Citrus Sinensis ID: 012265

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAGAAGASSNSTSSQATSSKGAAQNVAQSSKGSSKSSRKKSRN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHcccccccHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHccccHHHHHHcccccccHcccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHccccccccccccHHccccccccEcccHHHHHHccccccccccccccccccccccccccccccccHcccccc
Coil and Loop (DISEMBL)
MILMYLIFVRIGqetltddnfaeddieiELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVAlkgpkdvndsLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAlpdmfpdsvMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAanhpfiaaeslakipdiqhmpATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKlrhgreedASHLFEELVKTHGSIEALVGLVTTsahvdvdkaesyekrlkplpglngvdvdslektsgakhvesasyfevneahgegknkdkakkkrkrkprypkgfdpanpgpppdperwlpkrerssyrprrkdkraaqvrgsqgavvrekhdagaagassnstssqatsskgaaqnvaqsskgsskssrkksrn
Flexible Loop (DISEMBL)
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNlvalkgpkdvndSLKKLDRikekdmqnfqlarvldlrlspkqREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAesyekrlkplpglngvdvdSLEKTSGakhvesasyfevneahgegknkdkakkkrkrkprypkgfdpanpgpppdperwlpkrerssyrprrkdkraaqvrgsqgavvrekhdagaagassnstssqatsskgaaqnvaqsskgsskssrkksrn
Low Complexity Region (SEG)
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLaraqvaaaaNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGknkdkakkkrkrkprypkgfdpanpgpppdpERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDagaagassnstssqatsskgaaqNVAQsskgsskssrkksrN
Disordered region (IsUnstruct)
*ILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK****************MQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH*****ASHLFEELVKTHGSIEALVGLVTTSAHVDVD*************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MILMYLIFVRI*****************ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARE********FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVD****************GVDVDSL*******************************************************ERWLPK*************************************************************************
Disordered Region (DISEMBL)
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVN*********************YPKGFDPANPGPPPDPERWLPKRE***********************************************************************
Disordered Region (DISPRO)
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSG**********************************YPKGFDPANPGPPPDPERWLPKRERSSY*******************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAGAAGASSNSTSSQATSSKGAAQNVAQSSKGSSKSSRKKSRN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
P33731	671	Signal recognition partic	yes	no	0.860	0.599	0.351	3e-50
O76094	671	Signal recognition partic	yes	no	0.860	0.599	0.348	7e-50
Q54EP7	672	Signal recognition partic	yes	no	0.811	0.563	0.269	4e-29
P49965	707	Signal recognition partic	N/A	no	0.802	0.530	0.289	6e-27
P91240	635	Signal recognition partic	yes	no	0.758	0.557	0.290	6e-20
O59787	561	Signal recognition partic	yes	no	0.768	0.639	0.234	1e-09
P38688	640	Signal recognition partic	yes	no	0.062	0.045	0.620	4e-05

>sp|P33731|SRP72_CANFA Signal recognition particle 72 kDa protein OS=Canis familiaris GN=SRP72 PE=1 SV=3

 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 238/433 (54%), Gaps = 31/433 (7%)

Query: 18  DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
           D +  E+D + ELA I  Q+AY+ QL G T+EA   Y  IIK    D    AV  NN++ 
Sbjct: 213 DSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIIT 272

Query: 78  LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
           +   ++V DS KK+             A  ++ +LS KQ +AI  N+ LL ++ N+ +Q 
Sbjct: 273 INKDQNVFDSKKKVKLTN---------AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323

Query: 138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197
           R++ A+L    P+ ++P+L+QAA L RE +  KA ELL +F+++ P+ +  I L  AQ+ 
Sbjct: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383

Query: 198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
            +  +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ N   + 
Sbjct: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443

Query: 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYE 316
           +    +++EAA+FKL++GR+++A    E+L K +   I  L  L++  + VD +KA++  
Sbjct: 444 SAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503

Query: 317 KRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA----HGEGKNKDKAKKKRKRKP 371
           K L     ++  VDV++LE + GA ++         ++     G+G   D  KKK+K+K 
Sbjct: 504 KHLPSSDSMSLKVDVEALENSPGATYIRKKGGKVAGDSQPKEQGQG---DLKKKKKKKKG 560

Query: 372 RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQV-RGSQGAVVREKHDAGAAG 430
           + PK +DP      PDPERWLP RERS YR R+K K+  Q+ +G+QGA          AG
Sbjct: 561 KLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGAT---------AG 608

Query: 431 ASSNSTSSQATSS 443
           ASS   +S+  SS
Sbjct: 609 ASSELDASKTVSS 621

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of SRP68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Canis familiaris (taxid: 9615)

>sp|O76094|SRP72_HUMAN Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72 PE=1 SV=3

 Score =  198 bits (504), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 238/433 (54%), Gaps = 31/433 (7%)

Query: 18  DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
           D +  E+D + ELA I  Q+AY+ QL G T+EA   Y  IIK    D    AV  NN++ 
Sbjct: 213 DTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIIT 272

Query: 78  LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
           +   ++V DS KK+             A  ++ +LS KQ +AI  N+ LL ++ N+ +Q 
Sbjct: 273 INKDQNVFDSKKKVKLTN---------AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323

Query: 138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197
           R++ A+L    P+ ++P+L+QAA L RE +  KA ELL +F+++ P+ +  I L  AQ+ 
Sbjct: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383

Query: 198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
            +  +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ N   + 
Sbjct: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443

Query: 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYE 316
                +++EAA+FKL++GR+++A    ++L K +   I  L  L++  + VD +KA++  
Sbjct: 444 PAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503

Query: 317 KRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA----HGEGKNKDKAKKKRKRKP 371
           K L     ++  VDV++LE ++GA ++         ++     G+G   D  KKK+K+K 
Sbjct: 504 KHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQG---DLKKKKKKKKG 560

Query: 372 RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQV-RGSQGAVVREKHDAGAAG 430
           + PK +DP      PDPERWLP RERS YR R+K K+  Q+ +G+QGA          AG
Sbjct: 561 KLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGAT---------AG 608

Query: 431 ASSNSTSSQATSS 443
           ASS   +S+  SS
Sbjct: 609 ASSELDASKTVSS 621

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of SRP68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Homo sapiens (taxid: 9606)

>sp|Q54EP7|SRP72_DICDI Signal recognition particle 72 kDa protein homolog OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 207/457 (45%), Gaps = 78/457 (17%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           +I  ++L  D F+E++I+ E   I VQL YVQQ+ GN +++   Y +++++ + D ++  
Sbjct: 202 KICTDSLKKDGFSEEEIKEEQTSIDVQLGYVQQICGNLEKSLEQYQNVLEQQVGDSATL- 260

Query: 70  VAVNNLVALKG----------PKDVN---DSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116
           VA NN ++++           PK+     DSLK L            L      RL+ KQ
Sbjct: 261 VATNNSISVRSILQSDQWSTQPKEYTHAMDSLKSL------------LTEAESTRLNSKQ 308

Query: 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---------LLQAAVLVRENK 167
           ++ I  N  LLL+   K+ Q  EL+  L   +      +         ++Q ++L++E K
Sbjct: 309 KKVINYNLCLLLVQLKKVSQCEELIKTLKSKYGQQQQQVDTSFVEDLDIIQVSLLIKEKK 368

Query: 168 AGKAEELL-------GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKI-PDIQHM 219
              AE+LL       G    +L   ++I LL    VA A N        L K+   +   
Sbjct: 369 FKDAEKLLLKNNTTTGSIKSQLL-LAQIYLLDNNNVAKALN-------VLEKLDSSVSLR 420

Query: 220 PATVATLVALKERAGDIDGAAAVLDSAIKWW--LNAMTEDNKLSV-IMQEAASFKLRHGR 276
           P  VAT VAL E++GD++ A   LD  I  +       +D ++ V +++ + +FKL+H +
Sbjct: 421 PGIVATKVALYEKSGDLEKAVNSLDDLISIFDKQKKSEKDEEIYVNLLKASGNFKLKHHK 480

Query: 277 EEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEK 335
             +AS +F+ ++K +   + AL   +  ++H D   ++ YE +L  +   + +D+D +EK
Sbjct: 481 YREASDMFDRVLKINPNDLIALPSYIVATSHFDPSLSQKYEGKLPNIKFESKIDIDLIEK 540

Query: 336 TSGAKHVESASYFEVNEAHGEGKN---------------KDKAKKKRKRKPRYPKGFDPA 380
                       FE      E  N               K  A +  K K    K     
Sbjct: 541 YGLT--------FEKKLNLNEDSNSSSPTTTTTTTTKSTKPTATEVVKIKKSKKKLPKVM 592

Query: 381 NPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQG 417
            P   PDP RWLPK +R++ +  R  K    ++G QG
Sbjct: 593 KPNYVPDPGRWLPKWQRANAKAARSKKNKDIIKGPQG 629

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of srp68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Dictyostelium discoideum (taxid: 44689)

>sp|P49965|SRP72_SCHMA Signal recognition particle 72 kDa protein OS=Schistosoma mansoni GN=SRP72 PE=3 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 134/463 (28%), Positives = 199/463 (42%), Gaps = 88/463 (19%)

Query: 30  LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLK 89
           LAPI VQ AY+ QL    +EA   Y  +I++  +D +  AVA NN+V +   +++ DS K
Sbjct: 220 LAPIRVQRAYILQLNKEEEEANQVYQSVIRQRASDPALLAVAANNIVCINQDQNIFDSRK 279

Query: 90  KLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP 149
              RIK       Q       +L  +QR  +  N+ L   + N+M+      A L  +  
Sbjct: 280 ---RIKMASTDGLQF------KLFSRQRTDMLINQALFYWYTNQMEAC---TAKLRTVSQ 327

Query: 150 DSVMP--LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI---ILLARAQVA---AAAN 201
           + + P  LLL A  L++E    KA  LL  +       S+I   I LA AQ+     +AN
Sbjct: 328 EELSPRALLLSATQLIKEKNVDKAVLLLQSYLSNFAG-SQIDAEIPLALAQLNLRRTSAN 386

Query: 202 H----------PFIAAESLAKI--PDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249
           +              A+ L  I    + H P  ++T +AL   A   + A      ++K 
Sbjct: 387 NLGTGSPQPKNALNVAQMLENILPQHLIHSPGVLSTRIALYLLASSGENAVQTRPDSMKQ 446

Query: 250 WLNA----------MTEDNKL-SVIMQEAASFKLRHGREEDASHLFE-ELVKTHGSI--- 294
            +N           + E N++ S ++   A+F L+ G  + A+ L E +L +   +I   
Sbjct: 447 IVNCIESTLHYYEELGEQNEIYSHLLDNCAAFLLQQGEAKLAAELLEKQLARLESNICQE 506

Query: 295 -------EALVG-LVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKT--SGAKHVES 344
                  + LV  LV   A  D  KAE   K L+    L+  DVD+LE T   GAK ++ 
Sbjct: 507 KQNSLIKQVLVARLVRAYAQFDRPKAEQTCKSLQAKESLSEADVDTLETTFLYGAKSLK- 565

Query: 345 ASYFEVNEAHGEGKNKDKAKKKRKRKPR----YPKGFDPA-------------------- 380
                + +        DK K KR +  +     P   DP                     
Sbjct: 566 ----RLGKPSEPTDTSDKGKSKRSQIKKSISDIPSSEDPGAQPVISRPKRKKRKVRLPKN 621

Query: 381 -NPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVRE 422
             PG  PDP RWLP+RER+ YR +R+DKR A  RG QG +  E
Sbjct: 622 YQPGVMPDPNRWLPRRERTHYRGKRRDKRFAPTRGPQGQITGE 664

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of SRP68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Schistosoma mansoni (taxid: 6183)

>sp|P91240|SRP72_CAEEL Signal recognition particle 72 kDa protein homolog OS=Caenorhabditis elegans GN=F08D12.1 PE=3 SV=2

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 174/399 (43%), Gaps = 45/399 (11%)

Query: 33  IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLD 92
           I VQ AYV Q +G   EA   Y  +   N  D S  A   NN+ A      + +S K+  
Sbjct: 222 IRVQKAYVLQRMGQKAEALAIYEKVQAANHPDSSVKATITNNIPAASSDFALPESRKR-- 279

Query: 93  RIKEKDMQNFQLARVLD-LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 151
                    F+ A  +D  +L+ +QR  +  N  L+LL +N+ +  +  +  L   F  S
Sbjct: 280 ---------FKAALQIDQTKLTRRQRLTLMLNNALVLLLSNQREPCKRALEELVAKFGSS 330

Query: 152 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 211
               L++A +     K G AE  L   A    ++S    LAR  V   A     A  ++ 
Sbjct: 331 KDVALIEATLHF---KMGDAEAALKVLAGSDLEQS----LARLHVLLNAGRLPEAVGAIR 383

Query: 212 KIPDIQHMPAT---VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK----LSVIM 264
            +P    + A+    +TL+A   R           D A+K  + A T  N+    L  I+
Sbjct: 384 DLPISGKLGASSLLTSTLIAADSR-----------DEAVKELVAASTAKNQTPEALKSIL 432

Query: 265 QEAASFKLRHGREEDASHLFEELV-KTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLP 323
           ++    + + G E  A+   E+LV K    ++    LV   +  D  KAES   +L P  
Sbjct: 433 EDLVEVEQQRGNETAATKHLEKLVEKFPEDLQLQCRLVGAYSKTDPKKAESLSAKLFPET 492

Query: 324 GLNGVDVDSLEKTS----GAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDP 379
               V+VD LE +     G K+ +         A      K K   KRKRK R PK +  
Sbjct: 493 MEVDVNVDELEDSDWILYGEKYRQKKEAKSPQTAEIAATRKLKIATKRKRKIRLPKNY-- 550

Query: 380 ANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGA 418
            N    PDPERWLP++ERS+Y+ +RK++     RG+QG+
Sbjct: 551 -NSAVTPDPERWLPRQERSTYKRKRKNREREIGRGTQGS 588

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of SRP68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Caenorhabditis elegans (taxid: 6239)

>sp|O59787|SRP72_SCHPO Signal recognition particle subunit srp72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 172/414 (41%), Gaps = 55/414 (13%)

Query: 17  TDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 76
           +D N  +   +I L  + +  AY+Q   G+ ++A      I K  L DE+S A+ VNNL+
Sbjct: 173 SDSNSEDHKSQINLCRLQLFFAYLQA--GDNEKASKESLKISKDCL-DETSQAIFVNNLI 229

Query: 77  ALKGPKDVNDSLKKLDR--IKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 134
           ++            +D   I  +D+    L + L   L+ ++++ I  N  LL +   K 
Sbjct: 230 SMS-----------IDNPYISFRDLHGTNLEKALSSLLASQKKQFI-RNLALLDMAVGKQ 277

Query: 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLA 192
              R+     P+        +     +L  E K+  + + L  + E L   D   I++  
Sbjct: 278 RSVRKEKKRNPEE------SIYFSTILLREETKSLISPKKLPGYLENLFKSDSDNIVVAL 331

Query: 193 RAQVAAAANHPFIAAESL----------AKIPDIQHMPATVATLVALKERAGDIDGAAAV 242
                  +N  F  A S+          ++   + + P  V    AL  +       + +
Sbjct: 332 LLMQHKISNGNFRGALSIYQKLRTSLEASQSLSVLYSPGLVGLGDALHYKIQSTGFKSQL 391

Query: 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE-------EDASHLFEELVKTHGSIE 295
           L  A  +W    + + KL +  +      L H  E       +D   + ++L++  G I 
Sbjct: 392 LHEAANYWRKQQSCEAKLLLCTRSL----LAHLDERAPVSTIQDDMSVIDDLLQWKGPIS 447

Query: 296 ALVGL-VTTSAHVDVDKAESYEKRLKPLPGL-NGVDVDSLEKTSGAKHVESASYFEVNEA 353
            LV   V    ++D +     +K L P   L  G+DVD +E     + V  ++     + 
Sbjct: 448 ELVSCKVAALCYLDKEIESGMDKYLVPTKDLITGIDVDDIE----IRGVPVSAAIGPIKR 503

Query: 354 HGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDK 407
             E  + + +KK RKR+   PK F   NP   PDP+RW+PKR+R++ + + K K
Sbjct: 504 SVEANSSNSSKKTRKRRKPTPKSF---NPKATPDPQRWIPKRDRTNVKIKSKGK 554

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds the 7S RNA only in presence of srp68. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38688|SRP72_YEAST Signal recognition particle subunit SRP72 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP72 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 386 PDPERWLPKRERSSYRPRRKDKRAAQVRG 414
           PDPERWLP R+RS+YRP++K + A Q +G
Sbjct: 579 PDPERWLPLRDRSTYRPKKKQQGAKQTQG 607

Signal-recognition-particle (SRP) assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum (ER) membrane. SRP is required for the cotranslational protein translocation for ER import and preferentially recognizes strongly hydrophobic signal sequences. It is involved in targeting the nascent chain-ribosome (RNC) complex to the ER and is proposed to participate in the arrest of nascent chain elongation during membrane targeting. SRP72 binds the 7S RNA only in presence of SRP68.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
225425902	673	PREDICTED: signal recognition particle 7	0.942	0.653	0.779	0.0
297738340	696	unnamed protein product [Vitis vinifera]	0.931	0.625	0.781	0.0
255547830	664	Signal recognition particle subunit srp7	0.946	0.665	0.801	1e-176
356525126	662	PREDICTED: signal recognition particle 7	0.937	0.661	0.765	1e-175
356512347	662	PREDICTED: signal recognition particle 7	0.937	0.661	0.761	1e-165
449435027	667	PREDICTED: signal recognition particle 7	0.948	0.664	0.737	1e-165
147802240	1085	hypothetical protein VITISV_028102 [Viti	0.850	0.365	0.789	1e-164
297841469	652	hypothetical protein ARALYDRAFT_475871 [	0.914	0.654	0.728	1e-163
15220511	664	signal recognition particle subunit SRP7	0.929	0.653	0.713	1e-161
28392976	536	unknown protein [Arabidopsis thaliana]	0.929	0.809	0.650	1e-161

>gi|225425902|ref|XP_002271378.1| PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/445 (77%), Positives = 399/445 (89%), Gaps = 5/445 (1%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           R+GQETL +DN A+D+IEIELAP+AVQLAYVQQLLGNT EA  AYT II RNLADESS A
Sbjct: 210 RVGQETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLA 269

Query: 70  VAVNNLVALKGPKDVNDSLKKLDRIKEKD--MQNFQLARVLDLRLSPKQREAIYANRVLL 127
           VAVNNLVALKGPKD++DSL+KLDR+ EK    Q+FQL+  L+ +LSPKQRE IY NRVLL
Sbjct: 270 VAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLL 329

Query: 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187
           LLHAN+MDQARELVAALPDMF DSVMP+LLQAAVLVRENK+GKAEE+LGQFAEK PDK+K
Sbjct: 330 LLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAK 389

Query: 188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247
           ++LLARAQ+AA A HP IAAESL+KI DIQH+PATVAT+V+LKERAGDIDGA AV DSAI
Sbjct: 390 VVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAI 449

Query: 248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHV 307
           +WW NAMTEDNKL+VIMQEAASFKL+HGRE++A+ L+EELVK+HGS++AL+GLVTT+A V
Sbjct: 450 QWWSNAMTEDNKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSVQALIGLVTTAARV 509

Query: 308 DVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKR 367
           DVDKAE+YEK+LKPLPGL GVDV+SLE+TSGAKH++S S   + EA+ E KNK+KAKKKR
Sbjct: 510 DVDKAEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKR 569

Query: 368 KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAG 427
           KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP+RKDKRAAQVRGSQGAVVREKH+A 
Sbjct: 570 KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREKHEAA 629

Query: 428 AAGAS---SNSTSSQATSSKGAAQN 449
            +  S   SNS S QAT+SKG++QN
Sbjct: 630 GSDTSANTSNSKSDQATTSKGSSQN 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738340|emb|CBI27541.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/440 (78%), Positives = 394/440 (89%), Gaps = 5/440 (1%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           R+GQETL +DN A+D+IEIELAP+AVQLAYVQQLLGNT EA  AYT II RNLADESS A
Sbjct: 210 RVGQETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLA 269

Query: 70  VAVNNLVALKGPKDVNDSLKKLDRIKEKD--MQNFQLARVLDLRLSPKQREAIYANRVLL 127
           VAVNNLVALKGPKD++DSL+KLDR+ EK    Q+FQL+  L+ +LSPKQRE IY NRVLL
Sbjct: 270 VAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLL 329

Query: 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187
           LLHAN+MDQARELVAALPDMF DSVMP+LLQAAVLVRENK+GKAEE+LGQFAEK PDK+K
Sbjct: 330 LLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPDKAK 389

Query: 188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247
           ++LLARAQ+AA A HP IAAESL+KI DIQH+PATVAT+V+LKERAGDIDGA AV DSAI
Sbjct: 390 VVLLARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAI 449

Query: 248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHV 307
           +WW NAMTEDNKL+VIMQEAASFKL+HGRE++A+ L+EELVK+HGS++AL+GLVTT+A V
Sbjct: 450 QWWSNAMTEDNKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSVQALIGLVTTAARV 509

Query: 308 DVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKR 367
           DVDKAE+YEK+LKPLPGL GVDV+SLE+TSGAKH++S S   + EA+ E KNK+KAKKKR
Sbjct: 510 DVDKAEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKR 569

Query: 368 KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAG 427
           KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP+RKDKRAAQVRGSQGAVVREKH+A 
Sbjct: 570 KRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREKHEAA 629

Query: 428 AAGAS---SNSTSSQATSSK 444
            +  S   SNS S QAT+SK
Sbjct: 630 GSDTSANTSNSKSDQATTSK 649

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547830|ref|XP_002514972.1| Signal recognition particle subunit srp72, putative [Ricinus communis] gi|223546023|gb|EEF47526.1| Signal recognition particle subunit srp72, putative [Ricinus communis]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 359/448 (80%), Positives = 401/448 (89%), Gaps = 6/448 (1%)

Query: 4   MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63
           + L   RIGQETL DDN AEDDIEIELAPIAVQLAYVQ+LLG +QEA GAYTDII RNLA
Sbjct: 205 LLLTARRIGQETLMDDNLAEDDIEIELAPIAVQLAYVQELLGRSQEAMGAYTDIINRNLA 264

Query: 64  DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 123
           DESSFAVAVNNLVALKG KDV+D+L+KLDR+K+KD Q FQLAR L+ +LS KQRE IYAN
Sbjct: 265 DESSFAVAVNNLVALKGTKDVSDNLRKLDRLKDKDAQGFQLARGLE-KLSVKQRETIYAN 323

Query: 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183
           RVLLLLHANKMDQARE+VAALP MF DSV+P+LLQ+AVLVRENKA +AEE+L QFAEKLP
Sbjct: 324 RVLLLLHANKMDQAREIVAALPYMFADSVVPVLLQSAVLVRENKASRAEEILAQFAEKLP 383

Query: 184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 243
           DKSKIILLARAQ+AAAA HP +AA+SL+KI DIQH PATVAT+VALKERAGDIDGA+AVL
Sbjct: 384 DKSKIILLARAQIAAAAGHPQVAADSLSKITDIQHKPATVATIVALKERAGDIDGASAVL 443

Query: 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT 303
           DSAIKWW NAM EDNKL VIMQ+AASFK+RHGREE+A+HL+E+LVK+HGSIEAL GLV+T
Sbjct: 444 DSAIKWWSNAMAEDNKLDVIMQQAASFKIRHGREEEAAHLYEQLVKSHGSIEALAGLVST 503

Query: 304 SAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKA 363
            A+V+VDKAE+YEK+LKPLPGL G+DVDSLEKTSGAKHVE  S+  V E H EGK + K 
Sbjct: 504 VANVNVDKAEAYEKQLKPLPGLKGIDVDSLEKTSGAKHVE-GSHVSVAEVHEEGKKE-KP 561

Query: 364 KKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREK 423
           KKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP+RKDKRAAQVRGSQGAVVREK
Sbjct: 562 KKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAAQVRGSQGAVVREK 621

Query: 424 HDAGAAG---ASSNSTSSQATSSKGAAQ 448
           H+AGA+     +SNS SSQATSSK AA+
Sbjct: 622 HEAGASATTSNTSNSKSSQATSSKAAAE 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525126|ref|XP_003531178.1| PREDICTED: signal recognition particle 72 kDa protein-like [Glycine max]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 390/440 (88%), Gaps = 2/440 (0%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           RIGQE L +DN A+DDIEIEL+PIAVQLAYV QLLG  Q+A  AYTD+IKR++ADESS A
Sbjct: 207 RIGQEVLMEDNLADDDIEIELSPIAVQLAYVHQLLGRKQDAIEAYTDVIKRDMADESSIA 266

Query: 70  VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLL 129
           VAVNNLV+LKGPKDV+DSL+KLDR+K+K+ Q+F+LA  LDL+LS K++EAIYANRV+LLL
Sbjct: 267 VAVNNLVSLKGPKDVSDSLRKLDRLKDKENQSFRLAPGLDLKLSAKEKEAIYANRVVLLL 326

Query: 130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189
           HANK++QARELV+ALPDMFP+SV+P+LLQAA+LVRENKAG+AEE+L QFA K P+KSK++
Sbjct: 327 HANKIEQARELVSALPDMFPESVIPILLQAALLVRENKAGRAEEILAQFASKFPEKSKVV 386

Query: 190 LLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249
            LARAQVAAAA HP IAA+SLAKI DIQHMPATVATLV+LKERAGDIDGAAAVLD+AIKW
Sbjct: 387 HLARAQVAAAAGHPHIAADSLAKISDIQHMPATVATLVSLKERAGDIDGAAAVLDAAIKW 446

Query: 250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDV 309
           W NAMTEDNKL+ I QEAASFKLRHG+EEDA+ L+E+LVK+ GSIEALVGLVTT A +DV
Sbjct: 447 WSNAMTEDNKLNTITQEAASFKLRHGKEEDAAQLYEQLVKSQGSIEALVGLVTTVARMDV 506

Query: 310 DKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKR 369
            KAE YEK+LK LPGL G+DVDSLE+TSG K V+ A    V E + EGKNK K+KKKRKR
Sbjct: 507 VKAELYEKQLKALPGLKGIDVDSLERTSGVKQVD-APRVGVPETYEEGKNKTKSKKKRKR 565

Query: 370 KPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAGAA 429
           KPRYPKGFDPANPGP PDPERWLPKRERS+YRP+RKDKRAAQVRGSQGAVVR+KHD GA+
Sbjct: 566 KPRYPKGFDPANPGPAPDPERWLPKRERSTYRPKRKDKRAAQVRGSQGAVVRDKHDTGAS 625

Query: 430 GASSNSTSSQATSSKGAAQN 449
             +SN  S+Q T SKGAAQN
Sbjct: 626 SNNSNPKSNQGT-SKGAAQN 644

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512347|ref|XP_003524881.1| PREDICTED: signal recognition particle 72 kDa protein-like [Glycine max]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 335/440 (76%), Positives = 386/440 (87%), Gaps = 2/440 (0%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           RIGQE L +DN A+D+IEIEL+PIAVQLAYVQQLLG  Q+A  AYTD+IKR++ADESS A
Sbjct: 207 RIGQEVLMEDNLADDEIEIELSPIAVQLAYVQQLLGRKQDAIEAYTDVIKRDMADESSIA 266

Query: 70  VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLL 129
           VAVNNLV+LKGPKDV+DSL+KLDR+K+K+ Q+F+LA  LDL+LS K++EAIYANRVLLLL
Sbjct: 267 VAVNNLVSLKGPKDVSDSLRKLDRLKDKENQSFRLAPGLDLKLSAKEKEAIYANRVLLLL 326

Query: 130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189
           HANK +QARELV+ALPDMFP+SV+P+ LQAA+LVRENKAG+AEE+L QFA K PDKSK++
Sbjct: 327 HANKNEQARELVSALPDMFPESVIPIFLQAALLVRENKAGRAEEILAQFASKFPDKSKVV 386

Query: 190 LLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249
            LARAQVAAAA HP IAA+SL KI DIQHMPATVATLV+LKERAGDIDGAAAVLD+A KW
Sbjct: 387 HLARAQVAAAAGHPHIAADSLTKISDIQHMPATVATLVSLKERAGDIDGAAAVLDNATKW 446

Query: 250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDV 309
           W NAMTEDNKL+ I QEAA FKLRHG+EE+A+ L+E+LVK+ GSIEALVGLVTT A +DV
Sbjct: 447 WSNAMTEDNKLNTITQEAALFKLRHGKEEEAAQLYEQLVKSQGSIEALVGLVTTVARMDV 506

Query: 310 DKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKR 369
            KAE YEK+L  LPGL G+DVDSLE+TSG K V+ A    V E + EGKNK K+KKKRKR
Sbjct: 507 AKAELYEKQLNALPGLKGIDVDSLERTSGVKQVD-APRVGVAETYEEGKNKTKSKKKRKR 565

Query: 370 KPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAGAA 429
           KPRYPKGFDPANPGPPPDPERWLPKRERS+YRP+RKDKRAAQVRGSQGAVVR+KHD GA+
Sbjct: 566 KPRYPKGFDPANPGPPPDPERWLPKRERSTYRPKRKDKRAAQVRGSQGAVVRDKHDTGAS 625

Query: 430 GASSNSTSSQATSSKGAAQN 449
             SSN  S+Q T SKGAAQN
Sbjct: 626 SNSSNLKSNQGT-SKGAAQN 644

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435027|ref|XP_004135297.1| PREDICTED: signal recognition particle 72 kDa protein-like [Cucumis sativus] gi|449530207|ref|XP_004172087.1| PREDICTED: signal recognition particle 72 kDa protein-like [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 329/446 (73%), Positives = 387/446 (86%), Gaps = 3/446 (0%)

Query: 10  RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
           RIGQETL ++N  ++DIEIELAPIAVQLAY+QQLLG+T +A  AY DII R+LADESS A
Sbjct: 208 RIGQETLMEENLPDEDIEIELAPIAVQLAYLQQLLGHTSDASEAYKDIINRDLADESSLA 267

Query: 70  VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLL 129
           VAVNNL+ALKGPKD++D L+KLD++KEKD  NF+LA  L+ ++S KQRE IYANR+LLLL
Sbjct: 268 VAVNNLIALKGPKDISDGLRKLDKLKEKDAPNFRLAHGLEPKISQKQRETIYANRLLLLL 327

Query: 130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189
           HANKMDQARE+VA + DMFP+SV P+LLQAAVLVRENKAGKAEE+LGQFAE  PDKSK++
Sbjct: 328 HANKMDQAREMVANMADMFPNSVTPVLLQAAVLVRENKAGKAEEILGQFAENFPDKSKLV 387

Query: 190 LLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249
           LLARAQVAAAA HP IA ESL+KI DIQHMPAT+ATLV+LKERAGD+DGA AVLDSA+KW
Sbjct: 388 LLARAQVAAAAGHPHIAFESLSKIQDIQHMPATIATLVSLKERAGDVDGAIAVLDSAVKW 447

Query: 250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDV 309
           W NAM+EDNKL +++QEAASFKL+HGREEDA+ L+EELVKTHGSIEAL GLV T A VD+
Sbjct: 448 WSNAMSEDNKLDIVLQEAASFKLKHGREEDAAKLYEELVKTHGSIEALAGLVKTVARVDI 507

Query: 310 DKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKR 369
            KAE+YEK+LKPLPGL  VDV++LE+TSGAKHVE+ +    ++A+   KNK K+KKKRKR
Sbjct: 508 KKAETYEKQLKPLPGLKEVDVENLERTSGAKHVENGADHGASDAYMVDKNKTKSKKKRKR 567

Query: 370 KPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREKHDAGAA 429
           KPRYPKGFDPANPGPPPDPERWLP+RERSSYRP+RKDKRAAQVRGSQGA+VREKH+   +
Sbjct: 568 KPRYPKGFDPANPGPPPDPERWLPRRERSSYRPKRKDKRAAQVRGSQGAMVREKHETSVS 627

Query: 430 GA---SSNSTSSQATSSKGAAQNVAQ 452
           G    ++NS S+QA SSKG  QN  Q
Sbjct: 628 GGSSNNANSKSNQAMSSKGTNQNTEQ 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802240|emb|CAN63819.1| hypothetical protein VITISV_028102 [Vitis vinifera]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 315/399 (78%), Positives = 362/399 (90%), Gaps = 2/399 (0%)

Query: 14   ETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVN 73
            ETL +DN A+D+IEIELAP+AVQLAYVQQLLGNT EA  AYT II RNLADESS AVAVN
Sbjct: 677  ETLMEDNLADDEIEIELAPLAVQLAYVQQLLGNTPEAMEAYTGIINRNLADESSLAVAVN 736

Query: 74   NLVALKGPKDVNDSLKKLDRIKEKD--MQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 131
            NLVALKGPKD++DSL+KLDR+ EK    Q+FQL+  L+ +LSPKQRE IY NRVLLLLHA
Sbjct: 737  NLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHA 796

Query: 132  NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191
            N+MDQARELVAALPDMF DSVMP+LLQAAVLVRENK+GKAEE+LGQFAEK P+K+K++LL
Sbjct: 797  NRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILGQFAEKFPNKAKVVLL 856

Query: 192  ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251
            ARAQ+AA A HP IAAESL+KI DIQH+PATVAT+V+LKERAGDIDGA AV DSAI+WW 
Sbjct: 857  ARAQIAAVAGHPQIAAESLSKIADIQHLPATVATIVSLKERAGDIDGAEAVFDSAIQWWS 916

Query: 252  NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDK 311
            NAMTEDNKL+VIMQEAASFKL+HGRE++A+ L+EELVK+HGS++AL+GLVTT+A VDVDK
Sbjct: 917  NAMTEDNKLTVIMQEAASFKLKHGREKEAARLYEELVKSHGSVQALIGLVTTAARVDVDK 976

Query: 312  AESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKP 371
            AE+YEK+LKPLPGL GVDV+SLE+TSGAKH++S S   + EA+ E KNK+KAKKKRKRKP
Sbjct: 977  AEAYEKQLKPLPGLKGVDVESLERTSGAKHIQSDSRVGITEAYEESKNKEKAKKKRKRKP 1036

Query: 372  RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAA 410
            RYPKGFDPANPGPPPDPERWLPKRERSSYRP+RKDKRAA
Sbjct: 1037 RYPKGFDPANPGPPPDPERWLPKRERSSYRPKRKDKRAA 1075

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841469|ref|XP_002888616.1| hypothetical protein ARALYDRAFT_475871 [Arabidopsis lyrata subsp. lyrata] gi|297334457|gb|EFH64875.1| hypothetical protein ARALYDRAFT_475871 [Arabidopsis lyrata subsp. lyrata]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 314/431 (72%), Positives = 371/431 (86%), Gaps = 4/431 (0%)

Query: 4   MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63
           + L   RIGQETLT+D+ +++ IE ELAPI+VQLAYVQQ+LG TQE+  +Y DIIKRNLA
Sbjct: 203 LLLTAKRIGQETLTEDDCSDEYIETELAPISVQLAYVQQVLGQTQESTSSYVDIIKRNLA 262

Query: 64  DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 123
           DE S AVAVNNLVA KG KD++D L+K DR+KEKD QNFQL++ LD +LS K +EAIYAN
Sbjct: 263 DEPSLAVAVNNLVASKGSKDISDGLRKFDRLKEKDSQNFQLSQELDAKLSQKNKEAIYAN 322

Query: 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183
           RVLLLLHANKMDQAREL AALP MFP+SV+P LLQAAVLVRENKA KAEELLGQ AEK P
Sbjct: 323 RVLLLLHANKMDQARELSAALPGMFPESVIPTLLQAAVLVRENKAAKAEELLGQCAEKFP 382

Query: 184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 243
           +KSK++LLARAQ+AA+A+HP +AAESL+KIPDIQH+PATVAT+VALKERAGD DGAAAVL
Sbjct: 383 EKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALKERAGDNDGAAAVL 442

Query: 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT 303
           DSAIKWW N+MTE NKLSV+M EAA+FKLRHG+EE+AS L+EE+VK H S +ALVGLVTT
Sbjct: 443 DSAIKWWSNSMTESNKLSVMMPEAAAFKLRHGQEEEASRLYEEIVKNHNSTDALVGLVTT 502

Query: 304 SAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKA 363
            A V+V+KAE+YEK+LKPLPGL  VDVD+LEKTSGAK +E A+      +  E   K+KA
Sbjct: 503 LARVNVEKAETYEKQLKPLPGLKAVDVDNLEKTSGAKPIEGAAA----SSSQEEVKKEKA 558

Query: 364 KKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREK 423
           K+KRKRKP+YPKGFDPANPGPPPDPERWLP+RERSSYRP+RKDKRAAQ+RGSQGAV ++K
Sbjct: 559 KRKRKRKPKYPKGFDPANPGPPPDPERWLPRRERSSYRPKRKDKRAAQIRGSQGAVTKDK 618

Query: 424 HDAGAAGASSN 434
            +A  + + SN
Sbjct: 619 QEAAPSTSKSN 629

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220511|ref|NP_176936.1| signal recognition particle subunit SRP72 [Arabidopsis thaliana] gi|11072013|gb|AAG28892.1|AC008113_8 F12A21.17 [Arabidopsis thaliana] gi|28392947|gb|AAO41909.1| unknown protein [Arabidopsis thaliana] gi|28827690|gb|AAO50689.1| unknown protein [Arabidopsis thaliana] gi|332196560|gb|AEE34681.1| signal recognition particle subunit SRP72 [Arabidopsis thaliana]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 317/444 (71%), Positives = 373/444 (84%), Gaps = 10/444 (2%)

Query: 4   MYLIFVRIGQETLTDDNFA--EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN 61
           + L   RIGQETL DD+ A  +++IEIELAPIAVQLAYVQQ+LG TQE+  +Y D IKRN
Sbjct: 213 LLLTARRIGQETLNDDDIALTDEEIEIELAPIAVQLAYVQQILGQTQESTSSYVDFIKRN 272

Query: 62  LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIY 121
           LADE S AVAVNNLVALKG KD++D L+K D +K+KD Q FQL++ LD +LS K +EAIY
Sbjct: 273 LADEPSLAVAVNNLVALKGFKDISDGLRKFDLLKDKDSQTFQLSQALDAKLSQKHKEAIY 332

Query: 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK 181
           ANRVLLLLHANKMDQAREL AALP MFP+S++P LLQAAVLVRENKA KAEELLGQ AEK
Sbjct: 333 ANRVLLLLHANKMDQARELCAALPGMFPESIIPTLLQAAVLVRENKAAKAEELLGQCAEK 392

Query: 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA 241
            P+KSK++LLARAQ+AA+A+HP +AAESL+KIPDIQH+PATVAT+VALKERAGD DGAAA
Sbjct: 393 FPEKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALKERAGDNDGAAA 452

Query: 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV 301
           VLDSAIKWW N+MTE +KL V+M EAA+FKLRHG+EE+AS L+EE+VK H S +ALVGLV
Sbjct: 453 VLDSAIKWWSNSMTESSKLRVLMPEAAAFKLRHGQEEEASRLYEEIVKNHNSTDALVGLV 512

Query: 302 TTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKD 361
           TT A V+V+KAESYEK+LKPLPGL  VDVD LEKT GAK +E A+      +  E   K+
Sbjct: 513 TTLARVNVEKAESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGAA----ASSSQEEVKKE 568

Query: 362 KAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVR 421
           KAK+KRKRKP+YPKGFDPANPGPPPDPERWLP+RERSSY+P+RKDKRAAQ+RGSQGAV +
Sbjct: 569 KAKRKRKRKPKYPKGFDPANPGPPPDPERWLPRRERSSYKPKRKDKRAAQIRGSQGAVTK 628

Query: 422 EKHDAGAAGASSNSTSSQATSSKG 445
           +K +A    A S S S+Q  SSKG
Sbjct: 629 DKQEA----APSTSKSNQVASSKG 648

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28392976|gb|AAO41923.1| unknown protein [Arabidopsis thaliana]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/444 (65%), Positives = 356/444 (80%), Gaps = 10/444 (2%)

Query: 4   MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63
           + L  +RIGQETLT+ ++++D IE +LAPI+VQLAYVQQ+LG TQE+  +Y DIIKRNLA
Sbjct: 88  LLLTAMRIGQETLTEGDYSDDYIETQLAPISVQLAYVQQVLGQTQESKSSYVDIIKRNLA 147

Query: 64  DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 123
           DES  A+AVNNLVALKG KD++D L+K D +K+KD QNFQL++ LD +LS K +EAIYAN
Sbjct: 148 DES-LALAVNNLVALKGSKDISDGLRKFDLLKDKDSQNFQLSQELDAKLSHKHKEAIYAN 206

Query: 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183
           RVLLLLHANKMDQAREL A LP MFP+SV+P LLQAAVLVRENKA KAEELLGQ AE  P
Sbjct: 207 RVLLLLHANKMDQARELCATLPGMFPESVIPTLLQAAVLVRENKAAKAEELLGQCAENFP 266

Query: 184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 243
           +KSK++LLARAQ+AA+A+HP +AAESL+KIPDIQH+PATVAT+VAL+ERAGD DGA AVL
Sbjct: 267 EKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALRERAGDNDGATAVL 326

Query: 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT 303
           DSAI+WW ++MT+ N L ++M  AA+FKLRHG+EE+AS L+EE+VK H S +ALVGLVTT
Sbjct: 327 DSAIRWWSDSMTDSNMLRILMPVAAAFKLRHGQEEEASRLYEEIVKNHNSTDALVGLVTT 386

Query: 304 SAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKA 363
            A V+V+KAE+YEK+LKPLPGL  VDVD+LEKTSGAK +E  S   +++   + +   + 
Sbjct: 387 LARVNVEKAEAYEKQLKPLPGLKAVDVDNLEKTSGAKPIEGISAASLSQEEVKKEKVKRK 446

Query: 364 KKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVREK 423
           +K +       KGFD  N GP PDPERWLP+RERSSYRP+RKDKRAAQ+RGSQGA+ + K
Sbjct: 447 RKPKYP-----KGFDLENSGPTPDPERWLPRRERSSYRPKRKDKRAAQIRGSQGALTKVK 501

Query: 424 HDAGAAGASSNSTSSQATSSKGAA 447
            +     A S S S QA  SK  A
Sbjct: 502 QEE----APSTSKSKQAAISKANA 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
TAIR|locus:2008610	664	AT1G67680 [Arabidopsis thalian	0.721	0.507	0.719	8.1e-140
TAIR|locus:2008540	651	AT1G67650 [Arabidopsis thalian	0.732	0.525	0.682	3.6e-135
UNIPROTKB|Q5ZKZ5	671	SRP72 "Uncharacterized protein	0.687	0.478	0.354	8.6e-50
UNIPROTKB|E1BVX9	671	SRP72 "Uncharacterized protein	0.687	0.478	0.351	2e-49
UNIPROTKB|P33731	671	SRP72 "Signal recognition part	0.676	0.470	0.336	1.1e-48
UNIPROTKB|E1BB38	671	SRP72 "Uncharacterized protein	0.676	0.470	0.336	3.4e-48
UNIPROTKB|O76094	671	SRP72 "Signal recognition part	0.687	0.478	0.330	3.4e-48
ZFIN|ZDB-GENE-030131-5546	670	srp72 "signal recognition part	0.698	0.486	0.321	3.6e-47
UNIPROTKB|D4A7R0	671	Srp72 "Protein Srp72" [Rattus	0.676	0.470	0.296	2.7e-38
RGD|1564787	395	Srp72 "signal recognition part	0.509	0.602	0.312	3.1e-37

TAIR|locus:2008610 AT1G67680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1227 (437.0 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
 Identities = 244/339 (71%), Positives = 285/339 (84%)

Query:    10 RIGQETLTDDNFA--EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS 67
             RIGQETL DD+ A  +++IEIELAPIAVQLAYVQQ+LG TQE+  +Y D IKRNLADE S
Sbjct:   219 RIGQETLNDDDIALTDEEIEIELAPIAVQLAYVQQILGQTQESTSSYVDFIKRNLADEPS 278

Query:    68 FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLL 127
              AVAVNNLVALKG KD++D L+K D +K+KD Q FQL++ LD +LS K +EAIYANRVLL
Sbjct:   279 LAVAVNNLVALKGFKDISDGLRKFDLLKDKDSQTFQLSQALDAKLSQKHKEAIYANRVLL 338

Query:   128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187
             LLHANKMDQAREL AALP MFP+S++P LLQAAVLVRENKA KAEELLGQ AEK P+KSK
Sbjct:   339 LLHANKMDQARELCAALPGMFPESIIPTLLQAAVLVRENKAAKAEELLGQCAEKFPEKSK 398

Query:   188 IILLXXXXXXXXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247
             ++LL         +HP +AAESL+KIPDIQH+PATVAT+VALKERAGD DGAAAVLDSAI
Sbjct:   399 LVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALKERAGDNDGAAAVLDSAI 458

Query:   248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHV 307
             KWW N+MTE +KL V+M EAA+FKLRHG+EE+AS L+EE+VK H S +ALVGLVTT A V
Sbjct:   459 KWWSNSMTESSKLRVLMPEAAAFKLRHGQEEEASRLYEEIVKNHNSTDALVGLVTTLARV 518

Query:   308 DVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESAS 346
             +V+KAESYEK+LKPLPGL  VDVD LEKT GAK +E A+
Sbjct:   519 NVEKAESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGAA 557

GO:0005737 "cytoplasm" evidence=ISM

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2008540 AT1G67650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1187 (422.9 bits), Expect = 3.6e-135, Sum P(2) = 3.6e-135
 Identities = 234/343 (68%), Positives = 285/343 (83%)

Query:     4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63
             + L  +RIGQETLT+ ++++D IE +LAPI+VQLAYVQQ+LG TQE+  +Y DIIKRNLA
Sbjct:   203 LLLTAMRIGQETLTEGDYSDDYIETQLAPISVQLAYVQQVLGQTQESKSSYVDIIKRNLA 262

Query:    64 DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 123
             DES  A+AVNNLVALKG KD++D L+K D +K+KD QNFQL++ LD +LS K +EAIYAN
Sbjct:   263 DES-LALAVNNLVALKGSKDISDGLRKFDLLKDKDSQNFQLSQELDAKLSHKHKEAIYAN 321

Query:   124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183
             RVLLLLHANKMDQAREL A LP MFP+SV+P LLQAAVLVRENKA KAEELLGQ AE  P
Sbjct:   322 RVLLLLHANKMDQARELCATLPGMFPESVIPTLLQAAVLVRENKAAKAEELLGQCAENFP 381

Query:   184 DKSKIILLXXXXXXXXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 243
             +KSK++LL         +HP +AAESL+KIPDIQH+PATVAT+VAL+ERAGD DGA AVL
Sbjct:   382 EKSKLVLLARAQIAASASHPHVAAESLSKIPDIQHLPATVATIVALRERAGDNDGATAVL 441

Query:   244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT 303
             DSAI+WW ++MT+ N L ++M  AA+FKLRHG+EE+AS L+EE+VK H S +ALVGLVTT
Sbjct:   442 DSAIRWWSDSMTDSNMLRILMPVAAAFKLRHGQEEEASRLYEEIVKNHNSTDALVGLVTT 501

Query:   304 SAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESAS 346
              A V+V+KAE+YEK+LKPLPGL  VDVD+LEKTSGAK +E  S
Sbjct:   502 LARVNVEKAEAYEKQLKPLPGLKAVDVDNLEKTSGAKPIEGIS 544

GO:0005737 "cytoplasm" evidence=ISM

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q5ZKZ5 SRP72 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 447 (162.4 bits), Expect = 8.6e-50, Sum P(2) = 8.6e-50
 Identities = 118/333 (35%), Positives = 181/333 (54%)

Query:    13 QETLTDDN-FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71
             +++L++D+   E+DIE ELA I  Q+AY+ QL G T++A   Y  IIK    D    AV 
Sbjct:   208 RQSLSEDSDVTEEDIEAELAIIHGQMAYIMQLQGRTEDALQLYNQIIKLKPTDVGLLAVI 267

Query:    72 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 131
              NN++ +   ++V DS KK   +K   + N   A  ++ +LS KQ +AI  N+ LL ++ 
Sbjct:   268 ANNIITINKDQNVFDSKKK---VK---LTN---AEGVEHKLSKKQLQAIEFNKALLAMYT 318

Query:   132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191
             N+ +Q R+L A+L    P+ ++P+L+QAA L RE +  KA  LL  FAE+ P  +  I L
Sbjct:   319 NQAEQCRKLSASLQSQSPEHLLPVLIQAAQLCREKQHTKAIGLLQDFAEQHPANAAEIKL 378

Query:   192 XXXXXXXXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251
                           A   L  I ++QH P  V+ LV +     DID A  V   AI+W+ 
Sbjct:   379 TMAQLKIAQGSVTKACMILRSIEELQHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQ 438

Query:   252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVD 310
                 E      +++EAA+FKL+HGR+++A    EEL K +   +  L  L++  + VD +
Sbjct:   439 QFQPESPVHLSLIREAANFKLKHGRKKEAISDLEELWKQNPKDVHTLAQLISAYSLVDPE 498

Query:   311 KAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             KA+   K L     ++  VDVD+LE + GA +V
Sbjct:   499 KAKVLSKHLPSSDTMSLKVDVDALENSHGATYV 531

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

UNIPROTKB|E1BVX9 SRP72 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 444 (161.4 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 117/333 (35%), Positives = 181/333 (54%)

Query:    13 QETLTDDN-FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71
             +++L++D+   E+DIE ELA I  Q+AY+ QL G T++A   Y  IIK    D    AV 
Sbjct:   208 RQSLSEDSDVTEEDIEAELAIIHGQMAYIMQLQGRTEDALQLYNQIIKLKPTDVGLLAVI 267

Query:    72 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 131
              NN++ +   ++V DS KK   +K   + N   A  ++ +LS KQ +AI  N+ LL ++ 
Sbjct:   268 ANNIITINKDQNVFDSKKK---VK---LTN---AEGVEHKLSKKQLQAIEFNKALLAMYT 318

Query:   132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191
             N+ +Q R+L A+L    P+ ++P+L+QAA L RE +  KA  LL  FAE+ P  +  I L
Sbjct:   319 NQAEQCRKLSASLQSQSPEHLLPVLIQAAQLCREKQHTKAIGLLQDFAEQHPANAAEIKL 378

Query:   192 XXXXXXXXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251
                           A   L  I ++QH P  V+ LV +     DID A  V   AI+W+ 
Sbjct:   379 TMAQLKIAQGSVTKACMILRSIEELQHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQ 438

Query:   252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVD 310
                 +      +++EAA+FKL+HGR+++A    EEL K +   +  L  L++  + VD +
Sbjct:   439 QFQAKSPVHLSLIREAANFKLKHGRKKEAISDLEELWKQNPKDVHTLAQLISAYSLVDPE 498

Query:   311 KAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             KA+   K L     ++  VDVD+LE + GA +V
Sbjct:   499 KAKVLSKHLPSSDTMSLKVDVDALENSHGATYV 531

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|P33731 SRP72 "Signal recognition particle 72 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 110/327 (33%), Positives = 181/327 (55%)

Query:    18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
             D +  E+D + ELA I  Q+AY+ QL G T+EA   Y  IIK    D    AV  NN++ 
Sbjct:   213 DSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIIT 272

Query:    78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
             +   ++V DS KK   +K   + N   A  ++ +LS KQ +AI  N+ LL ++ N+ +Q 
Sbjct:   273 INKDQNVFDSKKK---VK---LTN---AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323

Query:   138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLXXXXXX 197
             R++ A+L    P+ ++P+L+QAA L RE +  KA ELL +F+++ P+ +  I L      
Sbjct:   324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383

Query:   198 XXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
                 +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ N   + 
Sbjct:   384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443

Query:   258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYE 316
             +    +++EAA+FKL++GR+++A    E+L K +   I  L  L++  + VD +KA++  
Sbjct:   444 SAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503

Query:   317 KRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             K L     ++  VDV++LE + GA ++
Sbjct:   504 KHLPSSDSMSLKVDVEALENSPGATYI 530

GO:0005829 "cytosol" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0042493 "response to drug" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|E1BB38 SRP72 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 432 (157.1 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
 Identities = 110/327 (33%), Positives = 180/327 (55%)

Query:    18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
             D +  E+D + ELA I  Q+AY+ QL G T+EA   Y  IIK    D +  AV  NN++ 
Sbjct:   213 DSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVALLAVIANNIIT 272

Query:    78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
             +   ++V DS KK   +K   + N   A  ++ +LS KQ +AI  N+ LL ++ N+ +Q 
Sbjct:   273 INKDQNVFDSKKK---VK---LTN---AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323

Query:   138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLXXXXXX 197
             R++ A+L    P+ ++P+L+QAA L RE +  KA ELL  ++++ P+ +  I L      
Sbjct:   324 RKISASLQSQSPERLLPVLIQAAQLCREKQHTKAIELLQDYSDQHPENAAEIKLTMAQLK 383

Query:   198 XXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
                 +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ N   + 
Sbjct:   384 ISQGNISKACLILRSIDELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443

Query:   258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYE 316
                  +++EAA+FKL++GR+++A    E+L K +   I  L  L++  + VD +KA++  
Sbjct:   444 TAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503

Query:   317 KRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             K L     ++  VDV++LE + GA +V
Sbjct:   504 KHLPSSDSMSLKVDVEALENSPGATYV 530

GO:0042493 "response to drug" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|O76094 SRP72 "Signal recognition particle 72 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
 Identities = 110/333 (33%), Positives = 186/333 (55%)

Query:    13 QETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71
             + +L++D +  E+D + ELA I  Q+AY+ QL G T+EA   Y  IIK    D    AV 
Sbjct:   207 RRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVI 266

Query:    72 VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHA 131
              NN++ +   ++V DS KK   +K   + N   A  ++ +LS KQ +AI  N+ LL ++ 
Sbjct:   267 ANNIITINKDQNVFDSKKK---VK---LTN---AEGVEFKLSKKQLQAIEFNKALLAMYT 317

Query:   132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191
             N+ +Q R++ A+L    P+ ++P+L+QAA L RE +  KA ELL +F+++ P+ +  I L
Sbjct:   318 NQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKL 377

Query:   192 XXXXXXXXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251
                       +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ 
Sbjct:   378 TMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQ 437

Query:   252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVD 310
             N   +      +++EAA+FKL++GR+++A    ++L K +   I  L  L++  + VD +
Sbjct:   438 NHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPE 497

Query:   311 KAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             KA++  K L     ++  VDV++LE ++GA ++
Sbjct:   498 KAKALSKHLPSSDSMSLKVDVEALENSAGATYI 530

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IPI

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-5546 srp72 "signal recognition particle 72" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 3.6e-47, Sum P(2) = 3.6e-47
 Identities = 109/339 (32%), Positives = 183/339 (53%)

Query:    18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
             D +  E+DI+ ELA I  Q+AYV QL G T++A   Y+ +IK   +D    AV  NN++ 
Sbjct:   210 DSDMTEEDIDAELAVIHSQMAYVIQLQGRTEDALQLYSQVIKLKPSDVGLLAVTANNIIT 269

Query:    78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
             +   ++V DS KK   +K   + N   A  ++ +L+ KQ +AI  N+ LL ++ N+ DQ 
Sbjct:   270 INKDQNVFDSKKK---VK---LTN---AEGVEHKLAKKQLQAIEINKALLAMYTNQADQC 320

Query:   138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLXXXXXX 197
              +L+++L    P    P+L+Q A L RE +  KA ELL +F+++ P+ +  I L      
Sbjct:   321 NKLLSSLQTQNPTHPRPVLIQVAQLCREKQHSKAIELLQRFSDQHPESASGIKLTMAQLY 380

Query:   198 XXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
                 H   A + L  I + ++ P  ++ L+ +     DID A  V   AI+++ +     
Sbjct:   381 LTQGHVTKACDILKSIEEFKYKPGMISALITMYTHEEDIDSAIDVFSQAIQYYQSEQPGS 440

Query:   258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYE 316
             +    +++EAA++KL++GR+++A+   E+L K +   I  L  L++  + VD DKA++  
Sbjct:   441 SIHLSLVREAANYKLKYGRKKEATSDLEQLWKQNTNDIHTLAQLISAYSLVDQDKAKALS 500

Query:   317 KRLKPLPGLNG--VDVDSLEKTSGAKHVESASYFEVNEA 353
             K L P P      VDVD LE + GA ++   +   V E+
Sbjct:   501 KHL-PSPDKMAFNVDVDELENSHGATYIRKKAAKVVGES 538

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

UNIPROTKB|D4A7R0 Srp72 "Protein Srp72" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 97/327 (29%), Positives = 165/327 (50%)

Query:    18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
             D +  E+D + ELA I  Q+AY+ QL G  +EA   Y  IIK    D +  AV  NN++ 
Sbjct:   213 DSDGTEEDPQAELAIIHGQMAYIMQLQGRIEEALQLYNQIIKLKPTDVALLAVIANNIIT 272

Query:    78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
                   +N   KK   ++   + NF   R    R S + +EAI   + + + + +     
Sbjct:   273 ------INKDKKKFRFVQVVKLLNFWGLR--GAR-SRRLKEAICMRKKMFVRYTDYTKCC 323

Query:   138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLXXXXXX 197
             R+++     + P  +  +L+QAA L RE +  KA ELL +F+++ P+ +  I L      
Sbjct:   324 RKIIKTSQSLSPALLCXVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383

Query:   198 XXXNHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
                 +   A   L  I +++H P  V+ LV +     DID A  V   AI+W+ +   + 
Sbjct:   384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQSHQPKS 443

Query:   258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYE 316
                  +++EAA+FKL++GR+++A    E+L K +   I  L  L++  + VD +KA++  
Sbjct:   444 PAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYSLVDPEKAKALS 503

Query:   317 KRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             K L     ++  VDV++LE + GA ++
Sbjct:   504 KHLPSSDSMSLKVDVEALENSPGATYI 530

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

RGD|1564787 Srp72 "signal recognition particle 72" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 75/240 (31%), Positives = 135/240 (56%)

Query:   105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164
             A  ++ +LS +Q +AI  N+ LL ++ N+ +Q R++ ++L    P+ ++P+L+QAA L R
Sbjct:    15 AEGVEFKLSKRQLQAIEFNKALLAMYTNQAEQCRKIASSLQSQSPEHLLPVLIQAAQLCR 74

Query:   165 ENKAGKAEELLGQFAEKLPDKSKIILLXXXXXXXXXNHPFIAAESLAKIPDIQHMPATVA 224
             E +  KA ELL +F+++ P+ +  I L          +   A   L  I +++H P  V+
Sbjct:    75 EKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVS 134

Query:   225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 284
              LV +     DID A  V   AI+W+ +   +      +++EAA+FKL++GR+++A    
Sbjct:   135 ALVTMYSHEEDIDSAIEVFTQAIQWYQSHQPKSPAHLSLIREAANFKLKYGRKKEAVSDL 194

Query:   285 EELVKTHGS-IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLN-GVDVDSLEKTSGAKHV 342
             E+L K +   I  L  L++  + VD +KA++  K L     ++  VDV++LE + GA ++
Sbjct:   195 EQLWKQNSKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSPGATYI 254

GO:0005047 "signal recognition particle binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	467
pfam08492	57	pfam08492, SRP72, SRP72 RNA-binding domain	6e-15
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002

>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain

 Score = 68.6 bits (168), Expect = 6e-15
 Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 360 KDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP 402
           K K   K+KRKP+ PK F   NP   PDPERWLP R+RS YRP
Sbjct: 18  KKKKSAKKKRKPKLPKNF---NPVVTPDPERWLPMRDRSYYRP 57

This region has been identified as the binding site of the SRP72 protein to SRP RNA. Length = 57

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 15/220 (6%)

Query: 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG 169
           L + PK   AI A   L L   N+ ++A   +    ++ P  + P L  A   + + +  
Sbjct: 526 LTIDPKNLRAILALAGLYLRTGNE-EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584

Query: 170 KAEELLGQFAEKLPDKSKII-LLARAQVAAAANHPFIAA-ESLAKIPDIQHMPATVATLV 227
           KA  +L + A+  PD  +   +L RAQ+AA   +  +++ + L  +       A +  L 
Sbjct: 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSALA-LLLLA 642

Query: 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 287
                  +   A   L  A++        DN  + I    A   L   R E A  + + L
Sbjct: 643 DAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGL--AQLLLAAKRTESAKKIAKSL 695

Query: 288 VKTHGSIEALVGLVTTSAHVD---VDKAESYEKRLKPLPG 324
            K H        L               ++Y K LK  P 
Sbjct: 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
KOG2376	652	consensus Signal recognition particle, subunit Srp	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
PF08492	59	SRP72: SRP72 RNA-binding domain; InterPro: IPR0136	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.72
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.67
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.62
PRK11189	296	lipoprotein NlpI; Provisional	99.61
PRK12370	553	invasion protein regulator; Provisional	99.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.58
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.57
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.53
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.52
KOG2003	840	consensus TPR repeat-containing protein [General f	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.52
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.43
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.42
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.39
PLN03218	1060	maturation of RBCL 1; Provisional	99.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.38
PLN03218	1060	maturation of RBCL 1; Provisional	99.37
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.35
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.34
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
PRK14574	822	hmsH outer membrane protein; Provisional	99.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.3
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.29
PRK14574	822	hmsH outer membrane protein; Provisional	99.29
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.27
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.26
KOG2076	895	consensus RNA polymerase III transcription factor	99.26
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.26
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.25
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.24
KOG1125	579	consensus TPR repeat-containing protein [General f	99.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.23
PLN03077	857	Protein ECB2; Provisional	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.15
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.14
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.12
KOG1125	579	consensus TPR repeat-containing protein [General f	99.12
PLN03077	857	Protein ECB2; Provisional	99.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.1
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.09
KOG1129	478	consensus TPR repeat-containing protein [General f	99.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.02
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.02
PRK15359	144	type III secretion system chaperone protein SscB;	99.01
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.01
PRK15359	144	type III secretion system chaperone protein SscB;	99.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
PLN02789	320	farnesyltranstransferase	98.99
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.96
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.92
KOG2076	895	consensus RNA polymerase III transcription factor	98.91
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.91
PLN02789	320	farnesyltranstransferase	98.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
KOG2003	840	consensus TPR repeat-containing protein [General f	98.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.85
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.82
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.74
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.69
PRK04841	903	transcriptional regulator MalT; Provisional	98.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.66
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.65
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.61
KOG0553	304	consensus TPR repeat-containing protein [General f	98.59
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.59
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.59
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.58
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.58
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.57
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.55
KOG0553	304	consensus TPR repeat-containing protein [General f	98.55
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.53
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.52
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.49
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.44
PRK10803	263	tol-pal system protein YbgF; Provisional	98.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.39
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.37
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.37
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.31
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.3
PRK04841	903	transcriptional regulator MalT; Provisional	98.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.29
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.17
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.17
PF13371	73	TPR_9: Tetratricopeptide repeat	98.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.15
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.12
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.09
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.07
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.06
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.04
PF12688	120	TPR_5: Tetratrico peptide repeat	98.02
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.0
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.99
PF13512	142	TPR_18: Tetratricopeptide repeat	97.94
PF12688	120	TPR_5: Tetratrico peptide repeat	97.93
PRK15331	165	chaperone protein SicA; Provisional	97.9
PRK15331	165	chaperone protein SicA; Provisional	97.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.85
PF13371	73	TPR_9: Tetratricopeptide repeat	97.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
KOG1585	308	consensus Protein required for fusion of vesicles	97.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.79
PRK11906	458	transcriptional regulator; Provisional	97.78
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.77
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.77
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.76
PRK11906	458	transcriptional regulator; Provisional	97.72
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.71
PF13512	142	TPR_18: Tetratricopeptide repeat	97.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.65
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.55
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.55
KOG4234	271	consensus TPR repeat-containing protein [General f	97.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.51
KOG1586	288	consensus Protein required for fusion of vesicles	97.42
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.37
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.36
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.2
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.19
PF13428	44	TPR_14: Tetratricopeptide repeat	97.17
KOG1586	288	consensus Protein required for fusion of vesicles	97.17
PF13428	44	TPR_14: Tetratricopeptide repeat	97.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.15
KOG4234	271	consensus TPR repeat-containing protein [General f	97.13
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.1
KOG4555	175	consensus TPR repeat-containing protein [Function	97.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.04
KOG2471	696	consensus TPR repeat-containing protein [General f	97.03
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.01
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.97
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.97
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.97
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.92
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.88
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.81
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.69
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.6
PF13431	34	TPR_17: Tetratricopeptide repeat	96.58
KOG1585	308	consensus Protein required for fusion of vesicles	96.44
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.2
KOG4555	175	consensus TPR repeat-containing protein [Function	96.19
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.18
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.16
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.14
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.97
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.71
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.58
KOG2471	696	consensus TPR repeat-containing protein [General f	95.55
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.5
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.37
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.24
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.94
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.82
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.73
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.56
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.53
PF13431	34	TPR_17: Tetratricopeptide repeat	94.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.48
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.44
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.38
PRK10941	269	hypothetical protein; Provisional	94.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.22
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.92
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.82
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	93.77
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.65
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.57
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.53
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.39
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.33
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.19
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.08
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.0
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	92.76
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.54
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	91.86
KOG1258	577	consensus mRNA processing protein [RNA processing	91.72
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.1
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.69
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.46
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.36
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.32
KOG3364	149	consensus Membrane protein involved in organellar	90.16
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.04
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	90.0
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.51
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	89.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.19
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.14
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	88.92
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.58
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	88.17
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.36
PF13041	50	PPR_2: PPR repeat family	86.78
PRK10941	269	hypothetical protein; Provisional	86.7
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	86.29
KOG1258	577	consensus mRNA processing protein [RNA processing	86.17
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.62
KOG2422	665	consensus Uncharacterized conserved protein [Funct	84.67
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	84.08
COG2912	269	Uncharacterized conserved protein [Function unknow	83.8
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.68
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	83.61
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.47
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.22
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.07
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	82.95
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	82.91
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.18
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.9
KOG1463	411	consensus 26S proteasome regulatory complex, subun	81.88
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.7
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	81.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	81.13
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.43
PF12854	34	PPR_1: PPR repeat	80.16

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-78  Score=596.39  Aligned_cols=426  Identities=51%  Similarity=0.709  Sum_probs=374.8

Q ss_pred             cchHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC
Q 012265            2 ILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP   81 (467)
Q Consensus         2 ~~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~   81 (467)
                      |..|..|+++|+++|+++|..+|||+.||++|++|+|||+|++|+.+||..+|..++..+|.|.++.+|+.|||+++.++
T Consensus       195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d  274 (652)
T KOG2376|consen  195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD  274 (652)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH
Q 012265           82 KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV  161 (467)
Q Consensus        82 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l  161 (467)
                      .++++......    ...+.+.+.+.++++|+..|+..+++|.+++.+++|+.++++++...+...+|.+....++.+..
T Consensus       275 ~~~~d~~~l~~----k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t  350 (652)
T KOG2376|consen  275 QNYFDGDLLKS----KKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEAT  350 (652)
T ss_pred             cccCchHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence            98887421111    11234566777889999999999999999999999999999999999999999998888888888


Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHh--------ccccCCCChhHHHHHHHHHHHc
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA--------KIPDIQHMPATVATLVALKERA  233 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~--------~~~~~~~~p~~~~~l~~ly~~~  233 (467)
                      .++...+.+|+.+|..+.+.+|+....+.|+++|+.+.+|++..|+.+|.        ++.++.+.|+++..++.+|...
T Consensus       351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~  430 (652)
T KOG2376|consen  351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI  430 (652)
T ss_pred             HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence            88888999999999999999999866667999999999999999999999        7888888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCChhHH
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAHVDVDKA  312 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d~~kA  312 (467)
                      ++.+.|.++|.+|+.||....+....+..+|..++.|.++.|+.++|..+|+++++.+| |.++++++|.+|+.+|+++|
T Consensus       431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka  510 (652)
T KOG2376|consen  431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKA  510 (652)
T ss_pred             cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999988877778888999999999999999999999999999884 68999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCcChhhhhhhcCCCcccccccccccccccCCCcchhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 012265          313 ESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWL  392 (467)
Q Consensus       313 ~~l~~~L~~~~~~~~vDvd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~krkrk~~~pk~~dp~~~~~~pDPERWL  392 (467)
                      +.|.+.|||.+.+.+||||+||.+.|+++.......+............++|++||||.++||||||   .++|||||||
T Consensus       511 ~~l~k~L~p~~~l~~vdVd~LE~s~ga~~~~~~k~ta~S~~~~~~~~~~kKKk~rKrkgk~pknyn~---~~tPDPERWL  587 (652)
T KOG2376|consen  511 ESLSKKLPPLKGLKAVDVDALEKSDGAKYSEAYKKTAVSQVEEKKSKELKKKKKRKRKGKLPKNYNP---KVTPDPERWL  587 (652)
T ss_pred             HHHhhcCCCcccchhcCchHhhhccCcchhhhhccccccchhhccchhhhhhcccccccCCcccCCC---CCCCChhhcc
Confidence            9999999999998899999999988999987741111111111111112334458899999999999   5899999999


Q ss_pred             CccccccCCccchhhhhhhhcCCCCCcccccc-ccCCCCCCCC
Q 012265          393 PKRERSSYRPRRKDKRAAQVRGSQGAVVREKH-DAGAAGASSN  434 (467)
Q Consensus       393 P~~eRs~yr~k~k~~~~~~~~gtQG~~~~~~~-~~~~~~~~~~  434 (467)
                      |+||||+||||||++++++++|||||++.++. ..++++++|.
T Consensus       588 P~reRS~yr~KrK~k~~~~~kgtQG~~~~~~se~v~~~~~s~~  630 (652)
T KOG2376|consen  588 PRRERSTYRPKRKGKRAAIIKGTQGGAANDKSEQVPSTSKSPR  630 (652)
T ss_pred             cchhccccCcccccchhhhhccccccccccchhhccCCCCCCC
Confidence            99999999999998888899999999998776 3345666666

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.7e-19  Score=178.64  Aligned_cols=252  Identities=12%  Similarity=0.070  Sum_probs=169.3

Q ss_pred             HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265           26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      .++-++.+|.-||-++-.+|++..|+..|+++++++|.-..+++-++|=+-.++.+.++...+.+...+   .       
T Consensus       213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---r-------  282 (966)
T KOG4626|consen  213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL---R-------  282 (966)
T ss_pred             hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc---C-------
Confidence            345577888888888888888888888888888888887777765544333334444444433332221   1       


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                               +...+++-|.+.+|..+|.+|-|+..+++.+...|..++++-..|..+-..|+..+|+.+|.+++...|+.
T Consensus       283 ---------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h  353 (966)
T KOG4626|consen  283 ---------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH  353 (966)
T ss_pred             ---------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence                     12345666777777777777777777777777777777777666666666677777777777777777777


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                      .+.+ ..||.+|.++|.+++|...|++++++.+ ..+..+.|+.+|.++|++++|+..|++|+..       .+.+...+
T Consensus       354 adam-~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-------~P~fAda~  425 (966)
T KOG4626|consen  354 ADAM-NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-------KPTFADAL  425 (966)
T ss_pred             HHHH-HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-------CchHHHHH
Confidence            6655 6777777777777777777777776543 2334566777777777777777777777653       23445555


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS  304 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~  304 (467)
                      ..+|..|-.+|+.+.|+..|.+++..+|. .++..+|...|
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY  466 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence            66666666666666666666666666664 45666666655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=1.8e-17  Score=178.90  Aligned_cols=257  Identities=15%  Similarity=0.146  Sum_probs=201.4

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      +..|.+.+++.+.....     ....+.++..+|.++..+|++++|+..|++++..+|.+...++..+..+...   ++.
T Consensus       310 y~~A~~~~~~al~~~~~-----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~---g~~  381 (615)
T TIGR00990       310 YEEAARAFEKALDLGKL-----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL---GDP  381 (615)
T ss_pred             HHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---CCH
Confidence            55777788887764422     2345567888999999999999999999999999998877665443333333   345


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                      .++...+.+.....|                ....++++++.+++..|++++|+..+++++..+|++..+++..|.++..
T Consensus       382 ~eA~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       382 DKAEEDFDKALKLNS----------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            555555544332221                1235788999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-h----h---HHHHHHHHHHHcCCH
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-P----A---TVATLVALKERAGDI  236 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p----~---~~~~l~~ly~~~g~~  236 (467)
                      .|++++|+..|++++..+|++.... ..+|.+|...|++++|+..|++++.+.+. .    .   ++.....++...|++
T Consensus       446 ~g~~~eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~  524 (615)
T TIGR00990       446 EGSIASSMATFRRCKKNFPEAPDVY-NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF  524 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence            9999999999999999999998754 88999999999999999999999876431 1    1   122234455567999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ++|+.++++++...    +   .....+..+|.++++.|++++|+.+|+++++..+.
T Consensus       525 ~eA~~~~~kAl~l~----p---~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       525 IEAENLCEKALIID----P---ECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHHHHHHHHhcC----C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            99999999998752    1   22234666899999999999999999999998754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=9.2e-18  Score=168.68  Aligned_cols=250  Identities=13%  Similarity=0.099  Sum_probs=212.3

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC-CChhHHHHhhhhhhhhhhhHHHHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP-KDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      ++-+.+..+-||.||...+.+++|...|.+++...|++..++    .|+.++-.. +...-+....++..+..|+     
T Consensus       248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~----gNla~iYyeqG~ldlAI~~Ykral~~~P~-----  318 (966)
T KOG4626|consen  248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH----GNLACIYYEQGLLDLAIDTYKRALELQPN-----  318 (966)
T ss_pred             CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc----cceEEEEeccccHHHHHHHHHHHHhcCCC-----
Confidence            355788999999999999999999999999999999776554    365544322 2334444444444333333     


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                                 ...++.|.+..+-..|+..+|...+.+.+...|.+.++...+|.++..+|+.++|..+|..+++.+|+-
T Consensus       319 -----------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~  387 (966)
T KOG4626|consen  319 -----------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF  387 (966)
T ss_pred             -----------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence                       235788899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                      ... +..||.+|-++|++++|+.+|+.++.+.+ ..+.+..++..|..+|+.++|++.+.+|+..       ++.+..++
T Consensus       388 aaa-~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~-------nPt~AeAh  459 (966)
T KOG4626|consen  388 AAA-HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI-------NPTFAEAH  459 (966)
T ss_pred             hhh-hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-------CcHHHHHH
Confidence            764 58999999999999999999999999876 3456789999999999999999999999975       36677889


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS  304 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~  304 (467)
                      ..+|.+|-..|+..+|+..|+.++++.|| +++..++..|.
T Consensus       460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            99999999999999999999999999998 67877776665

>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.78  E-value=9.9e-20  Score=129.18  Aligned_cols=35  Identities=77%  Similarity=1.492  Sum_probs=32.0

Q ss_pred             hhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 012265          365 KKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP  402 (467)
Q Consensus       365 ~krkrk~~~pk~~dp~~~~~~pDPERWLP~~eRs~yr~  402 (467)
                      ++|||+++|||||||   +++||||||||++|||+|||
T Consensus        25 ~kkkRk~rlPK~~dp---~~~PDPERWLP~~dRS~yrp   59 (59)
T PF08492_consen   25 KKKKRKPRLPKNYDP---GKTPDPERWLPKRDRSYYRP   59 (59)
T ss_pred             hhhcccCCCCCCCCC---CCCCCccccCchhhhcccCC
Confidence            378889999999998   57999999999999999996

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=1.8e-16  Score=171.52  Aligned_cols=274  Identities=12%  Similarity=-0.002  Sum_probs=190.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      -++.|...++..+..+   ++     -...+..+|.++..+|++++|+..|++++..+|++..++...++.+...++..+
T Consensus        91 ~~~~A~~~l~~~l~~~---P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e  162 (656)
T PRK15174         91 QPDAVLQVVNKLLAVN---VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ  162 (656)
T ss_pred             CHHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence            3566777777777643   22     224578889999999999999999999999999888877655544444443333


Q ss_pred             hhHHHHhhhhhhhhhhhH-------------HHHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC
Q 012265           84 VNDSLKKLDRIKEKDMQN-------------FQLARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF  148 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~-------------~~~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~  148 (467)
                      +...++.+....+..+..             ......+..  +..+..........+.+++..|++++|...+..++..+
T Consensus       163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~  242 (656)
T PRK15174        163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG  242 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            333333332211110000             000000000  00000011122344567778899999999999999899


Q ss_pred             CCCchHHHHHHHHHHhcCChhH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          149 PDSVMPLLLQAAVLVRENKAGK----AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       149 P~~~~~~ll~a~l~~~~~~~~~----A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      |++..+....|.++...|++++    |+..|++++..+|++... +..+|.++..+|++++|+..|++++.+.+ ++.++
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a-~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI-VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9988888888888888999885    789999999999988765 48889999999999999999999887765 66777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ..++.+|...|++++|+..|++++...    |+.   ...+..+|.++...|++++|+..|+++++.+|+
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~----P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREK----GVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC----ccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            888999999999999999998887641    211   122333577888899999999999999988875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.77  E-value=3.9e-16  Score=158.88  Aligned_cols=266  Identities=15%  Similarity=0.071  Sum_probs=200.5

