---S
T ss_pred             ---------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccccccc---C
Confidence                                       02456679999999999999954 4556799999999999994332222   3


Q ss_pred             CCCCcccccCCCeEEEEEeCCCC--cccCCCCceEEEEe-CCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          265 NVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~--~~~~~g~~GEL~v~-~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      ...+++|.|.++++++++|.+.+  ++++.|+.|||+++ |++++.|||++|+.|...| .+|||+|||+|++++     
T Consensus       318 ~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~-----  391 (504)
T 1t5h_X          318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP-----  391 (504)
T ss_dssp             CSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-----
T ss_pred             CCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC-----
Confidence            45689999999999999995432  89999999999999 9999999999999999999 689999999999999     


Q ss_pred             CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261          342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  417 (467)
Q Consensus       342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  417 (467)
                           ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++            
T Consensus       392 -----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------------  453 (504)
T 1t5h_X          392 -----EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------------  453 (504)
T ss_dssp             -----TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT------------
T ss_pred             -----CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC------------
Confidence                 9999999999999996 9999999999999999999999999998764    47788888654            


Q ss_pred             ccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          418 HADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       418 ~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ...+.+++++++++ +|+.|     +.|++|+++++.|.+.+||+.
T Consensus       454 ----~~~~~~~l~~~~~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  494 (504)
T 1t5h_X          454 ----ETLSADALDTFCRSSELADF-----KRPKRYFILDQLPKNALNKVL  494 (504)
T ss_dssp             ----CCCCHHHHHHHHHTSSCCGG-----GSCSEEEECSCCCBCTTSCBC
T ss_pred             ----cCcCHHHHHHHHhhccCccc-----ccceEEEEhhhCCCCCCCCEe
Confidence                34677889999988 78888     688999999999999999985

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=7e-51  Score=435.25  Aligned_cols=322  Identities=24%  Similarity=0.345  Sum_probs=238.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH-----h--hhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----S--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~--~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~  104 (467)
                      -.+++|+|||||||.||+|+++|+..     .  ....++++++|++++++|++|++++...+.++..|+++++.    +
T Consensus       176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~  255 (541)
T 1v25_A          176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD  255 (541)
T ss_dssp             TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCS
T ss_pred             CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCC
Confidence            34568999999999999999999821     1  22346788999999999999999987677789999999984    6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..|.+.....                                               
T Consensus       256 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------------------  288 (541)
T 1v25_A          256 PASLVELFDGEGVTFTAGVPTVWLALADYLEST-----------------------------------------------  288 (541)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             HHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----------------------------------------------
Confidence            889999999999999999999999997743221                                               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                  ..+++++|.+++||+++++++.+.++.+|+++++.||+||+++..+.+....
T Consensus       289 ----------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~  340 (541)
T 1v25_A          289 ----------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKS  340 (541)
T ss_dssp             ----------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCG
T ss_pred             ----------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccc
Confidence                                        1345677999999999999996555778999999999999987766654321


Q ss_pred             -----------CCCCcccccCCCeEEEEEeCCCCcccCC--CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccE
Q 012261          265 -----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  331 (467)
Q Consensus       265 -----------~~~g~vG~p~~~~~v~i~d~~~~~~~~~--g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~  331 (467)
                                 ...+++|.|+++++++|+| +.+++++.  ++.|||+++|++++.|||++|+.|...|..+|||+|||+
T Consensus       341 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl  419 (541)
T 1v25_A          341 HLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI  419 (541)
T ss_dssp             GGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEE
T ss_pred             cccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCE
Confidence                       2357899999999999999 56788884  368999999999999999999999999987999999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  407 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  407 (467)
                      |++++          ||.+++.||+||+||. +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++ +  
T Consensus       420 g~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~--  485 (541)
T 1v25_A          420 AVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-G--  485 (541)
T ss_dssp             EEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------
T ss_pred             EEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-C--
Confidence            99999          9999999999999996 9999999999999999999999999998765    456666664 1  


Q ss_pred             HHHHHHccccccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          408 LMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                    ...+.+++++++++ +|+.|     +.|+.|+++++.|.+.+||+.
T Consensus       486 --------------~~~~~~~l~~~~~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  526 (541)
T 1v25_A          486 --------------EKPTPEELNEHLLKAGFAKW-----QLPDAYVFAEEIPRTSAGKFL  526 (541)
T ss_dssp             -----------------------------CCCTT-----TSCSBC--------------C
T ss_pred             --------------CCCCHHHHHHHHHhccCccc-----cCCcEEEEeCCCCCCCccCee
Confidence                          22345677788877 67777     678899999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=5.8e-50  Score=437.54  Aligned_cols=324  Identities=15%  Similarity=0.100  Sum_probs=273.1

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~------  103 (467)
                      .+++|+|||||||.||||+++|+.      ......++++++|++++++|++|+++.. ..+.+|..|+++++.      
T Consensus       257 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~  336 (652)
T 1pg4_A          257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW  336 (652)
T ss_dssp             SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred             CCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCC
Confidence            456999999999999999999981      1233457899999999999999999984 456789999999984      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..|.+...+..                                            
T Consensus       337 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------------  372 (652)
T 1pg4_A          337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--------------------------------------------  372 (652)
T ss_dssp             SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc--------------------------------------------
Confidence             47889999999999999999999998876211000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhC---Cceeecccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG---VKVQVGYGLTESSPVIA  258 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g---~~v~~~YG~TE~~~~~~  258 (467)
                                                   ...+++++|.+++||+++++++.++ .+.+|   +++++.||+||+++.++
T Consensus       373 -----------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  423 (652)
T 1pg4_A          373 -----------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI  423 (652)
T ss_dssp             -----------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred             -----------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence                                         0134677899999999999999555 45677   89999999999997666


Q ss_pred             ccCCC--CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCccccccccC--CCCeeecccEE
Q 012261          259 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIG  332 (467)
Q Consensus       259 ~~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~--~~gw~~TGD~~  332 (467)
                      ...+.  ..+.+++|.|+++++++|+| +.+++++.|+.|||+++|  |+++.|||++++.+...+.  .+|||+|||+|
T Consensus       424 ~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg  502 (652)
T 1pg4_A          424 TPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA  502 (652)
T ss_dssp             CCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred             cCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEE
Confidence            65432  34679999999999999999 568999999999999999  7999999999998887763  38999999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          ||.++|.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++   
T Consensus       503 ~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~---  568 (652)
T 1pg4_A          503 RRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG---  568 (652)
T ss_dssp             EECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT---
T ss_pred             EEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC---
Confidence            9999          9999999999999998 8999999999999999999999999998654    47788988754   


Q ss_pred             HHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+   .++++++++++|..|     ..|+.|+++++.|.+.+||+.
T Consensus       569 -------------~~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~T~sGKi~  611 (652)
T 1pg4_A          569 -------------EEPSPELYAEVRNWVRKEIGPL-----ATPDVLHWTDSLPKTRSGKIM  611 (652)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHTCGG-----GCCSEEEECSCCCBCTTSCBC
T ss_pred             -------------CCCCHHHHHHHHHHHHHhCCCC-----cCCeEEEEcCCCCCCCCccch
Confidence                         1122   456777888777777     588899999999999999984

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.1e-50  Score=431.18  Aligned_cols=324  Identities=20%  Similarity=0.222  Sum_probs=264.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----~  104 (467)
                      -.+++|+|||||||.||+|+++|.     .......+++.++|+++...|+.|..+... .+.++..|+++++.     +
T Consensus       225 ~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  304 (580)
T 3etc_A          225 EDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFE  304 (580)
T ss_dssp             TSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCC
T ss_pred             CCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCC
Confidence            345699999999999999999997     223334568889999999999999888765 45668999998874     5


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..|.+..                                  .               
T Consensus       305 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------------------------~---------------  335 (580)
T 3etc_A          305 AKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------------------------L---------------  335 (580)
T ss_dssp             HHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------------------------C---------------
T ss_pred             HHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------------------------c---------------
Confidence            889999999999999999999998886510                                  0               


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 -..+++++|.+++||+++++++. ++.+.+|+++++.||+||++...+..+..
T Consensus       336 ---------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  388 (580)
T 3etc_A          336 ---------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM  388 (580)
T ss_dssp             ------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS
T ss_pred             ---------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC
Confidence                                       01356677999999999999994 55557799999999999998777766666


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC-----CCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  338 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~-----~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~  338 (467)
                      ..+++++|.|+++++++|+| +++++++.|+.|||++++     ++++.|||++|+.|...| .+|||+|||+|++++  
T Consensus       389 ~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~--  464 (580)
T 3etc_A          389 EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDE--  464 (580)
T ss_dssp             CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECT--
T ss_pred             CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECC--
Confidence            66889999999999999999 559999999999999997     789999999999999999 599999999999999  


Q ss_pred             CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHc
Q 012261          339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  414 (467)
Q Consensus       339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  414 (467)
                              ||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++.        
T Consensus       465 --------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~--------  527 (580)
T 3etc_A          465 --------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY--------  527 (580)
T ss_dssp             --------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------
T ss_pred             --------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC--------
Confidence                    9999999999999997 8999999999999999999999999998765    355778876541        


Q ss_pred             cccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          415 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                           ...+...+++++++++.|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       528 -----~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~sGKi~  569 (580)
T 3etc_A          528 -----TPSDSLKNELQDHVKNVTAPY-----KYPRIIEFVPELPKTISGKIR  569 (580)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCGG-----GCCSEEEEECC----------
T ss_pred             -----CCCHHHHHHHHHHHHhhCCCc-----cCCeEEEEeCCCCCCCCcCCc
Confidence                 001112457777777777777     578899999999999999984

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=5.7e-50  Score=430.41  Aligned_cols=314  Identities=18%  Similarity=0.170  Sum_probs=265.3

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.+++|+|||||||.||||+++|+     .......++++++|++++++|++|.++....+.++..|+++++.      +
T Consensus       182 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~  261 (563)
T 1amu_A          182 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIND  261 (563)
T ss_dssp             TSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTC
T ss_pred             CCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcC
Confidence            345799999999999999999998     22344567889999999999999999987777889999999985      4


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+..                                                    
T Consensus       262 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------------------------------------------------  289 (563)
T 1amu_A          262 FVKFEQYINQKEITVITLPPTYVVHLDP----------------------------------------------------  289 (563)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHTTSCT----------------------------------------------------
T ss_pred             HHHHHHHHHHcCCcEEEeCHHHHHHHHh----------------------------------------------------
Confidence            6789999999999999999999866532                                                    


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                   ..+.++|.+++||+++++++.+.+.. .+++++.||+||++...+......
T Consensus       290 -----------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~  339 (563)
T 1amu_A          290 -----------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATK  339 (563)
T ss_dssp             -----------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEECCS
T ss_pred             -----------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheeeeccc
Confidence                                         23455699999999999998655544 389999999999987665543222


Q ss_pred             ---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC------CCeeecccEEEEc
Q 012261          265 ---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDIGWIA  335 (467)
Q Consensus       265 ---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~------~gw~~TGD~~~~~  335 (467)
                         ...+++|.|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.|...|..      ++||+|||+|+++
T Consensus       340 ~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d  418 (563)
T 1amu_A          340 ETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL  418 (563)
T ss_dssp             SCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEEC
T ss_pred             ccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEc
Confidence               3567899999999999999 67899999999999999999999999999999888843      4699999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.+++    .+.|+|+++        
T Consensus       419 ~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~--------  479 (563)
T 1amu_A          419 S----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE--------  479 (563)
T ss_dssp             T----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES--------
T ss_pred             C----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC--------
Confidence            9          9999999999999997 9999999999999999999999999998654    466777764        


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       480 ----------~~~~~~~l~~~l~~~L~~y-----~~P~~i~~v~~lP~t~~GKi~  519 (563)
T 1amu_A          480 ----------KHIPLEQLRQFSSEELPTY-----MIPSYFIQLDKMPLTSNGKID  519 (563)
T ss_dssp             ----------SCCCHHHHHHHHHHHSCGG-----GSCSEEEECSSCCBCTTSSBC
T ss_pred             ----------CCCCHHHHHHHHHhhCchh-----hCCcEEEEecccCCCCCcChh
Confidence                      2356788999999999988     578899999999999999985

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.2e-50  Score=433.62  Aligned_cols=322  Identities=22%  Similarity=0.275  Sum_probs=200.6

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AV  105 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~  105 (467)
                      -.+++|+|||||||.||+|+++|+     +......++++++|++++++|++|.+++..  .+.++..|+++++.   ++
T Consensus       191 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~  270 (544)
T 3o83_A          191 DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEP  270 (544)
T ss_dssp             TSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCH
T ss_pred             cceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCH
Confidence            345699999999999999999998     344555678999999999999999999875  56679999999995   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.++++++|++.++|+++..+.+.....                                                
T Consensus       271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------  302 (544)
T 3o83_A          271 LNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------------------------------  302 (544)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT------------------------------------------------
T ss_pred             HHHHHHHHHHCCCEEEechHHHHHHHhchhhc------------------------------------------------
Confidence            89999999999999999999999887742110                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ...++++|.+++||+++++++.+. .+.+|+++++.||+||++..........
T Consensus       303 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~  355 (544)
T 3o83_A          303 ---------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD  355 (544)
T ss_dssp             ---------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCH
T ss_pred             ---------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCch
Confidence                                       134567799999999999999554 4567999999999999885544433222


Q ss_pred             -CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261          265 -NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  342 (467)
Q Consensus       265 -~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~  342 (467)
                       ...+++|.|+ ++++++++| ++++++++|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++      
T Consensus       356 ~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~------  428 (544)
T 3o83_A          356 EQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP------  428 (544)
T ss_dssp             HHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT------
T ss_pred             hhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC------
Confidence             2457899996 899999999 7899999999999999999999999999999999998899999999999999      


Q ss_pred             ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccc
Q 012261          343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVH  418 (467)
Q Consensus       343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~  418 (467)
                          ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++.    +.|+|++++              
T Consensus       429 ----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------------  489 (544)
T 3o83_A          429 ----DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN--------------  489 (544)
T ss_dssp             ----TSCEEEEEEEC-----------------------------------------------------------------
T ss_pred             ----CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC--------------
Confidence                9999999999999995 99999999999999999999999999987654    456666643              


Q ss_pred             cCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          419 ADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       419 ~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                         ...+.+++++++++ .|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       490 ---~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  530 (544)
T 3o83_A          490 ---PELKAVVLRRHLMELGIAQY-----KLPDQIKLIESLPLTAVGKVD  530 (544)
T ss_dssp             -------------------------------------------------
T ss_pred             ---CCCCHHHHHHHHHhCCCCcc-----cCCcEEEEeccCCCCCCCCCc
Confidence               22455678888888 78888     578899999999999999985

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.1e-49  Score=420.60  Aligned_cols=323  Identities=22%  Similarity=0.223  Sum_probs=270.3

Q ss_pred             CCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------
Q 012261           35 DLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------  103 (467)
Q Consensus        35 ~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------  103 (467)
                      .-.+++|+|||||||.||+|+++|.     +......++++++|++++++|++|.+++...+.++..|+++++.      
T Consensus       142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  221 (511)
T 3e7w_A          142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVN  221 (511)
T ss_dssp             TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhc
Confidence            3456799999999999999999998     33444567899999999999999999988778889999999985      


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|++.++|+++..+.+....                                 .             
T Consensus       222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------~-------------  255 (511)
T 3e7w_A          222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF---------------------------------S-------------  255 (511)
T ss_dssp             SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------------------------------S-------------
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------------------------------c-------------
Confidence            577899999999999999999999887652000                                 0             


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccC
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                   ...++++|.+++||+++++++. ++.+.+ ++++++.||+||+++..+...
T Consensus       256 -----------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  306 (511)
T 3e7w_A          256 -----------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVE  306 (511)
T ss_dssp             -----------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEE
T ss_pred             -----------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEe
Confidence                                         1345677999999999999995 455567 899999999999987766543


Q ss_pred             CC-----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-CC--eeecccEEE
Q 012261          262 PT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGW  333 (467)
Q Consensus       262 ~~-----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-~g--w~~TGD~~~  333 (467)
                      ..     ....+++|.|.++++++++| +++++++.|+.|||+++|++++.|||++|+.|...|.. +|  ||+|||+|+
T Consensus       307 ~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~  385 (511)
T 3e7w_A          307 ITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF  385 (511)
T ss_dssp             ECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEE
T ss_pred             ccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEE
Confidence            21     23557899999999999999 56999999999999999999999999999999998832 33  799999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      + +          ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++    
T Consensus       386 ~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~----  449 (511)
T 3e7w_A          386 I-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH----  449 (511)
T ss_dssp             E-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC----
T ss_pred             c-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc----
Confidence            9 5          7999999999999997 9999999999999999999999999997654    57788888643    


Q ss_pred             HHHHccccccCcccCC----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ....    .++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       450 ------------~~~~~~~~~~~l~~~l~~~L~~~-----~~P~~~~~v~~lP~t~~GKi~  493 (511)
T 3e7w_A          450 ------------EFEKEFQLTSAIKKELAASLPAY-----MIPRKFIYQDHIQMTANGKID  493 (511)
T ss_dssp             ------------CCSSHHHHHHHHHHHHHHHSCGG-----GSCSEEEECSCCCBCTTSCBC
T ss_pred             ------------cccchhhHHHHHHHHHHhhCchh-----hCCeeEEEeccCCCCCCcCcc
Confidence                        1122    245666777777677     578899999999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.8e-50  Score=433.14  Aligned_cols=321  Identities=18%  Similarity=0.184  Sum_probs=196.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH----hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR----SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AVR  106 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~~  106 (467)
                      -.+++|+|||||||.||||+++|+..    .....++++++|++++++|++|..+....+.++..|+++++.     ++.
T Consensus       214 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~  293 (570)
T 4gr5_A          214 EDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPL  293 (570)
T ss_dssp             TSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHH
T ss_pred             CCeEEEEECCcCCCCCeEEEEecHHHHHHHHhhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHH
Confidence            34569999999999999999999821    223446788999999999999877776777789999999884     578


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+..                                                    
T Consensus       294 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------------------------------------------  321 (570)
T 4gr5_A          294 EIGELVARHGVTMLQLSASLFNFLVDEV----------------------------------------------------  321 (570)
T ss_dssp             HHHHHHHHHTCCEEEEEHHHHHHHHHHC----------------------------------------------------
T ss_pred             HHHHHHHHcCCcEEEecHHHHHHHHhhc----------------------------------------------------
Confidence            9999999999999999999999887521                                                    


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCCC-
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT-  263 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-  263 (467)
                                                ...++++|.+++||++++.++ .++.+.+ ++++++.||+||+++..+..... 
T Consensus       322 --------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  375 (570)
T 4gr5_A          322 --------------------------PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA  375 (570)
T ss_dssp             --------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG
T ss_pred             --------------------------hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc
Confidence                                      134566799999999999877 5666666 89999999999998766654321 


Q ss_pred             ---CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC--------CeeecccEE
Q 012261          264 ---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWLNTGDIG  332 (467)
Q Consensus       264 ---~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~--------gw~~TGD~~  332 (467)
                         .....++|.|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.|...|..+        |||+|||+|
T Consensus       376 ~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg  454 (570)
T 4gr5_A          376 GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA  454 (570)
T ss_dssp             GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred             cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence               23456799999999999999 669999999999999999999999999999999988543        799999999


Q ss_pred             EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261          333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  408 (467)
Q Consensus       333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  408 (467)
                      ++++          ||.++|.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++    .+.|+|+++++.  
T Consensus       455 ~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~--  521 (570)
T 4gr5_A          455 RRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD--  521 (570)
T ss_dssp             EECT----------TSCEEEEEC---------------------------------------------------------
T ss_pred             EECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCC--
Confidence            9999          9999999999999997 9999999999999999999999999998654    466777765431  


Q ss_pred             HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                   ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       522 -------------~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  561 (570)
T 4gr5_A          522 -------------APPDAAELRRHVAEALPAY-----MVPVECVPVDELPRTPNGKLD  561 (570)
T ss_dssp             ----------------------------------------------------------
T ss_pred             -------------CCcCHHHHHHHHHhhCccc-----cCCcEEEEcccCCCCCCcCcc
Confidence                         3356678999999999999     577899999999999999985

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4.9e-49  Score=423.76  Aligned_cols=326  Identities=17%  Similarity=0.199  Sum_probs=272.0

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhHh-----hhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIRS-----LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~~-----~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----~  104 (467)
                      -.+++|+|||||||.||+|+++|....     ....++++++|++++++|++|++++.. .+.++..|+++++.     +
T Consensus       206 ~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  285 (570)
T 3c5e_A          206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFD  285 (570)
T ss_dssp             TSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCC
T ss_pred             CCcEEEEECCCCCCCCCEEEechHHHHhhhhhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCC
Confidence            345699999999999999999998221     114567889999999999999999874 56679999998874     6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+..      ..                                          
T Consensus       286 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~------------------------------------------  317 (570)
T 3c5e_A          286 PLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS------------------------------------------  317 (570)
T ss_dssp             HHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT------------------------------------------
T ss_pred             HHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc------------------------------------------
Confidence            889999999999999999999999886520      00                                          


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                  ..+++++|.+++||+++++++.+ +.+.+|+++++.||+||++..++.....
T Consensus       318 ----------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  369 (570)
T 3c5e_A          318 ----------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM  369 (570)
T ss_dssp             ----------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS
T ss_pred             ----------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCccc
Confidence                                        02456679999999999999854 5556799999999999998766555444


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEe-----CCCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  338 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~-----~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~  338 (467)
                      ....+++|.|+++++++|+| ++++++|.|+.|||+++     |++++.|||++|+.|...| .+|||+|||+|++++  
T Consensus       370 ~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~--  445 (570)
T 3c5e_A          370 KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE--  445 (570)
T ss_dssp             CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECT--
T ss_pred             ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcC--
Confidence            45778999999999999999 56899999999999999     9999999999999999998 489999999999999  


Q ss_pred             CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHc
Q 012261          339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  414 (467)
Q Consensus       339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  414 (467)
                              ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.+++    .+.|+|+++++..       
T Consensus       446 --------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-------  509 (570)
T 3c5e_A          446 --------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL-------  509 (570)
T ss_dssp             --------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-------
T ss_pred             --------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-------
Confidence                    9999999999999996 9999999999999999999999999998654    4568888765420       


Q ss_pred             cccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          415 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                          ....+...++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       510 ----~~~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  552 (570)
T 3c5e_A          510 ----SHDPEQLTKELQQHVKSVTAPY-----KYPRKIEFVLNLPKTVTGKIQ  552 (570)
T ss_dssp             ----TSCHHHHHHHHHHHHHHHSCGG-----GSCSEEEEESCCCBCTTCCBC
T ss_pred             ----CcchHHHHHHHHHHHHhhCccc-----cCCcEEEEeccCCCCCCcCCc
Confidence                0000112456777777777777     578899999999999999985

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.6e-49  Score=419.92  Aligned_cols=322  Identities=20%  Similarity=0.190  Sum_probs=266.1

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~  104 (467)
                      -.+++|+|||||||.||+|+++|.     +......++++++|++++++|++|.+++...+.++..|+++++.      +
T Consensus       144 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  223 (512)
T 3fce_A          144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIAR  223 (512)
T ss_dssp             TSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHS
T ss_pred             CCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhC
Confidence            455699999999999999999998     33444567899999999999999999987778889999999985      5


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+......                                 .              
T Consensus       224 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------~--------------  256 (512)
T 3fce_A          224 PKDLFASLEQSDIQVWTSTPSFAEMCLMEASF---------------------------------S--------------  256 (512)
T ss_dssp             HHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------------S--------------
T ss_pred             HHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------------c--------------
Confidence            77899999999999999999999887542100                                 0              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                  ...++++|.+++||+++++++. ++.+.+ ++++++.||+||+++..+....
T Consensus       257 ----------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  308 (512)
T 3fce_A          257 ----------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV  308 (512)
T ss_dssp             ----------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred             ----------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence                                        1346677999999999999994 555567 8999999999999877665433


Q ss_pred             CC-----CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc---CCCCeeecccEEEE
Q 012261          263 TC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWI  334 (467)
Q Consensus       263 ~~-----~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~---~~~gw~~TGD~~~~  334 (467)
                      ..     ...+++|.|.++++++++| ++++++++|+.|||+++|++++.|||++|+.|...|   +++|||+|||+|++
T Consensus       309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~  387 (512)
T 3fce_A          309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV  387 (512)
T ss_dssp             CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred             ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence            21     3567899999999999999 779999999999999999999999999999999887   45779999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  410 (467)
                       +          ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++.    .+.|+|+++++     
T Consensus       388 -~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~-----  450 (512)
T 3fce_A          388 -E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH-----  450 (512)
T ss_dssp             -E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC-----
T ss_pred             -c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc-----
Confidence             6          8999999999999997 9999999999999999999999999987553    46688887643     


Q ss_pred             HHHccccccCcccCC----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ...+    .++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       451 -----------~~~~~~~~~~~l~~~l~~~L~~~-----~~P~~~~~~~~lP~t~~GKi~  494 (512)
T 3fce_A          451 -----------SFEKEFKLTSAIKKELNERLPNY-----MIPRKFMYQSSIPMTPNGKVD  494 (512)
T ss_dssp             -----------CCSSHHHHHHHHHHHHHTTSCGG-----GSCSEEEECSCCCBCTTSSBC
T ss_pred             -----------cccchhhhHHHHHHHHHhhCchh-----cCCeEEEEecccCCCCCcChH
Confidence                       1112    235666666666666     578899999999999999985

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.9e-49  Score=414.14  Aligned_cols=311  Identities=21%  Similarity=0.260  Sum_probs=261.7

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN  107 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~  107 (467)
                      -.+++|+|||||||.||+|+++|.     .......++++++|++++++|++|++++...+.++..|+++++.   ++..
T Consensus       163 ~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~  242 (501)
T 3ipl_A          163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQ  242 (501)
T ss_dssp             TSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred             CCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHH
Confidence            456799999999999999999998     33445567899999999999999999998877889999999995   6899


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..|.+...                                                    
T Consensus       243 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------------------------  270 (501)
T 3ipl_A          243 ILTMIKNERITHISLVPQTLNWLMQQGL----------------------------------------------------  270 (501)
T ss_dssp             HHHHHHHSCCCEEEECHHHHHHHHHHTC----------------------------------------------------
T ss_pred             HHHHHHHcCCcEEEchHHHHHHHHhcCC----------------------------------------------------
Confidence            9999999999999999999998876210                                                    


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--CC
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--CN  265 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~  265 (467)
                                                ....++|.+++||+++++++.+.+..+++++++.||+||+++..+.....  ..
T Consensus       271 --------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  324 (501)
T 3ipl_A          271 --------------------------HEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHA  324 (501)
T ss_dssp             --------------------------CSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECHHHHHH
T ss_pred             --------------------------CCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCcccccc
Confidence                                      00014599999999999999776667899999999999998765554332  23


Q ss_pred             CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261          266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  345 (467)
Q Consensus       266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~  345 (467)
                      ..+++|.|+++++++++|++      .|+.|||+++|++++.|||++++.+.. + .+|||+|||+|++++         
T Consensus       325 ~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~---------  387 (501)
T 3ipl_A          325 RPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH---------  387 (501)
T ss_dssp             CTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT---------
T ss_pred             CCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC---------
Confidence            67899999999999999954      466899999999999999999999987 5 689999999999999         


Q ss_pred             cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261          346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                       +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++.    +.++++..                  
T Consensus       388 -~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~------------------  447 (501)
T 3ipl_A          388 -EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE------------------  447 (501)
T ss_dssp             -TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES------------------
T ss_pred             -CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC------------------
Confidence             9999999999999995 99999999999999999999999999987664    44666653                  


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       448 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  487 (501)
T 3ipl_A          448 SDISKAQLIAYLSKHLAKY-----KVPKHFEKVDTLPYTSTGKLQ  487 (501)
T ss_dssp             SCCCHHHHHHHHHHHSCGG-----GSCSEEEECSSCC--------
T ss_pred             CCCCHHHHHHHHHhhCccc-----cCCCEEEEecccCCCCCCCEe
Confidence            4467889999999999998     578899999999999999985

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3.1e-49  Score=432.48  Aligned_cols=333  Identities=15%  Similarity=0.145  Sum_probs=272.4

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec-----
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT-----  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~-----  103 (467)
                      -.+++|+|||||||.||||+++|..      ......++++++|++++..|++|+++.. ..+.+|..|+++++.     
T Consensus       262 ~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~  341 (663)
T 1ry2_A          262 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPA  341 (663)
T ss_dssp             TSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTT
T ss_pred             CCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCC
Confidence            3456999999999999999999981      1233457899999999999999999984 456789999998884     