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ...+++|..+...|++++|+..|++++..+|++..++...+.-+..   .+++..+...+..+...            ..
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~------------~~  100 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR---RGEVDRAIRIHQNLLSR------------PD  100 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCcHHHHHHHHHHHhcC------------CC
Confidence            4457789999999999999999999999999887766644333322   23455555544433221            01


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH----
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK----  187 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~----  187 (467)
                      .........+++.+.+++..|++++|...++++...+|.+..+....+.++...|++++|+..++.++...|.+..    
T Consensus       101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  180 (389)
T PRK11788        101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA  180 (389)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence            1222233467788999999999999999999999888888888888888999999999999999999988876522    


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE  266 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~  266 (467)
                      ..+..++.++..+|++++|+..|+++++..+ ....+..++.+|...|++++|+.+|++++...+      ......+..
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~  254 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP------EYLSEVLPK  254 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh------hhHHHHHHH
Confidence            1235688899999999999999999987654 445677889999999999999999999886421      122234555


Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          267 AASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++.++...|++++|...|++++...|+......++..+ ...+.+.|..+...
T Consensus       255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            78889999999999999999999888765555555555 34567888777653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.76  E-value=3.2e-16  Score=169.63  Aligned_cols=294  Identities=13%  Similarity=0.054  Sum_probs=204.8

Q ss_pred             HHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhH
Q 012265            7 IFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND   86 (467)
Q Consensus         7 ~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~   86 (467)
                      .|+.+++..+....   +.     ..++..++.++...|++++|+..|++++..+|++..++...+..+...++...+.+
T Consensus        60 ~A~~l~~~~l~~~p---~~-----~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~  131 (656)
T PRK15174         60 VGLTLLSDRVLTAK---NG-----RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD  131 (656)
T ss_pred             hhHHHhHHHHHhCC---Cc-----hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            45555655555332   11     24466778888899999999999999999999999888766555544444333344


Q ss_pred             HHHhhhhhhhhhh--------------hHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC
Q 012265           87 SLKKLDRIKEKDM--------------QNFQLARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD  150 (467)
Q Consensus        87 a~~~l~~~~~~~~--------------~~~~~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~  150 (467)
                      .+.+...+.+..+              +.......+..  .+. +....++++. ..++..|++++|...++.++..+|.
T Consensus       132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~  209 (656)
T PRK15174        132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL  209 (656)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4443333211100              00000000100  000 0111233333 3477889999999999998888764


Q ss_pred             C-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH----HHHHHhccccCCC-ChhHHH
Q 012265          151 S-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI----AAESLAKIPDIQH-MPATVA  224 (467)
Q Consensus       151 ~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~----A~~~L~~~~~~~~-~p~~~~  224 (467)
                      . .....+.+.++...|++++|+..+.+++..+|++... ++.+|.+|...|++++    |+..|++++.+.+ ++.++.
T Consensus       210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~-~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~  288 (656)
T PRK15174        210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL-RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT  288 (656)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3 3334455677889999999999999999999999765 4889999999999996    8999999998876 677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTT  303 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a  303 (467)
                      .++.+|..+|++++|+.+|++++...    |++   ..++..+|.++...|++++|+..|++++..+|+. .....+..+
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l~----P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLATH----PDL---PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            99999999999999999999998752    222   2345568999999999999999999999998874 333333334


Q ss_pred             h-ccCChhHHHHHHhc
Q 012265          304 S-AHVDVDKAESYEKR  318 (467)
Q Consensus       304 ~-~~~d~~kA~~l~~~  318 (467)
                      + ...+.+.|.....+
T Consensus       362 l~~~G~~deA~~~l~~  377 (656)
T PRK15174        362 LLQAGKTSEAESVFEH  377 (656)
T ss_pred             HHHCCCHHHHHHHHHH
Confidence            4 45567888777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.76  E-value=2e-16  Score=170.75  Aligned_cols=270  Identities=14%  Similarity=0.043  Sum_probs=200.6

Q ss_pred             hhhhHHHHHHHHH---HHhCChHHHHHHHHHHhccC---CCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHH
Q 012265           29 ELAPIAVQLAYVQ---QLLGNTQEAFGAYTDIIKRN---LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNF  102 (467)
Q Consensus        29 El~~i~~qlA~v~---~~~G~~~eA~~~y~~~l~~~---p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~  102 (467)
                      ++....+++++.+   ...+++++|+..|+.++...   |.+..++...+.-+..   .++..+++..+.+....+|   
T Consensus       289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~---~g~~~eA~~~~~kal~l~P---  362 (615)
T TIGR00990       289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL---KGKHLEALADLSKSIELDP---  362 (615)
T ss_pred             ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC---
Confidence            3344445555543   33579999999999999864   4333333333222222   2356666666655433222   


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                                   .....+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..|++++..+
T Consensus       363 -------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~  429 (615)
T TIGR00990       363 -------------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD  429 (615)
T ss_pred             -------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                         1234678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      |++... ++.+|.++...|++++|+..|++++...+ ++.++..++.+|..+|++++|+..|++++...+..........
T Consensus       430 P~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~  508 (615)
T TIGR00990       430 PDFIFS-HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL  508 (615)
T ss_pred             ccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence            999865 48899999999999999999999987655 6788889999999999999999999999986432111111222


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      .++...+.++...|++++|..+|++++..+|+. .++..+..++ ...+.+.|..+..+
T Consensus       509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            222322333344799999999999999999864 4566666665 45667888776544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=7.6e-16  Score=177.05  Aligned_cols=288  Identities=13%  Similarity=0.061  Sum_probs=205.7

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH-----------HHHh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA-----------VAVN   73 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~-----------va~n   73 (467)
                      +..|+..+++.|..+   +     +...++..+|.+|..+|++++|+..|++++..+|++.....           +...
T Consensus       285 ~~~A~~~l~~aL~~~---P-----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        285 GGKAIPELQQAVRAN---P-----KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             HHHHHHHHHHHHHhC---C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence            466777777777643   1     22356788899999999999999999999988886543210           0000


Q ss_pred             hhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch
Q 012265           74 NLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM  153 (467)
Q Consensus        74 nl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~  153 (467)
                      .-......++..++...+.++....|                ....++++.+.+++..|++++|++.|+++++.+|++..
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P----------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDN----------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            00001122445555555554433222                12346778899999999999999999999999998876


Q ss_pred             HHHH------------------------------------------HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          154 PLLL------------------------------------------QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       154 ~~ll------------------------------------------~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                      ++..                                          .+.++...|++++|+..|+++++.+|++... ++
T Consensus       421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~-~~  499 (1157)
T PRK11447        421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL-TY  499 (1157)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HH
Confidence            5432                                          2333456799999999999999999998765 58


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI-----------------------  247 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al-----------------------  247 (467)
                      .+|.+|...|++++|+..|++++...+ ++..+..++.++...++.++|+..|+++.                       
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~  579 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET  579 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence            999999999999999999999987654 66666667777777888888877766421                       


Q ss_pred             --------------HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhH
Q 012265          248 --------------KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDK  311 (467)
Q Consensus       248 --------------~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~k  311 (467)
                                    ..+.. .+.++   .++..+|.++...|++++|+..|+++++.+|+ .+++.+++.++ ...+.+.
T Consensus       580 a~~l~~~G~~~eA~~~l~~-~p~~~---~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        580 ANRLRDSGKEAEAEALLRQ-QPPST---RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHh-CCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence                          11111 12222   23455899999999999999999999999986 67888888877 5567899


Q ss_pred             HHHHHhcCCC
Q 012265          312 AESYEKRLKP  321 (467)
Q Consensus       312 A~~l~~~L~~  321 (467)
                      |..+...++.
T Consensus       656 A~~~l~~ll~  665 (1157)
T PRK11447        656 ARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHHHhc
Confidence            9888877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.74  E-value=1.5e-15  Score=174.57  Aligned_cols=288  Identities=16%  Similarity=0.127  Sum_probs=209.5

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      +..|+..+++.+..+.   +     -..+++.+|.++..+|++++|+..|++++..+|.+..++.-... ++..   .+.
T Consensus       367 ~~eA~~~~~~Al~~~P---~-----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~-l~~~---~~~  434 (1157)
T PRK11447        367 LAQAERLYQQARQVDN---T-----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN-LYRQ---QSP  434 (1157)
T ss_pred             HHHHHHHHHHHHHhCC---C-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHh---cCH
Confidence            4567778888777542   2     22467789999999999999999999999999988766543222 2221   234


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                      .++...+..+....+...   ......+    ....+.+.+.+++..|++++|+..+++++..+|++..+.+..|.++..
T Consensus       435 ~~A~~~l~~l~~~~~~~~---~~~~~~l----~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        435 EKALAFIASLSASQRRSI---DDIERSL----QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHH---HHHHHHh----hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445444443322211100   0000001    112456788899999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----------------------------
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----------------------------  216 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----------------------------  216 (467)
                      .|++++|+..+++++..+|++.... +.++.++...|++++|+.+|+++...                            
T Consensus       508 ~G~~~~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            9999999999999999999987653 66666666677777777766654311                            


Q ss_pred             -------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265          217 -------------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL  283 (467)
Q Consensus       217 -------------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~  283 (467)
                                   ..++.+...++.+|...|++++|+.+|++++...    |+   ...++..+|.++...|++++|..+
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~---~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PG---NADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHCCCHHHHHHH
Confidence                         1245566788999999999999999999999752    22   234567789999999999999999


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhcC
Q 012265          284 FEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRL  319 (467)
Q Consensus       284 le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~L  319 (467)
                      |+.+++..|+ ..+...+..++ ...+.+.|.++...+
T Consensus       660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  697 (1157)
T PRK11447        660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL  697 (1157)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999988875 45555566665 456688888887665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.74  E-value=1.8e-15  Score=168.65  Aligned_cols=291  Identities=13%  Similarity=0.089  Sum_probs=190.1

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      ...|..+++..+.....+        ..++..+|.++...|++++|+..|+.++...|.+...+...+..+...++   .
T Consensus       583 ~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~  651 (899)
T TIGR02917       583 LKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN---Y  651 (899)
T ss_pred             HHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---H
Confidence            456666666666433211        13456666677777777777777777766666665554433333322222   2


Q ss_pred             hHHHHhhhhhhhhhhhHHH--------------------HHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 012265           85 NDSLKKLDRIKEKDMQNFQ--------------------LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL  144 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~--------------------~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l  144 (467)
                      ..+...+.+.....++...                    ..+.+... . +....++...+.++...|++++|...++.+
T Consensus       652 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  729 (899)
T TIGR02917       652 AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-H-PKAALGFELEGDLYLRQKDYPAAIQAYRKA  729 (899)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2222222222111111000                    00000000 0 112234566778888888888898888888


Q ss_pred             cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          145 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       145 ~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      +..+|++ ......+.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+.+|+++++..+ ++.++
T Consensus       730 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  807 (899)
T TIGR02917       730 LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL-RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL  807 (899)
T ss_pred             HhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            8888877 445566777888889999999998888888888765 48888889889999999999988887654 56677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHH
Q 012265          224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SIEALVGLVT  302 (467)
Q Consensus       224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~  302 (467)
                      ..++.+|...|+ .+|+..+++++...    ++++   .++..+|.++...|++++|..+|+++++.+| +..+...++.
T Consensus       808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~  879 (899)
T TIGR02917       808 NNLAWLYLELKD-PRALEYAEKALKLA----PNIP---AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL  879 (899)
T ss_pred             HHHHHHHHhcCc-HHHHHHHHHHHhhC----CCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            788888888888 77888888888652    2222   2345578888889999999999999998886 4566666666


Q ss_pred             Hhc-cCChhHHHHHHhc
Q 012265          303 TSA-HVDVDKAESYEKR  318 (467)
Q Consensus       303 a~~-~~d~~kA~~l~~~  318 (467)
                      ++. ..+.+.|..+.+.
T Consensus       880 ~~~~~g~~~~A~~~~~~  896 (899)
T TIGR02917       880 ALLATGRKAEARKELDK  896 (899)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            663 4557778777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=3.8e-15  Score=151.62  Aligned_cols=261  Identities=13%  Similarity=0.126  Sum_probs=195.3

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH----HHHHHhhhhhccC
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS----FAVAVNNLVALKG   80 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~----~~va~nnl~~l~~   80 (467)
                      .+.|...+++.+..+.   +     ...++..+|.++..+|++++|..+++.++...+.+...    +..++..+..   
T Consensus        51 ~~~A~~~~~~al~~~p---~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~---  119 (389)
T PRK11788         51 PDKAIDLFIEMLKVDP---E-----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK---  119 (389)
T ss_pred             hHHHHHHHHHHHhcCc---c-----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH---
Confidence            5678888888887542   1     23567889999999999999999999999863322211    1112222222   


Q ss_pred             CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HH
Q 012265           81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PL  155 (467)
Q Consensus        81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~  155 (467)
                      .++...+...+.+.....                +.....+.+.+.++...|++++|.+.++.+++.+|.+..     .+
T Consensus       120 ~g~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  183 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEG----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY  183 (389)
T ss_pred             CCCHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            234555655554432211                112346678899999999999999999999988887643     23


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC--hhHHHHHHHHHHHc
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM--PATVATLVALKERA  233 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~  233 (467)
                      ...+.++...|++++|+..++++++..|++... ++.++.+|...|++++|+..|+++.+..+.  +.++..++.+|...
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQCVRA-SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            356677889999999999999999999998765 488999999999999999999999875442  34567889999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV  301 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv  301 (467)
                      |++++|+..+++++...    ++ ..  . +..+|.++...|++++|..+|+++++.+|+...+..+.
T Consensus       263 g~~~~A~~~l~~~~~~~----p~-~~--~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        263 GDEAEGLEFLRRALEEY----PG-AD--L-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             CCHHHHHHHHHHHHHhC----CC-ch--H-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            99999999999988752    22 21  2 24479999999999999999999999999865544333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.72  E-value=4e-15  Score=165.82  Aligned_cols=169  Identities=18%  Similarity=0.182  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ....+++..+..++..|++++|...++.++..+|++..+++..|.++...|++++|+..+++++..+|++.... +.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~  201 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL-LLKGD  201 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH-HHHHH
Confidence            34455666777777777777777777777777777777777777777777777777777777777777766543 66777


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH  274 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~  274 (467)
                      ++...|++++|+..|+++++..+ ++.++..++.++...|++++|...++.++...+    .+..   .+...|.++...
T Consensus       202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~  274 (899)
T TIGR02917       202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP----NSPL---AHYLKALVDFQK  274 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCch---HHHHHHHHHHHh
Confidence            77777777777777777776554 455566667777777777777777766654321    1111   111234444455


Q ss_pred             CChhHHHHHHHHHHHhcC
Q 012265          275 GREEDASHLFEELVKTHG  292 (467)
Q Consensus       275 g~~~~A~~~le~ll~~~p  292 (467)
                      |++++|...|++++..+|
T Consensus       275 ~~~~~A~~~~~~~l~~~~  292 (899)
T TIGR02917       275 KNYEDARETLQDALKSAP  292 (899)
T ss_pred             cCHHHHHHHHHHHHHhCC
Confidence            555555555555554444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=7.8e-15  Score=144.58  Aligned_cols=236  Identities=17%  Similarity=0.214  Sum_probs=185.8

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      -++..+...|..++..|+.-+|.+.++.+++.+|.+..++.-.+.-++   +..+....++.|......+          
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~---d~~~~~~~~~~F~~A~~ld----------  390 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA---DENQSEKMWKDFNKAEDLD----------  390 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh---hhhccHHHHHHHHHHHhcC----------
Confidence            356667778899999999999999999999999988876443322222   2233444444443332221          


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                            ++...+++.++.+++-.+++++|..-|++.+.++|++..+++-++.++++++++.++...++++..++|+.++.
T Consensus       391 ------p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev  464 (606)
T KOG0547|consen  391 ------PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV  464 (606)
T ss_pred             ------CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence                  23446899999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVAL-KERAGDIDGAAAVLDSAIKWWLNAMTEDNKL  260 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~  260 (467)
                       ....|+++..+++|+.|+..|..++++.+       ++..+..-+.+ +.=.+++..|+.++++|++.       |+..
T Consensus       465 -y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~-------Dpkc  536 (606)
T KOG0547|consen  465 -YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL-------DPKC  536 (606)
T ss_pred             -HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc-------CchH
Confidence             47789999999999999999999987654       22222222222 22358999999999999985       3444


Q ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          261 SVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..+...+|.+.+++|+.++|+++|++....-
T Consensus       537 e~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  537 EQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5567778999999999999999999998765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.66  E-value=1.6e-14  Score=160.67  Aligned_cols=233  Identities=15%  Similarity=0.033  Sum_probs=183.1

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..++..+|.++.. |+.++|+..|.+++...|++...+.++ ..+...   ++..++...+.++....+           
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA-~al~~~---Gr~eeAi~~~rka~~~~p-----------  540 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVA-YQAYQV---EDYATALAAWQKISLHDM-----------  540 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHH-HHHHHC---CCHHHHHHHHHHHhccCC-----------
Confidence            3567889999987 899999999999999999765322211 111122   344445444443211100           


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                           + ....++.+.+++..|++++|...+..++..+|++.......+..+...|++++|+..|++++..+|+ .. ++
T Consensus       541 -----~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~-a~  612 (987)
T PRK09782        541 -----S-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN-AY  612 (987)
T ss_pred             -----C-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH-HH
Confidence                 1 1235688999999999999999999999999988665544444455679999999999999999996 55 45


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      +.+|.++.+.|++++|+..|++++.+.+ ++.++..++.++...|++++|+..|++++...    |   ....++..+|.
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P---~~~~a~~nLA~  685 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----P---DDPALIRQLAY  685 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C---CCHHHHHHHHH
Confidence            8999999999999999999999998876 77888999999999999999999999999863    2   22346777999


Q ss_pred             HHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          270 FKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ++...|++++|...|+++++..|+.
T Consensus       686 al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        686 VNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999863

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=1.3e-13  Score=152.05  Aligned_cols=276  Identities=13%  Similarity=0.022  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhh---------hh-----
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEK---------DM-----   99 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~---------~~-----   99 (467)
                      +..+|+++..+|++++|+..|++++...|++..+....+..+...+   ....++..+.++...         .+     
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~---~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~  195 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR---LSAPALGAIDDANLTPAEKRDLEADAAAELV  195 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            6778999999999999999999999999988877654333222111   112222222111000         00     


Q ss_pred             -----------hHH---H-HH---HHhhc---CCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HH
Q 012265          100 -----------QNF---Q-LA---RVLDL---RLS--PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PL  155 (467)
Q Consensus       100 -----------~~~---~-~~---~~l~~---kL~--~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~  155 (467)
                                 ...   . ..   +.+..   +..  .+......+....+++..|++++|+..|+.+++..|..+. +.
T Consensus       196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~  275 (765)
T PRK10049        196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ  275 (765)
T ss_pred             HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH
Confidence                       000   0 00   01100   000  0011112222233456789999999999999988754332 33


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------------C
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKS---KIILLARAQVAAAANHPFIAAESLAKIPDIQH-------------M  219 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~---~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------------~  219 (467)
                      ...+.+++..|++++|+..|++++...|.+.   ......|+.+++.+|++++|+..|+++.+..+             +
T Consensus       276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~  355 (765)
T PRK10049        276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN  355 (765)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence            4458889999999999999999998887651   12235677788999999999999999876432             1


Q ss_pred             ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HH
Q 012265          220 ---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IE  295 (467)
Q Consensus       220 ---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~  295 (467)
                         ..+...++.++...|++++|+.+|++++...    |++   ..++..+|.++...|++++|+..|++++..+|+ ..
T Consensus       356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~  428 (765)
T PRK10049        356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA----PGN---QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN  428 (765)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence               2345678999999999999999999998753    222   346777899999999999999999999999987 45


Q ss_pred             HHHHHHHHh-ccCChhHHHHHHhcC
Q 012265          296 ALVGLVTTS-AHVDVDKAESYEKRL  319 (467)
Q Consensus       296 ala~Lv~a~-~~~d~~kA~~l~~~L  319 (467)
                      +...++.++ ...+.+.|+.++..+
T Consensus       429 l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        429 LEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            555555544 455678888777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.62  E-value=2.3e-13  Score=150.22  Aligned_cols=156  Identities=12%  Similarity=-0.043  Sum_probs=112.3

Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-C----hhHHHHHHHHHHHcCCH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M----PATVATLVALKERAGDI  236 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~----p~~~~~l~~ly~~~g~~  236 (467)
                      ++..|++++|+..|+++++..|..+..+...++.+|+.+|++++|+.+|++++...+ .    ......|+.++..+|++
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            356688888888888888876443333335578899999999999999998876543 1    23455677778889999


Q ss_pred             HHHHHHHHHHHHHHHH---------hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-c
Q 012265          237 DGAAAVLDSAIKWWLN---------AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-A  305 (467)
Q Consensus       237 ~~A~~~l~~al~~~~~---------~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~  305 (467)
                      ++|+.+|+.+....+.         ..|+ +....++..+|.++...|++++|+.+|++++...|+ ..++..+...+ .
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999888754210         0011 122223445799999999999999999999999986 56666777766 4


Q ss_pred             cCChhHHHHHHhc
Q 012265          306 HVDVDKAESYEKR  318 (467)
Q Consensus       306 ~~d~~kA~~l~~~  318 (467)
                      ..+++.|+..++.
T Consensus       406 ~g~~~~A~~~l~~  418 (765)
T PRK10049        406 RGWPRAAENELKK  418 (765)
T ss_pred             cCCHHHHHHHHHH
Confidence            5668889888764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.61  E-value=2.8e-13  Score=132.90  Aligned_cols=170  Identities=16%  Similarity=0.106  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      .++++.+.++...|++++|...+++++..+|++..+++..|.++...|++++|+..+++++..+|++...  .....++.
T Consensus        99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~--~~~~~l~~  176 (296)
T PRK11189         99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR--ALWLYLAE  176 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999999999998632  23334556


Q ss_pred             HcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265          199 AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE  278 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~  278 (467)
                      ..+++++|+..|.+..... .+..+. .+.++...|+...+ ..+..+.........-.+.....+..+|.++...|+++
T Consensus       177 ~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~  253 (296)
T PRK11189        177 SKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD  253 (296)
T ss_pred             ccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            6789999999997765322 222222 23444456666544 24444432211111011233456778999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 012265          279 DASHLFEELVKTHGS  293 (467)
Q Consensus       279 ~A~~~le~ll~~~pd  293 (467)
                      +|+..|+++++.+|.
T Consensus       254 ~A~~~~~~Al~~~~~  268 (296)
T PRK11189        254 EAAALFKLALANNVY  268 (296)
T ss_pred             HHHHHHHHHHHhCCc
Confidence            999999999999964

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=1.4e-13  Score=146.52  Aligned_cols=179  Identities=15%  Similarity=0.040  Sum_probs=118.4

Q ss_pred             CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHh
Q 012265          132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA  211 (467)
Q Consensus       132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~  211 (467)
                      +++++|...++++++.+|++..++...|.++...|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-KYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            346778888888888888888777777777777888888888888888888887764 4777888888888888888888


Q ss_pred             ccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          212 KIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       212 ~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      +++.+++ ++.....++.++...|++++|+.++++++...   +++.   ...+..+|.++...|++++|...|+++...
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH---LQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc---cccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            8877665 33333344445556777888888777766431   1111   123444677777788888888888777766


Q ss_pred             cCCHHH-HHHHHHHhccCChhHHHHHHhc
Q 012265          291 HGSIEA-LVGLVTTSAHVDVDKAESYEKR  318 (467)
Q Consensus       291 ~pd~~a-la~Lv~a~~~~d~~kA~~l~~~  318 (467)
                      .|+... ...+...|...+ ++|...+..
T Consensus       471 ~~~~~~~~~~l~~~~~~~g-~~a~~~l~~  498 (553)
T PRK12370        471 EITGLIAVNLLYAEYCQNS-ERALPTIRE  498 (553)
T ss_pred             cchhHHHHHHHHHHHhccH-HHHHHHHHH
Confidence            665333 333333333333 355554433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=8.8e-15  Score=142.49  Aligned_cols=255  Identities=21%  Similarity=0.207  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .+++|.++...|++++|.+++...+..  .|+|..++...+.-...+++...+..+++++......              
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--------------   76 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            356799999999999999999655444  3667666554333333344455566666655432111              


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKII  189 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~~~~  189 (467)
                           ......+.+.+ +..+++++|.+.++.....+++ ...+...+.++...++++++..++..+....  |++... 
T Consensus        77 -----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  148 (280)
T PF13429_consen   77 -----NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARF-  148 (280)
T ss_dssp             ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHH-
T ss_pred             -----ccccccccccc-cccccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHH-
Confidence                 11122333444 6788888888888877665543 3333444556778888999888888876543  455544 


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA  268 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la  268 (467)
                      .+.+|.++.+.|++++|+.+|+++++..+ ++.+...++.++...|+.+++..++.......    +.++.   ++..+|
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~~~~---~~~~la  221 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----PDDPD---LWDALA  221 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCC---HCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----cCHHH---HHHHHH
Confidence            47888999999999999999999988766 67788888888888888888777777655432    22333   344568


Q ss_pred             HHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCC-hhHHHHHHh
Q 012265          269 SFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAHVD-VDKAESYEK  317 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d-~~kA~~l~~  317 (467)
                      .+++..|++++|+.+|+++++.+| |...+..+.-++...+ .+.|..+..
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred             HHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888889999999999999998887 4666777777765444 577766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=7e-15  Score=143.20  Aligned_cols=229  Identities=22%  Similarity=0.227  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..|..+|.+...+|++++|...|++++..++.++..+.    +++.+....++..+++.+.......             
T Consensus        45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~----~l~~l~~~~~~~~A~~~~~~~~~~~-------------  107 (280)
T PF13429_consen   45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE----RLIQLLQDGDPEEALKLAEKAYERD-------------  107 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc-------------
Confidence            55778899999999999999999999998876555432    2222223345555555554321111             


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC--CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF--PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~--P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                          .........+.++...++++++...++.+....  |++...++..|.++.+.|++++|+..|+++++.+|++... 
T Consensus       108 ----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~-  182 (280)
T PF13429_consen  108 ----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA-  182 (280)
T ss_dssp             --------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH-
T ss_pred             ----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-
Confidence                011122334556778899999999999876533  5677778889999999999999999999999999999875 


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA  268 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la  268 (467)
                      ...++.+++..|+++++..++..+... ..+|.++..++.+|...|++++|+.+|++++...    ++++   ..+..+|
T Consensus       183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~---~~~~~~a  255 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDP---LWLLAYA  255 (280)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-H---HHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc----cccc---ccccccc
Confidence            488999999999999988888888654 3478888899999999999999999999988642    2233   2455689


Q ss_pred             HHHHHCCChhHHHHHHHHHHH
Q 012265          269 SFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~  289 (467)
                      .++...|+.++|..++++++.
T Consensus       256 ~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  256 DALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHT-----------------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.58  E-value=5.9e-13  Score=123.85  Aligned_cols=192  Identities=19%  Similarity=0.151  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..++++.+..++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ...++.+|
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV-LNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHH
Confidence            45678899999999999999999999999999999988899999999999999999999999999998765 48899999


Q ss_pred             HHcCChHHHHHHHhccccCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265          198 AAANHPFIAAESLAKIPDIQ---HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH  274 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~---~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~  274 (467)
                      ...|++++|+..|+++++..   ..+..+..++.+|...|++++|...|.+++...+    .+   ...+..+|.++...
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~---~~~~~~la~~~~~~  182 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QR---PESLLELAELYYLR  182 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CC---hHHHHHHHHHHHHc
Confidence            99999999999999998643   2345677789999999999999999999987532    11   22455689999999


Q ss_pred             CChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHh
Q 012265          275 GREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEK  317 (467)
Q Consensus       275 g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~  317 (467)
                      |++++|..+|++++...|+ ...+..++..+ ...+.+.|..+..
T Consensus       183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999998654 34444333333 4556677766644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.57  E-value=3.7e-13  Score=149.89  Aligned_cols=233  Identities=13%  Similarity=0.052  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ..+.+|+++...|++++|+..|++++...|.+... +..+..+..   .++...+...+.++....+             
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~-~~la~all~---~Gd~~eA~~~l~qAL~l~P-------------  573 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDL-LAAANTAQA---AGNGAARDRWLQQAEQRGL-------------  573 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHH-HHHHHHHHH---CCCHHHHHHHHHHHHhcCC-------------
Confidence            36678999999999999999999998876655443 322222222   3455555555544322111             


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                         ....+..+.+......|++++|...+++++..+|+ ..++...|.++.+.|++++|+..|++++..+|++... +..
T Consensus       574 ---~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a-~~n  648 (987)
T PRK09782        574 ---GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY-QAA  648 (987)
T ss_pred             ---ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHH
Confidence               11223344444555669999999999999999996 7778888999999999999999999999999999875 599


Q ss_pred             HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      ++.++...|++++|+.+|+++++..+ ++.++..++.+|..+|++++|+..|++++...       +....+....|.++
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-------P~~a~i~~~~g~~~  721 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-------DNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCchhhhhhhHHH
Confidence            99999999999999999999998776 78889999999999999999999999999752       22223445579999


Q ss_pred             HHCCChhHHHHHHHHHHHhcCCH
Q 012265          272 LRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       272 l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ....+++.|.+.|.+....+++.
T Consensus       722 ~~~~~~~~a~~~~~r~~~~~~~~  744 (987)
T PRK09782        722 QQRFNFRRLHEEVGRRWTFSFDS  744 (987)
T ss_pred             HHHHHHHHHHHHHHHHhhcCccc
Confidence            99999999999999999888763

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=5.1e-13  Score=142.29  Aligned_cols=248  Identities=8%  Similarity=-0.039  Sum_probs=164.5

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHh---------CChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL---------GNTQEAFGAYTDIIKRNLADESSFAVAVNNL   75 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~---------G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl   75 (467)
                      +..|..++++.+..+.        +....+..+|.+|...         |++++|...+++++..+|++..++...+.-+
T Consensus       277 ~~~A~~~~~~Al~ldP--------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~  348 (553)
T PRK12370        277 LQQALKLLTQCVNMSP--------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN  348 (553)
T ss_pred             HHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4577788888886542        2345667777776644         4489999999999999999888776554333


Q ss_pred             hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH
Q 012265           76 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL  155 (467)
Q Consensus        76 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~  155 (467)
                      ...   ++..++...+.++...+|+                ...++++.+.+++..|++++|+..+++++..+|.+....
T Consensus       349 ~~~---g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        349 TIH---SEYIVGSLLFKQANLLSPI----------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             HHc---cCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence            222   2445555555544333332                223567778888888888888888888888888877665


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      ...+.+++..|++++|+..+++++... |++... +..+|.+|..+|++++|...+.++....+ ....+..++.+|...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~-~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPIL-LSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            555555666788888888888888775 555543 47778888888888888888888765433 344456677777777


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      |  +.|...++..+.-..... .+.      ...+.++.-+|+.+.|..+ +++.+.
T Consensus       489 g--~~a~~~l~~ll~~~~~~~-~~~------~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        489 S--ERALPTIREFLESEQRID-NNP------GLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhh-cCc------hHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            7  367777776555432211 111      1146666677777777666 665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.57  E-value=1.5e-12  Score=121.17  Aligned_cols=202  Identities=18%  Similarity=0.132  Sum_probs=156.2

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      ....+++++|.++..+|++++|...|++++...|.+..                                          
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------------------------------   66 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL------------------------------------------   66 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------------------------------
Confidence            35677899999999999999999999999876554321                                          


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKS  186 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~  186 (467)
                                 .+.+.+.++...|++++|.+.+++++..+|.+..+....+.++...|++++|+..+++++...  |...
T Consensus        67 -----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  135 (234)
T TIGR02521        67 -----------AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA  135 (234)
T ss_pred             -----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccch
Confidence                       223457777788888999999998888888888887888888888999999999999888743  3333


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      .. ...++.+|...|++++|...|.+++...+ .+..+..++.++...|++++|...+++++...    +.+.  . .+.
T Consensus       136 ~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~--~-~~~  207 (234)
T TIGR02521       136 RS-LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY----NQTA--E-SLW  207 (234)
T ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCH--H-HHH
Confidence            33 36788899999999999999998887654 56677788889999999999999999887652    1111  1 233


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .++.++...|+.++|..+++.+....
T Consensus       208 ~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       208 LGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            35778888899999988888776553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.7e-13  Score=139.98  Aligned_cols=244  Identities=14%  Similarity=0.043  Sum_probs=187.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCC---chHHHHHHHhhhhhccCCCChhHHHHhhhh-hhhhhhhHHHHHHH
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA---DESSFAVAVNNLVALKGPKDVNDSLKKLDR-IKEKDMQNFQLARV  107 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~---d~~~~~va~nnl~~l~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~  107 (467)
                      -+..|+|..|+.++++++|..+|+.+=...|-   +..++-   .-++-+.+.  +  .+-.|-+ +.+.          
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS---T~LWHLq~~--v--~Ls~Laq~Li~~----------  416 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS---TTLWHLQDE--V--ALSYLAQDLIDT----------  416 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH---HHHHHHHhh--H--HHHHHHHHHHhh----------
Confidence            66789999999999999999999999888873   333332   222222211  1  0111100 1111          


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                        .+..+    ..+.-.+.++-.+++.+.|++.|++++..+|+...++-+.+.-++....++.|.+.|+.++..+|.+-.
T Consensus       417 --~~~sP----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  417 --DPNSP----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             --CCCCc----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence              22222    345556777888899999999999999999999999889998889999999999999999999999987


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE  266 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~  266 (467)
                      ++ +-||.+|+++++++.|.-.|++++++.+ +..+...++.+|.+.|+.++|+.+|++|+...+    .++.   ..+.
T Consensus       491 Aw-YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~----kn~l---~~~~  562 (638)
T KOG1126|consen  491 AW-YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP----KNPL---CKYH  562 (638)
T ss_pred             HH-HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC----CCch---hHHH
Confidence            65 9999999999999999999999999887 556677899999999999999999999997532    1221   2444


Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHhcc
Q 012265          267 AASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTSAH  306 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~~~  306 (467)
                      .|.++...+++++|...||++-+.-|+. .+.+.++..|-.
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~  603 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR  603 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            6999999999999999999999999874 445555555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.8e-12  Score=127.47  Aligned_cols=262  Identities=14%  Similarity=0.075  Sum_probs=193.9

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      .-|..|.|-++..+.++|+|+..|+.+.+.+|-+..-.-+.+|-|+..++-...    -.+-..+          -.+ +
T Consensus       262 ~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v----------~~i-d  326 (559)
T KOG1155|consen  262 MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNV----------SNI-D  326 (559)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHH----------HHh-c
Confidence            356788899999999999999999999999885554444444444333221111    1110000          000 1


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      |.   .+.+ ..-.+.-|-..++-+.|...|+.+++++|....++.+.+.-++..++...|+..|+.+++.+|.|-.++ 
T Consensus       327 Ky---R~ET-CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW-  401 (559)
T KOG1155|consen  327 KY---RPET-CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW-  401 (559)
T ss_pred             cC---Cccc-eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH-
Confidence            11   1111 112233444456789999999999999999999999999999999999999999999999999998876 


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      +-|||.|...+-..=|+-.|+++....+ ++.+|..||.+|.+.++.++|+.+|..|+..-      +.. ..++..+|.
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dte-~~~l~~Lak  474 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DTE-GSALVRLAK  474 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------ccc-hHHHHHHHH
Confidence            9999999999999999999999999876 78899999999999999999999999998752      111 234666899


Q ss_pred             HHHHCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHh---ccCChhHHHHHHhcC
Q 012265          270 FKLRHGREEDASHLFEELVKTH------GSIEALVGLVTTS---AHVDVDKAESYEKRL  319 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~~------pd~~ala~Lv~a~---~~~d~~kA~~l~~~L  319 (467)
                      +|.+.++.++|...|++-++..      .+.-.-+.+.++.   -..|.++|..|+...
T Consensus       475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            9999999999999999999844      1211223333332   567788888876543

>TIGR00540 hemY_coli hemY protein

Probab=99.53  E-value=4.4e-12  Score=130.21  Aligned_cols=261  Identities=15%  Similarity=0.111  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      -.+..|.+....|+++.|...+.+..+..|+....+++++.-...   .++...+...+.+.....++            
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~---~g~~~~A~~~l~~a~~~~p~------------  150 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ---RGDEARANQHLEEAAELAGN------------  150 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCc------------
Confidence            346678888899999999999998888777544444443332221   23455555555443221111            


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC----------
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL----------  182 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~----------  182 (467)
                         ....+....+.+++..|++++|...++.+.+.+|++..+..+.+.+++..|++++|++.+..+.+..          
T Consensus       151 ---~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l  227 (409)
T TIGR00540       151 ---DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL  227 (409)
T ss_pred             ---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence               0112344558888889999999999999998899988888888888888888888877766665442          


Q ss_pred             ----------------------------C----CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChh-H--HHHHH
Q 012265          183 ----------------------------P----DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA-T--VATLV  227 (467)
Q Consensus       183 ----------------------------P----~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~--~~~l~  227 (467)
                                                  |    ++.. +.+.+|.++...|++++|...+++.++..++.. .  .....
T Consensus       228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~-l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~  306 (409)
T TIGR00540       228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIA-LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLP  306 (409)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHH
Confidence                                        3    1222 235555556666666666666666554333111 0  01111


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH--HHHHhcCCHHHHHHHHHHh-
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE--ELVKTHGSIEALVGLVTTS-  304 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le--~ll~~~pd~~ala~Lv~a~-  304 (467)
                      ..+...++.+.++..+++++..    .|+++. ..++..+|.++++.|++++|.++|+  .+++.+|+......|...+ 
T Consensus       307 ~~~l~~~~~~~~~~~~e~~lk~----~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~  381 (409)
T TIGR00540       307 IPRLKPEDNEKLEKLIEKQAKN----VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD  381 (409)
T ss_pred             hhhcCCCChHHHHHHHHHHHHh----CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence            2222234445555555444432    223331 1234456777777777777777777  4666667665555555544 


Q ss_pred             ccCChhHHHHHHh
Q 012265          305 AHVDVDKAESYEK  317 (467)
Q Consensus       305 ~~~d~~kA~~l~~  317 (467)
                      ...+.+.|..+.+
T Consensus       382 ~~g~~~~A~~~~~  394 (409)
T TIGR00540       382 QAGDKAEAAAMRQ  394 (409)
T ss_pred             HcCCHHHHHHHHH
Confidence            3455666655543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.52  E-value=2e-12  Score=117.08  Aligned_cols=195  Identities=17%  Similarity=0.161  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..+...+++-||..|++..|...++++++.+|++..+++..|.+|...|+.+.|.+.|++++..+|++.+++ ...+-.+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NNYG~FL  113 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hhhhHHH
Confidence            346778899999999999999999999999999999999999999999999999999999999999998764 8899999


Q ss_pred             HHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265          198 AAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH  274 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~  274 (467)
                      +.+|++++|...|++++....   .++.+..++.+.+++|+.+.|...|++++.+.++.+       ..+.+++..+...
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~-------~~~l~~a~~~~~~  186 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP-------PALLELARLHYKA  186 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC-------hHHHHHHHHHHhc
Confidence            999999999999999986442   456788899999999999999999999998753322       2355679999999


Q ss_pred             CChhHHHHHHHHHHHhcC-CH-HHHHHHHHHhccCChhHHHHHHhcCC
Q 012265          275 GREEDASHLFEELVKTHG-SI-EALVGLVTTSAHVDVDKAESYEKRLK  320 (467)
Q Consensus       275 g~~~~A~~~le~ll~~~p-d~-~ala~Lv~a~~~~d~~kA~~l~~~L~  320 (467)
                      |++-.|.-.|+......+ .. ..+.+.-.+-...|.+.+..|..+|.
T Consensus       187 ~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         187 GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999887764 33 33444444556777777777765543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=3.1e-12  Score=125.15  Aligned_cols=290  Identities=20%  Similarity=0.159  Sum_probs=166.2

Q ss_pred             HHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhcc---CCCChhH
Q 012265           10 RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK---GPKDVND   86 (467)
Q Consensus        10 ~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~---~~~~~~~   86 (467)
                      .||.|+|....+.+=.|+-|     +..|.-|.++|+++.|+++++-.-+.   |..+...++||+.++.   +..+..+
T Consensus       403 dwcle~lk~s~~~~la~dle-----i~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~  474 (840)
T KOG2003|consen  403 DWCLESLKASQHAELAIDLE-----INKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFAD  474 (840)
T ss_pred             HHHHHHHHHhhhhhhhhhhh-----hhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhH
Confidence            57888887554444333333     34688899999999999998644332   3344444667876542   3345555


Q ss_pred             HHHhhhhhhhhhh-----------------hHHHHH----HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 012265           87 SLKKLDRIKEKDM-----------------QNFQLA----RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALP  145 (467)
Q Consensus        87 a~~~l~~~~~~~~-----------------~~~~~~----~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~  145 (467)
                      +..+.......+.                 .....+    +.|..   ...-....||.++.+-..|++++|..+|-++.
T Consensus       475 aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh  551 (840)
T KOG2003|consen  475 AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLH  551 (840)
T ss_pred             HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence            5554433211100                 000000    11100   00112345666666666666666666666655


Q ss_pred             ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-CCCChhHHH
Q 012265          146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-IQHMPATVA  224 (467)
Q Consensus       146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~~~~p~~~~  224 (467)
                      ..--++...++-.|.+|....+..+|+++|-++...-|+++..+ --|+.+|-+.|+-.+|.+++-.-.. ...+..++-
T Consensus       552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il-skl~dlydqegdksqafq~~ydsyryfp~nie~ie  630 (840)
T KOG2003|consen  552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL-SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE  630 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH-HHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence            55455555555556666666666666666666666666665443 5666666666666666665432221 111445555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT  303 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a  303 (467)
                      .|+..|+...=.++|+.+|++|.-.    .|  ....+.+. ++.++.+.|+|+.|.++|..+...+|. .+-+--||..
T Consensus       631 wl~ayyidtqf~ekai~y~ekaali----qp--~~~kwqlm-iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALI----QP--NQSKWQLM-IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhc----Cc--cHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            6666666666666666666665432    11  22333333 578888888888888888888888874 4555556655


Q ss_pred             hccCChhHHHHHHhc
Q 012265          304 SAHVDVDKAESYEKR  318 (467)
Q Consensus       304 ~~~~d~~kA~~l~~~  318 (467)
                      ...+.+..+.+|...
T Consensus       704 ~~dlgl~d~key~~k  718 (840)
T KOG2003|consen  704 AGDLGLKDAKEYADK  718 (840)
T ss_pred             hccccchhHHHHHHH
Confidence            555666666666544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.52  E-value=5.3e-12  Score=129.12  Aligned_cols=256  Identities=16%  Similarity=0.128  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      .+..|.+....|+++.|...+...-.. .+++.+.++...-. + ...++...+...+.++.+..++             
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~a-A-~~~g~~~~A~~~l~~A~~~~~~-------------  150 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLAAEA-A-QQRGDEARANQHLERAAELADN-------------  150 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHHHHH-H-HHCCCHHHHHHHHHHHHhcCCc-------------
Confidence            355677777889999998777765443 22344444322211 1 1234555555555544322111             


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH-------------
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE-------------  180 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~-------------  180 (467)
                        .......-.+.+++..|++++|...++.+.+.+|++..+..+.+.+|...|++++|+.+|..+.+             
T Consensus       151 --~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~  228 (398)
T PRK10747        151 --DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE  228 (398)
T ss_pred             --chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence              01112233478889999999999999999999999998888888889999999998865555442             


Q ss_pred             -----------------------------hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHH
Q 012265          181 -----------------------------KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE  231 (467)
Q Consensus       181 -----------------------------~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~  231 (467)
                                                   ..|+++.. ++.+|..+...|+.++|...+++.+....++.++...+.+  
T Consensus       229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~-~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--  305 (398)
T PRK10747        229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL-QVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--  305 (398)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--
Confidence                                         23445443 4788999999999999999999998755566554443333  


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CChh
Q 012265          232 RAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAH-VDVD  310 (467)
Q Consensus       232 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-~d~~  310 (467)
                      ..++.++++..+++.+..    .|+++.   ++..+|.+++..|++++|...|+++++..|+......|..++.. .+.+
T Consensus       306 ~~~~~~~al~~~e~~lk~----~P~~~~---l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~  378 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQ----HGDTPL---LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE  378 (398)
T ss_pred             cCCChHHHHHHHHHHHhh----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence            448888888888876653    233333   35557999999999999999999999999998776777777754 4577


Q ss_pred             HHHHHHh
Q 012265          311 KAESYEK  317 (467)
Q Consensus       311 kA~~l~~  317 (467)
                      .|..+.+
T Consensus       379 ~A~~~~~  385 (398)
T PRK10747        379 EAAAMRR  385 (398)
T ss_pred             HHHHHHH
Confidence            7766654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.1e-12  Score=134.20  Aligned_cols=255  Identities=15%  Similarity=0.059  Sum_probs=177.6

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      ++++|++++.+.--.+.+-=++.|     |.-  ..+++.+..++- --+-+.++..+|..+.++..+ .|.+++++  +
T Consensus       368 ~Y~~a~~~F~~~r~~~p~rv~~me-----iyS--T~LWHLq~~v~L-s~Laq~Li~~~~~sPesWca~-GNcfSLQk--d  436 (638)
T KOG1126|consen  368 EYDQAERIFSLVRRIEPYRVKGME-----IYS--TTLWHLQDEVAL-SYLAQDLIDTDPNSPESWCAL-GNCFSLQK--D  436 (638)
T ss_pred             HHHHHHHHHHHHHhhccccccchh-----HHH--HHHHHHHhhHHH-HHHHHHHHhhCCCCcHHHHHh-cchhhhhh--H
Confidence            577888888766555443222221     111  112333333321 223455666677777777644 45556643  3


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV  163 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~  163 (467)
                      ...|++-|.+.+..+++..                -.+--.+.=+..+..+|.|...|..++..+|.+..+++-.+.+|.
T Consensus       437 h~~Aik~f~RAiQldp~fa----------------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  437 HDTAIKCFKRAIQLDPRFA----------------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             HHHHHHHHHHhhccCCccc----------------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            4455555555433322100                011112333445567899999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      ++++++.|+-.|+++++.+|.+...+ -.++.++.+.|+.++|+.+|++++.+++ +|.-....+.++...+++++|+.+
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~-~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~  579 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVIL-CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE  579 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHH-hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence            99999999999999999999987755 7889999999999999999999988876 777777888999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      |++..+.-   + + +  ...+..+|.+|-+.|+.+.|+..|--+...+|.
T Consensus       580 LEeLk~~v---P-~-e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  580 LEELKELV---P-Q-E--SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHhC---c-c-h--HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            99877652   1 1 1  224555799999999999999999988888874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.46  E-value=3.4e-12  Score=120.82  Aligned_cols=173  Identities=12%  Similarity=0.040  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--HHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--ILL  191 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~--~~l  191 (467)
                      ....+++.+..++..|++++|...+++++..+|++.   .+++..|.++...|++++|+..++++++.+|++...  ..+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            345788999999999999999999999999999876   466888999999999999999999999999987642  347


Q ss_pred             HHHHHHHHc--------CChHHHHHHHhccccCCC-ChhH---H--------------HHHHHHHHHcCCHHHHHHHHHH
Q 012265          192 ARAQVAAAA--------NHPFIAAESLAKIPDIQH-MPAT---V--------------ATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       192 ~Laql~~~~--------g~~~~A~~~L~~~~~~~~-~p~~---~--------------~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                      .++.++...        |++++|+..|++++...+ ++..   +              ..++.+|...|++.+|+..++.
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            788888876        889999999999986544 2211   1              2457778888999999999998


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          246 AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       246 al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ++..+++    .+....++..+|.++...|++++|..+|+.+...+|+
T Consensus       192 al~~~p~----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       192 VVENYPD----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHCCC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            8876532    2334455667889999999999999988888776653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.45  E-value=1.5e-11  Score=126.69  Aligned_cols=253  Identities=15%  Similarity=0.095  Sum_probs=177.7

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccC----CCchHHHHHHHhhhh-hccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN----LADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQL  104 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~----p~d~~~~~va~nnl~-~l~~~~~~~~a~~~l~~~~~~~~~~~~~  104 (467)
                      ..-+..-+|.+|..+|+++.|+.+++.++..-    --+...+....+++. ......++.+|...+.++..-       
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------  270 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------  270 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence            33444458999999999999999999999871    011122222222221 011122334444333332110       


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-------CCCc-hHHHHHHHHHHhcCChhHHHHHHH
Q 012265          105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-------PDSV-MPLLLQAAVLVRENKAGKAEELLG  176 (467)
Q Consensus       105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-------P~~~-~~~ll~a~l~~~~~~~~~A~~~l~  176 (467)
                      .+.. .=-+.+.-.+++.|.+.+|+..|++++|...++.++...       +..+ ..+...+.++...+++++|+.+|+
T Consensus       271 ~e~~-~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  271 REEV-FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             HHHh-cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            0000 001234566788999999999999999999888766332       2222 234466778889999999999999


Q ss_pred             HHHHhC-----CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHH
Q 012265          177 QFAEKL-----PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAA  240 (467)
Q Consensus       177 ~~l~~~-----P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~  240 (467)
                      +.++..     +++  ..-++-.||.+|..+|+|++|...|++++...      .+++   .+..++..|.+.+++.+|.
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            888754     222  12245689999999999999999999998421      1222   3668999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      .+|..+..|.+...++.+.+...+..+|.+|-.+|++++|.++.+.++..
T Consensus       430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            99999999986666666777788999999999999999999999999854

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.45  E-value=4.7e-11  Score=122.15  Aligned_cols=229  Identities=12%  Similarity=0.068  Sum_probs=159.7

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      +..+.++..+|++++|...++.+.+..|+++.+..+...-++..+   +...+...+..+...            ..+++
T Consensus       157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g---dw~~a~~~l~~l~k~------------~~~~~  221 (398)
T PRK10747        157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG---AWSSLLDILPSMAKA------------HVGDE  221 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHc------------CCCCH
Confidence            344788888888888888888888888888877765554444443   333333333222111            01111


Q ss_pred             HHHHHH----HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          115 KQREAI----YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       115 ~q~~~l----~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      .+...+    +.............+...+..+.+....|+++.+.+..|..+...|+.++|.+.+++.++..|+ ...+ 
T Consensus       222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~-  299 (398)
T PRK10747        222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLV-  299 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHH-
Confidence            111111    1111111223334566667777777788889999999999999999999999999999996554 3322 


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      ..+++  +..+++++++..+++.+...+ ++.+...++.++...+++++|...|++++...    |   .... +..++.
T Consensus       300 ~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P---~~~~-~~~La~  369 (398)
T PRK10747        300 LLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----P---DAYD-YAWLAD  369 (398)
T ss_pred             HHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C---CHHH-HHHHHH
Confidence            33444  456999999999999987655 78888899999999999999999999998742    2   2222 334799


Q ss_pred             HHHHCCChhHHHHHHHHHHHh
Q 012265          270 FKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~  290 (467)
                      ++...|+.++|..+|++.+..
T Consensus       370 ~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        370 ALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999998864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=4.8e-12  Score=119.50  Aligned_cols=254  Identities=16%  Similarity=0.045  Sum_probs=197.2

Q ss_pred             HHHHHHhhhhhcCCCC--ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            6 LIFVRIGQETLTDDNF--AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         6 ~~A~~~~~~~l~~~~~--~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      ..|..+|.+.++.|-.  +-+.-.-+==--..|+|.+|.+.|-+.+|...++..|+..| .+.+++++            
T Consensus       196 ~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllL------------  262 (478)
T KOG1129|consen  196 QKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLL------------  262 (478)
T ss_pred             HHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHH------------
Confidence            4567788887775422  11100000013357999999999999999999999998876 34444322            


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV  163 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~  163 (467)
                                                               ..+|....+...|...+.+.+..+|.++...+-.|.++.
T Consensus       263 -----------------------------------------skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  263 -----------------------------------------SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE  301 (478)
T ss_pred             -----------------------------------------HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence                                                     122223345566777788888899999999889999999


Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      ..+++++|.++|+.+++.+|.+++.+ -..|--|.-.|+.+-|+..|++++... .+|.++..++.+..-.+++|-++..
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEai-Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAI-ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceee-eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999999999999998765 566777888999999999999999876 4899999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHH-HHhccCChhHHHHHHhc
Q 012265          243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLV-TTSAHVDVDKAESYEKR  318 (467)
Q Consensus       243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv-~a~~~~d~~kA~~l~~~  318 (467)
                      |++|+..-    ..+....++|..+|.+....||+.-|...|+-++..+++ .+++.+|. ++....|.+.|.+|+..
T Consensus       381 f~RAlsta----t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  381 FQRALSTA----TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             HHHHHhhc----cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            99998753    223445678999999999999999999999999988876 57777764 45667888888888654

>TIGR00540 hemY_coli hemY protein

Probab=99.43  E-value=2.9e-11  Score=124.14  Aligned_cols=147  Identities=14%  Similarity=0.057  Sum_probs=112.2

Q ss_pred             HHHHHhccccCC----CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHcCChHHHHHHHhc
Q 012265          138 RELVAALPDMFP----DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII-LLARAQVAAAANHPFIAAESLAK  212 (467)
Q Consensus       138 ~~~~~~l~~~~P----~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~-~l~Laql~~~~g~~~~A~~~L~~  212 (467)
                      ...+..+....|    ++....+..+.++...|++++|++.+++.++.+|++.... .+...-.++..++.+.++..+++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            344555555555    5778888889999999999999999999999999986421 02233344556889999999999


Q ss_pred             cccCCC-Ch--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          213 IPDIQH-MP--ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       213 ~~~~~~-~p--~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      .+...+ +|  .+...++.++.++|++++|..+|+.+..+-  ..|   .... +..+|.++...|+.++|..+|++.+.
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--~~p---~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--EQL---DAND-LAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--cCC---CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            987665 77  788899999999999999999999644321  111   1122 33589999999999999999999876


Q ss_pred             h
Q 012265          290 T  290 (467)
Q Consensus       290 ~  290 (467)
                      .
T Consensus       399 ~  399 (409)
T TIGR00540       399 L  399 (409)
T ss_pred             H
Confidence            4

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.5e-10  Score=117.03  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      +...++.+...+|+.+.|+..+...+..|.....+-.....+...+..++...++.+-|..+|.+++...
T Consensus       378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~  447 (652)
T KOG2376|consen  378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW  447 (652)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence            4456688888999999999999977677765443222222233334556778888888999999998865

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.2e-10  Score=123.45  Aligned_cols=275  Identities=13%  Similarity=0.116  Sum_probs=191.8

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      +..|..+++..|-.......|       .++..++++..+|+.+.|+..++.++.++|.+..++..++.-....+.....
T Consensus       180 Y~~al~yyk~al~inp~~~aD-------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~  252 (1018)
T KOG2002|consen  180 YRGALKYYKKALRINPACKAD-------VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY  252 (1018)
T ss_pred             HHHHHHHHHHHHhcCcccCCC-------ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence            345666666666544333322       2567789999999999999999999999997766654221111111121122


Q ss_pred             hHHHHhhhhhhhhhh-----------------hHHH---HHHH-hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDM-----------------QNFQ---LARV-LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA  143 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~-----------------~~~~---~~~~-l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~  143 (467)
                      ..++..+.+...-++                 ++..   +++. +..-....-...-.|+.+..+...|++++|...|..
T Consensus       253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~  332 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME  332 (1018)
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            222222222211100                 1000   0000 000000111122378999999999999999999999


Q ss_pred             ccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC----ChHHHHHHHhccccCCC
Q 012265          144 LPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN----HPFIAAESLAKIPDIQH  218 (467)
Q Consensus       144 l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g----~~~~A~~~L~~~~~~~~  218 (467)
                      ..+.+|++ +.+.+-.+++++..|++..|+..++++++..|++...+ .+||.+|...+    ..+.|..++.+++...+
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm-~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~  411 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM-KILGCLYAHSAKKQEKRDKASNVLGKVLEQTP  411 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH-HHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence            99999998 66778889999999999999999999999999998876 88999998776    67899999999987654


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                       +...+..++.+|.+. +.-.++.+|..|+..+...... . -..++..+|..++..|++.+|...|.+++..
T Consensus       412 ~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~-i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  412 VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ-I-PPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC-C-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence             556788899999765 5555599999999777543322 1 2346888999999999999999999999987

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.39  E-value=5.8e-11  Score=125.92  Aligned_cols=196  Identities=17%  Similarity=0.239  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC----ChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN----KAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~----~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      .+..+..+++.|.++.+..+|+++.+.+|++.....++|.+|...+    +.+.|..++.++++..|.+..++ +.+|++
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~-l~laql  423 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW-LELAQL  423 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH-HHHHHH
Confidence            3456889999999999999999999999999999999999987664    56789999999999999998875 999999


Q ss_pred             HHHcCChHHHHHHHhccccC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-cCC--chHHHHHHHH
Q 012265          197 AAAANHPFIAAESLAKIPDI------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM-TED--NKLSVIMQEA  267 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~-~~~--~~~~~ll~~l  267 (467)
                      |...+-+ .++..|..++++      ..-|.++..++.++...|++++|...|..|........ ++.  .....+...+
T Consensus       424 ~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl  502 (1018)
T KOG2002|consen  424 LEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL  502 (1018)
T ss_pred             HHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence            9765544 448888887631      13578899999999999999999999999998732111 111  1112345668


Q ss_pred             HHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH-HHHhccCChhHHHHHHhc
Q 012265          268 ASFKLRHGREEDASHLFEELVKTHGS-IEALVGL-VTTSAHVDVDKAESYEKR  318 (467)
Q Consensus       268 a~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L-v~a~~~~d~~kA~~l~~~  318 (467)
                      |.++-..++++.|..+|..+++.+|. .++..+| +++.+..+...|..+++.
T Consensus       503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~  555 (1018)
T KOG2002|consen  503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD  555 (1018)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence            99999999999999999999999987 5666666 466666666666666554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.39  E-value=3.4e-10  Score=127.31  Aligned_cols=187  Identities=13%  Similarity=0.073  Sum_probs=132.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHc
Q 012265          124 RVLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~  200 (467)
                      ....+...|++++|.++++.+.+.. +.+...+......|++.|++++|+.+|.++...  .|+..  .+..+...|...
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~--TynsLI~a~~k~  662 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV--FFSALVDVAGHA  662 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhC
Confidence            4446777888888888888887665 233344445556678888888888888888776  46543  236778888888


Q ss_pred             CChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265          201 NHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE  278 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~  278 (467)
                      |++++|..+|+.+.+..  ++..++..|+..|.+.|++++|..+|+++...  ..   .++. ..|..+...|.+.|+++
T Consensus       663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~---~Pdv-vtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KL---RPTV-STMNALITALCEGNQLP  736 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC---CCCH-HHHHHHHHHHHHCCCHH
Confidence            88888888888887644  34556778888888888888888888877542  11   1222 23555677788888888


Q ss_pred             HHHHHHHHHHHhc--CCHHHHHHHHHHhcc-CChhHHHHHHhc
Q 012265          279 DASHLFEELVKTH--GSIEALVGLVTTSAH-VDVDKAESYEKR  318 (467)
Q Consensus       279 ~A~~~le~ll~~~--pd~~ala~Lv~a~~~-~d~~kA~~l~~~  318 (467)
                      +|..+|+++....  ||...+..++.++.. .+.+.|..+...
T Consensus       737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~  779 (1060)
T PLN03218        737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ  779 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888887654  777777777777654 446777666544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.39  E-value=5.7e-11  Score=107.73  Aligned_cols=203  Identities=15%  Similarity=0.079  Sum_probs=160.8

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR  106 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  106 (467)
                      ..|.+.|++|||.-|..+|++..|...++++|+.+|++..++++.+.-+-.++....+.+.+++...+.+          
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----------  100 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP----------  100 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------
Confidence            5678899999999999999999999999999999999999998776555555555566677776544322          


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc--cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          107 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD--MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       107 ~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~--~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                               +...+..|.+..++..|++++|...|+.++.  .+|.....+...+....+.|+.+.|...|++.++.+|+
T Consensus       101 ---------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         101 ---------NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             ---------CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence                     2345788999999999999999999998874  23333444556666678999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ..... +.+++.+...|+|..|...|+....-. .....+.+.+.|-...|+.+.|-.+=.+....
T Consensus       172 ~~~~~-l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         172 FPPAL-LELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             CChHH-HHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            98765 999999999999999999999886432 33444556677888889988776665554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=6e-11  Score=116.44  Aligned_cols=196  Identities=17%  Similarity=0.064  Sum_probs=151.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      .+.+.+....+++.+.++...|++++|...++++++.+|++..++...|.++...|++++|+..+.++++.+|++... +
T Consensus        57 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-~  135 (296)
T PRK11189         57 DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-Y  135 (296)
T ss_pred             cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-H
Confidence            455667778899999999999999999999999999999999999999999999999999999999999999999875 4


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~  270 (467)
                      +.+|.++...|++++|+..|++++...+..........++...+++++|+..|.+++...   .  ++.    +. .+.+
T Consensus       136 ~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~---~--~~~----~~-~~~~  205 (296)
T PRK11189        136 LNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL---D--KEQ----WG-WNIV  205 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---C--ccc----cH-HHHH
Confidence            889999999999999999999999876633333333345667789999999998766432   1  111    21 2455


Q ss_pred             HHHCCChhHHHHHHHHHHH-------hcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          271 KLRHGREEDASHLFEELVK-------THGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       271 ~l~~g~~~~A~~~le~ll~-------~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++..|+..++ ..|+.+.+       ..|+ .+++..+...+ ...+.+.|..+.++
T Consensus       206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~  261 (296)
T PRK11189        206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL  261 (296)
T ss_pred             HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5667777654 35555543       2222 35677777776 45668889888654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.37  E-value=4.7e-10  Score=126.14  Aligned_cols=260  Identities=13%  Similarity=0.177  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCC-CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p-~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      +.-+...|.+.|++++|..+|+.+..... .|..++..+...+..   .++..+++..+..+...             .+
T Consensus       475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k---~G~~eeAl~lf~~M~~~-------------Gv  538 (1060)
T PLN03218        475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR---AGQVAKAFGAYGIMRSK-------------NV  538 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHc-------------CC
Confidence            34455667777777777777777766542 244444333333322   23344444444332111             01


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc----cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-CcHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPD----MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP-DKSK  187 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~----~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P-~~~~  187 (467)
                      .+  ....+......+...|++++|.++++.+..    ..|+... +......|.+.|++++|.++++.+.+... .+..
T Consensus       539 ~P--D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT-ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~  615 (1060)
T PLN03218        539 KP--DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT-VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE  615 (1060)
T ss_pred             CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence            00  012333445567788999999999998864    3465432 33344568899999999999999988752 2333


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                       .+..+...|.+.|++++|+.+|+.+....  ++..++..++..|.+.|++++|..+|+.+...   ...  +.. ..+.
T Consensus       616 -tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---G~~--pd~-~tyn  688 (1060)
T PLN03218        616 -VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ---GIK--LGT-VSYS  688 (1060)
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--CCH-HHHH
Confidence             34788899999999999999999988643  34456778899999999999999999998753   111  111 2355


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHh--cCCHHHHHHHHHHhcc-CChhHHHHHHhcC
Q 012265          266 EAASFKLRHGREEDASHLFEELVKT--HGSIEALVGLVTTSAH-VDVDKAESYEKRL  319 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~--~pd~~ala~Lv~a~~~-~d~~kA~~l~~~L  319 (467)
                      .+...|.+.|++++|..+|+++...  .||...+..|+.+|.. .+.++|..+...+
T Consensus       689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5788899999999999999999765  3888888889999855 5578998887643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.7e-10  Score=116.18  Aligned_cols=267  Identities=10%  Similarity=0.010  Sum_probs=212.5

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      ...+..-.|..+..++++.+-.++.+.++..+|-+...+.+-..-++-+++....+.   .-.++++..|+         
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~---lsh~LV~~yP~---------  310 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL---LSHKLVDLYPS---------  310 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH---HHHHHHHhCCC---------
Confidence            445667789999999999999999999999999888776543334544544333222   11222333332         


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                             ...-++-.+.-|+-.|++++|++.+.+....+|....+|+.-|..+.-++..++|+..|..+.+..|......
T Consensus       311 -------~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~  383 (611)
T KOG1173|consen  311 -------KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS  383 (611)
T ss_pred             -------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence                   2235777888999999999999999999999999999999999999999999999999999999999865544


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA  268 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la  268 (467)
                       |.+|.=|...+++.-|...|..+..+.+ +|-+...++-++-..+.+.+|..+|+.++..-+...++......++..+|
T Consensus       384 -LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG  462 (611)
T KOG1173|consen  384 -LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG  462 (611)
T ss_pred             -HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence             7889999999999999999999998876 77777778888888899999999999999665554433333455677899


Q ss_pred             HHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhcc-CChhHHHHHH
Q 012265          269 SFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAH-VDVDKAESYE  316 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~-~d~~kA~~l~  316 (467)
                      -++.+.+.+++|+..|++++...| +..+.+.+...|.. .++++|..+.
T Consensus       463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence            999999999999999999999986 46777777777754 4577876654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.5e-10  Score=110.03  Aligned_cols=241  Identities=13%  Similarity=0.108  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ...-+|.++...|++++|+-.|+++.-.+|......-+-+.-   +....+..+.-+.+..+...            .+ 
T Consensus       234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~------------~~-  297 (564)
T KOG1174|consen  234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAK------------VK-  297 (564)
T ss_pred             HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhh------------hh-
Confidence            345679999999999999999999999999655443222111   11122222222222221110            01 


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                         |...-++-.+.+++...++..|....++.+..+|.+..++++++.++...++..+|+-.++.+....|-+... +--
T Consensus       298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~-Y~G  373 (564)
T KOG1174|consen  298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI-YRG  373 (564)
T ss_pred             ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH-HHH
Confidence               1222345567778888999999999999999999999999999999999999999999999999988887664 467


Q ss_pred             HHHHHHHcCChHHHHHHHhcc------------------------------------ccCCC-ChhHHHHHHHHHHHcCC
Q 012265          193 RAQVAAAANHPFIAAESLAKI------------------------------------PDIQH-MPATVATLVALKERAGD  235 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~------------------------------------~~~~~-~p~~~~~l~~ly~~~g~  235 (467)
                      |...|+.+|++.+|..+-..+                                    +.+.+ ..+.+..++.++...|.
T Consensus       374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence            888899999988876553322                                    11222 22346678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHH
Q 012265          236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLV  301 (467)
Q Consensus       236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv  301 (467)
                      +++++.+|++++..|.+     .   .++..+|.++...+.+++|.+.|..++.++|.. .++-||-
T Consensus       454 ~~D~i~LLe~~L~~~~D-----~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  454 TKDIIKLLEKHLIIFPD-----V---NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             cchHHHHHHHHHhhccc-----c---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            99999999999876521     2   357778999999999999999999999999864 4455553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=8.1e-11  Score=107.97  Aligned_cols=185  Identities=21%  Similarity=0.226  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      ++-..+.+.+..|+.+-|..+++.+...||++.....+.|.++...|.+++|+++|..+++.+|.+... +-...-+...
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-~KRKlAilka  132 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-RKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-HHHHHHHHHH
Confidence            555778889999999999999999999999999999999999999999999999999999999998654 4555667788


Q ss_pred             cCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC--
Q 012265          200 ANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR--  276 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~--  276 (467)
                      +|+.-+|+..+...++.- .+++.|..|+.+|...|++++|.-++++.+-..       |.....+..+|.++.-.|.  
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------PFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHH
Confidence            999999999999998743 378999999999999999999999999988541       2333457778888877664  


Q ss_pred             -hhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCC-hhHH
Q 012265          277 -EEDASHLFEELVKTHG-SIEALVGLVTTSAHVD-VDKA  312 (467)
Q Consensus       277 -~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d-~~kA  312 (467)
                       .+-|..+|+++++.+| +..++.|+.+|.+++. ..++
T Consensus       206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  206 NLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence             4579999999999998 6788999988877665 4554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=2.1e-10  Score=113.69  Aligned_cols=190  Identities=16%  Similarity=0.108  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      +...+..++..|+.-.|...++.+++.+|.++..++..+.+|...++..+-.+.+.++...+|++++. ++..||+++-.
T Consensus       329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv-YyHRgQm~flL  407 (606)
T KOG0547|consen  329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV-YYHRGQMRFLL  407 (606)
T ss_pred             HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch-hHhHHHHHHHH
Confidence            33456677778898999999999999999999988999999999999999999999999999999875 59999999999


Q ss_pred             CChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265          201 NHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED  279 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~  279 (467)
                      ++|++|+.-|++++.+++... .+..++.+..++++++++...|+.+...+++    -+....+   .|.++..+++++.
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~----~~Evy~~---fAeiLtDqqqFd~  480 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN----CPEVYNL---FAEILTDQQQFDK  480 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHH---HHHHHhhHHhHHH
Confidence            999999999999999876332 2445555566788999999999999987743    2222222   5899999999999


Q ss_pred             HHHHHHHHHHhcCCH-------HHHHH--HHHHhccCChhHHHHHHhc
Q 012265          280 ASHLFEELVKTHGSI-------EALVG--LVTTSAHVDVDKAESYEKR  318 (467)
Q Consensus       280 A~~~le~ll~~~pd~-------~ala~--Lv~a~~~~d~~kA~~l~~~  318 (467)
                      |.+.|..++.+.|..       -.+++  ++...-..|+..|+.|+++
T Consensus       481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K  528 (606)
T KOG0547|consen  481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK  528 (606)
T ss_pred             HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence            999999999998761       12222  2222234778888888765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=9.2e-10  Score=104.27  Aligned_cols=259  Identities=13%  Similarity=0.085  Sum_probs=179.7

Q ss_pred             HHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC---chHHHH--HHHhhhhhccC
Q 012265            6 LIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA---DESSFA--VAVNNLVALKG   80 (467)
Q Consensus         6 ~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~---d~~~~~--va~nnl~~l~~   80 (467)
                      +.|-+++.+.+..+   ++-++     ..+.||.++-..|..|.|+.+-+.++.. |+   +.-.++  -++.++.+.+=
T Consensus        52 dKAvdlF~e~l~~d---~~t~e-----~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          52 DKAVDLFLEMLQED---PETFE-----AHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             chHHHHHHHHHhcC---chhhH-----HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhh
Confidence            34666677776533   34443     3566899999999999999999998876 43   112222  12234443332


Q ss_pred             CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH---H-
Q 012265           81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---L-  156 (467)
Q Consensus        81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~---l-  156 (467)
                      ...+.+.+..+....+                   -...+.-....+|-....+++|++..+++.+..|+....-   + 
T Consensus       123 ~DRAE~~f~~L~de~e-------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy  183 (389)
T COG2956         123 LDRAEDIFNQLVDEGE-------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY  183 (389)
T ss_pred             hhHHHHHHHHHhcchh-------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence            2233333333321110                   1112334456677778889999999999998887754421   1 


Q ss_pred             -HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHHHHc
Q 012265          157 -LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERA  233 (467)
Q Consensus       157 -l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~~~  233 (467)
                       -.|..+....+.+.|...+.+++..+|..+.+ ...+|++++..|+|..|+..|+.+++.++  -+.+.-.|...|.+.
T Consensus       184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         184 CELAQQALASSDVDRARELLKKALQADKKCVRA-SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence             34555567888999999999999999998775 48999999999999999999999987543  566677889999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV  301 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv  301 (467)
                      |+.++.+..|..+.+.+.    + ...   ...++.+-....-.++|..++.+.+...|+......|+
T Consensus       263 g~~~~~~~fL~~~~~~~~----g-~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~  322 (389)
T COG2956         263 GKPAEGLNFLRRAMETNT----G-ADA---ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM  322 (389)
T ss_pred             CCHHHHHHHHHHHHHccC----C-ccH---HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence            999999999999887542    1 222   22256666666677788888888888889876666655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.31  E-value=6.1e-10  Score=122.13  Aligned_cols=184  Identities=9%  Similarity=0.040  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ...-.|.+..++|++++|+..|+++++.+|.+.....-...-+..+   ++...++..+.+.....+            .
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~---G~~~~A~~~~eka~~p~n------------~  100 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA---GRDQEVIDVYERYQSSMN------------I  100 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc---CCcHHHHHHHHHhccCCC------------C
Confidence            4566788999999999999999999999998853322111111112   344555555554432100            0


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                          ........+.++...|++++|+++++++++.+|++..+.+.++.++...++.++|+..++++...+|+... . +.
T Consensus       101 ----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~-l~  174 (822)
T PRK14574        101 ----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-Y-MT  174 (822)
T ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-H-HH
Confidence                11233445778888999999999999999999999888777788888999999999999999999998643 2 56


Q ss_pred             HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH
Q 012265          193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID  237 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~  237 (467)
                      ++.++...++..+|+..|+++++..+ ++.++..++.++...|-..
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence            67777778888779999999987655 5556555555555555333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.30  E-value=2e-09  Score=108.24  Aligned_cols=263  Identities=13%  Similarity=0.022  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      .+..|.++...|++++|..++++++...|.|..+..+ ..++....... ....+.+.+....+.               
T Consensus        46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------  109 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE---------------  109 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC---------------
Confidence            4557899999999999999999999999988865543 22332232221 122222222111000               


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH---HH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK---II  189 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~---~~  189 (467)
                       .+.......+.+.+++..|++++|...+++++...|++..++...+.++...|++++|+..+++.+...|.+..   ..
T Consensus       110 -~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         110 -NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence             01122355678899999999999999999999999999988889999999999999999999999998764322   12


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhH--H--H-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-CchHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT--V--A-TLVALKERAGDIDGAAAVLDSAIKWWLNAMTE-DNKLSV  262 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~--~--~-~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~-~~~~~~  262 (467)
                      ++.++.+++.+|++++|+.+|+++....+ .+.+  .  . .+...+...|....+..+ +.+........+. ...+..
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~  267 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFND  267 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHH
Confidence            35789999999999999999999865433 1111  1  1 223334445544333333 3333332211111 111222


Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhc-C---C----HHHHH---HHHHHhccCChhHHHHHH
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTH-G---S----IEALV---GLVTTSAHVDVDKAESYE  316 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~-p---d----~~ala---~Lv~a~~~~d~~kA~~l~  316 (467)
                        ...+..+...|+.++|..+++.+.... .   .    ..+.+   .-+..+...|.+.|..++
T Consensus       268 --~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L  330 (355)
T cd05804         268 --LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL  330 (355)
T ss_pred             --HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence              235777889999999999999987643 2   1    11222   223345677788886664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.30  E-value=1.6e-10  Score=116.12  Aligned_cols=201  Identities=17%  Similarity=0.062  Sum_probs=138.4

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchH---HHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES---SFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL  104 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~---~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  104 (467)
                      +++...++.+|+++...|+.++|...|..+....+.+..   ..++.+..+..   .++...+...+.++....|+.   
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~P~~---   76 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI---AGDLPKALALLEQLLDDYPRD---   76 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCc---
Confidence            456677889999999999999999999999888775533   22222222221   234555555554433322211   


Q ss_pred             HHHhhcCCCHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          105 ARVLDLRLSPKQREAIYA---NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       105 ~~~l~~kL~~~q~~~l~~---n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                                   ..+..   ....+....+..+.+.+.+......+|+...+..+.+.++...|++++|+..++++++.
T Consensus        77 -------------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804          77 -------------LLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             -------------HHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                         11222   22222333556666666666655667777667777888888999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA----TVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~----~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      .|++... +..++.+|...|++++|+..|++.++..+ .+.    .+..++.+|..+|++++|+.+|++++.
T Consensus       144 ~p~~~~~-~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         144 NPDDAWA-VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             CCCCcHH-HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            9988654 47889999999999999999998886543 222    244688889999999999999988753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.29  E-value=1.7e-10  Score=109.09  Aligned_cols=171  Identities=13%  Similarity=0.008  Sum_probs=131.2

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV  107 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  107 (467)
                      ..-...++++|..+...|++++|+..|+.++...|+++...                                       
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---------------------------------------   70 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAE---------------------------------------   70 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHH---------------------------------------
Confidence            33446789999999999999999999999999888553110                                       


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhc--------CChhHHHHHHH
Q 012265          108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRE--------NKAGKAEELLG  176 (467)
Q Consensus       108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~--------~~~~~A~~~l~  176 (467)
                                 .++++.+.+++..|++++|+..++.++..+|++..   +++..+.++...        |++++|++.++
T Consensus        71 -----------~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~  139 (235)
T TIGR03302        71 -----------QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ  139 (235)
T ss_pred             -----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence                       12445577777778888888888888888887665   455666666554        67778888888


Q ss_pred             HHHHhCCCcHHHH----------------HHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCH
Q 012265          177 QFAEKLPDKSKII----------------LLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDI  236 (467)
Q Consensus       177 ~~l~~~P~~~~~~----------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~  236 (467)
                      +++..+|++....                .+.+|.+|+.+|++.+|+..|+.+++..+    .+..+..++.+|...|++
T Consensus       140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            8888888764321                13678899999999999999999986432    356788999999999999


Q ss_pred             HHHHHHHHHHHH
Q 012265          237 DGAAAVLDSAIK  248 (467)
Q Consensus       237 ~~A~~~l~~al~  248 (467)
                      ++|..+++.+..
T Consensus       220 ~~A~~~~~~l~~  231 (235)
T TIGR03302       220 DLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHHh
Confidence            999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.29  E-value=2.5e-10  Score=125.17  Aligned_cols=194  Identities=10%  Similarity=-0.013  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ...+..+++.++.|++++|+..|.++++.+|.+..+..-.+.++...|+.++|+..+++++...|..... .+.+|.+|.
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~-llalA~ly~  113 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRG-LASAARAYR  113 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH-HHHHHHHHH
Confidence            3567889999999999999999999999999996443455566677899999999999999444444433 356688999


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE  277 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~  277 (467)
                      .+|++++|+.+|+++++.++ ++.++..++.+|...++.++|+..+++++...       +..... ..++.++...++.
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p~~~~~-l~layL~~~~~~~  185 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------PTVQNY-MTLSYLNRATDRN  185 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------cchHHH-HHHHHHHHhcchH
Confidence            99999999999999998876 78888888999999999999999999987642       112222 2246666667788


Q ss_pred             hHHHHHHHHHHHhcCC-HHHHHHHHHHhccCC-hhHHHHHHhcCCC
Q 012265          278 EDASHLFEELVKTHGS-IEALVGLVTTSAHVD-VDKAESYEKRLKP  321 (467)
Q Consensus       278 ~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d-~~kA~~l~~~L~~  321 (467)
                      .+|+..|+++++.+|+ .+++..++.+.+... ...|.++++.-|-
T Consensus       186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~  231 (822)
T PRK14574        186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN  231 (822)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence            7799999999999986 677788888877666 4688899887763

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=4.2e-09  Score=99.85  Aligned_cols=251  Identities=15%  Similarity=0.116  Sum_probs=184.3

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      +-.+.-+......|+|.++|-.++..+|....+.+.+ .|++-  ..+++..+++.-..+...            ..+|.
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL-GnLfR--sRGEvDRAIRiHQ~L~~s------------pdlT~  103 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL-GNLFR--SRGEVDRAIRIHQTLLES------------PDLTF  103 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH-HHHHH--hcchHHHHHHHHHHHhcC------------CCCch
Confidence            4456677888999999999999999988777777644 46643  334455554432222221            34677


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HH--
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--II--  189 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~--  189 (467)
                      .|+.-+.+..+.=|+..|=+|.|..+|..+.. .|+... +.--+..+|....+|.+|+..-+++....|+.-.  .+  
T Consensus       104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf  182 (389)
T COG2956         104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF  182 (389)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence            78888888999999999999999999999874 344433 4445667888999999999999999888776422  11  


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA  268 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la  268 (467)
                      +--||+.++...+.+.|...+.+++..++ .-.+-..++.++...|++..|+..++.+++..      ...+..++..+-
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn------~~yl~evl~~L~  256 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN------PEYLSEVLEMLY  256 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC------hHHHHHHHHHHH
Confidence            22467777778999999999999987765 33445578999999999999999999988742      234445566677


Q ss_pred             HHHHHCCChhHHHHHHHHHHHhcCCH---HHHHHHHHHhccC
Q 012265          269 SFKLRHGREEDASHLFEELVKTHGSI---EALVGLVTTSAHV  307 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~~~pd~---~ala~Lv~a~~~~  307 (467)
                      .+|...|+.++....+....+.++..   .+++.++......
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~  298 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI  298 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh
Confidence            88899999999999999999888653   3455555544333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.26  E-value=7.5e-10  Score=121.53  Aligned_cols=186  Identities=12%  Similarity=0.036  Sum_probs=94.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcC
Q 012265          125 VLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g  201 (467)
                      ...|...|++++|.++|+++...  .|+... +......+.+.|++++|.+++..+++.. +.+.. +...|...|.+.|
T Consensus       297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G  374 (697)
T PLN03081        297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFT-FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWG  374 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCC
Confidence            33444555555555555555432  232221 2222333455555566655555555543 12221 2355566666666


Q ss_pred             ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265          202 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                      ++++|..+|+.+.+  ++...|..++..|.+.|+.++|+.+|+++...  ...|   +.. .+..+...+...|..++|.
T Consensus       375 ~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~P---d~~-T~~~ll~a~~~~g~~~~a~  446 (697)
T PLN03081        375 RMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAP---NHV-TFLAVLSACRYSGLSEQGW  446 (697)
T ss_pred             CHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC---CHH-HHHHHHHHHhcCCcHHHHH
Confidence            66666666665543  23334555666666666666666666665532  1111   111 1222344455666666666


Q ss_pred             HHHHHHHHhc---CCHHHHHHHHHHhcc-CChhHHHHHHhcCC
Q 012265          282 HLFEELVKTH---GSIEALVGLVTTSAH-VDVDKAESYEKRLK  320 (467)
Q Consensus       282 ~~le~ll~~~---pd~~ala~Lv~a~~~-~d~~kA~~l~~~L~  320 (467)
                      .+|+.+.+..   |+......++..+.. .+.+.|..+....|
T Consensus       447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~  489 (697)
T PLN03081        447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP  489 (697)
T ss_pred             HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence            6666665432   444555555555543 33566666665554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.26  E-value=1.2e-09  Score=115.47  Aligned_cols=259  Identities=14%  Similarity=0.094  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      ++-+|.+++..|++++|+.++.+|++++|.+...+..++.-+ -..  ++...++.-..-+.           .    |.
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy-Eqr--Gd~eK~l~~~llAA-----------H----L~  203 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIY-EQR--GDIEKALNFWLLAA-----------H----LN  203 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-HHc--ccHHHHHHHHHHHH-----------h----cC
Confidence            455788999999999999999999999998887776543222 111  22333322211110           1    11


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC----------
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP----------  183 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P----------  183 (467)
                      +..+ ..+.-.+-+..+.|.+++|+-++.++++.+|.+.....-.+.+|.+.|+...|...+.+++...|          
T Consensus       204 p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~  282 (895)
T KOG2076|consen  204 PKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL  282 (895)
T ss_pred             CCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence            1111 23334444444444444444444444444444444444444444444444444444444444444          


Q ss_pred             -----------------------------C--cHHHHHHHHHHHHHHcCChHHHHHHHhccc------------------
Q 012265          184 -----------------------------D--KSKIILLARAQVAAAANHPFIAAESLAKIP------------------  214 (467)
Q Consensus       184 -----------------------------~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~------------------  214 (467)
                                                   +  ..+.+ .+++.+|+....++.|...+....                  
T Consensus       283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~-ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~  361 (895)
T KOG2076|consen  283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL-NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR  361 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence                                         1  11112 455666666666665554432110                  


Q ss_pred             ---------------------------------------------c--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          215 ---------------------------------------------D--IQHMPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       215 ---------------------------------------------~--~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                                                                   .  ....++++..++.+|...|.+.+|+.+|..++
T Consensus       362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~  441 (895)
T KOG2076|consen  362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT  441 (895)
T ss_pred             ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence                                                         0  00134555667778888888888888888777


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc-cCChhHHHHHHhc
Q 012265          248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA-HVDVDKAESYEKR  318 (467)
Q Consensus       248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~-~~d~~kA~~l~~~  318 (467)
                      ...    +  .+...+|..+|.+|...|.+++|+..|++++...|+ .++.+.|..-+- ..++++|.+.+.+
T Consensus       442 ~~~----~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  442 NRE----G--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             cCc----c--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            531    1  222446778999999999999999999999999986 688888877775 4557888766544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.26  E-value=3.3e-10  Score=104.36  Aligned_cols=159  Identities=14%  Similarity=0.042  Sum_probs=122.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      -..+|+..|+++......+.+.  .|..         -+...++.++++..|++.+..+|++...+ +.||++|...|++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w-~~Lg~~~~~~g~~   89 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCH
Confidence            4567888999888765543332  1211         01125677899999999999999998865 9999999999999


Q ss_pred             HHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265          204 FIAAESLAKIPDIQH-MPATVATLVAL-KERAGD--IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED  279 (467)
Q Consensus       204 ~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~--~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~  279 (467)
                      ++|+..|++++.+.+ ++.++..++.+ |...|+  +++|..+|++++...       +.....+..+|..++..|++++
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-------ANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHH
Confidence            999999999998876 78888888885 577787  599999999999752       2222345668999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 012265          280 ASHLFEELVKTHGSIEALVGLV  301 (467)
Q Consensus       280 A~~~le~ll~~~pd~~ala~Lv  301 (467)
                      |+..|+++++..|..+..+.++
T Consensus       163 Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        163 AIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHHhhCCCCccHHHHH
Confidence            9999999999986433333443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.2e-09  Score=110.28  Aligned_cols=256  Identities=14%  Similarity=0.109  Sum_probs=199.3

Q ss_pred             HHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhH
Q 012265            7 IFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND   86 (467)
Q Consensus         7 ~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~   86 (467)
                      +...||.+.|+.+.+..+     ..|  +++| ++...|+.-+=.-+=.++....|+.+..++..+.=+++++   +..+
T Consensus       262 ~c~kit~~lle~dpfh~~-----~~~--~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~---k~se  330 (611)
T KOG1173|consen  262 ECLKITEELLEKDPFHLP-----CLP--LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG---KYSE  330 (611)
T ss_pred             HHHHHhHHHHhhCCCCcc-----hHH--HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc---CcHH
Confidence            445566666665554332     234  4567 7888999888888888899999988877765555555553   4567


Q ss_pred             HHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC
Q 012265           87 SLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN  166 (467)
Q Consensus        87 a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~  166 (467)
                      |.+.+.+...           ++..     ....+...+..+...|.-|+|...+..+.+.+|+...+.++.+.-|.+.+
T Consensus       331 ARry~SKat~-----------lD~~-----fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  331 ARRYFSKATT-----------LDPT-----FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             HHHHHHHHhh-----------cCcc-----ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence            7777765432           2222     22356677888888999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc----CCC-C---hhHHHHHHHHHHHcCCHHH
Q 012265          167 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD----IQH-M---PATVATLVALKERAGDIDG  238 (467)
Q Consensus       167 ~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~-~---p~~~~~l~~ly~~~g~~~~  238 (467)
                      ..+-|.+.+.+++...|.++-.. --+|-++...+.|.+|..+|+..+.    +.. .   ..++..||.+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai~P~Dplv~-~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAPSDPLVL-HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhh-hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            99999999999999999998654 6788888899999999999999873    111 1   1246789999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHH
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEAL  297 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~al  297 (467)
                      |+..+++++..-       +.....+..+|.++.-.|+++.|++.|.++|.+.|+....
T Consensus       474 AI~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~  525 (611)
T KOG1173|consen  474 AIDYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI  525 (611)
T ss_pred             HHHHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence            999999999752       2223456668999999999999999999999999986443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.25  E-value=1.3e-09  Score=111.31  Aligned_cols=249  Identities=16%  Similarity=0.118  Sum_probs=191.4

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..|+..|--+...|+..+|..++..++..+|++..+.+.+ .-+..  ....+..+...|.+.....             
T Consensus       585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa-vKle~--en~e~eraR~llakar~~s-------------  648 (913)
T KOG0495|consen  585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA-VKLEF--ENDELERARDLLAKARSIS-------------  648 (913)
T ss_pred             hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHhh--ccccHHHHHHHHHHHhccC-------------
Confidence            4567777888888999999999999999999887777643 22211  1123333333332221110             


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                          -..-+++-.+.+.-..+..++|++++++.++.||+..-.++++++++.+.++.+.|...|..-++..|..+..+ +
T Consensus       649 ----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW-l  723 (913)
T KOG0495|consen  649 ----GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW-L  723 (913)
T ss_pred             ----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH-H
Confidence                01235667788888899999999999999999999999999999999999999999999999999999998765 9


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------------
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM----------------  254 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~----------------  254 (467)
                      .|+.+-...|+.-.|..+|++..--. .+..+|...+.+-.+.|..+.|..++.+|++..+.+.                
T Consensus       724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk  803 (913)
T KOG0495|consen  724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK  803 (913)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence            99999999999999999999986333 3667888888899999999999999998886432210                


Q ss_pred             ----------cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265          255 ----------TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS  304 (467)
Q Consensus       255 ----------~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~  304 (467)
                                ..++.   ++..+|.++....+++.|.+.|+++++.+|| -++++.+..-+
T Consensus       804 Tks~DALkkce~dph---Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe  861 (913)
T KOG0495|consen  804 TKSIDALKKCEHDPH---VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE  861 (913)
T ss_pred             hHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence                      11222   3555787777888999999999999999988 47888776655

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.24  E-value=4.7e-10  Score=120.89  Aligned_cols=157  Identities=11%  Similarity=0.054  Sum_probs=130.8

Q ss_pred             HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      .++...+..+...+|.+..+++++|.+....|.+++|+.+++.+++..|++..+ +..++.++.+.+++++|+.++++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-FILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhccHHHHHHHHHHHh
Confidence            334444555667799999999999999999999999999999999999999875 5899999999999999999999999


Q ss_pred             cCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          215 DIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       215 ~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +..+ ++.....++.++.+.|++++|+.+|++++.-    .   +....++..+|..+...|+.++|...|+++++...+
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ----H---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            8776 7778889999999999999999999999862    1   222345677899999999999999999999998743


Q ss_pred             -HHHHHH
Q 012265          294 -IEALVG  299 (467)
Q Consensus       294 -~~ala~  299 (467)
                       ...+..
T Consensus       221 ~~~~~~~  227 (694)
T PRK15179        221 GARKLTR  227 (694)
T ss_pred             chHHHHH
Confidence             444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.7e-10  Score=116.72  Aligned_cols=186  Identities=13%  Similarity=0.089  Sum_probs=158.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      |-.+..++..|.+.+|.-+|+..++.+|++..++..++.++...++-..|+..|+++++.+|++..++ ..||--|..+|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaL-maLAVSytNeg  367 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEAL-MALAVSYTNEG  367 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHH-HHHHHHHhhhh
Confidence            45788999999999999999999999999999999999999999999999999999999999999876 99999999999


Q ss_pred             ChHHHHHHHhcccc------------------------------------------CC--CChhHHHHHHHHHHHcCCHH
Q 012265          202 HPFIAAESLAKIPD------------------------------------------IQ--HMPATVATLVALKERAGDID  237 (467)
Q Consensus       202 ~~~~A~~~L~~~~~------------------------------------------~~--~~p~~~~~l~~ly~~~g~~~  237 (467)
                      .-.+|+.+|.+.+.                                          ..  .+|++...|+-||...|+++
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            99999999997731                                          00  24566777888888899999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCC-hhHHHHH
Q 012265          238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVD-VDKAESY  315 (467)
Q Consensus       238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d-~~kA~~l  315 (467)
                      .|+.+|+.|+..    .   |+-..+|..+|..+....+.++|+..|.+++++.|. ..+..+|..++.... ...|..+
T Consensus       448 raiDcf~~AL~v----~---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  448 RAVDCFEAALQV----K---PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             HHHHHHHHHHhc----C---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            999999999974    2   222457999999999999999999999999999987 577788877776555 4555444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.23  E-value=3.9e-10  Score=98.63  Aligned_cols=129  Identities=21%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLAR  193 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~L  193 (467)
                      ...|..++..+..++.+.+...++.+.+.+|++   ..+.+..|.+++..|++++|+..|+.++...|+..  ..+++.|
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            345566677778999999999999999999998   44577889999999999999999999999887653  3456889


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      |.+++.+|++++|+..|+.+....+.+.+...++.+|..+|++++|+..|++|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998876555677778889999999999999999998874

>PLN03077 Protein ECB2; Provisional

Probab=99.23  E-value=4.9e-09  Score=117.80  Aligned_cols=186  Identities=12%  Similarity=0.096  Sum_probs=128.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcHHHH------------
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKSKII------------  189 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~~~~------------  189 (467)
                      .....|...|++++|.++|+.+...  + ...+-.....|.+.|++++|+.+++++... .|+.....            
T Consensus       429 ~Li~~y~k~g~~~~A~~vf~~m~~~--d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l  505 (857)
T PLN03077        429 ALIEMYSKCKCIDKALEVFHNIPEK--D-VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL  505 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC--C-eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence            3455677888999999999888653  2 223334445567888888888888887654 34432211            


Q ss_pred             ---------------------HHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          190 ---------------------LLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       190 ---------------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                                           ...|...|.+.|++++|..+|+.+   ..+...|..++..|.+.|+.++|+.+|+++..
T Consensus       506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE  582 (857)
T ss_pred             HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                 113447788888888888888876   34556677888888888999999998888765


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCHHHHHHHHHHhcc-CChhHHHHHHhcCC
Q 012265          249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSIEALVGLVTTSAH-VDVDKAESYEKRLK  320 (467)
Q Consensus       249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~~ala~Lv~a~~~-~d~~kA~~l~~~L~  320 (467)
                      .  ...|+...+.    .+...+...|..++|..+|+.+...+   |+......++.++.. .+.+.|+.+.+.+|
T Consensus       583 ~--g~~Pd~~T~~----~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~  652 (857)
T PLN03077        583 S--GVNPDEVTFI----SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP  652 (857)
T ss_pred             c--CCCCCcccHH----HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            2  2223322332    23345777888888988888888443   677777888888755 44788888888775

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=7.5e-09  Score=102.28  Aligned_cols=260  Identities=12%  Similarity=0.029  Sum_probs=182.7

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      .++|+.++.+.+..|.+-=+|++-        ...++....+-.+---+-+.+...+---+.+..++ .|++++++  +-
T Consensus       278 fD~a~s~Feei~knDPYRl~dmdl--------ySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI-aNYYSlr~--eH  346 (559)
T KOG1155|consen  278 FDQAESVFEEIRKNDPYRLDDMDL--------YSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII-ANYYSLRS--EH  346 (559)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHH--------HhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee-hhHHHHHH--hH
Confidence            367788888887776655444321        12222222222221222233344433334455443 36666654  33


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                      ..+...|.+....+|+                ...++.-.+.=|+.+.+...|++.+..+++.+|.+..+++-.++.|..
T Consensus       347 EKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             HHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            4455555544332221                224555668888999999999999999999999999999999999998


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL  243 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l  243 (467)
                      .+-.-=|+=.+++++...|+|...+ .+||+.|.+.++.++|+.+|.+++.... ....+..|+.+|.+.++.++|...|
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw-~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLW-VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence            8888899999999999999998765 9999999999999999999999987654 3445668999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      ++-+.-.......++....+..-++..+.+.+++++|..+...++..++
T Consensus       490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~  538 (559)
T KOG1155|consen  490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET  538 (559)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence            9988754221112232222333379999999999999988888776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.18  E-value=3e-09  Score=116.82  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=100.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHcC
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~g  201 (467)
                      ....|...|+++.|.++|+.+..  |+ ...+-.....|.+.|+.++|+++++++...  .|+...  +..+...+...|
T Consensus       366 Li~~y~k~G~~~~A~~vf~~m~~--~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~a~~~~g  440 (697)
T PLN03081        366 LVDLYSKWGRMEDARNVFDRMPR--KN-LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLSACRYSG  440 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCC--CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhcCC
Confidence            34455566667777777776653  22 222333444556667777777777766653  344432  245556666677


Q ss_pred             ChHHHHHHHhccccC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265          202 HPFIAAESLAKIPDI---QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE  278 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~---~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~  278 (467)
                      ..++|..+|+.+.+.   .++...+..++.+|.+.|++++|..+++++-        -.+.. ..|..+...+..+|+.+
T Consensus       441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--------~~p~~-~~~~~Ll~a~~~~g~~~  511 (697)
T PLN03081        441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--------FKPTV-NMWAALLTACRIHKNLE  511 (697)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--------CCCCH-HHHHHHHHHHHHcCCcH
Confidence            777777777666531   2233345566667777777777766665431        01111 13444455566677777


Q ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHHHhcc-CChhHHHHHHh
Q 012265          279 DASHLFEELVKTHGS-IEALVGLVTTSAH-VDVDKAESYEK  317 (467)
Q Consensus       279 ~A~~~le~ll~~~pd-~~ala~Lv~a~~~-~d~~kA~~l~~  317 (467)
                      .|..++++++...|+ ......|+..|+. ...+.|.++.+
T Consensus       512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence            777777777666654 3344455555543 33566655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.17  E-value=1.7e-09  Score=107.80  Aligned_cols=150  Identities=23%  Similarity=0.137  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ...++|..++.++..|+++.|+..+..+++..|+|+....+.+.+++..|+..+|++.+++++..+|+... +.+.+|+.
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-l~~~~a~a  383 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL-LQLNLAQA  383 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-HHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999854 56999999


Q ss_pred             HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      |++.|++.+|+..|...+..++ +|..|..|+..|..+|+..+|...                        .+..+...|
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------------~AE~~~~~G  439 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------------RAEGYALAG  439 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------------HHHHHHhCC
Confidence            9999999999999999875544 889999999999999988755322                        355566788


Q ss_pred             ChhHHHHHHHHHHHhc
Q 012265          276 REEDASHLFEELVKTH  291 (467)
Q Consensus       276 ~~~~A~~~le~ll~~~  291 (467)
                      ++++|+..+..+.+..
T Consensus       440 ~~~~A~~~l~~A~~~~  455 (484)
T COG4783         440 RLEQAIIFLMRASQQV  455 (484)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999888888776

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=6.5e-09  Score=99.16  Aligned_cols=250  Identities=13%  Similarity=0.105  Sum_probs=179.4

Q ss_pred             hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH------HHh--h----hhhc---cCCCChhHHHH
Q 012265           25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV------AVN--N----LVAL---KGPKDVNDSLK   89 (467)
Q Consensus        25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v------a~n--n----l~~l---~~~~~~~~a~~   89 (467)
                      +..+++..+++|.|.|+.++|.+++|+.-|+.+|..+|++....-.      +..  +    +.+.   ++..++.....
T Consensus       100 elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  100 ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            3456788899999999999999999999999999999865433210      000  0    0111   11223333333


Q ss_pred             hhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh
Q 012265           90 KLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG  169 (467)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~  169 (467)
                      .+...                .   +=...++..++-.|...|....|+.-+..+.++..++....+-.+.+++.-|+..
T Consensus       180 ~llEi----------------~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~  240 (504)
T KOG0624|consen  180 HLLEI----------------Q---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE  240 (504)
T ss_pred             HHHhc----------------C---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence            33221                0   0012355667889999999999999999999999999999888888999999999


Q ss_pred             HHHHHHHHHHHhCCCcHH-----------HHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hh----HHHHHHHHHHHc
Q 012265          170 KAEELLGQFAEKLPDKSK-----------IILLARAQVAAAANHPFIAAESLAKIPDIQHM-PA----TVATLVALKERA  233 (467)
Q Consensus       170 ~A~~~l~~~l~~~P~~~~-----------~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~----~~~~l~~ly~~~  233 (467)
                      .++..++++|+.+|++-.           .-.+--+.-.++.++|.+++...++++...+. +.    ....+..+|...
T Consensus       241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d  320 (504)
T KOG0624|consen  241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED  320 (504)
T ss_pred             HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence            999999999999998632           00122344567889999999999999875542 21    234567788889


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGL  300 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L  300 (467)
                      +++.+|+....+++...    +  ++. ..+..-|..|+-...|+.|+.-|+++.+.+++ ..+--++
T Consensus       321 ~~~~eAiqqC~evL~~d----~--~dv-~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  321 EQFGEAIQQCKEVLDID----P--DDV-QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             CCHHHHHHHHHHHHhcC----c--hHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            99999999999998752    1  222 34555689999999999999999999999965 3343343

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.15  E-value=7.8e-10  Score=114.08  Aligned_cols=197  Identities=19%  Similarity=0.194  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCc
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDK  185 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~  185 (467)
                      .+..+.+..|...|+++.|...++..+..        +|.-....-..|.+|...+++.+|+.+|++++...     +++
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34556999999999999999999987765        44333333346788899999999999999998753     222


Q ss_pred             H--HHHHHHHHHHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265          186 S--KIILLARAQVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAAAVLDSAIKWWLNAM  254 (467)
Q Consensus       186 ~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~  254 (467)
                      +  ...+..||.+|..+|++.+|..++++++++.      ..+.   .+..++.++..++++++|+.++.+++..+.+.+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            2  2234788999999999999999999997642      1333   356789999999999999999999999998766


Q ss_pred             cCCc-hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC------C---HHHHHHHHHHhccCC-hhHHHHH
Q 012265          255 TEDN-KLSVIMQEAASFKLRHGREEDASHLFEELVKTHG------S---IEALVGLVTTSAHVD-VDKAESY  315 (467)
Q Consensus       255 ~~~~-~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p------d---~~ala~Lv~a~~~~d-~~kA~~l  315 (467)
                      +.++ .+......+|.+|+.+|++++|.++|++++...-      +   ...+..|..+|.... ...|..+
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l  431 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL  431 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence            6555 7777888899999999999999999999998751      1   244666777775444 3445544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.14  E-value=2.3e-08  Score=102.36  Aligned_cols=266  Identities=18%  Similarity=0.137  Sum_probs=175.2

Q ss_pred             HHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHH
Q 012265            8 FVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDS   87 (467)
Q Consensus         8 A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a   87 (467)
                      ++.|.+.++.- ++.+||...    .|+--|..+.+.+-++=|..+|..+|.-+|.+..+.+-+..-   -..++.....
T Consensus       498 cQAIi~avigi-gvEeed~~~----tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~---ek~hgt~Esl  569 (913)
T KOG0495|consen  498 CQAIIRAVIGI-GVEEEDRKS----TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMF---EKSHGTRESL  569 (913)
T ss_pred             HHHHHHHHHhh-ccccchhHh----HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHH---HHhcCcHHHH
Confidence            34444444432 244555553    345567778888888888888888888888777766533211   0001111111


Q ss_pred             HHhhhhhhhhhhh-----------------HHH----HHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 012265           88 LKKLDRIKEKDMQ-----------------NFQ----LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD  146 (467)
Q Consensus        88 ~~~l~~~~~~~~~-----------------~~~----~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~  146 (467)
                      .-.|.+++...|.                 -.+    +...++.   .+....|++-...+...+.+++.|+.+|.+...
T Consensus       570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~---~pnseeiwlaavKle~en~e~eraR~llakar~  646 (913)
T KOG0495|consen  570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA---NPNSEEIWLAAVKLEFENDELERARDLLAKARS  646 (913)
T ss_pred             HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence            1111111111000                 000    0001100   012345666667777788888888888888776


Q ss_pred             cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHH
Q 012265          147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVAT  225 (467)
Q Consensus       147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~  225 (467)
                      ..|. ...+.=.+.+..-++..++|+++|+++++.+|+.... ++.++||+.+.++.+.|...|..-+..- +.+-+|..
T Consensus       647 ~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll  724 (913)
T KOG0495|consen  647 ISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL  724 (913)
T ss_pred             cCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH-HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence            5543 3333334445566888999999999999999998775 4899999999999999999999887654 36678889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      |+.|-...|+.-.|...|+++.-.   ++    ....+|.+...+-++.|..+.|..++-++|+..|.
T Consensus       725 LakleEk~~~~~rAR~ildrarlk---NP----k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  725 LAKLEEKDGQLVRARSILDRARLK---NP----KNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHhc---CC----CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            999999999999999999998753   22    22346777788889999999999999999998876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.12  E-value=3.2e-09  Score=114.54  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+++.+.+....|.+++|...++.++...|++..+.+..+.++.+.+++++|+..+++++...|++... ++.+|.++
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~-~~~~a~~l  164 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE-ILLEAKSW  164 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH-HHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999876 49999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      ...|++++|+.+|++++...+ .+.++..++.++...|+.++|...|++|+...
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            999999999999999997443 56788889999999999999999999998763

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=1.8e-09  Score=109.42  Aligned_cols=231  Identities=10%  Similarity=0.032  Sum_probs=165.9

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      +-.|-.+.+.|++.+|.-.|+.++..+|.+..++..++.--.....+.++..|+++...+.   |+              
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~--------------  351 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PT--------------  351 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---Cc--------------
Confidence            3468899999999999999999999999999998755322111223446667776665442   22              


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH--HHH-----HHHhcCChhHHHHHHHHHHHhCC--Cc
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL--QAA-----VLVRENKAGKAEELLGQFAEKLP--DK  185 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll--~a~-----l~~~~~~~~~A~~~l~~~l~~~P--~~  185 (467)
                        ...++..+++-|.-.|--.+|.+.+...+..+|.......-  ...     -.........-.++|.++...+|  .+
T Consensus       352 --NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~D  429 (579)
T KOG1125|consen  352 --NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKID  429 (579)
T ss_pred             --cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence              12355566777777776777888888777666543221100  000     00000011122356666777778  45


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                      ++ ++..|+-||.-.|+|+.|+.+|+.++.+++ +--+|..|++.+.-..+.++|+..|++|++..       |.+....
T Consensus       430 pd-vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~yVR~R  501 (579)
T KOG1125|consen  430 PD-VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-------PGYVRVR  501 (579)
T ss_pred             hh-HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCeeeee
Confidence            55 568999999999999999999999999887 55679999999999999999999999999874       3444456


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      ..+|-.++..|.|++|+.+|-.+|...+
T Consensus       502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  502 YNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            7789999999999999999999998763

>PLN03077 Protein ECB2; Provisional

Probab=99.10  E-value=2.2e-08  Score=112.51  Aligned_cols=295  Identities=12%  Similarity=0.000  Sum_probs=168.6

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCC
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPK   82 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~   82 (467)
                      +..|.+++.+.-..+          . ..|.-+-..|.+.|+.++|..+|.++...  .|+......++ ......+...
T Consensus       238 ~~~A~~lf~~m~~~d----------~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll-~a~~~~g~~~  305 (857)
T PLN03077        238 VVSARLVFDRMPRRD----------C-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGDER  305 (857)
T ss_pred             HHHHHHHHhcCCCCC----------c-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChH
Confidence            567888887654322          1 33566667788899999999999998765  34333222222 1111111111


Q ss_pred             ChhHHHHhhhhhhhhhhh---------------HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc
Q 012265           83 DVNDSLKKLDRIKEKDMQ---------------NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM  147 (467)
Q Consensus        83 ~~~~a~~~l~~~~~~~~~---------------~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~  147 (467)
                      ...+.+..+.+. +..++               ....+..+=..+..+ ....+......|...|++++|.++|+.+...
T Consensus       306 ~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~  383 (857)
T PLN03077        306 LGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQD  383 (857)
T ss_pred             HHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            111111111110 00000               000000000111100 0112223344566667777777777766433


Q ss_pred             --CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHH
Q 012265          148 --FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVAT  225 (467)
Q Consensus       148 --~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~  225 (467)
                        .|+......+. ..+.+.|++++|.+++..+.+........+...|...|.+.|++++|..+|+++.+-  +...|..
T Consensus       384 g~~Pd~~t~~~ll-~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~vs~~~  460 (857)
T PLN03077        384 NVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--DVISWTS  460 (857)
T ss_pred             CCCCCceeHHHHH-HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CeeeHHH
Confidence              35554433322 245667777777777777766543322234467888999999999999999988642  3345777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH--------------------------------------------
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS--------------------------------------------  261 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~--------------------------------------------  261 (467)
                      +...|.+.|+.++|+.+|+++...   ..|+...+.                                            
T Consensus       461 mi~~~~~~g~~~eA~~lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~  537 (857)
T PLN03077        461 IIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC  537 (857)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence            888888888888888888876531   111111111                                            


Q ss_pred             -----------------HHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHhccCC-hhHHHHHHhcC
Q 012265          262 -----------------VIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTSAHVD-VDKAESYEKRL  319 (467)
Q Consensus       262 -----------------~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~~~~d-~~kA~~l~~~L  319 (467)
                                       ..|..+...|.++|+.++|..+|+++....  ||..+...++.++++.. .+.|..+...+
T Consensus       538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             CCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence                             124445666788999999999999988754  78777777888887655 68887776544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.10  E-value=3.5e-09  Score=97.54  Aligned_cols=119  Identities=12%  Similarity=0.010  Sum_probs=108.1

Q ss_pred             cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHcCC--hHHHH
Q 012265          131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANH--PFIAA  207 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql-~~~~g~--~~~A~  207 (467)
                      .++.+++...++..+..+|++..+++..|.++...|++++|+..|.+++...|++.... +.+|.+ |...|+  +++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~-~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY-AALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCcHHHH
Confidence            45678888899999999999999999999999999999999999999999999998764 899996 477788  59999


Q ss_pred             HHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          208 ESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       208 ~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      .+|++++..++ ++.+++.++..+...|++++|+..+++++...
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999998876 77889999999999999999999999999863

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.09  E-value=7.6e-09  Score=95.86  Aligned_cols=171  Identities=18%  Similarity=0.096  Sum_probs=141.6

Q ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265          137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      +...+-.....+|++..+ ...+..+...|+-+.+...+.+.+..+|.+...+ ..++...+..|+|.+|+..|.++...
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll-~~~gk~~~~~g~~~~A~~~~rkA~~l  129 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL-AAQGKNQIRNGNFGEAVSVLRKAARL  129 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH-HHHHHHHHHhcchHHHHHHHHHHhcc
Confidence            445555556678998888 7777778889999999999999999999987643 56888999999999999999999988


Q ss_pred             CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CH
Q 012265          217 QH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SI  294 (467)
Q Consensus       217 ~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~  294 (467)
                      .+ ++.+++.++.+|.+.|++++|...|.++++...+    ++   .++.++|..++-.|+++.|..++..+....+ |.
T Consensus       130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~p---~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~  202 (257)
T COG5010         130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN----EP---SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS  202 (257)
T ss_pred             CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC----Cc---hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence            75 8899999999999999999999999999998533    22   2466789999999999999999999997765 56


Q ss_pred             HHHHHHHHHh-ccCChhHHHHHH
Q 012265          295 EALVGLVTTS-AHVDVDKAESYE  316 (467)
Q Consensus       295 ~ala~Lv~a~-~~~d~~kA~~l~  316 (467)
                      .+..+|++.. ...|+..|+...
T Consensus       203 ~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         203 RVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHHHHhhcCChHHHHhhc
Confidence            6667777766 567788887664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=5.2e-09  Score=99.26  Aligned_cols=222  Identities=13%  Similarity=0.046  Sum_probs=181.3

Q ss_pred             chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC
Q 012265            3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK   82 (467)
Q Consensus         3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~   82 (467)
                      -|+..|++..+.+|+...+         ....+-|+.||+.......|+..|.+.+...|.|....+             
T Consensus       237 gm~r~AekqlqssL~q~~~---------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~-------------  294 (478)
T KOG1129|consen  237 GMPRRAEKQLQSSLTQFPH---------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL-------------  294 (478)
T ss_pred             cChhhhHHHHHHHhhcCCc---------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh-------------
Confidence            4889999999999986543         334567899999999999999999999988886643322             


Q ss_pred             ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHH
Q 012265           83 DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVL  162 (467)
Q Consensus        83 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~  162 (467)
                                                              ..+.++-.+++.+.|.+++..+++.+|.++++.--.|.-|
T Consensus       295 ----------------------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  295 ----------------------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             ----------------------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence                                                    2244455567788899999999999999998766666667


Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDG  238 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~  238 (467)
                      .-.++.+-|+..|++++...-.+++. ...++-..+-.++++-++..|++++..--    ..++|..|+.+....||+..
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speL-f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl  413 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPEL-FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL  413 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHH-HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence            78999999999999999987777664 47788888889999999999999985322    45689999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      |...|+-++..       +++....+..+|-+..+.|+.++|..+|..+-...|+.
T Consensus       414 A~rcfrlaL~~-------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  414 AKRCFRLALTS-------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHHHHHHHhcc-------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            99999988864       34445678888999999999999999999998888873

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-08  Score=99.86  Aligned_cols=166  Identities=17%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH-----------
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII-----------  189 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~-----------  189 (467)
                      .+-.+.++...|.++.|....-.++++++.+..+.++.+.++.-..+.+.|+..+++.+...|+....-           
T Consensus       172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  172 KLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence            345677888899999999999999999999999999999999999999999999999999999864421           


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                      .-.-|.-..+.|+|..|.++|..++.+++     +..++...+.+..+.|+..+|+.-.+.|+..       ++.+...+
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D~syikal  324 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------DSSYIKAL  324 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------CHHHHHHH
Confidence            12335567789999999999999998775     2234667788999999999999999999875       23444455


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ...|.+++..+++++|++.|+++++...+
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            55699999999999999999999998754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.02  E-value=7.3e-09  Score=88.97  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=98.4

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..++.++..+|++..+.+..+..++..|++++|+..++.++..+|++.... ..+|++|...|++++|+.+|++++...+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW-LGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            457778888999988888888889999999999999999999999987754 8899999999999999999999987765


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                       ++.++..++.+|...|++++|+..|+.++...
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence             67788889999999999999999999998864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.01  E-value=6.1e-09  Score=90.90  Aligned_cols=107  Identities=14%  Similarity=0.053  Sum_probs=73.7

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..+++++..+|++   +...+.++...|++++|+..|+.++..+|.+.... ..+|.++...|++++|+..|++++.+++
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH-IALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3455566666664   23345666677777777777777777777776543 6777777777777777777777776654


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                       ++..+..++.++...|++++|+..|+.++..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             5666777777777777777777777777764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.01  E-value=1.9e-07  Score=89.37  Aligned_cols=247  Identities=15%  Similarity=0.134  Sum_probs=178.5

Q ss_pred             CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265           21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ  100 (467)
Q Consensus        21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~  100 (467)
                      .+++|++.+     +.++--++..|.+..|+..|..++..+|++-.+++--+.-++++++..-...-+.++..+      
T Consensus        33 ~~~advekh-----lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------  101 (504)
T KOG0624|consen   33 ASPADVEKH-----LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------  101 (504)
T ss_pred             CCHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------
Confidence            356777654     457888999999999999999999999988777775556666676543332223333221      


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH-----H----------HHHHHHHhc
Q 012265          101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL-----L----------LQAAVLVRE  165 (467)
Q Consensus       101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~-----l----------l~a~l~~~~  165 (467)
                                |   +....+...++.++|.+|++++|..-|+.++..+|.+....     +          -+...++-.
T Consensus       102 ----------K---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~  168 (504)
T KOG0624|consen  102 ----------K---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS  168 (504)
T ss_pred             ----------C---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence                      2   12335667889999999999999999999999998653211     1          111223467


Q ss_pred             CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265          166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLD  244 (467)
Q Consensus       166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~  244 (467)
                      |+...|+..+.++++..|=+... +...|..|+..|....|+.-++.+..+.. +...++.+..|+...|+.+.++..++
T Consensus       169 GD~~~ai~~i~~llEi~~Wda~l-~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  169 GDCQNAIEMITHLLEIQPWDASL-RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             CchhhHHHHHHHHHhcCcchhHH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            89999999999999999987764 57889999999999999999999876653 56677788999999999999999999


Q ss_pred             HHHHHHHHhccCCchH------HHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          245 SAIKWWLNAMTEDNKL------SVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       245 ~al~~~~~~~~~~~~~------~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +.+.+.+.+...-+.+      ...+. -+.-..+.+++.++++..+++++.+|.
T Consensus       248 ECLKldpdHK~Cf~~YKklkKv~K~le-s~e~~ie~~~~t~cle~ge~vlk~ep~  301 (504)
T KOG0624|consen  248 ECLKLDPDHKLCFPFYKKLKKVVKSLE-SAEQAIEEKHWTECLEAGEKVLKNEPE  301 (504)
T ss_pred             HHHccCcchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence            8886532211110111      11121 244456678888888888888887775

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.00  E-value=4.2e-09  Score=91.94  Aligned_cols=109  Identities=9%  Similarity=-0.070  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .++.+.++...|++++|...|..++..+|.+..++...|.++...|++++|+..|++++..+|++.... +.+|.++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~-~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV-YQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHc
Confidence            557899999999999999999999999999999999999999999999999999999999999998764 9999999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATVATLVALK  230 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly  230 (467)
                      |++++|+..|+.++.+.+ ++..+..++.+.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999999998765 566665544433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=6.1e-08  Score=101.14  Aligned_cols=256  Identities=20%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccC--CCChhHHHHhhhhhhhhhhhHHHHH----
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKG--PKDVNDSLKKLDRIKEKDMQNFQLA----  105 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~--~~~~~~a~~~l~~~~~~~~~~~~~~----  105 (467)
                      .+.-..|.++..+|++++|..+|..+|..+|+|...+......+....+  ..+.......+..+....|.. ...    
T Consensus        39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s-~~~~rl~  117 (517)
T PF12569_consen   39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS-DAPRRLP  117 (517)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc-cchhHhh
Confidence            5667899999999999999999999999999988777533222210101  111111111222211111100 000    


Q ss_pred             ------HHhhcCCCHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcccc------C---------CCCc--hHH
Q 012265          106 ------RVLDLRLSPKQ-------REAIYANRVLLLLHANKMDQARELVAALPDM------F---------PDSV--MPL  155 (467)
Q Consensus       106 ------~~l~~kL~~~q-------~~~l~~n~all~l~~~~~~~A~~~~~~l~~~------~---------P~~~--~~~  155 (467)
                            +.+..++..+=       -..+..|.--+|-...+.+-...++......      +         |...  ..+
T Consensus       118 L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~  197 (517)
T PF12569_consen  118 LDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL  197 (517)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence                  00000000000       0011122222222223333223333332211      1         1111  234


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      ++.|+.|...|++++|+..+.++++..|..++. +++.|.||-..|++.+|..+++.+-.++. +--+-...+..+++.|
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el-y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL-YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            678888889999999999999999999999875 59999999999999999999999987775 3344556788888999


Q ss_pred             CHHHHHHHHHHHHHHHHHh-cc-C---CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          235 DIDGAAAVLDSAIKWWLNA-MT-E---DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       235 ~~~~A~~~l~~al~~~~~~-~~-~---~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      ++++|...+..-..   .. .+ .   +-+..++..+.|..|.+.|++..|+..|..+.+.+.
T Consensus       277 ~~e~A~~~~~~Ftr---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  277 RIEEAEKTASLFTR---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             CHHHHHHHHHhhcC---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999887764221   11 00 0   113455667789999999999999999999998763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN02789 farnesyltranstransferase

Probab=98.99  E-value=1.2e-07  Score=93.49  Aligned_cols=193  Identities=13%  Similarity=0.014  Sum_probs=141.5

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           37 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        37 lA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      +--++...++.++|+.++.+++..+|++..+...-...+..++  .+..+++..+.++...+++                
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npk----------------  104 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPK----------------  104 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCc----------------
Confidence            3445788999999999999999999998887764433333332  1344555555443332222                


Q ss_pred             HHHHHHHHHHHHHHcCCH--HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKM--DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~--~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      .-.++.+++.++...+..  +.+...++.++..+|.+..++...+-++...|++++|+..+.++++.+|.+..++ ...+
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW-~~R~  183 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW-NQRY  183 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH-HHHH
Confidence            123577777777777763  7788999999999999999999999999999999999999999999999987764 6777


Q ss_pred             HHHHHc---CCh----HHHHHHHhccccCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012265          195 QVAAAA---NHP----FIAAESLAKIPDIQH-MPATVATLVALKER----AGDIDGAAAVLDSAIK  248 (467)
Q Consensus       195 ql~~~~---g~~----~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~  248 (467)
                      .++...   |.+    ++++....+++...+ +...+..+..++..    .++..+|+..+.+++.
T Consensus       184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence            776654   333    467777778877665 66778788888877    3455678887777664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.96  E-value=6.1e-08  Score=101.21  Aligned_cols=237  Identities=16%  Similarity=0.104  Sum_probs=173.3

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC--
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP--   81 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~--   81 (467)
                      -|..|.+.|++.|.-..  .+     -++.|.-+|.|+..++++.+|+.+.+.++...+.|......-..--..+++.  
T Consensus       493 ~l~sAl~~~~eaL~l~~--~~-----~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~  565 (799)
T KOG4162|consen  493 QLTSALDYAREALALNR--GD-----SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE  565 (799)
T ss_pred             hHHHHHHHHHHHHHhcC--Cc-----cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence            46788899999998521  11     2366788999999999999999999999998887543332110000001111  


Q ss_pred             -----------------------------------------CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC-------
Q 012265           82 -----------------------------------------KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS-------  113 (467)
Q Consensus        82 -----------------------------------------~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~-------  113 (467)
                                                               .+.....+++..+..... +.   ...+.+|.       
T Consensus       566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~-~~---~~se~~Lp~s~~~~~  641 (799)
T KOG4162|consen  566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL-KS---AGSELKLPSSTVLPG  641 (799)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-hh---cccccccCcccccCC
Confidence                                                     111111222211111000 00   00001111       


Q ss_pred             ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          114 ----PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       114 ----~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                          ..-...++...+.+++..+..++|..++.++.+.+|-....+.+.|.++...|++.+|...|..++..+|+++...
T Consensus       642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~  721 (799)
T KOG4162|consen  642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM  721 (799)
T ss_pred             CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence                0001235667788899999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHcCChHHHHH--HHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAE--SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~--~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                       ..+|.++++.|+..-|..  .|..++.+++ ++.+|+.++.++..+|+.+.|..+|..+++....
T Consensus       722 -~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  722 -TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             -HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence             899999999999988888  9999999887 8999999999999999999999999999987543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.94  E-value=1.2e-08  Score=87.52  Aligned_cols=116  Identities=14%  Similarity=-0.001  Sum_probs=98.6

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          173 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       173 ~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ..|++++..+|++... .+.+|..++..|++++|...|+.++...+ ++.++..++.+|..+|++++|+..|++++... 
T Consensus         4 ~~~~~~l~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQ-IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hhHHHHHcCChhhHHH-HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            4678899999998765 48999999999999999999999988665 77888899999999999999999999988752 


Q ss_pred             HhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH
Q 012265          252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA  296 (467)
Q Consensus       252 ~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a  296 (467)
                         +.+   ...+..+|.++...|++++|...|+.+++.+|+...
T Consensus        82 ---p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        82 ---PDD---PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ---CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence               212   234556899999999999999999999999987533

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.94  E-value=5.9e-08  Score=89.81  Aligned_cols=173  Identities=17%  Similarity=0.146  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLA  192 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~  192 (467)
                      ....|..+..++..|++++|+..|+.+...+|.+..   +.+..|..+.+.|++.+|+..+++++..+|++..  .+.+.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            346789999999999999999999999999999765   5778888899999999999999999999998543  34577


Q ss_pred             HHHHHHHcC-----------ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          193 RAQVAAAAN-----------HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       193 Laql~~~~g-----------~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      +|..+..+.           ...+|+..|+.++..-+             ...-..+|...+..+....-.         
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-------------~S~y~~~A~~~l~~l~~~la~---------  142 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-------------NSEYAEEAKKRLAELRNRLAE---------  142 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-------------TSTTHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-------------CchHHHHHHHHHHHHHHHHHH---------
Confidence            777765542           12344444444443211             112223333333322221100         


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCChhHHH
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVDVDKAE  313 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d~~kA~  313 (467)
                       --+.+|.+|++.|.+..|+..|+.+++.+|+    .+++..++.+|-.++...+.
T Consensus       143 -~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  143 -HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             -HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             -HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence             1122699999999999999999999999987    47889999999777754443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.92  E-value=1.3e-06  Score=85.41  Aligned_cols=257  Identities=19%  Similarity=0.165  Sum_probs=155.7

Q ss_pred             HHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHH
Q 012265           38 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR  117 (467)
Q Consensus        38 A~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~  117 (467)
                      |-+-.--|++..|+.+..+.-+..+ .+.+.++.+.-  +.++-++.+.+=+.+.++.+..++               +.
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~--AA~qrgd~~~an~yL~eaae~~~~---------------~~  152 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAE--AAQQRGDEDRANRYLAEAAELAGD---------------DT  152 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHH--HHHhcccHHHHHHHHHHHhccCCC---------------ch
Confidence            5566678999999998888665433 33333322111  223334444444455444332111               12


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHHHHHH-HHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILL-ARAQ  195 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~~~~l-~Laq  195 (467)
                      .......+.+.+..|+++.|+..+..+....|.++.+..+...+|+..|.|.+...++.++-+..-- ++....| ..+.
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~  232 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW  232 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence            2355677888899999999999999999999999999889899999999999988888776654311 1111111 0000


Q ss_pred             --HHHHcCChHHHHH---HHhcccc-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Q 012265          196 --VAAAANHPFIAAE---SLAKIPD-IQHMPATVATLVALKERAGDIDGAAAVLDSAI----------------------  247 (467)
Q Consensus       196 --l~~~~g~~~~A~~---~L~~~~~-~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al----------------------  247 (467)
                        ++-+.++-+.+..   +.+.+.. ...+|.+...++.-+.+.|++++|...+..++                      
T Consensus       233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~  312 (400)
T COG3071         233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP  312 (400)
T ss_pred             HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence              1111111111111   2222221 22345555555555555555555555555333                      


Q ss_pred             -----HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CChhHHHHH
Q 012265          248 -----KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAH-VDVDKAESY  315 (467)
Q Consensus       248 -----~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-~d~~kA~~l  315 (467)
                           ++|-..-++++   .++..+|.++++++.+.+|...|+.+++..|+....+-+..++.. .++..|++.
T Consensus       313 l~k~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~  383 (400)
T COG3071         313 LIKAAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV  383 (400)
T ss_pred             HHHHHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence                 23322233344   357778999999999999999999999988887777777777754 456777554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.91  E-value=5.9e-08  Score=102.87  Aligned_cols=184  Identities=13%  Similarity=0.140  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .+..|..++..|+++.|.+++.++++++|.+..++..+|.+|.+.|+..+|....--+...+|.+.+.+ ..++.+..++
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W-~~ladls~~~  220 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW-KRLADLSEQL  220 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHhc
Confidence            455677777779999999999999999999999999999999999999999998888888999998765 8999999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHCCChh
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSVIMQEAASFKLRHGREE  278 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~ll~~la~~~l~~g~~~  278 (467)
                      |++++|+-+|.+++...+ +..++.....+|.++|+...|...|.+++.+-+   +.+ ..+....+..+..+..+++.+
T Consensus       221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---PVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999998765 566777889999999999999999999987632   111 123334444677788888889


Q ss_pred             HHHHHHHHHHHhc------CCHHHHHHHHHHhccCC
Q 012265          279 DASHLFEELVKTH------GSIEALVGLVTTSAHVD  308 (467)
Q Consensus       279 ~A~~~le~ll~~~------pd~~ala~Lv~a~~~~d  308 (467)
                      .|+..++..+...      ||...++.|.+.+...|
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d  333 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD  333 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence            9999999999843      34577788777765555

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.91  E-value=3.3e-07  Score=89.55  Aligned_cols=190  Identities=21%  Similarity=0.258  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+.|.+++-+..|+|.+|++.+.+..+..+.....+++-|....+.|+.+.|-.++.++.+.-+++.-.+.++.++++
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            44678899999999999999999998766555555556666666788999999999999999886666555668999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI-----------------------------  247 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al-----------------------------  247 (467)
                      +.+|++..|...+.++.+..+ +|.++.....+|.+.|++.+...++.+..                             
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999998775 77888888999999999988888777322                             


Q ss_pred             ------HHHHHhcc---CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhH
Q 012265          248 ------KWWLNAMT---EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDK  311 (467)
Q Consensus       248 ------~~~~~~~~---~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~k  311 (467)
                            .||++.+.   .++.   +...++.-+.+.|++++|.++.++.++..-|.. ++.++-+.-..|+++
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~  312 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEP  312 (400)
T ss_pred             cchHHHHHHHhccHHhhcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchH
Confidence                  46765332   1233   334457778999999999999999999875544 667776666666544

>PLN02789 farnesyltranstransferase

Probab=98.89  E-value=2.3e-07  Score=91.61  Aligned_cols=180  Identities=11%  Similarity=0.006  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCCh--hHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKA--GKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       119 ~l~~n~all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~--~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      .++.+++.++...| .++++...+++++..+|++..++...+.++...+..  ++++..+.++++.+|.+..++ ...+.
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW-~~R~w  150 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW-SHRQW  150 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH-HHHHH
Confidence            45667777777777 589999999999999999999988888777777764  678999999999999998765 88899


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA---GDI----DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA  267 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~---g~~----~~A~~~l~~al~~~~~~~~~~~~~~~ll~~l  267 (467)
                      ++...|++++|+..+.++++.++ +..++...+.++...   |.+    ++++.+..+++...       +...++|..+
T Consensus       151 ~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-------P~N~SaW~Yl  223 (320)
T PLN02789        151 VLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-------PRNESPWRYL  223 (320)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-------CCCcCHHHHH
Confidence            99999999999999999998765 566777777776665   333    46677777777652       2222356666


Q ss_pred             HHHHHH----CCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265          268 ASFKLR----HGREEDASHLFEELVKTHGS-IEALVGLVTTSAH  306 (467)
Q Consensus       268 a~~~l~----~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~  306 (467)
                      +.++..    .+...+|...+.+++...|. ..++.-|+-.|+.
T Consensus       224 ~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        224 RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            777766    35567899999998887754 5566666655543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.86  E-value=1e-07  Score=88.48  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=137.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      ++.+..+...|+-+........+...+|.+......++..++..|++.+|+..++++....|++...+ ..+|-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~-~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW-NLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh-hHHHHHHHHcc
Confidence            78888999999999999999998888998877766688888999999999999999999999998864 89999999999


Q ss_pred             ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHH
Q 012265          202 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA  280 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A  280 (467)
                      ++++|...|.+++++.. .|.++..++.+|.-.|+++.|..+|..+...    ++.+.   .+...++.+.-..|++.+|
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~---~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADS---RVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCch---HHHHHHHHHHhhcCChHHH
Confidence            99999999999999875 7888999999999999999999999988652    22222   2455678888889999999


Q ss_pred             HHHHHHHHH
Q 012265          281 SHLFEELVK  289 (467)
Q Consensus       281 ~~~le~ll~  289 (467)
                      .++-.+-+.
T Consensus       222 ~~i~~~e~~  230 (257)
T COG5010         222 EDIAVQELL  230 (257)
T ss_pred             Hhhcccccc
Confidence            988766554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.86  E-value=1.2e-07  Score=82.93  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh----hHHHHHHHHHHHcCCH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQHMP----ATVATLVALKERAGDI  236 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p----~~~~~l~~ly~~~g~~  236 (467)
                      ...++...+...++.++..+|+..  ....|.+|.++..+|++++|+..|+.+++...++    -+...|+.++..+|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            358889999999999999999972  2345889999999999999999999999754433    3456789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265          237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll  288 (467)
                      ++|+..|+....        .......+...|.+++..|++++|...|++++
T Consensus       102 d~Al~~L~~~~~--------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQIPD--------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHhccC--------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999976321        11122234447999999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=1.3e-07  Score=92.16  Aligned_cols=169  Identities=19%  Similarity=0.192  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      +..-.|.+++..|++++|.+.+...     ++.+...+.+.++++.++++.|.+.++.+-+.+.+.. ...++.|.+.+.
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~-l~qLa~awv~l~  177 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI-LTQLAEAWVNLA  177 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHH
Confidence            4444566666777777776666543     4556666777777777777777777777665554433 334555555555


Q ss_pred             cC--ChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265          200 AN--HPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR  276 (467)
Q Consensus       200 ~g--~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~  276 (467)
                      .|  ++.+|.-+|+.+.+. ..++.+...++.+++++|++++|...|.+++...       +.....+..++.+....|+
T Consensus       178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-------~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-------PNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHTT-
T ss_pred             hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHhCC
Confidence            55  477777777776653 2356666667777777777777777777776421       2223345556666666776


Q ss_pred             h-hHHHHHHHHHHHhcCCHHHHHHHH
Q 012265          277 E-EDASHLFEELVKTHGSIEALVGLV  301 (467)
Q Consensus       277 ~-~~A~~~le~ll~~~pd~~ala~Lv  301 (467)
                      . +.+.+++.++...+|+...+..+.
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             ChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            6 445566666666666644444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=2.9e-07  Score=90.75  Aligned_cols=199  Identities=12%  Similarity=0.063  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ...+-.+.+....|++++|.+.|+++|..+.+-...++-++.   ......+..+++.-+..+          +..|   
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl---t~e~~~~ldeald~f~kl----------h~il---  554 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL---TAEALGNLDEALDCFLKL----------HAIL---  554 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc---cHHHhcCHHHHHHHHHHH----------HHHH---
Confidence            445667888889999999999999999865443333331111   111223455555555432          1111   


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                         .....+.+..+.+|-...+..+|++++-++...-|.++..+--++.+|-++|+..+|.+++-.-..-+|-+.+.+ -
T Consensus       555 ---~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i-e  630 (840)
T KOG2003|consen  555 ---LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI-E  630 (840)
T ss_pred             ---HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH-H
Confidence               123346677888888889999999999999999999998877889999999999999999888888899998876 8


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      +|+..|+...=+++|+..|+++.-++++.. +...+++++.+.|++..|..+|+..-..+
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            899999999999999999999976666443 34556889999999999999998876554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.85  E-value=3.3e-07  Score=87.12  Aligned_cols=177  Identities=14%  Similarity=0.080  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH---HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---LLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARA  194 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~---ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~La  194 (467)
                      ..|..+..++..|++++|++.|+.+...+|++..+.   +..|.++.+.+++++|+..++++++.+|+++.  .+.+.+|
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            467889999999999999999999999999987654   67788899999999999999999999998643  3446666


Q ss_pred             HHHHHcC---------------C---hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265          195 QVAAAAN---------------H---PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE  256 (467)
Q Consensus       195 ql~~~~g---------------~---~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~  256 (467)
                      ..+...+               +   ..+|+..|+.+++.-++...             ..+|...+..+......    
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~la~----  176 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDRLAK----  176 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHHHHH----
Confidence            5543332               1   23455555555542221111             12222222221111100    


Q ss_pred             CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCC-hhHHHHHHhcC
Q 012265          257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVD-VDKAESYEKRL  319 (467)
Q Consensus       257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d-~~kA~~l~~~L  319 (467)
                            --+.+|.+|++.|.+..|+.-|+.++...|+    .+++..++.+|...+ .+.|....+.|
T Consensus       177 ------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 ------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             ------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                  0123699999999999999999999999886    588999999996554 57776665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=3.1e-07  Score=84.73  Aligned_cols=128  Identities=19%  Similarity=0.146  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ..-.++++-.+|.+++|.+.++.++..+|.+...+.-+.+++-.+|+..+|++.+..+++.++.|.+++ .-|+.+|+..
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW-~eLaeiY~~~  167 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAW-HELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhH
Confidence            345678888899999999999999999999988877777788889999999999999999999999876 7899999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAG---DIDGAAAVLDSAIKW  249 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~  249 (467)
                      |+|++|+-+|+.++=+.+ +|.++..++.++.-+|   ++..|..+|.+++..
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            999999999999986654 8888888887766555   557788888888875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.1e-06  Score=84.23  Aligned_cols=170  Identities=14%  Similarity=0.110  Sum_probs=136.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      .+.|+-.-|.+++-..+...+....-.....++..+.+++..+++..|+.+-++.+..+|.+...+ +..|.+++..|+.
T Consensus       272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~al-ilKG~lL~~~~R~  350 (564)
T KOG1174|consen  272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEAL-ILKGRLLIALERH  350 (564)
T ss_pred             HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHH-HhccHHHHhccch
Confidence            477777888888888888887766656666788888899999999999999999999999998865 8889999999999


Q ss_pred             HHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------HHHHHh
Q 012265          204 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI-----------------------------KWWLNA  253 (467)
Q Consensus       204 ~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al-----------------------------~~~~~~  253 (467)
                      ++|+-.|+.+..+.+ ....+.-|+..|+..|++.+|...-+.+.                             .++...
T Consensus       351 ~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~  430 (564)
T KOG1174|consen  351 TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS  430 (564)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence            999999999988764 56677788899999999988887666433                             233222


Q ss_pred             ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ..-.|.+..+...+|.++..-|.+++++.++++.+..+||.
T Consensus       431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~  471 (564)
T KOG1174|consen  431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV  471 (564)
T ss_pred             hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence            22234444455557888899999999999999999988874

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.81  E-value=3.3e-07  Score=100.15  Aligned_cols=193  Identities=13%  Similarity=0.112  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH-------------
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS-------------  186 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~-------------  186 (467)
                      ++.....++...|++++|...++..++.+|+....+++.|.++.+.+++.+|.-+  .++...+.+.             
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~  110 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL  110 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence            3444566777899999999999999999999999999999999888888877544  5555554443             


Q ss_pred             ------HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 012265          187 ------KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW---------  250 (467)
Q Consensus       187 ------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~---------  250 (467)
                            .+ ++.||.+|-+.|++++|...++++++.++ ++.++..++..|... +.++|+.++.+|+..+         
T Consensus       111 ~~~~~k~A-l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~  188 (906)
T PRK14720        111 LYGENKLA-LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI  188 (906)
T ss_pred             hhhhhhHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence                  54 48999999999999999999999999886 888999999999999 9999999999888543         


Q ss_pred             ----HHh---ccCCchH-----HHHHHHHH------------HHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265          251 ----LNA---MTEDNKL-----SVIMQEAA------------SFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       251 ----~~~---~~~~~~~-----~~ll~~la------------~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~  305 (467)
                          ..-   .+.+-..     ..+....+            ..|-..+++++++.+|+.+++.+|. .-+...++.||.
T Consensus       189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                221   1111111     01111122            5566678999999999999999964 677888988883


Q ss_pred             --cCChhHHHHHH
Q 012265          306 --HVDVDKAESYE  316 (467)
Q Consensus       306 --~~d~~kA~~l~  316 (467)
                        +.+.+..+.++
T Consensus       269 ~kY~~~~~~ee~l  281 (906)
T PRK14720        269 EKYKDHSLLEDYL  281 (906)
T ss_pred             HHccCcchHHHHH
Confidence              33434444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.4e-06  Score=86.35  Aligned_cols=246  Identities=12%  Similarity=0.001  Sum_probs=170.4

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC----CChhHHHHhhhhhhhhhhhHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP----KDVNDSLKKLDRIKEKDMQNF  102 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~----~~~~~a~~~l~~~~~~~~~~~  102 (467)
                      ..+.+.-...+|.......+++.|++.|..++.++ .+...+.....-++-+...    ...+++...-....       
T Consensus       220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-------  291 (539)
T KOG0548|consen  220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-------  291 (539)
T ss_pred             HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-------
Confidence            34455667788999999999999999999999998 6666555332222222111    01122222111110       


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                           .+.++    ........+-.+...+.++.|+..+.+.+..+-.        ..++-+.+..+++++......-.+
T Consensus       292 -----ad~kl----Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~  354 (539)
T KOG0548|consen  292 -----ADYKL----IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN  354 (539)
T ss_pred             -----HHHHH----HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence                 00011    0011111344666678899999999986654432        234455667778888888877788


Q ss_pred             CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      |+-.... -.-|.-++..|+|..|+..|.+++..++ ++.+++..+.+|...|.+..|+.-.+.+++..       +.+.
T Consensus       355 pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-------p~~~  426 (539)
T KOG0548|consen  355 PEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-------PNFI  426 (539)
T ss_pred             hhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------chHH
Confidence            8765544 4558999999999999999999987766 66788999999999999999999999988752       3333


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~  305 (467)
                      ..+..-|.++..+.+|+.|.+.|+++++.+|+ .+++-++..|+.
T Consensus       427 kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  427 KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            34444588898999999999999999999986 566667777765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.75  E-value=3.9e-06  Score=79.81  Aligned_cols=184  Identities=9%  Similarity=0.027  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      .+..|.-+...|++++|+..|+.++...|......                                             
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~---------------------------------------------   69 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ---------------------------------------------   69 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH---------------------------------------------
Confidence            56789999999999999999999998877432110                                             


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHhcC------------------ChhHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVREN------------------KAGKAE  172 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~~~------------------~~~~A~  172 (467)
                           .+.++.+.+++..+++++|+..++++++.+|+++.+   .++.|..+...+                  ...+|+
T Consensus        70 -----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~  144 (243)
T PRK10866         70 -----QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF  144 (243)
T ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence                 134567888999999999999999999999998653   455554432221                  134788


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          173 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       173 ~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      ..|+.+++.+|++.-.   ..|+-.+..=+..-|              .--..++..|.+.|.+..|+.-++.++..|++
T Consensus       145 ~~~~~li~~yP~S~ya---~~A~~rl~~l~~~la--------------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~  207 (243)
T PRK10866        145 RDFSKLVRGYPNSQYT---TDATKRLVFLKDRLA--------------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD  207 (243)
T ss_pred             HHHHHHHHHCcCChhH---HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence            9999999999987431   222222110000000              11225688899999999999999999998754


Q ss_pred             hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265          253 AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       253 ~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll  288 (467)
                          .+....++..++..+...|..++|..+...+.
T Consensus       208 ----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        208 ----TQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence                34445566668999999999999988776543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.74  E-value=7.8e-07  Score=91.53  Aligned_cols=243  Identities=16%  Similarity=0.090  Sum_probs=174.4

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      +-.+.-..-.+.|...+...+.||+..|.+..++++-+.++.++++   ..+++..+......+         +      
T Consensus        11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~---~~ea~~~vr~glr~d---------~------   72 (700)
T KOG1156|consen   11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK---KEEAYELVRLGLRND---------L------   72 (700)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc---hHHHHHHHHHHhccC---------c------
Confidence            3344455678899999999999999999999999988777777654   445555554321111         1      


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                       -..+.+--.++++-...+|++|++++..++...|+|..++.=.+.+.++.++++-....=.+++...|..-..+ +.+|
T Consensus        73 -~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w-~~~A  150 (700)
T KOG1156|consen   73 -KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW-IGFA  150 (700)
T ss_pred             -ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH-HHHH
Confidence             11234445677777788899999999999999999999887777778889999988888788899999876554 7888


Q ss_pred             HHHHHcCChHHHHHHHhccccCC---CChhH------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQ---HMPAT------VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~---~~p~~------~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      ..+...|++..|..+++......   .++..      ...-..++...|..+.|.+.+..--...      -+.+. ...
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i------~Dkla-~~e  223 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI------VDKLA-FEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH------HHHHH-Hhh
Confidence            88888999999999999886432   22222      2233456666777777766665422111      12222 233


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS  304 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~  304 (467)
                      .-|.+++..|++++|..+|..++..+||. +..-++..++
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence            35899999999999999999999999984 3444454454

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=1.9e-06  Score=86.34  Aligned_cols=149  Identities=18%  Similarity=0.096  Sum_probs=125.0

Q ss_pred             CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHH
Q 012265          149 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLV  227 (467)
Q Consensus       149 P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~  227 (467)
                      |....+.+-.|..++..|++++|+..|..++..+|+|+-+. .+.++|++..|+..+|++.+++++...+ .+-++..++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~-~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYL-ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            66667777788888999999999999999999999998654 7889999999999999999999998876 477788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~  305 (467)
                      ..|++.|++.+|+.+|+..+..    .|+++.   .|..+|..|-.+|+..+|...+-+.+....+ ..++..+..+..
T Consensus       382 ~all~~g~~~eai~~L~~~~~~----~p~dp~---~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFN----DPEDPN---GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhc----CCCCch---HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999999999999987753    233333   4667899999999999999999999988866 345555555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.68  E-value=1e-05  Score=91.71  Aligned_cols=172  Identities=15%  Similarity=0.019  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH-HHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS-FAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~-~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      +...+++++..+|++++|...++.++...+.+... ..++.+++.. ....++...+...+.+.....       .... 
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~-------~~~g-  525 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA-------RQHD-  525 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------hhhc-
Confidence            34558999999999999999999998854533221 2222222211 111234445554444332110       0000 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-----CCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-----PDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-----P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                        ..........+.+.+++..|++++|...+++.+...     +...   ......+.++...|++++|...+.+++...
T Consensus       526 --~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        526 --VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             --chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence              001112345677888888888888888877655431     1111   123355667777788888888888876642


Q ss_pred             C----CcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          183 P----DKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       183 P----~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      .    .........++.++...|++++|...+..+.
T Consensus       604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~  639 (903)
T PRK04841        604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE  639 (903)
T ss_pred             hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2    1122233457888888888888888877764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.67  E-value=2.4e-07  Score=80.53  Aligned_cols=106  Identities=13%  Similarity=0.008  Sum_probs=85.8

Q ss_pred             ccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265          144 LPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA  221 (467)
Q Consensus       144 l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~  221 (467)
                      +.... ++......-.|..+...|++++|+++++-+...+|.+...+ +.||-++-..|+|.+|+..|..+..+++ +|.
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~-~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYW-FRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            34445 55556666677777888899999888888888888888765 8888888888999999999988887765 777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      ....++.+|+..|+.+.|+..|+.++.|-
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            78888888889999999999998888764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.66  E-value=2.7e-07  Score=92.90  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=79.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      +..+..++..|+++.|+..+.+++..+|++..+++..|.++...|++++|+..+++++..+|++... ++.+|.+|...|
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-~~~lg~~~~~lg   84 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-YLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHhC
Confidence            3456777778888888888888888888888887788888888888888888888888888887664 477888888888


Q ss_pred             ChHHHHHHHhccccCCC-ChhHHHHH
Q 012265          202 HPFIAAESLAKIPDIQH-MPATVATL  226 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~-~p~~~~~l  226 (467)
                      +|++|+..|++++.+.+ ++.+...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            88888888888877654 45444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.65  E-value=3.1e-07  Score=76.50  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARA  194 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~La  194 (467)
                      ++++.+..++..|++++|...++.++..+|++.   .+.+..+.++...|++++|+..|+.++..+|++.  ..+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            345666666666666666666666666666542   3455566666666666666666666666665531  11235566


Q ss_pred             HHHHHcCChHHHHHHHhccccC
Q 012265          195 QVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      .++...|++++|+..|+++++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            6666666666666666666544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=4.8e-06  Score=84.26  Aligned_cols=251  Identities=12%  Similarity=0.050  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      ....+...+..|+++.|+..|.+++.++|.+..++.--++.+..++   .+.++++...+.+               +|.
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~---~~~~al~da~k~~---------------~l~   66 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLG---SYEKALKDATKTR---------------RLN   66 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHh---hHHHHHHHHHHHH---------------hcC
Confidence            3567888999999999999999999999987665542222332332   2333333322211               111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH------------------------------------
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL------------------------------------  157 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll------------------------------------  157 (467)
                       ++|.-.+...+..++..|+|++|+..|.+-++.+|++..+.--                                    
T Consensus        67 -p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~  145 (539)
T KOG0548|consen   67 -PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSD  145 (539)
T ss_pred             -CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhcc
Confidence             3566677777778888888888887777666555554322110                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 012265          158 --------------------------------------------------------------------------------  157 (467)
Q Consensus       158 --------------------------------------------------------------------------------  157 (467)
                                                                                                      
T Consensus       146 ~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~  225 (539)
T KOG0548|consen  146 PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH  225 (539)
T ss_pred             HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence                                                                                            


Q ss_pred             ----HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----Ch----hHHHH
Q 012265          158 ----QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MP----ATVAT  225 (467)
Q Consensus       158 ----~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p----~~~~~  225 (467)
                          .+....+..++..|++.+..+++.+ .+.... ...+.+|+..|.+.+++......++...    ..    .....
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~-~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYL-NNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHH-HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence                1123345566667777777777777 655543 6778888888888888777777664321    11    11234


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------------ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNA-------------------MTEDNKLSVIMQEAASFKLRHGREEDASHLFEE  286 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~-------------------~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~  286 (467)
                      ++..|..+++++.|+.+|.+++..+...                   .--++....-.+..|..++..|+|..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            5668888899999999999888654320                   000122333455568899999999999999999


Q ss_pred             HHHhcCC-HHHHHHHHHHhc
Q 012265          287 LVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       287 ll~~~pd-~~ala~Lv~a~~  305 (467)
                      ++..+|+ .....+..+||.
T Consensus       384 AIkr~P~Da~lYsNRAac~~  403 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYL  403 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHH
Confidence            9999986 455556666663

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.63  E-value=1.9e-06  Score=94.28  Aligned_cols=218  Identities=11%  Similarity=-0.031  Sum_probs=140.7

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      .-..++.+|...|..+|++++|.++++..+...|+...+++..+.-+.......++...  .+........ +....+.+
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-~~~~ve~~  105 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-KWAIVEHI  105 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-chhHHHHH
Confidence            34467899999999999999999999999999999999888765522222222233222  2221111111 01112211


Q ss_pred             hcCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---
Q 012265          109 DLRL-SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD---  184 (467)
Q Consensus       109 ~~kL-~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~---  184 (467)
                      ...+ ..+...-+++.+|.+|-.+|+.++|...++++++.+|++..+.-..|..|... +.++|+.++.+++..+=+   
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq  184 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQ  184 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhc
Confidence            1111 11222347788899999999999999999999999999999888888888777 999999999887765311   


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHhccccC-CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIAAESLAKIPDI-QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      ......+..--+....-+++.-..+++++... .+  .-+++.-+...|...+++++++.+|+.++.+.
T Consensus       185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~  253 (906)
T PRK14720        185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD  253 (906)
T ss_pred             chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence            11111122222233334444444444444421 11  23445567788889999999999999998763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.61  E-value=1.5e-06  Score=84.71  Aligned_cols=126  Identities=23%  Similarity=0.218  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN--KAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~--~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      .-...++|..|++|.|.+.++.+...+.++....+..|-+.+..|  ++.+|.-+|+++...+|.++.. ...+|-+++.
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~-lng~A~~~l~  213 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL-LNGLAVCHLQ  213 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHH
Confidence            345678899999999999999999888877777777776665555  6899999999999988887654 4788999999


Q ss_pred             cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI-DGAAAVLDSAIK  248 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~-~~A~~~l~~al~  248 (467)
                      +|+|++|...|+++++.++ +|.++..++.+...+|+. +.+..++.++..
T Consensus       214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            9999999999999987665 788888899999999988 556666666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.59  E-value=5.5e-07  Score=85.19  Aligned_cols=104  Identities=14%  Similarity=0.001  Sum_probs=88.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      -+.+-=++..++|.+|...+.+++..+|.+..++-..|++|.+.|.++.|++-|+.++..+|.....+ ..|+.+|+.+|
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay-~RLG~A~~~~g  163 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY-GRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH-HHHHHHHHccC
Confidence            45677778889999999999999999999988888899999999999999999999999999888764 88999999999


Q ss_pred             ChHHHHHHHhccccCCC-ChhHHHHH
Q 012265          202 HPFIAAESLAKIPDIQH-MPATVATL  226 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~-~p~~~~~l  226 (467)
                      ++.+|+..|++++++++ ++.+...|
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            99999999999999887 44333333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.59  E-value=1.4e-05  Score=84.01  Aligned_cols=130  Identities=14%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      +++.+.++...+..++|..++.++-..+|..... ++..|+++..+|+..+|.+.|..++.+++ ++.....++.+|++.
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~-~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASV-YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH-HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            4456666677788888888888888888877654 47778888888888888888888887765 555666788888888


Q ss_pred             CCHHHHHH--HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          234 GDIDGAAA--VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       234 g~~~~A~~--~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      |+..-|..  ++..++...       +....+|..+|.++...|+.++|.+.|..+++..+
T Consensus       732 G~~~la~~~~~L~dalr~d-------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLD-------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CCcchHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            87776666  888888652       23335688888888888888888888888888764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.59  E-value=3.3e-07  Score=89.33  Aligned_cols=194  Identities=15%  Similarity=0.080  Sum_probs=132.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCC--CC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcHHHHHHHH
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFP--DS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLAR  193 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P--~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~~~l~L  193 (467)
                      -+..+-..+++++|.+.+.++...+-  ++   ..-.+..+..+++..++++|+..|++++..+     |.....++..+
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            35556667778888888886643321  11   1124455666667779999999999988753     22222345788


Q ss_pred             HHHHHHc-CChHHHHHHHhccccC----CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          194 AQVAAAA-NHPFIAAESLAKIPDI----QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       194 aql~~~~-g~~~~A~~~L~~~~~~----~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      |.+|... |++++|+..|+++.++    +.   ...++..++.++.+.|++++|+..|++......+..-........++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            9999998 9999999999999853    11   12345678999999999999999999987643211111123445566


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhcCC------HHHHHHHHHHhccCChhHHHHHHh
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKAESYEK  317 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~pd------~~ala~Lv~a~~~~d~~kA~~l~~  317 (467)
                      ..+.+++..||+..|...|++....+|.      ...+..|+.|+...|.+.-...+.
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~  258 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA  258 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            6788899999999999999999988763      366888999998888765544433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.58  E-value=1.8e-07  Score=69.59  Aligned_cols=63  Identities=17%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                      ..+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|+++++..|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            567778888888888888888888888888888888888888888888888888888888775