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|+++..+.+...+.                               .            
T Consensus       342 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-------------------------------~------------  378 (663)
T 1ry2_A          342 YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY-------------------------------I------------  378 (663)
T ss_dssp             SSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS-------------------------------S------------
T ss_pred             CCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc-------------------------------c------------
Confidence              4678999999999999999999998886521000                               0            


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC---Cceeeccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG---VKVQVGYGLTESSPVI  257 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g---~~v~~~YG~TE~~~~~  257 (467)
                                                    -..+++++|.+++||+++++++.+++. .+|   +++++.||+||+++.+
T Consensus       379 ------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~  428 (663)
T 1ry2_A          379 ------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL  428 (663)
T ss_dssp             ------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCS
T ss_pred             ------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCee
Confidence                                          003567789999999999999966655 567   8999999999998766


Q ss_pred             cccCC---CCCCCCcccccCCCeEEEEEeCCCCcccCC-CCceEEEEeC--CCcCcccCCCccccccccCC--CCeeecc
Q 012261          258 AARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTG  329 (467)
Q Consensus       258 ~~~~~---~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~-g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~~--~gw~~TG  329 (467)
                      +...+   ...+++++|.|+++++++|+|++++++++. |+.|||+++|  |+++.|||++++.+...+..  +|||+||
T Consensus       429 ~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG  508 (663)
T 1ry2_A          429 VTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG  508 (663)
T ss_dssp             EECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE
T ss_pred             eccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC
Confidence            65543   234679999999999999999658999998 9999999999  58999999999998887744  8999999


Q ss_pred             cEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChH
Q 012261          330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  405 (467)
Q Consensus       330 D~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~  405 (467)
                      |+|++++          ||.++|.||+||+||+ +|++|+|.|||++|.+||.|.+++|+|.+++    .+.|+|+++++
T Consensus       509 Dlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~  577 (663)
T 1ry2_A          509 DGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK  577 (663)
T ss_dssp             EEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--
T ss_pred             CEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCC
Confidence            9999999          9999999999999997 8999999999999999999999999998653    58899998765


Q ss_pred             HHHHHHHHccccccC-ccc--CCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          406 EVLMAAKRLSIVHAD-ASE--LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       406 ~~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ....         .. ..+  -..++++++++++|..|     .+|+.|+++++.|.+.+||+.
T Consensus       578 ~~~~---------~~~~~~~~~l~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~T~sGKi~  627 (663)
T 1ry2_A          578 SSWS---------TATDDELQDIKKHLVFTVRKDIGPF-----AAPKLIILVDDLPKTRSGKIM  627 (663)
T ss_dssp             -------------------CCSHHHHHHHHHHHHTCTT-----TSCSEEEECSCCCBCTTSCBC
T ss_pred             Cccc---------cccchhHHHHHHHHHHHHHHhCCCC-----cCCeEEEEcCCCCCCCccCch
Confidence            2100         00 000  11456777777777777     588999999999999999984

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=9.4e-49  Score=417.21  Aligned_cols=325  Identities=21%  Similarity=0.289  Sum_probs=260.2

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhhH------hhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec----C
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQIR------SLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----A  104 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~~------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~----~  104 (467)
                      -.+++|+|||||||.||+|+++|+..      .....+++.++|++++++|++|.+++... +.++..|+++++.    +
T Consensus       183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~  262 (529)
T 2v7b_A          183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT  262 (529)
T ss_dssp             TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCC
T ss_pred             CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Confidence            34569999999999999999999832      12234678899999999999999998754 5679999999974    6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.++++++|++.++|+++..+.+....     +                         .                
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~-------------------------~----------------  296 (529)
T 2v7b_A          263 ADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P-------------------------A----------------  296 (529)
T ss_dssp             HHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C-------------------------C----------------
T ss_pred             HHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c-------------------------c----------------
Confidence            88999999999999999999999888652000     0                         0                


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                   ....++|.+++||+++++++.+. .+.+|+++++.||+||+++..+.+...
T Consensus       297 -----------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  347 (529)
T 2v7b_A          297 -----------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG  347 (529)
T ss_dssp             -----------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTT
T ss_pred             -----------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccC
Confidence                                         10125699999999999999554 456799999999999997766665554


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....+++|.|+++++++++| ++++++|+|+.|||+++|++++.|||++++.|...| .+|||+|||+|++++       
T Consensus       348 ~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~-------  418 (529)
T 2v7b_A          348 AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLP-------  418 (529)
T ss_dssp             CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-------
T ss_pred             CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECC-------
Confidence            46778999999999999999 679999999999999999999999999999999998 489999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC---CceEEEEecChHHHHHHHHHccccccC
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                         +|.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++...   +.+.++|+++++.             .
T Consensus       419 ---~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~-------------~  481 (529)
T 2v7b_A          419 ---NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF-------------A  481 (529)
T ss_dssp             ---TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C
T ss_pred             ---CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC-------------C
Confidence               9999999999999997 999999999999999999999999999822   3467888876431             0


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ..+...++++++++++|+.|     +.|+.|.++++.|.+.+||+.
T Consensus       482 ~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  522 (529)
T 2v7b_A          482 PSEILAEELKAFVKDRLAPH-----KYPRDIVFVDDLPKTATGKIQ  522 (529)
T ss_dssp             CCHHHHHHHHHHHHTTSCTT-----TSCSEEEEESCCCBCTTSCBC
T ss_pred             cchhHHHHHHHHHHhhcchh-----hCCeEEEEeccCCCCCccchh
Confidence            00112345666666666666     578999999999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.2e-48  Score=421.04  Aligned_cols=322  Identities=20%  Similarity=0.290  Sum_probs=274.1

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~  106 (467)
                      .+++|+|||||||.||||+++|+     +......+++.++|++++++|++|.++...  .+.++..|+++++.   ++.
T Consensus       185 ~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  264 (617)
T 3rg2_A          185 EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSAT  264 (617)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHH
T ss_pred             CeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHH
Confidence            45699999999999999999998     334455678999999999999999999874  56779999999995   578


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+......                                                
T Consensus       265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------  296 (617)
T 3rg2_A          265 LCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------------------------------------  296 (617)
T ss_dssp             HHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC------------------------------------------------
T ss_pred             HHHHHHHHhCCcEEEcchHHHHHHHHhhhccc------------------------------------------------
Confidence            89999999999999999999999877432210                                                


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCC-
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTC-  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  264 (467)
                                               ....++++|.+++||+++++++. ++.+.+|+++++.||+||++.......... 
T Consensus       297 -------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  351 (617)
T 3rg2_A          297 -------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE  351 (617)
T ss_dssp             -------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred             -------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence                                     01356677999999999999985 455577999999999999986554433221 


Q ss_pred             CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....++|.|+ ++.+++++| ++++++|.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++       
T Consensus       352 ~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~-------  423 (617)
T 3rg2_A          352 KIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP-------  423 (617)
T ss_dssp             HHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred             ccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC-------
Confidence            2345789997 788999999 7799999999999999999999999999999999999999999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||.+++.||+||+||+ +|++|+|.|||+.|.+||+|.+++|++.+++    .+.+++++.                
T Consensus       424 ---dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~----------------  483 (617)
T 3rg2_A          424 ---EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK----------------  483 (617)
T ss_dssp             ---TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES----------------
T ss_pred             ---CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeC----------------
Confidence               9999999999999996 9999999999999999999999999997654    466777775                


Q ss_pred             CcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++.+++++ .|+.|     ..|+.|.++++.|.+.|||++
T Consensus       484 --~~~~~~~l~~~l~~~~lp~~-----~vP~~~~~v~~lP~t~~GKid  524 (617)
T 3rg2_A          484 --EPLRAVQVRRFLREQGIAEF-----KLPDRVECVDSLPLTAVGKVD  524 (617)
T ss_dssp             --SCCCHHHHHHHHHTTTCCGG-----GSCSEEEECSCCCBCTTSSBC
T ss_pred             --CCCCHHHHHHHHHhCCCccc-----cCCcEEEEecccCCCCCCCCc
Confidence              23567788888887 57777     578899999999999999985

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.4e-49  Score=418.67  Aligned_cols=316  Identities=22%  Similarity=0.286  Sum_probs=191.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHh-hcCceEEec--CHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF-SRGIELMYT--AVRNL  108 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l-~~G~~~v~~--~~~~l  108 (467)
                      .+++|+|||||||.||+|+++|+     +......++++++|++++++|++|++++...+.++ ..|+.++..  ++..+
T Consensus       161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~  240 (509)
T 3ivr_A          161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQA  240 (509)
T ss_dssp             SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH
T ss_pred             ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHH
Confidence            44599999999999999999998     33445667899999999999999999998777764 445555543  78999


Q ss_pred             HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261          109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  188 (467)
Q Consensus       109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (467)
                      ++.++++++|++.++|+++..+.+...                                                     
T Consensus       241 ~~~i~~~~~t~~~~~p~~~~~l~~~~~-----------------------------------------------------  267 (509)
T 3ivr_A          241 ARDIEAHKVTVMAEFAPMLGNILDQAA-----------------------------------------------------  267 (509)
T ss_dssp             HHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------------
T ss_pred             HHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------------
Confidence            999999999999999999999876310                                                     


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHh-CCceeeccccccccccccccCCCCCCC
Q 012261          189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVL  267 (467)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~  267 (467)
                                              ...++.+|.++++|++  ....++.+.+ ++++++.||+||+++..+..... ...
T Consensus       268 ------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~  320 (509)
T 3ivr_A          268 ------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRP  320 (509)
T ss_dssp             ------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GST
T ss_pred             ------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCC
Confidence                                    1455667999999988  3346666677 99999999999999876665433 234


Q ss_pred             CcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccC
Q 012261          268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG  347 (467)
Q Consensus       268 g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~  347 (467)
                      .++|.|+++++++++| +.+++++.|+.|||+++|++++.|||++|+.|...| .+|||+|||+|++++          |
T Consensus       321 ~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~----------d  388 (509)
T 3ivr_A          321 KSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDA----------D  388 (509)
T ss_dssp             TSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECT----------T
T ss_pred             CcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECC----------C
Confidence            5699999999999999 558999999999999999999999999999999999 489999999999999          9


Q ss_pred             ceEEEEccC--CCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261          348 GVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA  421 (467)
Q Consensus       348 G~l~i~GR~--~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~  421 (467)
                      |.+++.||+  ||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++.    +.++|+++++                
T Consensus       389 G~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~----------------  451 (509)
T 3ivr_A          389 GYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG----------------  451 (509)
T ss_dssp             SCEEEEEEC-----------------------------------------------------------------------
T ss_pred             ceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------------
Confidence            999999999  999996 99999999999999999999999999987764    5577776543                


Q ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       452 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKid  491 (509)
T 3ivr_A          452 ESIAADALAEFVASLIARY-----KKPKHVVFVEALPKDAKGAID  491 (509)
T ss_dssp             ---------------------------------------------
T ss_pred             CCCCHHHHHHHHHhhCccc-----CCCcEEEEecCCCCCCCCCcc
Confidence            3456678999999999999     578899999999999999985

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=7.5e-49  Score=417.01  Aligned_cols=326  Identities=17%  Similarity=0.163  Sum_probs=261.4

Q ss_pred             CCCceEEEeeeCCCCCCcceehhhhh-----Hhhhc--ccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----
Q 012261           35 DLPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYD--IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  103 (467)
Q Consensus        35 ~~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~--~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----  103 (467)
                      .-.+++|+|||||||.||+|+++|+.     .....  .++..++|+++...|++|.++....+.++..|+++++.    
T Consensus       144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~  223 (521)
T 3l8c_A          144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKEL  223 (521)
T ss_dssp             TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGG
T ss_pred             CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHH
Confidence            34567999999999999999999981     11222  26778899999999999999887777789999999885    


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..+++.++++++|++.++|+++..+......                                             
T Consensus       224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------  258 (521)
T 3l8c_A          224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF---------------------------------------------  258 (521)
T ss_dssp             TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC---------------------------------------------
T ss_pred             hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc---------------------------------------------
Confidence              577899999999999999999999877541000                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccc
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  259 (467)
                                                    ....++++|.+++||+++++++ +++.+.+ ++++++.||+||+++..+.
T Consensus       259 ------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  308 (521)
T 3l8c_A          259 ------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSA  308 (521)
T ss_dssp             ------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEE
T ss_pred             ------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhce
Confidence                                          0134667799999999999998 5556677 8999999999999877665


Q ss_pred             cCCC-----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc---CCCCeeecccE
Q 012261          260 RRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDI  331 (467)
Q Consensus       260 ~~~~-----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~---~~~gw~~TGD~  331 (467)
                      ....     ....+++|.|.++++++++| +++++++.|+.|||+++|++++.|||++|+.|...|   +++|||+|||+
T Consensus       309 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl  387 (521)
T 3l8c_A          309 IEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDI  387 (521)
T ss_dssp             EEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred             eecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCE
Confidence            4322     13567899999999999999 669999999999999999999999999999999987   56789999999


Q ss_pred             EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC-----CceEEEEecChHH
Q 012261          332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIVPDKEE  406 (467)
Q Consensus       332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-----~~~~a~vv~~~~~  406 (467)
                      |++++          +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++..+     +.+.|+|+++++.
T Consensus       388 g~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~  456 (521)
T 3l8c_A          388 GSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV  456 (521)
T ss_dssp             EEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred             EEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence            99999          9999999999999997 899999999999999999999999998643     3577889887542


Q ss_pred             HHHHHHHccccccCcccCC-----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          407 VLMAAKRLSIVHADASELS-----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      .              ...+     .++++++++++|+.|     ..|+.|.++++.|.+.+||++
T Consensus       457 ~--------------~~~~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GKid  502 (521)
T 3l8c_A          457 K--------------ERFDRELELTKAIKASVKDHMMSY-----MMPSKFLYRDSLPLTPNGKID  502 (521)
T ss_dssp             G--------------GGCSSHHHHHHHHHHHSGGGSCGG-----GSCSEEEECSSCCBCTTSSBC
T ss_pred             c--------------cccccchhhHHHHHHHHHhhCccc-----cCCeEEEEecccCCCCCcCcc
Confidence            0              1111     345666666666666     577899999999999999985

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3.9e-48  Score=420.69  Aligned_cols=314  Identities=16%  Similarity=0.103  Sum_probs=260.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AVRN  107 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~~~  107 (467)
                      .+++|+|||||||.||||+++|+.    ......+++.++|++++++|++|.++....+.++..|+++++.     ++..
T Consensus       165 d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  244 (620)
T 4dg8_A          165 QIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGV  244 (620)
T ss_dssp             SEEEEEEEBSSSSSCEEEEEEHHHHHHHHSSCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHH
T ss_pred             CeEEEEECCCccccCeEEEEchHHHHHHHHHHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHH
Confidence            456999999999999999999982    1223456788999999999999999988888889999999984     5889


Q ss_pred             HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261          108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  187 (467)
Q Consensus       108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (467)
                      +++.++++++|++.++|+++..+.+..                                                     
T Consensus       245 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----------------------------------------------------  271 (620)
T 4dg8_A          245 LRQLIGERGADSAWLTASLFNTLVDLD-----------------------------------------------------  271 (620)
T ss_dssp             HHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------------
T ss_pred             HHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------------
Confidence            999999999999999999998886510                                                     


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCCC--
Q 012261          188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT--  263 (467)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~--  263 (467)
                                               ...++++|.+++||+++++++ .++.+.+ ++++++.||+||++...+.....  
T Consensus       272 -------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  326 (620)
T 4dg8_A          272 -------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD  326 (620)
T ss_dssp             -------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG
T ss_pred             -------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc
Confidence                                     034566799999999999776 6666665 89999999999998766543321  


Q ss_pred             --CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC-------CeeecccEEEE
Q 012261          264 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNTGDIGWI  334 (467)
Q Consensus       264 --~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~-------gw~~TGD~~~~  334 (467)
                        ....+++|.|+++++++|+|++....+|.|+.|||+++|++++.|||++|+.|...|..+       +||+|||+|++
T Consensus       327 ~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~  406 (620)
T 4dg8_A          327 DLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY  406 (620)
T ss_dssp             GGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence              235679999999999999995544448999999999999999999999999999998653       79999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEE---EEecChHHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA---IIVPDKEEVLMAA  411 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a---~vv~~~~~~~~~~  411 (467)
                      ++          ||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++....   +++...       
T Consensus       407 ~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~-------  468 (620)
T 4dg8_A          407 DE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA-------  468 (620)
T ss_dssp             CT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-------
T ss_pred             CC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-------
Confidence            99          9999999999999998 99999999999999999999999999987665443   333221       


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                     +.+.+.+.++|+.|     ..|+.|.++++.|.+.|||++
T Consensus       469 ---------------~~~~~~l~~~Lp~y-----~~P~~~~~v~~lP~t~~GKid  503 (620)
T 4dg8_A          469 ---------------DASPQALLRQLPTW-----QRPHACVRVEALPLTAHGKLD  503 (620)
T ss_dssp             ---------------TCCCHHHHHHSCGG-----GSCSEEEECSSCCCC----CC
T ss_pred             ---------------HHHHHHHHHhChhh-----cCCcEEEEECcCCCCcccCHh
Confidence                           12335566778888     578899999999999999985

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.3e-48  Score=444.98  Aligned_cols=324  Identities=25%  Similarity=0.365  Sum_probs=203.5

Q ss_pred             CCceEEEeeeCCCCCCcceehhhhh-----Hhhh----cccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLY----DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~----~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~--  103 (467)
                      -.+++|+|||||||.||+|+++|+.     ....    ..+++.++|++++++|++|++++... +.++..|+++++.  
T Consensus       225 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~  304 (979)
T 3tsy_A          225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK  304 (979)
T ss_dssp             TSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSS
T ss_pred             cceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCC
Confidence            3456999999999999999999981     1111    24567889999999999999998655 5569999999985  


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..+.+.....                                             
T Consensus       305 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  339 (979)
T 3tsy_A          305 FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE---------------------------------------------  339 (979)
T ss_dssp             CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG---------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc---------------------------------------------
Confidence             6889999999999999999999999887621100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh-CCceeecccccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAAR  260 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~  260 (467)
                                                    ..+++++|.+++||+++++++.+.+ +.+ ++++++.||+||++++.+.+
T Consensus       340 ------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~  389 (979)
T 3tsy_A          340 ------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS  389 (979)
T ss_dssp             ------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEEC
T ss_pred             ------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhC
Confidence                                          1346677999999999999985554 566 89999999999999765543


Q ss_pred             C-----CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261          261 R-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  335 (467)
Q Consensus       261 ~-----~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~  335 (467)
                      .     +.....+++|.|+++++++|+|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|+++
T Consensus       390 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~  469 (979)
T 3tsy_A          390 LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID  469 (979)
T ss_dssp             GGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             CCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc
Confidence            2     22346789999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  411 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  411 (467)
                      +          ||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++    .+.++|+++++      
T Consensus       470 ~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~------  532 (979)
T 3tsy_A          470 D----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD------  532 (979)
T ss_dssp             T----------TSCEEEEEESCC---------------------------------------------------------
T ss_pred             C----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC------
Confidence            9          9999999999999997 9999999999999999999999999997664    45677776543      


Q ss_pred             HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                ...+.++++++++++|+.|     ..|+.|.++++.|.+.+||+.
T Consensus       533 ----------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~lP~t~~GKi~  572 (979)
T 3tsy_A          533 ----------SELSEDDVKQFVSKQVVFY-----KRINKVFFTESIPKAPSGKIL  572 (979)
T ss_dssp             -------------------------------------------------------
T ss_pred             ----------CCCCHHHHHHHHHHhcccc-----cCCeEEEEeCCcCcCCCCCee
Confidence                      3456678999999999999     578899999999999999985

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.3e-46  Score=405.17  Aligned_cols=327  Identities=17%  Similarity=0.227  Sum_probs=263.2

Q ss_pred             CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec------
Q 012261           36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT------  103 (467)
Q Consensus        36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~------  103 (467)
                      -.+++|+|||||||.||||+++|+     +......++++++|++++++|++|++++.. .+.++..|+++++.      
T Consensus       167 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~  246 (590)
T 3kxw_A          167 NDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFL  246 (590)
T ss_dssp             TSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHH
T ss_pred             CCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHH
Confidence            345799999999999999999998     334455678999999999999999999986 56779999999985      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|.++..+.+.+.....                                           
T Consensus       247 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------------------------------  283 (590)
T 3kxw_A          247 QNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-------------------------------------------  283 (590)
T ss_dssp             HCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------------------------------------
T ss_pred             HCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------------------------------------
Confidence             467889999999999999999999888763221100                                           


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh------CCceeeccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI------GVKVQVGYGLTESSP  255 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~------g~~v~~~YG~TE~~~  255 (467)
                                                   ...+++++|.+++||+++++++. ++.+.+      +.++++.||+||+++
T Consensus       284 -----------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  334 (590)
T 3kxw_A          284 -----------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATL  334 (590)
T ss_dssp             -----------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSS
T ss_pred             -----------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence                                         01356677999999999999984 455565      247999999999998


Q ss_pred             cccccCCC---------------------------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcc
Q 012261          256 VIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG  308 (467)
Q Consensus       256 ~~~~~~~~---------------------------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~g  308 (467)
                      ..+.....                           ....+++|.|+++  ++|+|++++.+++.|+.|||+++|++++.|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~G  412 (590)
T 3kxw_A          335 LVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKG  412 (590)
T ss_dssp             EEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCC
T ss_pred             eeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCccccc
Confidence            76654321                           1234688999988  888998889999999999999999999999


Q ss_pred             cCCCccccccccCC------CC--eeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHH-Hc
Q 012261          309 YFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-LR  379 (467)
Q Consensus       309 Y~~~~~~t~~~~~~------~g--w~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l-~~  379 (467)
                      ||++|+.|..+|..      +|  ||+|||+|+++           +|.++|.||+||+||+ +|++|+|.|||++| ..
T Consensus       413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~  480 (590)
T 3kxw_A          413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHS  480 (590)
T ss_dssp             BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHS
T ss_pred             ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhc
Confidence            99999999999854      25  99999999998           4899999999999997 99999999999999 78


Q ss_pred             CcCcc--eEEEEeeCCC---ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEE
Q 012261          380 SSLIR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHV  453 (467)
Q Consensus       380 ~p~V~--~~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~  453 (467)
                      +|.|.  +++|++.+++   .+.+++++.++.              ....+.+++.+++++.|.++.    ..+. .+.+
T Consensus       481 ~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~----~~p~~~i~~  542 (590)
T 3kxw_A          481 PLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENH----QLEVHTIVL  542 (590)
T ss_dssp             GGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHH----SCCCCEEEE
T ss_pred             CccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHc----CCceeEEEE
Confidence            99998  8999987543   456777765431              023456789999999998631    2332 5666


Q ss_pred             e--CCCCCCCCCccC
Q 012261          454 V--DEPFTVNFLCLA  466 (467)
Q Consensus       454 ~--~~~~~~~~g~~~  466 (467)
                      +  ++.|.+.+||+.
T Consensus       543 v~~~~lP~t~sGKi~  557 (590)
T 3kxw_A          543 IPLKAMPHTTSGKIR  557 (590)
T ss_dssp             EETTCSCCCSCHHHH
T ss_pred             ECCCccCcCCCcHHH
Confidence            6  699999999973

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2e-46  Score=402.07  Aligned_cols=330  Identities=15%  Similarity=0.089  Sum_probs=190.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhhh-----Hhhh--------cccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLY--------DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~--------~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~  103 (467)
                      .+++|+|||||||.||||+++|+.     ..+.        ..+.+...++++++.|++|.++....+.++..|+++++.
T Consensus       176 ~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  255 (562)
T 3ite_A          176 LDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTG  255 (562)
T ss_dssp             SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred             CcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEec
Confidence            347999999999999999999981     1111        124577889999999999998887778889999999986


Q ss_pred             C----HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261          104 A----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  179 (467)
Q Consensus       104 ~----~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (467)
                      +    +..+++.++++++|++.++|+++..+...                                              
T Consensus       256 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------------------------------------  289 (562)
T 3ite_A          256 ERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------------------------------------  289 (562)
T ss_dssp             CHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------------------------------
T ss_pred             chhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------------------------------
Confidence            3    46678899999999999999987654220                                              


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeecccccccccccc
Q 012261          180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIA  258 (467)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~  258 (467)
                                                       ..+++++|.+++||+++++++.+.++ .+++++++.||+||++..++
T Consensus       290 ---------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  336 (562)
T 3ite_A          290 ---------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCS  336 (562)
T ss_dssp             ---------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSE
T ss_pred             ---------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeee
Confidence                                             03556779999999999999966555 45899999999999987665


Q ss_pred             ccCC-CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCC--eeecccEEEEc
Q 012261          259 ARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDIGWIA  335 (467)
Q Consensus       259 ~~~~-~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~g--w~~TGD~~~~~  335 (467)
                      .... .....+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.+...+ .+|  ||+|||+|+++
T Consensus       337 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d  415 (562)
T 3ite_A          337 AGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMD  415 (562)
T ss_dssp             EEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEEC
T ss_pred             eeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEc
Confidence            5443 3346789999999999999998899999999999999999999999999999988765 355  99999999999


Q ss_pred             CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcC-cCcceEEEEeeCCCce----EEEEecChH-HHHH
Q 012261          336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRP----GAIIVPDKE-EVLM  409 (467)
Q Consensus       336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~-p~V~~~~Vvg~~~~~~----~a~vv~~~~-~~~~  409 (467)
                      +          ||.++|.||+||+||+ +|++|+|.|||++|.++ |.+.+++|++.+++..    .+.++...+ ....
T Consensus       416 ~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~  484 (562)
T 3ite_A          416 A----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG  484 (562)
T ss_dssp             T----------TSCEEEEEEC-----------------------------------------------------------
T ss_pred             C----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc
Confidence            9          9999999999999997 99999999999999998 8888999998766532    233333222 1110


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCC-CCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~-~~g~~~  466 (467)
                      ...   . .........++++++++++|+.|     ..|+.|.++++.|.+ .+||+.
T Consensus       485 ~~~---~-~~~~~~~~~~~l~~~~~~~L~~y-----~~P~~i~~v~~lP~t~~~GKi~  533 (562)
T 3ite_A          485 ELR---W-INENYKEINNSLRQACEQTLPAY-----MVPDFIIPISFIPLRDTSAKTD  533 (562)
T ss_dssp             ----------------------------------------------------------
T ss_pred             ccc---c-cccchhhHHHHHHHHHHhhCCcc-----cCCcEEEEeccCCCCCCCCcch
Confidence            000   0 00111223458999999999999     688899999999966 899985

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.9e-45  Score=426.26  Aligned_cols=317  Identities=19%  Similarity=0.213  Sum_probs=272.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-hH---hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-IR---SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-~~---~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~~  106 (467)
                      .+++|+|||||||.||||+++|+ +.   .....++++++|+++.+.|++|..+....+.++..|+++++.      ++.
T Consensus       608 ~~ayiiyTSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~  687 (1304)
T 2vsq_A          608 DPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTE  687 (1304)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEHHHHHHHHSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHH
T ss_pred             CeEEEEeCCCCCCCCCEEEEehHHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHH
Confidence            45699999999999999999998 22   223446788999999999999999887778889999999995      477


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .+++.++++++|++.++|+++..+.+..       .                                            
T Consensus       688 ~l~~~i~~~~vt~~~~~p~~~~~l~~~~-------~--------------------------------------------  716 (1304)
T 2vsq_A          688 RLTDLILQENVNVMFATTALFNLLTDAG-------E--------------------------------------------  716 (1304)
T ss_dssp             HHHHHHHHHTCCEEEEEHHHHHHHHHHC-------S--------------------------------------------
T ss_pred             HHHHHHHHcCCcEEEccHHHHHHHHhhc-------h--------------------------------------------
Confidence            8999999999999999999998886520       0                                            


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCC--
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP--  262 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~--  262 (467)
                                                 ..++++|.+++||++++.++ .++.+.+ +.++++.||+||++..++....  
T Consensus       717 ---------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~  769 (1304)
T 2vsq_A          717 ---------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHD  769 (1304)
T ss_dssp             ---------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCC
T ss_pred             ---------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccC
Confidence                                       12234599999999999887 6666666 4789999999999876665432  