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.58  E-value=4.4e-07  Score=70.65  Aligned_cols=94  Identities=20%  Similarity=0.062  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      +++.+.+++..|++++|...++.++...|.+..++...+.++...+++++|+..++.++...|.+... .+.++.++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA-YYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHH
Confidence            45666677777777777777777777777666666666666667777777777777777776666543 36667777777


Q ss_pred             CChHHHHHHHhcccc
Q 012265          201 NHPFIAAESLAKIPD  215 (467)
Q Consensus       201 g~~~~A~~~L~~~~~  215 (467)
                      |++++|...+..++.
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            777777776666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.57  E-value=7.1e-07  Score=74.24  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHH
Q 012265          153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATL  226 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l  226 (467)
                      ..++..|..+...|++++|+..|.+++..+|++.  ..+++.+|.++...|++++|+..|+.++...+    .+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            3456778888999999999999999999999763  22458899999999999999999999986433    35678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      +.+|..+|++++|+.++++++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            999999999999999999999875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.55  E-value=1.2e-05  Score=84.19  Aligned_cols=236  Identities=20%  Similarity=0.220  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      .+-++.|+...|++++|++.++.....-.+...+.-.-+.-++.+++..++...++.+.   ..+|.+.....+|+.-+ 
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li---~rNPdn~~Yy~~L~~~~-   82 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI---DRNPDNYDYYRGLEEAL-   82 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCcHHHHHHHHHHH-
Confidence            34568889999999999999998777666555555544455555655555555555543   33332222112211000 


Q ss_pred             HHHHHHHHHHHHHH-HHHcCCHHHHHHHHHhccccCCCCchHH-------------------------------HHH-HH
Q 012265          114 PKQREAIYANRVLL-LLHANKMDQARELVAALPDMFPDSVMPL-------------------------------LLQ-AA  160 (467)
Q Consensus       114 ~~q~~~l~~n~all-~l~~~~~~~A~~~~~~l~~~~P~~~~~~-------------------------------ll~-a~  160 (467)
                                 ++- .+.....+....+++.+...+|.+..+.                               +.. -.
T Consensus        83 -----------g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~  151 (517)
T PF12569_consen   83 -----------GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP  151 (517)
T ss_pred             -----------hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence                       000 0111234444455555555555432221                               111 11


Q ss_pred             HHHhcCChhHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          161 VLVRENKAGKAEELLGQFAEK----------------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~----------------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      +|....+..-...++..+...                .|.....+++.|||.|-..|++++|+..++++++..+ .+.++
T Consensus       152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely  231 (517)
T PF12569_consen  152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY  231 (517)
T ss_pred             HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            222222222223444444322                1222112457889999999999999999999998766 68889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ...+.+|.+.|++.+|...++.|.....    . +.+  +-..++..+++.|+.++|..++..-...+
T Consensus       232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~----~-DRy--iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  232 MTKARILKHAGDLKEAAEAMDEARELDL----A-DRY--INSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCCh----h-hHH--HHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            9999999999999999999999987531    1 222  23346888999999999999887765544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=4.2e-07  Score=85.97  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=45.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265          158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI  236 (467)
Q Consensus       158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~  236 (467)
                      .+.-+.+.++|.+|+..|.++|+..|.+..+. -..|++|.+.|.|+.|++-.+.++.+++ ....|..|+.+|..+|++
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyy-cNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYY-CNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            33444455555555555555555555554332 3445555555555555555555554443 233344444445455555


Q ss_pred             HHHHHHHHHHHHH
Q 012265          237 DGAAAVLDSAIKW  249 (467)
Q Consensus       237 ~~A~~~l~~al~~  249 (467)
                      ++|+..|+++++.
T Consensus       166 ~~A~~aykKaLel  178 (304)
T KOG0553|consen  166 EEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHhhhcc
Confidence            5555444444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.55  E-value=1.6e-06  Score=87.44  Aligned_cols=118  Identities=23%  Similarity=0.222  Sum_probs=102.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF  204 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~  204 (467)
                      ..+....++++.|+..++++.+.+|+   ...+.|.++...++..+|++++.+.+..+|.+...+ ...|+.++..++++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL-~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELL-NLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhcCCHH
Confidence            33444578899999999999999986   456678888888899999999999999999997754 67899999999999


Q ss_pred             HHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265          205 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSA  246 (467)
Q Consensus       205 ~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~a  246 (467)
                      .|+.+.+++.+..+ ....|..|+.+|...|+++.|+..++.+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999998766 5578999999999999999999888854

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.54  E-value=3.1e-07  Score=72.17  Aligned_cols=81  Identities=20%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             cCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          165 ENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      +|++++|+.+++++++..|.+ .....+.+|.+|.+.|++++|+.++++ ...+. ++.....++.++.++|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            577888888888888887743 222336678888888888888888877 43332 345555668888888888888888


Q ss_pred             HHHH
Q 012265          243 LDSA  246 (467)
Q Consensus       243 l~~a  246 (467)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=5.5e-06  Score=81.34  Aligned_cols=186  Identities=16%  Similarity=0.082  Sum_probs=137.8

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      -...+..+.++...|++++|..+--.+++.++.+...++|-  +++ +--..+...+.+.+.+....+|.+..+-     
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr--g~~-~yy~~~~~ka~~hf~qal~ldpdh~~sk-----  240 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR--GLC-LYYNDNADKAINHFQQALRLDPDHQKSK-----  240 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc--ccc-cccccchHHHHHHHhhhhccChhhhhHH-----
Confidence            34566678999999999999999999999999888877753  332 1112344555555555444443332211     


Q ss_pred             CCCHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH----HHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          111 RLSPKQRE--AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP----LLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       111 kL~~~q~~--~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                       -...+..  ....+.+.-.+..|++..|.+.+...+..+|++...    +.-.|.+.++.|+..+|+.-+..+++.+|.
T Consensus       241 -~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550|consen  241 -SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             -hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence             1111111  235567888899999999999999999999998653    345677888999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATL  226 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l  226 (467)
                      ....+ +..|+.|+..++|++|++-|+++.+...++.+..++
T Consensus       320 yikal-l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l  360 (486)
T KOG0550|consen  320 YIKAL-LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL  360 (486)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            88765 888999999999999999999998766555444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.52  E-value=2.7e-06  Score=76.20  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             HHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHh
Q 012265          136 QARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLA  211 (467)
Q Consensus       136 ~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~  211 (467)
                      ++...+..+.+.++...  ..++..+.++...|++++|+..|.+++...|+..  ..+++.+|.+|...|++++|+..|+
T Consensus        17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~   96 (168)
T CHL00033         17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF   96 (168)
T ss_pred             cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33444444433444432  2345566666677778888888777777665432  1234677778888888888888888


Q ss_pred             ccccCCC-ChhHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHh
Q 012265          212 KIPDIQH-MPATVATLVALKE-------RAGDIDGAAAVLDSAIKWWLNA  253 (467)
Q Consensus       212 ~~~~~~~-~p~~~~~l~~ly~-------~~g~~~~A~~~l~~al~~~~~~  253 (467)
                      +++.+.+ ....+..++.+|.       ..|+++.|...+.+++.+|...
T Consensus        97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033         97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            7776543 3344555555555       6677777777777776666543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.9e-06  Score=82.07  Aligned_cols=119  Identities=12%  Similarity=0.002  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC---CHHHHHHHH
Q 012265          168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG---DIDGAAAVL  243 (467)
Q Consensus       168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g---~~~~A~~~l  243 (467)
                      .++-+.-++.-+..+|+|...+ ..||++|+.+|+++.|...|.++..+.+ +|.++..++.++..+.   ...++..+|
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW-~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGW-DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            4455567788899999999886 8999999999999999999999998875 8898888877665543   457889999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ++++...      ..+...+++ +|..+++.|+|.+|+..++.++...|..
T Consensus       217 ~~al~~D------~~~iral~l-LA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         217 RQALALD------PANIRALSL-LAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHhcC------CccHHHHHH-HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            9999752      233444343 7999999999999999999999988653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.50  E-value=1.1e-05  Score=74.58  Aligned_cols=178  Identities=13%  Similarity=0.132  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ...+.|..+...|++++|+..|+.++...|...-+-                                            
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~--------------------------------------------   42 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP--------------------------------------------   42 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH--------------------------------------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH--------------------------------------------
Confidence            358899999999999999999999998877432111                                            


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhc-----------CChhHHHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRE-----------NKAGKAEELLGQF  178 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~-----------~~~~~A~~~l~~~  178 (467)
                            .+.+..+..++..|+++.|+..++.++..+|++..   +.++.|..+...           +...+|+..++.+
T Consensus        43 ------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l  116 (203)
T PF13525_consen   43 ------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL  116 (203)
T ss_dssp             ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence                  13456677888999999999999999999999865   455666655432           2335899999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265          179 AEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN  258 (467)
Q Consensus       179 l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~  258 (467)
                      +..+|++.-.   ..|.-.+.         .+...+     ..--..++.+|.+.|.+..|+.-++.++..|++    ..
T Consensus       117 i~~yP~S~y~---~~A~~~l~---------~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~----t~  175 (203)
T PF13525_consen  117 IKRYPNSEYA---EEAKKRLA---------ELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPD----TP  175 (203)
T ss_dssp             HHH-TTSTTH---HHHHHHHH---------HHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT----SH
T ss_pred             HHHCcCchHH---HHHHHHHH---------HHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----Cc
Confidence            9999997432   11211111         011100     011234688899999999999999999988754    34


Q ss_pred             hHHHHHHHHHHHHHHCCChhHHH
Q 012265          259 KLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       259 ~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                      .....+..++..+...|..+.|.
T Consensus       176 ~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  176 AAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChHHHH
Confidence            44456666889999999988543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.50  E-value=1.2e-06  Score=76.27  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ...|-.+-.++..|++++|.+.|+-+...+|.+...++-+|.++-..|++.+|+..|..++...|+++... +.+|+.|+
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~-~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP-WAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH-HHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999998764 89999999


Q ss_pred             HcCChHHHHHHHhccccC
Q 012265          199 AANHPFIAAESLAKIPDI  216 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~  216 (467)
                      ..|+.+.|...|+.++..
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999998753

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.49  E-value=2.2e-06  Score=86.36  Aligned_cols=93  Identities=14%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      +..|..++..|++.+|+.+|.+++..+|++... ++.+|.+|+..|++++|+..+++++.+.+ ++..+..++.+|..+|
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a-~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAEL-YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            456777889999999999999999999999875 58999999999999999999999998876 6778889999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 012265          235 DIDGAAAVLDSAIKW  249 (467)
Q Consensus       235 ~~~~A~~~l~~al~~  249 (467)
                      ++++|+..|++++..
T Consensus        85 ~~~eA~~~~~~al~l   99 (356)
T PLN03088         85 EYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999976

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.48  E-value=8.3e-07  Score=66.47  Aligned_cols=64  Identities=22%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hhHHHHHH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-PATVATLV  227 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~~~~~l~  227 (467)
                      +..|++++|+.+|++++..+|++... ++.+|.+|+.+|++++|..+|++++...++ +.+...++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEA-RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHH-HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            56788899999999999999988775 488899999999999999999988876553 55554444

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=3.3e-05  Score=72.01  Aligned_cols=168  Identities=21%  Similarity=0.223  Sum_probs=114.3

Q ss_pred             HHHHhccccCCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265          139 ELVAALPDMFPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~  217 (467)
                      +..+.+....-++... .++-|.+++..+++++|++.+...     ++.+.. ..-++++++..+++-|...++++.+++
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~-Al~VqI~lk~~r~d~A~~~lk~mq~id  167 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAA-ALNVQILLKMHRFDLAEKELKKMQQID  167 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3344444444445433 445666788999999999988763     233333 566899999999999999999998765


Q ss_pred             CChhHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-C
Q 012265          218 HMPATVATLVALK----ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-G  292 (467)
Q Consensus       218 ~~p~~~~~l~~ly----~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-p  292 (467)
                      .. .++..|+..+    ...+.+.+|.-+|++..+.++      +.. .++...+.+++.+|++++|..+++.++..+ .
T Consensus       168 ed-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~------~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  168 ED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP------PTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             hH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC------CCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            42 2333344333    334567788888888766431      222 245556888899999999999999999887 4


Q ss_pred             CHHHHHHHHHHhcc--CChhHHHHHHhcCC
Q 012265          293 SIEALVGLVTTSAH--VDVDKAESYEKRLK  320 (467)
Q Consensus       293 d~~ala~Lv~a~~~--~d~~kA~~l~~~L~  320 (467)
                      +++++++++.+.-+  .|.+-.+.++.+|.
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            68999998887644  34445566666654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.44  E-value=2.6e-07  Score=72.63  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             cCCHHHHHHHHHhccccCCCC--chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHH
Q 012265          131 ANKMDQARELVAALPDMFPDS--VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAE  208 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~  208 (467)
                      +|+++.|+..+++++...|.+  ...++..|.++.+.|++++|+.++++ +...|.+... ++.+|+.++..|++++|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~-~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDI-HYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHH-HHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHH-HHHHHHHHHHhCCHHHHHH
Confidence            578999999999999999954  34556689999999999999999998 7777776554 4778999999999999999


Q ss_pred             HHhcc
Q 012265          209 SLAKI  213 (467)
Q Consensus       209 ~L~~~  213 (467)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99863

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.41  E-value=2.4e-06  Score=81.96  Aligned_cols=98  Identities=18%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             HHHHHHHHH-HhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCC----CChhHHHHH
Q 012265          154 PLLLQAAVL-VRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQ----HMPATVATL  226 (467)
Q Consensus       154 ~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~~p~~~~~l  226 (467)
                      ..+..|.-+ ...|+|++|+..|+.++..+|++.  ..+++.+|++|...|++++|+..|++++...    ..+..+..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            344444434 567999999999999999999973  2356999999999999999999999998532    257778889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      +.+|..+|++++|+..|++++..|+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999998764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.39  E-value=6.8e-05  Score=70.10  Aligned_cols=169  Identities=18%  Similarity=0.129  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR  193 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L  193 (467)
                      ..+|+.++-.|..|++++|.+.|+.+...+|.++.   +.+.++..+.+.+++++|+..+.+++..+|.+..  .+.++.
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk  114 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK  114 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence            46789999999999999999999999999998754   5778888899999999999999999999998644  344444


Q ss_pred             HHHHHHc-----CCh---HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHhccCCchHHH
Q 012265          194 AQVAAAA-----NHP---FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA---VLDSAIKWWLNAMTEDNKLSV  262 (467)
Q Consensus       194 aql~~~~-----g~~---~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~---~l~~al~~~~~~~~~~~~~~~  262 (467)
                      +..+..+     .+.   .+|+..|+.++.--++..             -...|..   .+...+..             
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~LA~-------------  168 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDALAG-------------  168 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHHHHH-------------
Confidence            5443211     111   122222222221000000             0011111   12222211             


Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCCh-hHHH
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVDV-DKAE  313 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d~-~kA~  313 (467)
                      .=+.+|.+|++.|.+..|+.-++.+++..|+    .+++..+..+|-.+.+ +.|.
T Consensus       169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~  224 (254)
T COG4105         169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK  224 (254)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence            1123799999999999999999999998876    5889999999877664 4443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=5.3e-05  Score=79.37  Aligned_cols=194  Identities=10%  Similarity=0.052  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -.-.|-+..++|...|+..+|..+..+.++ +|+|+..+.+.+- +  +.++.=+..+.....                 
T Consensus       423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD-v--~~d~s~yEkawElsn-----------------  481 (777)
T KOG1128|consen  423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD-V--LHDPSLYEKAWELSN-----------------  481 (777)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh-h--ccChHHHHHHHHHhh-----------------
Confidence            335578889999999999999999999999 5667766654321 1  111110111111110                 


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                           +-..-+.+..+.+.+..++|++|.+.++..++.+|.....++..+.+..+.++++.|.+.|..++...|++...+
T Consensus       482 -----~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaW  556 (777)
T KOG1128|consen  482 -----YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW  556 (777)
T ss_pred             -----hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhh
Confidence                 001123445566666678999999999999999999999999999999999999999999999999999998875


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                       ..++-.|+..|+-.+|...|..++..++ ++.+|-....+....|.+++|+..+.+.+..-
T Consensus       557 -nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  557 -NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             -hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence             8999999999999999999999987665 67777777777888999999999999887653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.37  E-value=1.1e-05  Score=72.64  Aligned_cols=85  Identities=12%  Similarity=0.103  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE  231 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~  231 (467)
                      ++..|..+...|++++|+..+++++...|+..  ..+++.+|.+|...|++++|+..|++++...+ .+..+..++.+|.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            33444444445555555555555554433311  11234555555555555555555555554432 3333444455555


Q ss_pred             HcCCHHHH
Q 012265          232 RAGDIDGA  239 (467)
Q Consensus       232 ~~g~~~~A  239 (467)
                      ..|+...+
T Consensus       118 ~~g~~~~a  125 (172)
T PRK02603        118 KRGEKAEE  125 (172)
T ss_pred             HcCChHhH
Confidence            55544433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.37  E-value=3.8e-06  Score=65.16  Aligned_cols=93  Identities=16%  Similarity=0.078  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      ++..|..+...|++++|+..+++++...|.+... ++.++.++...|++++|+..|+.++...+ .+.++..++.++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADA-YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            4567778888999999999999999999988654 58899999999999999999999987654 556778889999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 012265          234 GDIDGAAAVLDSAIK  248 (467)
Q Consensus       234 g~~~~A~~~l~~al~  248 (467)
                      |+++.|...+..++.
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            999999999988765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.7e-05  Score=76.52  Aligned_cols=164  Identities=13%  Similarity=0.058  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ...+.+|+++...|++++|+..|+.+...+..+..+.+-++.-..-++.   +.++.......+.. |-...+.-.|.+|
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA~~~~~ka~k~-pL~~RLlfhlahk  133 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEAKSIAEKAPKT-PLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence            3456689999999999999999999998654444333211111111111   11111111111000 0000000011112


Q ss_pred             CCHH----------H-HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265          112 LSPK----------Q-REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE  180 (467)
Q Consensus       112 L~~~----------q-~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~  180 (467)
                      |...          | ...-++..+.+++-.-.+.+|++.+.+++..+|+....-+..|..+.+..=++-+..++.-++.
T Consensus       134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            2110          0 0011233455555556689999999999999998888778888888999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHc
Q 012265          181 KLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       181 ~~P~~~~~~~l~Laql~~~~  200 (467)
                      ++|++.-+. .+++-.+.+.
T Consensus       214 q~pdStiA~-NLkacn~fRl  232 (557)
T KOG3785|consen  214 QFPDSTIAK-NLKACNLFRL  232 (557)
T ss_pred             hCCCcHHHH-HHHHHHHhhh
Confidence            999987654 4445444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.35  E-value=1.4e-05  Score=82.43  Aligned_cols=166  Identities=15%  Similarity=0.082  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+|..++=.+..+||....+.++.+++.+|++.+.+-+++..+...|+.++|...+...+..++.+.. ++-.+|-++
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-CwHv~gl~~   85 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-CWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch-hHHHHHHHH
Confidence            3457778888889999999999999999999999999999999999999999999999999998888754 457789999


Q ss_pred             HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR  276 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~  276 (467)
                      ....+|++|+.+|..++.+.+ +..++.-|+.+..++++++.....=...++..       +.....|..++..+.-.|+
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHH
Confidence            999999999999999998876 77888899999999999987766655555432       3334457767777888999


Q ss_pred             hhHHHHHHHHHHHhc
Q 012265          277 EEDASHLFEELVKTH  291 (467)
Q Consensus       277 ~~~A~~~le~ll~~~  291 (467)
                      +..|..+++...+..
T Consensus       159 y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  159 YKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999888887765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.34  E-value=8.7e-07  Score=66.35  Aligned_cols=68  Identities=29%  Similarity=0.363  Sum_probs=60.4

Q ss_pred             HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ++..|++++|++.++.++..+|++..+.+..|.+++..|++++|..+|.+++..+|+++.. +..+++|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY-QQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH-HHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH-HHHHhcC
Confidence            4678999999999999999999999999999999999999999999999999999998653 4666664

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.33  E-value=1.2e-05  Score=72.21  Aligned_cols=93  Identities=14%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                      .....+++.+.++...|++++|...++++++..|+..   .++...|.++...|++++|+..+.+++..+|++.... ..
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~  111 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL-NN  111 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH-HH
Confidence            3445789999999999999999999999998776643   4677888899999999999999999999999987654 78


Q ss_pred             HHHHHHHcCChHHHHHH
Q 012265          193 RAQVAAAANHPFIAAES  209 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~  209 (467)
                      ++.+|...|+...|...
T Consensus       112 lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHHHHcCChHhHhhC
Confidence            89999998887665433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.32  E-value=1e-06  Score=65.43  Aligned_cols=60  Identities=12%  Similarity=0.057  Sum_probs=44.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~  217 (467)
                      ..|..++..|++++|+..|+++++.+|++... ++.+|.++..+|++++|+..|+++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a-~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEA-WYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            35666777888888888888888888877665 3777888888888888888877776543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.32  E-value=5.3e-06  Score=79.62  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=85.9

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHH
Q 012265          119 AIYANRVLLL-LHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLA  192 (467)
Q Consensus       119 ~l~~n~all~-l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~  192 (467)
                      ...|+.+.-+ +..|++++|+..|+.+++.+|++.   .+++..|.+|+..|++++|+..|+.++..+|++..  .+.+.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3567777765 567899999999999999999985   57889999999999999999999999999998522  23478


Q ss_pred             HHHHHHHcCChHHHHHHHhccccCCC
Q 012265          193 RAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      +|.+|...|++++|+.+|+++++..+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            89999999999999999999986544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.4e-05  Score=74.55  Aligned_cols=115  Identities=15%  Similarity=0.040  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 012265          134 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN---HPFIAAESL  210 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g---~~~~A~~~L  210 (467)
                      .+..+..++.-+..+|++...+.+++.+|...|++..|...|.+++...|+++..+ +.+|.++..+.   ...++...|
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~-~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL-LGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCcccHHHHHHH
Confidence            45555566667788999999999999999999999999999999999999998865 88888776543   356889999


Q ss_pred             hccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          211 AKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       211 ~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ++++..++ +....+.|+.-+.++|++.+|...++..+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            99998887 7778889999999999999999999998875

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=0.0001  Score=73.77  Aligned_cols=175  Identities=18%  Similarity=0.250  Sum_probs=140.7

Q ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHhccccCCCCc----hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          120 IYANRVLL-LLHANKMDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       120 l~~n~all-~l~~~~~~~A~~~~~~l~~~~P~~~----~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      ++.|.|+. .+...+.+.+++++...+++-|...    -.+++-|...+++.+...|.++|..++-..|.+-..  -...
T Consensus       367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF--k~YI  444 (677)
T KOG1915|consen  367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF--KGYI  444 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH--HHHH
Confidence            55666653 5678889999999999998888643    257788888899999999999999999999987532  3456


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .+-++.++++-+..+|++.++.++ +-..|...+.+-..+|+.+-|..+|+-|++.     |.-+.-..+|.....|-..
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-----p~ldmpellwkaYIdFEi~  519 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ-----PALDMPELLWKAYIDFEIE  519 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-----cccccHHHHHHHhhhhhhh
Confidence            677789999999999999998766 4556888899999999999999999998863     2112223456667788899


Q ss_pred             CCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265          274 HGREEDASHLFEELVKTHGSIEALVGLV  301 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~pd~~ala~Lv  301 (467)
                      .|.++.|..+|+++|...+...+++.+.
T Consensus       520 ~~E~ekaR~LYerlL~rt~h~kvWisFA  547 (677)
T KOG1915|consen  520 EGEFEKARALYERLLDRTQHVKVWISFA  547 (677)
T ss_pred             cchHHHHHHHHHHHHHhcccchHHHhHH
Confidence            9999999999999999988766666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.30  E-value=0.00015  Score=82.13  Aligned_cols=171  Identities=14%  Similarity=0.096  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-----cHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEKLPD-----KSKI  188 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-----~~~~  188 (467)
                      .+....+.+++..|+++.|...++.++...|....     +....+.++...|++++|...+.+++.....     ....
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            34556788889999999999999988765554332     2345566778899999999999998865332     1112


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCC------CCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQ------HMP---ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK  259 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p---~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~  259 (467)
                      ....++.++..+|++++|...+++++++.      ..+   .+...++.++...|++++|...+.+++.......  +..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~  610 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQ  610 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chH
Confidence            33677999999999999999999887531      112   1234567788889999999999999988754322  122


Q ss_pred             HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          260 LSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ....+..+|.++...|++++|...++++....
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            23344557889999999999999999997753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.29  E-value=1.5e-05  Score=80.54  Aligned_cols=92  Identities=21%  Similarity=0.076  Sum_probs=84.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      .-.+.+++..++-.+|.+++.+.+..+|.+...+.++|..++..++++.|+.+.++++...|++-..+ +.||++|+..|
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W-~~La~~Yi~~~  282 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW-YQLAECYIQLG  282 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH-HHHHHHHHhcC
Confidence            34677777888888999999999999999988888999999999999999999999999999998776 89999999999


Q ss_pred             ChHHHHHHHhccc
Q 012265          202 HPFIAAESLAKIP  214 (467)
Q Consensus       202 ~~~~A~~~L~~~~  214 (467)
                      ++++|+..|+.+.
T Consensus       283 d~e~ALlaLNs~P  295 (395)
T PF09295_consen  283 DFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHhcCc
Confidence            9999999999885

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.20  E-value=1.9e-05  Score=82.69  Aligned_cols=210  Identities=16%  Similarity=0.092  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      +..++|.++...|=+.+|..||+++---+|   .+..     |..+++...+....+...   +++              
T Consensus       400 ~q~~laell~slGitksAl~I~Erlemw~~---vi~C-----Y~~lg~~~kaeei~~q~l---ek~--------------  454 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLEMWDP---VILC-----YLLLGQHGKAEEINRQEL---EKD--------------  454 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHHHHHH---HHHH-----HHHhcccchHHHHHHHHh---cCC--------------
Confidence            457889999999999999999998765433   2222     222333333333222221   110              


Q ss_pred             CHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          113 SPKQREAIYANRVLLLLHANK-------MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~-------~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                                |-.++|...|+       +++|.++.+....      .+....|...+.++++.++.+.++..++.+|-.
T Consensus       455 ----------~d~~lyc~LGDv~~d~s~yEkawElsn~~sa------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq  518 (777)
T KOG1128|consen  455 ----------PDPRLYCLLGDVLHDPSLYEKAWELSNYISA------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ  518 (777)
T ss_pred             ----------CcchhHHHhhhhccChHHHHHHHHHhhhhhH------HHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence                      12334444444       4556555554322      244445555567899999999999999999998


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                      ...+ +.++-++++.+++..|...|...+.+++ +...|+++...|+..++..+|...+.+|+....+    +-   .+|
T Consensus       519 ~~~w-f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~----~w---~iW  590 (777)
T KOG1128|consen  519 LGTW-FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ----HW---QIW  590 (777)
T ss_pred             hhHH-HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC----CC---eee
Confidence            8765 9999999999999999999999998876 5667999999999999999999999999975311    11   234


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+.-.+....|.+++|...|.+++...
T Consensus       591 ENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  591 ENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             echhhhhhhcccHHHHHHHHHHHHHhh
Confidence            444445678899999999999999765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.20  E-value=2.5e-05  Score=69.89  Aligned_cols=94  Identities=15%  Similarity=0.002  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                      ....+++.+.++...|++++|...+..++...|++.   .++...|.++...|++++|+..+++++..+|..... +..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~-~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA-LNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHH
Confidence            345678999999999999999999999988877643   356778889999999999999999999999998765 4778


Q ss_pred             HHHHH-------HcCChHHHHHHHh
Q 012265          194 AQVAA-------AANHPFIAAESLA  211 (467)
Q Consensus       194 aql~~-------~~g~~~~A~~~L~  211 (467)
                      +.+|.       ..|++++|+..+.
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHH
Confidence            88888       5555554444333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.20  E-value=3.2e-06  Score=63.48  Aligned_cols=61  Identities=11%  Similarity=0.028  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHHhcccc
Q 012265          154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESLAKIPD  215 (467)
Q Consensus       154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L~~~~~  215 (467)
                      .+...|.++...|++++|+..|.++++.+|++... ++.+|.+|..+| ++++|+..++++++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~-~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEA-YYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555443 255555555555 45555555555543

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=5.9e-05  Score=71.36  Aligned_cols=160  Identities=13%  Similarity=0.059  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      ...|||+|-...++.+|...|+++-...|......+--+..++...   -+.++++-+..+.+.        +.|     
T Consensus        47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~---i~ADALrV~~~~~D~--------~~L-----  110 (459)
T KOG4340|consen   47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC---IYADALRVAFLLLDN--------PAL-----  110 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc---ccHHHHHHHHHhcCC--------HHH-----
Confidence            3557788888888888888888877777765555443223333222   234555544332111        011     


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                        ....+.+ .+-+.+..+++-.|+.+++++...+  ......-.+-++.+.|+++.|++.++.++....-++..+ +.+
T Consensus       111 --~~~~lqL-qaAIkYse~Dl~g~rsLveQlp~en--~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA-Yni  184 (459)
T KOG4340|consen  111 --HSRVLQL-QAAIKYSEGDLPGSRSLVEQLPSEN--EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA-YNL  184 (459)
T ss_pred             --HHHHHHH-HHHHhcccccCcchHHHHHhccCCC--ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH-HHH
Confidence              1112222 3444556677777777777654211  222334556667788888888888888777655454444 677


Q ss_pred             HHHHHHcCChHHHHHHHhcccc
Q 012265          194 AQVAAAANHPFIAAESLAKIPD  215 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~  215 (467)
                      |-.+.+.|+++.|+.....+++
T Consensus       185 ALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  185 ALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHH
Confidence            7777788888888888777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.17  E-value=4.5e-06  Score=62.68  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCC
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLP  183 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P  183 (467)
                      .++++.+..++..|++++|+..|++++..+|++..++...|.++...| ++.+|+..++++++.+|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            456666777777777777777777777777777666666666666666 56777777777766665

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.17  E-value=0.00021  Score=79.54  Aligned_cols=171  Identities=14%  Similarity=0.191  Sum_probs=134.5

Q ss_pred             cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265          131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL  210 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L  210 (467)
                      -|.-+.+.+.|+++.+ +-+....++-+..+|.+..++++|.++|+.+++++-+.... +..+++.++++++-++|..+|
T Consensus      1510 yG~eesl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v-W~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQ-YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV-WIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred             hCcHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH-HHHHHHHHhcccHHHHHHHHH
Confidence            4556777788888764 44444556667778999999999999999999999855544 588999999999999999999


Q ss_pred             hccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265          211 AKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL  287 (467)
Q Consensus       211 ~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l  287 (467)
                      .+++..-+   +-+++...+.+-.+.|+.+.+..+|+..+.-|+.+       .++|.-....-..+|+.+.+..+|+++
T Consensus      1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            99986432   56778888899999999999999999998876432       246766677778899999999999999


Q ss_pred             HHhc-C--CHHHHHHHHHHh--ccCChh
Q 012265          288 VKTH-G--SIEALVGLVTTS--AHVDVD  310 (467)
Q Consensus       288 l~~~-p--d~~ala~Lv~a~--~~~d~~  310 (467)
                      +... +  ....+....+.|  ++.|-.
T Consensus      1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             HhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            9887 3  356667767777  445543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.17  E-value=1e-05  Score=61.38  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=53.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      ..+++..++++.|.+.++.++..+|++..+++..|.++...|++.+|...|+++++..|++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            3567788888888888888888888888888888888888888888888888888888887654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.15  E-value=6.1e-05  Score=66.72  Aligned_cols=126  Identities=17%  Similarity=0.168  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHH
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEK-LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALK  230 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly  230 (467)
                      .+-++..+...|++.+|...|++.+.- +-++.. +.+.+|+..+..+++.+|..+|+.+.+..+   .|+....++..|
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            344556677889999999999998763 455654 448899999999999999999999987543   677777889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      ..+|++..|...|+.++.+|+.     +.-  ..+ .+.++..+|+..+|...|..+..
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg-----~~a--r~~-Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPG-----PQA--RIY-YAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCC-----HHH--HHH-HHHHHHHhcchhHHHHHHHHHHH
Confidence            9999999999999999998732     221  122 58889999988877665555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=3.2e-05  Score=73.12  Aligned_cols=197  Identities=18%  Similarity=0.144  Sum_probs=139.1

Q ss_pred             HHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHH
Q 012265          129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAE  208 (467)
Q Consensus       129 l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~  208 (467)
                      ++-.+++.|++++....+..|.+..+.-+++..|+...++.+|-.+|+++...+|..... ++..||.+.+.+.+.+|+.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-rlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-RLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-HHHHHHHHHHhcccHHHHH
Confidence            566778899999998888999888888888889999999999999999999999988765 5888999999999999999


Q ss_pred             HHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265          209 SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL  287 (467)
Q Consensus       209 ~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l  287 (467)
                      ++..+.+.+. ....+..-+.+.-..+++..+..++++...       ++.  ...+...|-++.+.|++++|+.-|+.+
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------en~--Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------ENE--ADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-------CCc--cchhccchheeeccccHHHHHHHHHHH
Confidence            9998886321 222333445666677888888877776321       111  112334577788899999999999999


Q ss_pred             HHhcCC-HHHHHHHHHH-hccCChhHHHHHHhc--------CCCCC-C--CCCcChhhhhh
Q 012265          288 VKTHGS-IEALVGLVTT-SAHVDVDKAESYEKR--------LKPLP-G--LNGVDVDSLEK  335 (467)
Q Consensus       288 l~~~pd-~~ala~Lv~a-~~~~d~~kA~~l~~~--------L~~~~-~--~~~vDvd~Le~  335 (467)
                      ++..+- .-...++.+| |+..+.+.|..+++.        -|.+. +  +.+|||...-+
T Consensus       171 lqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN  231 (459)
T KOG4340|consen  171 LQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN  231 (459)
T ss_pred             HhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence            987642 2122233333 456666667666542        34331 1  25788766654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.12  E-value=4.6e-05  Score=74.28  Aligned_cols=157  Identities=20%  Similarity=0.156  Sum_probs=103.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----C-C--ChhHHHHHH
Q 012265          160 AVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----Q-H--MPATVATLV  227 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~-~--~p~~~~~l~  227 (467)
                      ..+-..|++++|...|.++...+     +......+...+.+| ..+++++|+.+|++++++    . +  -..+...++
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA  121 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA  121 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34456788888888888776543     112222223444454 455999999999999753    1 1  123466789


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CC-----HHHHH
Q 012265          228 ALKERA-GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS-----IEALV  298 (467)
Q Consensus       228 ~ly~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd-----~~ala  298 (467)
                      .+|... |+++.|+.+|++|+.+|.... ........+..+|.++.+.|+|++|+.+|+++....   +-     ...+.
T Consensus       122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            999998 999999999999999997533 223445677789999999999999999999998764   21     12333


Q ss_pred             HHHHHh-ccCChhHHHHHHhc
Q 012265          299 GLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       299 ~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ..++++ ...|+-.|......
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~  221 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALER  221 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            444444 56687777665544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.12  E-value=0.0034  Score=61.75  Aligned_cols=258  Identities=18%  Similarity=0.099  Sum_probs=168.4

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh-hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~-~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      .|++.-|......|++++|..-|+.++.    |+.+.++....|+ .....+....+.++.+...+..++       +  
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-------l--  187 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-------L--  187 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------C--
Confidence            5677778888999999999999999885    5566654433333 333344555566655544332221       1  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHH-HhcCChhHHHHHHHHHHHhCC
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVL-VRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P  183 (467)
                           -|  ......--.+..|+++.|+++++.-...   .++.   ..+.++.+... .-+-+...|...-.+.++..|
T Consensus       188 -----~W--A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p  260 (531)
T COG3898         188 -----PW--AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP  260 (531)
T ss_pred             -----ch--HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence                 11  1222233456789999999999864422   2322   22445544433 335567788888889999999


Q ss_pred             CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265          184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI  263 (467)
Q Consensus       184 ~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l  263 (467)
                      +-...+ +.-+..|++.|+..++-.+|+.+....++|.+..    +|....--+.++.-++.+-... ...+  ++..+.
T Consensus       261 dlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~-slk~--nnaes~  332 (531)
T COG3898         261 DLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLE-SLKP--NNAESS  332 (531)
T ss_pred             ccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHH-hcCc--cchHHH
Confidence            988776 7889999999999999999999998888997663    3444444445666666655432 1122  222233


Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHH--HHHhccCChhHHHHHHhc
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGL--VTTSAHVDVDKAESYEKR  318 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~L--v~a~~~~d~~kA~~l~~~  318 (467)
                      + .++..-+..|++..|..--+.+....|...+...|  |..-...|-.++.+.+.+
T Consensus       333 ~-~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         333 L-AVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             H-HHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence            3 36888889999999999988888877754222222  222245788888887754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.12  E-value=0.00018  Score=75.85  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=101.1

Q ss_pred             ccCCCCchH--HHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc--------CChHHHHHHHhc
Q 012265          146 DMFPDSVMP--LLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAA--------NHPFIAAESLAK  212 (467)
Q Consensus       146 ~~~P~~~~~--~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~--------g~~~~A~~~L~~  212 (467)
                      ..-|.+..+  .++.|.-++..+.   ...|+.+|+++++.+|++..+. -.++..|...        .+...|...+++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~-A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ-AEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            445666665  4566665655444   6689999999999999986542 4445555432        234456666666


Q ss_pred             cccC--C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          213 IPDI--Q-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       213 ~~~~--~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      +..+  . ..|.++..++..+...|++++|...|++|+..-       +.. ..+..+|.++...|++++|++.|++++.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------ps~-~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------MSW-LNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5543  2 256677778888888999999999999999752       122 2455579999999999999999999999


Q ss_pred             hcCCH
Q 012265          290 THGSI  294 (467)
Q Consensus       290 ~~pd~  294 (467)
                      .+|..
T Consensus       482 L~P~~  486 (517)
T PRK10153        482 LRPGE  486 (517)
T ss_pred             cCCCC
Confidence            99864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=1.8e-05  Score=74.53  Aligned_cols=95  Identities=22%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHcCChHHHHHHHhccccC----CCChhHHHHHHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARAQVAAAANHPFIAAESLAKIPDI----QHMPATVATLVALK  230 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~~p~~~~~l~~ly  230 (467)
                      -.|.-+++.|+|.+|+..|..++..+|++.-  .++|+|++.+..+|+|++|..+|..+..-    ...|+.+..|+.+.
T Consensus       146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~  225 (262)
T COG1729         146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL  225 (262)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence            3444578999999999999999999998532  35699999999999999999999998742    23678899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHH
Q 012265          231 ERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ..+|+.++|...|++++..|+
T Consensus       226 ~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         226 GRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHhcCHHHHHHHHHHHHHHCC
Confidence            999999999999999999874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.10  E-value=4e-05  Score=75.36  Aligned_cols=254  Identities=12%  Similarity=0.006  Sum_probs=143.5

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      .-|..|+.||+..|+..++|+.|++...-=|..  -..|..--+-...|+      .|.+.+.-.+..+.--...+...+
T Consensus        52 ~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL------GNtlKv~G~fdeA~~cc~rhLd~a  125 (639)
T KOG1130|consen   52 STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL------GNTLKVKGAFDEALTCCFRHLDFA  125 (639)
T ss_pred             HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc------cchhhhhcccchHHHHHHHHhHHH
Confidence            348899999999999999999998864321111  001100000011111      111111111111100011123334


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHhccccCCCCchHHH-------------HHH
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKM-------------DQARELVAALPDMFPDSVMPLL-------------LQA  159 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~-------------~~A~~~~~~l~~~~P~~~~~~l-------------l~a  159 (467)
                      ..|-.++.   ..-++||.+.+|...|+-             +++...++.+++-|-.+....-             .++
T Consensus       126 reLgDrv~---e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLG  202 (639)
T KOG1130|consen  126 RELGDRVL---ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLG  202 (639)
T ss_pred             HHHhHHHh---hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccC
Confidence            44444432   234689999999887763             4455555555443333222111             122


Q ss_pred             HHHHhcCChhHHHHHHHHHHH---hCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHH
Q 012265          160 AVLVRENKAGKAEELLGQFAE---KLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLV  227 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~---~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~  227 (467)
                      ..|+-.|+++.|+..-+.-+.   .+.+..  .-++-.|+..|+-.|+++.|++.|...+.    +..   ....-+.|+
T Consensus       203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg  282 (639)
T KOG1130|consen  203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG  282 (639)
T ss_pred             ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence            344567889998865544332   222211  12345678889999999999999998753    221   112234678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..|.-..++..|+.++.+-+...+.-..-.......|. +|..+...|..+.|....+..++..
T Consensus       283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS-Lgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS-LGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            88888888999999888766554332111123444454 7999999999999998888777653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.09  E-value=0.00015  Score=78.26  Aligned_cols=206  Identities=12%  Similarity=0.052  Sum_probs=149.5

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR  106 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  106 (467)
                      ..-++|.+.-||.+|.---+...|...|..+..+++.|.....-+.--+..   ..+...++.-.....+.++-      
T Consensus       488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae---~~~we~a~~I~l~~~qka~a------  558 (1238)
T KOG1127|consen  488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE---ESTWEEAFEICLRAAQKAPA------  558 (1238)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc---cccHHHHHHHHHHHhhhchH------
Confidence            345889999999999988899999999999999999887766533222221   22333333322221111110      


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265          107 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS  186 (467)
Q Consensus       107 ~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~  186 (467)
                          .....+|    ..++..|+..+++.+|...++..+..+|.+...++-.+.+|...|.+.-|++.+.++...+|++.
T Consensus       559 ----~~~k~nW----~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  559 ----FACKENW----VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             ----HHHHhhh----hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence                0011122    23789999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      - .++..|-+....|.|.+|+..|..++....        ....+..++..+.-+|=...|...+++.++.+
T Consensus       631 y-~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f  701 (1238)
T KOG1127|consen  631 Y-GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF  701 (1238)
T ss_pred             H-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            4 468889999999999999999999873211        11233344445555666666777777666544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.07  E-value=0.00098  Score=74.49  Aligned_cols=197  Identities=17%  Similarity=0.168  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccC-C--CchHH-HHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRN-L--ADESS-FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~-p--~d~~~-~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      .|++---.+...++.++|.++.+++|..= +  .+.-+ ..++.-|+...-+  .-....+-|+++-..       .+  
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqy-------cd-- 1528 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQY-------CD-- 1528 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHh-------cc--
Confidence            34443344567789999999999998762 2  22222 2345556543322  222223333332110       01  


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KS  186 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~  186 (467)
                              .-.++..++-+|-...+++.|.++++.+++.|-+....|+..+..++++++-+.|-.+|.+++..-|.  +.
T Consensus      1529 --------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1529 --------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             --------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence                    12467777889999999999999999999999988889999999999999999999999999999997  55


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ..+ ---||+-.+.|+.+-+..+|+.++...+ ..++|+.++..-++.|+.+.+..+|++++..
T Consensus      1601 ~~I-skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1601 EFI-SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHH-HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            555 5669999999999999999999986544 6789998888888999999999999999864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=6.8e-05  Score=74.05  Aligned_cols=147  Identities=14%  Similarity=0.043  Sum_probs=107.4

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      +.+...-..|.+|++.|++..|...|++++..-.            +.  ... +..+. +.+..               
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~------------~~--~~~-~~ee~-~~~~~---------------  254 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLE------------YR--RSF-DEEEQ-KKAEA---------------  254 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhh------------cc--ccC-CHHHH-HHHHH---------------
Confidence            4556666789999999999999999999876421            10  000 11111 11110               


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                             -...+++|.+..++..+.+..|++.++.++...|+|.-+++-.+.++...|+++.|+..|+++++..|+|-. 
T Consensus       255 -------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-  326 (397)
T KOG0543|consen  255 -------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-  326 (397)
T ss_pred             -------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-
Confidence                   123578999999999999999999999999999999999999999999999999999999999999999954 


Q ss_pred             HHHHHHHHHHHcCChHHH-HHHHhccc
Q 012265          189 ILLARAQVAAAANHPFIA-AESLAKIP  214 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A-~~~L~~~~  214 (467)
                      ++.-|..+..+..++.+. ...|.+++
T Consensus       327 ~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  327 ARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555444444333 44444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.06  E-value=2.4e-05  Score=60.24  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          221 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       221 ~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      .++..++.+|..+|++++|+..|++++.......+..+.+...+..+|.++...|++++|+.+|+++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3466789999999999999999999998854433333345778888999999999999999999999875

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.05  E-value=0.00027  Score=76.42  Aligned_cols=246  Identities=13%  Similarity=0.061  Sum_probs=154.0

Q ss_pred             HHhhhhhHHHHHHHHHH-----HhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265           26 IEIELAPIAVQLAYVQQ-----LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ  100 (467)
Q Consensus        26 ~~~El~~i~~qlA~v~~-----~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~  100 (467)
                      ...+++.+.++.++.+.     .+.+...|...|-+.++.++.-.+++..++. ++  ++..+...+.+-+..+.+.   
T Consensus       448 k~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~-iY--rd~~Dm~RA~kCf~KAFeL---  521 (1238)
T KOG1127|consen  448 KMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQ-IY--RDSDDMKRAKKCFDKAFEL---  521 (1238)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHH-HH--HHHHHHHHHHHHHHHHhcC---
Confidence            34445555555554432     2335778888888888888766555544322 21  1111222222222222111   


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHH
Q 012265          101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQF  178 (467)
Q Consensus       101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~  178 (467)
                                  ...+- ...-..+-.+.....++.|..++-..-...|...  ..+...+-.|..-++...|+..++.+
T Consensus       522 ------------Datda-eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA  588 (1238)
T KOG1127|consen  522 ------------DATDA-EAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA  588 (1238)
T ss_pred             ------------Cchhh-hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence                        11111 1122345566667778888777555444444221  12334555567788999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC
Q 012265          179 AEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED  257 (467)
Q Consensus       179 l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~  257 (467)
                      +...|.+...+ +.|+++|...|+|..|+.+|.++..+++ +....+..+.+....|.+.+|+..+...+.....-.+.-
T Consensus       589 LR~dPkD~n~W-~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q  667 (1238)
T KOG1127|consen  589 LRTDPKDYNLW-LGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ  667 (1238)
T ss_pred             hcCCchhHHHH-HHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998865 9999999999999999999999988876 333455667777789999999999987765432211111


Q ss_pred             chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..+...+.+.+..+.-.|-+..|.+.|++.++..
T Consensus       668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f  701 (1238)
T KOG1127|consen  668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF  701 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            2333334445666667777778888888877654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=0.00017  Score=64.51  Aligned_cols=133  Identities=18%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIIL  190 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~  190 (467)
                      |...+.|..+.-.+..+.. .....++++...+|.+..+   .+..|..++..|++++|+..|+..+...-+.  ...+.
T Consensus        51 ~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~  129 (207)
T COG2976          51 QEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA  129 (207)
T ss_pred             HHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence            3445667777777777777 6677788888888887664   4566777889999999999999988654332  12345


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      +.||.+.+.+|.+++|+.+|..+.+-.+.+-+.-..+.++...|+.++|+..|++++..
T Consensus       130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            88999999999999999999998765554444556799999999999999999999874

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.02  E-value=0.00012  Score=61.43  Aligned_cols=97  Identities=22%  Similarity=0.262  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      +++++|.++..+|+.++|+.+|++++....++.                                               
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-----------------------------------------------   35 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-----------------------------------------------   35 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-----------------------------------------------
Confidence            467777777777777777777777665432211                                               


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC---CchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD---SVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~---~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                         +...+..+.+..+...|++++|...++.....+|+   +.....+.|..+...|++++|+..+-..+
T Consensus        36 ---~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   36 ---DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               00112334566666667777777777777777776   44555566666667777777776665544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00034  Score=65.45  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      +...--+.++++.+++++|.+.+...     ++.++..+...++++..+.+-|++.++++...+-+.   ...-||+.++
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---tLtQLA~awv  180 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA---TLTQLAQAWV  180 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHH
Confidence            44556688999999999999988763     566788899999999999999999999988765332   2244676665


Q ss_pred             H----cCChHHHHHHHhcccc-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          199 A----ANHPFIAAESLAKIPD-IQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       199 ~----~g~~~~A~~~L~~~~~-~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .    .+.+.+|.-+|+.+-+ ..+.|.+..-.+.+.+++|++++|..+++.++..+.       .....+..+...-+.
T Consensus       181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-------~dpetL~Nliv~a~~  253 (299)
T KOG3081|consen  181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-------KDPETLANLIVLALH  253 (299)
T ss_pred             HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHH
Confidence            3    4568999999999987 667888888889999999999999999999997531       222345555555667


Q ss_pred             CCChhHHH-HHHHHHHHhcCCHHHHHHH
Q 012265          274 HGREEDAS-HLFEELVKTHGSIEALVGL  300 (467)
Q Consensus       274 ~g~~~~A~-~~le~ll~~~pd~~ala~L  300 (467)
                      .|...++. +.+.++...+|....+-.+
T Consensus       254 ~Gkd~~~~~r~l~QLk~~~p~h~~vk~~  281 (299)
T KOG3081|consen  254 LGKDAEVTERNLSQLKLSHPEHPFVKHL  281 (299)
T ss_pred             hCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence            78776665 4556666556764343333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.00  E-value=0.00011  Score=77.29  Aligned_cols=128  Identities=16%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhc--------CChhHHHHHHHHHHHh--CCCcHH
Q 012265          121 YANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRE--------NKAGKAEELLGQFAEK--LPDKSK  187 (467)
Q Consensus       121 ~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~--------~~~~~A~~~l~~~l~~--~P~~~~  187 (467)
                      .+-++.-++..+.   ++.|+.+|+++++.+|++..++-..+..+...        .+...+...+.+++..  .|.++.
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~  421 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR  421 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence            3455666665544   78999999999999999988766655544322        2233455555555553  555654


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                       ++..+|.+++..|++++|...|+++++++++...+..++.+|...|++++|+..|++|+..
T Consensus       422 -~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        422 -IYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             4578888899999999999999999998877667888999999999999999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.00  E-value=8.3e-05  Score=70.14  Aligned_cols=95  Identities=14%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARA  194 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~La  194 (467)
                      .||.++-++..|+|..|...|...++.+|++.   .+.+.++..++.+|++.+|...|..++..+|++   ++.+ |-||
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal-lKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL-LKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH-HHHH
Confidence            79999999999999999999999999999975   468888999999999999999999999999875   3444 8999


Q ss_pred             HHHHHcCChHHHHHHHhccccC
Q 012265          195 QVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      .+....|+.++|+.+|++++.-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999999999999863

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0021  Score=62.49  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCC-----cHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG---KAEELLGQFAEKLPD-----KSKIIL  190 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~---~A~~~l~~~l~~~P~-----~~~~~~  190 (467)
                      .+.+|..+-|+..|+..+|..++..+   +|..+.-+++++.+....|+--   +=+++-++++..-.+     +...-+
T Consensus       286 EARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR  362 (557)
T KOG3785|consen  286 EARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR  362 (557)
T ss_pred             HhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence            45788888999999999999998876   5766666777776665555432   333444444332111     000112


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      -.+|..+.-..++++-+..+.++...- .+..+...++..+...|++.+|.++|-....-.   .. +..  .....+|.
T Consensus       363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~---ik-n~~--~Y~s~LAr  436 (557)
T KOG3785|consen  363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE---IK-NKI--LYKSMLAR  436 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh---hh-hhH--HHHHHHHH
Confidence            344555555566777777766664321 133445566777777777777777765543210   00 111  12223567


Q ss_pred             HHHHCCChhHHHHHH
Q 012265          270 FKLRHGREEDASHLF  284 (467)
Q Consensus       270 ~~l~~g~~~~A~~~l  284 (467)
                      +|.+.++++-|-++|
T Consensus       437 Cyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  437 CYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHhcCCchHHHHHH
Confidence            777777777777666

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.94  E-value=0.00011  Score=63.04  Aligned_cols=116  Identities=14%  Similarity=0.109  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR  193 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L  193 (467)
                      ..+++.|.-.+..|+++.|++.++.+...+|....   +.+-++..+.+.+++++|+..++++++.||.++.  .+.+..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            45789999999999999999999999999998654   5677788899999999999999999999998654  344555


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      |-.+..+..     ..|..+...+.++.             ....|...|+..+..|++
T Consensus        91 gL~~~~~~~-----~~~~~~~~~drD~~-------------~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   91 GLSYYEQDE-----GSLQSFFRSDRDPT-------------PARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             HHHHHHHhh-----hHHhhhcccccCcH-------------HHHHHHHHHHHHHHHCcC
Confidence            555544332     33333332222332             234788888888887743

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.93  E-value=0.00015  Score=60.85  Aligned_cols=93  Identities=17%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---cHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD---KSKIILLAR  193 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~---~~~~~~l~L  193 (467)
                      +.|+.+.++-..|+.++|+..+++.+......   ..+++..+..+...|++++|+.+|++.+..+|+   +.. ++..+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~-l~~f~   81 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA-LRVFL   81 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH-HHHHH
Confidence            56777888888888888888888777654333   235566677777888888888888888888777   433 34667


Q ss_pred             HHHHHHcCChHHHHHHHhcc
Q 012265          194 AQVAAAANHPFIAAESLAKI  213 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~  213 (467)
                      +..+...|++++|+.++-.+
T Consensus        82 Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            77777888888887776543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.90  E-value=6.5e-05  Score=65.79  Aligned_cols=95  Identities=11%  Similarity=-0.068  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265          153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE  231 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~  231 (467)
                      ....-.|.-+...|++++|+.+++-+.-.+|.+...+ +.||.++-..++|++|+..|.-+..++. +|......+..|+
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            3344445555677777777777777777777776665 7777777777777777777776654432 5555666777777


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 012265          232 RAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       232 ~~g~~~~A~~~l~~al~  248 (467)
                      .+|+.+.|+..|..++.
T Consensus       117 ~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        117 LMRKAAKARQCFELVNE  133 (165)
T ss_pred             HhCCHHHHHHHHHHHHh
Confidence            77777777777777765

>PRK15331 chaperone protein SicA; Provisional

Probab=97.87  E-value=0.00013  Score=63.94  Aligned_cols=94  Identities=13%  Similarity=0.015  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .|..+--+++.|++++|...|.-+.-.+|.+...++-+|.++...++|++|+..|.-+....++++... +..|+.|+..
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~-f~agqC~l~l  118 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV-FFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc-chHHHHHHHh
Confidence            466777888999999999999999999999999999999999999999999999999998888887765 8899999999


Q ss_pred             CChHHHHHHHhcccc
Q 012265          201 NHPFIAAESLAKIPD  215 (467)
Q Consensus       201 g~~~~A~~~L~~~~~  215 (467)
                      |+...|...|+.+++
T Consensus       119 ~~~~~A~~~f~~a~~  133 (165)
T PRK15331        119 RKAAKARQCFELVNE  133 (165)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999987

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.85  E-value=0.0085  Score=62.49  Aligned_cols=274  Identities=13%  Similarity=0.114  Sum_probs=159.4

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC--chHHHHHH--------Hhhhh--hccCCC------ChhHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAVA--------VNNLV--ALKGPK------DVNDSLKK   90 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~--d~~~~~va--------~nnl~--~l~~~~------~~~~a~~~   90 (467)
                      ++.-.|+-||.-|.+.|+++.|..+|++.+..-..  |-...+-+        .+..+  +.+...      +..-.+..
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            46788999999999999999999999998875321  11111100        00000  000111      11122222


Q ss_pred             hhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccccCCCC----c-hHHHHHHHHHHh
Q 012265           91 LDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA-LPDMFPDS----V-MPLLLQAAVLVR  164 (467)
Q Consensus        91 l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~-l~~~~P~~----~-~~~ll~a~l~~~  164 (467)
                      ++.+.+..+-..  ...+    -......+.--.-.+-++.|+..+-+..+.+ +.+.+|.-    + ..+.-.|.+|..
T Consensus       326 ~e~lm~rr~~~l--NsVl----LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~  399 (835)
T KOG2047|consen  326 FESLMNRRPLLL--NSVL----LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN  399 (835)
T ss_pred             HHHHHhccchHH--HHHH----HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence            222222111000  0000    0000000111122344555554444444443 34455543    2 245567888999


Q ss_pred             cCChhHHHHHHHHHHHhC-CC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-------------------CChhH
Q 012265          165 ENKAGKAEELLGQFAEKL-PD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-------------------HMPAT  222 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~-P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-------------------~~p~~  222 (467)
                      .|+.+.|..+++++.... +.  +...++..-|..-+...+++.|..+++.+..+.                   .++.+
T Consensus       400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki  479 (835)
T KOG2047|consen  400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI  479 (835)
T ss_pred             cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence            999999999999988753 22  222344666788888999999999999885321                   13456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CC-HHH---
Q 012265          223 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GS-IEA---  296 (467)
Q Consensus       223 ~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd-~~a---  296 (467)
                      |+.++.+....|-++.-..+|++.+..-   . ..|+   +..+.|.|+..+.-++++..+|++-+.++  |. .+.   
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLr---i-aTPq---ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t  552 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLR---I-ATPQ---IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT  552 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHh---c-CCHH---HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence            7778888888888888888888887651   1 1122   34456888888888888888888888887  33 122   


Q ss_pred             -HHHHHHHhccCChhHHHHH
Q 012265          297 -LVGLVTTSAHVDVDKAESY  315 (467)
Q Consensus       297 -la~Lv~a~~~~d~~kA~~l  315 (467)
                       +..++.-|....+++|..|
T Consensus       553 YLtkfi~rygg~klEraRdL  572 (835)
T KOG2047|consen  553 YLTKFIKRYGGTKLERARDL  572 (835)
T ss_pred             HHHHHHHHhcCCCHHHHHHH
Confidence             3445556667777777544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.84  E-value=5.2e-05  Score=57.44  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      .+|...+++++|+..++.++..+|++... ++.+|.+|..+|++.+|+..|+++++..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPEL-WLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchh-hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            46778888999999999999888888765 47888889999999999999888887665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.00043  Score=61.42  Aligned_cols=126  Identities=15%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcc-ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 012265          122 ANRVLLLLHANKMDQARELVAALP-DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIILLARAQVAA  198 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~-~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~~  198 (467)
                      +..+..+...|++.+|...+++.+ ..|-++....+-.|..++..++...|...|+.+.+.+|.  .+.. .+.+|+.|.
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-~Ll~aR~la  171 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-HLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-hHHHHHHHH
Confidence            456778889999999999998765 567777777778888889999999999999999998875  2333 488999999


Q ss_pred             HcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          199 AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      .+|++.+|...|+.+++.-+.|......+..+..+|+.++|..-+.....
T Consensus       172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999999999999988666677777778888899999988876665443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0011  Score=61.42  Aligned_cols=209  Identities=13%  Similarity=0.106  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH-----HHHHH-HHHHhcCChhHHHHHHHHHHHhC-----CCcHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMP-----LLLQA-AVLVRENKAGKAEELLGQFAEKL-----PDKSKI  188 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~-----~ll~a-~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~  188 (467)
                      ++..-+..+-..+++++|...+.++.+-+-++...     ..-.+ .++-...++.++..+++++...+     |+... 
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA-  111 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA-  111 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH-
Confidence            34444555556788999999888887555444332     12222 33345688899999999887654     44332 


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccC---CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDI---QH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      ..+-.|-=.++.-++++|+++|++.+.+   +.    ...++...+.+|.+...+++|...|.+-..++..-..-+....
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k  191 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK  191 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence            2255566667888999999999998642   11    2345677888999999999998888776666544221112222


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-----CHHHHHHHHHHhccCChhHHHHHHhcCCCCCCCCCcChhhhh
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEELVKTHG-----SIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLE  334 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-----d~~ala~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vDvd~Le  334 (467)
                       .+..+..+++-..||..|...|+.-.++..     +..++-+|+.+|...|++.+...++.    +.+..+|++=+.
T Consensus       192 -~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s----p~~r~MDneya~  264 (308)
T KOG1585|consen  192 -AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS----PTVRNMDNEYAH  264 (308)
T ss_pred             -HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC----hHhhhhhHHHHH
Confidence             233334556667799999999999776642     35778899999999999888777543    346777877654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0019  Score=61.53  Aligned_cols=169  Identities=21%  Similarity=0.190  Sum_probs=114.7

Q ss_pred             HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265          136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD  215 (467)
Q Consensus       136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~  215 (467)
                      +-++.+++++..   .....+..+.-+...+++.+|..+|..++...|++.... +.|+..|+..|+.+.|..+|..+..
T Consensus       121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~-~~la~~~l~~g~~e~A~~iL~~lP~  196 (304)
T COG3118         121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAK-LLLAECLLAAGDVEAAQAILAALPL  196 (304)
T ss_pred             HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHH-HHHHHHHHHcCChHHHHHHHHhCcc
Confidence            444555555433   223345566667889999999999999999999987654 9999999999999999999999864


Q ss_pred             CCCChhHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-C
Q 012265          216 IQHMPATVA--TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-G  292 (467)
Q Consensus       216 ~~~~p~~~~--~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-p  292 (467)
                      -......+.  .-..++.+.....+...+-..+..     .|++.+   +-+.+|..+...|+.++|.+.|-.++..+ .
T Consensus       197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~---aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVE---AALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            322223332  334566666666655444443322     222322   33457999999999999999999999886 2


Q ss_pred             --C---HHHHHHHHHHhccCChhHHHHHHh
Q 012265          293 --S---IEALVGLVTTSAHVDVDKAESYEK  317 (467)
Q Consensus       293 --d---~~ala~Lv~a~~~~d~~kA~~l~~  317 (467)
                        |   ...+..+..++...|+ .+..+-+
T Consensus       269 ~~d~~~Rk~lle~f~~~g~~Dp-~~~~~RR  297 (304)
T COG3118         269 FEDGEARKTLLELFEAFGPADP-LVLAYRR  297 (304)
T ss_pred             ccCcHHHHHHHHHHHhcCCCCH-HHHHHHH
Confidence              2   3446666666666676 3434433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00016  Score=71.41  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccC------CCC---------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMF------PDS---------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS  186 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~------P~~---------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~  186 (467)
                      .-.+..++..|+|..|...|++++...      +..         ...++..|..+++.+.|.+|+..+.++|+..|++.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            345667778888888887777654321      111         11245667788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI  236 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~  236 (467)
                      .++ |..|++|+..|+|+.|+..|++++.+.+ +-++...|..+-.+..++
T Consensus       292 KAL-yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  292 KAL-YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             hHH-HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            876 9999999999999999999999999876 556666666655554433

>PRK11906 transcriptional regulator; Provisional

Probab=97.78  E-value=0.0012  Score=67.01  Aligned_cols=153  Identities=10%  Similarity=0.047  Sum_probs=113.2

Q ss_pred             HHHHHHHHhcCCh---hHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHH---------cCChHHHHHHHhccccCCC-C
Q 012265          156 LLQAAVLVRENKA---GKAEELLGQFA---EKLPDKSKIILLARAQVAAA---------ANHPFIAAESLAKIPDIQH-M  219 (467)
Q Consensus       156 ll~a~l~~~~~~~---~~A~~~l~~~l---~~~P~~~~~~~l~Laql~~~---------~g~~~~A~~~L~~~~~~~~-~  219 (467)
                      ++.|.-.+..+..   ..|+.++.+++   +.+|+..... -.+|..++.         .....+|...-++++++++ +
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~-~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECY-CLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            4555544444333   47889999999   8888876643 455665543         2345677888888888876 7


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH--HHH
Q 012265          220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI--EAL  297 (467)
Q Consensus       220 p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~--~al  297 (467)
                      |.....++.++...++++.|..+|++|+...       ++....+...|.++.-.|+.++|.+.++++++.+|..  ..+
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            8888889998888999999999999999762       3445566667999999999999999999999999974  334


Q ss_pred             HHHHH-HhccCChhHHHHHH
Q 012265          298 VGLVT-TSAHVDVDKAESYE  316 (467)
Q Consensus       298 a~Lv~-a~~~~d~~kA~~l~  316 (467)
                      ..+.. .|...-.+.|..+.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~  430 (458)
T PRK11906        411 IKECVDMYVPNPLKNNIKLY  430 (458)
T ss_pred             HHHHHHHHcCCchhhhHHHH
Confidence            55555 66666666666553

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.77  E-value=0.014  Score=60.88  Aligned_cols=246  Identities=15%  Similarity=0.170  Sum_probs=161.5

Q ss_pred             ChhhHHhhhhhHHHHHHHHHHHhCChHHH-HHHHHHHhccCCCchHHHHHHH-hhhhhcc---CCCChhHHHHhhhhhhh
Q 012265           22 AEDDIEIELAPIAVQLAYVQQLLGNTQEA-FGAYTDIIKRNLADESSFAVAV-NNLVALK---GPKDVNDSLKKLDRIKE   96 (467)
Q Consensus        22 ~~ee~~~El~~i~~qlA~v~~~~G~~~eA-~~~y~~~l~~~p~d~~~~~va~-nnl~~l~---~~~~~~~a~~~l~~~~~   96 (467)
                      =|+||.-.--.+...+=||-..+|..++- .-+|+++++.-|.+-.+..--. .-.....   .....+..+...     
T Consensus        16 fEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c-----   90 (835)
T KOG2047|consen   16 FEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNC-----   90 (835)
T ss_pred             hHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHH-----
Confidence            36677666668889999999999987654 4689999999998887764211 0011111   112222222211     


Q ss_pred             hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC--chHHHHHHHHHHhcCChhHHHHH
Q 012265           97 KDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS--VMPLLLQAAVLVRENKAGKAEEL  174 (467)
Q Consensus        97 ~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~~~~~~~A~~~  174 (467)
                           +...-.+-+|+.     .|+.-.+.+++.++....-+..|+.++..-|-.  ..++-+-.......+-.+-++..
T Consensus        91 -----~er~lv~mHkmp-----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv  160 (835)
T KOG2047|consen   91 -----FERCLVFMHKMP-----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV  160 (835)
T ss_pred             -----HHHHHHHHhcCC-----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence                 111111114544     377888899999999999999999887666632  22222222222345556689999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCH---HHHHHHH
Q 012265          175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDI---DGAAAVL  243 (467)
Q Consensus       175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~---~~A~~~l  243 (467)
                      |+++|+..|.....    ....+...+++++|.+.|..++..+.        +-.+|..+..+..+.-+.   -...+.+
T Consensus       161 yrRYLk~~P~~~ee----yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii  236 (835)
T KOG2047|consen  161 YRRYLKVAPEAREE----YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII  236 (835)
T ss_pred             HHHHHhcCHHHHHH----HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence            99999999987543    35577789999999999999985321        334566666666554322   1223445


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      +..+..|      .+++.-+|..+|..|.+.|+++.|.++|++++..--
T Consensus       237 R~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~  279 (835)
T KOG2047|consen  237 RGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM  279 (835)
T ss_pred             HhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence            5555444      245566888999999999999999999999998653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.00064  Score=61.77  Aligned_cols=161  Identities=16%  Similarity=0.099  Sum_probs=90.7

Q ss_pred             HHH-HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Q 012265          122 ANR-VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA--  198 (467)
Q Consensus       122 ~n~-all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~--  198 (467)
                      ||. ++-+...|++|.|.+.|+.+.+.+|.+.-+.+..+..+.--|++.-|.+-+.++-..+|+++--. +.   +|+  
T Consensus       102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~-LW---LYl~E  177 (297)
T COG4785         102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS-LW---LYLNE  177 (297)
T ss_pred             HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH-HH---HHHHH
Confidence            443 34444567777777777777777777777776666666667777777777777777777765322 22   233  


Q ss_pred             HcCChHHHHHHHh-ccccCCCChhHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265          199 AANHPFIAAESLA-KIPDIQHMPATVA-TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR  276 (467)
Q Consensus       199 ~~g~~~~A~~~L~-~~~~~~~~p~~~~-~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~  276 (467)
                      ..=++.+|...|. ++...  +.+.|. .++.+|+..=..+   .+++++...-.++..-...+....+-+|..++..|+
T Consensus       178 ~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~  252 (297)
T COG4785         178 QKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD  252 (297)
T ss_pred             hhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence            2334555555443 22222  223332 3455555332222   233333322111100011233344557888899999


Q ss_pred             hhHHHHHHHHHHHhc
Q 012265          277 EEDASHLFEELVKTH  291 (467)
Q Consensus       277 ~~~A~~~le~ll~~~  291 (467)
                      .++|..+|+-++..+
T Consensus       253 ~~~A~~LfKLaiann  267 (297)
T COG4785         253 LDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999888754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.77  E-value=0.0012  Score=70.86  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=87.7

Q ss_pred             HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265          128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA  207 (467)
Q Consensus       128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~  207 (467)
                      .+..+++.+|...+.++++.+|+...+..+.|..+.+.|++++|..+|+..-...+++...+ -.+..+|...|++++|.
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL-q~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL-QFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-HHHHHHHHHHhhhhHHH
Confidence            35667888899999999999999988888999999999999999977776665566655444 56777888999999999


Q ss_pred             HHHhccccCCCChhHHHHHHHHHHHcCCHHH
Q 012265          208 ESLAKIPDIQHMPATVATLVALKERAGDIDG  238 (467)
Q Consensus       208 ~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~  238 (467)
                      .+|+++....++......++..|.+.+.+.+
T Consensus        98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   98 HLYERANQKYPSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999988766666667777888887776643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.76  E-value=0.0089  Score=56.13  Aligned_cols=191  Identities=10%  Similarity=0.128  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .-+.+.|.-....|++++|...|+.+....|.++-.                                            
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--------------------------------------------   70 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--------------------------------------------   70 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------------------------------------------
Confidence            346778888888999999999998888777732211                                            


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHh--------cCChhHHHHHHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVR--------ENKAGKAEELLGQFAE  180 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~--------~~~~~~A~~~l~~~l~  180 (467)
                            ..+++..+-.++..+++++|+..+++.+..+|.++.+   ..+.+..++.        +.-..+|+.-++.++.
T Consensus        71 ------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~  144 (254)
T COG4105          71 ------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ  144 (254)
T ss_pred             ------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH
Confidence                  1134456777888899999999999999999987653   4466655532        1122468889999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265          181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL  260 (467)
Q Consensus       181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~  260 (467)
                      ++|++.-.. .....+-.       +...         -.+.-+.++..|.+.|.+-.|+.-++.+++-|++    ....
T Consensus       145 ryPnS~Ya~-dA~~~i~~-------~~d~---------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~----t~~~  203 (254)
T COG4105         145 RYPNSRYAP-DAKARIVK-------LNDA---------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD----TSAV  203 (254)
T ss_pred             HCCCCcchh-hHHHHHHH-------HHHH---------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc----ccch
Confidence            999874221 22111111       0000         1123346788999999999999999999887643    2333


Q ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCH
Q 012265          261 SVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI  294 (467)
Q Consensus       261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~  294 (467)
                      ...+..+...|...|-.++|... .+++..+ |+.
T Consensus       204 ~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s  237 (254)
T COG4105         204 REALARLEEAYYALGLTDEAKKT-AKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence            34455577888889888887664 4555555 553

>PRK11906 transcriptional regulator; Provisional

Probab=97.72  E-value=0.0019  Score=65.50  Aligned_cols=162  Identities=14%  Similarity=0.065  Sum_probs=119.0

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHhcc---ccCCCCchHHHHHHHHHHh---------cCChhHHHHHHHHHHHhCCCcH
Q 012265          122 ANRVLLLLHANK---MDQARELVAALP---DMFPDSVMPLLLQAAVLVR---------ENKAGKAEELLGQFAEKLPDKS  186 (467)
Q Consensus       122 ~n~all~l~~~~---~~~A~~~~~~l~---~~~P~~~~~~ll~a~l~~~---------~~~~~~A~~~l~~~l~~~P~~~  186 (467)
                      +.+++-.++.+.   .+.|..+|.+++   ..+|+...++-..|..+..         .....+|.++..++++.+|+|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            556666666554   577888899999   8899998887777765532         2334577889999999999998


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      .+ +..+|.++.-.++++.|...|+++..+.+ .+..+...+.+..-.|+.++|...+++++..-+...     -..++.
T Consensus       339 ~a-~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-----~~~~~~  412 (458)
T PRK11906        339 KI-LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-----KAVVIK  412 (458)
T ss_pred             HH-HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-----HHHHHH
Confidence            75 48999999999999999999999999877 455677888888899999999999999987532211     111222


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          266 EAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      .....|+ ....++|+.+|-+--+.
T Consensus       413 ~~~~~~~-~~~~~~~~~~~~~~~~~  436 (458)
T PRK11906        413 ECVDMYV-PNPLKNNIKLYYKETES  436 (458)
T ss_pred             HHHHHHc-CCchhhhHHHHhhcccc
Confidence            1122343 44677888887654443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.71  E-value=0.032  Score=49.83  Aligned_cols=170  Identities=22%  Similarity=0.148  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH-HHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA-VLVRENKAGKAEELLGQFAEKLPD--KSKIILLAR  193 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~-l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~L  193 (467)
                      .....++.+..+...+.+..+...+.......+.+......... ++...+++++|...+.+++...|.  ......+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  173 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL  173 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence            34567778888888899999999999999888777555555555 788999999999999999887762  322333666


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQHM--PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      +..+...++++.|+..+.+++.....  ......++..+...++++.|...+..++...+.       ....+...+..+
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~  246 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------NAEALYNLALLL  246 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------cHHHHhhHHHHH
Confidence            77788899999999999999876543  456778889999999999999999998875321       111233345556


Q ss_pred             HHCCChhHHHHHHHHHHHhcCC
Q 012265          272 LRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       272 l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ...|.++++...+.+++...|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         247 LELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcc
Confidence            6778899999999999998876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0083  Score=64.09  Aligned_cols=181  Identities=13%  Similarity=0.148  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      ++.--+.-+-..|..|.|+..+..+..        ++-...+++-+|+.++|-++-++     ..+. ++.+.||+.|.+
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~-AAcYhlaR~YEn  979 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE-----SGDK-AACYHLARMYEN  979 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh-----cccH-HHHHHHHHHhhh
Confidence            333344444457888888888877653        34455566778888888776543     2333 345899999999


Q ss_pred             cCChHHHHHHHhcccc----------CCCC-----------hhHHHHHHHHHHHcC-CHHHHHHHHHHH------H----
Q 012265          200 ANHPFIAAESLAKIPD----------IQHM-----------PATVATLVALKERAG-DIDGAAAVLDSA------I----  247 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~----------~~~~-----------p~~~~~l~~ly~~~g-~~~~A~~~l~~a------l----  247 (467)
                      .|++.+|+..|.++-.          .+..           +.-....+..|...| ..+.|.-+|.+|      +    
T Consensus       980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen  980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence            9999999988887631          1111           111112344555554 555565555532      1    


Q ss_pred             --------HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcC
Q 012265          248 --------KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL  319 (467)
Q Consensus       248 --------~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L  319 (467)
                              +.-......+.+ ..++...+.|+..+.+|+.|..++-.+.+..       +-+-....-++.-.+++.+.+
T Consensus      1060 ~tqQf~aL~lIa~DLd~~sD-p~ll~RcadFF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSD-PKLLRRCADFFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred             hhcccHHHHHHHHhcCCCCC-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhc
Confidence                    111111111111 2467778999999999999999887766532       212222344555566777777


Q ss_pred             CCC
Q 012265          320 KPL  322 (467)
Q Consensus       320 ~~~  322 (467)
                      .|-
T Consensus      1132 Tp~ 1134 (1416)
T KOG3617|consen 1132 TPT 1134 (1416)
T ss_pred             CcC
Confidence            775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.67  E-value=0.00066  Score=58.22  Aligned_cols=75  Identities=15%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             CCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhH
Q 012265          148 FPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT  222 (467)
Q Consensus       148 ~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~  222 (467)
                      -|+.... +.-.|...++.|+|.+|++.|+.+..++|..  ...+.|.|+..|..+|++++|+..+++++.+.+ +|.+
T Consensus         5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            3554444 3455666789999999999999999999863  234568999999999999999999999998876 5543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.0027  Score=63.92  Aligned_cols=177  Identities=14%  Similarity=0.124  Sum_probs=131.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      ..+.-...++.+..|+.+++.++..+-.+...++--|..-++.+....|..+..+++..-|.-...+ +-...+-...||
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgN  156 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGN  156 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcc
Confidence            4455666677788888999988888877777777777777788888888888888888888754432 544445556789


Q ss_pred             hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265          203 PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH  282 (467)
Q Consensus       203 ~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~  282 (467)
                      ..-|.++|++.++..+....|...+..-++.+..+.|...+++-+-..       +.+. .|...+.|-.++|...-|..
T Consensus       157 i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-------P~v~-~wikyarFE~k~g~~~~aR~  228 (677)
T KOG1915|consen  157 IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-------PKVS-NWIKYARFEEKHGNVALARS  228 (677)
T ss_pred             cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-------ccHH-HHHHHHHHHHhcCcHHHHHH
Confidence            999999999888877766677777888888888888888888765432       2222 24446888888888888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265          283 LFEELVKTHGSIEALVGLVTTSAHVD  308 (467)
Q Consensus       283 ~le~ll~~~pd~~ala~Lv~a~~~~d  308 (467)
                      +|+.++....|......|+.|++.+.
T Consensus       229 VyerAie~~~~d~~~e~lfvaFA~fE  254 (677)
T KOG1915|consen  229 VYERAIEFLGDDEEAEILFVAFAEFE  254 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99888887766555556666666554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.55  E-value=0.0091  Score=54.50  Aligned_cols=208  Identities=16%  Similarity=0.092  Sum_probs=129.8