Q ss_pred             --CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC------CCeeecccEEEE
Q 012261          263 --TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDIGWI  334 (467)
Q Consensus       263 --~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~------~gw~~TGD~~~~  334 (467)
                        ......++|.|+++++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|..+|..      ++||+|||+|++
T Consensus       770 ~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~  848 (1304)
T 2vsq_A          770 LPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARW  848 (1304)
T ss_dssp             CCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEE
T ss_pred             ccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEE
Confidence              223457899999999999999 66899999999999999999999999999999988842      459999999999


Q ss_pred             cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHH
Q 012261          335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMA  410 (467)
Q Consensus       335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~  410 (467)
                      ++          ||.++++||+||+||+ +|++|+|.|||.+|.+||+|.+++|++.++    ..++|+|+.+       
T Consensus       849 ~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~-------  910 (1304)
T 2vsq_A          849 LP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR-------  910 (1304)
T ss_dssp             CT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS-------
T ss_pred             cC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC-------
Confidence            99          9999999999999998 999999999999999999999999999754    4677888875       


Q ss_pred             HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                 ...+.+++++++++.|+.|     ..|+.|.++++.|.+.|||++
T Consensus       911 -----------~~~~~~~l~~~l~~~Lp~y-----mvP~~~~~l~~lP~t~~GKid  950 (1304)
T 2vsq_A          911 -----------TQLSAEDVKAHLKKQLPAY-----MVPQTFTFLDELPLTTNGKVN  950 (1304)
T ss_dssp             -----------SSSCHHHHHHHHHHHSCGG-----GSCSEEEEESCCCCCSSCSSC
T ss_pred             -----------CCCCHHHHHHHHHHhChHh-----hhccEEEEecccCCCCCcccC
Confidence                       2356788999999999999     578899999999999999985

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.3e-46  Score=378.00  Aligned_cols=293  Identities=13%  Similarity=0.073  Sum_probs=244.8

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-CHHHHHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNLKD  110 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-~~~~l~~  110 (467)
                      .|++|+|||||||.||||++||+     +......++++++|++++++|++|++++...+.++..|+++++. +..++++
T Consensus        38 ~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~~~  117 (358)
T 4gs5_A           38 AREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANPLA  117 (358)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCTTT
T ss_pred             CCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccHHH
Confidence            57899999999999999999998     34555678999999999999999999998888889999998885 3455678


Q ss_pred             HHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHH
Q 012261          111 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  190 (467)
Q Consensus       111 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (467)
                      .++++++|++.++|+++..+.+....                                                      
T Consensus       118 ~i~~~~~t~~~~~P~~l~~ll~~~~~------------------------------------------------------  143 (358)
T 4gs5_A          118 GLDHADFDFVAMVPMQLQSILENSAT------------------------------------------------------  143 (358)
T ss_dssp             TCSSCCCSEEEECHHHHHHHHHCTTT------------------------------------------------------
T ss_pred             HHHHhCCeEEEcChHHHHHhhccccc------------------------------------------------------
Confidence            89999999999999999988762110                                                      


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCCCCCCcc
Q 012261          191 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV  270 (467)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~v  270 (467)
                                            ...++++|.+++||+++++++.+.++.+++++++.||+||+++..+..+......+.+
T Consensus       144 ----------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~  201 (358)
T 4gs5_A          144 ----------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEASEL  201 (358)
T ss_dssp             ----------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCCSC
T ss_pred             ----------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeeccccccccccee
Confidence                                  1345566999999999999998878888999999999999998888877777778999


Q ss_pred             cccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceE
Q 012261          271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL  350 (467)
Q Consensus       271 G~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l  350 (467)
                      |.+.|++++.+.+           .|||+++|+.                ..+|||+|||+|++++          || +
T Consensus       202 ~~~~pgv~~~~~~-----------~Gel~~~g~~----------------~~~g~~~TGDlg~~d~----------~g-~  243 (358)
T 4gs5_A          202 YVFLPGIQYGVDE-----------RGCLHISGAV----------------TNGQTVQTNDLVEIHG----------NA-F  243 (358)
T ss_dssp             EEECTTCEEEECT-----------TSEEEEESGG----------------GTTCCEEEEEEEEECS----------SE-E
T ss_pred             eccCCCeEEEecC-----------cCceEEeccc----------------ccCcceecCCcccccc----------Cc-e
Confidence            9999999888743           6999998752                1578999999999998          78 6


Q ss_pred             EEEccCCCeeeeCCceeeccHHHHHHHH---cCcCcceEEEE-eeCCCc----eEEEEecChHHHHHHHHHccccccCcc
Q 012261          351 VLEGRAKDTIVLSTGENVEPLELEEAAL---RSSLIRQIVVI-GQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADAS  422 (467)
Q Consensus       351 ~i~GR~~d~i~~~~G~~v~p~eIE~~l~---~~p~V~~~~Vv-g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~  422 (467)
                      .++||+||+||+ +|++|+|.|||+.|.   +||.|.+++|+ +.+++.    +.++|+.+..                 
T Consensus       244 ~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-----------------  305 (358)
T 4gs5_A          244 QWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-----------------  305 (358)
T ss_dssp             EEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-----------------
T ss_pred             EEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-----------------
Confidence            667999999996 999999999998874   68999999887 555543    4566655432                 


Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          423 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       423 ~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      +...++++++++++|+.|     ++|++|.++++.|.+.+||+.
T Consensus       306 ~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~  344 (358)
T 4gs5_A          306 EALTERLTAEIRSRVSTY-----ENPKHIYFAKAFAKTQTDKID  344 (358)
T ss_dssp             HHHHHHHHHHHHHHSCGG-----GSCSCEEEESSCCBCTTSCBC
T ss_pred             CcCHHHHHHHHHhhCCCC-----CCceEEEEECCcCCCCCCChh
Confidence            234567899999999888     688899999999999999985

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1.6e-42  Score=360.51  Aligned_cols=320  Identities=14%  Similarity=0.074  Sum_probs=243.3

Q ss_pred             ceEEEeeeCCCCCCcceehhhhh-----Hhh---hcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQI-----RSL---YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AV  105 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~~-----~~~---~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~  105 (467)
                      ++.|+|||||||.||+|+++|..     ...   ...+++.++|++++++|++|..+... .+.++..|+++++.   ++
T Consensus        88 ~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  167 (436)
T 3qov_A           88 GVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNS  167 (436)
T ss_dssp             EEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCH
T ss_pred             eEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCH
Confidence            36899999999999999999981     111   23458899999999999976666554 45669999999885   58


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..+++.+++++||++.++|+++..|.+.......                                              
T Consensus       168 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  201 (436)
T 3qov_A          168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI----------------------------------------------  201 (436)
T ss_dssp             HHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred             HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC----------------------------------------------
Confidence            8999999999999999999999999875433210                                              


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ...++++|.+++||+++++++.+.++ .+|+++++.||+||+++..+..... 
T Consensus       202 ---------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  253 (436)
T 3qov_A          202 ---------------------------DPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ-  253 (436)
T ss_dssp             ---------------------------CTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT-
T ss_pred             ---------------------------CcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC-
Confidence                                       01245679999999999999965554 6699999999999995442222111 


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC-CCCc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-RGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~-~~~~  343 (467)
                       ....+|.|.++++++++|+++++++++|+.|||+++|.            +...+ .++||+|||+|+++++.| ||+.
T Consensus       254 -~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~  319 (436)
T 3qov_A          254 -EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRT  319 (436)
T ss_dssp             -TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCC
T ss_pred             -CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCC
Confidence             11336778889999999999999999999999999983            22334 578999999999998655 4432


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                      .+  ..+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++    +.+.++|+++ +.            .
T Consensus       320 ~~--~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~------------~  383 (436)
T 3qov_A          320 HL--RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL------------S  383 (436)
T ss_dssp             SC--EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT------------C
T ss_pred             cc--ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc------------c
Confidence            10  025999999999998 999999999999999999999999998764    4677888887 41            0


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~~  466 (467)
                      .....+.+++.+.+++.|+++.    ..+..|.+++  +.|.+. ||+.
T Consensus       384 ~~~~~~~~~l~~~l~~~l~~~~----~~p~~i~~v~~~~lP~t~-GKi~  427 (436)
T 3qov_A          384 TDNYIELEKIRRDIIRQLKDEI----LVTPKVKLVKKGSLPQSE-GKAV  427 (436)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH----SSCCEEEEECTTCCC--------
T ss_pred             ccchhhHHHHHHHHHHHHHHhc----CCceEEEEeCCCcccCcC-Ccce
Confidence            0011125789999999999985    2445889998  899988 9874

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=7.4e-42  Score=356.17  Aligned_cols=313  Identities=17%  Similarity=0.117  Sum_probs=246.3

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-----h---hhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec---C
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-----S---LYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---A  104 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-----~---~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~---~  104 (467)
                      .++.|+|||||||.||+|+++|+..     .   ....++++++|++++.+|+ +|..++...+.++..|+++++.   +
T Consensus        93 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  172 (443)
T 2y4o_A           93 QVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQ  172 (443)
T ss_dssp             GCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSCC
T ss_pred             heEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCCC
Confidence            3458999999999999999999721     1   1225788999999999998 5777776667779999999885   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.+++++||++.++|+++..|.+...+....                                            
T Consensus       173 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------------------------------  208 (443)
T 2y4o_A          173 TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD--------------------------------------------  208 (443)
T ss_dssp             HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------------------------------
T ss_pred             HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------------------------------------------
Confidence            899999999999999999999999998753321100                                            


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccc--cccccC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSP--VIAARR  261 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~--~~~~~~  261 (467)
                                                   ..++++|.+++||+++++++.+.+ +.+|+++++.||+||+++  +...+.
T Consensus       209 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~  259 (443)
T 2y4o_A          209 -----------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECV  259 (443)
T ss_dssp             -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT
T ss_pred             -----------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccC
Confidence                                         123566999999999999996555 467999999999999743  333332


Q ss_pred             CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      ..   ...++.|.+++.++++|+++++++++|+.|||+++|.            +...+ .++||+|||+|++++     
T Consensus       260 ~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~-----  318 (443)
T 2y4o_A          260 ET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTRDLTALLP-----  318 (443)
T ss_dssp             TT---CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEEEEECEEC-----
T ss_pred             CC---CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecCCEEEEcC-----
Confidence            21   1125667789999999988899999999999999973            22334 578999999999998     


Q ss_pred             CccccC-ceE-----EEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecCh--HHHHH
Q 012261          342 RSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK--EEVLM  409 (467)
Q Consensus       342 ~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~--~~~~~  409 (467)
                           + |.+     ++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++    +.+.++|++++  +.   
T Consensus       319 -----~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~---  389 (443)
T 2y4o_A          319 -----PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA---  389 (443)
T ss_dssp             -----CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT---
T ss_pred             -----CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc---
Confidence                 5 765     899999999997 899999999999999999999999888533    45778888875  20   


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEe--CCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~--~~~~~~~~g~~~  466 (467)
                                .....+.+++.++++++|+.+.    ..+..|.++  ++.|.+.+||+.
T Consensus       390 ----------~~~~~~~~~l~~~l~~~l~~~~----~~p~~v~~v~~~~lP~t~~GKi~  434 (443)
T 2y4o_A          390 ----------SVTDGERAALARELQHRIKTMV----GVSSGVTVLAAGGIPATATGKAR  434 (443)
T ss_dssp             ----------TCCHHHHHHHHHHHHHHHHHHT----CCCCEEEEECTTCSCCCTTSCCC
T ss_pred             ----------cchhhHHHHHHHHHHHHHHHHh----CCceEEEEeCCCcccCccCCcce
Confidence                      0012345688999999998873    244578888  499999999974

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=7.2e-42  Score=355.66  Aligned_cols=313  Identities=18%  Similarity=0.129  Sum_probs=245.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH--------hhhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec---C
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR--------SLYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---A  104 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~--------~~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~---~  104 (467)
                      .++.|+|||||||.||+|+++|...        .....++++++|++++.+|+ +|..++...+.++..|++++..   +
T Consensus        91 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  170 (437)
T 2y27_A           91 RISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQ  170 (437)
T ss_dssp             GCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSCC
T ss_pred             HeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCCC
Confidence            3458999999999999999999821        11235788999999999998 6888777777789999999874   6


Q ss_pred             HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261          105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  184 (467)
Q Consensus       105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (467)
                      +..+++.+++++||++.++|+++..|.+..++..                              .+              
T Consensus       171 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------------------~~--------------  206 (437)
T 2y27_A          171 TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG------------------------------LD--------------  206 (437)
T ss_dssp             HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT------------------------------CC--------------
T ss_pred             HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC------------------------------CC--------------
Confidence            8899999999999999999999999987543311                              00              


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccc--cccccC
Q 012261          185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSP--VIAARR  261 (467)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~--~~~~~~  261 (467)
                                                   ..++++|.+++||+++++++.+.+ +.+|+++++.||+||+++  +...++
T Consensus       207 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~  257 (437)
T 2y27_A          207 -----------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECV  257 (437)
T ss_dssp             -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCT
T ss_pred             -----------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecC
Confidence                                         123566999999999999996655 467999999999999843  233232


Q ss_pred             CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261          262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  341 (467)
Q Consensus       262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~  341 (467)
                      ..   ...++.|.+++.++++|+++++++|+|+.|||+++|.            +...+ .++||+|||+|+++++    
T Consensus       258 ~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~----  317 (437)
T 2y27_A          258 ET---KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPG----  317 (437)
T ss_dssp             TT---CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEEEEECEECC----
T ss_pred             CC---CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecCCEEEEeCC----
Confidence            21   1126677899999999988899999999999999972            23334 5789999999999972    


Q ss_pred             CccccCceE-----EEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC----CCceEEEEecChHHHHHHHH
Q 012261          342 RSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDKEEVLMAAK  412 (467)
Q Consensus       342 ~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~~~~~~~~~  412 (467)
                           +|.+     ++.||+||+|++ +|++|+|.+||++|.+||+|.+++|++.+    .+.+.++|+++++.      
T Consensus       318 -----~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~------  385 (437)
T 2y27_A          318 -----TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET------  385 (437)
T ss_dssp             -----SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT------
T ss_pred             -----CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc------
Confidence                 2764     899999999997 99999999999999999999999988853    34677888887531      


Q ss_pred             HccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEe--CCCCCCCCCccC
Q 012261          413 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCLA  466 (467)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~--~~~~~~~~g~~~  466 (467)
                             .....+.+++.++++++|+++.    ..+..|.++  ++.|.+. ||+.
T Consensus       386 -------~~~~~~~~~l~~~l~~~l~~~~----~~p~~v~~v~~~~lP~t~-GKi~  429 (437)
T 2y27_A          386 -------APDTAAIQVAKQALAYDIKSLI----GVTAVINVLPVNGIERSV-GKAR  429 (437)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCSCCCS-SSCC
T ss_pred             -------cchhhhHHHHHHHHHHHHHHhc----CCceEEEEeCCCCccCCC-Ccce
Confidence                   0011345789999999998874    234578888  4888888 9974

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.7e-37  Score=325.54  Aligned_cols=235  Identities=20%  Similarity=0.265  Sum_probs=186.0

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCC------CCEEEEECChhHHHHHHH-hHHHhhcCceEEec-
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~------~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-  103 (467)
                      .+++|+|||||||.||||+++|+     +......+++.+      +|++++++|++|++++.. .+.++..|+++++. 
T Consensus       184 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  263 (480)
T 3t5a_A          184 STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTS  263 (480)
T ss_dssp             SEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECC
T ss_pred             ceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEEC
Confidence            45699999999999999999998     223344456666      899999999999999875 46679999999985 


Q ss_pred             ------CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCC
Q 012261          104 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  177 (467)
Q Consensus       104 ------~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (467)
                            ++..+++.++++++| +..+|+++..+.......    +..                                 
T Consensus       264 ~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~----~~~---------------------------------  305 (480)
T 3t5a_A          264 PVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD----DDM---------------------------------  305 (480)
T ss_dssp             HHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----GGG---------------------------------
T ss_pred             HHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----ccc---------------------------------
Confidence                  567889999999999 889999988876531100    000                                 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC------Cceeecccc
Q 012261          178 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VKVQVGYGL  250 (467)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g------~~v~~~YG~  250 (467)
                                                        ...+++++|.+++||+++++++ .++.+.++      +.+++.||+
T Consensus       306 ----------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          306 ----------------------------------AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             ----------------------------------TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             ----------------------------------cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                              0145677899999999999998 55555663      479999999


Q ss_pred             ccccccccccCCCC-------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCc
Q 012261          251 TESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV  305 (467)
Q Consensus       251 TE~~~~~~~~~~~~-------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~  305 (467)
                      ||++...+......                         ...+++|.|++ ++++|+|++++++++.|+.|||+|+|+++
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v  430 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNV  430 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTS
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCcc
Confidence            99998776654321                         23468999999 99999998889999999999999999999


Q ss_pred             CcccCCCccccccccC-----------CCCeeecccEEEEcCCCCCCCccccCceEEEEcc
Q 012261          306 MQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR  355 (467)
Q Consensus       306 ~~gY~~~~~~t~~~~~-----------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR  355 (467)
                      +.|||++|+.|.++|.           ++|||+|||+|+++           ||.|+|+||
T Consensus       431 ~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR  480 (480)
T 3t5a_A          431 ANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR  480 (480)
T ss_dssp             CCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred             ccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence            9999999999999985           57799999999994           799999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=8.2e-28  Score=244.21  Aligned_cols=233  Identities=16%  Similarity=0.086  Sum_probs=163.2

Q ss_pred             ceEEEeeeCCCCCCcceehhhh-h----H---hhhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec--CHH
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ-I----R---SLYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT--AVR  106 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~-~----~---~~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~--~~~  106 (467)
                      ++.|+|||||||.||+|+++|+ .    .   .....++++++|++++.+|+ +|++++...+.++..|+.++..  ++.
T Consensus        93 ~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~~dp~  172 (369)
T 3hgu_A           93 HPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPR  172 (369)
T ss_dssp             CCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCCCCHH
T ss_pred             cEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECccCChH
Confidence            3689999999999999999998 1    1   23345678899999999999 9999998888889999954442  455


Q ss_pred             -----------------------HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh
Q 012261          107 -----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK  163 (467)
Q Consensus       107 -----------------------~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (467)
                                             .+++.++++++|++.++|+++..|++.....                          
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------------  226 (369)
T 3hgu_A          173 WVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------------  226 (369)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH--------------------------
T ss_pred             HHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh--------------------------
Confidence                                   7777999999999999999999987631100                          


Q ss_pred             hhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HH-HHh-
Q 012261          164 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FY-EAI-  240 (467)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~-~~~-  240 (467)
                                                                       ...++++|.+++||+++++++.+ +. +.+ 
T Consensus       227 -------------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p  257 (369)
T 3hgu_A          227 -------------------------------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILP  257 (369)
T ss_dssp             -------------------------------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCT
T ss_pred             -------------------------------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCC
Confidence                                                             02233459999999999999955 45 456 


Q ss_pred             CCceeeccccccccccccccCCCCCCCCccccc------CCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcc
Q 012261          241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS  314 (467)
Q Consensus       241 g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p------~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~  314 (467)
                      ++++++.||+||+++++..++.     .++|.|      .++++++|+|+++++++|+|+.|||++++.+-         
T Consensus       258 ~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~---------  323 (369)
T 3hgu_A          258 DCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSP---------  323 (369)
T ss_dssp             TSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEET---------
T ss_pred             CcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCc---------
Confidence            8999999999999876644432     147888      99999999998799999999999999987321         


Q ss_pred             ccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCce
Q 012261          315 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  366 (467)
Q Consensus       315 ~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  366 (467)
                         ..+  --.|+|||++...+... |...+....+..++|.++..++ .|.
T Consensus       324 ---~~~--l~ry~tgD~~~~~~~~~-g~~~d~~~~v~~~~~~~~~~~i-~gv  368 (369)
T 3hgu_A          324 ---WAF--YPRVAERDTAIRLPGVS-GFAGDRLADIEPLKISEGRKVI-EGV  368 (369)
T ss_dssp             ---TEE--EEEEEEEEEEEEECCST-TCSSCEEEEEEECC------------
T ss_pred             ---ccc--cccccCCceEEEecCCC-CCcCcccccceeccccCCCcee-eec
Confidence               111  11389999998876322 1111112235556776766665 453

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.98  E-value=1.3e-09  Score=90.83  Aligned_cols=93  Identities=13%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             ccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcccCCHHHH
Q 012261          354 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT  429 (467)
Q Consensus       354 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l  429 (467)
                      .|+||||++ +|.||+|.|||++|.+||+|.++++++.+++    .+.++|++.+..             .......+++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l   66 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL   66 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence            499999997 9999999999999999999999999997654    355667765431             0011123456


Q ss_pred             HHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCcc
Q 012261          430 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  465 (467)
Q Consensus       430 ~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~  465 (467)
                      .+.+++.++.+..-    ...+.+++  +.|++ +||+
T Consensus        67 ~~~i~~~l~~~~gv----~~~v~~v~~~~lPrt-sGKi   99 (109)
T 3lax_A           67 TREITRQLKDEILV----TPRVKLVPKGALPKS-EGKA   99 (109)
T ss_dssp             HHHHHHHHHHHHSS----CCEEEEECTTCSCCC----C
T ss_pred             HHHHHHHHHHHhCC----ccceEEEcCCeecCC-CCCc
Confidence            67777777665421    23577775  67777 6986

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.89  E-value=2.6e-08  Score=106.15  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=90.6

Q ss_pred             eEEEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc--cCCCeEEEEEeCCCC--------
Q 012261          220 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH--PINHTEIKIVDAETN--------  287 (467)
Q Consensus       220 r~i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~--p~~~~~v~i~d~~~~--------  287 (467)
                      .++++||  +.+-...+...+ +.+++ ..|++||.....-.. + ...++..+.  .....-++.++.+..        
T Consensus       308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p-~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~  383 (609)
T 4b2g_A          308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECYFGLNLN-P-MSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS  383 (609)
T ss_dssp             EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCEEEECSC-T-TSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred             EEEccCC--hHHHHHHHHHHcCCCccccCcccccceeeeeecC-C-CCCcccCceeecCCcEEEEEEeccccccccccCC
Confidence            3444444  444433333333 67777 999999974322221 1 111122221  112355667753321        


Q ss_pred             -------cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCee
Q 012261          288 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI  360 (467)
Q Consensus       288 -------~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i  360 (467)
                             .++..|+.+||+++..+   |+|.              |++||+++++.-+.     . ...+.|.||.++++
T Consensus       384 ~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~-----~-~p~i~~~gR~~~~l  440 (609)
T 4b2g_A          384 PPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHN-----S-APQFHFVRRKNVLL  440 (609)
T ss_dssp             CCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEET-----T-EEEEEEEEETTCCB
T ss_pred             CCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCC-----C-CcEEEEEEecCCeE
Confidence                   46778999999998643   4443              99999998873100     0 35899999999999


Q ss_pred             eeCCceeeccHHHHHHHHcC------c--CcceEEEEeeC
Q 012261          361 VLSTGENVEPLELEEAALRS------S--LIRQIVVIGQD  392 (467)
Q Consensus       361 ~~~~G~~v~p~eIE~~l~~~------p--~V~~~~Vvg~~  392 (467)
                      ++ .|++|++.+||+++.+.      .  .|.|..++...
T Consensus       441 ~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~  479 (609)
T 4b2g_A          441 SI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT  479 (609)
T ss_dssp             CS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC
T ss_pred             Ec-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC
Confidence            97 89999999999998732      2  35677666543

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.88  E-value=3e-07  Score=97.59  Aligned_cols=151  Identities=12%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             cCCceE--EEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc-cC-CCeEEEEEeCCC---
Q 012261          216 IGISKA--GVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PI-NHTEIKIVDAET---  286 (467)
Q Consensus       216 l~~lr~--i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~-p~-~~~~v~i~d~~~---  286 (467)
                      -+++++  ++.+| .+.+-...+...+ +++++ ..|++||.... . +......++..+. .. ...-++.++.+.   
T Consensus       301 WPnl~~i~~~~~G-~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~  377 (581)
T 4epl_A          301 FPNAKYVYGIMTG-SMEPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETGE  377 (581)
T ss_dssp             CTTCCCEEEECSG-GGGGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC-----
T ss_pred             CCCCceEEEEeCC-ChHHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEecccccC
Confidence            355542  33333 4444433333333 67777 99999996422 2 2211122222222 11 224455654221   


Q ss_pred             -------CcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCe
Q 012261          287 -------NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT  359 (467)
Q Consensus       287 -------~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~  359 (467)
                             -..+..|+.+||+++..+   |.|.              |++||++++...+.     . ...+.|.||.+++
T Consensus       378 ~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~-----~-~p~~~~~gR~~~~  434 (581)
T 4epl_A          378 GEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYN-----N-TPQLKFICRRNLI  434 (581)
T ss_dssp             --CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEET-----T-EEEEEEEEETTCC
T ss_pred             CCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccC-----C-CcEEEEEeecCCe
Confidence                   157788999999998753   3332              99999998875211     0 2479999999999


Q ss_pred             eeeCCceeeccHHHHHHHHcC------c--CcceEEEEeeCC
Q 012261          360 IVLSTGENVEPLELEEAALRS------S--LIRQIVVIGQDQ  393 (467)
Q Consensus       360 i~~~~G~~v~p~eIE~~l~~~------p--~V~~~~Vvg~~~  393 (467)
                      +++ .|+++++.+||+++.+.      .  .|.|..++.+..
T Consensus       435 l~~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~  475 (581)
T 4epl_A          435 LSI-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS  475 (581)
T ss_dssp             BCS-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS
T ss_pred             EEe-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC
Confidence            997 89999999999998742      2  366777776543

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.87  E-value=9.5e-08  Score=101.56  Aligned_cols=145  Identities=12%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             eEEEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc-cC-CCeEEEEEeCCC--------C
Q 012261          220 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PI-NHTEIKIVDAET--------N  287 (467)
Q Consensus       220 r~i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~-p~-~~~~v~i~d~~~--------~  287 (467)
                      .++++||  +.+-...+...+ +.+++ ..|++||... . .+......+...+. .. ...-++.++.+.        -
T Consensus       303 ~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-g-i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l  378 (581)
T 4eql_A          303 ETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETTF-G-INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDL  378 (581)
T ss_dssp             EEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCEE-E-ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEG
T ss_pred             EEEcCCC--hHHHHHHHHHHcCCCccccCcccccccee-e-eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeCH
Confidence            4555555  433333333333 67777 9999999642 2 22111111122221 11 235567775332        2


Q ss_pred             cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCcee
Q 012261          288 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  367 (467)
Q Consensus       288 ~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  367 (467)
                      ..+..|+.+||+++..+   |.|.              |++||++++..-+.     . ...+.|.||.+|++++ .|++
T Consensus       379 ~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~-----~-~p~i~f~gR~~~~l~~-~Gek  434 (581)
T 4eql_A          379 EDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYN-----N-APQFKFVRRENVVLSI-DSDK  434 (581)
T ss_dssp             GGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEET-----T-EEEEEEEEETTEEECS-SSCC
T ss_pred             HHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCC-----C-CcEEEEEEecCCEEEe-eeeE
Confidence            45668899999998753   3332              99999998874110     0 2589999999999997 8999


Q ss_pred             eccHHHHHHHHcCc--------CcceEEEEeeC
Q 012261          368 VEPLELEEAALRSS--------LIRQIVVIGQD  392 (467)
Q Consensus       368 v~p~eIE~~l~~~p--------~V~~~~Vvg~~  392 (467)
                      +++.+||+++.+.-        .|.|..++...
T Consensus       435 l~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~  467 (581)
T 4eql_A          435 TNEEDLFKAVSQAKLVLESSGLDLKDFTSYADT  467 (581)
T ss_dssp             EEHHHHHHHHHHC--------------CEEEEC
T ss_pred             CCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCC
Confidence            99999999988532        25566665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-34
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-33
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	3e-29
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-24
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-19

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  132 bits (333), Expect = 2e-34
 Identities = 69/356 (19%), Positives = 126/356 (35%), Gaps = 27/356 (7%)

Query: 80  PPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIF 139
                 E         R  E     +          +        LV  +L + +     
Sbjct: 149 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 208

Query: 140 TSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWP 199
            S     +    +  ++     +     G        +      +  +    +      P
Sbjct: 209 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 268

Query: 200 LHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAA 259
              LA     +     +   +  V GG + P  +   +E +GV+V+ GYGLTE+SPV+  
Sbjct: 269 TVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQ 328

Query: 260 RRPTCNV-----------LGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQ 307
                ++               G PI    +++ D E   V     + G V+++G  +  
Sbjct: 329 NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITG 388