Q ss_pred             hcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhh
Q 012265           16 LTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIK   95 (467)
Q Consensus        16 l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~   95 (467)
                      |..-++++|+    -+..++..|..|-..|=.+-|.--|.+.+.+.|+-+.+.-..+.-+. .  ..+...++..+....
T Consensus        54 L~~~~l~~ee----RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~--a~~fdaa~eaFds~~  126 (297)
T COG4785          54 LASRALTDEE----RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-Q--AGNFDAAYEAFDSVL  126 (297)
T ss_pred             HHhccCChHH----HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-h--cccchHHHHHhhhHh
Confidence            3344555554    34556777888888888888888888889998977766643332221 1  234444555444333


Q ss_pred             hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHH
Q 012265           96 EKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELL  175 (467)
Q Consensus        96 ~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l  175 (467)
                      +.+|                +..-..+|+++.+++-|++.-|.+-+...-..+|.++.-.+-. .+-...-+..+|...+
T Consensus       127 ELDp----------------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL  189 (297)
T COG4785         127 ELDP----------------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNL  189 (297)
T ss_pred             ccCC----------------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-HHHHhhCCHHHHHHHH
Confidence            3222                3345678999999999999999999998888899887532221 1112345667887766


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          176 GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-----HMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       176 ~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-----~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .+-.....+.  .+-..+++.|+.+=.-+.+.+.+......+     .-......|+..|...|+.++|..+|+-++..
T Consensus       190 ~qR~~~~d~e--~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         190 KQRAEKSDKE--QWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHhccHh--hhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            6544444322  233456677754433333333333222111     12345677899999999999999999988764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.55  E-value=0.0017  Score=63.09  Aligned_cols=128  Identities=10%  Similarity=0.091  Sum_probs=93.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh-cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~-~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ...+...-..+..+.|+.+|.++.+..+-...+++..|.+-.. .++.+.|.++|+..++.+|.+...+ +..+..++..
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~-~~Y~~~l~~~   83 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW-LEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHh
Confidence            3444555556669999999999986555566666666766455 5666669999999999999998876 7888999999


Q ss_pred             CChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      |+.+.|..+|++++..-.    ...+|.....+-...|+.+.+..+.+++.+.+
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999986422    23466667777777888888877777766653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.0012  Score=59.25  Aligned_cols=72  Identities=22%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                      -+.+++.|++...+..++++.|+..+.+.+.++|.+..++.-.|.+|.+..++++|+.-|.++++.+|....
T Consensus       132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence            355788899999999999999999999999999999888888899999999999999999999999998653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.53  E-value=0.00061  Score=68.93  Aligned_cols=70  Identities=13%  Similarity=-0.010  Sum_probs=45.7

Q ss_pred             cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265          147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      .+|++..+++.++.+|...|+|++|+..|+++++.+|++...  +++.+|-+|..+|++++|+..|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356666666666666666677777777777777777666531  3466666777777777777777766653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.0041  Score=55.82  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265          170 KAEELLGQFAEKLPDKSK--IILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVL  243 (467)
Q Consensus       170 ~A~~~l~~~l~~~P~~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l  243 (467)
                      +.+..++++...+|.+.-  ...+.+|..+...|++++|+..|+..+....    .+-+-..|+.+..++|.+++|+..|
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            556677777777766533  2347789999999999999999998885432    2233457899999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHH-HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          244 DSAIKWWLNAMTEDNKLSV-IMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~-ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +....         +.+.. ....-|.+++..|+.++|...|++++..+++
T Consensus       150 ~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         150 DTIKE---------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             hcccc---------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            86542         11111 1122499999999999999999999998644

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.0062  Score=56.12  Aligned_cols=171  Identities=12%  Similarity=0.116  Sum_probs=108.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHHc-CChHHHHHHHhccccCC------C-ChhH
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI-----ILLARAQVAAAA-NHPFIAAESLAKIPDIQ------H-MPAT  222 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~-----~~l~Laql~~~~-g~~~~A~~~L~~~~~~~------~-~p~~  222 (467)
                      +..|.-.++..+..+|+..|+.+++.+-+-...     .+..+|.+|... .++++|+..|+.+.+.-      . ....
T Consensus        77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC  156 (288)
T KOG1586|consen   77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC  156 (288)
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence            445555667778889999999888876543221     134678899766 89999999999986421      1 1112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC------HHH
Q 012265          223 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------IEA  296 (467)
Q Consensus       223 ~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd------~~a  296 (467)
                      +...+.+-.+.+++.+|+..|++...+--++.----.....++..|.+++..+|.-.+...+++-...+|.      -..
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckf  236 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKF  236 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHH
Confidence            33455666677899999999998765321100000112334566788889889998888889988888885      133


Q ss_pred             HHHHHHHhccCChhHHHHHHhcCCCCCCCCCcC
Q 012265          297 LVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVD  329 (467)
Q Consensus       297 la~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vD  329 (467)
                      +.-|+.+....|.   +.+......++.|+.+|
T Consensus       237 lk~L~~aieE~d~---e~fte~vkefDsisrLD  266 (288)
T KOG1586|consen  237 LKDLLDAIEEQDI---EKFTEVVKEFDSISRLD  266 (288)
T ss_pred             HHHHHHHHhhhhH---HHHHHHHHhhhccchHH
Confidence            5555555554443   34444344444454444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0036  Score=58.01  Aligned_cols=131  Identities=20%  Similarity=0.177  Sum_probs=99.2

Q ss_pred             CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265           21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ  100 (467)
Q Consensus        21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~  100 (467)
                      ++++|..- -.|..-|.|.-+.++|++.||..-|..++..           ..||..-.++.++.=  -.+.        
T Consensus       169 lsddeKmk-av~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----------l~~L~lkEkP~e~eW--~eLd--------  226 (329)
T KOG0545|consen  169 LSDDEKMK-AVPVLHQEGNRLFKLGRYKEASSKYREAIIC-----------LRNLQLKEKPGEPEW--LELD--------  226 (329)
T ss_pred             CCchHhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHHHHH-----------HHHHHhccCCCChHH--HHHH--------
Confidence            56666554 3477789999999999999999999987642           235433333332210  1111        


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265          101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE  180 (467)
Q Consensus       101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~  180 (467)
                                    .+...+++|.|..+|..+.|-++++.+..+++.+|+++-+++-.|..+..-=+..+|..-|..+++
T Consensus       227 --------------k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~  292 (329)
T KOG0545|consen  227 --------------KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE  292 (329)
T ss_pred             --------------HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence                          123458899999999999999999999999999999999999888888777788899999999999


Q ss_pred             hCCCcHH
Q 012265          181 KLPDKSK  187 (467)
Q Consensus       181 ~~P~~~~  187 (467)
                      .+|.-..
T Consensus       293 ldpslas  299 (329)
T KOG0545|consen  293 LDPSLAS  299 (329)
T ss_pred             cChhhHH
Confidence            9987433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.39  E-value=0.02  Score=51.21  Aligned_cols=167  Identities=21%  Similarity=0.192  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccc--cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH-H
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPD--MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ-V  196 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~--~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq-l  196 (467)
                      .....+..+...+.+..+...+.....  ..+.........+..+...+++..++..+...+...+..... ...... +
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-EALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH-HHHHHHHH
Confidence            455667778888889888888888776  566666667777777888899999999999999977765332 244455 8


Q ss_pred             HHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265          197 AAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL  272 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l  272 (467)
                      +...|+++.|...+.+++....    .......+...+...++++.|+..+..++..+...      ....+..++..+.
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~  213 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYL  213 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHH
Confidence            9999999999999999865332    12233444555778899999999999998764220      1234555788899


Q ss_pred             HCCChhHHHHHHHHHHHhcCC
Q 012265          273 RHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       273 ~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ..++++.|...+..++...|+
T Consensus       214 ~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         214 KLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HcccHHHHHHHHHHHHhhCcc
Confidence            999999999999999998876

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.37  E-value=0.00027  Score=54.25  Aligned_cols=61  Identities=23%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccC----CC-Chh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDI----QH-MPA---TVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~----~~-~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      +..+|.+|..+|++++|+..|++++++    .. .+.   ++..++.+|..+|++++|+.+++++++.+
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            478888999999999999999988753    11 222   35678999999999999999999988764

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.36  E-value=0.06  Score=54.30  Aligned_cols=134  Identities=10%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH--HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA--VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~--va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -+.+++|+++|+||++.+|..+|.++.....+.+...-  +..+-++..- .   .+.+..|+....          .++
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-f---l~nld~Me~~l~----------~l~   72 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-F---LNNLDLMEKQLM----------ELR   72 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-H---HhhHHHHHHHHH----------HHH
Confidence            45789999999999999999999999887544432221  2222111000 0   011111111100          011


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-------------HH--HHHHHHHHhcCChhHHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-------------PL--LLQAAVLVRENKAGKAEEL  174 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-------------~~--ll~a~l~~~~~~~~~A~~~  174 (467)
                      ....  ...-+.+=.+++.++.+.++.|.+.+......--++..             .+  -+.|..++..|.+.++..+
T Consensus        73 ~~~~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i  150 (549)
T PF07079_consen   73 QQFG--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI  150 (549)
T ss_pred             HhcC--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence            1111  11124455678888888888888777755433111110             11  1345566778888888877


Q ss_pred             HHHHHHh
Q 012265          175 LGQFAEK  181 (467)
Q Consensus       175 l~~~l~~  181 (467)
                      +.+.+.+
T Consensus       151 Ln~i~~~  157 (549)
T PF07079_consen  151 LNRIIER  157 (549)
T ss_pred             HHHHHHH
Confidence            7776654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0073  Score=58.44  Aligned_cols=163  Identities=11%  Similarity=0.066  Sum_probs=123.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcH--HHHHHHHHHHHHHc
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKS--KIILLARAQVAAAA  200 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~--~~~~l~Laql~~~~  200 (467)
                      .+.+....|++.+|...-++++..+|.+..++-+.-.++.-.|+...-...+++++.+ +|+-+  .+++-.++.-+.+.
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3556677899999999999999999999888777667777788888777788888877 66542  23455677788899


Q ss_pred             CChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265          201 NHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED  279 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~  279 (467)
                      |-|++|...-.++++++.... ..-.++.++...|++.++.+...+--..|+..--  -..-..|. .|.++...+.|+.
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m--lasHNyWH-~Al~~iE~aeye~  265 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM--LASHNYWH-TALFHIEGAEYEK  265 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH--HHhhhhHH-HHHhhhcccchhH
Confidence            999999999999998875332 2446788999999999999998877766653110  01111233 5888999999999


Q ss_pred             HHHHHHHHHH
Q 012265          280 ASHLFEELVK  289 (467)
Q Consensus       280 A~~~le~ll~  289 (467)
                      |.++|..-+-
T Consensus       266 aleIyD~ei~  275 (491)
T KOG2610|consen  266 ALEIYDREIW  275 (491)
T ss_pred             HHHHHHHHHH
Confidence            9999987553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.22  E-value=0.028  Score=56.29  Aligned_cols=171  Identities=15%  Similarity=0.018  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccc----CCCCchHHHHHHHHHHh---cCChhHHHHHHHHHH-HhCCCcHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDM----FPDSVMPLLLQAAVLVR---ENKAGKAEELLGQFA-EKLPDKSKIIL  190 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~----~P~~~~~~ll~a~l~~~---~~~~~~A~~~l~~~l-~~~P~~~~~~~  190 (467)
                      .+..|..+.|-..++|+.=+++++.+...    .++........|..+.+   .|+.++|+.++..++ ...+.+++.+ 
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~-  220 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL-  220 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH-
Confidence            35567788888888999999999988766    45566667778888888   999999999999954 4455555543 


Q ss_pred             HHHHHHHHH---------cCChHHHHHHHhccccCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------h
Q 012265          191 LARAQVAAA---------ANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN------A  253 (467)
Q Consensus       191 l~Laql~~~---------~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~------~  253 (467)
                      -.+|++|..         ....++|+.+|.+..+++.  .+|+  .++.|+...|...+....+++....+..      .
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI--N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI--NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            567888752         2347899999999987764  4554  3455666666655554444443311110      1


Q ss_pred             ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ......+ +....++.+.+-.|++++|...++++++..|+
T Consensus       299 ~~~~~dY-Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  299 LEKMQDY-WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccccccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            1111222 11222344556689999999999999998865

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.20  E-value=0.0081  Score=62.76  Aligned_cols=119  Identities=15%  Similarity=0.080  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHcCChHHHHHH
Q 012265          133 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---PDKSKIILLARAQVAAAANHPFIAAES  209 (467)
Q Consensus       133 ~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~---P~~~~~~~l~Laql~~~~g~~~~A~~~  209 (467)
                      ..+.|.++++.+...+|++....++.|.++...|+.++|+..++.++...   |.-...+.+-++-.++-+.+|++|...
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            47899999999999999999989999999999999999999999877532   222223457788889999999999999


Q ss_pred             HhccccCCC-ChhHH-HHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 012265          210 LAKIPDIQH-MPATV-ATLVALKERAGDI-------DGAAAVLDSAIKWWL  251 (467)
Q Consensus       210 L~~~~~~~~-~p~~~-~~l~~ly~~~g~~-------~~A~~~l~~al~~~~  251 (467)
                      +..+.+... +++++ +..+.+|...|+.       ++|..+|.++-.+-.
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            999987543 56654 4567888889999       788888887776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.005  Score=60.98  Aligned_cols=268  Identities=13%  Similarity=0.009  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH----HHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV----AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v----a~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      .+-+.-++++|+...-+..|+.++.....|..++..    ++|.+..+.   ++..+++.-.       ....++..+-.
T Consensus        21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~---DY~kAl~yH~-------hDltlar~lgd   90 (639)
T KOG1130|consen   21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK---DYEKALKYHT-------HDLTLARLLGD   90 (639)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh---hHHHHHhhhh-------hhHHHHHHhcc
Confidence            456888999999999999999999987777665531    222222222   2333332211       11122222323


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---C---CchHHHHHHHHHHhcCC-------------hhHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---D---SVMPLLLQAAVLVRENK-------------AGKA  171 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~---~~~~~ll~a~l~~~~~~-------------~~~A  171 (467)
                      ++..   .-..-|.+..+--.|.|++|..++.+-+...-   +   ...+++..+.+|...|+             .+++
T Consensus        91 klGE---AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev  167 (639)
T KOG1130|consen   91 KLGE---AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV  167 (639)
T ss_pred             hhcc---ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence            3321   11234666677777888888877765432110   0   11234445555543222             1233


Q ss_pred             HHHHHHHHHhCCCcH-------H-----HHHHHHHHHHHHcCChHHHHHHHhccccCC--C-----ChhHHHHHHHHHHH
Q 012265          172 EELLGQFAEKLPDKS-------K-----IILLARAQVAAAANHPFIAAESLAKIPDIQ--H-----MPATVATLVALKER  232 (467)
Q Consensus       172 ~~~l~~~l~~~P~~~-------~-----~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~-----~p~~~~~l~~ly~~  232 (467)
                      ...|+.+++.+-++.       +     -++-.|+..|.-.|+|++|+..-+.=+.+.  +     .....+.|+..|.-
T Consensus       168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence            333333333221111       1     112345556667889999998765444321  1     22356789999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CC----HHHHHHHHHHhc
Q 012265          233 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS----IEALVGLVTTSA  305 (467)
Q Consensus       233 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd----~~ala~Lv~a~~  305 (467)
                      .|+++.|++.|...+....+.........+ -..+|..|.-..+++.|+.++.+-+++-   .|    ..+...|..+|.
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQs-cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQS-CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999999999999877654332211112222 3347999988889999999999988764   23    355666777775


Q ss_pred             cCC-hhHHHHHH
Q 012265          306 HVD-VDKAESYE  316 (467)
Q Consensus       306 ~~d-~~kA~~l~  316 (467)
                      .+. -++|.-++
T Consensus       327 alg~h~kAl~fa  338 (639)
T KOG1130|consen  327 ALGEHRKALYFA  338 (639)
T ss_pred             hhhhHHHHHHHH
Confidence            444 46665443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.17  E-value=0.0011  Score=45.04  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV   70 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v   70 (467)
                      +++++|.+|..+|++++|+.+|+++++.+|+|..+...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            57899999999999999999999999999999987764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0081  Score=55.38  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=94.9

Q ss_pred             HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC----C-CcHHHHHHHHHHHHHHcC
Q 012265          127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL----P-DKSKIILLARAQVAAAAN  201 (467)
Q Consensus       127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~----P-~~~~~~~l~Laql~~~~g  201 (467)
                      +....+++++|.+++.+...              ++-..++|..|-..+.++.+.+    . ++.... +.-|.-..+.+
T Consensus        23 lfgg~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~-YveA~~cykk~   87 (288)
T KOG1586|consen   23 LFGGSNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT-YVEAANCYKKV   87 (288)
T ss_pred             ccCCCcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHhhcc
Confidence            44456678999888876542              2223445555555544444322    1 111111 22333334566


Q ss_pred             ChHHHHHHHhccccCC-----CCh--hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          202 HPFIAAESLAKIPDIQ-----HMP--ATVATLVALKERA-GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~-----~~p--~~~~~l~~ly~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      +..+|+.+|++.+++-     +.-  .....++.+|... .+++.|+..|+++.+||+......... ..+..++.+--.
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN-KC~lKvA~yaa~  166 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN-KCLLKVAQYAAQ  166 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH-HHHHHHHHHHHH
Confidence            8888888888776531     111  2245678888876 899999999999999997533222222 345567888888


Q ss_pred             CCChhHHHHHHHHHHHhc
Q 012265          274 HGREEDASHLFEELVKTH  291 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~  291 (467)
                      .|+|.+|+++|+++....
T Consensus       167 leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.15  E-value=0.0012  Score=44.69  Aligned_cols=41  Identities=29%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      +++..|.+|...|++++|+++|+++++.+|++.... ..||+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~-~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW-RALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH-HHhhh
Confidence            456667777778888888888888888888777643 55554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.15  E-value=0.054  Score=53.14  Aligned_cols=249  Identities=14%  Similarity=0.040  Sum_probs=150.2

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhc-cCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVAL-KGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      .+-+.+.|.-+..+.+++.|+....+.|.. -+|..-.++...-+... .+...+..++........       .+-.++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~-l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-------~a~~~~   77 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEK-LSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-------TARELE   77 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-------HHHHHH
Confidence            345566777788889999999998888875 33444444322222211 112233344333221111       111111


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVA---ALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~---~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                      +-+  .+ -..++|.+.-+-..-++.+++....   .+....|+..  ...+..+..+...+.++++++.|+.++..--+
T Consensus        78 ds~--~~-~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~  154 (518)
T KOG1941|consen   78 DSD--FL-LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN  154 (518)
T ss_pred             HHH--HH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            000  01 1245565554444334444444333   4444444321  23456667778889999999999998875322


Q ss_pred             cHH-----HHHHHHHHHHHHcCChHHHHHHHhccccCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          185 KSK-----IILLARAQVAAAANHPFIAAESLAKIPDIQ-----------HMPATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       185 ~~~-----~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-----------~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      +.+     .++..|+.+|....++++|+-...++.++-           +.-..+..++-.|..+|+..+|.+..+++..
T Consensus       155 ~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k  234 (518)
T KOG1941|consen  155 NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK  234 (518)
T ss_pred             cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            211     245789999999999999998888876421           1122345667777889999999999998876


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .--.. ++..-....+.-+|++|-..|+.+.|..-|+++....
T Consensus       235 lal~~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  235 LALQH-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHh-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            54222 2223333445668999999999999999999998764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.003  Score=56.85  Aligned_cols=94  Identities=19%  Similarity=0.083  Sum_probs=79.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      .+.-++..|.|++|...|..++..-|....     .+...|..+++.++++.|+.-+.++++.+|....++ ...|.+|.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl-~RRAeaye  179 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL-ERRAEAYE  179 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH-HHHHHHHH
Confidence            355677889999999999999888876432     233567778999999999999999999999988765 77799999


Q ss_pred             HcCChHHHHHHHhccccCCC
Q 012265          199 AANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~  218 (467)
                      +..+|++|+.-|.++++.++
T Consensus       180 k~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCc
Confidence            99999999999999998765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.12  E-value=0.0048  Score=60.00  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=99.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-cCChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA-ANHPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDG  238 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~-~g~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~  238 (467)
                      ...+.+..+.|-.++.++....+-.. .++...|.+... .++.+-|..+|+..+.. ..++.+|...+..+...|+.+.
T Consensus        10 ~~~r~~g~~~aR~vF~~a~~~~~~~~-~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~   88 (280)
T PF05843_consen   10 FMRRTEGIEAARKVFKRARKDKRCTY-HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN   88 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCS-T-HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHhCChHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence            34455668899999999985443333 345777888666 56666699999999863 3477888888899999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHV  307 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~  307 (467)
                      |..+|++++..    .+.+.....+|.....|-...|+.+....+++++.+..|+...+..++.-|...
T Consensus        89 aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry~~~  153 (280)
T PF05843_consen   89 ARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRYSFL  153 (280)
T ss_dssp             HHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT-BT
T ss_pred             HHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            99999999864    222221455777778888889999999999999999888755555555444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.10  E-value=0.14  Score=49.67  Aligned_cols=243  Identities=14%  Similarity=0.099  Sum_probs=133.5

Q ss_pred             HHhCChHHHHHHHHHHhccC----CCchHHHHHHHhhh-hhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCC--C
Q 012265           42 QLLGNTQEAFGAYTDIIKRN----LADESSFAVAVNNL-VALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRL--S  113 (467)
Q Consensus        42 ~~~G~~~eA~~~y~~~l~~~----p~d~~~~~va~nnl-~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL--~  113 (467)
                      ..+|+++-|...|.++-...    |+....+....-|+ ..+-... ++.++..-+.+..+-.    ......+..-  .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l----~~~~~~~~~~~~~   79 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL----EKPGKMDKLSPDG   79 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----HhhhhccccCCcH
Confidence            47899999999998885543    32222222111111 1111123 5566666555432210    0000000000  1


Q ss_pred             HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      ...+..+....+..++..+.   .+.|...++.+...+|+.+...++...++.+.++.+.+.+.|.+++...+-....+.
T Consensus        80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~  159 (278)
T PF08631_consen   80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHH
Confidence            12344566677888888777   456777888888899998888878888887888999999999999987541111222


Q ss_pred             HHHHHH-HHHcCChHHHHHHHhccccC--CCChh-HH--HHHHHHHHHcC--C------HHHHHHHHHHHHHHHHHhcc-
Q 012265          191 LARAQV-AAAANHPFIAAESLAKIPDI--QHMPA-TV--ATLVALKERAG--D------IDGAAAVLDSAIKWWLNAMT-  255 (467)
Q Consensus       191 l~Laql-~~~~g~~~~A~~~L~~~~~~--~~~p~-~~--~~l~~ly~~~g--~------~~~A~~~l~~al~~~~~~~~-  255 (467)
                      ..+..+ .+.......|...+..++-.  .+.++ +.  ..+..++...+  +      .+....++............ 
T Consensus       160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~  239 (278)
T PF08631_consen  160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA  239 (278)
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence            333333 12345567788888777632  22332 22  12223333322  2      22233333322211111000 


Q ss_pred             -CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265          256 -EDNKLSVIMQEAASFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       256 -~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll  288 (467)
                       .-.....++...|.-....++|++|...|+-++
T Consensus       240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence             001233455556888999999999999999776

It is also involved in sporulation [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.10  E-value=0.0017  Score=65.68  Aligned_cols=68  Identities=7%  Similarity=-0.080  Sum_probs=60.1

Q ss_pred             hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hh---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-PA---TVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .+|++... ++.+|.+|...|+|++|+.+|+++++++++ +.   .++.++.+|..+|++++|+..|++|+..
T Consensus        70 ~dP~~a~a-~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAED-AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46888776 499999999999999999999999998774 32   4789999999999999999999999985

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.08  E-value=0.0056  Score=51.33  Aligned_cols=92  Identities=23%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C--hhHHHHHHHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M--PATVATLVALKE  231 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~--p~~~~~l~~ly~  231 (467)
                      +++-.+...|+.+.|++.+.+++...|+...+ +...||.|.-+|+.++|+.-|++++++..   .  -..+...+.+|.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSa-yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASA-YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHh-hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            44555567788888888888888888888765 47888999889999999999998887542   1  123445688999


Q ss_pred             HcCCHHHHHHHHHHHHHH
Q 012265          232 RAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       232 ~~g~~~~A~~~l~~al~~  249 (467)
                      .+|+.+.|..-|+.|...
T Consensus       127 l~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HhCchHHHHHhHHHHHHh
Confidence            999999999999887754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.06  E-value=0.011  Score=63.91  Aligned_cols=122  Identities=15%  Similarity=0.091  Sum_probs=90.5

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA  241 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~  241 (467)
                      +..+++.+|++.+.++++++|+..-+ ...-|-++++.|++++|..+|+..-.... +...+..+..+|..+|++++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45789999999999999999998654 46778899999999999999988765433 44567789999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +|+.++..|+.        ..++..+-..|.+-+.|.+-...=-++.+..|.
T Consensus        99 ~Ye~~~~~~P~--------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen   99 LYERANQKYPS--------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             HHHHHHhhCCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999986521        123333445566766665433333333334554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.011  Score=55.39  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=102.1

Q ss_pred             hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265           25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL  104 (467)
Q Consensus        25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  104 (467)
                      +-+.-+..+..-++.+++-+|.+.-.+..|.++++.+|.....+.-.... ++. +.++...+-..+++..         
T Consensus       171 lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr-~~M-Q~GD~k~a~~yf~~ve---------  239 (366)
T KOG2796|consen  171 LWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR-ISM-QIGDIKTAEKYFQDVE---------  239 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH-HHH-hcccHHHHHHHHHHHH---------
Confidence            33444566777788899999999999999999999885433333212111 111 2334444444443221         


Q ss_pred             HHHhhcCCCHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          105 ARVLDLRLSPKQR-EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       105 ~~~l~~kL~~~q~-~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                        ....+|..-|. ..+..|.+.+++-++++..|...+.+++..+|.++.+.-.+|.++.-.|+..+|++.++.++.+.|
T Consensus       240 --k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  240 --KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             --HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence              11123332233 345778899999999999999999999999999988888888888888999999999999988888


Q ss_pred             Cc
Q 012265          184 DK  185 (467)
Q Consensus       184 ~~  185 (467)
                      ..
T Consensus       318 ~~  319 (366)
T KOG2796|consen  318 RH  319 (366)
T ss_pred             cc
Confidence            63

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.03  E-value=0.014  Score=59.00  Aligned_cols=148  Identities=16%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc---CCC--Chh-----HHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD---IQH--MPA-----TVATL  226 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~---~~~--~p~-----~~~~l  226 (467)
                      ..+..|++..+..-+....+.+....-+.+..+ +..+|++...|++..|...|...--   -.+  .|.     ++..|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l-~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl  289 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMAL-LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL  289 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHH-HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence            344445566666666666666666655666655 7889999999999999999987631   011  222     34678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH-HHHH---h-cc------CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCH
Q 012265          227 VALKERAGDIDGAAAVLDSAIK-WWLN---A-MT------EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI  294 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~-~~~~---~-~~------~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~  294 (467)
                      +-++.++|.+..+.-+|.+|+. ...+   . .+      .....-.++..+|..++..|++-.|...|.+++..+ .++
T Consensus       290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence            8899999999999999999995 2221   1 00      011223467789999999999999999999999987 567


Q ss_pred             HHHHHHHHHhc
Q 012265          295 EALVGLVTTSA  305 (467)
Q Consensus       295 ~ala~Lv~a~~  305 (467)
                      ..|.+|.-|..
T Consensus       370 rlWLRlAEcCi  380 (696)
T KOG2471|consen  370 RLWLRLAECCI  380 (696)
T ss_pred             HHHHHHHHHHH
Confidence            78888877653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.01  E-value=0.0044  Score=60.05  Aligned_cols=95  Identities=9%  Similarity=-0.040  Sum_probs=70.0

Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~  270 (467)
                      -.|.-|+.||+|++|+.+|.+.+.+.+ +|-+....+..|.++.++..|..-.+.|+...+       .+..++.+-+..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-------~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-------LYVKAYSRRMQA  174 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-------HHHHHHHHHHHH
Confidence            346778888888888888888887765 777777778888888888888777777776532       222334344666


Q ss_pred             HHHCCChhHHHHHHHHHHHhcCC
Q 012265          271 KLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       271 ~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      -..+|...+|.+-++.+|++.|+
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcc
Confidence            67788888888888888888875

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.97  E-value=0.051  Score=53.92  Aligned_cols=151  Identities=11%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             HHHhccccCCCCchHHHHHHHHHHhcCC------------hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265          140 LVAALPDMFPDSVMPLLLQAAVLVRENK------------AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA  207 (467)
Q Consensus       140 ~~~~l~~~~P~~~~~~ll~a~l~~~~~~------------~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~  207 (467)
                      .+++.++.+|.++.+++-.+......-.            .+.-+.+|+++++.+|++...+ +.+-.++.+....++..
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~-l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLL-LGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhCCHHHHH
Confidence            4566677899999887755543321111            2345789999999999887643 66667777777888888


Q ss_pred             HHHhccccCCC-ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhccC-----------CchHHHHHHHHHHHHH
Q 012265          208 ESLAKIPDIQH-MPATVATLVALKER---AGDIDGAAAVLDSAIKWWLNAMTE-----------DNKLSVIMQEAASFKL  272 (467)
Q Consensus       208 ~~L~~~~~~~~-~p~~~~~l~~ly~~---~g~~~~A~~~l~~al~~~~~~~~~-----------~~~~~~ll~~la~~~l  272 (467)
                      ..+++++...+ ++.+|.........   .-.++.....|.+++........+           ...+..++..++.|+.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            88888876543 66776544333332   225678888888888765443221           1234556777899999


Q ss_pred             HCCChhHHHHHHHHHHHhc
Q 012265          273 RHGREEDASHLFEELVKTH  291 (467)
Q Consensus       273 ~~g~~~~A~~~le~ll~~~  291 (467)
                      +.|..+.|+.+++.+++.+
T Consensus       166 ~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  166 QAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HCCchHHHHHHHHHHHHHH
Confidence            9999999999999999986

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.97  E-value=0.15  Score=55.50  Aligned_cols=243  Identities=19%  Similarity=0.109  Sum_probs=145.3

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC-------chHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHH
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA-------DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNF  102 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~-------d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~  102 (467)
                      -....++.|+..+-+++++||..+..++...-+.       +.-.-+.+..+++.+++ .++..+.+........     
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~-~~~e~a~~lar~al~~-----  487 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR-GDPEEAEDLARLALVQ-----  487 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh-----
Confidence            3344567899999999999999999998776442       11111223345555544 3334444333322111     


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHHHhcCChhHHHH---
Q 012265          103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVLVRENKAGKAEE---  173 (467)
Q Consensus       103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~~~~~~~~~A~~---  173 (467)
                           + .......+.++..+.+.+..-.|++++|........+.   +-..   ..+.+..+.++..+|+...|+.   
T Consensus       488 -----L-~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~  561 (894)
T COG2909         488 -----L-PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKA  561 (894)
T ss_pred             -----c-ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                 1 12233456677888899999999999999777755433   2221   2234456777888885544432   


Q ss_pred             ---HHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC----CCh----hHHHHHHHHHHHcCCHHHHHHH
Q 012265          174 ---LLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ----HMP----ATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       174 ---~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~~p----~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                         +..+.+...|-+.-. ....++++...-+++.+.......+++.    +.+    .....|+.++...|+.++|...
T Consensus       562 ~~~~~~q~l~q~~~~~f~-~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~  640 (894)
T COG2909         562 FNLIREQHLEQKPRHEFL-VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ  640 (894)
T ss_pred             HHHHHHHHhhhcccchhH-HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence               222334444544333 3566777766666888777777666432    122    1234788999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHH-HHHHHCCChhHHHHHHHH
Q 012265          243 LDSAIKWWLNAMTEDNKLSVIMQEAA-SFKLRHGREEDASHLFEE  286 (467)
Q Consensus       243 l~~al~~~~~~~~~~~~~~~ll~~la-~~~l~~g~~~~A~~~le~  286 (467)
                      +........+.. ....+........ .+.+..|++++|...+.+
T Consensus       641 l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         641 LDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            998877664432 1222222222112 223668999999888777

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.97  E-value=0.046  Score=54.08  Aligned_cols=182  Identities=19%  Similarity=0.067  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH--HHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV--LVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l--~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      ...|..-|++-.+...+..|+++.|++.|+.++. +|+...+- +.+..  ..+.|..+-|..+-+.+..+-|.-.-.. 
T Consensus       115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllG-LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~-  191 (531)
T COG3898         115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLG-LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA-  191 (531)
T ss_pred             hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHh-HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH-
Confidence            4456777888888889999999999999998874 66543321 11111  1368888889988888888888865544 


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCC-CChh-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQ-HMPA-------TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV  262 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~-------~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~  262 (467)
                      ...-.-.+..|+++.|+.++..-.... ..+.       ++.+--..-.-.-+...|...-.+++..-      ++....
T Consensus       192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~------pdlvPa  265 (531)
T COG3898         192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA------PDLVPA  265 (531)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CccchH
Confidence            444455678899999999988664321 1111       11111111111234555555544544431      112222


Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS  304 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~  304 (467)
                      .+. .+..|++.|+..++..+++.+.+.+|+++....++.+-
T Consensus       266 av~-AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar  306 (531)
T COG3898         266 AVV-AARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRAR  306 (531)
T ss_pred             HHH-HHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhc
Confidence            333 58889999999999999999999999886666665554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.93  E-value=0.0018  Score=40.81  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD   64 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d   64 (467)
                      .++..+|.++..+|++++|+..|++++..+|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.92  E-value=0.034  Score=59.67  Aligned_cols=186  Identities=16%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      ..+.|....|-+++|..++.+-..        +-++-.+|...|.|++|.++-+.-=..|=.+   -++..|+-+...++
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~D  873 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRD  873 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhcc
Confidence            457777788888888888776543        1123345667888888887655322222112   24677888888899


Q ss_pred             hHHHHHHHhcccc-------------------C--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------
Q 012265          203 PFIAAESLAKIPD-------------------I--QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM-------  254 (467)
Q Consensus       203 ~~~A~~~L~~~~~-------------------~--~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~-------  254 (467)
                      .+.|++.|++...                   +  ..++.++...+..+...|+.+.|+.+|..|-.||....       
T Consensus       874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK  953 (1416)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence            9999999998731                   0  12456677778888899999999999999988875411       


Q ss_pred             -------c-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC--------C-HHHHHHHHHHhccCChhHHHHHHh
Q 012265          255 -------T-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG--------S-IEALVGLVTTSAHVDVDKAESYEK  317 (467)
Q Consensus       255 -------~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p--------d-~~ala~Lv~a~~~~d~~kA~~l~~  317 (467)
                             . ...+. .+-..+|..|...|+..+|+..|.++....+        | .+-+++|.+.....|+-.|..|-+
T Consensus       954 ~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen  954 TDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred             chHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence                   0 11122 2344478999999999999999888765432        2 356777777777777655555555


Q ss_pred             cCC
Q 012265          318 RLK  320 (467)
Q Consensus       318 ~L~  320 (467)
                      .++
T Consensus      1033 e~g 1035 (1416)
T KOG3617|consen 1033 ELG 1035 (1416)
T ss_pred             Hcc
Confidence            554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.88  E-value=0.018  Score=60.25  Aligned_cols=151  Identities=21%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             HcCCHHHHHHHHHhccccCCCC--chHHH-HHHH---H--H--H--hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          130 HANKMDQARELVAALPDMFPDS--VMPLL-LQAA---V--L--V--RENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       130 ~~~~~~~A~~~~~~l~~~~P~~--~~~~l-l~a~---l--~--~--~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..|+.+.+.+.+....+ .++-  +.+.+ +.+.   +  .  .  .....+.|.++|.....++|+..-. .+..|+++
T Consensus       200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf-l~~~gR~~  277 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF-LFFEGRLE  277 (468)
T ss_pred             cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHH
Confidence            56888888888887665 3332  12211 1110   0  0  1  3556678999999999999998754 48889999


Q ss_pred             HHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhccCCchHHHHHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIKW--WLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~--~~~~~~~~~~~~~ll~~la~~  270 (467)
                      ..+|+.++|+..|+++++...     .--.+..++..+.-++++++|...+......  |.      ..+  .....|.+
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~--Y~Y~~a~c  349 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAF--YAYLAAAC  349 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHH--HHHHHHHH
Confidence            999999999999998875332     1123557888999999999999999988753  21      122  22335888


Q ss_pred             HHHCCCh-------hHHHHHHHHHHHh
Q 012265          271 KLRHGRE-------EDASHLFEELVKT  290 (467)
Q Consensus       271 ~l~~g~~-------~~A~~~le~ll~~  290 (467)
                      +...|+.       ++|..+|.++-..
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            9999999       7777777776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.096  Score=50.22  Aligned_cols=128  Identities=15%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH--HHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA--QVA  197 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La--ql~  197 (467)
                      ..+..+.-.+..|++.+|...|..++...|++..+.+..|..++..|+.+.|..+|..+-....++.  .+...+  .++
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~--~~~l~a~i~ll  213 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA--AHGLQAQIELL  213 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH--HHHHHHHHHHH
Confidence            4566788888999999999999999999999999999999999999999999888876543333321  112222  333


Q ss_pred             HHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .+.....+....-.++-....+......++..|...|+.++|...|-..+..
T Consensus       214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3433333332222222221126677778999999999999998887766654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.026  Score=52.98  Aligned_cols=130  Identities=12%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-------CCCChhHHHHHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-------IQHMPATVATLVAL  229 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-------~~~~p~~~~~l~~l  229 (467)
                      ..+..+.-.|.|.-...++.++++.+|+....+.-.|+.+.++.|+.+.|...++.+..       +.+.--+....+.+
T Consensus       182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i  261 (366)
T KOG2796|consen  182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL  261 (366)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence            33444556677777777777777777543334446777788888888877777775532       22233344556677


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          230 KERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       230 y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      |..++++.+|...+.+.+...       +........-|.+++-.|+..+|++.++.++...|.
T Consensus       262 ~lg~nn~a~a~r~~~~i~~~D-------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  262 HLGQNNFAEAHRFFTEILRMD-------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             eecccchHHHHHHHhhccccC-------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            777777777777776665431       111112233456666777888888888888877764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0033  Score=39.73  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD   64 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d   64 (467)
                      -+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999964

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.60  E-value=0.062  Score=46.48  Aligned_cols=115  Identities=15%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKA-EELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A-~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      ..+......+..+.+...+.+++..+.+....-+.       ...|-.. ...+....      ... ...++..+...|
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~~------~~~-~~~l~~~~~~~~   76 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLRELY------LDA-LERLAEALLEAG   76 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHHH------HHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHHH------HHH-HHHHHHHHHhcc
Confidence            34555566777788888888777766443221100       0111111 11111111      112 245666667777


Q ss_pred             ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          202 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ++++|+..+++++..++ +..++..+..+|..+|+..+|+.+|++....+.
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            77777777777776554 455666677777777777777777776655554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.58  E-value=0.0027  Score=40.45  Aligned_cols=32  Identities=13%  Similarity=-0.045  Sum_probs=27.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265          175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAA  207 (467)
Q Consensus       175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~  207 (467)
                      |+++++.+|++..+. +.||.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~-~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAY-NNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHH-HHHHHHHHHCcCHHhhc
Confidence            678899999998764 89999999999999986

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.19  Score=46.98  Aligned_cols=175  Identities=15%  Similarity=0.050  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..+.+-|..|....+++.|...+.++.+-..++...++                 +-+.++++.-       ++..+ ++
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-----------------AAKayEqaam-------Lake~-~k   86 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-----------------AAKAYEQAAM-------LAKEL-SK   86 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-----------------HHHHHHHHHH-------HHHHH-HH
Confidence            44566677777788888888877777755443333332                 2222221100       00001 11


Q ss_pred             CCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH---
Q 012265          112 LSPKQREAIYANR-VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK---  187 (467)
Q Consensus       112 L~~~q~~~l~~n~-all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~---  187 (467)
                      ++   ..+-++++ +.+|+..|..+-|...+++               |.-.+...++++|+++|++.+...-++..   
T Consensus        87 ls---Evvdl~eKAs~lY~E~GspdtAAmaleK---------------Aak~lenv~Pd~AlqlYqralavve~~dr~~m  148 (308)
T KOG1585|consen   87 LS---EVVDLYEKASELYVECGSPDTAAMALEK---------------AAKALENVKPDDALQLYQRALAVVEEDDRDQM  148 (308)
T ss_pred             hH---HHHHHHHHHHHHHHHhCCcchHHHHHHH---------------HHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence            11   12223343 4567777877777665554               33445677888888888887765432211   


Q ss_pred             --HHHHHHHHHHHHcCChHHHHHHHhcccc----CCC--Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          188 --IILLARAQVAAAANHPFIAAESLAKIPD----IQH--MPA-TVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       188 --~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~--~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                        .+.-..+.+|.+..+|++|...+.+-..    ...  .+. .+...+.+|+-.+++..|...++.-.++
T Consensus       149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence              1224567788899999999888877642    121  221 1333455566667999999998876543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.20  E-value=0.23  Score=43.53  Aligned_cols=72  Identities=19%  Similarity=0.127  Sum_probs=45.5

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD  235 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~  235 (467)
                      +..++.++++.+|..+--..|+.... .+.-|.+++..|++.+|+.+|+.+.+-.+ .|..-..++.++..+|+
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~-~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPEL-DLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            45667777777777766677777654 36677777777888888777777665333 34333444444444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.19  E-value=0.068  Score=45.00  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHH
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI---ILLARAQVAAA  199 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~---~~l~Laql~~~  199 (467)
                      -.++.+...|+++.|++.|.+.+..-|....++-..|+.+--+|+.++|+.-|.++++...+....   .+...+-+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            357788889999999999999999999999999999999999999999999999999976543322   23566779999


Q ss_pred             cCChHHHHHHHhccccCC
Q 012265          200 ANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~  217 (467)
                      +|+-+.|..-|+.+.++.
T Consensus       128 ~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hCchHHHHHhHHHHHHhC
Confidence            999999999999887654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.18  E-value=0.02  Score=55.66  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=81.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      --++.-|+.+|+|++|+.++...+..+|.++......|..|++.+++..|+.-|..++..+-....+ +-..++.-...|
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA-YSRR~~AR~~Lg  179 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA-YSRRMQARESLG  179 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH-HHHHHHHHHHHh
Confidence            4568889999999999999999999999998888899999999999999999999888876444433 355677777889


Q ss_pred             ChHHHHHHHhccccCCC
Q 012265          202 HPFIAAESLAKIPDIQH  218 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~  218 (467)
                      +..+|-.-++.++.+.+
T Consensus       180 ~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEP  196 (536)
T ss_pred             hHHHHHHhHHHHHhhCc
Confidence            99999999999988765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.16  E-value=0.0083  Score=37.76  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA   63 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~   63 (467)
                      .+++.+|.+|..+|++++|...|+++++.+|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999999999998883

...

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.14  E-value=0.29  Score=43.35  Aligned_cols=124  Identities=13%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             HHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHH-----HHHHHHHHHcCC
Q 012265          162 LVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATV-----ATLVALKERAGD  235 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~-----~~l~~ly~~~g~  235 (467)
                      +.++++.++|+..|..+-+.. ...+..+++..+.+..+.|+...|+..|..+......|.+.     ..-+.++...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            456667777776666655432 22333445566667777777777777777776544444332     223455556677


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      |+.....++....      +.++-.......+|...++.|++..|...|..+....
T Consensus       148 y~dV~srvepLa~------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         148 YDDVSSRVEPLAG------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHHHhhhccC------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            7766665554321      1122222344456777788888888888888887643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.09  E-value=0.21  Score=43.78  Aligned_cols=84  Identities=19%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      .......+.+..+..+.+..++..+.-..|......++.+.+++..|+|.+|+.+|+.+.+..|..+. +.-+++..+..
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~-~kALlA~CL~~   90 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY-AKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH-HHHHHHHHHHH
Confidence            34566778888899999999999999999999999999999999999999999999999888888764 34556767766


Q ss_pred             cCChH
Q 012265          200 ANHPF  204 (467)
Q Consensus       200 ~g~~~  204 (467)
                      .|+.+
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            77654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.03  E-value=0.018  Score=36.06  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ++..+|.++...|++++|+..|+++++.+|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4566899999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.00  E-value=0.1  Score=45.14  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=37.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      ..+...|++++|+..++.++..+|-+... +..+..+|..+|++.+|+.+|+++.
T Consensus        70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~-~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   70 EALLEAGDYEEALRLLQRALALDPYDEEA-YRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHSTT-HHH-HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            34556778888888888888888877654 4677778888888888888877764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.98  E-value=0.011  Score=36.81  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA   63 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~   63 (467)
                      +++++|.++..+|++++|...|+.++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4688999999999999999999999999886

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.97  E-value=0.007  Score=58.78  Aligned_cols=123  Identities=22%  Similarity=0.126  Sum_probs=97.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      .+.=.+..|.++.|++.+...+.++|.+...+.-.+.++++.+++..|++-|..+++.+|+..... -..+.....+|++
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y-kfrg~A~rllg~~  198 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY-KFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc-chhhHHHHHhhch
Confidence            455567788899999999999999999988888888999999999999999999999999976543 4557777789999


Q ss_pred             HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          204 FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       204 ~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      .+|...|+.+..+++.+..-..|-.+.-..+..++-...++++.
T Consensus       199 e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  199 EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence            99999999999888877765555555555554544444444444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.83  E-value=0.43  Score=49.03  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=86.4

Q ss_pred             HHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHH
Q 012265           39 YVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE  118 (467)
Q Consensus        39 ~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~  118 (467)
                      +-.-+.-+...-+++-.++|+.+|+-...+.+++.     .......++.+.+.+..+....                  
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~------------------  232 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAE-----EEASTIVEAEELLRQAVKAGEA------------------  232 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc-----ccccCHHHHHHHHHHHHHHHHH------------------
Confidence            33456778888888888899998876665544321     1223455665555543221100                  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILLARAQVA  197 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~~~~l~Laql~  197 (467)
                        .+.........|..-++  ...+  ..+| ...+..-.|..+.+.|+.++|+++++++++.+|. +...++..|...+
T Consensus       233 --~lg~s~~~~~~g~~~e~--~~~R--dt~~-~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L  305 (539)
T PF04184_consen  233 --SLGKSQFLQHHGHFWEA--WHRR--DTNV-LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL  305 (539)
T ss_pred             --hhchhhhhhcccchhhh--hhcc--ccch-hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence              00000011111111111  0000  0011 0112234566667899999999999999988886 3444778999999


Q ss_pred             HHcCChHHHHHHHhccccC
Q 012265          198 AAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~  216 (467)
                      +..+.|.++..+|.+.-++
T Consensus       306 Lelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  306 LELQAYADVQALLAKYDDI  324 (539)
T ss_pred             HhcCCHHHHHHHHHHhccc
Confidence            9999999999999998654

The molecular function of this protein is uncertain.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.83  E-value=0.025  Score=35.56  Aligned_cols=31  Identities=10%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +|..+|.++...|++++|+..|+++++.+|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4566899999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.084  Score=51.28  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                      .+++.|++-..++.|+|-.|+.-+..++..+|.+.-+++-.|..++..+++++|...++..+..+
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            35778888888999999999999999999999999988888888888999999999998876654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=4.7  Score=45.08  Aligned_cols=192  Identities=18%  Similarity=0.090  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      .++...+...|+.|...+|++.+-++  .+|   ..++--..+..+.|+|++-++.|.-+-++--+.-  +--.|...|.
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika--dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyA 1177 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYA 1177 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc--CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHH
Confidence            46777888889999998888877654  344   3334344455678888888887775554322210  0112233444


Q ss_pred             HcCChHHHHHHHhc--------ccc----CC-C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhc-
Q 012265          199 AANHPFIAAESLAK--------IPD----IQ-H--------MPATVATLVALKERAGDIDGAAAVLDSAI--KWWLNAM-  254 (467)
Q Consensus       199 ~~g~~~~A~~~L~~--------~~~----~~-~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al--~~~~~~~-  254 (467)
                      +.|+..+-...+.-        +.+    .. +        +-.-+..|+..+...|++..|...-++|-  .-|+..- 
T Consensus      1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred             HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence            55555543333221        000    00 0        01114456677777888888888777663  3454411 


Q ss_pred             ----cCC-----------chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCHHHHHHHHHHhccCChhHHHHHHh
Q 012265          255 ----TED-----------NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYEK  317 (467)
Q Consensus       255 ----~~~-----------~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~~ala~Lv~a~~~~d~~kA~~l~~  317 (467)
                          ...           --...=+.++..+|...|-+++-+.+++..+... -..-....|..-|+.+.++|..+.++
T Consensus      1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred             HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                000           0001124557788889999999999999998776 23333445666777887777655443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.55  E-value=0.2  Score=51.00  Aligned_cols=146  Identities=16%  Similarity=0.076  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHH-HHhCCC---c---HH-HHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQF-AEKLPD---K---SK-IILL  191 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~-l~~~P~---~---~~-~~~l  191 (467)
                      ++......++++.++.-|.+.+..++....++..+.++++.+++..|++.+|.++|... +..+|.   .   .. ....
T Consensus       208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N  287 (696)
T KOG2471|consen  208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN  287 (696)
T ss_pred             hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence            34445566688888888988888888888889999999999999999999999887642 233333   1   11 1114


Q ss_pred             HHHHHHHHcCChHHHHHHHhcccc---------CC----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPD---------IQ----------HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~---------~~----------~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      .|+-|+.+.|.|.-++..|.+++.         +.          ..-.+.+..+-+|+..|+.-.|.++|.+++..|..
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            567788888888888888887762         11          12346678899999999999999999999988854


Q ss_pred             hccCCchHHHHHHHHHHHHH
Q 012265          253 AMTEDNKLSVIMQEAASFKL  272 (467)
Q Consensus       253 ~~~~~~~~~~ll~~la~~~l  272 (467)
                      ++       .+|+++|.+..
T Consensus       368 nP-------rlWLRlAEcCi  380 (696)
T KOG2471|consen  368 NP-------RLWLRLAECCI  380 (696)
T ss_pred             Cc-------HHHHHHHHHHH
Confidence            32       25666776653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.50  E-value=0.047  Score=48.61  Aligned_cols=68  Identities=13%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhccccCCCCchHHHHHHHHHHh----------cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          134 MDQARELVAALPDMFPDSVMPLLLQAAVLVR----------ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----------~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      |+.|++.++.....+|.+.+.+.--+..|..          ..-+++|+..|++++..+|+...++ ..+|..|..++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl-w~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL-WCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHh
Confidence            5778888888778899887765433333321          1334677888888899999988765 888888876543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.44  E-value=1  Score=48.95  Aligned_cols=178  Identities=20%  Similarity=0.190  Sum_probs=115.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccccC--CCCchH----HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          109 DLRLSPKQREAIYANRVLLLL-HANKMDQARELVAALPDMF--PDSVMP----LLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l-~~~~~~~A~~~~~~l~~~~--P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      ..+|++.+...+++..+.+++ ++.+++.|+..+++.....  ++..+.    .++.+.++.+.+... |...+.+.++.
T Consensus        50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~  128 (608)
T PF10345_consen   50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED  128 (608)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence            357888899999999999988 7999999999999875433  444332    345677777777777 99999998875


Q ss_pred             CCC---cHH--HHHHHHHHHHHHcCChHHHHHHHhccccCC---CChhHH--H--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          182 LPD---KSK--IILLARAQVAAAANHPFIAAESLAKIPDIQ---HMPATV--A--TLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       182 ~P~---~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---~~p~~~--~--~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .-+   ...  ..++..+.+++..+++..|+..|+.+....   .++.+.  .  .-+.+....+..++++..++.+...
T Consensus       129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~  208 (608)
T PF10345_consen  129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ  208 (608)
T ss_pred             HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence            433   211  233444556666689999999999997543   244432  1  2256666778888899999888654


Q ss_pred             HHHh--cc--CCchHHHHHHHHH--HHHHHCCChhHHHHHHHHHH
Q 012265          250 WLNA--MT--EDNKLSVIMQEAA--SFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       250 ~~~~--~~--~~~~~~~ll~~la--~~~l~~g~~~~A~~~le~ll  288 (467)
                      ....  .+  ..+.+.. |..+-  .+.+..|++..+...++++-
T Consensus       209 ~~~~q~~~~~~~~qL~~-~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  209 ARSLQLDPSVHIPQLKA-LFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HhhcccCCCCCcHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4321  00  1123322 22222  23467788777766555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.40  E-value=0.18  Score=39.94  Aligned_cols=68  Identities=21%  Similarity=0.053  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHH
Q 012265          171 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGA  239 (467)
Q Consensus       171 A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A  239 (467)
                      .+..+++.++.+|++... ++.+|..++..|++++|+..|-.++..+.   .-.....+..++...|.-+..
T Consensus         7 ~~~al~~~~a~~P~D~~a-r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDA-RYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHH-HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred             cHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence            356778889999999875 59999999999999999999999986543   234455666677666665433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.37  E-value=0.13  Score=46.27  Aligned_cols=102  Identities=13%  Similarity=0.017  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH-HH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-VI  263 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-~l  263 (467)
                      .+..+|..|.+.|++++|+..|.++.+...    .-.+...++.+....+++..+...+.++-.....  +++.... .+
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrl  115 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHH
Confidence            457889999999999999999999875332    3345667788888899999999999888765432  1121111 12


Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      -...|..++..++|.+|...|-.+...+.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            22246777889999999999988876653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.33  E-value=0.8  Score=46.03  Aligned_cols=129  Identities=24%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHH---cCCHHHHHHHHHh-ccccCCCCchHHHHHHHHH----Hh-----cCChhHHHHHHHHHHHhCCCc
Q 012265          119 AIYANRVLLLLH---ANKMDQARELVAA-LPDMFPDSVMPLLLQAAVL----VR-----ENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       119 ~l~~n~all~l~---~~~~~~A~~~~~~-l~~~~P~~~~~~ll~a~l~----~~-----~~~~~~A~~~l~~~l~~~P~~  185 (467)
                      .+.+..|+++-.   .|+.+.|...+.. +....+.+.+.+-+.|.+|    ..     ....++|+..|.+..+..|+.
T Consensus       180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            467788888888   8889999999998 6666666777666777766    22     223578999999999999875


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccc--------c---CCCChhH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIP--------D---IQHMPAT--VATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~--------~---~~~~p~~--~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      -..  ..+|-++...|+..+....++++.        .   ......+  +.+++.+..-.|++++|+..++++...
T Consensus       260 Y~G--IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  260 YSG--INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cch--HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            332  456667777787665555444443        1   1122333  467788888899999999999998864

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.29  E-value=0.035  Score=34.37  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=14.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                      +..|.++...|++++|+..+++++..+|+
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            33444444455555555555555555554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.035  Score=51.43  Aligned_cols=84  Identities=13%  Similarity=-0.040  Sum_probs=76.0

Q ss_pred             cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265          131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL  210 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L  210 (467)
                      ..+|+.|+..+.+.+..+|....++--.|..+++.++++.+..-+.+++...|+.... ++.|++..+....|++|+.+|
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~-h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA-HYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH-HHHHHHHHHhhccccHHHHHH
Confidence            4568999999999999999998888888999999999999999999999999998765 599999999999999999999


Q ss_pred             hcccc
Q 012265          211 AKIPD  215 (467)
Q Consensus       211 ~~~~~  215 (467)
                      .++.+
T Consensus       102 qra~s  106 (284)
T KOG4642|consen  102 QRAYS  106 (284)
T ss_pred             HHHHH
Confidence            99964

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.12  E-value=0.82  Score=39.56  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=33.5

Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~  217 (467)
                      ...+.++++.+|..+--..|+.... .+.-+.+++..|++.+|+.+|+.+.+-.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~-d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKEL-DMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCcccc-chhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            4566666666666655566666543 3556667777777777777777766543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.94  E-value=0.9  Score=46.78  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE  286 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~  286 (467)
                      +-..|+.+..+.|+.++|++.++..+..+   + . .+...+...+...++..+.|.++..++.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~---p-~-~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEF---P-N-LDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhC---C-c-cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34457777788888888888888877542   1 1 11223455677788888888888877766

The molecular function of this protein is uncertain.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.91  E-value=2.1  Score=38.10  Aligned_cols=127  Identities=15%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHH-HHHHHHhcCChhHHHHHHHHHHHhCC--CcH-HHHHHHHHHH
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLL-QAAVLVRENKAGKAEELLGQFAEKLP--DKS-KIILLARAQV  196 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll-~a~l~~~~~~~~~A~~~l~~~l~~~P--~~~-~~~~l~Laql  196 (467)
                      |..++-+...|+.++|...|..+.+..-++.. ...+ .+.++...|+...|+..+.++....|  .-. ..+++.-+.+
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l  141 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL  141 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence            44566667789999999999999887666544 3334 45667889999999999998877554  222 2456777888


Q ss_pred             HHHcCChHHHHHHHhccccC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          197 AAAANHPFIAAESLAKIPDI-QH-MPATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~-~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      ++..|-|++-...++.+..- .+ .....-.|+..-.+.|++.+|..+|.....
T Consensus       142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            89999999988888877532 11 122344567777789999999999998765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.88  E-value=0.04  Score=35.40  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKR   60 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~   60 (467)
                      +..||.+|..+|++++|+.+|+++|..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567999999999999999999996543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.82  E-value=3.1  Score=44.50  Aligned_cols=142  Identities=18%  Similarity=0.093  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      .|.|.|-.--|+++||+.+|-.+...+   ..+-+-     .   +..+.+..+..+..--              .--..
T Consensus       738 ~q~aei~~~~g~feeaek~yld~drrD---LAielr-----~---klgDwfrV~qL~r~g~--------------~d~dD  792 (1189)
T KOG2041|consen  738 QQRAEISAFYGEFEEAEKLYLDADRRD---LAIELR-----K---KLGDWFRVYQLIRNGG--------------SDDDD  792 (1189)
T ss_pred             HHhHhHhhhhcchhHhhhhhhccchhh---hhHHHH-----H---hhhhHHHHHHHHHccC--------------CCcch
Confidence            677888888899999999997665543   222110     1   1233444444432110              00112


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      .+...+..|.+-.+.....+++|.+.+..--..        --.+..|++..++++    |+.+...-|++...+ =.+|
T Consensus       793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~ll-p~~a  859 (1189)
T KOG2041|consen  793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELL-PVMA  859 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchH-HHHH
Confidence            234445556666666666677777666643211        012223344444443    333444556665544 5667


Q ss_pred             HHHHHcCChHHHHHHHhccc
Q 012265          195 QVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~  214 (467)
                      +++..-|--++|++.|-+..
T Consensus       860 ~mf~svGMC~qAV~a~Lr~s  879 (1189)
T KOG2041|consen  860 DMFTSVGMCDQAVEAYLRRS  879 (1189)
T ss_pred             HHHHhhchHHHHHHHHHhcc
Confidence            77777777777777665543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.73  E-value=0.71  Score=46.57  Aligned_cols=188  Identities=15%  Similarity=0.041  Sum_probs=109.1

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhh------hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH---Hhhh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIE------LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA---VNNL   75 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~E------l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va---~nnl   75 (467)
                      +..++..+..+....  .++.+..=      -.+..+|++.|+..+|+.+.|.++++++|-...  ..+.-.-   ..|.
T Consensus        10 Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--~~~~~~F~~~~~~~   85 (360)
T PF04910_consen   10 YQEAQEQFYAAVQSH--DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--RAFHPSFSPFRSNL   85 (360)
T ss_pred             HHHHHHHHHHHHHcc--CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHHHHHhhhhhccc
Confidence            455666666666543  23333211      236679999999999999999999999886432  1111000   0011


Q ss_pred             hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchH
Q 012265           76 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMP  154 (467)
Q Consensus        76 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~  154 (467)
                         .. ++.---++..+       |              .+.=.+.+.....+.+.|-+.-|.+.++-+...+|. ++.+
T Consensus        86 ---~~-g~~rL~~~~~e-------N--------------R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen   86 ---TS-GNCRLDYRRPE-------N--------------RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             ---cc-CccccCCcccc-------c--------------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence               00 00000000000       0              111234566777788889999999999999999999 6666


Q ss_pred             HHHHHHHH-HhcCChhHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCCh---------------HHHHHHH
Q 012265          155 LLLQAAVL-VRENKAGKAEELLGQFAEK--------LPDKSKIILLARAQVAAAANHP---------------FIAAESL  210 (467)
Q Consensus       155 ~ll~a~l~-~~~~~~~~A~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~---------------~~A~~~L  210 (467)
                      .++....| ++.++++=-+.+++.....        -|+-    .+..|-.+...++-               +.|...|
T Consensus       141 ~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~----a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L  216 (360)
T PF04910_consen  141 VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF----AFSIALAYFRLEKEESSQSSAQSGRSENSESADEAL  216 (360)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH----HHHHHHHHHHhcCccccccccccccccchhHHHHHH
Confidence            66655544 6788888777777765542        2332    24444444445555               6777777


Q ss_pred             hccccCCCChhHHHHHH
Q 012265          211 AKIPDIQHMPATVATLV  227 (467)
Q Consensus       211 ~~~~~~~~~p~~~~~l~  227 (467)
                      .+++..  .|.++..|.
T Consensus       217 ~~Ai~~--fP~vl~~Ll  231 (360)
T PF04910_consen  217 QKAILR--FPWVLVPLL  231 (360)
T ss_pred             HHHHHH--hHHHHHHHH
Confidence            776532  455544433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.56  E-value=0.7  Score=43.85  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             HHHHHHHcCChHHHHHHHhccccCC---CChhHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHHHH
Q 012265          193 RAQVAAAANHPFIAAESLAKIPDIQ---HMPATVATL----VALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSVIM  264 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~~~---~~p~~~~~l----~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~ll  264 (467)
                      -.|+|..+.+...--.+|++.+.+.   ++|-+...+    +..+++.|++++|-.-|=+|...|....... ..... +
T Consensus       197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK-Y  275 (440)
T KOG1464|consen  197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK-Y  275 (440)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH-H
Confidence            3677878877777777777776543   355444332    4566777888888777767766654322110 11111 2


Q ss_pred             HHHHHHHHHCC----ChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHH
Q 012265          265 QEAASFKLRHG----REEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESY  315 (467)
Q Consensus       265 ~~la~~~l~~g----~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l  315 (467)
                      +-+|..++..|    +-++|.-     .+.+|..-++.+||.+|...|.-.-+..
T Consensus       276 LVLANMLmkS~iNPFDsQEAKP-----yKNdPEIlAMTnlv~aYQ~NdI~eFE~I  325 (440)
T KOG1464|consen  276 LVLANMLMKSGINPFDSQEAKP-----YKNDPEILAMTNLVAAYQNNDIIEFERI  325 (440)
T ss_pred             HHHHHHHHHcCCCCCcccccCC-----CCCCHHHHHHHHHHHHHhcccHHHHHHH
Confidence            22567777665    2223321     1112334455667777766665444433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.53  E-value=0.093  Score=32.78  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          263 IMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ++..+|.++...|++++|...|+++++.+|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3555899999999999999999999998874

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.49  E-value=0.024  Score=36.02  Aligned_cols=32  Identities=9%  Similarity=0.051  Sum_probs=28.6

Q ss_pred             HHhccccCCCCchHHHHHHHHHHhcCChhHHH
Q 012265          141 VAALPDMFPDSVMPLLLQAAVLVRENKAGKAE  172 (467)
Q Consensus       141 ~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~  172 (467)
                      ++++++.+|++..++...|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56778889999999999999999999999986

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.48  E-value=0.12  Score=46.15  Aligned_cols=98  Identities=13%  Similarity=-0.012  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      ++.|.+.++.....+|.+.+.+ +.-|-.++...++..             -++..          .-+++|+.-|++|+
T Consensus         7 FE~ark~aea~y~~nP~DadnL-~~WG~ALLELAqfk~-------------g~es~----------~miedAisK~eeAL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNL-TNWGGALLELAQFKQ-------------GPESK----------KMIEDAISKFEEAL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHHHS--------------HHHHH----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHH-HHHHHHHHHHHhccC-------------cchHH----------HHHHHHHHHHHHHH
Confidence            5677788888888888887654 333443333222111             00100          11345555666666


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHCCC-----------hhHHHHHHHHHHHhcCCHHH
Q 012265          248 KWWLNAMTEDNKLSVIMQEAASFKLRHGR-----------EEDASHLFEELVKTHGSIEA  296 (467)
Q Consensus       248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~-----------~~~A~~~le~ll~~~pd~~a  296 (467)
                      ...       |.....+..+|..|..++.           +++|...|++++..+|+.+.
T Consensus        63 ~I~-------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   63 KIN-------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HH--------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcC-------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            542       2222334446777765543           56888899999999987544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.44  E-value=3.1  Score=42.72  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc---ccCCCCc-------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHH-
Q 012265          120 IYANRVLLLLHANKMDQARELVAALP---DMFPDSV-------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSK-  187 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~---~~~P~~~-------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~-  187 (467)
                      +.-+...+.+-.|++..|++.+..+.   ..+|.-.       ....+.+.-...-+.+++|+..+..+.+.-.. +.. 
T Consensus       325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a  404 (629)
T KOG2300|consen  325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA  404 (629)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence            44566777888999999988777655   4566521       12234444345678889999988888776432 221 


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc-
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN-  258 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~-  258 (467)
                      .+.+.+|-+|+++|+-+.--++++.+.....        ..++....+.+...+|++.+|...+.+.+.-- +  .+|. 
T Consensus       405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-n--aed~~  481 (629)
T KOG2300|consen  405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-N--AEDLN  481 (629)
T ss_pred             HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-c--hhhHH
Confidence            2346789999999999988888888864321        12344455666667899999999999887642 1  1111 


Q ss_pred             hH-HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          259 KL-SVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       259 ~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+ .--+.-++.+.+..|+..++.+...-++...
T Consensus       482 rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  482 RLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            11 1112235777788899999999888887765

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.38  E-value=0.99  Score=45.52  Aligned_cols=132  Identities=15%  Similarity=0.015  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc--------cc------------------CCCCchH---HHHHHHHHHhcCChhHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALP--------DM------------------FPDSVMP---LLLQAAVLVRENKAGKA  171 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~--------~~------------------~P~~~~~---~ll~a~l~~~~~~~~~A  171 (467)
                      ++..+.++.++|+.+.|.+++++++        ..                  .+.|...   .+-....+.+.|-+.-|
T Consensus        43 Llqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTA  122 (360)
T PF04910_consen   43 LLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTA  122 (360)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHH
Confidence            3455666677777776666666543        11                  2333332   22334556789999999


Q ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCH--------
Q 012265          172 EELLGQFAEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERAGDI--------  236 (467)
Q Consensus       172 ~~~l~~~l~~~P~-~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~--------  236 (467)
                      .+.++-++..+|+ |+-.+++.+=.+.++.++|+--+..++....      ....|++...++..+...++.        
T Consensus       123 lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~  202 (360)
T PF04910_consen  123 LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQ  202 (360)
T ss_pred             HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccc
Confidence            9999999999999 7776767777777899999988888887654      223577777777777777777        


Q ss_pred             -------HHHHHHHHHHHHHHHH
Q 012265          237 -------DGAAAVLDSAIKWWLN  252 (467)
Q Consensus       237 -------~~A~~~l~~al~~~~~  252 (467)
                             +.|...|.+|+..++.
T Consensus       203 ~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  203 SGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             cccccchhHHHHHHHHHHHHhHH
Confidence                   8999999999987753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK10941 hypothetical protein; Provisional

Probab=94.27  E-value=0.32  Score=46.84  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      .|.-.+++..++++.|.++++.++...|+++.-+.=.|.+|.+.|.+..|..-|+.+++..|+++..
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            4445556666666666666666666666666555556666666666666666666666666666543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.23  E-value=0.099  Score=33.52  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      +..+|.++...|++++|+.+|++++...
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4458999999999999999999977543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.22  E-value=0.53  Score=40.71  Aligned_cols=81  Identities=12%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ......+.+..+.++.+..++..+.-..|+.....++.+-+++..|+|.+|+.+|+.+.+..+..+- .+-+++..+...
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~-~kAL~A~CL~al   91 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY-GKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH-HHHHHHHHHHhc
Confidence            3455666777999999999999999999999999999999999999999999999999887766542 334455555555


Q ss_pred             CC
Q 012265          201 NH  202 (467)
Q Consensus       201 g~  202 (467)
                      |+
T Consensus        92 ~D   93 (153)
T TIGR02561        92 GD   93 (153)
T ss_pred             CC
Confidence            54

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.15  E-value=0.41  Score=44.50  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc------CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          221 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT------EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       221 ~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~------~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+...++.+|..+|+.+.....+++|+.+|.....      ..-.-..++..+|.+..+.|++++|...|.+++...
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            45667899999999988888888888888765321      111112345557999999999999999999999765

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.73  Score=45.04  Aligned_cols=159  Identities=12%  Similarity=0.043  Sum_probs=95.2

Q ss_pred             HHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           38 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        38 A~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      +.++.-.|++-+|....+++|...|.|.-..-.. ......++.. ....+++++   .+.      ..    .-+.  -
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfs-h~a~fy~G~~~~~k~ai~kI---ip~------wn----~dlp--~  173 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFS-HDAHFYNGNQIGKKNAIEKI---IPK------WN----ADLP--C  173 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhh-hhHHHhccchhhhhhHHHHh---ccc------cC----CCCc--H
Confidence            4566778899999999999999888775433211 1111111111 111222222   111      00    0010  1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILL  191 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l  191 (467)
                      ..-+.-..+.-+...|-+++|.+..++.+..+|.+-.+....+.++...++.+++.+...+--..--..     ...  -
T Consensus       174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy--W  251 (491)
T KOG2610|consen  174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY--W  251 (491)
T ss_pred             HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh--H
Confidence            112233345566778889999999999999999888888888888888999999887766432111000     011  2


Q ss_pred             HHHHHHHHcCChHHHHHHHhccc
Q 012265          192 ARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      .-|-.|++-+.|+.|+.+|..-+
T Consensus       252 H~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHHH
Confidence            33556777889999999887653

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.92  E-value=5.4  Score=41.64  Aligned_cols=131  Identities=10%  Similarity=0.102  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV-LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l-~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ++.+........--+..|+.+|.++.+.--....+.+..|.+ |.-.++..-|.++++--+..+++++..+ +.....++
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv-~~YldfL~  446 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYV-LKYLDFLS  446 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHH-HHHHHHHH
Confidence            344444444555568889999998875432222333333322 4578999999999999999999998765 77888888


Q ss_pred             HcCChHHHHHHHhccccC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          199 AANHPFIAAESLAKIPDI--QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~--~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ..|+-..|..+|++++..  ..  .-.+|......-..-|+...++++-++-...++
T Consensus       447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            999999999999999864  11  224565555666667888877777666554443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.82  E-value=7.6  Score=38.45  Aligned_cols=29  Identities=14%  Similarity=-0.024  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR   60 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~   60 (467)
                      ...+-.|......|+++++..+.+++...
T Consensus        30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~   58 (352)
T PF02259_consen   30 EYSFYRALLALRQGDYDEAKKYIEKARQL   58 (352)
T ss_pred             hHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            34466777778999999999998887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.77  E-value=5.8  Score=38.69  Aligned_cols=102  Identities=19%  Similarity=0.082  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhcccc-C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPD-I-------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN  258 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~-------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~  258 (467)
                      ..+++.||.+|...++|..|.++|..+.. .       .....+...++.+|+..++..+|..+..++.-....  ..++
T Consensus       103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--~~Ne  180 (399)
T KOG1497|consen  103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--SSNE  180 (399)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc--ccCH
Confidence            35679999999999999999999998852 1       113344567899999999999999999887533211  1223


Q ss_pred             hHHHHHHH--HHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          259 KLSVIMQE--AASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       259 ~~~~ll~~--la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+. +...  .|.++-..+++=+|...|-++....
T Consensus       181 ~Lq-ie~kvc~ARvlD~krkFlEAAqrYyels~~k  214 (399)
T KOG1497|consen  181 QLQ-IEYKVCYARVLDYKRKFLEAAQRYYELSQRK  214 (399)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321 1111  2566667788888888887777654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.65  E-value=0.23  Score=39.31  Aligned_cols=67  Identities=12%  Similarity=-0.024  Sum_probs=47.3

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHcCChHH
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAANHPFI  205 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~g~~~~  205 (467)
                      ..++..+..+|++..+.+-.|..++..|++++|+..|..++..+++. ....+-.|..++-..|.-+.
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p   76 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP   76 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence            44666677899999999999999999999999999999999988764 12334556666655555443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.57  E-value=1.4  Score=36.57  Aligned_cols=99  Identities=19%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCC--------C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQ--------H-----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT--  255 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~--------~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~--  255 (467)
                      |.-++-.+..|-|++|...+.++.++.        +     +.-.+..|...+...|++++++..-+.++.++..+..  
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            444666677788888888888876421        1     1123567888899999999999999999988855432  


Q ss_pred             CCch--HHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          256 EDNK--LSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       256 ~~~~--~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      .+..  .....+.-|..+...|+.++|+..|+.+.+
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            1211  122233346667889999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.53  E-value=1.4  Score=43.61  Aligned_cols=151  Identities=17%  Similarity=-0.004  Sum_probs=98.8

Q ss_pred             HHhcCChhHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEK---LP-DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVALK  230 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~---~P-~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly  230 (467)
                      +.+.-++.+++.+..-.+..   .| .....+.+.++..++..+.++++++.|+++..+.+   +    ..+...|+.+|
T Consensus        93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf  172 (518)
T KOG1941|consen   93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF  172 (518)
T ss_pred             HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence            33444455566555444432   22 23334568899999999999999999999975422   1    23456789999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhccCCch---HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCHHHHH--HHHH
Q 012265          231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNK---LSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSIEALV--GLVT  302 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~---~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~~ala--~Lv~  302 (467)
                      .+..|+++|.-+..+|.+.-....-++-.   ....+..++-.+-..|+.-.|.+..+++.++.   .|....+  -++.
T Consensus       173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~  252 (518)
T KOG1941|consen  173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF  252 (518)
T ss_pred             HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            99999999999999998765443322211   12234456777778899999999999988764   5532222  2222


Q ss_pred             H--h-ccCChhHH
Q 012265          303 T--S-AHVDVDKA  312 (467)
Q Consensus       303 a--~-~~~d~~kA  312 (467)
                      +  | +..|++.|
T Consensus       253 aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  253 ADIYRSRGDLERA  265 (518)
T ss_pred             HHHHHhcccHhHH
Confidence            2  3 45666665

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.39  E-value=0.11  Score=52.99  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .-+.+--.+..+.|+.|..++.+++.++|+.....-..+..+++.+.+..|+.-+.++++..|..... ++..|..++..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~-Y~rrg~a~m~l   85 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA-YVRRGTAVMAL   85 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe-eeeccHHHHhH
Confidence            34677788888999999999999999999988887788888899999999999999999999988764 47788999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHH
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      +++.+|...|++...+.+ .+.+.
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHH
Confidence            999999999999887765 55443

>smart00028 TPR Tetratricopeptide repeats

Probab=93.33  E-value=0.17  Score=29.95  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA   63 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~   63 (467)
                      ++..+|.++..+|++++|...|+.+++..|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4678999999999999999999999988775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.19  E-value=10  Score=42.00  Aligned_cols=196  Identities=16%  Similarity=0.084  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCc--HHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEK---LPDK--SKIIL  190 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~---~P~~--~~~~~  190 (467)
                      .--.+.+.++.|+++.|.+..+.++..-|.+..     +....+.+..-.|++++|..+.+.+.+.   +-..  .....
T Consensus       461 ~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~  540 (894)
T COG2909         461 QALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL  540 (894)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            344688999999999999999988777665433     2335566677899999999888876654   2111  11123


Q ss_pred             HHHHHHHHHcCChH--HHHHHHhcccc----CCCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265          191 LARAQVAAAANHPF--IAAESLAKIPD----IQHMPAT-VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI  263 (467)
Q Consensus       191 l~Laql~~~~g~~~--~A~~~L~~~~~----~~~~p~~-~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l  263 (467)
                      +.-+.++..+|+..  +....+..+-.    ..+..++ +...+.++...-+++.+.......+.+-....+........
T Consensus       541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~  620 (894)
T COG2909         541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLA  620 (894)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHH
Confidence            55678889999433  33333333321    1112111 22223333333337777666666554422111111111112


Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHHhc--C--CHHH-----HHHHHHHhccCChhHHHHHH
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVKTH--G--SIEA-----LVGLVTTSAHVDVDKAESYE  316 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~~~--p--d~~a-----la~Lv~a~~~~d~~kA~~l~  316 (467)
                      +..++.+....|++++|...+.++....  +  +.+.     .+.+++-..+.|.+.+....
T Consensus       621 ~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l  682 (894)
T COG2909         621 LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL  682 (894)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence            2246888899999999999988887654  2  2222     33445555788876665443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.19  E-value=0.34  Score=45.13  Aligned_cols=92  Identities=13%  Similarity=-0.032  Sum_probs=75.6

Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-hHHHHHHHHHHHcCCHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-ATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +...++|..|+..|.+++..+|....+. ...|..|++.++++.+..--.+++++.++. -..+-++...++...+++|+
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~-tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYY-TNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhh-hhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            4456788999999999999999986654 677889999999999999988888876532 23556788888999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 012265          241 AVLDSAIKWWLNAM  254 (467)
Q Consensus       241 ~~l~~al~~~~~~~  254 (467)
                      .+|.+|.+.++..+
T Consensus        99 ~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   99 KVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999988776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.08  E-value=3.2  Score=43.07  Aligned_cols=131  Identities=17%  Similarity=0.113  Sum_probs=71.6

Q ss_pred             HHHHHHcCCHHHHHHHHH--hccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          125 VLLLLHANKMDQARELVA--ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~--~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      ..+.+..++++.+.+.++  +++..-|.+.  ..-.+.-+.+.|-++.|+.+..        |+.    ....+.++.|+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~--~~~i~~fL~~~G~~e~AL~~~~--------D~~----~rFeLAl~lg~  333 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQ--GQSIARFLEKKGYPELALQFVT--------DPD----HRFELALQLGN  333 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG--HHH--HHHHHHHHHHTT-HHHHHHHSS---------HH----HHHHHHHHCT-
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCChhH--HHHHHHHHHHCCCHHHHHhhcC--------ChH----HHhHHHHhcCC
Confidence            445556677888666554  3333333111  1222334456777777776542        222    23456678888


Q ss_pred             hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265          203 PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH  282 (467)
Q Consensus       203 ~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~  282 (467)
                      ++.|.++...+-    ++..|..|+.+.+.+|+++-|..+|.++-.+               ..+..+|...|+.+.-..
T Consensus       334 L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------~~L~lLy~~~g~~~~L~k  394 (443)
T PF04053_consen  334 LDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------SGLLLLYSSTGDREKLSK  394 (443)
T ss_dssp             HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H---------------HHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc---------------cccHHHHHHhCCHHHHHH
Confidence            888888776654    5677888888888888888888888765332               113445667777655555


Q ss_pred             HHHHHH
Q 012265          283 LFEELV  288 (467)
Q Consensus       283 ~le~ll  288 (467)
                      +.+.+.
T Consensus       395 l~~~a~  400 (443)
T PF04053_consen  395 LAKIAE  400 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.07  E-value=12  Score=38.72  Aligned_cols=135  Identities=15%  Similarity=0.024  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-CCCchH--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----H
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMF-PDSVMP--LLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----S  186 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~--~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~  186 (467)
                      .....+++-.++-....|.++.|...|..+.+.- -.+..+  .+..|-.|++.++.+.-.++++.+   .|.+     .
T Consensus       364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ss  440 (629)
T KOG2300|consen  364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSS  440 (629)
T ss_pred             HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchH
Confidence            3344566666766677788999988877665433 333333  345667788877766544444432   3331     1


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          187 ----KIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-------ATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       187 ----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                          ..+.+..|-....+|++.||...+.+.++.....       ..+..|+.+....|+..++...+.-++.+-+.
T Consensus       441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK  517 (629)
T KOG2300|consen  441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK  517 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence                1234667777789999999999999988643211       12346778888899999999999999987655

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.02  E-value=11  Score=40.69  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      .|-+.|+|.+|-++-.++.  .|+....++++.|+=+-.+|+|.+|.++|-.+.+    |..   ....|.+.|.++..+
T Consensus       800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~---aiqmydk~~~~ddmi  870 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK---AIQMYDKHGLDDDMI  870 (1636)
T ss_pred             HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH---HHHHHHhhCcchHHH
Confidence            3556777777776665553  3665555556677777888888888887766642    321   123455566666555


Q ss_pred             HHHH
Q 012265          241 AVLD  244 (467)
Q Consensus       241 ~~l~  244 (467)
                      .+.+
T Consensus       871 rlv~  874 (1636)
T KOG3616|consen  871 RLVE  874 (1636)
T ss_pred             HHHH
Confidence            5544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.00  E-value=4.6  Score=36.89  Aligned_cols=143  Identities=15%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      +...+...-+|.+|++....+....-.......+.|.+..     .+.+..|.+-.+.. .++..+     -.+..+..-
T Consensus        54 ky~~l~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s-----~~~l~~L~~~tk~S-~dP~ll-----Yy~Wsr~~d  122 (203)
T PF11207_consen   54 KYQLLEALEKYSKCIELAAQIQHIKQKERKTDRFRALLHS-----YQELERLQEETKNS-QDPYLL-----YYHWSRFGD  122 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHH-----HHHHHHHHHHHccC-CCccHH-----HHHhhccCc
Confidence            3444444456777777666654322222222233333221     12333444433332 233221     133455556


Q ss_pred             HHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265          204 FIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       204 ~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                      ++|...|-.+....  ..|.+...|+..|. .-+.++++.+|..+++.+..   ++.-...++..++.++...|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~---~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP---DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            77877777765432  26788888899887 46789999999999987633   21222346777899999999998874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=92.76  E-value=0.15  Score=51.90  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      +.-|++++++..+.+..|..-+..+++.+|....+++..|......+.+.+|...|+......|++..+
T Consensus        40 ~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   40 YFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             eechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence            455677777788888888888888888888877777788777778888888888888888888887653

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.54  E-value=8.5  Score=40.22  Aligned_cols=144  Identities=14%  Similarity=0.115  Sum_probs=89.8

Q ss_pred             hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-h-HHHHHHHHHHHcCCHHHHHHHHHH
Q 012265          168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-A-TVATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-~-~~~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                      ++.--.++.+++...-.+...++..+-..-.+..-...|..+|.++-+....+ . ++..-..=|..+++.+-|..+|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            44455666666665443333332333334445566888888888887643322 2 222222334467899999999998


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh--cCC--HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          246 AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT--HGS--IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       246 al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~--~pd--~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      -+.++.    +++.+   ......++...++...|..+|++++..  .++  ...+..++.-- .-.|+..+.++.++
T Consensus       427 GLkkf~----d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR  497 (656)
T KOG1914|consen  427 GLKKFG----DSPEY---VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR  497 (656)
T ss_pred             HHHhcC----CChHH---HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            888763    33443   334578889999999999999999987  344  34455544332 45667777777654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.26  E-value=2.2  Score=33.84  Aligned_cols=62  Identities=21%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          230 KERAGDIDGAAAVLDSAIKWWLNAMTED--NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       230 y~~~g~~~~A~~~l~~al~~~~~~~~~~--~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..+.|++.+|.+.|.+...+........  ..+...+..+|.++...|++++|...+++++..-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3456777777777777666543322111  1234456668999999999999999999999875

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.11  E-value=0.4  Score=33.83  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ  158 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~  158 (467)
                      .|..++.++..|+++.|++.++.+++..|++..+..+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            34555556666666666666666666666665554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.02  E-value=3.1  Score=45.17  Aligned_cols=119  Identities=14%  Similarity=0.048  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhC---CCcHHHHHHHHHHHHH-HcCChHHHHHHHhccccCCCCh-------hHHHHHHHHHHHcCCHHH
Q 012265          170 KAEELLGQFAEKL---PDKSKIILLARAQVAA-AANHPFIAAESLAKIPDIQHMP-------ATVATLVALKERAGDIDG  238 (467)
Q Consensus       170 ~A~~~l~~~l~~~---P~~~~~~~l~Laql~~-~~g~~~~A~~~L~~~~~~~~~p-------~~~~~l~~ly~~~g~~~~  238 (467)
                      -|+++|+-++...   |.....+++.+|.+|+ .+.+++.|...|++.+.+...+       ..-..++.+|.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            4556666665322   2222235677888877 6788888888888876432111       22345677887777666 


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHH-HHHHHHCCChhHHHHHHHHHHHhc
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEA-ASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~l-a~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      |...++++++.+....  .......++-+ +.+++..+++..|.+.++.+....
T Consensus       118 a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            8888888887764411  12222223222 333444578888888888888765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.86  E-value=1.6  Score=40.98  Aligned_cols=98  Identities=16%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcc--------ccCCCCchH----------HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          120 IYANRVLLLLHANKMDQARELVAALP--------DMFPDSVMP----------LLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~--------~~~P~~~~~----------~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      +....+.-++..|++.+|...+..++        +..|+.+.-          ++..++.++.-|+|-++++.+..++..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            44566777788888888887776543        445665542          333455667789999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      +|++..++ +..|..+...=+.++|..-|..++++++
T Consensus       260 ~~~nvKA~-frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  260 HPGNVKAY-FRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             CCchHHHH-HHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            99998865 8899999999999999999999998755

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.72  E-value=13  Score=39.40  Aligned_cols=162  Identities=14%  Similarity=0.046  Sum_probs=103.9

Q ss_pred             HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHH
Q 012265          127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA  206 (467)
Q Consensus       127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A  206 (467)
                      .....|.++...-.++..+-.-......++-.+..+...|+.+-|...+....+.+-.....+++.-|.+--.+|++..|
T Consensus       306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A  385 (577)
T KOG1258|consen  306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDA  385 (577)
T ss_pred             hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHH
Confidence            34445666666666666543323333445545555566688888888888877766444445678888888899999999


Q ss_pred             HHHHhccccCCCChhHH---HHHHHHHHHcCCHHHHHH---HHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HCCChhH
Q 012265          207 AESLAKIPDIQHMPATV---ATLVALKERAGDIDGAAA---VLDSAIKWWLNAMTEDNKLSVIMQEAASFKL-RHGREED  279 (467)
Q Consensus       207 ~~~L~~~~~~~~~p~~~---~~l~~ly~~~g~~~~A~~---~l~~al~~~~~~~~~~~~~~~ll~~la~~~l-~~g~~~~  279 (467)
                      ..+|+++.+--  |+++   ..-+.+..+.|..+.+..   ++......+.    ...-+..+....+.+.. -.++.+.
T Consensus       386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~----~~~i~~~l~~~~~r~~~~i~~d~~~  459 (577)
T KOG1258|consen  386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE----NNGILEKLYVKFARLRYKIREDADL  459 (577)
T ss_pred             HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc----CcchhHHHHHHHHHHHHHHhcCHHH
Confidence            99999997532  5543   334566667888888774   3322222211    11223334444555553 4789999


Q ss_pred             HHHHHHHHHHhcCCH
Q 012265          280 ASHLFEELVKTHGSI  294 (467)
Q Consensus       280 A~~~le~ll~~~pd~  294 (467)
                      |..++.+++...|+.
T Consensus       460 a~~~l~~~~~~~~~~  474 (577)
T KOG1258|consen  460 ARIILLEANDILPDC  474 (577)
T ss_pred             HHHHHHHhhhcCCcc
Confidence            999999999998874

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.10  E-value=3.9  Score=39.24  Aligned_cols=105  Identities=16%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCHH
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERAGDID  237 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~~  237 (467)
                      ++++|++|+++|...               |.++++.|++..|.++-.-+++      ...+......++.++...+..+
T Consensus         2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~   66 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE   66 (260)
T ss_dssp             HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred             ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence            567888888776542               2233344444444443332221      1124445567777777766444


Q ss_pred             -HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHH
Q 012265          238 -GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF  284 (467)
Q Consensus       238 -~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~l  284 (467)
                       +-..++++++.|- ...........++..+|..+.+.|++.+|..+|
T Consensus        67 p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   67 PERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             chHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence             4556777788765 322222233456777899999999999888655

; PDB: 3LKU_E 2WPV_G.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.82  E-value=5.3  Score=35.91  Aligned_cols=115  Identities=15%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             hhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhcc-CCCChhHHHHhhhhhhhhhhhH
Q 012265           23 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK-GPKDVNDSLKKLDRIKEKDMQN  101 (467)
Q Consensus        23 ~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~-~~~~~~~a~~~l~~~~~~~~~~  101 (467)
                      +..++.|+.-.+..+|..|...|++++|.+.|.++.....+.....- +.-+++.+. -..+...+...+.++...    
T Consensus        28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-~~l~~irv~i~~~d~~~v~~~i~ka~~~----  102 (177)
T PF10602_consen   28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-MCLNVIRVAIFFGDWSHVEKYIEKAESL----  102 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH----
Confidence            44566677788999999999999999999999998775432221111 111221110 012333333332221110    


Q ss_pred             HHHHHHhhcCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC
Q 012265          102 FQLARVLDLRLS-PKQREAIYANRVLLLLHANKMDQARELVAALPDMFP  149 (467)
Q Consensus       102 ~~~~~~l~~kL~-~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P  149 (467)
                            + .+.. ..-..-+..-.++.++..++|..|.+.|-.....+.
T Consensus       103 ------~-~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  103 ------I-EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             ------H-hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence                  0 0000 011122444567777788888888877777766554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.69  E-value=0.45  Score=30.91  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKR   60 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~   60 (467)
                      +.+...+|.+|..+|++++|+.++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345678999999999999999999999875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.46  E-value=0.52  Score=49.18  Aligned_cols=96  Identities=19%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             HHHHHHHHH-hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265          155 LLLQAAVLV-RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER  232 (467)
Q Consensus       155 ~ll~a~l~~-~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~  232 (467)
                      .+..|.+|. ..|+.-.|+++|+.++..-|.....-...||++.+..|-..+|-..|.+.+.+.+ .|-+...++..|+.
T Consensus       609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~  688 (886)
T KOG4507|consen  609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA  688 (886)
T ss_pred             EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence            345666664 5789999999999999888865443337889999999988899999988887664 67778888999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q 012265          233 AGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       233 ~g~~~~A~~~l~~al~~~  250 (467)
                      ..+.+.|++.|+.|+...
T Consensus       689 l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  689 LKNISGALEAFRQALKLT  706 (886)
T ss_pred             HhhhHHHHHHHHHHHhcC
Confidence            999999999999998764

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=6  Score=38.08  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHcCChHHHHHHHhccccC--CC-ChhH--
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLP--------DKSKIILLARAQVAAAANHPFIAAESLAKIPDI--QH-MPAT--  222 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P--------~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~--~~-~p~~--  222 (467)
                      +-.|.-.++.+++++|+..|.+++...-        +....+ +-++++|...|++..-.+.....-+.  ++ .|.+  
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tv-lel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K   85 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATV-LELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK   85 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHH-HHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence            4556667889999999999999887621        122233 88999999999988766555444321  11 3333  


Q ss_pred             -HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          223 -VATLVALKE-RAGDIDGAAAVLDSAIKWWLNAMTEDNKL-SVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       223 -~~~l~~ly~-~~g~~~~A~~~l~~al~~~~~~~~~~~~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                       +.+|..-+. ....++..+.+++..++|..+...  ..+ ..+-..++.+++..|.|.+|+.+...++..
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E  154 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHE  154 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence             223322221 235678889999999988643110  011 112233577889999999999988877754

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.36  E-value=16  Score=39.59  Aligned_cols=73  Identities=15%  Similarity=0.114  Sum_probs=37.1

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      +..++|.+|+.++..+-.+.-.. .. +-..|+-|...|+|+-|..+|-+.-       ........|-+.|+.+.|..+
T Consensus       743 i~akew~kai~ildniqdqk~~s-~y-y~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKTAS-GY-YGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhcccc-cc-chHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHH
Confidence            34566667766666554433222 11 2345666666666666666665432       112223345555555555444


Q ss_pred             HH
Q 012265          243 LD  244 (467)
Q Consensus       243 l~  244 (467)
                      -+
T Consensus       814 a~  815 (1636)
T KOG3616|consen  814 AE  815 (1636)
T ss_pred             HH
Confidence            33

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.32  E-value=0.77  Score=32.39  Aligned_cols=37  Identities=14%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV   70 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v   70 (467)
                      ...+|..+.+.|++++|....+.+|+.+|+|..+..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4678999999999999999999999999998877653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.16  E-value=1.8  Score=36.74  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHhccc-cCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          120 IYANRVLLLLHANK---MDQARELVAALPD-MFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       120 l~~n~all~l~~~~---~~~A~~~~~~l~~-~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      -.||.+..+..+.+   ..+-+.+++.+.+ .+|.... ..+++|--+.+.|+|+.+++++..+++..|++..+
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            46788888887766   4566788888885 6676544 45567777889999999999999999999998764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.04  E-value=0.61  Score=48.67  Aligned_cols=100  Identities=16%  Similarity=0.058  Sum_probs=61.9

Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHhccccCCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          122 ANRVLLLLH-ANKMDQARELVAALPDMFPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       122 ~n~all~l~-~~~~~~A~~~~~~l~~~~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      +|.+-||.. .|+..+|..++..+....|..... .+-+|.++++.+-.-+|-.+|.+.+...-..+ ..++.++..|+.
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~  688 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLA  688 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHH
Confidence            344555554 466677777777666666653332 34556666666666677777777776663333 234667777777


Q ss_pred             cCChHHHHHHHhccccCCC-ChhH
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPAT  222 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~  222 (467)
                      ..+.+.|++.|+.+++.+. .|..
T Consensus       689 l~~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  689 LKNISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             HhhhHHHHHHHHHHHhcCCCChhh
Confidence            7777777777777776554 4443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=90.00  E-value=17  Score=38.83  Aligned_cols=111  Identities=17%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhc----------cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          125 VLLLLHANKMDQARELVAAL----------PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l----------~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      +-+++.+|..++|+.++-.-          .+.+-...+.....++-+.+...+.-|-++++++     ++   . -.++
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----gD---~-ksiV  780 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----GD---L-KSLV  780 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----cc---H-HHHh
Confidence            55666777777776654420          0111112222233333333444444455554443     11   1 2456


Q ss_pred             HHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA  246 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~a  246 (467)
                      |++.+.+++.+|..+-++..+.  .+.++.-.+..+....++++|.+.|.+|
T Consensus       781 qlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            7777778888877777765543  3455555566666666677666655554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.95  E-value=1.5  Score=34.93  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=16.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      .++.++...|++++|+..+++++...+.
T Consensus        46 ~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   46 NLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666655543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.85  E-value=0.58  Score=27.51  Aligned_cols=23  Identities=30%  Similarity=0.202  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHhc
Q 012265          190 LLARAQVAAAANHPFIAAESLAK  212 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~  212 (467)
                      ++.||.++..+|++++|..++++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhC
Confidence            46788888888888888887763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.51  E-value=0.92  Score=29.34  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      .+..|+.+|..+|++++|+.++++++..++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            4567788888888888888888888876644

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=89.23  E-value=12  Score=31.27  Aligned_cols=96  Identities=11%  Similarity=0.002  Sum_probs=60.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhC---CCc--------HHHHHHHHHHHHHHcCChHHHHHHHhccc-------cCCC
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKL---PDK--------SKIILLARAQVAAAANHPFIAAESLAKIP-------DIQH  218 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~---P~~--------~~~~~l~Laql~~~~g~~~~A~~~L~~~~-------~~~~  218 (467)
                      ..+.-.+..|-|++|..-|.++.+..   |..        ...++-.|+..+...|+|++++..-+..+       ++..
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            34445567777888877777776542   221        11345567888889999998887766665       3433


Q ss_pred             Chh-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          219 MPA-----TVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       219 ~p~-----~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      +.+     ++...+..+...|+.++|+..|+.+.+-...
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            332     3445566777899999999999988765433

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.19  E-value=4.3  Score=42.12  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             HHHHHHH-HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          123 NRVLLLL-HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       123 n~all~l-~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      +...-+| ..|-.+.|...+..     |   ..   +-.+.++.|+.+.|.++..+     -++..- +-.||.+.+.+|
T Consensus       299 ~~i~~fL~~~G~~e~AL~~~~D-----~---~~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~-W~~Lg~~AL~~g  361 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQFVTD-----P---DH---RFELALQLGNLDIALEIAKE-----LDDPEK-WKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHSS------H---HH---HHHHHHHCT-HHHHHHHCCC-----CSTHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHhhcCC-----h---HH---HhHHHHhcCCHHHHHHHHHh-----cCcHHH-HHHHHHHHHHcC
Confidence            3344444 46667888776543     2   22   22455788999999887543     233443 478999999999


Q ss_pred             ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265          202 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       202 ~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                      +++-|..+|.++-+       +..|..||.-.|+.+.-..+.+.+...      ++.+  ..+    ..++-.|+.++-+
T Consensus       362 ~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~------~~~n--~af----~~~~~lgd~~~cv  422 (443)
T PF04053_consen  362 NIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEER------GDIN--IAF----QAALLLGDVEECV  422 (443)
T ss_dssp             BHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHT------T-HH--HHH----HHHHHHT-HHHHH
T ss_pred             CHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHc------cCHH--HHH----HHHHHcCCHHHHH
Confidence            99999999999764       335667888899987766666655432      1111  111    2234457777777


Q ss_pred             HHHHH
Q 012265          282 HLFEE  286 (467)
Q Consensus       282 ~~le~  286 (467)
                      ++|.+
T Consensus       423 ~lL~~  427 (443)
T PF04053_consen  423 DLLIE  427 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=89.14  E-value=0.65  Score=27.12  Aligned_cols=30  Identities=13%  Similarity=0.251  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +..+|.++...|++++|...|+.+++.+|+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            445799999999999999999999987763

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.92  E-value=8.7  Score=43.11  Aligned_cols=85  Identities=19%  Similarity=0.152  Sum_probs=62.8

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHH
Q 012265          219 MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALV  298 (467)
Q Consensus       219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala  298 (467)
                      .|++|+.++...++.|...+|+..|-+|         +|+.   .+.++.....+.|.|++-+.++.-+.+.--....-.
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika---------dDps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA---------DDPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc---------CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence            6899999999999999999988877654         1222   245567778899999999999998887664444556


Q ss_pred             HHHHHhccCC-hhHHHHH
Q 012265          299 GLVTTSAHVD-VDKAESY  315 (467)
Q Consensus       299 ~Lv~a~~~~d-~~kA~~l  315 (467)
                      .|+.||+..+ ...-+.+
T Consensus      1171 eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             HHHHHHHHhchHHHHHHH
Confidence            7788887766 3444444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.58  E-value=0.96  Score=29.08  Aligned_cols=30  Identities=23%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhCChHHHHHH--HHHHhccCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGA--YTDIIKRNLA   63 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~--y~~~l~~~p~   63 (467)
                      +.-+|++++.+|++++|+.+  |.-+...++.
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            46689999999999999999  5466655553

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=88.17  E-value=1.3  Score=42.84  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=29.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                      +.+.-....|+.+.|..+|+.+++..|.++++.+-.+......++.-+|-.+|-+++...|.+..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            33333344444444444444444444444444444444433344444444444444444444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.00  E-value=6.4  Score=39.01  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-----ChHHHHHH
Q 012265          135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-----HPFIAAES  209 (467)
Q Consensus       135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-----~~~~A~~~  209 (467)
                      +....+++++++.+|++....+....+..+.-..++..+..++++..+|++...   ....|-..++     .+.....+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~L---W~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPEL---WREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHH---HHHHHHHHHHHhccCcHHHHHHH
Confidence            334556777777799988877766666666667778888999999999998653   3444444444     46677777


Q ss_pred             Hhcccc-------CC---C--Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          210 LAKIPD-------IQ---H--MP-------ATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       210 L~~~~~-------~~---~--~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      |.+++.       ..   +  .+       .++..+.....+.|..+.|+..++..+++
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence            777652       10   0  11       22344566677789999999999888775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.74  E-value=0.76  Score=26.98  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHH
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYT   55 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~   55 (467)
                      ..+.+|.++..+|+.++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45779999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.36  E-value=5.9  Score=36.67  Aligned_cols=126  Identities=15%  Similarity=0.018  Sum_probs=62.6

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      -+++.+...+|+.+.+.-++..|.+... +..|.++|+-.|+|+.|...|+-+..+.+...   ..+.+|..+=+.+.+.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~-RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t---~~a~lyr~lir~ea~R   85 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGG-RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT---VGASLYRHLIRCEAAR   85 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccc-hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc---hHHHHHHHHHHHHHHH
Confidence            3456666677777777777777766543 45667777777777777777666654432111   1223333322222222


Q ss_pred             H-HHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          241 A-VLDSAIKWWLNAMTED-NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       241 ~-~l~~al~~~~~~~~~~-~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      . +|.--.  -+....++ +.....++ .+..+-.-|..+.+..+=+.+++.-|.
T Consensus        86 ~evfag~~--~Pgflg~p~p~wva~L~-aala~h~dg~gea~~alreqal~aa~~  137 (273)
T COG4455          86 NEVFAGGA--VPGFLGGPSPEWVAALL-AALALHSDGAGEARTALREQALKAAPV  137 (273)
T ss_pred             HHHhccCC--CCCCcCCCCHHHHHHHH-HHHhcccCCcchHHHHHHHHHHhhCCC
Confidence            1 111000  00001111 22222233 355666666666666667777766554

>PF13041 PPR_2: PPR repeat family

Probab=86.78  E-value=2.9  Score=28.58  Aligned_cols=39  Identities=23%  Similarity=0.152  Sum_probs=32.3

Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHhc
Q 012265          267 AASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTSA  305 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~~  305 (467)
                      +...+.+.|++++|.++|++..+..  ||..+...++.+++
T Consensus         9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4566889999999999999999876  78777777776654

>PRK10941 hypothetical protein; Provisional

Probab=86.70  E-value=3.3  Score=39.90  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=28.2

Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD  215 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~  215 (467)
                      +.++++++.|+++.+.++...|+++..+ .-.|-+|.+.|.+..|..-|+.+++
T Consensus       191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~-RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        191 LMEEKQMELALRASEALLQFDPEDPYEI-RDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HHHcCcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            4455555555555555555555554433 3445555555555555555555544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=86.29  E-value=3.5  Score=40.38  Aligned_cols=94  Identities=11%  Similarity=-0.122  Sum_probs=76.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCch----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVM----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      .+.-|+...+|..|+..|.+.++..-++..    .+...|+.....|+|-.|+.-+..++...|.+.... +.=|+.++.
T Consensus        87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~-~R~Akc~~e  165 (390)
T KOG0551|consen   87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY-IRGAKCLLE  165 (390)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh-hhhhHHHHH
Confidence            577788889999999999988876544433    233567777788999999999999999999998764 777889999


Q ss_pred             cCChHHHHHHHhccccCCC
Q 012265          200 ANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..++.+|..+.+..+.++.
T Consensus       166 Le~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHhhhhhhhH
Confidence            9999999999998876543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=86.17  E-value=50  Score=35.08  Aligned_cols=149  Identities=15%  Similarity=0.116  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..+++.+...-..|..+-|...+....+.+ |..+...++.|.+-...|++..|..+|+.+.+..|+...+. +.-+.+.
T Consensus       332 efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~-l~~~~~e  410 (577)
T KOG1258|consen  332 EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVV-LRKINWE  410 (577)
T ss_pred             HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhH-HHHHhHH
Confidence            355666666667788888887777666554 56667788888888889999999999999999999887655 7778888


Q ss_pred             HHcCChHHHH---HHHhccccCCCChhHHHHH----HH-HHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          198 AAANHPFIAA---ESLAKIPDIQHMPATVATL----VA-LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       198 ~~~g~~~~A~---~~L~~~~~~~~~p~~~~~l----~~-ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      .+.|+.+.+.   ..+....+...++++...+    +. .|.-.++.+.|...+.+++..++       ....++.++..
T Consensus       411 ~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-------~~k~~~~~~~~  483 (577)
T KOG1258|consen  411 RRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP-------DCKVLYLELIR  483 (577)
T ss_pred             HHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-------ccHHHHHHHHH
Confidence            8999999998   5555555444455544332    22 23346788999999999987642       22334555555


Q ss_pred             HHHHCC
Q 012265          270 FKLRHG  275 (467)
Q Consensus       270 ~~l~~g  275 (467)
                      +.+.++
T Consensus       484 ~~~~~~  489 (577)
T KOG1258|consen  484 FELIQP  489 (577)
T ss_pred             HHHhCC
Confidence            555544

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.64  E-value=21  Score=37.78  Aligned_cols=163  Identities=18%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      +-.+|+|.+...+|+.+-|..+.++.|=..  |..++.    +..-..+..       +|.=..  ..|           
T Consensus       285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~--d~a~hp----~F~~~sg~c-------RL~y~~--~eN-----------  338 (665)
T KOG2422|consen  285 DSLLQVADIFRFQGDREMAADLIERGLYVF--DRALHP----NFIPFSGNC-------RLPYIY--PEN-----------  338 (665)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHHHH--HHHhcc----ccccccccc-------cCcccc--hhh-----------
Confidence            346899999999999999998888776321  111110    110011000       000000  000           


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchHHHHHHHHH-HhcCChhHHHHHHHHH-----HHhCCC
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVL-VRENKAGKAEELLGQF-----AEKLPD  184 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~~ll~a~l~-~~~~~~~~A~~~l~~~-----l~~~P~  184 (467)
                         .+.--+.+....-+-+.|-+.-|.+.|.-+++.+|. ++.+.++...+| ++..+|.=-|.+.+.+     +...|+
T Consensus       339 ---R~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN  415 (665)
T KOG2422|consen  339 ---RQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN  415 (665)
T ss_pred             ---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC
Confidence               011113344455556678899999999999999998 777777666665 5667776556555544     445677


Q ss_pred             cHHHHHHHHHHHHHHcCC---hHHHHHHHhccccCCCChhHHHHHH
Q 012265          185 KSKIILLARAQVAAAANH---PFIAAESLAKIPDIQHMPATVATLV  227 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~---~~~A~~~L~~~~~~~~~p~~~~~l~  227 (467)
                      -.-  .++||..|+....   ...|...+.+++.  +.|.++..|.
T Consensus       416 ~~y--S~AlA~f~l~~~~~~~rqsa~~~l~qAl~--~~P~vl~eLl  457 (665)
T KOG2422|consen  416 FGY--SLALARFFLRKNEEDDRQSALNALLQALK--HHPLVLSELL  457 (665)
T ss_pred             chH--HHHHHHHHHhcCChhhHHHHHHHHHHHHH--hCcHHHHHHH
Confidence            642  3788888888776   5677777777653  2455544433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.62  E-value=36  Score=32.87  Aligned_cols=226  Identities=12%  Similarity=0.048  Sum_probs=112.8

Q ss_pred             HHHHHHHhhhhhcCC-CCChhhHHhhhhhHHHHHHHHHHHhC-ChHHHHHHHHHHhcc----CC---Cch---HHHH---
Q 012265            5 YLIFVRIGQETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLG-NTQEAFGAYTDIIKR----NL---ADE---SSFA---   69 (467)
Q Consensus         5 l~~A~~~~~~~l~~~-~~~~ee~~~El~~i~~qlA~v~~~~G-~~~eA~~~y~~~l~~----~p---~d~---~~~~---   69 (467)
                      ++.|+.+...+=... -++++.. .+|+.+.+..|.-....+ ++++|...+++++..    ..   ..+   ...+   
T Consensus         9 ~~~A~~~~~K~~~~~~~~~~~~~-~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL   87 (278)
T PF08631_consen    9 LDLAEHMYSKAKDLLNSLDPDMA-EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL   87 (278)
T ss_pred             HHHHHHHHHHhhhHHhcCCcHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence            345555554433322 3344444 579999999999999999 999999999998777    21   111   2222   


Q ss_pred             -HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC
Q 012265           70 -VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF  148 (467)
Q Consensus        70 -va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~  148 (467)
                       ...+.++..+.......+.+.+..+....++                ...+.+-...+....+..+.+.+.+..++...
T Consensus        88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~----------------~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   88 RLLANAYLEWDTYESVEKALNALRLLESEYGN----------------KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC----------------CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence             1222232222222233333333222111111                11233233333344788999999999888654


Q ss_pred             C--CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcH-HHHHHHHHHHHHHcCC--hHHH--HHHHhcccc----
Q 012265          149 P--DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKS-KIILLARAQVAAAANH--PFIA--AESLAKIPD----  215 (467)
Q Consensus       149 P--~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~-~~~~l~Laql~~~~g~--~~~A--~~~L~~~~~----  215 (467)
                      +  +...-..+...-.........|...+..++-..  |... ..-...+..+++.++.  ....  +..+..+++    
T Consensus       152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~  231 (278)
T PF08631_consen  152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH  231 (278)
T ss_pred             ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH
Confidence            4  222222222222234555667777777666543  2221 1112344455554442  2222  333332221    


Q ss_pred             ---CCCChhH-------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          216 ---IQHMPAT-------VATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       216 ---~~~~p~~-------~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                         ....+..       +...+.-..+.++|+.|+.+|+-++
T Consensus       232 ~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  232 SLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence               1112221       1223455557788888888777554

It is also involved in sporulation [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.67  E-value=59  Score=34.54  Aligned_cols=160  Identities=18%  Similarity=0.115  Sum_probs=98.6

Q ss_pred             HcCCHHHHHHHHHhcc------------ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-----C----------
Q 012265          130 HANKMDQARELVAALP------------DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-----L----------  182 (467)
Q Consensus       130 ~~~~~~~A~~~~~~l~------------~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-----~----------  182 (467)
                      +++.|++|...|.-.+            ..+|-++...+..|.+...+|+.+-|-.++++.|-.     +          
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            3455677777666433            334666666777777788899999998888876531     2          


Q ss_pred             ------CCcHHHHHHH---HHHHHHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Q 012265          183 ------PDKSKIILLA---RAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALK-ERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       183 ------P~~~~~~~l~---Laql~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly-~~~g~~~~A~~~l~~al~~~  250 (467)
                            |++-.. +++   .-+-+...|-+.-|.++-.-++.+++  +|-....++.+| ++..+|.=.+.+++..-..-
T Consensus       330 RL~y~~~eNR~F-yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n  408 (665)
T KOG2422|consen  330 RLPYIYPENRQF-YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN  408 (665)
T ss_pred             cCcccchhhHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence                  344322 122   23445578999999999998888775  564444444444 45666766666665442110


Q ss_pred             HHhccCCchHHHHHHHHHHHHHHCCC---hhHHHHHHHHHHHhcCC
Q 012265          251 LNAMTEDNKLSVIMQEAASFKLRHGR---EEDASHLFEELVKTHGS  293 (467)
Q Consensus       251 ~~~~~~~~~~~~ll~~la~~~l~~g~---~~~A~~~le~ll~~~pd  293 (467)
                      .  ...-+++. .-..+|.||+....   -+.|...|.+++..+|-
T Consensus       409 ~--l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  409 K--LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             c--HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            0  00012221 12336888888665   46788999999988873

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=84.08  E-value=15  Score=30.12  Aligned_cols=29  Identities=14%  Similarity=0.130  Sum_probs=22.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          159 AAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                      |.-++..|++-+|+++++.++..++++..
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~   31 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDES   31 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence            44567788888899999988888887654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=83.80  E-value=5.3  Score=38.19  Aligned_cols=55  Identities=20%  Similarity=0.161  Sum_probs=36.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      .+..+++++.|....++.+..+|+++..+ .-.|-+|.+.|.+.-|+..|+.+++.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~ei-rDrGliY~ql~c~~vAl~dl~~~~~~  244 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEI-RDRGLIYAQLGCYHVALEDLSYFVEH  244 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhc-cCcHHHHHhcCCchhhHHHHHHHHHh
Confidence            45566777777777777777777766544 45566777777777777777765543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.68  E-value=17  Score=38.90  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                      -++.|.+..||...|+|.|.+.++++.+-+|.++.-.++.-.+.+.+++..+|+..+.......
T Consensus       395 K~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  395 KIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            4677889999999999999999999999999998877766667778999999998887766543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=83.61  E-value=14  Score=36.04  Aligned_cols=59  Identities=20%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          159 AAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      |.-..++|+.++|.++++.++...|+++..+ +-++++....++.-+|-.+|-+++.+.+
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L-~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQIL-IEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHH-HHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            3445689999999999999999999999865 8899999999999999999999987754

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.53  E-value=9.5  Score=35.35  Aligned_cols=64  Identities=19%  Similarity=0.063  Sum_probs=56.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      ..-++..+++++++.....-++..|.+.....+.-.+|+-.|+|++|..-|+-+....|++...
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~   71 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG   71 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence            4467889999999999999999999999888888899999999999999999888888887543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.47  E-value=8.9  Score=35.06  Aligned_cols=73  Identities=15%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             hcCChhHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHcCChHHHHHHHhccccC-----CCChhHHHHHHHHHHHcCCH
Q 012265          164 RENKAGKAEELLGQFAEKLP--DKSKIILLARAQVAAAANHPFIAAESLAKIPDI-----QHMPATVATLVALKERAGDI  236 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P--~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~~~p~~~~~l~~ly~~~g~~  236 (467)
                      ..-.-.+|.+.+.++ +..|  +++. +.+.||-.|. ..+.++|+..|.+++++     .++|.++..|+++|.++|++
T Consensus       118 sr~~d~~A~~~fL~~-E~~~~l~t~e-lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  118 SRFGDQEALRRFLQL-EGTPELETAE-LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hccCcHHHHHHHHHH-cCCCCCCCHH-HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            333344566555443 2233  2443 5688887776 67889999999888753     34888999999999999998


Q ss_pred             HHH
Q 012265          237 DGA  239 (467)
Q Consensus       237 ~~A  239 (467)
                      +.|
T Consensus       195 e~A  197 (203)
T PF11207_consen  195 EQA  197 (203)
T ss_pred             hhh
Confidence            876

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.22  E-value=1.5  Score=29.59  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKR   60 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~   60 (467)
                      .+-||.+|..+|+.+.|..+++.++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            456899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.07  E-value=3.9  Score=38.01  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC
Q 012265            3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL   62 (467)
Q Consensus         3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p   62 (467)
                      .||..|...+.++++.++...+. .+|. .+.+.+|.+..+.|++++|...|.+++...-
T Consensus       139 ~fl~~Al~~y~~a~~~e~~~~~~-~~~~-~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  139 RFLRKALEFYEEAYENEDFPIEG-MDEA-TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCC-chHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            58999999999999988764433 2333 4567799999999999999999999998744

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=82.95  E-value=29  Score=32.77  Aligned_cols=166  Identities=13%  Similarity=0.004  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVA  197 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~l~Laql~  197 (467)
                      ...|.++-+.+++++....+.++...+|+-.  .-.++..+.-..-|..-.+.+.+..........  ...  ..+.+-|
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~--~~~i~~y   82 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQ--VKLIKDY   82 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH--HHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHH--HHHHHHH
Confidence            4568888899999999999999998877532  222333222233344455566665554443221  111  2222222


Q ss_pred             HHc--C----ChHHHHHHHhcccc-CCCChhH----HHHHHHHHHH---cC-------CHHHHHHHHHHHHHHHHH-hcc
Q 012265          198 AAA--N----HPFIAAESLAKIPD-IQHMPAT----VATLVALKER---AG-------DIDGAAAVLDSAIKWWLN-AMT  255 (467)
Q Consensus       198 ~~~--g----~~~~A~~~L~~~~~-~~~~p~~----~~~l~~ly~~---~g-------~~~~A~~~l~~al~~~~~-~~~  255 (467)
                      ...  .    --.+.+.++...+- ...++..    +-..|..|.-   -.       -.+.|...|++|...-.. -++
T Consensus        83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~  162 (236)
T PF00244_consen   83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP  162 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence            110  1    11233333333321 0011211    1111222221   11       126777888888877655 344


Q ss_pred             CCchHHHHHHHHHHHHHH-CCChhHHHHHHHHHHH
Q 012265          256 EDNKLSVIMQEAASFKLR-HGREEDASHLFEELVK  289 (467)
Q Consensus       256 ~~~~~~~ll~~la~~~l~-~g~~~~A~~~le~ll~  289 (467)
                      .+|-...+.+..+.||.. .|+.++|..+-++++.
T Consensus       163 ~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  163 THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            445444455555666644 8999999987777765

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.91  E-value=22  Score=38.01  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .-..|+.+-+...++++...++.-......+....+..|..+-.-++.++|-.+|+.++.+||++.   ++-.|+-+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   87 (578)
T PRK15490         11 LGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA---RYEYARRLYNT   87 (578)
T ss_pred             hhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch---HHHHHHHHHhh
Confidence            344577777778899998888875544444445577888888888999999999999999999953   47789999999


Q ss_pred             CChHHHHHHHhccccCC-CC-h---hHHHHHHHHHHHcC-CH-----HHHHHHHHHHHHHHHHh
Q 012265          201 NHPFIAAESLAKIPDIQ-HM-P---ATVATLVALKERAG-DI-----DGAAAVLDSAIKWWLNA  253 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~-~~-p---~~~~~l~~ly~~~g-~~-----~~A~~~l~~al~~~~~~  253 (467)
                      |-...|..+|.++.+-- .. .   +-+.....+|.+.+ +-     .-.+-.++.++-++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (578)
T PRK15490         88 GLAKDAQLILKKVSNGVQKKYNNYLGKINKICDLLERLEGKAIPVGTNTCIIAMKHAILFYRNR  151 (578)
T ss_pred             hhhhHHHHHHHHhCccHhHHHHHHHHHHHHHHHHHHHhccCCCCCccchHHHHHHHHHhhhhcc
Confidence            99999999999775421 10 1   11122233444432 21     12455677788777664

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.61  E-value=52  Score=32.37  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhc--------
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIK-WWLNAM--------  254 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~-~~~~~~--------  254 (467)
                      ..+..+.+...+|+++-|...+.++.....     .|.+....+.++-..|+..+|+..++..+. ......        
T Consensus       148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~  227 (352)
T PF02259_consen  148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL  227 (352)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            347888999999999999999888876431     466666778888889999999998888776 222110        


Q ss_pred             ------------------cCCchHHHHHHHHHHHHHHC------CChhHHHHHHHHHHHhcCC-HHHHHHHHH
Q 012265          255 ------------------TEDNKLSVIMQEAASFKLRH------GREEDASHLFEELVKTHGS-IEALVGLVT  302 (467)
Q Consensus       255 ------------------~~~~~~~~ll~~la~~~l~~------g~~~~A~~~le~ll~~~pd-~~ala~Lv~  302 (467)
                                        ........++..+|.+....      +..+++...|..+++.+|. ..++..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                              00112334555567777666      8889999999999999875 344444433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.18  E-value=1.4  Score=29.79  Aligned_cols=24  Identities=21%  Similarity=0.015  Sum_probs=13.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccc
Q 012265          191 LARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      |.||..|+..|+++.|..+|+.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            445555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.90  E-value=4.9  Score=41.28  Aligned_cols=84  Identities=7%  Similarity=-0.023  Sum_probs=40.1

Q ss_pred             HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHH
Q 012265          130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAES  209 (467)
Q Consensus       130 ~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~  209 (467)
                      ..|++-.|.+.+..++..+|+.+...++.+.+....|.|+.|...+..+-..-....... -++-+-....|++++|...
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~-~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL-RCRLRSLHGLARWREALST  379 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH-HHHHHhhhchhhHHHHHHH
Confidence            345555555555555555555555555555555555666555555543322211111111 2233344455555555555


Q ss_pred             Hhccc
Q 012265          210 LAKIP  214 (467)
Q Consensus       210 L~~~~  214 (467)
                      -+-++
T Consensus       380 a~~~l  384 (831)
T PRK15180        380 AEMML  384 (831)
T ss_pred             HHHHh
Confidence            55444

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=81.88  E-value=16  Score=36.13  Aligned_cols=131  Identities=16%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHHcCChHHHHHHHhccccC---CCCh--
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEK--LPDK--------SKIILLARAQVAAAANHPFIAAESLAKIPDI---QHMP--  220 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~--------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~~p--  220 (467)
                      +-.+..+...+++.+++.+|..++..  .|.+        ...+ +-++++|.+.|++++-...+...-..   -..+  
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~I-lel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka   86 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSI-LELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA   86 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            34455566777788888888888773  1211        1123 67788888888877766665554321   0111  


Q ss_pred             -hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          221 -ATVATLVALKER-AGDIDGAAAVLDSAIKWWLNAMTEDNKL-SVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       221 -~~~~~l~~ly~~-~g~~~~A~~~l~~al~~~~~~~~~~~~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                       .++..|+..... -+..+.-+.++...++|......  ..+ ..+-..++.+|+..++|.+|+.+...++.
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~r  156 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLR  156 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             123344444433 34556677777777776543210  111 11222345666777777777766655554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.70  E-value=6.5  Score=40.43  Aligned_cols=51  Identities=10%  Similarity=0.024  Sum_probs=43.1

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      ...|+.-.|-+-+..++..+|.++..+ ++.+.+....|.|+.|.+.+..+.
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i-~l~~~i~~~lg~ye~~~~~~s~~~  350 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLI-QLRSVIFSHLGYYEQAYQDISDVE  350 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhh-HHHHHHHHHhhhHHHHHHHhhchh
Confidence            467888888888999999999988765 677889999999999999887663

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=81.53  E-value=14  Score=37.25  Aligned_cols=107  Identities=19%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc--cCCCChhHHH-HHHHHHHHcCCHHHHH-HHHH
Q 012265          169 GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP--DIQHMPATVA-TLVALKERAGDIDGAA-AVLD  244 (467)
Q Consensus       169 ~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~--~~~~~p~~~~-~l~~ly~~~g~~~~A~-~~l~  244 (467)
                      -+|+-+|+.++...|.+... ++.|+++|...|-...|...|..+-  .++.  +.++ .+..-+...|....+. .+++
T Consensus       200 ~~Ai~lLE~~l~~s~~n~~~-~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~--DTL~h~~~~r~~~~~~~~~~~~~~~~  276 (365)
T PF09797_consen  200 LQAIALLEHALKKSPHNYQL-KLLLVRLYSLLGAGSLALEHYESLDIKNIQL--DTLGHLILDRLSTLGPFKSAPENLLE  276 (365)
T ss_pred             HHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHhcChHHHHH--HHhHHHHHHHHhccCcccccchHHHH
Confidence            47899999999999999874 6999999999999999999998763  1111  1111 2223333456666766 8888


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH
Q 012265          245 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE  285 (467)
Q Consensus       245 ~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le  285 (467)
                      .+..+|.....+   ...    ....-++.|.|.+..++.+
T Consensus       277 ~~~~fy~~~~~~---~~e----~i~~af~~gsysKi~ef~~  310 (365)
T PF09797_consen  277 NALKFYDNSEKE---TPE----FIIKAFENGSYSKIEEFIE  310 (365)
T ss_pred             HHHHHHHHHHHH---HHH----HHHHHHhCCCchhHHHHHH
Confidence            888888653321   111    1222357888876665443

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=81.13  E-value=42  Score=38.53  Aligned_cols=24  Identities=4%  Similarity=-0.025  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhc
Q 012265          121 YANRVLLLLHANKMDQARELVAAL  144 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l  144 (467)
                      .+.+..+..+.++|+.|...+..+
T Consensus       883 ~~rkF~ID~~L~ry~~AL~hLs~~  906 (1265)
T KOG1920|consen  883 LLRKFKIDDYLKRYEDALSHLSEC  906 (1265)
T ss_pred             hhhheeHHHHHHHHHHHHHHHHHc
Confidence            345566666777777776666554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.43  E-value=17  Score=37.15  Aligned_cols=62  Identities=18%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH----HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAI----KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al----~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      .|..++.-.||+..|++.++..-    ..|...+   .....++..+|..|+.+++|.+|+.+|..++-
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~---~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP---ACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCc---chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778899999988887421    0111222   22334566689999999999999999999875

>PF12854 PPR_1: PPR repeat

Probab=80.16  E-value=4.3  Score=25.49  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=16.7

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265          220 PATVATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       220 p~~~~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                      .-.+..|+..|.+.|+.++|..+|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34456666667777777777666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 8e-09
 Identities = 82/453 (18%), Positives = 146/453 (32%), Gaps = 130/453 (28%)

Query: 4   MYLIFVRIGQETLTDD-NFAEDDIEIE-LAPIAVQLAYVQQL--LGNTQEAFGAYT---- 55
           M   FV   +E L  +  F    I+ E   P  +   Y++Q   L N  + F  Y     
Sbjct: 78  MVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 56  ---DIIKRNL-ADESSFAVAVNN--------LVAL----KGPKDVND------SLKKLDR 93
                +++ L     +  V ++         +          +   D      +LK  + 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 94  IKE--KDMQNFQLARVLDLRLSPKQREAI-YANRVLLLLHANKMDQARELVAALPDMFPD 150
            +   + +Q       L  ++ P       +++ + L +H+ +  + R L+ + P  + +
Sbjct: 195 PETVLEMLQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKP--YEN 245

Query: 151 SVMPLLLQAAVL--VRENKAGKAEELLGQFAEKLPD-KSKIILLAR-AQVAAAAN----- 201
                LL   VL  V+  KA  A      F     +   KI+L  R  QV    +     
Sbjct: 246 C----LL---VLLNVQNAKAWNA------F-----NLSCKILLTTRFKQVTDFLSAATTT 287

Query: 202 --------HPFIAAES---LAKIPDI--QHMPATVAT----LVALKERAGDIDGAAAVLD 244
                         E    L K  D   Q +P  V T     +++      I  A ++ D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------I--AESIRD 339

Query: 245 SAIKW--WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV----KTHGSIEALV 298
               W  W +   +  KL+ I++  +S  L      +   +F+ L       H     L 
Sbjct: 340 GLATWDNWKHVNCD--KLTTIIE--SS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 299 GLVTTSAHVDVDK--AESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGE 356
            +       DV     + ++  L        V+    E T     +    Y E+      
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSL--------VEKQPKESTISIPSI----YLELKV---- 437

Query: 357 GKNKDKAKKKRKRKPRY--PKGFDPANPGPPPD 387
            K +++    R     Y  PK FD  +  PP  
Sbjct: 438 -KLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA 160
           ++Q       R+ P   E      V L        +   ++  +       +  + + A 
Sbjct: 14  SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAE 73

Query: 161 VLVRENKAGKA-EELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM 219
            L   ++      EL  + +  +   +   LL  A +     +P  A  +L +   ++ M
Sbjct: 74  YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM 133

Query: 220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279
             TV  L+ L      +D A   L            ED  L+ +     S      + +D
Sbjct: 134 AMTVQILLKL----DRLDLARKELKKMQDQD-----EDATLTQLATAWVSLAAGGEKLQD 184

Query: 280 ASHLFEELVKTHG-SIEALVGLVTTSAHV-DVDKAESY 315
           A ++F+E+      ++  L G           + AE  
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.74
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.71
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.69
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.68
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.67
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.58
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.5
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.49
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.48
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.41
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.41
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.39
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.33
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.28
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.28
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.28
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.24
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.2
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.18
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.12
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.1
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.1
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.0
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.99
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.98
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.98
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.97
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.97
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.96
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.93
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.91
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.9
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.9
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.89
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.88
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.87
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.86
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.86
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.83
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.83
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.82
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.82
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.78
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.71
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.67
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.62
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.61
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.61
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.55
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.45
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.43
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.27
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.05
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.96
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.77
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.53
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.4
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.65
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.62
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.42
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.34
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.97
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.64
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.3
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.18
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.53
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.43
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.12
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.08
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.88
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.5
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.42
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.05
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.99
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.86
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.8
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.01
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.31
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.12
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.89
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	82.63
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.06
2p58_C	116	Putative type III secretion protein YSCG; type III	80.7
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	80.47

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1.9e-20  Score=187.76  Aligned_cols=295  Identities=13%  Similarity=0.072  Sum_probs=197.2

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .++.|...++..+..+        +....++..+|.++..+|++++|+..|++++..+|++..++...+..+...++...
T Consensus        48 ~~~~a~~~~~~a~~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  119 (388)
T 1w3b_A           48 RLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG  119 (388)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH
T ss_pred             CHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH
Confidence            4567777777777533        23446678888888899999999999999888888887766544444444444444


Q ss_pred             hhHHHHhhhhhhhhhhhHHH-----------------HHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 012265           84 VNDSLKKLDRIKEKDMQNFQ-----------------LARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAAL  144 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~-----------------~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l  144 (467)
                      +...+..+...   .|+...                 ....++.  ++. +.....+++.+.++...|++++|...++++
T Consensus       120 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  195 (388)
T 1w3b_A          120 AVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             HHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44433333222   111000                 0000000  000 112345667777778888888888888888


Q ss_pred             cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          145 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       145 ~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      +..+|++..++...+.++...|++++|+..+++++..+|++... +..++.+|..+|++++|+..|+++++..+ .+.++
T Consensus       196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T 1w3b_A          196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence            88888887777777777888888888888888888888877654 47778888888888888888888877654 56677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHH
Q 012265          224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVT  302 (467)
Q Consensus       224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~  302 (467)
                      ..++.+|...|++++|+.+|++++...    |.+   ...+..+|.++...|++++|..+|+++++.+|+ ..++..+..
T Consensus       275 ~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          275 CNLANALKEKGSVAEAEDCYNTALRLC----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            777888888888888888888877652    111   234555778888888888888888888877765 455666666


Q ss_pred             Hh-ccCChhHHHHHHhc
Q 012265          303 TS-AHVDVDKAESYEKR  318 (467)
Q Consensus       303 a~-~~~d~~kA~~l~~~  318 (467)
                      ++ ...+.+.|..+.+.
T Consensus       348 ~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          348 VLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHTTTCCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            65 34456777666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=3.9e-20  Score=185.48  Aligned_cols=296  Identities=11%  Similarity=0.048  Sum_probs=201.4

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .++.|++.|.+.+..+   +     +-..++..++.++..+|++++|...++.++..+|.+..++...+..+...++   
T Consensus        14 ~~~~A~~~~~~~~~~~---p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~---   82 (388)
T 1w3b_A           14 DFEAAERHCMQLWRQE---P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ---   82 (388)
T ss_dssp             CHHHHHHHHHHHHHHC---T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhC---C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---
Confidence            4678999999888754   2     2235677899999999999999999999999999998888766555544443   


Q ss_pred             hhHHHHhhhhhhhhhhhHHH----HHHHh--hcCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 012265           84 VNDSLKKLDRIKEKDMQNFQ----LARVL--DLRLS------------PKQREAIYANRVLLLLHANKMDQARELVAALP  145 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~----~~~~l--~~kL~------------~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~  145 (467)
                      ..++...+.+.....|+...    +...+  ..+..            .+....++.+.+.++...|++++|...+++++
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34444444433222222110    00000  00000            00112345566777777777777777777777


Q ss_pred             ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH
Q 012265          146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA  224 (467)
Q Consensus       146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~  224 (467)
                      ..+|++..++...+.++...|++++|+..+++++..+|++... ++.++.++...|++++|+..|++++.+.+ ++.++.
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA-YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            7777777777777777777778888888888877777777664 37777788888888888888877776554 456677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT  303 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a  303 (467)
                      .++.+|...|++++|+..|++++...    |   .....+..+|.++...|++++|..+|+++++.+|+ ..++..+..+
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQ----P---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC----S---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            77888888888888888888877631    1   12234566788888888888888888888888764 5666666666


Q ss_pred             hc-cCChhHHHHHHhc
Q 012265          304 SA-HVDVDKAESYEKR  318 (467)
Q Consensus       304 ~~-~~d~~kA~~l~~~  318 (467)
                      +. ..+.+.|..+..+
T Consensus       315 ~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHTTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            63 4557777766654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=1e-19  Score=176.67  Aligned_cols=269  Identities=11%  Similarity=0.048  Sum_probs=219.7

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..+.+.+|.++..+|++++|+.+|++++..+|.+...+...+..+...+   +..++...+.++....++          
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~----------   88 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN---KANELFYLSHKLVDLYPS----------   88 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTT----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcC----------
Confidence            3567889999999999999999999999999988877764444444443   455555555444332211          


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                            ...++++.+.+++..| ++++|...+++++..+|++..++...|.++...|++++|+..+++++...|++....
T Consensus        89 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  162 (330)
T 3hym_B           89 ------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM  162 (330)
T ss_dssp             ------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred             ------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence                  2246788999999999 999999999999999999999999999999999999999999999999999986654


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC--chHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED--NKLSVIMQE  266 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~--~~~~~ll~~  266 (467)
                       +.+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...+......  +....++..
T Consensus       163 -~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  241 (330)
T 3hym_B          163 -LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN  241 (330)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred             -HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence             7899999999999999999999998765 677888999999999999999999999998764322110  222235667


Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhcC
Q 012265          267 AASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRL  319 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~L  319 (467)
                      +|.++...|++++|...|+++++.+|+ ..++..+..++ ...+.+.|..+..+.
T Consensus       242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            899999999999999999999999875 56777777776 456788998887664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=2.6e-19  Score=189.33  Aligned_cols=285  Identities=10%  Similarity=0.004  Sum_probs=229.2

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      +..|.+++.+.+..    +     .-..++..+|.+|...|++++|+.+|++++...|.+..++......+...+   +.
T Consensus       288 ~~~A~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~  355 (597)
T 2xpi_A          288 LRRAEDYLSSINGL----E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG---EK  355 (597)
T ss_dssp             HHHHHHHHHTSTTG----G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT---CH
T ss_pred             HHHHHHHHHHhhcC----C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC---CH
Confidence            45677777666642    1     234678899999999999999999999999999988777665544443333   44


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                      .++...+.++....+                ....++++.+.++...|++++|.+.+++++..+|++..++...+.++..
T Consensus       356 ~~A~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  419 (597)
T 2xpi_A          356 NKLYLISNDLVDRHP----------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI  419 (597)
T ss_dssp             HHHHHHHHHHHHHCT----------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCc----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            555555544322211                1234677889999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL  243 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l  243 (467)
                      .|++++|+.+|++++...|++... +..++.+|...|++++|+.+|+++++..+ ++.++..++.+|.+.|++++|+.+|
T Consensus       420 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  498 (597)
T 2xpi_A          420 EGEHDQAISAYTTAARLFQGTHLP-YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF  498 (597)
T ss_dssp             HTCHHHHHHHHHHHHHTTTTCSHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999988765 48899999999999999999999987654 6788889999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++++...+..+..+......+..+|.++...|++++|..+|+++++.+|+ ..++..+..+| ...+.+.|..+.++
T Consensus       499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99998765432222223456777899999999999999999999999974 67777887777 45668888777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=9.1e-19  Score=171.57  Aligned_cols=295  Identities=10%  Similarity=0.042  Sum_probs=225.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      -+..|...+++.+..+.        +...++..+|.++..+|++++|+..|++++...|.+..++...+..+...+   +
T Consensus        18 ~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~   86 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDP--------DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---K   86 (359)
T ss_dssp             CHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---C
T ss_pred             CHHHHHHHHHHHHhhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---C
Confidence            35678888888876432        223578899999999999999999999999999988877765555444443   4


Q ss_pred             hhHHHHhhhhhhhhhh---hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDM---QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA  160 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~---~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~  160 (467)
                      ..++...+.+.....+   +.......+    .........++.+.++...|++++|...++.++..+|++..++...+.
T Consensus        87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNPSEQEEKEAESQL----VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCcccChHHHHHHH----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            4555555554433322   221111111    001112234566899999999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH------------HHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA------------TLV  227 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~------------~l~  227 (467)
                      ++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|+++++..+ .+..+.            .++
T Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAASKLKSDNTEA-FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCSCCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876 48999999999999999999999987654 333322            347


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-  304 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-  304 (467)
                      .++...|++++|+..|++++...    +.+.. ...++..+|.++...|++++|...|+++++.+|+ ..++..+..++ 
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL  317 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            78999999999999999999753    22222 2234556799999999999999999999999975 67777777776 


Q ss_pred             ccCChhHHHHHHhc
Q 012265          305 AHVDVDKAESYEKR  318 (467)
Q Consensus       305 ~~~d~~kA~~l~~~  318 (467)
                      ...+.+.|..+.++
T Consensus       318 ~~g~~~~A~~~~~~  331 (359)
T 3ieg_A          318 IEEMYDEAIQDYEA  331 (359)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            45668888777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.7e-19  Score=175.05  Aligned_cols=267  Identities=11%  Similarity=0.048  Sum_probs=216.4

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      ....|..+|++.+..+..        -..++..++.++..+|++++|...|++++..+|.+..++...+.-+...+  .+
T Consensus        37 ~~~~A~~~~~~~l~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~  106 (330)
T 3hym_B           37 DFKMCYKLTSVVMEKDPF--------HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HK  106 (330)
T ss_dssp             CHHHHHHHHHHHHHHCTT--------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SC
T ss_pred             CHHHHHHHHHHHHHcCCC--------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hh
Confidence            357788888888865432        22445668899999999999999999999999998888776554443332  14


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV  163 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~  163 (467)
                      ...+...+.+.....++                ...++++.+.++...|++++|...+++++..+|++..++...+.++.
T Consensus       107 ~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B          107 NEHARRYLSKATTLEKT----------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHTTCTT----------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            55566666554332211                12467889999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----------CCChhHHHHHHHHHHHc
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----------QHMPATVATLVALKERA  233 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----------~~~p~~~~~l~~ly~~~  233 (467)
                      ..|++++|+..+++++..+|++... +..+|.+|...|++++|+..|+++++.          ...+.++..++.+|...
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  249 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFV-MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL  249 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875 489999999999999999999999753          22456788999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS  304 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~  304 (467)
                      |++++|+..|++++...    +.+   ..++..+|.++...|++++|...|+++++.+|+ ..++..+..++
T Consensus       250 g~~~~A~~~~~~a~~~~----~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          250 KKYAEALDYHRQALVLI----PQN---ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             TCHHHHHHHHHHHHHHS----TTC---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhhC----ccc---hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            99999999999999763    222   234666899999999999999999999999975 56677777666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=8.8e-19  Score=178.43  Aligned_cols=296  Identities=10%  Similarity=0.038  Sum_probs=224.9

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|..++++.+..+        ++...++..+|.++..+|++++|+..|++++..+|.+..++...+..+...+   +
T Consensus        41 ~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~  109 (450)
T 2y4t_A           41 QLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG---K  109 (450)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---C
T ss_pred             CHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---C
Confidence            3566777777777532        1234678889999999999999999999999999988777765544444333   4


Q ss_pred             hhHHHHhhhhhhhhhhhHH---HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNF---QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA  160 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~---~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~  160 (467)
                      ..++...+.+.....++..   .....+    .........++.+.+++..|++++|...++.++..+|++..++...+.
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  185 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQL----IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE  185 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            5555555554433322211   111111    000112235677889999999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH------------H
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL------------V  227 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l------------~  227 (467)
                      ++...|++++|+..+++++..+|++...+ +.+|.+|...|++++|+..|++++...+ .+..+..+            +
T Consensus       186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          186 CFIKEGEPRKAISDLKAASKLKNDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             HHHHTTCGGGGHHHHHHHHHHHCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998754 8999999999999999999999987654 44444444            8


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-  304 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-  304 (467)
                      .++...|++++|+.+|++++...    +.++. ...++..+|.++...|++++|+..|++++..+|+ ..++..+..++ 
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            89999999999999999999753    22222 2335666899999999999999999999999975 67777777776 


Q ss_pred             ccCChhHHHHHHhcC
Q 012265          305 AHVDVDKAESYEKRL  319 (467)
Q Consensus       305 ~~~d~~kA~~l~~~L  319 (467)
                      ...+.+.|..+.++.
T Consensus       341 ~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          341 IEEMYDEAIQDYETA  355 (450)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH
Confidence            566788888777653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.85  E-value=4.6e-20  Score=183.18  Aligned_cols=260  Identities=10%  Similarity=-0.011  Sum_probs=204.0

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|.++..+|++++|+.+|++++..+|.+..++...+.-+...   ++...+...+.+.....|+           
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~-----------  131 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN---ENEQAAIVALQRCLELQPN-----------  131 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-----------
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCC-----------
Confidence            34789999999999999999999999999999988877555544433   3455666666554332221           


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH----------HHHHHhcCChhHHHHHHHHHHHh
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ----------AAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~----------a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                           ...++++.+.++...|++++|...+++++..+|++.......          +.++...|++++|+..+++++..
T Consensus       132 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  206 (365)
T 4eqf_A          132 -----NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ  206 (365)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence                 235788999999999999999999999999998876554433          77888999999999999999999


Q ss_pred             CCC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265          182 LPD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN  258 (467)
Q Consensus       182 ~P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~  258 (467)
                      +|+  +... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...    +   
T Consensus       207 ~p~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p---  278 (365)
T 4eqf_A          207 NGDMIDPDL-QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----P---  278 (365)
T ss_dssp             SCSSCCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred             CcCccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C---
Confidence            999  7765 48999999999999999999999998665 67788999999999999999999999999862    2   


Q ss_pred             hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-------------HHHHHHHHHHhccCC-hhHHHHHHhc
Q 012265          259 KLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-------------IEALVGLVTTSAHVD-VDKAESYEKR  318 (467)
Q Consensus       259 ~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-------------~~ala~Lv~a~~~~d-~~kA~~l~~~  318 (467)
                      .....+..+|.++...|++++|...|+++++..|+             ..++..|..++...+ .+.+.....+
T Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            22345677899999999999999999999998865             355666777765443 5666665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=4.2e-18  Score=166.80  Aligned_cols=263  Identities=16%  Similarity=0.132  Sum_probs=208.7

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|.++...|++++|+..|++++..+|.+..++...+..+...+   +...+...+.+.....|+           
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~-----------   69 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMD-----------   69 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTT-----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-----------
Confidence            457889999999999999999999999999999888776555554443   455555555544322211           


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---CCchHHHHH------------HHHHHhcCChhHHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---DSVMPLLLQ------------AAVLVRENKAGKAEELLG  176 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~~~~~~ll~------------a~l~~~~~~~~~A~~~l~  176 (467)
                           ...++++.+.+++..|++++|...+++++..+|   ++..++...            |.++...|++++|+..++
T Consensus        70 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  144 (359)
T 3ieg_A           70 -----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD  144 (359)
T ss_dssp             -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence                 224678999999999999999999999999999   777766544            678899999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 012265          177 QFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT  255 (467)
Q Consensus       177 ~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~  255 (467)
                      +++..+|++... +..+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...+    
T Consensus       145 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----  219 (359)
T 3ieg_A          145 KILEVCVWDAEL-RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ----  219 (359)
T ss_dssp             HHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred             HHHHhCCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence            999999999875 48999999999999999999999998765 778888999999999999999999999987532    


Q ss_pred             CCchHHHH---------HHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-----HHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          256 EDNKLSVI---------MQEAASFKLRHGREEDASHLFEELVKTHGSI-----EALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       256 ~~~~~~~l---------l~~la~~~l~~g~~~~A~~~le~ll~~~pd~-----~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      +.......         ....|.++...|++++|+..|++++...|+.     .++..+..++ ...+.+.|..+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  297 (359)
T 3ieg_A          220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE  297 (359)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            22221111         1234888999999999999999999999863     2233445555 45668888777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.83  E-value=2.6e-19  Score=165.92  Aligned_cols=198  Identities=19%  Similarity=0.108  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..+++.+|.++..+|++++|+..|++++..+|++..+                                           
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------------------------------------------   41 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-------------------------------------------   41 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-------------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------------------------
Confidence            3567899999999999999999999999998865432                                           


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc-----------CChhHHHHHHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE-----------NKAGKAEELLGQFA  179 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~-----------~~~~~A~~~l~~~l  179 (467)
                                +++.+.+++..|++++|+..++++++.+|++..++...+.++...           |++++|+..|++++
T Consensus        42 ----------~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  111 (217)
T 2pl2_A           42 ----------LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE  111 (217)
T ss_dssp             ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence                      345577778889999999999999999999999999999999999           99999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265          180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK  259 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~  259 (467)
                      +.+|++.... +.+|.+|...|++++|+..|++++++..++.++..++.+|..+|++++|+..|++++...    |+   
T Consensus       112 ~~~P~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----P~---  183 (217)
T 2pl2_A          112 RVNPRYAPLH-LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQA----PK---  183 (217)
T ss_dssp             HHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TT---
T ss_pred             HhCcccHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---
Confidence            9999998764 899999999999999999999998765667888899999999999999999999999863    22   


Q ss_pred             HHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          260 LSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      ...++..+|.++...|++++|+..|+++.-
T Consensus       184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          184 DLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             CHHHHHHHHHHHTC----------------
T ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            224566689999999999999999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=4.7e-19  Score=175.36  Aligned_cols=258  Identities=10%  Similarity=0.023  Sum_probs=207.3

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|.++..+|++++|+..|++++..+|.+..++...+.-+...   ++...+...+.+.....|            
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~------------  129 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN---EQELLAISALRRCLELKP------------  129 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---cCHHHHHHHHHHHHhcCC------------
Confidence            45788999999999999999999999999999988776554444333   345556655554432221            


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH----------------HHHHHHHhcCChhHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL----------------LQAAVLVRENKAGKAEELL  175 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l----------------l~a~l~~~~~~~~~A~~~l  175 (467)
                          ....++++.+.++...|++++|...+++++..+|++.....                ..+.++ ..|++++|+..+
T Consensus       130 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~  204 (368)
T 1fch_A          130 ----DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELF  204 (368)
T ss_dssp             ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHH
Confidence                12346788999999999999999999999999999876643                233444 899999999999


Q ss_pred             HHHHHhCCC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          176 GQFAEKLPD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       176 ~~~l~~~P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      ++++..+|+  +... ++.+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...  
T Consensus       205 ~~a~~~~p~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--  281 (368)
T 1fch_A          205 LAAVRLDPTSIDPDV-QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--  281 (368)
T ss_dssp             HHHHHHSTTSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhCcCcccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            999999999  6654 48899999999999999999999987655 67788899999999999999999999999752  


Q ss_pred             hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC------------HHHHHHHHHHhcc-CChhHHHHHHh
Q 012265          253 AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------------IEALVGLVTTSAH-VDVDKAESYEK  317 (467)
Q Consensus       253 ~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd------------~~ala~Lv~a~~~-~d~~kA~~l~~  317 (467)
                        +   .....+..+|.++...|++++|...|++++...|+            ..++..+..++.. .+.+.|..+..
T Consensus       282 --~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          282 --P---GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             --T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             --C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence              1   22245667899999999999999999999998864            3667778777744 55777776653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=1.8e-18  Score=167.55  Aligned_cols=259  Identities=12%  Similarity=-0.012  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|.++...|++++|+.+|++++...|.+..++...+..+...   ++...+...+.+.....++           
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~-----------   87 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPK-----------   87 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-----------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcC-----------
Confidence            44688999999999999999999999999999888776554444333   3455565555544322211           


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH--------------HH-HHHhcCChhHHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ--------------AA-VLVRENKAGKAEELLG  176 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~--------------a~-l~~~~~~~~~A~~~l~  176 (467)
                           ...++++.+.++...|++++|...+++++..+|.+.......              +. ++...|++++|+..++
T Consensus        88 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  162 (327)
T 3cv0_A           88 -----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH  162 (327)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence                 234678899999999999999999999999999987766554              44 5778899999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 012265          177 QFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT  255 (467)
Q Consensus       177 ~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~  255 (467)
                      +++...|++... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...    +
T Consensus       163 ~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~  237 (327)
T 3cv0_A          163 AALEMNPNDAQL-HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----P  237 (327)
T ss_dssp             HHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred             HHHhhCCCCHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Confidence            999999998765 48999999999999999999999987654 67778899999999999999999999998752    1


Q ss_pred             CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-------------HHHHHHHHHHhc-cCChhHHHHHHh
Q 012265          256 EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-------------IEALVGLVTTSA-HVDVDKAESYEK  317 (467)
Q Consensus       256 ~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-------------~~ala~Lv~a~~-~~d~~kA~~l~~  317 (467)
                      .   ....+..+|.++...|++++|...|++++...|+             ..++..+..++. ..+.+.|..+..
T Consensus       238 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          238 G---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            1   1235666899999999999999999999999877             355666777764 455788877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.82  E-value=5.7e-18  Score=172.40  Aligned_cols=265  Identities=16%  Similarity=0.136  Sum_probs=209.5

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -..+++.+|.++...|++++|+.+|++++...|.+..++...+..+...   ++..+++..+.+.....|+         
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~---------   92 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM---GKSKAALPDLTKVIQLKMD---------   92 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT---------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCC---------
Confidence            3467889999999999999999999999999999887776555444444   3455666655544332221         


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHH------------HHHHHHhcCChhHHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLL------------QAAVLVRENKAGKAEEL  174 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll------------~a~l~~~~~~~~~A~~~  174 (467)
                             ...++++.+.++...|++++|...+++++..+|++.   .++..            .|.++...|++++|+..
T Consensus        93 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A           93 -------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   235678899999999999999999999999999987   55433            35568899999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012265          175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA  253 (467)
Q Consensus       175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~  253 (467)
                      +++++...|++... ++.+|.+|...|++++|+.+|++++...+ ++.++..++.+|...|++++|+..|++++...   
T Consensus       166 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  241 (450)
T 2y4t_A          166 LDKILEVCVWDAEL-RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---  241 (450)
T ss_dssp             HHHHHHHCTTCHHH-HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCChHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            99999999999875 48999999999999999999999987654 67888899999999999999999999998652   


Q ss_pred             ccCCchHHHHH---------HHHHHHHHHCCChhHHHHHHHHHHHhcCCH-----HHHHHHHHHhc-cCChhHHHHHHhc
Q 012265          254 MTEDNKLSVIM---------QEAASFKLRHGREEDASHLFEELVKTHGSI-----EALVGLVTTSA-HVDVDKAESYEKR  318 (467)
Q Consensus       254 ~~~~~~~~~ll---------~~la~~~l~~g~~~~A~~~le~ll~~~pd~-----~ala~Lv~a~~-~~d~~kA~~l~~~  318 (467)
                       ++.......+         ..+|.++...|++++|+.+|++++...|+.     ..+..++.++. ..+.+.|..+...
T Consensus       242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  320 (450)
T 2y4t_A          242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE  320 (450)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             2222221111         223889999999999999999999998862     34556666664 4567888877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.82  E-value=5.3e-18  Score=179.24  Aligned_cols=267  Identities=14%  Similarity=0.061  Sum_probs=215.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|..++++.+..+.        +-..++..++.++...|++++|..+|+.++...|.+..++...+..+...   ++
T Consensus       320 ~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~  388 (597)
T 2xpi_A          320 RFIDVLAITTKILEIDP--------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NK  388 (597)
T ss_dssp             CHHHHHHHHHHHHHHCT--------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT---TC
T ss_pred             CHHHHHHHHHHHHHcCc--------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh---cc
Confidence            35778888888886431        12245778899999999999999999999999998887776554444333   45


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV  163 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~  163 (467)
                      ..++...+.+.....+                .....+++.+.++...|++++|.+.+++++..+|++...+...+.++.
T Consensus       389 ~~~A~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDP----------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            5666666654432211                122467788999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC------CCC--hhHHHHHHHHHHHcCC
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI------QHM--PATVATLVALKERAGD  235 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~------~~~--p~~~~~l~~ly~~~g~  235 (467)
                      ..|++++|+..++++++..|++... +..++.+|...|++++|+..|+++++.      .+.  ..++..++.+|...|+
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPLL-LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998875 489999999999999999999999765      332  4578899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265          236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~  305 (467)
                      +++|+.+|++++...    +++   ...+..+|.++...|++++|..+|+++++.+|+ ..+...|..+|.
T Consensus       532 ~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          532 YDAAIDALNQGLLLS----TND---ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHHHHS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC----CCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999998752    222   235667899999999999999999999999986 566666665553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=1.3e-18  Score=164.78  Aligned_cols=251  Identities=10%  Similarity=0.025  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      +++.+|.++..+|++++|+..|++++..+|.+..++...+..+...   ++..+++..+.+......+         ...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~---------~~~   72 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL---AKYDLAQKDIETYFSKVNA---------TKA   72 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHT---TCHHHHHHHHHHHHTTSCT---------TTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhccCc---------hhH
Confidence            3578999999999999999999999999999887666554444333   3455666655544321100         011


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                          ...++++.+.++...|++++|+..+++++..+|++..++...|.++...|++++|+..++++++.+|++.... +.
T Consensus        73 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~  147 (272)
T 3u4t_A           73 ----KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF-YE  147 (272)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH-HH
T ss_pred             ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH-HH
Confidence                1235789999999999999999999999999999999999999999999999999999999999999998754 88


Q ss_pred             HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhccC-CchHHHHHHHH
Q 012265          193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTE-DNKLSVIMQEA  267 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~---~~~A~~~l~~al~~~~~~~~~-~~~~~~ll~~l  267 (467)
                      +|......+++++|+..|+++++..+ ++..+..++.++...|+   +++|+..|++++......+.. ...+..++..+
T Consensus       148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  227 (272)
T 3u4t_A          148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI  227 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99455556799999999999998765 56677789999999999   889999999999876432211 12233567778