Query: 308 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 367
           GY+ N  AT+ AL  DG+  TGDI                G + ++ R KD ++ S GE 
Sbjct: 389 GYYGNEEATRSALTPDGFFRTGDIAVWDE----------EGYVEIKDRLKD-LIKSGGEW 437

Query: 368 VEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKEEVLMAAKRLSIVHA 419
           +  ++LE A +    +++  V+     + Q RP A++VP  E+         ++ A
Sbjct: 438 ISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA 493

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  129 bits (324), Expect = 5e-33
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 169 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS 228
             L    ++  +L +L D+     +             L+ K   S   + +    G   
Sbjct: 259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIASGGAPL 316

Query: 229 LPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 287
                +   +   +  ++ GYGLTE++  I       +  G+VG  +   E K+VD +T 
Sbjct: 317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG 376

Query: 288 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 347
           + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +              
Sbjct: 377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH-------- 428

Query: 348 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPD 403
               +  R K  I    G  V P ELE   L+   I    V G         P A++V +
Sbjct: 429 --FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE 485

Query: 404 KEEVLMAAKRLSIVHADASELSKEKTI 430
             + +   +   IV   AS+++  K +
Sbjct: 486 HGKTMTEKE---IVDYVASQVTTAKKL 509

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  118 bits (297), Expect = 3e-29
 Identities = 50/259 (19%), Positives = 85/259 (32%), Gaps = 49/259 (18%)

Query: 220 KAGVSGGGSLPMH-IDLFYEAIG---VKVQVGYGLTESSPVIAARRPTCNVL--GSVGHP 273
           +   S G  +     + +++ IG     V   +  TE+   +    P    L  GS   P
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 274 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQ--VMQGYFKNPSATKQALDE--DGWLNTG 329
               +  +VD E +      ++G + +  S     +  F +    +Q           +G
Sbjct: 437 FFGVQPALVDNEGHPQ-EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG 495

Query: 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 389
           D                 G   + GR  D + +S G  +   E+E A +    I +  V+
Sbjct: 496 DGARRDED----------GYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVV 544

Query: 390 GQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG 449
           G             K + + A     +      E S E     LY E+R W      +IG
Sbjct: 545 GIPH--------AIKGQAIYAY----VTLNHGEEPSPE-----LYAEVRNW---VRKEIG 584

Query: 450 P------IHVVDE-PFTVN 461
           P      +H  D  P T +
Sbjct: 585 PLATPDVLHWTDSLPKTRS 603

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 4e-24
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 178 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 236
            S    +ID             L LL           ++   +   S G  +   + + +
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381

Query: 237 YEAIG---VKVQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVL 290
            E IG   + +   Y  TES   +             GS   P    +  ++D  T E L
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 441

Query: 291 -PAGSKGIVKVRGS--QVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRR 345
             + ++G++ V+ +     +  +KN             G+  TGD               
Sbjct: 442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD-------- 493

Query: 346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIV 401
             G + + GR  D + +S G  +   E+E A +   ++ +  V+G +     +   A +V
Sbjct: 494 --GYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550

Query: 402 PDKEEVLMAA 411
              +     A
Sbjct: 551 LKNKSSWSTA 560

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 93.2 bits (230), Expect = 6e-21
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 17/260 (6%)

Query: 166 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 225
            +G  +   + +P   + L+       + A    L  LA    +      +   +     
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280

Query: 226 GGSLP-MHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 284
           G ++P   ++  ++ +  +    YG TE+   +  R+P      + G       ++I   
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG 340

Query: 285 ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 344
               V       ++         GY   P AT + L +DGW  T D+    P        
Sbjct: 341 VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE------- 392

Query: 345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AII 400
              G + + GR  D I+   GEN+ P E+E     +  + ++VVIG   +R G    A +
Sbjct: 393 ---GTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448

Query: 401 VPDKEEVLMAAKRLSIVHAD 420
           VP   E L A    +   + 
Sbjct: 449 VPRLGETLSADALDTFCRSS 468

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 90.7 bits (224), Expect = 4e-20
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%)

Query: 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV 246
             + + I      +  L    V       I   +  ++ G +    +   ++   V    
Sbjct: 247 VKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE-KVTYIN 305

Query: 247 GYGLTESSPVIAARRPTCNVLG---SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
            YG TE++        T   +G    +G PI +T+I IVD E  ++   G  G + + G 
Sbjct: 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 364

Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 363
            + +GY+K P  T Q   ++ ++  G+  +     +R       G +   GR  + + + 
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFV-PGEKLYKTGDQAR---WLSDGNIEYLGRIDNQVKIR 420

Query: 364 TGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKE 405
            G  VE  E+E   L+   I +  V      Q+Q    A  V +K 
Sbjct: 421 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 465

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.6 bits (213), Expect = 8e-19
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 178 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY 237
           P     LI+     I   +     +        +      +    V G            
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVW-MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 238 EAIGVKVQVGYGLTESSPVIAARRPTCNV-LGSVGHPINHTEIKIVDAETNEVLPAGSKG 296
              G  +Q  +G+ E             + + + G P++  +   V  + +  +  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 297 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 356
            +  RG   ++GY+K       +  EDG+  TGDI  +             G +V+EGRA
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD----------GYIVVEGRA 429

Query: 357 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 412
           KD I    GE V   E+E   L    +    ++    +    R    I+P  E    A  
Sbjct: 430 KDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488

Query: 413 R 413
           +
Sbjct: 489 K 489

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=9.2e-50  Score=432.68  Aligned_cols=323  Identities=15%  Similarity=0.110  Sum_probs=270.8

Q ss_pred             ceEEEeeeCCCCCCcceehhhh------hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec-------
Q 012261           38 LFSFVLIDLNTWMPIPKMTNFQ------IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-------  103 (467)
Q Consensus        38 ~~~i~~TSGTTG~PK~v~~t~~------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~-------  103 (467)
                      +++|+|||||||.||||+++|+      .......++++++|++++.+|++|+++.... +.+|..|++++++       
T Consensus       254 ~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~  333 (643)
T d1pg4a_         254 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP  333 (643)
T ss_dssp             EEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSS
T ss_pred             eEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCC
Confidence            5699999999999999999997      2233445789999999999999999998764 5669999999874       


Q ss_pred             CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261          104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  183 (467)
Q Consensus       104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (467)
                      ++..+++.++++++|++.++|+++..|.+......                            .                
T Consensus       334 ~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~----------------------------~----------------  369 (643)
T d1pg4a_         334 TPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI----------------------------E----------------  369 (643)
T ss_dssp             STTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT----------------------------T----------------
T ss_pred             CHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc----------------------------c----------------
Confidence            57889999999999999999999998876311100                            0                


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh---CCceeeccccccccccccc
Q 012261          184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI---GVKVQVGYGLTESSPVIAA  259 (467)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~---g~~v~~~YG~TE~~~~~~~  259 (467)
                                                   ..++++||.+++||+++++++.+ +.+.+   ++++++.||+||+++..+.
T Consensus       370 -----------------------------~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~  420 (643)
T d1pg4a_         370 -----------------------------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT  420 (643)
T ss_dssp             -----------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred             -----------------------------ccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEe
Confidence                                         14567789999999999999855 45566   4779999999999987766


Q ss_pred             cCCC--CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCcccccccc--CCCCeeecccEEE
Q 012261          260 RRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGWLNTGDIGW  333 (467)
Q Consensus       260 ~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~--~~~gw~~TGD~~~  333 (467)
                      ..+.  ..+.+++|.|+++++++++| +.|++++.|+.|||++++  |+++.|||++++.+...+  ..+|||+|||+|+
T Consensus       421 ~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~  499 (643)
T d1pg4a_         421 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGAR  499 (643)
T ss_dssp             CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEE
T ss_pred             cCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEE
Confidence            5433  24679999999999999999 568999999999999999  578999999998877664  3489999999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      +++          ||.+++.||+||+|+. +|++|+|.|||++|.+||.|.||+|+|.+++    .++|+|+++++    
T Consensus       500 ~d~----------dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~----  564 (643)
T d1pg4a_         500 RDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG----  564 (643)
T ss_dssp             ECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT----
T ss_pred             ECC----------CceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCC----
Confidence            999          9999999999999997 8999999999999999999999999998654    57789998764    


Q ss_pred             HHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ...+   ..+++++++++|.+|     ..|+.|.++++.|.+.+||+.
T Consensus       565 ------------~~~~~~~~~~i~~~~~~~L~~~-----~vP~~i~~v~~lP~T~sGKi~  607 (643)
T d1pg4a_         565 ------------EEPSPELYAEVRNWVRKEIGPL-----ATPDVLHWTDSLPKTRSGKIM  607 (643)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTCGG-----GCCSEEEECSCCCBCTTSCBC
T ss_pred             ------------CCCCHHHHHHHHHHHHhhCCcc-----cCccEEEEECCCCCCCCcCcc
Confidence                        2233   236777888888777     588999999999999999974

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.4e-47  Score=403.27  Aligned_cols=324  Identities=22%  Similarity=0.288  Sum_probs=259.9

Q ss_pred             CceEEEeeeCCCCCCcceehhhhhH-----hhh---cccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQIR-----SLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~~~-----~~~---~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~  105 (467)
                      .+++|+|||||||.||+|+++|+..     ...   ....+.++|++++++|++|.++....+..+..++..+..   +.
T Consensus       188 ~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (541)
T d1lcia_         188 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEE  267 (541)
T ss_dssp             SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred             ceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3468999999999999999999711     122   233577899999999999999998888887777777773   67


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ......+..+++|.+..+|..+..+.+.....                                                
T Consensus       268 ~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~------------------------------------------------  299 (541)
T d1lcia_         268 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLID------------------------------------------------  299 (541)
T ss_dssp             HHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG------------------------------------------------
T ss_pred             chhHHHHhhhhccccccCcccccccccccccc------------------------------------------------
Confidence            88889999999999999999998887621110                                                


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC-CceeeccccccccccccccCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRPT  263 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~  263 (467)
                                                 ...+..++.+++||+++++++ .++.+.++ ..+++.||+||+++.++..+..
T Consensus       300 ---------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  352 (541)
T d1lcia_         300 ---------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG  352 (541)
T ss_dssp             ---------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC
T ss_pred             ---------------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc
Confidence                                       134456799999999999998 55555675 4689999999999988888877


Q ss_pred             CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ..+++++|.|+|+++++|+|+|++++++.|+.|||+++|++++.||+++++.+...+..+|||+|||+|++++       
T Consensus       353 ~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~-------  425 (541)
T d1lcia_         353 DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE-------  425 (541)
T ss_dssp             ---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred             cCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcC-------
Confidence            7888999999999999999999999999999999999999999999999999988888899999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         +|.+++.||.||+|++ +|++|+|.+||++|.+||+|.||+|+|.+++    .++++|+++++              
T Consensus       426 ---~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~--------------  487 (541)
T d1lcia_         426 ---DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--------------  487 (541)
T ss_dssp             ---TCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------------
T ss_pred             ---CeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCC--------------
Confidence               9999999999999997 8999999999999999999999999997654    46688888654              


Q ss_pred             CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++.++++++|.++.    ..++.|+++++.|.+.+||++
T Consensus       488 --~~~~~~~l~~~~~~~l~~~~----~~p~~i~~v~~lP~t~~GKi~  528 (541)
T d1lcia_         488 --KTMTEKEIVDYVASQVTTAK----KLRGGVVFVDEVPKGLTGKLD  528 (541)
T ss_dssp             --CCCCHHHHHHHHHHHSCGGG----SCTTEEEEESSCCC-----CC
T ss_pred             --CCCCHHHHHHHHHHhCCccc----cCCcEEEEeCCCCcCCCcCcc
Confidence              45677889999998887762    235789999999999999984

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-48  Score=416.07  Aligned_cols=333  Identities=16%  Similarity=0.165  Sum_probs=265.6

Q ss_pred             CceEEEeeeCCCCCCcceehhhh------hHhhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec------
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ------IRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT------  103 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~------~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~------  103 (467)
                      .+++|+|||||||.||||+++|.      .......++++++|++++++|++|+++.... +.+|..|+++++.      
T Consensus       240 d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~  319 (640)
T d1ry2a_         240 DPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAY  319 (640)
T ss_dssp             SCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTS
T ss_pred             cCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCC
Confidence            46799999999999999999998      1222345678999999999999999997754 5669999988773      


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       ++..+++.++++++|++.++|+++..|.+......                                            
T Consensus       320 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------------  355 (640)
T d1ry2a_         320 PNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--------------------------------------------  355 (640)
T ss_dssp             SCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--------------------------------------------
T ss_pred             CCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc--------------------------------------------
Confidence             57889999999999999999999988765211000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhC---Cceeecccccccccccc
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG---VKVQVGYGLTESSPVIA  258 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g---~~v~~~YG~TE~~~~~~  258 (467)
                                                   -+.++++||.+++||+++++++.+++ +.+|   ..+++.||+||++....
T Consensus       356 -----------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~  406 (640)
T d1ry2a_         356 -----------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV  406 (640)
T ss_dssp             -----------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred             -----------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccc
Confidence                                         01457788999999999999995554 4564   56999999999987766


Q ss_pred             ccCCC---CCCCCcccccCCCeEEEEEeCCCCcccC-CCCceEEEEeC--CCcCcccCCCccccccccC--CCCeeeccc
Q 012261          259 ARRPT---CNVLGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGD  330 (467)
Q Consensus       259 ~~~~~---~~~~g~vG~p~~~~~v~i~d~~~~~~~~-~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~--~~gw~~TGD  330 (467)
                      .....   ..+++++|.|+++++++++|++++..++ .++.|||++++  |+++.|||++++.+.+.+.  .+|||+|||
T Consensus       407 ~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGD  486 (640)
T d1ry2a_         407 TPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD  486 (640)
T ss_dssp             ECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEE
T ss_pred             cccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCC
Confidence            55433   2467899999999999999977766554 45579999998  5899999999999988873  469999999


Q ss_pred             EEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHH
Q 012261          331 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  406 (467)
Q Consensus       331 ~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  406 (467)
                      +|++++          ||+++|.||+||+|+. +|++|+|.|||++|.+||.|.||+|+|.+++    .++|+|+++++.
T Consensus       487 lg~~d~----------dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~  555 (640)
T d1ry2a_         487 GAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS  555 (640)
T ss_dssp             EEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred             ceeECC----------CCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCC
Confidence            999999          9999999999999996 8999999999999999999999999998664    578999998653