Q ss_pred             HHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265          268 ASFKLRHGREEDASHLFEELVKTHGS-IEALVGL  300 (467)
Q Consensus       268 a~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L  300 (467)
                      |.++...|++++|...|+++++.+|+ ..+.-++
T Consensus       228 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  261 (272)
T 3u4t_A          228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence            99999999999999999999999986 4444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=1.8e-18  Score=160.12  Aligned_cols=190  Identities=14%  Similarity=0.050  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      .++++.+.+++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~~lg~~~~   84 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG-YMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999875 489999999


Q ss_pred             Hc-----------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265          199 AA-----------NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE  266 (467)
Q Consensus       199 ~~-----------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~  266 (467)
                      ..           |++++|+..|++++++.+ ++.++..++.+|..+|++++|+..|++++...     +   ...++..
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~~  156 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-----D---TPEIRSA  156 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C---CHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----c---chHHHHH
Confidence            99           999999999999998776 67788899999999999999999999999862     1   1235677


Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc-cCChhHHHHHHh
Q 012265          267 AASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA-HVDVDKAESYEK  317 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~-~~d~~kA~~l~~  317 (467)
                      +|.++...|++++|+..|+++++.+|+ ..++..+..++. ..+.+.|.....
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            899999999999999999999999986 567777777764 445677755543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.1e-17  Score=170.57  Aligned_cols=263  Identities=17%  Similarity=0.153  Sum_probs=208.8

Q ss_pred             hHHHHHHHhhhhhc-----CCCC-ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh
Q 012265            4 MYLIFVRIGQETLT-----DDNF-AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA   77 (467)
Q Consensus         4 ~l~~A~~~~~~~l~-----~~~~-~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~   77 (467)
                      ....|...+++.+.     .+.. ...+.......++..+|.++...|++++|...|++++...|. ..++...+.-+..
T Consensus       204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~  282 (514)
T 2gw1_A          204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD  282 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence            36677888877776     3211 222334566788999999999999999999999999999998 5555544444444


Q ss_pred             ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH
Q 012265           78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL  157 (467)
Q Consensus        78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll  157 (467)
                      .++...+...+..+..   ..++                ...++++.+.+++..|++++|...++.++..+|++..++..
T Consensus       283 ~~~~~~A~~~~~~~~~---~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  343 (514)
T 2gw1_A          283 RNDSTEYYNYFDKALK---LDSN----------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ  343 (514)
T ss_dssp             SSCCTTGGGHHHHHHT---TCTT----------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred             CCCHHHHHHHHHHHhh---cCcC----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence            4444444444443322   1111                12467889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch------hHHHHHHHHH
Q 012265          158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP------ATVATLVALK  230 (467)
Q Consensus       158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p------~~~~~l~~ly  230 (467)
                      .+.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|+++++..+ .+      .++..++.+|
T Consensus       344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  422 (514)
T 2gw1_A          344 LACLAYRENKFDDCETLFSEAKRKFPEAPEV-PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL  422 (514)
T ss_dssp             HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHcccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998765 48999999999999999999999986433 22      3788899999


Q ss_pred             HH---cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          231 ER---AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       231 ~~---~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ..   .|++++|+..|++++...    ++   ....+..+|.++...|++++|...|++++..+|+.
T Consensus       423 ~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          423 TRNPTVENFIEATNLLEKASKLD----PR---SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HTSCCTTHHHHHHHHHHHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhC----cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            99   999999999999999752    11   22356668999999999999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=4.2e-17  Score=169.63  Aligned_cols=262  Identities=14%  Similarity=0.147  Sum_probs=209.3

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|..++++.+..+.- ..+....++.++..+|.++...|++++|+..|+.++..+|. ..++...+..+.   ..++
T Consensus       217 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~  291 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA---DKEN  291 (537)
T ss_dssp             HHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC---CSSC
T ss_pred             HHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH---HhcC
Confidence            567888899888875532 33455567788999999999999999999999999999997 555544433332   2345


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV  163 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~  163 (467)
                      ...+...+.+.....++                ...++++.+.+++..|++++|+..+++++..+|++..++...|.++.
T Consensus       292 ~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPE----------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             CHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56666666554332211                23468899999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHc---
Q 012265          164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERA---  233 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~---  233 (467)
                      ..|++++|+..++++++.+|++... +..+|.+|...|++++|+..|+++++..+       ..+.+..++.+|...   
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  434 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEV-PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ  434 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998765 48999999999999999999999975321       334456778889998   


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          234 -------GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       234 -------g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                             |++++|+..|++++...    +   ....++..+|.++...|++++|...|+++++..|+.
T Consensus       435 ~~~~~~~~~~~~A~~~~~~a~~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  495 (537)
T 3fp2_A          435 DPTQLDEEKFNAAIKLLTKACELD----P---RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM  495 (537)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHC----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred             cchhhhHhHHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence                   99999999999999753    2   122456778999999999999999999999999763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.9e-17  Score=153.45  Aligned_cols=232  Identities=11%  Similarity=-0.024  Sum_probs=187.5

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      +.++..+|.++..+|++++|+..|++++... .+..++...+..+...   ++...+...+.+.....++.         
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~---------   71 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK---GEYETAISTLNDAVEQGREM---------   71 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCccc---------
Confidence            4567899999999999999999999999998 7777666554444333   34555666555543322210         


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      .-.......++++.+.++...|++++|...+++++..+|.        +.++...|++++|+..+++++..+|++... +
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~  142 (258)
T 3uq3_A           72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEE-A  142 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-H
T ss_pred             ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH-H
Confidence            0011122467889999999999999999999999998887        345677899999999999999999988765 4


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      +.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...    +   .....+..+|.
T Consensus       143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~---~~~~~~~~l~~  215 (258)
T 3uq3_A          143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----P---NFVRAYIRKAT  215 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---TCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----H---HHHHHHHHHHH
Confidence            8999999999999999999999987654 67788899999999999999999999999753    1   12235666899


Q ss_pred             HHHHCCChhHHHHHHHHHHHhc
Q 012265          270 FKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ++...|++++|...|+++++.+
T Consensus       216 ~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          216 AQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-17  Score=172.08  Aligned_cols=195  Identities=13%  Similarity=0.135  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      +....++++.+.+++..|++++|...++.++..+|+ ..++...+.++...|++++|+..+++++..+|++... ++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~  311 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-YYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH-HHHHH
Confidence            344567778888888999999999999999888888 7777788888889999999999999999998888765 48889


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+.+|++++...    +.+.   .++..+|.++..
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~la~~~~~  384 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF----PEAP---EVPNFFAEILTD  384 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS----TTCS---HHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----ccCH---HHHHHHHHHHHH
Confidence            999999999999999999887654 56677888899999999999999999988753    2222   245567999999


Q ss_pred             CCChhHHHHHHHHHHHhcCCH-H------HHHHHHHHhcc----CChhHHHHHHhc
Q 012265          274 HGREEDASHLFEELVKTHGSI-E------ALVGLVTTSAH----VDVDKAESYEKR  318 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~pd~-~------ala~Lv~a~~~----~d~~kA~~l~~~  318 (467)
                      .|++++|..+|++++...|+. .      ++..+..++..    .+.+.|..+...
T Consensus       385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~  440 (514)
T 2gw1_A          385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK  440 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence            999999999999999887542 2      66777776644    557888766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=3.8e-18  Score=172.03  Aligned_cols=251  Identities=12%  Similarity=0.038  Sum_probs=201.0

Q ss_pred             HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265           26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      +.++...++..++.++..+|++++|+..|++++..+|++..++...+.-+..+++  +..+++..+.++...+|+     
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P~-----  164 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPK-----  164 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTT-----
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCCC-----
Confidence            3445667889999999999999999999999999999999888755554444432  356666666555443332     


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                                 ...+++|++.++...|++++|+..+++++..+|++..++...+.++...|++++|+..++++++.+|++
T Consensus       165 -----------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          165 -----------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             -----------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence                       235789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-cCChHHH-----HHHHhccccCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhccC
Q 012265          186 SKIILLARAQVAAA-ANHPFIA-----AESLAKIPDIQH-MPATVATLVALKERAG--DIDGAAAVLDSAIKWWLNAMTE  256 (467)
Q Consensus       186 ~~~~~l~Laql~~~-~g~~~~A-----~~~L~~~~~~~~-~p~~~~~l~~ly~~~g--~~~~A~~~l~~al~~~~~~~~~  256 (467)
                      ..++ +.++.+|.. .|.+++|     +..|++++.+++ ++.++..++.+|...|  ++++|+..+.++ .    ..  
T Consensus       234 ~~a~-~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~--  305 (382)
T 2h6f_A          234 NSVW-NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PS--  305 (382)
T ss_dssp             HHHH-HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TT--
T ss_pred             HHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cC--
Confidence            8764 899999999 6665888     588999998776 6778889999999988  688998888775 2    11  


Q ss_pred             CchHHHHHHHHHHHHHHCC--------C-hhHHHHHHHHH-HHhcCC-HHHHHHHHHH
Q 012265          257 DNKLSVIMQEAASFKLRHG--------R-EEDASHLFEEL-VKTHGS-IEALVGLVTT  303 (467)
Q Consensus       257 ~~~~~~ll~~la~~~l~~g--------~-~~~A~~~le~l-l~~~pd-~~ala~Lv~a  303 (467)
                       +....++..+|.++...|        + +++|+.+|+++ ++.+|. ...+..+...
T Consensus       306 -p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~  362 (382)
T 2h6f_A          306 -HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  362 (382)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence             222345666899998874        3 58999999999 899986 3445544443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=5.3e-18  Score=164.27  Aligned_cols=274  Identities=15%  Similarity=0.016  Sum_probs=202.6

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|..++++.+..+        ++...++..+|.++...|++++|...|++++...|.+..++...+..+...   ++
T Consensus        36 ~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~  104 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE---HN  104 (327)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             cHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CC
Confidence            3567888888877643        223467888999999999999999999999999999887776554444333   34


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HH-HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR-VL-LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV  161 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~-al-l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l  161 (467)
                      ...+...+.+.....++.......+.. ... . .....+. +. ++...|++++|...+++++..+|++..++...|.+
T Consensus       105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  181 (327)
T 3cv0_A          105 ANAALASLRAWLLSQPQYEQLGSVNLQ-ADV-D-IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL  181 (327)
T ss_dssp             HHHHHHHHHHHHHTSTTTTTC-----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHhH-HHH-H-HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            555555555443332221110000000 000 0 0001111 22 47778899999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +...|++++|+..+++++..+|++... +..+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELRPDDAQL-WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            999999999999999999999998875 48999999999999999999999987654 6778889999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          241 AVLDSAIKWWLNAMTEDN-----KLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~~~-----~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      ..|++++...+.......     .....+..+|.++...|++++|..+|++++...|
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            999999987533110000     0345677789999999999999999998887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=9e-18  Score=166.58  Aligned_cols=267  Identities=10%  Similarity=-0.029  Sum_probs=197.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|..+++..+..+        ++...++..+|.++..+|++++|+..|++++..+|.+..++...+..+...   ++
T Consensus        80 ~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~  148 (365)
T 4eqf_A           80 DLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT---SH  148 (365)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             CHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc---cc
Confidence            3567888888888643        223467899999999999999999999999999999888776555444433   34


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC--CchHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPLLLQAAV  161 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~--~~~~~ll~a~l  161 (467)
                      ...+...+.+.....|+.......+      .....+..+.+.++...|++++|+..+++++..+|+  +..++...|.+
T Consensus       149 ~~~A~~~~~~al~~~p~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          149 QQDACEALKNWIKQNPKYKYLVKNK------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHHHHHHHHHHHHCHHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHhhh------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            5556665555443322211100000      011234456688999999999999999999999999  77788889999


Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +...|++++|+..|+++++.+|++... +..+|.+|...|++++|+..|++++++.+ ++.++..++.+|..+|++++|+
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSL-WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999875 48999999999999999999999998765 5778889999999999999999


Q ss_pred             HHHHHHHHHHHHhccC-----CchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265          241 AVLDSAIKWWLNAMTE-----DNKLSVIMQEAASFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~-----~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll  288 (467)
                      ..|++++...+.....     ......++..++.++...|+.+.|..++++.+
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            9999999887542210     00123467778999999999998887766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.78  E-value=2.6e-17  Score=171.27  Aligned_cols=197  Identities=13%  Similarity=0.054  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      ++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|..
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~~~  356 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Confidence            455666666677777777777777777788887777788888888888888888888888888887654 4788888888


Q ss_pred             cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC----
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH----  274 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~----  274 (467)
                      .|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...+........+. .+...|.++...    
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~  435 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG-PLIGKATILARQSSQD  435 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH-HHHHHHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH-HHHHHHHHHHHHhhcc
Confidence            8888888888888876554 5677788899999999999999999999887655332212222 234468888888    


Q ss_pred             ------CChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          275 ------GREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       275 ------g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                            |++++|...|+++++.+|+ ..++..+..++ ...+.+.|..+..+
T Consensus       436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                  9999999999999999976 67777777777 45667888777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=2.4e-17  Score=163.00  Aligned_cols=274  Identities=10%  Similarity=-0.063  Sum_probs=202.8

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|...+++.+..+.        +...++..+|.++..+|++++|+..|++++...|.+..++...+.-+...   ++
T Consensus        79 ~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~  147 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDP--------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE---SL  147 (368)
T ss_dssp             CHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred             CHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CC
Confidence            35678888888886432        23457889999999999999999999999999999888776554444333   34


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC--CchHHHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPLLLQAAV  161 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~--~~~~~ll~a~l  161 (467)
                      ...+...+.+.....++.......+..-....+......+.+.++ ..|++++|...+++++..+|+  +..++...|.+
T Consensus       148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~  226 (368)
T 1fch_A          148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  226 (368)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence            555555555543332221110000000000000111122345454 889999999999999999999  67778888999


Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ .+.++..++.+|...|++++|+
T Consensus       227 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  305 (368)
T 1fch_A          227 FNLSGEYDKAVDCFTAALSVRPNDYLL-WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  305 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999875 48999999999999999999999987665 6778889999999999999999


Q ss_pred             HHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          241 AVLDSAIKWWLNAMTE----DNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~----~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      ..|++++...+.....    .+....++..+|.++...|++++|..++++.+..
T Consensus       306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            9999999876543100    0112346777899999999999999999877754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.76  E-value=2.8e-17  Score=146.88  Aligned_cols=170  Identities=14%  Similarity=0.083  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ...+++|.+.++...|++++|+..++++++.+|++..++...|.++...|++++|+..+.+++...|++.... ..++.+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY-YILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH-HHHHHH
Confidence            3468999999999999999999999999999999999999999999999999999999999999999998764 889999


Q ss_pred             HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      +...++++.|...+.+++...+ ++.++..++.+|..+|++++|+..|++++...       +....++..+|.++...|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHHHCC
Confidence            9999999999999999987665 67788899999999999999999999999762       222345777899999999


Q ss_pred             ChhHHHHHHHHHHHhcCCH
Q 012265          276 REEDASHLFEELVKTHGSI  294 (467)
Q Consensus       276 ~~~~A~~~le~ll~~~pd~  294 (467)
                      ++++|+..|+++++.+|+.
T Consensus       156 ~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          156 LRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             CHHHHHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHhCCccC
Confidence            9999999999999988753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.75  E-value=7.8e-17  Score=149.48  Aligned_cols=202  Identities=13%  Similarity=0.106  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|.++...|++++|+..|++++...|.+..                                             
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~---------------------------------------------   58 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI---------------------------------------------   58 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHH---------------------------------------------
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHH---------------------------------------------
Confidence            55788999999999999999999999987664321                                             


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                              ++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++
T Consensus        59 --------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~  129 (243)
T 2q7f_A           59 --------PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL-FY  129 (243)
T ss_dssp             --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-HH
T ss_pred             --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH-HH
Confidence                    234557777888999999999999999999998888899999999999999999999999999998775 48


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~  270 (467)
                      .+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...    +.+   ...+..+|.+
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~  202 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD----PGH---ADAFYNAGVT  202 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC----TTC---HHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc---HHHHHHHHHH
Confidence            899999999999999999999987654 67778889999999999999999999998752    111   2356668999


Q ss_pred             HHHCCChhHHHHHHHHHHHhcCCH
Q 012265          271 KLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       271 ~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      +...|++++|...|+++++.+|+.
T Consensus       203 ~~~~~~~~~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          203 YAYKENREKALEMLDKAIDIQPDH  226 (243)
T ss_dssp             HHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred             HHHccCHHHHHHHHHHHHccCcch
Confidence            999999999999999999999863

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=3.3e-16  Score=151.92  Aligned_cols=264  Identities=12%  Similarity=0.088  Sum_probs=186.2

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      ...|...++....   .+++.    -....+.++.+|..+|++++|+..++..   +|.+..++... ..++  ....+.
T Consensus        15 y~~ai~~~~~~~~---~~p~~----~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~l-a~~~--~~~~~~   81 (291)
T 3mkr_A           15 YQQCINEAQRVKP---SSPER----DVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMF-AEYL--ASHSRR   81 (291)
T ss_dssp             HHHHHHHHHHSCC---CSHHH----HHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHH-HHHH--HCSTTH
T ss_pred             HHHHHHHHHhccc---CCchh----hHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHH-HHHH--cCCCcH
Confidence            4455555544432   33443    1234566788999999999999877542   33232222222 1222  233456


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                      ..++..++++...             .+. +....+++..+.+++..|++++|++.+++     |++..++...+.++..
T Consensus        82 ~~A~~~l~~ll~~-------------~~~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~  142 (291)
T 3mkr_A           82 DAIVAELDREMSR-------------SVD-VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK  142 (291)
T ss_dssp             HHHHHHHHHHHHS-------------CCC-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-------------ccC-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Confidence            6666666554321             000 11235678899999999999999999988     8888899999999999


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLAR--AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA  241 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~L--aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~  241 (467)
                      .|++++|++.|++++..+|++... .+..  ..++...|++++|+.+|+++++..+ ++.++..++.+|..+|++++|+.
T Consensus       143 ~g~~~~A~~~l~~~~~~~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          143 LDRLDLARKELKKMQDQDEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG  221 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999987532 2333  3555566899999999999987654 77788889999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH-HHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265          242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED-ASHLFEELVKTHGSIEALVGLVTTSAHVD  308 (467)
Q Consensus       242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~-A~~~le~ll~~~pd~~ala~Lv~a~~~~d  308 (467)
                      .|++++...    |+   ...++..+|.++...|++.+ +..+|+++++.+|+...+..+......||
T Consensus       222 ~l~~al~~~----p~---~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd  282 (291)
T 3mkr_A          222 VLQEALDKD----SG---HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFD  282 (291)
T ss_dssp             HHHHHHHHC----TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC----CC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999752    22   23357778999999999976 56899999999998655555544434443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.74  E-value=1.6e-16  Score=141.97  Aligned_cols=168  Identities=13%  Similarity=0.044  Sum_probs=143.8

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      |-..|++.+|.+|..+|++++|+..|+++++.+|++..+                                         
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------------------------------------   41 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET-----------------------------------------   41 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------------------------------------
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------------
Confidence            556889999999999999999999999999998865332                                         


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                                  +++.+.++...|++++|...+..+...+|++..+....+.++...++++.|+..+.+++..+|++...
T Consensus        42 ------------~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  109 (184)
T 3vtx_A           42 ------------LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADA  109 (184)
T ss_dssp             ------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence                        23456677778888899999999888899988888888888889999999999999999999998775


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      . ..+|.+|...|++++|+..|++++++++ ++.++..++.+|..+|++++|+..|+++++..
T Consensus       110 ~-~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          110 Y-YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             H-HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            4 8889999999999999999999987765 67788889999999999999999999998753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=2.9e-16  Score=146.93  Aligned_cols=203  Identities=13%  Similarity=0.035  Sum_probs=160.8

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..+++.+|.++...|++++|+..|++++...|.+..                                            
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------------------------------   72 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD--------------------------------------------   72 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH--------------------------------------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH--------------------------------------------
Confidence            677899999999999999999999999887664322                                            


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH--hCCCcHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE--KLPDKSKI  188 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~--~~P~~~~~  188 (467)
                               ++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++.  ..|.+...
T Consensus        73 ---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  143 (252)
T 2ho1_A           73 ---------AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV  143 (252)
T ss_dssp             ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH
Confidence                     2334566777788888888888888888888888888888888888888888888888888  67776654


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA  267 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~l  267 (467)
                       ++.+|.+|...|++++|+..|++++...+ .+.++..++.+|...|++++|+.+|++++...    +.   ....+..+
T Consensus       144 -~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~~  215 (252)
T 2ho1_A          144 -FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG----GQ---NARSLLLG  215 (252)
T ss_dssp             -HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----CC---CHHHHHHH
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cC---cHHHHHHH
Confidence             47888888888888888888888876554 56677788888888888888888888877531    11   12235557


Q ss_pred             HHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          268 ASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       268 a~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      +.++...|++++|..+|+++++.+|+.
T Consensus       216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          216 IRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            888888899999999999998888764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=1.7e-15  Score=138.32  Aligned_cols=205  Identities=16%  Similarity=0.063  Sum_probs=169.9

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      ...++..+|.++...|++++|+..|++++...|.+..                                           
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------------------------   43 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL-------------------------------------------   43 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH-------------------------------------------
Confidence            4567889999999999999999999999987775422                                           


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc-CChhHHHHHHHHHHH--hCCCcH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE-NKAGKAEELLGQFAE--KLPDKS  186 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~-~~~~~A~~~l~~~l~--~~P~~~  186 (467)
                                ++++.+.++...|++++|...+++++..+|++..++...+.++... |++++|+..+++++.  .+|++.
T Consensus        44 ----------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (225)
T 2vq2_A           44 ----------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY  113 (225)
T ss_dssp             ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH
T ss_pred             ----------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchH
Confidence                      2334577778889999999999999999999988888899999999 999999999999999  666665


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      .. ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+.+|++++...+   ..+.   ..+.
T Consensus       114 ~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~---~~~~  186 (225)
T 2vq2_A          114 IA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE---VLQA---DDLL  186 (225)
T ss_dssp             HH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SCCH---HHHH
T ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCCH---HHHH
Confidence            54 48899999999999999999999987654 577788899999999999999999999987531   0122   2344


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      .++.++...|++++|..+++.++..+|+.
T Consensus       187 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~  215 (225)
T 2vq2_A          187 LGWKIAKALGNAQAAYEYEAQLQANFPYS  215 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence            46778889999999999999999888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.71  E-value=5.2e-16  Score=150.49  Aligned_cols=244  Identities=15%  Similarity=0.146  Sum_probs=182.2

Q ss_pred             HHHHhCChHHHHHHHHHHhccCCCch-HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHH
Q 012265           40 VQQLLGNTQEAFGAYTDIIKRNLADE-SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE  118 (467)
Q Consensus        40 v~~~~G~~~eA~~~y~~~l~~~p~d~-~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~  118 (467)
                      -++-.|++.+|+..++.+....|.+. ........-++..+   ++..++..+...                  .++ ..
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g---~~~~al~~~~~~------------------~~~-~~   65 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR---KYGVVLDEIKPS------------------SAP-EL   65 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTT---CHHHHHHHSCTT------------------SCH-HH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCC---CHHHHHHHhccc------------------CCh-hH
Confidence            36789999999999999888877653 34333334444444   345555444321                  111 12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ......+.++...++.++|++.++.++..  +|++..+++..|.++...|++++|+..|++     |++... ++.++++
T Consensus        66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~-~~~l~~~  139 (291)
T 3mkr_A           66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLEC-MAMTVQI  139 (291)
T ss_dssp             HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHH-HHHHHHH
Confidence            34455677788888999999999998765  699999999999999999999999999987     788765 5899999


Q ss_pred             HHHcCChHHHHHHHhccccCCCChh-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          197 AAAANHPFIAAESLAKIPDIQHMPA-TV--ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~~p~-~~--~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      |..+|++++|+..|++++...+... +.  ..++.++...|++++|+.+|++++..+    |++   ..++..+|.+++.
T Consensus       140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p~~---~~~~~~la~~~~~  212 (291)
T 3mkr_A          140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPT---LLLLNGQAACHMA  212 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----CCC---HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHH
Confidence            9999999999999999987654322 11  223355556699999999999999753    222   3457778999999


Q ss_pred             CCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccC-Ch-hHHHHHHhc
Q 012265          274 HGREEDASHLFEELVKTHGS-IEALVGLVTTSAHV-DV-DKAESYEKR  318 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~-d~-~kA~~l~~~  318 (467)
                      .|++++|...|++++..+|+ .+++.+++.++... +. +.+..+.++
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~  260 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ  260 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999985 68888888776433 33 345566543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=1.7e-15  Score=143.14  Aligned_cols=228  Identities=14%  Similarity=0.046  Sum_probs=159.7

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV   84 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~   84 (467)
                      +..|...+++.+......+    .+...+++.+|.++..+|++++|+..|++++..+|.+..                  
T Consensus        21 ~~~A~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------   78 (275)
T 1xnf_A           21 QEVILARMEQILASRALTD----DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------   78 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------
T ss_pred             HHHHHHHHHHHHhcccccC----chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------------------
Confidence            4566666666665422211    223456667777777777777777777777766554322                  


Q ss_pred             hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265           85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR  164 (467)
Q Consensus        85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~  164 (467)
                                                         ++++.+.+++..|++++|...+++++..+|++..++...|.++..
T Consensus        79 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           79 -----------------------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             -----------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence                                               344567777888888888888888888888888888888888888


Q ss_pred             cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265          165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD  244 (467)
Q Consensus       165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~  244 (467)
                      .|++++|+..+++++...|++...  ..+..++...|++++|+..|.+++...+.......++.++...++.++|+..+.
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  201 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQDDPNDPFR--SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK  201 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888888988888888888888643  333445567788888888888776543322223346777778888888888888


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          245 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       245 ~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      +++...+...   +.....+..+|.++...|++++|...|++++..+|+.
T Consensus       202 ~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          202 ADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            7765432211   1223456667888888999999999999998888753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.71  E-value=4.8e-16  Score=156.31  Aligned_cols=276  Identities=12%  Similarity=-0.028  Sum_probs=201.8

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL  104 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  104 (467)
                      .....++++|.++...|++++|+..|++++...|.+.....    ..+..+...   ++...+...+.+....       
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~-------  115 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL---GDYNKAMQYHKHDLTL-------  115 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH-------
Confidence            34556678999999999999999999999999998875332    222222222   3455555555443221       


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc------CCCCchHHHHHHHHHHhcCC-----------
Q 012265          105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM------FPDSVMPLLLQAAVLVRENK-----------  167 (467)
Q Consensus       105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~------~P~~~~~~ll~a~l~~~~~~-----------  167 (467)
                      ...+   -..+....++++.+.++...|++++|...+++++..      .|....++...+.++...|+           
T Consensus       116 ~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  192 (411)
T 4a1s_A          116 AKSM---NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG  192 (411)
T ss_dssp             HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHc---cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence            0011   112345567889999999999999999999988876      33444466788889999999           


Q ss_pred             ------hhHHHHHHHHHHHhCC---C--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHH
Q 012265          168 ------AGKAEELLGQFAEKLP---D--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVAL  229 (467)
Q Consensus       168 ------~~~A~~~l~~~l~~~P---~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~l  229 (467)
                            +++|+..+++++...+   +  ....++..+|.+|...|++++|+..|++++++..   .    ..++..++.+
T Consensus       193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (411)
T 4a1s_A          193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS  272 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                  9999999999877532   1  1112458899999999999999999999986432   1    1256788999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHHHH
Q 012265          230 KERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGLVT  302 (467)
Q Consensus       230 y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~Lv~  302 (467)
                      |..+|++++|+.+|++++...+... +.......+..+|.++...|++++|..+|++++...+   +    ..++..+..
T Consensus       273 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  351 (411)
T 4a1s_A          273 HIFLGQFEDAAEHYKRTLALAVELG-EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN  351 (411)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            9999999999999999998876532 2223345677789999999999999999999998753   2    234555666


Q ss_pred             Hh-ccCChhHHHHHHhc
Q 012265          303 TS-AHVDVDKAESYEKR  318 (467)
Q Consensus       303 a~-~~~d~~kA~~l~~~  318 (467)
                      ++ ...+.+.|..+..+
T Consensus       352 ~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          352 AHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHH
Confidence            65 45678888777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.70  E-value=8.7e-16  Score=153.28  Aligned_cols=275  Identities=10%  Similarity=-0.062  Sum_probs=200.4

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      .+..++.+|.++...|++++|+..|++++...|.+.....    ..+..+..   .++...+...+.+.....       
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~-------   77 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLA-------   77 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHH-------
Confidence            3456788999999999999999999999999998865432    22222222   234555555554432211       


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCC------------
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENK------------  167 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~------------  167 (467)
                      ...   -..+....++++.+.++...|++++|...+++++...|...      .++...+.++...|+            
T Consensus        78 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  154 (406)
T 3sf4_A           78 RTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE  154 (406)
T ss_dssp             HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred             Hhc---cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence            111   11234456788999999999999999999999887766432      256677888899999            


Q ss_pred             --------hhHHHHHHHHHHHhC---CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHH
Q 012265          168 --------AGKAEELLGQFAEKL---PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLV  227 (467)
Q Consensus       168 --------~~~A~~~l~~~l~~~---P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~  227 (467)
                              +++|+..+.+++...   ++.  ...++..+|.+|...|++++|+..|++++++..   .    ..++..++
T Consensus       155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  234 (406)
T 3sf4_A          155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG  234 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence                    999999999887752   111  112457899999999999999999999985421   1    12567889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHH
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGL  300 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~L  300 (467)
                      .+|...|++++|+..|++++...+... +.......+..+|.++...|++++|...|++++...+   +    ..++..+
T Consensus       235 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  313 (406)
T 3sf4_A          235 NAYIFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL  313 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            999999999999999999998876532 2233345677789999999999999999999998753   2    2345555


Q ss_pred             HHHh-ccCChhHHHHHHhc
Q 012265          301 VTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       301 v~a~-~~~d~~kA~~l~~~  318 (467)
                      ..++ ...+.+.|..+..+
T Consensus       314 a~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            5555 45678888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.70  E-value=3.4e-15  Score=139.62  Aligned_cols=198  Identities=14%  Similarity=0.101  Sum_probs=168.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                      .+.....++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~  110 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV-LNN  110 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH-HHH
Confidence            3334456788999999999999999999999999999999999999999999999999999999999999998765 489


Q ss_pred             HHHHHHHcCChHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          193 RAQVAAAANHPFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      ++.+|...|++++|+..|++++.  ..+ .+.++..++.+|...|++++|+.+|++++...    +.+   ..++..+|.
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~la~  183 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN----RNQ---PSVALEMAD  183 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC---HHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----ccc---HHHHHHHHH
Confidence            99999999999999999999987  433 45667889999999999999999999998752    211   234666899


Q ss_pred             HHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          270 FKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++...|++++|..+|++++...|+ ..++..+..++ ...+.+.|..+.+.
T Consensus       184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999998875 55666666655 46678888777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.69  E-value=4.8e-16  Score=156.33  Aligned_cols=272  Identities=12%  Similarity=-0.053  Sum_probs=196.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccC------CCchHHHHHHHhhhhh
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN------LADESSFAVAVNNLVA   77 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~------p~d~~~~~va~nnl~~   77 (467)
                      .+..|...+++.+..+.   ++ ...++.++..+|.+|..+|++++|+..|++++...      +....++...+..+..
T Consensus        63 ~~~~A~~~~~~al~~~~---~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  138 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGT---ED-LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV  138 (411)
T ss_dssp             CHHHHHHHHHHHHHHCC---SC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcc---cC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            35678888888887532   22 12245678999999999999999999999998872      2222333323222222


Q ss_pred             ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 012265           78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK-----------------MDQAREL  140 (467)
Q Consensus        78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~-----------------~~~A~~~  140 (467)
                      .   ++...++..+.+.....       ...   -..+....++++.+.++...|+                 +++|...
T Consensus       139 ~---g~~~~A~~~~~~al~~~-------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          139 M---GRFDEAAICCERHLTLA-------RQL---GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             T---TCHHHHHHHHHHHHHHH-------HHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             C---CCHHHHHHHHHHHHHHH-------HHh---hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            2   34555555555432221       011   0123445678899999999999                 9999999


Q ss_pred             HHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHcCChHHHHHH
Q 012265          141 VAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----IILLARAQVAAAANHPFIAAES  209 (467)
Q Consensus       141 ~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~~l~Laql~~~~g~~~~A~~~  209 (467)
                      +++++...      |....++...|.++...|++++|+..+++++...|....     .++..+|.+|...|++++|+..
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            98876543      222335667888999999999999999999987654211     1457899999999999999999


Q ss_pred             HhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265          210 LAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH  282 (467)
Q Consensus       210 L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~  282 (467)
                      |++++++..       ...++..++.+|..+|++++|+.+|++++...+... .......++..+|.++...|++++|..
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999975422       134567899999999999999999999998876532 223334466778999999999999999


Q ss_pred             HHHHHHHhcCC
Q 012265          283 LFEELVKTHGS  293 (467)
Q Consensus       283 ~le~ll~~~pd  293 (467)
                      +|++++...+.
T Consensus       365 ~~~~al~~~~~  375 (411)
T 4a1s_A          365 YAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHCCH
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.69  E-value=1.9e-15  Score=145.85  Aligned_cols=272  Identities=11%  Similarity=-0.057  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      .++..|.++...|++++|+..|++++...|.+.....    ..+..+..   .++...+...+.+.....       ...
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~-------~~~   76 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLA-------RTI   76 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHh-------hcc
Confidence            4577899999999999999999999999998865432    22222222   235555655554432211       011


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch------HHHHHHHHHHhcCC---------------
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLVRENK---------------  167 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~------~~ll~a~l~~~~~~---------------  167 (467)
                         -..+....++++.+.++...|++++|...+++++...|....      ++...+.++...|+               
T Consensus        77 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3ro2_A           77 ---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE  153 (338)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred             ---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence               012234557889999999999999999999998776554322      56677888889999               


Q ss_pred             -----hhHHHHHHHHHHHhC---CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHHH
Q 012265          168 -----AGKAEELLGQFAEKL---PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVALK  230 (467)
Q Consensus       168 -----~~~A~~~l~~~l~~~---P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly  230 (467)
                           +++|+..+++++...   ++.  ...++..++.+|...|++++|+..|++++++..   .    ..++..++.+|
T Consensus       154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                 999999999887652   111  112457889999999999999999999985421   1    12567889999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHHHHH
Q 012265          231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGLVTT  303 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~Lv~a  303 (467)
                      ...|++++|+..+++++...+... +.......+..+|.++...|++++|...|++++...+   +    ..++..+..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  312 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA  312 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            999999999999999998875532 2223345667789999999999999999999998753   2    2344555555


Q ss_pred             h-ccCChhHHHHHHhc
Q 012265          304 S-AHVDVDKAESYEKR  318 (467)
Q Consensus       304 ~-~~~d~~kA~~l~~~  318 (467)
                      + ...+.+.|..+...
T Consensus       313 ~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          313 YTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHH
Confidence            5 45678888777643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.68  E-value=1.6e-15  Score=152.87  Aligned_cols=196  Identities=12%  Similarity=0.016  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-AGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~-~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      ....++++.+.++...|++++|+..+++++..+|++..++...+.++...|+ +++|+..|++++..+|++... ++.++
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a-~~~~g  173 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-WHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-HHHHH
Confidence            4556788999999999999999999999999999999999999999999997 999999999999999999876 48999


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .+|...|++++|+..|++++++++ ++.++..++.+|..+|++++|+..|++++...       +....+|..+|.++..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence            999999999999999999998876 77889999999999999999999999999862       2233567778999999


Q ss_pred             -CCChhHH-----HHHHHHHHHhcCC-HHHHHHHHHHhccCC---hhHHHHHHhcC
Q 012265          274 -HGREEDA-----SHLFEELVKTHGS-IEALVGLVTTSAHVD---VDKAESYEKRL  319 (467)
Q Consensus       274 -~g~~~~A-----~~~le~ll~~~pd-~~ala~Lv~a~~~~d---~~kA~~l~~~L  319 (467)
                       .|.+++|     +..|++++..+|+ ..++..+...+....   .+.|..++..+
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence             5665888     5999999999986 567777777665543   57777776665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.68  E-value=5.9e-16  Score=168.02  Aligned_cols=170  Identities=14%  Similarity=0.085  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ....+++|.+.++...|++++|+..++++++.+|++..++..+|.+|...|++++|+..|+++++.+|++... ++.||.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a-~~nLg~   85 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA-YSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999876 499999


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH  274 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~  274 (467)
                      +|..+|++++|+..|++++++++ ++..+..++.+|..+|++++|+..|+++++..       +....++..+|.++...
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHhc
Confidence            99999999999999999998876 67888999999999999999999999999862       22334677799999999


Q ss_pred             CChhHHHHHHHHHHHhcCC
Q 012265          275 GREEDASHLFEELVKTHGS  293 (467)
Q Consensus       275 g~~~~A~~~le~ll~~~pd  293 (467)
                      |++++|.+.|+++++..|+
T Consensus       159 g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          159 CDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             TCCTTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhChh
Confidence            9999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.67  E-value=8.3e-15  Score=133.67  Aligned_cols=193  Identities=17%  Similarity=0.097  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..++++.+.+++..|++++|...++.++..+|++..++...+.++...|++++|+..+++++...|++... ++.+|.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI-NNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH-HHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999998775 48999999


Q ss_pred             HHc-CChHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          198 AAA-NHPFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       198 ~~~-g~~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      ... |++++|+..|+++++  ..+ .+.++..++.+|...|++++|+..|++++...    +.+   ...+..+|.++..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~  159 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----PQF---PPAFKELARTKML  159 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---chHHHHHHHHHHH
Confidence            999 999999999999987  222 34667889999999999999999999998753    111   2356668999999


Q ss_pred             CCChhHHHHHHHHHHHhcC-C-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          274 HGREEDASHLFEELVKTHG-S-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~p-d-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      .|++++|..+|++++...| + ..++..+...+ ...+.+.+..+.+.
T Consensus       160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            9999999999999999988 5 44454444444 45567777777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=1.9e-15  Score=150.70  Aligned_cols=269  Identities=10%  Similarity=-0.068  Sum_probs=193.0

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--CchH----HHHHHHhhhhhc
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADES----SFAVAVNNLVAL   78 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~~----~~~va~nnl~~l   78 (467)
                      ...|...+++.+....   ++ ...+..++..+|.++..+|++++|...|++++....  .+..    ++...+..+.. 
T Consensus        25 ~~~A~~~~~~al~~~~---~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-   99 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGT---ED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-   99 (406)
T ss_dssp             HHHHHHHHHHHHHHCC---SC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhcCc---cc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence            5678888888887532   22 123457789999999999999999999999877631  2222    22222222222 


Q ss_pred             cCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHH
Q 012265           79 KGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK--------------------MDQAR  138 (467)
Q Consensus        79 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~--------------------~~~A~  138 (467)
                        .++...++..+.+.....+.       .   -.......++++.+.++...|+                    +++|.
T Consensus       100 --~g~~~~A~~~~~~al~~~~~-------~---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A          100 --LGNFDEAIVCCQRHLDISRE-------L---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHH-------H---TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHHHh-------c---ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence              23555666555544322111       1   0112334578899999999999                    99999


Q ss_pred             HHHHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHcCChHHHH
Q 012265          139 ELVAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----IILLARAQVAAAANHPFIAA  207 (467)
Q Consensus       139 ~~~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~~l~Laql~~~~g~~~~A~  207 (467)
                      ..+++++...      |....++...|.++...|++++|+..+++++...|....     .++..+|.+|...|++++|+
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            9998776542      222335667788899999999999999999876543211     24588999999999999999


Q ss_pred             HHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHH
Q 012265          208 ESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA  280 (467)
Q Consensus       208 ~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A  280 (467)
                      ..|++++++..       ...++..++.+|...|++++|+..|++++...+... +......++..+|.++...|++++|
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999975321       134567889999999999999999999998875532 2233345677789999999999999


Q ss_pred             HHHHHHHHHhc
Q 012265          281 SHLFEELVKTH  291 (467)
Q Consensus       281 ~~~le~ll~~~  291 (467)
                      ..+|+++++..
T Consensus       327 ~~~~~~al~~~  337 (406)
T 3sf4_A          327 MHFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.66  E-value=1.6e-15  Score=146.41  Aligned_cols=271  Identities=11%  Similarity=-0.049  Sum_probs=191.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--Cch----HHHHHHHhhhhh
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADE----SSFAVAVNNLVA   77 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~----~~~~va~nnl~~   77 (467)
                      ....|...+++.+..+.   ++. .....++..+|.++..+|++++|+..|++++....  .+.    .++...+..+..
T Consensus        20 ~~~~A~~~~~~al~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   95 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGT---EDL-KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV   95 (338)
T ss_dssp             CHHHHHHHHHHHHHHCC---SCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCc---ccH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            35778888888887532   221 12456788999999999999999999999987622  122    222222222222


Q ss_pred             ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHH
Q 012265           78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK--------------------MDQA  137 (467)
Q Consensus        78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~--------------------~~~A  137 (467)
                      .   ++...+...+.+.....+.       .   -.......++++.+.++...|+                    +++|
T Consensus        96 ~---g~~~~A~~~~~~al~~~~~-------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           96 L---GNFDEAIVCCQRHLDISRE-------L---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             T---TCHHHHHHHHHHHHHHHHH-------T---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             c---cCHHHHHHHHHHHHHHHHH-------h---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            2   3455555555543222110       0   1122334578899999999999                    9999


Q ss_pred             HHHHHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHcCChHHH
Q 012265          138 RELVAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS-----KIILLARAQVAAAANHPFIA  206 (467)
Q Consensus       138 ~~~~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~-----~~~~l~Laql~~~~g~~~~A  206 (467)
                      ...+++++...      |....++...+.++...|++++|+..+++++...+...     ..++..+|.+|...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99988776542      22233566778889999999999999999987654321     12458899999999999999


Q ss_pred             HHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265          207 AESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED  279 (467)
Q Consensus       207 ~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~  279 (467)
                      +..|++++++..       ...++..++.+|..+|++++|+..+++++...+... +......++..+|.++...|++++
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~  321 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQ  321 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHH
Confidence            999999975321       134567889999999999999999999998875532 223334456678999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 012265          280 ASHLFEELVKTHG  292 (467)
Q Consensus       280 A~~~le~ll~~~p  292 (467)
                      |..+|++++...+
T Consensus       322 A~~~~~~a~~~~~  334 (338)
T 3ro2_A          322 AMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=2.9e-15  Score=138.75  Aligned_cols=192  Identities=12%  Similarity=0.017  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+..++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~  102 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA-YYGAGNVYV  102 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH-HHHHHHHHH
Confidence            4577889999999999999999999999999999999999999999999999999999999999998765 489999999


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE  277 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~  277 (467)
                      ..|++++|+..|+++++..+ .+.++..++.+|...|++++|+.++++++...    +.+   ..++..+|.++...|++
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN----END---TEARFQFGMCLANEGML  175 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHTCC
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----Ccc---HHHHHHHHHHHHHcCCH
Confidence            99999999999999987654 67788889999999999999999999998753    111   23466689999999999


Q ss_pred             hHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          278 EDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       278 ~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++|...|++++..+|+ ..++..+..++ ...+.+.|..+.++
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999875 56677777776 45567888777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.66  E-value=4.2e-15  Score=137.51  Aligned_cols=168  Identities=11%  Similarity=-0.001  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCC-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFP-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..+++.+.+++..|++++|+..+++++..+| .+..+++..|.++...|++++|+..+++++..+|++... ++.+|.+|
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~   86 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA-YIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH-HHHHHHHH
Confidence            4678999999999999999999999999998 787888889999999999999999999999999998775 48999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch--HHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MP-------ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK--LSVIMQEA  267 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~--~~~ll~~l  267 (467)
                      ..+|++++|+..|++++.+.+ ++       .++..++.++..+|++++|+..|++++..       ++.  ....+..+
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~l  159 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TSKKWKTDALYSL  159 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CCCcccHHHHHHH
Confidence            999999999999999998665 45       45778899999999999999999999864       233  44567778


Q ss_pred             HHHHHHCCCh---------------------------hHHHHHHHHHHHhcCCH
Q 012265          268 ASFKLRHGRE---------------------------EDASHLFEELVKTHGSI  294 (467)
Q Consensus       268 a~~~l~~g~~---------------------------~~A~~~le~ll~~~pd~  294 (467)
                      |.++...|+.                           ++|+..|+++++.+|+.
T Consensus       160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999888888                           89999999999999863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=7.4e-15  Score=150.53  Aligned_cols=244  Identities=14%  Similarity=0.078  Sum_probs=171.3

Q ss_pred             hhhHHHHHHHHHHH--hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265           30 LAPIAVQLAYVQQL--LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV  107 (467)
Q Consensus        30 l~~i~~qlA~v~~~--~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  107 (467)
                      ...+...+|.++..  ++++++|+..|++++..+|+++.+....+.-+..+....+...++..+.+.....|+       
T Consensus       135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-------  207 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-------  207 (472)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-------
T ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-------
Confidence            33455666665554  457999999999999999999887653333222232223333333333332222111       


Q ss_pred             hhcCCCHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          108 LDLRLSPKQREAIYANRVLL----LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       108 l~~kL~~~q~~~l~~n~all----~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                               ...++.+.+..    +...+++++|.+.+++++..+|++..++...|.++...|++++|+..++++++.+|
T Consensus       208 ---------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  278 (472)
T 4g1t_A          208 ---------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP  278 (472)
T ss_dssp             ---------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             ---------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence                     11234444443    34457789999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHc-------------------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265          184 DKSKIILLARAQVAAAA-------------------NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL  243 (467)
Q Consensus       184 ~~~~~~~l~Laql~~~~-------------------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l  243 (467)
                      ++... +..+|.+|..+                   +.+++|+..|++++++.+ .+..+..++.+|...|++++|+..|
T Consensus       279 ~~~~~-~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  357 (472)
T 4g1t_A          279 NNAYL-HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF  357 (472)
T ss_dssp             TCHHH-HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence            99875 47888887543                   346788888988887654 4556778999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHH-HHCCChhHHHHHHHHHHHhcCCH
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFK-LRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~-l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ++++...    +++.....++..+|.++ ...|++++|+..|+++++.+|+.
T Consensus       358 ~kaL~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          358 QKEFSKE----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             HHHHHSC----CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHhcC----CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            9998642    12222223444456554 56899999999999999998763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.65  E-value=7.2e-15  Score=139.12  Aligned_cols=172  Identities=15%  Similarity=0.033  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLAR  193 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~L  193 (467)
                      ...++.+..++..|++++|+..|++++..+|++   ..+++..|.++...|++++|+..|++++..+|++.  ..+++.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            467899999999999999999999999999999   77888999999999999999999999999998642  2345899


Q ss_pred             HHHHHH--------cCChHHHHHHHhccccCCC-ChhHH-----------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          194 AQVAAA--------ANHPFIAAESLAKIPDIQH-MPATV-----------------ATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       194 aql~~~--------~g~~~~A~~~L~~~~~~~~-~p~~~-----------------~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      |.+|..        +|++++|+..|+++++..+ ++...                 ..++.+|...|++++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        9999999999999987544 33333                 678999999999999999999999


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHC----------CChhHHHHHHHHHHHhcCCH
Q 012265          248 KWWLNAMTEDNKLSVIMQEAASFKLRH----------GREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       248 ~~~~~~~~~~~~~~~ll~~la~~~l~~----------g~~~~A~~~le~ll~~~pd~  294 (467)
                      ..++    +++....++..+|.++...          |++++|+..|+++++.+|+.
T Consensus       176 ~~~p----~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          176 DAYP----DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHCT----TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHCC----CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            8643    2333445667789999876          89999999999999999873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.7e-14  Score=134.56  Aligned_cols=192  Identities=13%  Similarity=-0.035  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-------HHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-------SKIIL  190 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-------~~~~~  190 (467)
                      ...+++.+.+++..|++++|...+++++..+ ++..++...|.++...|++++|+..+.+++...|++       .. ++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK-SF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH-HH
Confidence            3567889999999999999999999999888 888888899999999999999999999999988765       34 45


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcccc--------------------------CCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPD--------------------------IQH-MPATVATLVALKERAGDIDGAAAVL  243 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~--------------------------~~~-~p~~~~~l~~ly~~~g~~~~A~~~l  243 (467)
                      +.+|.+|...|++++|+..|++++.                          ..+ .+.++..++.+|...|++++|+..|
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8999999999999999999999986                          332 4456778999999999999999999


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      ++++...    +.   ...++..+|.++...|++++|...|++++..+|+ ..++..+..++ ...+.+.|..+...
T Consensus       163 ~~a~~~~----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          163 TEMIKRA----PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcC----cc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999753    11   1245667899999999999999999999999976 67777777776 45567888776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=4e-14  Score=145.05  Aligned_cols=266  Identities=15%  Similarity=0.018  Sum_probs=180.9

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--------CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhh
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--------ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKD   98 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--------~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~   98 (467)
                      +...+..+..+|.+|..+|++++|+..|++++...+        ....++...+..++.++ ..++..|...+.+.....
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhC
Confidence            344667788999999999999999999999987632        22233322222222222 234556666665544433


Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHhccccCCCCchHHHHHHHHH----HhcCChhHH
Q 012265           99 MQNFQLARVLDLRLSPKQREAIYANRVLLLL---HANKMDQARELVAALPDMFPDSVMPLLLQAAVL----VRENKAGKA  171 (467)
Q Consensus        99 ~~~~~~~~~l~~kL~~~q~~~l~~n~all~l---~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~----~~~~~~~~A  171 (467)
                      |++                ..++.+.+.++.   ..++.++|++.+++++..+|++..+....+..+    ...+++++|
T Consensus       169 p~~----------------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a  232 (472)
T 4g1t_A          169 PKN----------------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG  232 (472)
T ss_dssp             TTC----------------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHH
T ss_pred             CCC----------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence            321                234455555544   356788899999999999999988776665544    346788999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc-----------------
Q 012265          172 EELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA-----------------  233 (467)
Q Consensus       172 ~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~-----------------  233 (467)
                      ++.+++++..+|++.... ..+|.+|...|++++|+..|+++++..+ ++.++..++.+|..+                 
T Consensus       233 ~~~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          233 EKLVEEALEKAPGVTDVL-RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             HHHHHHHHHhCccHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999998764 8999999999999999999999998765 566677788777543                 


Q ss_pred             --CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH----HHHH--HHHhc
Q 012265          234 --GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA----LVGL--VTTSA  305 (467)
Q Consensus       234 --g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a----la~L--v~a~~  305 (467)
                        +.++.|+..+++++...    +..   ...+..+|.++...|++++|+.+|++++..+++...    ...+  +..+.
T Consensus       312 ~~~~~~~A~~~~~~a~~~~----~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~  384 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEAN----DNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ  384 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----TTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHhhcC----Cch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence              22455556666655432    111   123555899999999999999999999998865321    1111  22345


Q ss_pred             cCChhHHHHHHh
Q 012265          306 HVDVDKAESYEK  317 (467)
Q Consensus       306 ~~d~~kA~~l~~  317 (467)
                      ..+.++|..+..
T Consensus       385 ~~~~~~Ai~~y~  396 (472)
T 4g1t_A          385 MKCEDKAIHHFI  396 (472)
T ss_dssp             SSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            667788866543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.65  E-value=1.7e-14  Score=127.15  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      .++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++.+|.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-ATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Confidence            4677899999999999999999999999999999888899999999999999999999999999998775 488999999


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE  277 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~  277 (467)
                      ..|++++|+..|++++...+ ++.++..++.+|...|++++|+..+++++...    +.+   ...+..+|.++...|++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~~~~~  160 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNE---GKVHRAIAFSYEQMGRH  160 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHTTCH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccc---hHHHHHHHHHHHHcCCH
Confidence            99999999999999987654 67778889999999999999999999998752    211   23566689999999999


Q ss_pred             hHHHHHHHHHHHhcCC
Q 012265          278 EDASHLFEELVKTHGS  293 (467)
Q Consensus       278 ~~A~~~le~ll~~~pd  293 (467)
                      ++|...|++++..+|+
T Consensus       161 ~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          161 EEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999998765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.65  E-value=4.8e-14  Score=134.06  Aligned_cols=228  Identities=11%  Similarity=-0.026  Sum_probs=181.8

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      ..+++.+|.++...|++++|+..|++++.  +.+..+....+.-+.. .....+...++..+.+....            
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------   71 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------------   71 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------------
Confidence            35678899999999999999999999998  5666655544333222 01134566677666553221            


Q ss_pred             cCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHh
Q 012265          110 LRLSPKQREAIYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEK  181 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~  181 (467)
                            ....++++.+.++..    .+++++|...++++...  ++..++...+.++..    .+++++|+..|+++++.
T Consensus        72 ------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           72 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence                  123578899999999    99999999999998876  477788889999998    99999999999999997


Q ss_pred             CCCcHHHHHHHHHHHHHH----cCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 012265          182 LPDKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNA  253 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~----~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~  253 (467)
                      .  +... .+.++.+|..    .+++++|+..|+++++.. .+..+..++.+|..    .+++++|+.+|++++..    
T Consensus       144 ~--~~~a-~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----  215 (273)
T 1ouv_A          144 N--DGDG-CTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----  215 (273)
T ss_dssp             T--CHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----
T ss_pred             C--cHHH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----
Confidence            6  3333 4889999999    999999999999998764 46677789999999    99999999999999863    


Q ss_pred             ccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhcCC
Q 012265          254 MTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       254 ~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd  293 (467)
                        + +  ...+..+|.++..    .+++++|..+|+++++..|+
T Consensus       216 --~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          216 --E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             --T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             --C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence              1 1  2345668999999    99999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.63  E-value=7.9e-15  Score=159.16  Aligned_cols=169  Identities=13%  Similarity=0.036  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -+.++..||.+|..+|++++|+..|+++++.+|++..                                           
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-------------------------------------------   44 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-------------------------------------------   44 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-------------------------------------------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------------------------
Confidence            4567889999999999999999999999998886422                                           


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                                +++|++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++... 
T Consensus        45 ----------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a-  113 (723)
T 4gyw_A           45 ----------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA-  113 (723)
T ss_dssp             ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred             ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence                      345668888889999999999999999999999999999999999999999999999999999999875 


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      ++.||.+|..+|++++|+..|++++++++ ++.++..++.+|..+|++++|+..++++++..++
T Consensus       114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            48999999999999999999999998776 6778889999999999999999999999887644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=2.6e-15  Score=137.80  Aligned_cols=170  Identities=15%  Similarity=0.047  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH----------------HHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL----------------QAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll----------------~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                      ...+..+..++..|++++|+..+++++..+|++..+++.                .|.++...|++++|+..|+++++.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            356788999999999999999999999999999999888                9999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhccCCch
Q 012265          183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI--DGAAAVLDSAIKWWLNAMTEDNK  259 (467)
Q Consensus       183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~--~~A~~~l~~al~~~~~~~~~~~~  259 (467)
                      |++...+ +.+|.+|...|++++|+..|++++++++ ++..+..++.+|..+|+.  +.+...+.+++.      + ++ 
T Consensus        85 p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~------~-~~-  155 (208)
T 3urz_A           85 PNNVDCL-EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS------P-TK-  155 (208)
T ss_dssp             TTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C------C-CH-
T ss_pred             CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC------C-Cc-
Confidence            9998764 9999999999999999999999998876 678888999988766543  344445544431      1 11 


Q ss_pred             HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHH
Q 012265          260 LSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEAL  297 (467)
Q Consensus       260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~al  297 (467)
                      ....+...|..+...|++++|+..|+++++.+|+..+.
T Consensus       156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~  193 (208)
T 3urz_A          156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence            12234456888888999999999999999999986443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.62  E-value=3.8e-14  Score=133.82  Aligned_cols=218  Identities=11%  Similarity=-0.001  Sum_probs=170.2

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH----HHHHHhhhhhcc
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS----FAVAVNNLVALK   79 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~----~~va~nnl~~l~   79 (467)
                      .+..|...+++.+..+.-        ...++..+|.++..+|++++|+..|++++. .|.+...    +...+..+... 
T Consensus        18 ~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~-   87 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYN--------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK-   87 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCC--------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc-
Confidence            467888999888875421        224678899999999999999999999999 4555444    22233333222 


Q ss_pred             CCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHH
Q 012265           80 GPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQA  159 (467)
Q Consensus        80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a  159 (467)
                        ++...+...+.+.....++                ...++++.+.+++..|++++|+..+++++..+|.+..++...+
T Consensus        88 --~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           88 --GQDSLAIQQYQAAVDRDTT----------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             --TCHHHHHHHHHHHHHHSTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHhcCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence              4556666666554332221                1246889999999999999999999999999999999988888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC---hHHHHHHHhccccCC---CCh------hHHHHHH
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH---PFIAAESLAKIPDIQ---HMP------ATVATLV  227 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~---~~~A~~~L~~~~~~~---~~p------~~~~~l~  227 (467)
                      ..+...+++++|+..++++++.+|++... ++.++.++...|+   +++|+..|++++++.   +.+      .++..++
T Consensus       150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  228 (272)
T 3u4t_A          150 QAYYYNKEYVKADSSFVKVLELKPNIYIG-YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA  228 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccchHH-HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            44555669999999999999999999765 4889999999999   999999999998643   221      3567799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHH
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      .+|...|++++|+..|++++...
T Consensus       229 ~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          229 YYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.62  E-value=2.6e-14  Score=132.63  Aligned_cols=171  Identities=10%  Similarity=0.050  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR  193 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L  193 (467)
                      ..+++.+..++..|++++|+..+++++..+|++.   .+++..|.++...|++++|+..|+++++.+|++..  .+++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            4578999999999999999999999999999875   46788899999999999999999999999999754  245788


Q ss_pred             HHHHHH------------------cCChHHHHHHHhccccCCC-ChhHH-----------------HHHHHHHHHcCCHH
Q 012265          194 AQVAAA------------------ANHPFIAAESLAKIPDIQH-MPATV-----------------ATLVALKERAGDID  237 (467)
Q Consensus       194 aql~~~------------------~g~~~~A~~~L~~~~~~~~-~p~~~-----------------~~l~~ly~~~g~~~  237 (467)
                      |.+|..                  +|++++|+..|+++++..+ ++.+.                 ..++.+|...|+++
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  164 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV  164 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            888876                  6799999999999997654 33222                 35677888899999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +|+..|++++..++    +++....++..+|.++...|++++|+..|+.+....|+
T Consensus       165 ~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          165 AVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            99999999887642    23333455666889999999999999999888876664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.61  E-value=6.5e-15  Score=152.67  Aligned_cols=216  Identities=7%  Similarity=-0.039  Sum_probs=174.0

Q ss_pred             hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh-hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHH
Q 012265           44 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV-NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA  122 (467)
Q Consensus        44 ~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~  122 (467)
                      ..++++|+..++.+....|.+..+++..+..+...   +++ .++...+.+.....|+                ...+++
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~~A~~~~~~al~~~p~----------------~~~a~~  141 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT---PDYSPEAEVLLSKAVKLEPE----------------LVEAWN  141 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS---SSCCHHHHHHHHHHHHHCTT----------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhCCC----------------CHHHHH
Confidence            34477888889988888888888777665555433   345 5566655554333221                234788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc---------CChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE---------NKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~---------~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                      +.+.+++..|++++|...+++++..+|+ ..++...|.++...         |++++|+..|+++++.+|++...+ +.+
T Consensus       142 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l  219 (474)
T 4abn_A          142 QLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW-YIL  219 (474)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH-HHH
Confidence            9999999999999999999999999999 57778888889888         999999999999999999998754 899


Q ss_pred             HHHHHHc--------CChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          194 AQVAAAA--------NHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       194 aql~~~~--------g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      |.+|...        |++++|+..|++++.+++    ++.++..++.+|..+|++++|+..|++++...       +...
T Consensus       220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~  292 (474)
T 4abn_A          220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-------PAWP  292 (474)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence            9999999        999999999999987654    67788899999999999999999999999763       2223


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEEL  287 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~l  287 (467)
                      ..+..++.++...|++++|+..+.++
T Consensus       293 ~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          293 EPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45667899999999999998877655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=1.6e-13  Score=133.55  Aligned_cols=227  Identities=9%  Similarity=0.044  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHhhhhhc----cCCCCh-------hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           48 QEAFGAYTDIIKRNLADESSFAVAVNNLVAL----KGPKDV-------NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        48 ~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l----~~~~~~-------~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      ++|..+|++++..+|.++.+++-.+.-+...    ...++.       .++...+.+....              +. +.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------~~-p~   97 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------LL-KK   97 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--------------TT-TT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--------------hC-cc
Confidence            7899999999999999998886443322211    011222       4444444443321              00 12


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ...++++.+.++...|++++|+..++++++.+|++.. ++...+.++.+.|++++|+.+|+++++..|.+... ++..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~a~  176 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAAL  176 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH-HHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH-HHHHHH
Confidence            3357889999999999999999999999999999886 78888888889999999999999999998887543 344454


Q ss_pred             HHHH-cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          196 VAAA-ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       196 l~~~-~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      +... .|++++|+.+|++++...+ ++.++..++.++...|++++|+.+|++++...  ..+ +.....+|...+.++..
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~-p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLP-PEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSC-GGGCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHHHHH
Confidence            4333 7999999999999987654 67888889999999999999999999998620  001 11234567777899999


Q ss_pred             CCChhHHHHHHHHHHHhcCC
Q 012265          274 HGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~pd  293 (467)
                      .|++++|..+++++++.+|+
T Consensus       254 ~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          254 IGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSCHHHHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHHHccc
Confidence            99999999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=8.5e-15  Score=151.78  Aligned_cols=182  Identities=10%  Similarity=-0.067  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHHHcCCH-HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKM-DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~-~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ...++++.+.+++..|++ ++|+..++++++.+|++..++...|.++...|++++|+..|+++++.+|+ .. ++..+|.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV-SLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH-HHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH-HHHHHHH
Confidence            346788999999999999 99999999999999999999999999999999999999999999999999 44 4589999


Q ss_pred             HHHHc---------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhccCC
Q 012265          196 VAAAA---------NHPFIAAESLAKIPDIQH-MPATVATLVALKERA--------GDIDGAAAVLDSAIKWWLNAMTED  257 (467)
Q Consensus       196 l~~~~---------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~--------g~~~~A~~~l~~al~~~~~~~~~~  257 (467)
                      +|...         |++++|+..|++++++.+ ++.++..++.+|...        |++++|+..|++++...+.    .
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~  254 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK----A  254 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG----G
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC----c
Confidence            99999         999999999999998765 677889999999999        9999999999999986321    0


Q ss_pred             chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265          258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS  304 (467)
Q Consensus       258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~  304 (467)
                      .....++..+|.++...|++++|...|+++++.+|+ ..++..+..++
T Consensus       255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL  302 (474)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            133446777899999999999999999999999986 45555555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.60  E-value=1.9e-14  Score=136.16  Aligned_cols=198  Identities=10%  Similarity=0.021  Sum_probs=152.9

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -..+++.+|.++..+|++++|+..|++++...|.+...                                          
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------------------------------   51 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA------------------------------------------   51 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH------------------------------------------
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch------------------------------------------
Confidence            44678999999999999999999999999998864210                                          


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHh--------cCChhHHHHHHHHH
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVR--------ENKAGKAEELLGQF  178 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~--------~~~~~~A~~~l~~~  178 (467)
                              ..++++.+.+++..|++++|+..+++++..+|++.   .+++..|.++..        .|++++|+..|+++
T Consensus        52 --------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~  123 (261)
T 3qky_A           52 --------ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF  123 (261)
T ss_dssp             --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence                    02456778888888999999999999988888653   356677888888        88999999999999


Q ss_pred             HHhCCCcHHH--HH--------------HHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHc-----
Q 012265          179 AEKLPDKSKI--IL--------------LARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERA-----  233 (467)
Q Consensus       179 l~~~P~~~~~--~~--------------l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~-----  233 (467)
                      +..+|++...  +.              +.+|.+|...|++++|+..|+++++..+    .+..+..++.+|..+     
T Consensus       124 l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  203 (261)
T 3qky_A          124 IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV  203 (261)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch
Confidence            9998886432  11              6789999999999999999999986543    345677889999877     


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265          234 -----GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       234 -----g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                           |++++|+..|++++..++    +++........++.++...++++++.
T Consensus       204 ~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          204 RARQPERYRRAVELYERLLQIFP----DSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHCT----TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhcccchHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                 899999999999998653    33444444555566666666655443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.58  E-value=1.2e-13  Score=127.56  Aligned_cols=165  Identities=15%  Similarity=0.053  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCC-CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p-~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..++.+|.++..+|++++|+..|++++...| .+..++                                          
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------------------------------   45 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTA------------------------------------------   45 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHH------------------------------------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHH------------------------------------------
Confidence            4578899999999999999999999999987 444333                                          


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--  188 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~--  188 (467)
                                 ++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..|+++++.+|++...  
T Consensus        46 -----------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  114 (228)
T 4i17_A           46 -----------YNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEK  114 (228)
T ss_dssp             -----------HHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             -----------HHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence                       3344455555555555555555555555555555555555555555555555555555555554310  


Q ss_pred             ----HHHHHHHHHHHcCChHHHHHHHhccccCCCC---hhHHHHHHHHHHHcCCH-------------------------
Q 012265          189 ----ILLARAQVAAAANHPFIAAESLAKIPDIQHM---PATVATLVALKERAGDI-------------------------  236 (467)
Q Consensus       189 ----~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~~g~~-------------------------  236 (467)
                          +++.+|.++...|++++|+..|++++++.+.   +..+..++.+|..+|+.                         
T Consensus       115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  194 (228)
T 4i17_A          115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA  194 (228)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence                1244555555555555555555555544322   23344445555544444                         


Q ss_pred             --HHHHHHHHHHHHH
Q 012265          237 --DGAAAVLDSAIKW  249 (467)
Q Consensus       237 --~~A~~~l~~al~~  249 (467)
                        ++|+..|++++..
T Consensus       195 ~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          195 AFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence              8888888888875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=139.69  Aligned_cols=247  Identities=12%  Similarity=0.003  Sum_probs=163.5

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--------CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--------NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM   99 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--------~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~   99 (467)
                      ++...++..+|.++..+|++++|+..|++++..        .|....++...+..+...   ++...+...+.+..... 
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~-   99 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ---NKYKDAANLLNDALAIR-   99 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH-
Confidence            345577899999999999999999999999985        333333333333333323   34555555554432211 


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC--------CCCchHHHHHHHHHHhcCChhHH
Q 012265          100 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF--------PDSVMPLLLQAAVLVRENKAGKA  171 (467)
Q Consensus       100 ~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~--------P~~~~~~ll~a~l~~~~~~~~~A  171 (467)
                            ..... -..+....++++.+.++...|++++|...+++++...        |....++...|.++...|++++|
T Consensus       100 ------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  172 (311)
T 3nf1_A          100 ------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV  172 (311)
T ss_dssp             ------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             ------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence                  00000 0112345678899999999999999999999888664        44445667788899999999999


Q ss_pred             HHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC---------C-Ch------hHHHHHH
Q 012265          172 EELLGQFAEK--------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ---------H-MP------ATVATLV  227 (467)
Q Consensus       172 ~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---------~-~p------~~~~~l~  227 (467)
                      +..+++++..        +|.... ++..+|.+|...|++++|+..|+++++..         . ..      ..+..++
T Consensus       173 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
T 3nf1_A          173 EYYYQRALEIYQTKLGPDDPNVAK-TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK  251 (311)
T ss_dssp             HHHHHHHHHHHHHTSCTTCHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence            9999999987        555444 35889999999999999999999997521         1 11      1222334


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ..+...+.+.+|...+..+...       .+....++..+|.++...|++++|..+|+++++..|+
T Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          252 GKQKDGTSFGEYGGWYKACKVD-------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CchhhHHHHHHHHHHHhhcCCC-------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            4444555666666666665542       2344456777899999999999999999999987653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.57  E-value=5.8e-14  Score=132.34  Aligned_cols=234  Identities=16%  Similarity=0.077  Sum_probs=163.2

Q ss_pred             chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC
Q 012265            3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK   82 (467)
Q Consensus         3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~   82 (467)
                      .++..|.+++++.+..+.       .+...++..+|.++..+|++++|+..|++++....           ..  .+. .
T Consensus        22 ~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~--~~~-~   80 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDH-------PDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KT--LGK-D   80 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSS-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HH--TCT-T
T ss_pred             HHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HH--cCC-c
Confidence            456677777776664331       23567889999999999999999999998875420           00  000 0


Q ss_pred             ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchH
Q 012265           83 DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMP  154 (467)
Q Consensus        83 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~  154 (467)
                      .                               +....++.+.+.++...|++++|...+++++..        +|....+
T Consensus        81 ~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           81 H-------------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             C-------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             c-------------------------------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            0                               011235678899999999999999999988866        3555666


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---------C
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEK--------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---------Q  217 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---------~  217 (467)
                      +...|.++...|++++|+..+++++..        .|.... ++..+|.+|...|++++|+..|++++++         .
T Consensus       130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  208 (283)
T 3edt_B          130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK-TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN  208 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            778889999999999999999999988        555544 4588999999999999999999999753         1


Q ss_pred             C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          218 H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       218 ~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      . ...++..++.++...+....+ ..+..+..++.......+.....+..+|.++...|++++|..+|+++++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          209 GDNKPIWMHAEEREESKDKRRDS-APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             SSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            1 223455555555554444433 34555555554433344555567778999999999999999999999864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.56  E-value=1.7e-13  Score=137.03  Aligned_cols=236  Identities=11%  Similarity=-0.028  Sum_probs=168.6

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhcc---CCCch---HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKR---NLADE---SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~---~p~d~---~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      +.+|.++..+|++++|+..|++++..   .+++.   .++...+..+..   .++...++..+.+.....+.       .
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~-------~  176 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY---MKQTYFSMDYARQAYEIYKE-------H  176 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHT-------C
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHh-------C
Confidence            34899999999999999999999886   23222   222222222222   24556666665544322110       0


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCChhHHHHHHHHHHH--
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAE--  180 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~~~~A~~~l~~~l~--  180 (467)
                        .-.......++.+.+.++...|++++|...+++++...+...      .++...|.++...|++++|+..+++++.  
T Consensus       177 --~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          177 --EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             --STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence              001234456788999999999999999999999887655432      2456788899999999999999999998  


Q ss_pred             ---hC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---Ch---hHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 012265          181 ---KL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MP---ATVATLVALKERAGD---IDGAAAVLDSAI  247 (467)
Q Consensus       181 ---~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p---~~~~~l~~ly~~~g~---~~~A~~~l~~al  247 (467)
                         .+ |.... +.+.+|.+|...|++++|+..|++++++..   ++   ..+..++.+|...|+   +++|+.++++.-
T Consensus       255 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~  333 (383)
T 3ulq_A          255 EESNILPSLPQ-AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM  333 (383)
T ss_dssp             HHTTCGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred             HhhccchhHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence               45 65554 458999999999999999999999986421   22   224568999999999   455555554431


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                              ..+....++..+|.++...|++++|...|++++...
T Consensus       334 --------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          334 --------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                    223344566778999999999999999999999865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=2.7e-13  Score=119.26  Aligned_cols=167  Identities=14%  Similarity=0.034  Sum_probs=144.9

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL  110 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  110 (467)
                      ..++..+|.++...|++++|+..|++++...|.+..                                            
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------------   43 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD--------------------------------------------   43 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH--------------------------------------------
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH--------------------------------------------
Confidence            456788999999999999999999998877664311                                            


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                               ++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++..+|++... +
T Consensus        44 ---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~  113 (186)
T 3as5_A           44 ---------VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV-R  113 (186)
T ss_dssp             ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-H
T ss_pred             ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH-H
Confidence                     234557777888999999999999999999999888889999999999999999999999999998765 4


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      +.+|.+|...|++++|+..|++++...+ .+.++..++.+|...|++++|...+++++...+
T Consensus       114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999987654 667788899999999999999999999988754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=7.3e-13  Score=132.50  Aligned_cols=273  Identities=10%  Similarity=-0.045  Sum_probs=186.5

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCC---CchHHHH---H-HHhhhhhccC-----------CCChhHHHHhhhh
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL---ADESSFA---V-AVNNLVALKG-----------PKDVNDSLKKLDR   93 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p---~d~~~~~---v-a~nnl~~l~~-----------~~~~~~a~~~l~~   93 (467)
                      ...+.-.|.+..++++++|..+++.+...-+   .|..+.+   + .....+.+..           .....+.++.+..
T Consensus        13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~   92 (383)
T 3ulq_A           13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK   92 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence            5567788999999999999999999966532   2443331   1 1000000110           0111133443332


Q ss_pred             hhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHHHhcCC
Q 012265           94 IKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVLVRENK  167 (467)
Q Consensus        94 ~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~~~~~~  167 (467)
                      ....       .+.       ...--.++..+.+++..|++++|...+++++..   .++.   ..++...|.++...|+
T Consensus        93 ~~~~-------~~~-------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~  158 (383)
T 3ulq_A           93 KQAR-------LTG-------LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ  158 (383)
T ss_dssp             HTHH-------HHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCC-------chh-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            1110       000       011124566899999999999999999988765   3332   3456678889999999


Q ss_pred             hhHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHcCChHHHHHHHhccccCCC----C---hhHHHHHHHHHHHcC
Q 012265          168 AGKAEELLGQFAEKLPDKS------KIILLARAQVAAAANHPFIAAESLAKIPDIQH----M---PATVATLVALKERAG  234 (467)
Q Consensus       168 ~~~A~~~l~~~l~~~P~~~------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~---p~~~~~l~~ly~~~g  234 (467)
                      +++|+..+.++++..+...      ..++..+|.+|...|++++|+..|++++++..    .   ..++..++.+|..+|
T Consensus       159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence            9999999999998754321      12457899999999999999999999986421    1   135678999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---CHH---HHHHHHHHhccCC
Q 012265          235 DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---SIE---ALVGLVTTSAHVD  308 (467)
Q Consensus       235 ~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d~~---ala~Lv~a~~~~d  308 (467)
                      ++++|+..|++++...+... ..+.....+..+|.++...|++++|...|++++...+   +..   .+..+...+....
T Consensus       239 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~  317 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP  317 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred             CHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999875532 1144456677899999999999999999999998752   321   1233444554433


Q ss_pred             ----hhHHHHHHhcC
Q 012265          309 ----VDKAESYEKRL  319 (467)
Q Consensus       309 ----~~kA~~l~~~L  319 (467)
                          ..+|..+.+..
T Consensus       318 ~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          318 DEEAIQGFFDFLESK  332 (383)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHC
Confidence                56677766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.55  E-value=4.7e-14  Score=152.71  Aligned_cols=169  Identities=18%  Similarity=0.099  Sum_probs=150.3

Q ss_pred             HHcCCHHHHHHHHHhcc--------ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          129 LHANKMDQARELVAALP--------DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       129 l~~~~~~~A~~~~~~l~--------~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      +..|++++|++.+++++        ..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL-VWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH-HHHHHHHHHHc
Confidence            77899999999999999        8999999999999999999999999999999999999999875 48999999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED  279 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~  279 (467)
                      |++++|+..|++++++++ ++..+..++.+|..+|++++ +..|++++...       +....++..+|.++...|++++
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCHHH
Confidence            999999999999998775 67888899999999999999 99999999752       2223467778999999999999


Q ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265          280 ASHLFEELVKTHGS-IEALVGLVTTSAH  306 (467)
Q Consensus       280 A~~~le~ll~~~pd-~~ala~Lv~a~~~  306 (467)
                      |+..|+++++.+|+ ..++..+..++..
T Consensus       553 A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          553 AVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999987 5677777777633

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=2.4e-13  Score=128.26  Aligned_cols=196  Identities=16%  Similarity=0.039  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                      .+....++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~l  117 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNR  117 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-HHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHH-HHHH
Confidence            345566889999999999999999999999999999999999999999999999999999999999999998765 4899


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      |.+|...|++++|+..|++++++.+..........++...|++++|+..+.+++...    +.+..   .+. ++.+++.
T Consensus       118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~-~~~~~~~  189 (275)
T 1xnf_A          118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQW---GWN-IVEFYLG  189 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCST---HHH-HHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CcchH---HHH-HHHHHHH
Confidence            999999999999999999999766533333344456677899999999999988752    22222   222 5777888


Q ss_pred             CCChhHHHHHHHHHHHhcCC-----HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265          274 HGREEDASHLFEELVKTHGS-----IEALVGLVTTS-AHVDVDKAESYEKR  318 (467)
Q Consensus       274 ~g~~~~A~~~le~ll~~~pd-----~~ala~Lv~a~-~~~d~~kA~~l~~~  318 (467)
                      .++.++|...|++++...|.     ..++..+..++ ...+.++|..+...
T Consensus       190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  240 (275)
T 1xnf_A          190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL  240 (275)
T ss_dssp             SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999887653     35566666666 45668888877654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=4.2e-13  Score=145.29  Aligned_cols=191  Identities=15%  Similarity=0.122  Sum_probs=151.7

Q ss_pred             HHhCChHHHHHHHHHHh--------ccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           42 QLLGNTQEAFGAYTDII--------KRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        42 ~~~G~~~eA~~~y~~~l--------~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      ...|++++|++.|++++        ..+|++..+++..+..+...+   +..+|...+.++....|+             
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~-------------  465 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGW-------------  465 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCC-------------
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcc-------------
Confidence            67899999999999999        888998888876555554444   455555555544333222             