Q ss_pred             HHHHHHHccccccCcccC--CHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          407 VLMAAKRLSIVHADASEL--SKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      ....+.        ...+  -.+++.++++++|.+|     ..|+.|+++++.|.+.+|||.
T Consensus       556 ~~~~~~--------~~~~~~l~~~l~~~~~~~L~~~-----~~P~~i~~v~~lP~T~sGKi~  604 (640)
T d1ry2a_         556 SWSTAT--------DDELQDIKKHLVFTVRKDIGPF-----AAPKLIILVDDLPKTRSGKIM  604 (640)
T ss_dssp             -----------------CCSHHHHHHHHHHHHTCTT-----TSCSEEEECSCCCBCTTSCBC
T ss_pred             Cccccc--------hHHHHHHHHHHHHHHHhhCCCC-----CCceEEEEeCCCCCCCCcCcc
Confidence            211100        0111  1345666777777766     688999999999999999984

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-47  Score=402.43  Aligned_cols=325  Identities=24%  Similarity=0.343  Sum_probs=239.4

Q ss_pred             CCCCCceEEEeeeCCCCCCcceehhhhhH-------hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec--
Q 012261           33 RRDLPLFSFVLIDLNTWMPIPKMTNFQIR-------SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  103 (467)
Q Consensus        33 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~-------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~--  103 (467)
                      ..+..++.|+|||||||.||+|+++|...       .....+....+|++++++|++|.++....+..+..|+.+++.  
T Consensus       166 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~  245 (534)
T d1v25a_         166 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP  245 (534)
T ss_dssp             CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred             cccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccc
Confidence            33445679999999999999999999821       222334667889999999999999999888888788777774  


Q ss_pred             --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261          104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  181 (467)
Q Consensus       104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (467)
                        ++..++..++++++|++.++|+++..+.+.....                                            
T Consensus       246 ~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~--------------------------------------------  281 (534)
T d1v25a_         246 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST--------------------------------------------  281 (534)
T ss_dssp             CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH--------------------------------------------
T ss_pred             cccccccchhhhhccccccccCchhhhhhhhhhccc--------------------------------------------
Confidence              6888999999999999999999999887743221                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccC
Q 012261          182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR  261 (467)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~  261 (467)
                                                     ...++++|.+++||++++++..++++.++.++++.||+||+++......
T Consensus       282 -------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~~~~~~  330 (534)
T d1v25a_         282 -------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNF  330 (534)
T ss_dssp             -------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECC
T ss_pred             -------------------------------cccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccceeecc
Confidence                                           1456677999999999999998888889999999999999998877654


Q ss_pred             CCC-----------CCCCcccccCCCeEEEEEeCCCCcccCC--CCceEEEEeCCCcCcccCCCccccccccCCCCeeec
Q 012261          262 PTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  328 (467)
Q Consensus       262 ~~~-----------~~~g~vG~p~~~~~v~i~d~~~~~~~~~--g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~T  328 (467)
                      ...           ...+++|.|+++++++|+| +.+++++.  |+.|||+++|++++.|||++++.+...+..||||+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~T  409 (534)
T d1v25a_         331 VKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT  409 (534)
T ss_dssp             CCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEE
T ss_pred             cCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCcc
Confidence            322           1347899999999999999 55777765  678999999999999999999999999999999999


Q ss_pred             ccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecCh
Q 012261          329 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDK  404 (467)
Q Consensus       329 GD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~  404 (467)
                      ||+|++++          ||.+++.||+||+|++ +|++|+|.|||++|.+||+|+|++|+|.+++.    +.|+|+++.
T Consensus       410 GDlg~~~~----------~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~  478 (534)
T d1v25a_         410 GDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG  478 (534)
T ss_dssp             EEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred             CceeEECC----------CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCC
Confidence            99999999          9999999999999996 99999999999999999999999999976653    556666653


Q ss_pred             HHHHHHHHHccccccCcccCCHHHHHHH-HHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          405 EEVLMAAKRLSIVHADASELSKEKTISL-LYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                      +                 ....+++++. +++.|+.|     .+|+.|+++++.|.+.+|||.
T Consensus       479 ~-----------------~~~~~~~~~~~~~~~l~~~-----~~P~~i~~~~~lP~t~~GKi~  519 (534)
T d1v25a_         479 E-----------------KPTPEELNEHLLKAGFAKW-----QLPDAYVFAEEIPRTSAGKFL  519 (534)
T ss_dssp             --------------------------------CCCTT-----TSCSBC--------------C
T ss_pred             C-----------------CCCHHHHHHHHHHhcCCcC-----CCccEEEEECCCCCCCCcccc
Confidence            2                 1222334443 44556655     688899999999999999985

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.7e-43  Score=370.24  Aligned_cols=316  Identities=17%  Similarity=0.171  Sum_probs=262.5

Q ss_pred             CCCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----
Q 012261           34 RDLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----  103 (467)
Q Consensus        34 ~~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----  103 (467)
                      ..-.+++|+|||||||.||+|+++|.     +......++..++|+++.++|++|.+++...+.++..|+++++.     
T Consensus       164 ~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  243 (514)
T d1amua_         164 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTI  243 (514)
T ss_dssp             CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred             CcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccc
Confidence            33445699999999999999999998     44556677889999999999999999998888888888888875     


Q ss_pred             -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261          104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  182 (467)
Q Consensus       104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (467)
                       +....++.+....++.+..+|........                                                  
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------  273 (514)
T d1amua_         244 NDFVKFEQYINQKEITVITLPPTYVVHLDP--------------------------------------------------  273 (514)
T ss_dssp             TCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------------------------------------------------
T ss_pred             cchhhhhhhhhhhhcccccceeeecccccc--------------------------------------------------
Confidence             34567788899999999999876432211                                                  


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCC
Q 012261          183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  262 (467)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  262 (467)
                                                     .++..++.+++||+++++++.+.+.. +..+++.||+||++.+.+....
T Consensus       274 -------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~  321 (514)
T d1amua_         274 -------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVA  321 (514)
T ss_dssp             -------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEEC
T ss_pred             -------------------------------cccccccEEEEecccCCHHHhhhhcc-ceeEEEeeccccCceeeeeccc
Confidence                                           45666799999999999988543322 6899999999999987765544


Q ss_pred             CC---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc------CCCCeeecccEEE
Q 012261          263 TC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL------DEDGWLNTGDIGW  333 (467)
Q Consensus       263 ~~---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~------~~~gw~~TGD~~~  333 (467)
                      ..   ...++.|.+.++..+.+.| ++++.++.|+.|||+|+|++++.|||+++..+...|      +.+|||+|||+|+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~  400 (514)
T d1amua_         322 TKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQAR  400 (514)
T ss_dssp             CSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred             cccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEE
Confidence            33   3456788999999999999 789999999999999999999999999998877765      3478999999999


Q ss_pred             EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261          334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  409 (467)
Q Consensus       334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  409 (467)
                      +++          +|++++.||+||+|++ +|++|+|.+||++|.+||+|.||+|+|.++.    .++|+|+++      
T Consensus       401 ~d~----------~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~------  463 (514)
T d1amua_         401 WLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE------  463 (514)
T ss_dssp             ECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES------
T ss_pred             ECC----------CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcC------
Confidence            999          9999999999999997 8999999999999999999999999998654    567778776      


Q ss_pred             HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                                  ...+.++++++++++|++|     .+|+.|+++++.|++.+|||.
T Consensus       464 ------------~~~~~~~l~~~~~~~l~~~-----~~p~~i~~v~~lP~t~~GKi~  503 (514)
T d1amua_         464 ------------KHIPLEQLRQFSSEELPTY-----MIPSYFIQLDKMPLTSNGKID  503 (514)
T ss_dssp             ------------SCCCHHHHHHHHHHHSCGG-----GSCSEEEECSSCCBCTTSSBC
T ss_pred             ------------CCCCHHHHHHHHHhhCCcc-----cCceEEEEeCCCCCCCCcChh
Confidence                        3356788999999998888     688899999999999999974

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.2e-42  Score=358.71  Aligned_cols=322  Identities=17%  Similarity=0.236  Sum_probs=267.7

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHH-H-hhcCceEEec---CHH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-I-FSRGIELMYT---AVR  106 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~-~-l~~G~~~v~~---~~~  106 (467)
                      .+++|+|||||||.||+|++||.     +......++++++|++++.+|++|.+++...+. . +..|++++..   ++.
T Consensus       183 d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~  262 (536)
T d1mdba_         183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD  262 (536)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHH
T ss_pred             chHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCCCCHH
Confidence            35699999999999999999997     445556678999999999999999999865433 3 4556776663   688


Q ss_pred             HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261          107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  186 (467)
Q Consensus       107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (467)
                      .++..+++++++.+..+|..+..+.......                                                 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  293 (536)
T d1mdba_         263 DAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------------  293 (536)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred             HHHHHHhhhccccccccchhhhhhhhhcccc-------------------------------------------------
Confidence            9999999999999999999998877642221                                                 


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCC-C
Q 012261          187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT-C  264 (467)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~  264 (467)
                                                ...++.++.+++||+++++++. ++.+.++......|+.+|.+......... .
T Consensus       294 --------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (536)
T d1mdba_         294 --------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEE  347 (536)
T ss_dssp             --------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHH
T ss_pred             --------------------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccc
Confidence                                      1344566999999999999984 45557799999999999987665554432 2


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCcc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  344 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~  344 (467)
                      ...+++|.|.++....+++.+.+++++.++.|||+++|+.++.||++++..+...++++|||+|||++++++        
T Consensus       348 ~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~--------  419 (536)
T d1mdba_         348 IIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR--------  419 (536)
T ss_dssp             HHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT--------
T ss_pred             cccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccC--------
Confidence            356789999876655565558899999999999999999999999999999999998999999999999999        


Q ss_pred             ccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccC
Q 012261          345 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  420 (467)
Q Consensus       345 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  420 (467)
                        ||.+++.||+||+|++ +|++|+|.+||+.|.+||+|++++|+|.+++    .+.|+|+++++               
T Consensus       420 --dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~---------------  481 (536)
T d1mdba_         420 --DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE---------------  481 (536)
T ss_dssp             --TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS---------------
T ss_pred             --CCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC---------------
Confidence              9999999999999996 8999999999999999999999999997654    46678887632               


Q ss_pred             cccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          421 ASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       421 ~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ..+.++++++++++ |+.|     ..|+.|+++++.|.+.+|||+
T Consensus       482 --~~~~~~l~~~l~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~  521 (536)
T d1mdba_         482 --APKAAELKAFLRERGLAAY-----KIPDRVEFVESFPQTGVGKVS  521 (536)
T ss_dssp             --CCCHHHHHHHHHHTTCCGG-----GSCSEEEECSSCCBCTTSCBC
T ss_pred             --CCCHHHHHHHHHhcCCCcC-----cCccEEEEECCCCcCCCcCcc
Confidence              34677888888864 6677     577899999999999999985

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=2.7e-38  Score=326.76  Aligned_cols=323  Identities=19%  Similarity=0.230  Sum_probs=256.5

Q ss_pred             CceEEEeeeCCCCCCcceehhhh-----hHhhhcc--cCCCCCCEEEEECChhHHHHHHHhH-HHhhcCceEEec---CH
Q 012261           37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDI--VPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---AV  105 (467)
Q Consensus        37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~--~~~~~~d~~l~~lPl~h~~g~~~~~-~~l~~G~~~v~~---~~  105 (467)
                      .+++|+|||||||.||+|+++|.     +......  ......|+++..+|++|.++..... .+...++.++..   ++
T Consensus       154 ~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (503)
T d3cw9a1         154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP  233 (503)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCH
T ss_pred             hhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccCh
Confidence            45699999999999999999997     1122222  3445668999999999888877554 446666666663   68


Q ss_pred             HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261          106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  185 (467)
Q Consensus       106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (467)
                      ..++..+..++++.+..+|..+..+.........                                              
T Consensus       234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  267 (503)
T d3cw9a1         234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS----------------------------------------------  267 (503)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT----------------------------------------------
T ss_pred             HHhhhhhhhceeeccccccccccccccccccccc----------------------------------------------
Confidence            8999999999999999999999887664332110                                              


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCCC
Q 012261          186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTC  264 (467)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~~  264 (467)
                                                 ...++.+|.+++||+++++++... ...++..+.+.||+||++..........
T Consensus       268 ---------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~  320 (503)
T d3cw9a1         268 ---------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT  320 (503)
T ss_dssp             ---------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSS
T ss_pred             ---------------------------cccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccc
Confidence                                       023456799999999999998544 4566889999999999998777766555


Q ss_pred             CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCC-CcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261          265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  343 (467)
Q Consensus       265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~-~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~  343 (467)
                      ....+.+.+.+.....+. ...++.++.|+.|++.+.+. ....+|+++++.+.+.| .+|||+|||+|++++       
T Consensus       321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~-------  391 (503)
T d3cw9a1         321 GTEMAPGFFSEVRIVRIG-GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP-------  391 (503)
T ss_dssp             SSEEBCCTTCCEEEECTT-SCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-------
T ss_pred             cccccccccccceeeeee-cccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceeccccccccc-------
Confidence            444444444444444443 47789999999998766654 66778999999998888 689999999999999       


Q ss_pred             cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261          344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  419 (467)
Q Consensus       344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  419 (467)
                         ||.+++.||+||+|++ +|++|+|.+||+.|.+||+|.||+|+|.+++    .+.|+|+++.+              
T Consensus       392 ---dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~--------------  453 (503)
T d3cw9a1         392 ---EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG--------------  453 (503)
T ss_dssp             ---TSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------------
T ss_pred             ---CCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCC--------------
Confidence               9999999999999997 8999999999999999999999999997654    57788888643              


Q ss_pred             CcccCCHHHHHHHHH-HHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261          420 DASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  466 (467)
Q Consensus       420 ~~~~~~~~~l~~~~~-~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~  466 (467)
                        ...+.+++.++++ ++|+.|     ++|+.|+++++.|.+.+|||.
T Consensus       454 --~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~~P~t~~GKi~  494 (503)
T d3cw9a1         454 --ETLSADALDTFCRSSELADF-----KRPKRYFILDQLPKNALNKVL  494 (503)
T ss_dssp             --CCCCHHHHHHHHHHSSSCGG-----GSCSEEEECSCCCBCTTSCBC
T ss_pred             --CCCCHHHHHHHHHhcCCCCC-----CCccEEEEECCCCcCCCcCcc
Confidence              5577888888885 457777     678899999999999999984