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                         ...++++.+.+++..|++++|+..|+++++.+|++..+++..|.++...|++++ +..|+++++.+|++... ++.+
T Consensus       466 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a-~~~l  540 (681)
T 2pzi_A          466 ---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA-AFGL  540 (681)
T ss_dssp             ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH-HHHH
T ss_pred             ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH-HHHH
Confidence               235789999999999999999999999999999999999999999999999999 99999999999999875 4999


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA-AAVLDSAIKWWLNA  253 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~~~~  253 (467)
                      |.+|...|++++|+..|++++++++ ++..+..++.+|...++.+++ ...+++|+..+...
T Consensus       541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            9999999999999999999998876 466777888888887775555 56666776665443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.53  E-value=2.3e-13  Score=124.74  Aligned_cols=181  Identities=12%  Similarity=0.029  Sum_probs=145.0

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..+++.|..+..+|++++|+..|++++..+|++..+++...     +..  . .                          
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----~~~--~-~--------------------------   50 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN-----VDK--N-S--------------------------   50 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-----SCT--T-S--------------------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh-----hcc--h-h--------------------------
Confidence            34688999999999999999999999999998877665321     100  0 0                          


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                         .....+.++.+.++...|++++|+..++++++.+|++..+++..|.++...|++++|+..|+++++.+|++... ++
T Consensus        51 ---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~  126 (208)
T 3urz_A           51 ---EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA-NI  126 (208)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HH
T ss_pred             ---hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HH
Confidence               00123567889999999999999999999999999999999999999999999999999999999999999876 48


Q ss_pred             HHHHHHHHcCC--hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANH--PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       192 ~Laql~~~~g~--~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      .+|.+|...|+  ...+...+.+++...+....+..++..+...|++++|+..|++++..+
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999977654  556777888876543322235567888888999999999999999753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=2.9e-13  Score=120.40  Aligned_cols=161  Identities=14%  Similarity=0.074  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ..+.+|.++...|++++|+..|++++..+|++..                                              
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----------------------------------------------   41 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD----------------------------------------------   41 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH----------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----------------------------------------------
Confidence            3578899999999999999999998887765432                                              


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHH-HhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVL-VRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                             ++++.+.+++..|++++|+..+++++..+| +.....+.+.+. ...+...+|+..|+++++.+|++... ++
T Consensus        42 -------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~-~~  112 (176)
T 2r5s_A           42 -------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL-AC  112 (176)
T ss_dssp             -------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHH-HH
T ss_pred             -------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHH-HH
Confidence                   344567788889999999999999999999 766555555443 33344556899999999999999875 49


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHM---PATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      .+|.+|...|++++|+..|++++...+.   +.++..++.+|..+|+.++|+..|++++.
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999987753   45788999999999999999999998875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=3.1e-13  Score=130.42  Aligned_cols=163  Identities=15%  Similarity=0.046  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++.+|..+..+|++++|+.+|++++..+|++..                                             
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------------------------------------  152 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE---------------------------------------------  152 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH---------------------------------------------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh---------------------------------------------
Confidence            45788999999999999999999999998885532                                             


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                              ++++.+.+++..|++++|...+++++..+|+.....+..+..+...++.++|+..|++++..+|++... ++
T Consensus       153 --------a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~-~~  223 (287)
T 3qou_A          153 --------IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAAL-AT  223 (287)
T ss_dssp             --------HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHH-HH
T ss_pred             --------HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHH-HH
Confidence                    234567888999999999999999999999766555555555778889999999999999999999875 59


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-C--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-M--PATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~--p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      .||.+|...|++++|+..|++++..++ .  +.++..++.+|...|+.++|...|++++.
T Consensus       224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999997665 2  66788999999999999999999998875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.50  E-value=2.3e-13  Score=131.59  Aligned_cols=239  Identities=12%  Similarity=0.006  Sum_probs=165.8

Q ss_pred             chHHHHHHHhhhh-----hcCCCCC-hhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh
Q 012265            3 LMYLIFVRIGQET-----LTDDNFA-EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV   76 (467)
Q Consensus         3 ~~l~~A~~~~~~~-----l~~~~~~-~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~   76 (467)
                      .++..|++.++.+     +-.  -. ++ .-.+-.....+.+.+|..+|++++|+..|.+++...+.             
T Consensus         6 ~~~~~a~k~~~~~~~~~~~~~--~~~~~-~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-------------   69 (292)
T 1qqe_A            6 ELLKRAEKKGVPSSGFMKLFS--GSDSY-KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-------------   69 (292)
T ss_dssp             HHHHHHHHHSSCCCTHHHHHS--CCSHH-HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHhCcCCCcchhcC--CCCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------
Confidence            3567788877653     321  11 22 23344456667788888999999999999888764210             


Q ss_pred             hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc----
Q 012265           77 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----  152 (467)
Q Consensus        77 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~----  152 (467)
                       +   .+.                              .....++.|.+.++...|++++|+..+++++..+|...    
T Consensus        70 -~---~~~------------------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           70 -A---GNE------------------------------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             -T---TCH------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -h---CCH------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence             0   000                              01123567889999999999999999999888776532    


Q ss_pred             --hHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch---
Q 012265          153 --MPLLLQAAVLVRE-NKAGKAEELLGQFAEKLPDKS-----KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP---  220 (467)
Q Consensus       153 --~~~ll~a~l~~~~-~~~~~A~~~l~~~l~~~P~~~-----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p---  220 (467)
                        .++...|.++... |++++|+..|+++++.+|++.     ..++..+|.+|..+|++++|+..|++++++.+ .+   
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence              2445677788886 999999999999999877531     12357889999999999999999999987543 11   


Q ss_pred             ----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--HCCChhHHHHHHHHHHHhcCC
Q 012265          221 ----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL--RHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       221 ----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l--~~g~~~~A~~~le~ll~~~pd  293 (467)
                          .++..++.+|..+|++++|+..|++++...+.... ... ...+..++..+.  ..+++++|+..|++++..+|.
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence                14567899999999999999999999875433221 111 123444455553  357789999999998887765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.50  E-value=8.3e-13  Score=122.39  Aligned_cols=167  Identities=8%  Similarity=-0.001  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..++++|..+..+|++++|+..|++++...|.+...                                            
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------------------------------------   40 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS--------------------------------------------   40 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--------------------------------------------
Confidence            346889999999999999999999999988854210                                            


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHh------------------cCChhH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVR------------------ENKAGK  170 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~------------------~~~~~~  170 (467)
                            ..++++.+.+++..|++++|+..++++++.+|++..   +++..|.++..                  .|++++
T Consensus        41 ------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (225)
T 2yhc_A           41 ------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA  114 (225)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence                  013456677777888888888888888888887764   45556665543                  567888


Q ss_pred             HHHHHHHHHHhCCCcHHHH----------------HHHHHHHHHHcCChHHHHHHHhccccCCC-Ch---hHHHHHHHHH
Q 012265          171 AEELLGQFAEKLPDKSKII----------------LLARAQVAAAANHPFIAAESLAKIPDIQH-MP---ATVATLVALK  230 (467)
Q Consensus       171 A~~~l~~~l~~~P~~~~~~----------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p---~~~~~l~~ly  230 (467)
                      |+..|+++++.+|++....                .+.+|.+|...|++++|+..|+++++..+ ++   .++..++.+|
T Consensus       115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  194 (225)
T 2yhc_A          115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY  194 (225)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence            8888888888888865321                15678899999999999999999987544 33   5678899999


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 012265          231 ERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~  248 (467)
                      ..+|++++|+..++.+..
T Consensus       195 ~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          195 RQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHh
Confidence            999999999999998765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.49  E-value=8.3e-12  Score=123.95  Aligned_cols=276  Identities=12%  Similarity=0.010  Sum_probs=186.9

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC--chHHHHHHHhhhhh-ccCC
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAVAVNNLVA-LKGP   81 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~--d~~~~~va~nnl~~-l~~~   81 (467)
                      +..|...+++.|....  ..+ ......+...+|.++..+|++++|...|++++...+.  +......+.+++.. ....
T Consensus        30 ~~~A~~~~~~al~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           30 PDEAERLAKLALEELP--PGW-FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             HHHHHHHHHHHHHTCC--TTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCC--CCc-hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            5678888888887432  111 1123456778999999999999999999999887543  22222222222211 1112


Q ss_pred             CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC-----chHHH
Q 012265           82 KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS-----VMPLL  156 (467)
Q Consensus        82 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~-----~~~~l  156 (467)
                      +++..+...+.+......       ..... ..+....++.+.+.+++..|++++|...+++.+...+..     ..++.
T Consensus       107 G~~~~A~~~~~~al~~~~-------~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLIN-------EQHLE-QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHH-------HTTCT-TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH-------Hhccc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            455556555554322110       00000 001234567789999999999999999999988777653     23455


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCC--c-HHHH---HHHHHHHHHHcCChHHHHHHHhccccCCCC-----hhHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPD--K-SKII---LLARAQVAAAANHPFIAAESLAKIPDIQHM-----PATVAT  225 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~--~-~~~~---~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-----p~~~~~  225 (467)
                      ..+.++...|++++|+..+++++...+.  . ....   .+.++.++...|++++|...+++++.....     ...+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            7788899999999999999999876322  2 1111   114556688999999999999999865431     123567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                      ++.++...|++++|...+++++....... .......++..+|.++...|++++|...|++++...+
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            89999999999999999999998765422 1112223455679999999999999999999998763

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.49  E-value=5.9e-14  Score=121.98  Aligned_cols=145  Identities=10%  Similarity=0.025  Sum_probs=120.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      .+.++...|++++|+..++.....+|++....+..|.+|...|++++|+..|+++++.+|++... ++.+|.+|...|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-HRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCch
Confidence            45566677889999999999999999988888999999999999999999999999999999876 48999999999999


Q ss_pred             HHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265          204 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA-VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR  276 (467)
Q Consensus       204 ~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~-~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~  276 (467)
                      ++|+..|++++++++ ++.++..++.+|...|++++|.. ++++++...    |+++   .++...+.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~---~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSP---AVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCH---HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCH---HHHHHHHHHHHHhCc
Confidence            999999999998876 78889999999999999987665 468998763    2222   234445777777775

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=2.4e-12  Score=125.20  Aligned_cols=219  Identities=11%  Similarity=0.007  Sum_probs=166.0

Q ss_pred             HHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHH-------HhCCh-------HHHHHHHHHHhc-cCCCchHHHHH
Q 012265            6 LIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ-------LLGNT-------QEAFGAYTDIIK-RNLADESSFAV   70 (467)
Q Consensus         6 ~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~-------~~G~~-------~eA~~~y~~~l~-~~p~d~~~~~v   70 (467)
                      ..|...++..+..+        +.-..+|+.+|.++.       ..|++       ++|..+|++++. ..|++..++..
T Consensus        33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~  104 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA  104 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHH
Confidence            45666666666532        334467888887776       35886       999999999999 68988877654


Q ss_pred             HHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC
Q 012265           71 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD  150 (467)
Q Consensus        71 a~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~  150 (467)
                      .+.-+...   ++...+...+.++....|.               ....++.+.+.++...|++++|+..+++++...|.
T Consensus       105 ~~~~~~~~---~~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          105 YADYEESR---MKYEKVHSIYNRLLAIEDI---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHHHT---TCHHHHHHHHHHHHTSSSS---------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHhc---CCHHHHHHHHHHHHhcccc---------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            43333222   3455555555443322111               11126788899999999999999999999999998


Q ss_pred             CchHHHHHHHHHH-hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---CC--ChhHHH
Q 012265          151 SVMPLLLQAAVLV-RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---QH--MPATVA  224 (467)
Q Consensus       151 ~~~~~ll~a~l~~-~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~--~p~~~~  224 (467)
                      +..+++..+.+.. ..|++++|+.+|+++++.+|++...+ +.++.++...|++++|+.+|++++..   .+  ...++.
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~  245 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV-LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA  245 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            8777665554433 37999999999999999999998764 89999999999999999999999874   32  445788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      .++.++...|+.+.|..++++++..++
T Consensus       246 ~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          246 RFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            889999999999999999999998754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.49  E-value=4.9e-12  Score=125.60  Aligned_cols=274  Identities=17%  Similarity=0.023  Sum_probs=182.9

Q ss_pred             hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH-HHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS-FAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~-~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      ..+.+.+|.++..+|++++|...+++++...|.+... ...+.+++.. ....++...+...+.+.....+.       .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~   86 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------H   86 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-------c
Confidence            3456778999999999999999999999987754332 2222222211 11123455555555443222111       0


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC--------CCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP--------DSVMPLLLQAAVLVRENKAGKAEELLGQFAE  180 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P--------~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~  180 (467)
                         -.......+.++.+.+++..|++++|...+++++...+        ....+....+.++...|++++|+..+.+++.
T Consensus        87 ---~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (373)
T 1hz4_A           87 ---DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  163 (373)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence               01122334578899999999999999999998876542        2223455678889999999999999999999


Q ss_pred             hCCCc----HHHHHHHHHHHHHHcCChHHHHHHHhccccCC---CCh-hHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          181 KLPDK----SKIILLARAQVAAAANHPFIAAESLAKIPDIQ---HMP-ATVA----TLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       181 ~~P~~----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---~~p-~~~~----~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      ..|..    ...++..++.++...|++++|...|++++.+.   ..+ .+..    .++.++...|++++|..++++++.
T Consensus       164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  243 (373)
T 1hz4_A          164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  243 (373)
T ss_dssp             HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            87652    11245789999999999999999999987531   122 2221    344568899999999999998874


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---CH----HHHHHHHHHh-ccCChhHHHHHHh
Q 012265          249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---SI----EALVGLVTTS-AHVDVDKAESYEK  317 (467)
Q Consensus       249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d~----~ala~Lv~a~-~~~d~~kA~~l~~  317 (467)
                      ..   +.........+..+|.+++..|++++|...|++++...+   ..    .++..+..++ ...+.+.|..+..
T Consensus       244 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          244 PE---FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             CC---CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CC---CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            21   111111122345679999999999999999999988652   11    2334444444 4566777766544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=8.1e-12  Score=118.55  Aligned_cols=221  Identities=14%  Similarity=0.039  Sum_probs=168.9

Q ss_pred             CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----cCCHHH
Q 012265           61 NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH----ANKMDQ  136 (467)
Q Consensus        61 ~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~----~~~~~~  136 (467)
                      +|.++.+.+..+..+...   .+...++..+.+....                  .....+++.+.++..    .+++++
T Consensus         2 ~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~------------------~~~~a~~~lg~~~~~g~~~~~~~~~   60 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKE---KDFTQAKKYFEKACDL------------------KENSGCFNLGVLYYQGQGVEKNLKK   60 (273)
T ss_dssp             ---CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCcCCCHHH
Confidence            355666665444433322   3556666666543221                  122467899999999    999999


Q ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHH
Q 012265          137 ARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAE  208 (467)
Q Consensus       137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~  208 (467)
                      |...++++....  +..++...+.++..    .+++++|+..|+++++..  +... .+.+|.+|..    .+++++|+.
T Consensus        61 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a-~~~lg~~~~~~~~~~~~~~~A~~  135 (273)
T 1ouv_A           61 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEG-CASLGGIYHDGKVVTRDFKKAVE  135 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-HHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccH-HHHHHHHHHcCCCcccCHHHHHH
Confidence            999999988764  67788888999999    999999999999999874  5554 4899999999    999999999


Q ss_pred             HHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHH
Q 012265          209 SLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDA  280 (467)
Q Consensus       209 ~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A  280 (467)
                      .|+++++.. .+..+..++.+|..    .+++++|+.+|++++..      ++   ...+..+|.++..    .+++++|
T Consensus       136 ~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~g~~~~~~~~~A  205 (273)
T 1ouv_A          136 YFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL------KD---SPGCFNAGNMYHHGEGATKNFKEA  205 (273)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCCCccHHHH
Confidence            999998765 46677789999998    99999999999999863      11   1345668999999    9999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhc-----cCChhHHHHHHhc
Q 012265          281 SHLFEELVKTHGSIEALVGLVTTSA-----HVDVDKAESYEKR  318 (467)
Q Consensus       281 ~~~le~ll~~~pd~~ala~Lv~a~~-----~~d~~kA~~l~~~  318 (467)
                      ..+|+++++..+ ..+...|..+|.     ..|.++|..+.++
T Consensus       206 ~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~  247 (273)
T 1ouv_A          206 LARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKK  247 (273)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            999999998765 556667776664     4667888776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.48  E-value=6.5e-14  Score=121.70  Aligned_cols=116  Identities=15%  Similarity=0.099  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.+|+..|++++|++.++++++.+|++..++...|.++...|++++|+..|+++++.+|++...+ +.+|.+|.
T Consensus        32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~  110 (150)
T 4ga2_A           32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLV-LKIAELLC  110 (150)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999998764 89999999


Q ss_pred             HcCChHHHHHH-HhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265          199 AANHPFIAAES-LAKIPDIQH-MPATVATLVALKERAGD  235 (467)
Q Consensus       199 ~~g~~~~A~~~-L~~~~~~~~-~p~~~~~l~~ly~~~g~  235 (467)
                      ..|++++|+.. +++++++++ +|.++...+.++..+|+
T Consensus       111 ~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          111 KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999887765 589988776 78888888888888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.48  E-value=3.6e-13  Score=129.97  Aligned_cols=165  Identities=13%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+..++..|++++|...+++++..+|++..+++..|.++...|++++|+..|++++..+|+.. ...+.++..+.
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~~~~~~l~  196 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-YQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-HHHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777543 23344444566


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE  277 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~  277 (467)
                      ..++.++|+..|++++...+ ++.++..++.+|...|++++|+..|.+++...+    +... ..++..++.++...|+.
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p----~~~~-~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL----TAAD-GQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TGGG-GHHHHHHHHHHHHHCTT
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccc-chHHHHHHHHHHHcCCC
Confidence            66777777777777766554 566666777777777777777777777766421    1100 22345567777777777


Q ss_pred             hHHHHHHHHHHH
Q 012265          278 EDASHLFEELVK  289 (467)
Q Consensus       278 ~~A~~~le~ll~  289 (467)
                      ++|...|++.+.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            777777777664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=2.2e-13  Score=121.15  Aligned_cols=163  Identities=13%  Similarity=0.071  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA-  198 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~-  198 (467)
                      ..+..+..++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|++++...| +... ...++.+.+ 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~-~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY-KSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-HHHHHHHHHH
Confidence            3567888999999999999999999999999999999999999999999999999999999999 6653 344555533 


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE  277 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~  277 (467)
                      ..+...+|+..|++++...+ ++.++..++.+|...|++++|+..|++++...    |+... ...+..+|.++...|+.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~-~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN----LGAQD-GEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTT-THHHHHHHHHHHHHCSS
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccCh-HHHHHHHHHHHHHhCCC
Confidence            33455568999999988765 67888899999999999999999999988642    11111 12456689999999999


Q ss_pred             hHHHHHHHHHHH
Q 012265          278 EDASHLFEELVK  289 (467)
Q Consensus       278 ~~A~~~le~ll~  289 (467)
                      ++|+..|++++.
T Consensus       161 ~~A~~~y~~al~  172 (176)
T 2r5s_A          161 NAIASKYRRQLY  172 (176)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=8.5e-13  Score=126.43  Aligned_cols=174  Identities=18%  Similarity=0.198  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----  182 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----  182 (467)
                      ....++++.+.+++..|++++|...+++++..        +|....++...|.++...|++++|+..+++++...     
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34457788999999999999999999998873        56566677788999999999999999999999863     


Q ss_pred             ---CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC------CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          183 ---PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI------QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       183 ---P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~------~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                         |.... ++..+|.+|...|++++|+..|++++++      ..   ...++..++.+|...|++++|+.+|++++..+
T Consensus       105 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          105 KDHPAVAA-TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             TTCHHHHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               33333 4588999999999999999999999864      21   23456788999999999999999999999887


Q ss_pred             HHhcc-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          251 LNAMT-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       251 ~~~~~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      ....+ +.+....++..+|.++...|++++|..+|++++..
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55422 23444556777899999999999999999999975

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=1.5e-12  Score=130.13  Aligned_cols=241  Identities=14%  Similarity=0.009  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCC--CchHHHHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADESSFAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~~~~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      .++.+|..+..+|++++|+..|++++....  .+......+..++.. ....++...++..+.+.....+.       . 
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-------~-  174 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-------H-  174 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------S-
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------C-
Confidence            456789999999999999999999987642  232222222222211 11124556666665543322110       0 


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---CC---chHHHHHHHHHHhcCChhHHHHHHHHHHH---
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---DS---VMPLLLQAAVLVRENKAGKAEELLGQFAE---  180 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~---  180 (467)
                       .-.......++.+.+.++...|++++|...+++++...+   +.   ..++...|.++...|++++|+..+++++.   
T Consensus       175 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          175 -PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             -CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             001223456788999999999999999999998876543   21   12455678889999999999999999999   


Q ss_pred             --hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C---hhHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 012265          181 --KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M---PATVATLVALKERAGD---IDGAAAVLDSAIKW  249 (467)
Q Consensus       181 --~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~---p~~~~~l~~ly~~~g~---~~~A~~~l~~al~~  249 (467)
                        .+|.... +.+.+|.+|...|++++|+..+++++++..   +   ...+..++.+|...++   +.+|+..+++.-  
T Consensus       254 ~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--  330 (378)
T 3q15_A          254 EKVPDLLPK-VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--  330 (378)
T ss_dssp             HHCGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--
T ss_pred             hhCChhHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--
Confidence              7777744 458999999999999999999999986321   2   2335667888888888   555555554421  


Q ss_pred             HHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       250 ~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                            ..+....++..+|.++...|++++|...|+++++..
T Consensus       331 ------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          331 ------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                  123344556678999999999999999999999754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.46  E-value=8.9e-11  Score=121.54  Aligned_cols=182  Identities=14%  Similarity=0.086  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          120 IYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       120 l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                      .+++.+.++..    .+++++|...+++....  ++..+....+.++..    .+++++|+..++++++..  +... .+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a-~~  259 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIA-QF  259 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHH-HH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH-HH
Confidence            45555666655    56666666666665542  344455555555554    556666666666665542  2222 35


Q ss_pred             HHHHHHHH----cCChHHHHHHHhccccCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265          192 ARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKERA-----GDIDGAAAVLDSAIKWWLNAMTEDNKLSV  262 (467)
Q Consensus       192 ~Laql~~~----~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~-----g~~~~A~~~l~~al~~~~~~~~~~~~~~~  262 (467)
                      .|+.+|..    .+++++|+.+|+++.+.. ++.....|+.+|...     +++++|+.+|++++..      ++   ..
T Consensus       260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~------~~---~~  329 (490)
T 2xm6_A          260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ------GD---AT  329 (490)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT------TC---HH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc------CC---HH
Confidence            66666666    666666666666665432 344455666666665     6666666666666542      01   12


Q ss_pred             HHHHHHHHHHHCC---ChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-----CChhHHHHHHh
Q 012265          263 IMQEAASFKLRHG---REEDASHLFEELVKTHGSIEALVGLVTTSAH-----VDVDKAESYEK  317 (467)
Q Consensus       263 ll~~la~~~l~~g---~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-----~d~~kA~~l~~  317 (467)
                      .+..+|.++...|   ++++|+.+|+++++. .+..++..|...|..     .|.++|..+.+
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  391 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR  391 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            2344566665544   556666666666654 344455555554432     45566655543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.46  E-value=8.7e-11  Score=121.62  Aligned_cols=184  Identities=15%  Similarity=0.039  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          119 AIYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       119 ~l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      ..+++.+.+++.    .+++++|...++++...  ++..+....+.++..    .+++++|+..|+++++.  ++... .
T Consensus       220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a-~  294 (490)
T 2xm6_A          220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG-Q  294 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH-H
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH-H
Confidence            467788888886    78899999999988754  556677778888877    88999999999998876  34444 4


Q ss_pred             HHHHHHHHHc-----CChHHHHHHHhccccCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265          191 LARAQVAAAA-----NHPFIAAESLAKIPDIQHMPATVATLVALKERAG---DIDGAAAVLDSAIKWWLNAMTEDNKLSV  262 (467)
Q Consensus       191 l~Laql~~~~-----g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~~~~~~~~~~~~~~  262 (467)
                      +.|+.+|...     +++++|+.+|+++.+.. ++.....|+.+|...|   ++++|+.+|++++..      ++   ..
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------~~---~~  364 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------GE---KA  364 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT------TC---HH
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC------CC---HH
Confidence            8899999988     89999999999988754 4566778888888866   788899999988763      11   23


Q ss_pred             HHHHHHHHHHH----CCChhHHHHHHHHHHHhcCCHHHHHHHHHHhc-----cCChhHHHHHHhc
Q 012265          263 IMQEAASFKLR----HGREEDASHLFEELVKTHGSIEALVGLVTTSA-----HVDVDKAESYEKR  318 (467)
Q Consensus       263 ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~-----~~d~~kA~~l~~~  318 (467)
                      .+..+|.++..    .+++++|+.+|+++++.. +..++..|...|.     ..|.++|..+..+
T Consensus       365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  428 (490)
T 2xm6_A          365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT  428 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            46668999988    889999999999998754 5667777777775     4778888776543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.42  E-value=2.1e-12  Score=136.51  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=121.0

Q ss_pred             cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265          131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL  210 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L  210 (467)
                      .|++++|...++++++.+|++..++...|.++...|++++|+..|+++++.+|++... ++.+|.+|..+|++++|+..|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA-VARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH-HHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999875 489999999999999999999


Q ss_pred             hccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC---CChhHHHHHHHH
Q 012265          211 AKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH---GREEDASHLFEE  286 (467)
Q Consensus       211 ~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~---g~~~~A~~~le~  286 (467)
                      +++++..+ ++..+..++.+|..+|++++|+..|++++...    +   ....++..+|.++...   |++++|...|++
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----P---EEPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            99998765 67788899999999999999999999999763    1   1223566689999999   999999999999


Q ss_pred             HHHhcCC
Q 012265          287 LVKTHGS  293 (467)
Q Consensus       287 ll~~~pd  293 (467)
                      +++.+|+
T Consensus       154 al~~~p~  160 (568)
T 2vsy_A          154 AVAQGVG  160 (568)
T ss_dssp             HHHHTCC
T ss_pred             HHhcCCc
Confidence            9999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.41  E-value=1.6e-10  Score=115.23  Aligned_cols=269  Identities=13%  Similarity=0.065  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCC---CchHHHH---HH-HhhhhhccCCC---------ChhHHHHhhhhhhhh
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNL---ADESSFA---VA-VNNLVALKGPK---------DVNDSLKKLDRIKEK   97 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p---~d~~~~~---va-~nnl~~l~~~~---------~~~~a~~~l~~~~~~   97 (467)
                      .+.--|.+..++++++|..+++++...-.   .|..+.+   +. ....+.+....         +..+.++.++.....
T Consensus        15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~   94 (378)
T 3q15_A           15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK   94 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence            45556778999999999999998855421   3444331   11 11111111111         122444444332111


Q ss_pred             hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---C---CchHHHHHHHHHHhcCChhHH
Q 012265           98 DMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---D---SVMPLLLQAAVLVRENKAGKA  171 (467)
Q Consensus        98 ~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~---~~~~~ll~a~l~~~~~~~~~A  171 (467)
                                    .+....--.++..+..++..|++++|+..+++++...+   +   ...++...|.++...|++++|
T Consensus        95 --------------~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A  160 (378)
T 3q15_A           95 --------------LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS  160 (378)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             --------------CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence                          01112223567889999999999999999998876542   2   223456778889999999999


Q ss_pred             HHHHHHHHHhCCCc------HHHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---ChhHHHHHHHHHHHcCCHHH
Q 012265          172 EELLGQFAEKLPDK------SKIILLARAQVAAAANHPFIAAESLAKIPDIQ----H---MPATVATLVALKERAGDIDG  238 (467)
Q Consensus       172 ~~~l~~~l~~~P~~------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~---~p~~~~~l~~ly~~~g~~~~  238 (467)
                      +..++++++..+..      ...+...+|.+|...|++++|+..|++++++.    .   ...++..++.+|..+|++++
T Consensus       161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~  240 (378)
T 3q15_A          161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM  240 (378)
T ss_dssp             HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            99999999865431      12345789999999999999999999998642    1   12346679999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C--H-HHHHHHHHHhcc-CC---
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S--I-EALVGLVTTSAH-VD---  308 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d--~-~ala~Lv~a~~~-~d---  308 (467)
                      |+..|++++...+...  ++.....+..+|.++...|++++|...|++++...+   +  . ..+..+...+.. .+   
T Consensus       241 A~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~  318 (378)
T 3q15_A          241 AVEHFQKAAKVSREKV--PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK  318 (378)
T ss_dssp             HHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred             HHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999998775432  233355677799999999999999999999999853   2  2 223333333433 33   


Q ss_pred             hhHHHHHHhc
Q 012265          309 VDKAESYEKR  318 (467)
Q Consensus       309 ~~kA~~l~~~  318 (467)
                      ..+|..+.+.
T Consensus       319 ~~~al~~~~~  328 (378)
T 3q15_A          319 IHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5566666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.41  E-value=6.7e-12  Score=122.06  Aligned_cols=187  Identities=11%  Similarity=0.062  Sum_probs=142.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--c---HHHHHHHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--K---SKIILLAR  193 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~---~~~~~l~L  193 (467)
                      +.++...|++++|...+.+++..++..      ..++...+.++...|++++|+..|+++++.++.  +   ...++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            567778899999999999887765432      123445667788899999999999999987542  1   12344788


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE  266 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~  266 (467)
                      |.+|.. |++++|+..|++++++..       ...++..++.+|..+|++++|+..|++++..++.... .......+..
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~  200 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIA  200 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHH
Confidence            999988 999999999999986432       1345678899999999999999999999998765321 1222335666


Q ss_pred             HHHHHHHCCChhHHHHHHHHHHHhcCC------HHHHHHHHHHhccCChhHHHH
Q 012265          267 AASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKAES  314 (467)
Q Consensus       267 la~~~l~~g~~~~A~~~le~ll~~~pd------~~ala~Lv~a~~~~d~~kA~~  314 (467)
                      +|.+++..|++++|...|++++ .+|+      ...+..++.++...|.+.+..
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~  253 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAYDEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence            7899999999999999999999 8874      134566777777777766655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=1.5e-10  Score=121.06  Aligned_cols=193  Identities=11%  Similarity=0.072  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHH-------cCCHH-------HHHHHHHhccc-cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265          118 EAIYANRVLLLLH-------ANKMD-------QARELVAALPD-MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL  182 (467)
Q Consensus       118 ~~l~~n~all~l~-------~~~~~-------~A~~~~~~l~~-~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~  182 (467)
                      ..++++.+.++..       .|+++       +|+..+++++. ..|++..+++..+.++...|++++|..+|+++++..
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~  351 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence            4577788888776       68877       99999999997 799999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265          183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDIDGAAAVLDSAIKWWLNAMTEDNKL  260 (467)
Q Consensus       183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~  260 (467)
                      |.+...+++.++.++.++|++++|+.+|+++++..+ ...++...+.+ +...|++++|..+|++++...+    ++   
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p----~~---  424 (530)
T 2ooe_A          352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DI---  424 (530)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT----TC---
T ss_pred             ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC----CC---
Confidence            988543558889999999999999999999997654 33443333333 4468999999999999998642    22   


Q ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-----HHHHHHHHH-HhccCChhHHHHHHh
Q 012265          261 SVIMQEAASFKLRHGREEDASHLFEELVKTHGS-----IEALVGLVT-TSAHVDVDKAESYEK  317 (467)
Q Consensus       261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-----~~ala~Lv~-a~~~~d~~kA~~l~~  317 (467)
                      ..+|..++.++...|+.++|..+|++++...|.     ...+..++. ...+.|.+.+..+..
T Consensus       425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~  487 (530)
T 2ooe_A          425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  487 (530)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            245777899999999999999999999997542     224444333 335677777766554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.39  E-value=4.9e-12  Score=122.11  Aligned_cols=190  Identities=9%  Similarity=0.028  Sum_probs=139.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHHHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLAR  193 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l~L  193 (467)
                      +.++...|++++|...+.+++..++..      ..++...|.++...|++++|+..|++++..+|+.     ...++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            557778999999999999888765321      2345567888899999999999999999887642     11244788


Q ss_pred             HHHHHHc-CChHHHHHHHhccccCCC---C----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          194 AQVAAAA-NHPFIAAESLAKIPDIQH---M----PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       194 aql~~~~-g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      |.+|..+ |++++|+..|++++++.+   .    ..++..++.+|..+|++++|+..|++++...+............+.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            9999997 999999999999986532   1    2356788999999999999999999999753211100001223566


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhcCCH------HHHHHHHHHhccCChhHHHH
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTHGSI------EALVGLVTTSAHVDVDKAES  314 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~------~ala~Lv~a~~~~d~~kA~~  314 (467)
                      .+|.++...|++++|+..|++++..+|+.      ..+..++.++...|.+....
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~  258 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE  258 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence            78999999999999999999999988752      23556666776556444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=2.5e-11  Score=127.06  Aligned_cols=241  Identities=10%  Similarity=0.042  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHhhhhhc----cCCCChh-------HHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           48 QEAFGAYTDIIKRNLADESSFAVAVNNLVAL----KGPKDVN-------DSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        48 ~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l----~~~~~~~-------~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      ..|..+|++++...|.++.+++..+.-+...    ...++..       .+...+.+....              +. +.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--------------~~-p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------LL-KK  319 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--------------TC-SS
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--------------hC-cc
Confidence            4788999999999999988876544333221    0112322       444444443220              00 12


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc-hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~-~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ...++++.+.++...|++++|+.++++++..+|.+. .+++..+.++.+.|++++|..+|++++...|..... .+..+.
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~-~~~~a~  398 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAAL  398 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH-HHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH-HHHHHH
Confidence            345788999999999999999999999999999885 477777888888999999999999999988876443 244455


Q ss_pred             H-HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHH
Q 012265          196 V-AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN-KLSVIMQEAASFKL  272 (467)
Q Consensus       196 l-~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~-~~~~ll~~la~~~l  272 (467)
                      + +...|++++|..+|+++++..+ ++.++..++.++...|+.+.|..+|++++...    +.++ ....+|...+.+..
T Consensus       399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~----~~~~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----SLPPEKSGEIWARFLAFES  474 (530)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC----CSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHH
Confidence            5 3469999999999999987655 78889999999999999999999999998741    1122 23446766788888


Q ss_pred             HCCChhHHHHHHHHHHHhcCC---HHHHHHHHHHhccCC
Q 012265          273 RHGREEDASHLFEELVKTHGS---IEALVGLVTTSAHVD  308 (467)
Q Consensus       273 ~~g~~~~A~~~le~ll~~~pd---~~ala~Lv~a~~~~d  308 (467)
                      ..|+.+.+..++.++++..|+   ......++.-|...|
T Consensus       475 ~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~~~~  513 (530)
T 2ooe_A          475 NIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD  513 (530)
T ss_dssp             HSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTCBTT
T ss_pred             HcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHHHhcc
Confidence            999999999999999998874   122344444444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.34  E-value=1.1e-11  Score=104.37  Aligned_cols=113  Identities=10%  Similarity=-0.064  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      +....+.|++..++..|++++|+..|++++..+|++..++...|.++...|++++|+..++++++.+|++... ++.+|.
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a-~~~lg~   89 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG-YIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Confidence            4455778899999999999999999999999999999998899999999999999999999999999998875 488999


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL  229 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l  229 (467)
                      +|...|++++|+..|++++++++ ++.+...|+.+
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999988765 56665555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.33  E-value=7.5e-11  Score=121.26  Aligned_cols=181  Identities=18%  Similarity=0.085  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHcCCHHHHH----HHHHhccccCCCCchHHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQAR----ELVAALPDMFPDSVMPLLLQAAVLVREN---KAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~----~~~~~l~~~~P~~~~~~ll~a~l~~~~~---~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                      .+++.+.++...+.++++.    ..+..+...+|   .+....+.++...|   ++++|+..|+++++..|.....+ +.
T Consensus       143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~-~~  218 (452)
T 3e4b_A          143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV-DS  218 (452)
T ss_dssp             HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence            5667777777777544433    33444444344   36677777777777   77888888888888877765432 66


Q ss_pred             HHHHHHHc----CChHHHHHHHhccccCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265          193 RAQVAAAA----NHPFIAAESLAKIPDIQHMPATVATLVAL-K--ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ  265 (467)
Q Consensus       193 Laql~~~~----g~~~~A~~~L~~~~~~~~~p~~~~~l~~l-y--~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~  265 (467)
                      |+.+|...    +++++|+.+|+++.  ..++.....|+.+ |  ...+++++|+.+|++++..      +   ....+.
T Consensus       219 Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g---~~~A~~  287 (452)
T 3e4b_A          219 VARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------D---QPRAEL  287 (452)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------T---CHHHHH
T ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------C---CHHHHH
Confidence            77777544    67888888888877  4456666677776 4  4577888888888877642      1   122345


Q ss_pred             HHHHHHHHCC-----ChhHHHHHHHHHHHhcCCHHHHHHHHHHhccC-----ChhHHHHHHhc
Q 012265          266 EAASFKLRHG-----REEDASHLFEELVKTHGSIEALVGLVTTSAHV-----DVDKAESYEKR  318 (467)
Q Consensus       266 ~la~~~l~~g-----~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~-----d~~kA~~l~~~  318 (467)
                      .+|.+|. .|     ++++|+.+|+++.  ..+..+...|...|...     |.++|..+..+
T Consensus       288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~  347 (452)
T 3e4b_A          288 LLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT  347 (452)
T ss_dssp             HHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            5677776 45     7788888888877  44566666666666443     66777666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.33  E-value=9.6e-12  Score=116.98  Aligned_cols=158  Identities=19%  Similarity=0.198  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHhccc--------cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------CCcHHHHHHHHHH
Q 012265          132 NKMDQARELVAALPD--------MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--------PDKSKIILLARAQ  195 (467)
Q Consensus       132 ~~~~~A~~~~~~l~~--------~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--------P~~~~~~~l~Laq  195 (467)
                      |++++|+..+++++.        .+|....++...|.++...|++++|+..+++++...        |.... ++..+|.
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~   93 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-TLNNLAV   93 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-HHHHHHH
Confidence            444445544444433        235556677788999999999999999999999773        43333 4588999


Q ss_pred             HHHHcCChHHHHHHHhccccC------C--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH
Q 012265          196 VAAAANHPFIAAESLAKIPDI------Q--H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQ  265 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~------~--~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~  265 (467)
                      +|...|++++|+..|++++++      .  + ...++..++.+|...|++++|+.+|++++..+..... +++....++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999864      1  1 2345678899999999999999999999988755432 2344556777


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          266 EAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      .+|.++...|++++|..+|++++..
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8999999999999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.33  E-value=2.8e-12  Score=111.74  Aligned_cols=110  Identities=12%  Similarity=-0.031  Sum_probs=97.6

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..+.+++..+|++..+++..|.++...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI-MGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            446777888999999888899999999999999999999999999998764 8899999999999999999999988776


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                       ++.++..++.+|..+|++++|+..|++++..
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             7888889999999999999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=8.5e-11  Score=97.13  Aligned_cols=131  Identities=11%  Similarity=0.054  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      +...+.++...|++++|+..+++++..+|++... ++.++.++...|++++|+..|++++...+ .+.++..++.+|...
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            3445556666667777777777766666666543 35666677777777777777776665433 344555666777777


Q ss_pred             CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      |++++|+.+|++++...    +.+   ...+..+|.++...|++++|...|++++..+|+
T Consensus        83 ~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD----PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhC----CCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            77777777777766542    111   123445677777778888888888777776653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=5e-11  Score=98.55  Aligned_cols=129  Identities=15%  Similarity=0.056  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      ++++.+.+++..|++++|...++.++..+|++...+...+.++...|++++|+..+++++...|++... ++.++.++..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHH
Confidence            467789999999999999999999999999998888888999999999999999999999999998765 4889999999


Q ss_pred             cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .|++++|+..|++++...+ .+.++..++.+|...|++++|...|++++..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            9999999999999987654 5677788999999999999999999998864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.29  E-value=2.1e-11  Score=102.51  Aligned_cols=106  Identities=9%  Similarity=0.012  Sum_probs=95.6

Q ss_pred             hccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265          143 ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA  221 (467)
Q Consensus       143 ~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~  221 (467)
                      ++...+|+....+...|..+.+.|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++++++ ++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            3445788888888899999999999999999999999999999875 48999999999999999999999998875 677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .+..++.+|..+|++++|+..|++++..
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8889999999999999999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.28  E-value=4.4e-11  Score=126.28  Aligned_cols=153  Identities=10%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 012265           44 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN  123 (467)
Q Consensus        44 ~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n  123 (467)
                      .|++++|+..|++++..+|.+..++...+..+...   ++..++...+.+.....++                ...++++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~----------------~~~~~~~   62 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM---GDTTAGEMAVQRGLALHPG----------------HPEAVAR   62 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTSTT----------------CHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC----------------CHHHHHH
Confidence            57888888888888888776665544333322222   2233333333322211111                1224455


Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc---
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA---  200 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~---  200 (467)
                      .+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..|+++++.+|++... +..++.+|...   
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~  141 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI-TAQLLNWRRRLCDW  141 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhhcc
Confidence            55555555555555555555555555555555555555555555555555555555555555443 25555555555   


Q ss_pred             CChHHHHHHHhccccC
Q 012265          201 NHPFIAAESLAKIPDI  216 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~  216 (467)
                      |++++|+..|+++++.
T Consensus       142 g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          142 RALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhc
Confidence            5555555555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.28  E-value=2.3e-11  Score=105.27  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=93.7

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..+++++..+|++..+++..|.++...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-LGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            346667778888888888888888889999999999999999999887754 8889999999999999999999887765


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                       ++.++..++.+|..+|++++|+..|++++...
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence             67788888999999999999999999988764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.28  E-value=3e-11  Score=115.46  Aligned_cols=206  Identities=14%  Similarity=0.034  Sum_probs=148.5

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhh-------hhhhhhhhHHHHHH
Q 012265           35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLD-------RIKEKDMQNFQLAR  106 (467)
Q Consensus        35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~-------~~~~~~~~~~~~~~  106 (467)
                      +-.|.-+ .-++.++|...|.+++..+|+....++    ++++.++.. .+...+.+..       +..+..|......-
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~----g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~   85 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWI----GRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI   85 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHH----HHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHH----hHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence            4455555 589999999999999999999888775    222222211 1111111111       11111111111000


Q ss_pred             H-------hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          107 V-------LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       107 ~-------l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                      .       +...+  .++..+.+..+.++...|++++|.+.|+.+....|++. +.+..+.++.+.++|++|+..|+...
T Consensus        86 ~~~g~y~~~~~~v--~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A           86 AIGGLYGDITYPV--TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             ECCTTTCCCEEEC--SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             ccCCccccccccc--CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence            0       11122  24567888899999999999999999999999999888 88899999999999999999998775


Q ss_pred             HhCCCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          180 EKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       180 ~~~P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      .. |+.  ...+++.|+.++...|++++|+..|++++....    .+.....++.++.++|+.++|..+|++++..
T Consensus       163 ~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          163 KW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             GC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            53 322  233579999999999999999999999975432    3446778999999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=1.6e-10  Score=103.63  Aligned_cols=161  Identities=12%  Similarity=0.102  Sum_probs=121.6

Q ss_pred             HHHcCCHHHHHHHHHhccccCC-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHc
Q 012265          128 LLHANKMDQARELVAALPDMFP-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEK------LPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       128 ~l~~~~~~~A~~~~~~l~~~~P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~------~P~~~~~~~l~Laql~~~~  200 (467)
                      ++..|++++|.+.++.+.. +| ....++...+.++...|++++|+..+++++..      .|... .++..+|.+|...
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~l~~~~~~~   79 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH-RALHQVGMVERMA   79 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHc
Confidence            3567899999995544443 44 44556778888999999999999999999883      22223 3458899999999


Q ss_pred             CChHHHHHHHhccccC---CC-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPDI---QH-MP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL  272 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~---~~-~p----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l  272 (467)
                      |++++|+..+++++++   .. .+    .++..++.+|...|++++|+..+++++...+... +.......+..+|.++.
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~  158 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQ  158 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            9999999999999764   11 22    3466789999999999999999999998765432 22223344567899999


Q ss_pred             HCCChhHHHHHHHHHHHhc
Q 012265          273 RHGREEDASHLFEELVKTH  291 (467)
Q Consensus       273 ~~g~~~~A~~~le~ll~~~  291 (467)
                      ..|++++|...|++++...
T Consensus       159 ~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          159 QEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=1.5e-10  Score=100.18  Aligned_cols=133  Identities=11%  Similarity=-0.056  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+.+++..+|++... ++.+|.+|
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~a~~~   91 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG-YYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH-HHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999875 48999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-ChhHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPATV--ATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~--~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ...|++++|+..|+++++..+ ++.++  ..++..+...|++++|+..+.++...+.
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence            999999999999999987654 55555  3345558888999999999998876653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.25  E-value=6.5e-11  Score=103.05  Aligned_cols=105  Identities=10%  Similarity=-0.013  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      +....+++.+.+++..|++++|+..|++++..+|++..++...|.++...|++++|+..|++++..+|+++.. ++.+|.
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~-~~~lg~  112 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP-VFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH-HHHHHH
Confidence            4456789999999999999999999999999999999999999999999999999999999999999999876 599999


Q ss_pred             HHHHcCChHHHHHHHhccccCCCChh
Q 012265          196 VAAAANHPFIAAESLAKIPDIQHMPA  221 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~~p~  221 (467)
                      +|...|++++|+..|++++.+.+++.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999998766554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=6.4e-11  Score=101.23  Aligned_cols=112  Identities=15%  Similarity=0.044  Sum_probs=95.5

Q ss_pred             HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      ..+++++..+|++...++..|..+...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            467788888898888888888889999999999999999999999988754 8899999999999999999999988765


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                       ++.++..++.+|..+|++++|+..|++++...+
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence             777888899999999999999999999988754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.24  E-value=5.6e-10  Score=107.43  Aligned_cols=170  Identities=8%  Similarity=-0.041  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH------HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMP------LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----II  189 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~------~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~  189 (467)
                      ..+.+..++..|++++|...+++++...+.+...      ....+.++...+++++|+..+++++...+....     .+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3456778899999999999999998877765542      113566667788999999999999986443211     13


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhcccc----C-CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPD----I-QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS  261 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~----~-~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~  261 (467)
                      ...+|.+|...|++++|+..|+++++    . ..   ...++..++.+|..+|++++|+.++++++...+... ......
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~~~~  236 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALIG  236 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCTTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHHHHH
Confidence            57899999999999999999999983    2 11   223567899999999999999999999998875532 223445


Q ss_pred             HHHHHHHHHHHHCCC-hhHHHHHHHHHHHhc
Q 012265          262 VIMQEAASFKLRHGR-EEDASHLFEELVKTH  291 (467)
Q Consensus       262 ~ll~~la~~~l~~g~-~~~A~~~le~ll~~~  291 (467)
                      .++..+|.++...|+ +++|...|++++...
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            678889999999995 699999999999754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.23  E-value=7.7e-10  Score=106.43  Aligned_cols=171  Identities=9%  Similarity=-0.040  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch------HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKI  188 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~  188 (467)
                      ...+.+..++..|++++|.+.+...+...|....      .....+.++...|++++|+..+++++...+..     ...
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3456788899999999999999988887776432      23345666778899999999999999765432     122


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccC---CC-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDI---QH-MP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL  260 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~-~p----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~  260 (467)
                      ++..+|.+|..+|++++|+..|++++++   .+ .+    .++..++.+|..+|++++|+.++++++...... ......
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence            4578999999999999999999999842   11 22    467789999999999999999999999876432 222334


Q ss_pred             HHHHHHHHHHHHHCCChhHH-HHHHHHHHHhc
Q 012265          261 SVIMQEAASFKLRHGREEDA-SHLFEELVKTH  291 (467)
Q Consensus       261 ~~ll~~la~~~l~~g~~~~A-~~~le~ll~~~  291 (467)
                      ..++..+|.++...|++++| ...|++++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            56677899999999999999 88899998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=4.5e-10  Score=108.65  Aligned_cols=187  Identities=16%  Similarity=0.117  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCC--CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CcHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFP--DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP-----DKSKIILLA  192 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P--~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P-----~~~~~~~l~  192 (467)
                      ..+..+.++...|++++|.+++.+.+...|  ++..+..+.+.++++.|+.+.|.+.++++.+.+|     ++...+.+.
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            346788999999999999999999988887  7888899999999999999999999999999998     344434344


Q ss_pred             HHHHHHHcC--ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC---CchHHHHHHHH
Q 012265          193 RAQVAAAAN--HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE---DNKLSVIMQEA  267 (467)
Q Consensus       193 Laql~~~~g--~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~---~~~~~~ll~~l  267 (467)
                      -+.+.+.+|  ++.+|..+|+.+.+..+.......|..+++++|++++|...|+.++..++.....   ++....++..+
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence            455577677  9999999999987644331122223338999999999999999877665431000   12223456566


Q ss_pred             HHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265          268 ASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVD  308 (467)
Q Consensus       268 a~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d  308 (467)
                      +.+....|+  +|.++++++.+.+|+...+..+..-...||
T Consensus       262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd  300 (310)
T 3mv2_B          262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFD  300 (310)
T ss_dssp             HHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            777777887  899999999999998655555544434443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.22  E-value=9.4e-10  Score=106.93  Aligned_cols=231  Identities=11%  Similarity=0.027  Sum_probs=171.7

Q ss_pred             HHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHH
Q 012265           41 QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI  120 (467)
Q Consensus        41 ~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l  120 (467)
                      .......++|+.++..+|..+|++..+...-..-+..+.. ....+++..+..+....|.+                -.+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-~~~~eeL~~~~~~L~~nPk~----------------y~a  105 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN-RNLYDELDWCEEIALDNEKN----------------YQI  105 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHHHHCTTC----------------CHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHCccc----------------HHH
Confidence            3445556799999999999999998887644333333321 35566666665544333221                135


Q ss_pred             HHHHHHHH----HHc---CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh--HHHHHHHHHHHhCCCcHHHHHH
Q 012265          121 YANRVLLL----LHA---NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG--KAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       121 ~~n~all~----l~~---~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~--~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                      ..++..++    ...   +.++++...++.++..+|.+..++...+-++...+.++  +++..+.++++.+|.+..++ .
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW-~  184 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW-S  184 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH-H
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH-H
Confidence            55666655    444   78999999999999999999999999998888899998  99999999999999998765 6


Q ss_pred             HHHHHHHHcCC------hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhccCCchHHHH
Q 012265          192 ARAQVAAAANH------PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDG-AAAVLDSAIKWWLNAMTEDNKLSVI  263 (467)
Q Consensus       192 ~Laql~~~~g~------~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~-A~~~l~~al~~~~~~~~~~~~~~~l  263 (467)
                      ..+.++...|+      +++++..+.+++..++ +...+..+..++...|+..+ +..++.+++... .   .+.....+
T Consensus       185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~---~~~~s~~a  260 (306)
T 3dra_A          185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-K---DQVTSSFA  260 (306)
T ss_dssp             HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-G---TEESCHHH
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-C---CCCCCHHH
Confidence            77888888787      9999999999998765 77788889999999998655 444555544321 0   01112224


Q ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHH-hcCC
Q 012265          264 MQEAASFKLRHGREEDASHLFEELVK-THGS  293 (467)
Q Consensus       264 l~~la~~~l~~g~~~~A~~~le~ll~-~~pd  293 (467)
                      +..++.++...|+.++|+++|+.+.. .+|-
T Consensus       261 l~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi  291 (306)
T 3dra_A          261 LETLAKIYTQQKKYNESRTVYDLLKSKYNPI  291 (306)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence            55579999999999999999999997 5675

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.21  E-value=2.4e-10  Score=95.97  Aligned_cols=110  Identities=9%  Similarity=-0.031  Sum_probs=85.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      ..||..+..+|+|++|+..|++++++++ ++.++..++.+|..+|++++|+..+++++...+........+..++..+|.
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~   91 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN   91 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            5678888888888888888888887665 566777788888888888888888888888765543322334446777899


Q ss_pred             HHHHCCChhHHHHHHHHHHHhcCCHHHHHHH
Q 012265          270 FKLRHGREEDASHLFEELVKTHGSIEALVGL  300 (467)
Q Consensus       270 ~~l~~g~~~~A~~~le~ll~~~pd~~ala~L  300 (467)
                      ++...|++++|+..|++++..+|+.+.+..|
T Consensus        92 ~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           92 AFQKQNDLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence            9999999999999999999999887655443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.20  E-value=1e-10  Score=111.80  Aligned_cols=190  Identities=16%  Similarity=0.045  Sum_probs=143.2

Q ss_pred             CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHhccccCCCCc-
Q 012265           81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR-------VLLLLHANKMDQARELVAALPDMFPDSV-  152 (467)
Q Consensus        81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~-------all~l~~~~~~~A~~~~~~l~~~~P~~~-  152 (467)
                      ..+...+...|.++...+|.                ....++++       ..++...++..++.-.+...+...|+.. 
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~----------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~   82 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDES----------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN   82 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred             CCCHHHHHHHHHHHHHhChh----------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence            35566666666665443322                12345566       5666666666777777776666555432 


Q ss_pred             --------------------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhc
Q 012265          153 --------------------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK  212 (467)
Q Consensus       153 --------------------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~  212 (467)
                                          .+.+..|.++...|++++|..+|..++...|++.  +++.++.++++.|++++|+..|+.
T Consensus        83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~  160 (282)
T 4f3v_A           83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL--VAWMKAVVYGAAERWTDVIDQVKS  160 (282)
T ss_dssp             CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH--HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence                                2345578889999999999999999999999886  459999999999999999999998


Q ss_pred             cccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265          213 IPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELV  288 (467)
Q Consensus       213 ~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll  288 (467)
                      +.....   ...+...++.++..+|++++|+..|++++.     .+.++. ....+...|.++..+|+.++|..+|++++
T Consensus       161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            876431   124678899999999999999999999873     111122 34456668999999999999999999999


Q ss_pred             HhcCC
Q 012265          289 KTHGS  293 (467)
Q Consensus       289 ~~~pd  293 (467)
                      ..+|+
T Consensus       236 a~~P~  240 (282)
T 4f3v_A          236 TTHPE  240 (282)
T ss_dssp             HHSCC
T ss_pred             hcCCc
Confidence            99998

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.20  E-value=1.9e-09  Score=103.66  Aligned_cols=174  Identities=9%  Similarity=-0.069  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .....++..+..+|++++|...|.+++...+.......                                          
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~------------------------------------------  113 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ------------------------------------------  113 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH------------------------------------------
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH------------------------------------------
Confidence            34567889999999999999999988876553211100                                          


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHH---HhC
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFA---EKL  182 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l---~~~  182 (467)
                           ....+++.+.++...|++++|...+++++...+..      ..++...|.++...|++++|+..+++++   ...
T Consensus       114 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~  188 (293)
T 2qfc_A          114 -----FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL  188 (293)
T ss_dssp             -----HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             -----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence                 01134556788888999999999999887655433      2245577888999999999999999998   566


Q ss_pred             CCcHH---HHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Q 012265          183 PDKSK---IILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGA-AAVLDSAIKWWL  251 (467)
Q Consensus       183 P~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~~  251 (467)
                      |++..   .+++.+|.+|..+|++++|+..+++++++..       ...++..++.+|..+|++++| ...|++|+..++
T Consensus       189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            66431   2458899999999999999999999975421       144677899999999999999 788999988765


Q ss_pred             H
Q 012265          252 N  252 (467)
Q Consensus       252 ~  252 (467)
                      .
T Consensus       269 ~  269 (293)
T 2qfc_A          269 I  269 (293)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.18  E-value=1.5e-10  Score=102.33  Aligned_cols=123  Identities=11%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCH--HH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDI--DG  238 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~--~~  238 (467)
                      ...|++++|+..+++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+ ++.++..++.+ |...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            356788888888888888888887654 7888888888888888888888876654 56677777877 7788887  88


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      |+..|++++...    +.   ...++..+|.++...|++++|...|++++..+|+
T Consensus       100 A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          100 TRAMIDKALALD----SN---EITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHhC----CC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            888888888752    11   1234566788888888888888888888888875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=2e-10  Score=95.49  Aligned_cols=98  Identities=14%  Similarity=0.012  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+..++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~   83 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA-YIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHH
Confidence            4567888888999999999999999998899988888888888889999999999999999999988765 488899999


Q ss_pred             HcCChHHHHHHHhccccCC
Q 012265          199 AANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~  217 (467)
                      ..|++++|+..|++++++.
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            9999999999998888655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.18  E-value=3.8e-10  Score=92.89  Aligned_cols=119  Identities=10%  Similarity=-0.009  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ....++..+.+++..|+++.|...+++++..+|++..++...|.++...|++++|+..+.+++..+|++... ++.+|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA-YGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH-HHHHHHH
Confidence            345678899999999999999999999999999999888899999999999999999999999999998765 4899999


Q ss_pred             HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265          197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI  236 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~  236 (467)
                      |...|++++|+..|++++...+ ++.++..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999987665 667788888999888875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=7.6e-10  Score=100.34  Aligned_cols=127  Identities=10%  Similarity=0.003  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.+++..|++++|+..+++++  .| +..++...|.++...|++++|+..|++++..+|++... ++.+|.+|.
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~lg~~~~   82 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA-YFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH-HHHHHHHHH
Confidence            357889999999999999999999986  33 56678889999999999999999999999999999875 489999999


Q ss_pred             HcCChHHHHHHHhccccCCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          199 AANHPFIAAESLAKIPDIQH-MP----------------ATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p----------------~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ..|++++|+..|+++++..+ ++                .++..++.+|..+|++++|+..|++++..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999999999987432 22                67888999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.18  E-value=3.4e-10  Score=111.69  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---------------chHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDS---------------VMPLLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---------------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      ...++++.+.+++..|++++|+..+++++..+|++               ..+++..|.++...|++++|+..|+++++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44678899999999999999999999999999998               477888999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA-AAVLDSAIKWW  250 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~  250 (467)
                      +|++...+ +.+|.+|...|++++|+..|++++++.+ ++.++..++.++..+|++++| ...+.+++..+
T Consensus       226 ~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          226 DSNNEKGL-SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998764 9999999999999999999999998775 677888999999999999988 45667666544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.18  E-value=2.6e-11  Score=119.68  Aligned_cols=151  Identities=13%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---------------HHHHHHHHHHH
Q 012265          132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---------------SKIILLARAQV  196 (467)
Q Consensus       132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---------------~~~~~l~Laql  196 (467)
                      +.+++|...++......|++..++...|.++...|++++|+..|++++...|++               .. +++.+|.+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~-~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA-SHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH-HHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH-HHHHHHHH
Confidence            345556666666666677777888889999999999999999999999999998               34 45899999


Q ss_pred             HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      |...|++++|+..|++++++.+ ++.++..++.+|..+|++++|+..|++++...    |   ....++..++.++...|
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P---~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----P---NNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----S---SCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----C---CCHHHHHHHHHHHHHHH
Confidence            9999999999999999998765 67788899999999999999999999999762    2   22345667899999999


Q ss_pred             ChhHH-HHHHHHHHHh
Q 012265          276 REEDA-SHLFEELVKT  290 (467)
Q Consensus       276 ~~~~A-~~~le~ll~~  290 (467)
                      ++++| ..+|+.++..
T Consensus       279 ~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          279 RQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            99988 5677777754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.17  E-value=4e-09  Score=102.52  Aligned_cols=225  Identities=10%  Similarity=0.040  Sum_probs=170.5

Q ss_pred             HHHHHhhhhhcCCCCChhh---------HHhhhhhHHHHHHHHHHHhC--ChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265            7 IFVRIGQETLTDDNFAEDD---------IEIELAPIAVQLAYVQQLLG--NTQEAFGAYTDIIKRNLADESSFAVAVNNL   75 (467)
Q Consensus         7 ~A~~~~~~~l~~~~~~~ee---------~~~El~~i~~qlA~v~~~~G--~~~eA~~~y~~~l~~~p~d~~~~~va~nnl   75 (467)
                      .+...++..+...+++++-         +.++...+|...+.++...|  ++++++..+..++..+|.+..+..--..-+
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII  113 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            3344444444445554432         44567788999999999999  999999999999999999888765221111


Q ss_pred             ----hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHhccccCC
Q 012265           76 ----VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD--QARELVAALPDMFP  149 (467)
Q Consensus        76 ----~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~--~A~~~~~~l~~~~P  149 (467)
                          ..+....+..+.+..+..+...+|.                .-.+..+++.+.-..|.++  ++.+.+++++..+|
T Consensus       114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A          114 GQIMELNNNDFDPYREFDILEAMLSSDPK----------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHTTTCCCTHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHhccccCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence                1121113455555555544333322                1246788888888889988  99999999999999


Q ss_pred             CCchHHHHHHHHHHhcCC------hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH-HHHHHhccccCC----C
Q 012265          150 DSVMPLLLQAAVLVRENK------AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI-AAESLAKIPDIQ----H  218 (467)
Q Consensus       150 ~~~~~~ll~a~l~~~~~~------~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~-A~~~L~~~~~~~----~  218 (467)
                      .+..++...+.++...+.      +++++..+.+++..+|++..++ ..+..++...|+..+ .....+++++++    .
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW-~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW-NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT  256 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH-HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence            999999998888887777      8999999999999999998765 778889999998555 555777777654    2


Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          219 MPATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      ++.++..++.+|.+.|+.++|+.+++.+..
T Consensus       257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          257 SSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            677888999999999999999999999886

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.17  E-value=3.3e-10  Score=93.98  Aligned_cols=117  Identities=12%  Similarity=-0.051  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG-YTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH-HHHHHHHH
Confidence            35678899999999999999999999999999999988999999999999999999999999999998775 48999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD  235 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~  235 (467)
                      ...|++++|+..|++++...+ ++.++..++.+|..+|+
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999987654 56677788888877664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=1.8e-10  Score=98.33  Aligned_cols=104  Identities=13%  Similarity=-0.063  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV  196 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql  196 (467)
                      ....+++.+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++..+|++... ++.+|.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF-PFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999999999875 4899999


Q ss_pred             HHHcCChHHHHHHHhccccCCC-Chh
Q 012265          197 AAAANHPFIAAESLAKIPDIQH-MPA  221 (467)
Q Consensus       197 ~~~~g~~~~A~~~L~~~~~~~~-~p~  221 (467)
                      |...|++++|+..|++++++.+ +|.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999987653 443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.15  E-value=2.1e-10  Score=99.18  Aligned_cols=106  Identities=10%  Similarity=-0.080  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      .....+++.+.+++..|++++|+..++.++..+|++..++...|.++...|++++|+..|++++..+|++... ++.+|.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~   97 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF-PFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-HHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH-HHHHHH
Confidence            3445788999999999999999999999999999999999999999999999999999999999999999875 489999


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhH
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPAT  222 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~  222 (467)
                      +|...|++++|+..|++++++.+ +|..
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            99999999999999999987654 4443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.14  E-value=1.5e-10  Score=102.19  Aligned_cols=120  Identities=9%  Similarity=0.005  Sum_probs=105.8

Q ss_pred             HHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHcCCh--HH
Q 012265          129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANHP--FI  205 (467)
Q Consensus       129 l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql-~~~~g~~--~~  205 (467)
                      +..|++++|...++.++..+|++..++...|.++...|++++|+..|++++..+|++... ++.+|.+ |...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL-YAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH-HHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhcCCcchHH
Confidence            456789999999999999999999999999999999999999999999999999999775 4889999 8899999  99


Q ss_pred             HHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          206 AAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       206 A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      |+..|++++...+ ++.++..++.+|...|++++|+..|++++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999998765 6778889999999999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.13  E-value=1.5e-09  Score=93.80  Aligned_cols=131  Identities=13%  Similarity=-0.001  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265          154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER  232 (467)
Q Consensus       154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~  232 (467)
                      .+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..++.+|..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45677888899999999999999999999998775 48999999999999999999999987665 67788899999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          233 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       233 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      +|++++|+..|++++...    +.+... ......+..+...|++++|+..|+++...
T Consensus        94 ~~~~~~A~~~~~~a~~~~----p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVK----PHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHS----TTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC----CCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999999999998763    222222 12234566688889999999999887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.12  E-value=5.4e-09  Score=107.30  Aligned_cols=248  Identities=10%  Similarity=-0.008  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHHhC----ChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265           31 APIAVQLAYVQQLLG----NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR  106 (467)
Q Consensus        31 ~~i~~qlA~v~~~~G----~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  106 (467)
                      ...++.+|.+|...|    ..++|..+++.+...+|.   ....++.-+...+...+...++..+.+.....+.      
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------  211 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------  211 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------
Confidence            456677888888888    444455556555555443   3332222222222122556666666544322110      


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHhccccCCCCchHHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 012265          107 VLDLRLSPKQREAIYANRVLLLLHA----NKMDQARELVAALPDMFPDSVMPLLLQAAV-L--VRENKAGKAEELLGQFA  179 (467)
Q Consensus       107 ~l~~kL~~~q~~~l~~n~all~l~~----~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l-~--~~~~~~~~A~~~l~~~l  179 (467)
                                ....+++.+.++...    +++++|...++++.   |++..+.+..+.+ +  ...+++++|+..|++++
T Consensus       212 ----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          212 ----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             ----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence                      112347888888665    68999999999987   8999999988887 4  46899999999999998


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcC-----ChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 012265          180 EKLPDKSKIILLARAQVAAAAN-----HPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g-----~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~  250 (467)
                      +..  +... .+.||.+|. .|     ++++|+.+|+++.  ..++.....|+.+|..    ..++++|+.+|+++... 
T Consensus       279 ~~g--~~~A-~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-  351 (452)
T 3e4b_A          279 AAD--QPRA-ELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-  351 (452)
T ss_dssp             HTT--CHHH-HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred             HCC--CHHH-HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence            754  5554 489999998 66     9999999999999  5577788889999877    34999999999998752 


Q ss_pred             HHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCC---hhHHHHHH
Q 012265          251 LNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTHGSIEALVGLVTTSAHVD---VDKAESYE  316 (467)
Q Consensus       251 ~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d---~~kA~~l~  316 (467)
                           ++.   .....+|.+|..    ..++.+|..+|+.+.... +..+...+........   ..+|..+.
T Consensus       352 -----g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~  415 (452)
T 3e4b_A          352 -----GQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLV  415 (452)
T ss_dssp             -----TCT---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             -----ChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                 122   234557888865    358999999999999765 3334333333333333   34454444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.12  E-value=1.1e-10  Score=112.17  Aligned_cols=98  Identities=11%  Similarity=-0.066  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA-HFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999999876 489999999


Q ss_pred             HcCChHHHHHHHhccccCC
Q 012265          199 AANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~  217 (467)
                      ..|++++|+..|++++++.
T Consensus        84 ~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.12  E-value=1.1e-08  Score=114.84  Aligned_cols=237  Identities=10%  Similarity=0.060  Sum_probs=158.4

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           37 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        37 lA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      .|.++..+|.++||..+|+++.  ...+....++  .+   +   .+...+...+.+                  .   .
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLi--e~---i---~nldrAiE~Aer------------------v---n 1103 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLI--EH---I---GNLDRAYEFAER------------------C---N 1103 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHH--HH---H---hhHHHHHHHHHh------------------c---C
Confidence            5889999999999999999974  1212111111  01   1   122223222221                  1   1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----------
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----------  185 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----------  185 (467)
                      ...++++.|..++..|++++|+..|.+.     ++...+.-.+..+.+.|++++|++.|..+.+..++.           
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence            2357888899999999999999998764     555666667777888888888888886655443221           


Q ss_pred             ----------------HHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          186 ----------------SKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       186 ----------------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                                      ...+ +.+|+.+...|+|++|...|.++       ..+..++.+|.++|++++|++.+++|...
T Consensus      1179 Kl~rleele~fI~~~n~ad~-~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1179 KTNRLAELEEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             hhcCHHHHHHHHhCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence                            1222 56777888888888888888875       35778889999999999999998876432


Q ss_pred             --HHHhc--------------cC--CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCChh
Q 012265          250 --WLNAM--------------TE--DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVD  310 (467)
Q Consensus       250 --~~~~~--------------~~--~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d~~  310 (467)
                        |.+..              -.  -......+.+++.+|...|.+++|+.+|+.++..++. ....-.|..+|+...++
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence              21100              00  0001123456788999999999999999999998854 34455577788888887


Q ss_pred             HHHHHHh
Q 012265          311 KAESYEK  317 (467)
Q Consensus       311 kA~~l~~  317 (467)
                      +..+.++
T Consensus      1331 klmEhlk 1337 (1630)
T 1xi4_A         1331 KMREHLE 1337 (1630)
T ss_pred             HHHHHHH
Confidence            7655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.11  E-value=3e-09  Score=107.34  Aligned_cols=223  Identities=9%  Similarity=-0.032  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      ..++.|.-+...|++++|++.|..+++..+.......        ..  ........                       
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~--~~~~~~~~-----------------------   52 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GA--SVDDKRRN-----------------------   52 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SS--SBCSHHHH-----------------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HH--HHHHHHhh-----------------------
Confidence            4678899999999999999999999998875432111        00  00011111                       


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH------HHHHHHHHHhcCChhHHHHHHHHHHHhCCC--
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP------LLLQAAVLVRENKAGKAEELLGQFAEKLPD--  184 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~------~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--  184 (467)
                         ....+..+.+.+|...|++++|.+.+..++...+.....      ....+.++...|++++|+.+++.++...+.  
T Consensus        53 ---~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           53 ---EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK  129 (434)
T ss_dssp             ---HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence               112346788999999999999999999988766554332      123344455689999999999998865321  


Q ss_pred             ---cHHHHHHHHHHHHHHcCChHHHHHHHhccccC----CCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265          185 ---KSKIILLARAQVAAAANHPFIAAESLAKIPDI----QHM---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM  254 (467)
Q Consensus       185 ---~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~  254 (467)
                         ....+...||.+|...|+|++|+..|+.+...    +..   ..++..++.+|...|++++|..++++++.......
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence               11124578999999999999999999988631    222   34567889999999999999999999998765533


Q ss_pred             cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          255 TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       255 ~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+......++...|.++...|++++|...|.+++...
T Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            2112233455667888889999999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.11  E-value=1.1e-09  Score=89.35  Aligned_cols=115  Identities=13%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.++...|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++.++.+|.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHH
Confidence            4677888999999999999999999999999988888888889999999999999999999999988765 488999999


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      ..|++++|+..|+++++..+ .+.+...++.++..+|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999887654 5666777777776554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.6e-09  Score=89.94  Aligned_cols=100  Identities=12%  Similarity=0.001  Sum_probs=90.4

Q ss_pred             chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265          152 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALK  230 (467)
Q Consensus       152 ~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly  230 (467)
                      ...+...|..+...|++++|+..|.+++..+|++... ++.+|.+|...|++++|+..|++++.+++ ++..+..++.+|
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4456778889999999999999999999999999875 48999999999999999999999998765 677888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHH
Q 012265          231 ERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       231 ~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      ..+|++++|+..|++++...+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999987643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=6.3e-10  Score=108.01  Aligned_cols=172  Identities=14%  Similarity=0.084  Sum_probs=124.7

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD  109 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~  109 (467)
                      -.....+.+.+|..+|++++|+..|.+++...+.              +   .+.                         
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~--------------~---~~~-------------------------   72 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN--------------N---RSL-------------------------   72 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------T---TCH-------------------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------c---CCH-------------------------
Confidence            4455666778888888888888888877664210              0   000                         


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC--c----hHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS--V----MPLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~--~----~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                           .....++.|.+.++...|++++|+..+++++..++..  .    .++...|.++.. |++++|+..|++++..+|
T Consensus        73 -----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~  146 (307)
T 2ifu_A           73 -----FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE  146 (307)
T ss_dssp             -----HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence                 0112345677888888999999999999887665432  1    234456677777 999999999999998776


Q ss_pred             Cc-----HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          184 DK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH----M---PATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       184 ~~-----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      ..     ...++..+|.+|..+|++++|+..|++++.+..    .   ...+..++.+|..+|++++|+..|++++ ..
T Consensus       147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI  224 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred             hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence            42     123457889999999999999999999986421    1   1245667888999999999999999998 54

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.10  E-value=1.2e-09  Score=105.64  Aligned_cols=174  Identities=14%  Similarity=0.055  Sum_probs=127.8

Q ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP--DKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P--~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      |+..+++++...+.+....++.|.++...|++++|+++|.+.+...|  ++... ...++++|+..|+.+.|...|+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea-~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTEL-LLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            78889988877656666678999999999999999999999999887  66654 5889999999999999999999987


Q ss_pred             cCCC-----ChhHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH
Q 012265          215 DIQH-----MPATVATL--VALKERAG--DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE  285 (467)
Q Consensus       215 ~~~~-----~p~~~~~l--~~ly~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le  285 (467)
                      +.++     .-.++..|  +.+.+..|  ++.+|..+|+++...+    ++ .....++.  . +++.+|++++|...++
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~-~~~~~lLl--n-~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PT-WKTQLGLL--N-LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CS-HHHHHHHH--H-HHHHHTCHHHHHHHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CC-cccHHHHH--H-HHHHcCCHHHHHHHHH
Confidence            6544     12344344  44455556  9999999999986532    11 01111232  3 7899999999999999


Q ss_pred             HHHHh----------cCC-HHHHHHHHHHhccCChhHHHHHHhcCC
Q 012265          286 ELVKT----------HGS-IEALVGLVTTSAHVDVDKAESYEKRLK  320 (467)
Q Consensus       286 ~ll~~----------~pd-~~ala~Lv~a~~~~d~~kA~~l~~~L~  320 (467)
                      .+++.          +|+ .+++++++.+.....- .|.+|+.+|.
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~  280 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLV  280 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHH
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHH
Confidence            88876          354 6888887655433332 5666765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.10  E-value=6.6e-10  Score=97.06  Aligned_cols=103  Identities=15%  Similarity=-0.027  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ...+++.+.+++..|++++|+..+++++..+|++..++...+.++...|++++|+..|++++..+|++... ++.+|.+|
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA-WSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999875 48999999


Q ss_pred             HHcCChHHHHHHHhccccCCC-Chh
Q 012265          198 AAANHPFIAAESLAKIPDIQH-MPA  221 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~-~p~  221 (467)
                      ...|++++|+..|++++++.+ ++.
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchH
Confidence            999999999999999987654 444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.10  E-value=3.3e-10  Score=94.33  Aligned_cols=97  Identities=16%  Similarity=0.010  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .++.+..++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-HAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHc
Confidence            46778888888888888888888888888888888888888888888888888888888888888765 47888888888


Q ss_pred             CChHHHHHHHhccccCCC
Q 012265          201 NHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~  218 (467)
                      |++++|+..|++++...+
T Consensus        99 g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            888888888888876543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.10  E-value=4.7e-10  Score=94.21  Aligned_cols=108  Identities=11%  Similarity=0.019  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH------HHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK------IILL  191 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~------~~~l  191 (467)
                      ...+.|.+..++..|++++|+..+++++..+|++..++...|.++...|++++|+..++++++..|++..      .+++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            3456778888888888888888888888888888888778888888888888888888888877665421      1335


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCChhHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVAT  225 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~  225 (467)
                      .+|.+|...|++++|+..|++++...++|.++..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  121 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence            6677777777777777777777665556655433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.09  E-value=1.5e-09  Score=90.10  Aligned_cols=97  Identities=16%  Similarity=0.186  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARA  194 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~La  194 (467)
                      .++.+..++..|++++|...++.++..+|++.   .+++..|.++...|++++|+..|++++..+|++   ... ++.+|
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG-LLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH-HHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH-HHHHH
Confidence            56788888899999999999999888888887   577788888888999999999999999988887   554 47888


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      .+|...|++++|+..|++++...+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC
Confidence            899999999999999888876544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=2e-09  Score=86.84  Aligned_cols=110  Identities=15%  Similarity=0.015  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.+++..|++++|...++.++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~   83 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG-YSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHH-HHHHHHHHH
Confidence            4577889999999999999999999999999999988899999999999999999999999999998775 488999999


Q ss_pred             HcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265          199 AANHPFIAAESLAKIPDIQH-MPATVATLVAL  229 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l  229 (467)
                      ..|++++|+..|+++++..+ ++.++..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999988765 55555555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=4.3e-09  Score=96.40  Aligned_cols=159  Identities=13%  Similarity=-0.011  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC----ChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN----KAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~----~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      ..+++.+.++...+++++|...++++..  .++..+....+.++.. +    ++++|+..|+++++.  ++... .+.|+
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a-~~~Lg   92 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSG-EIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHH-HHHHH
Confidence            4688999999999999999999999875  4677888888888877 6    899999999999764  56655 48999


Q ss_pred             HHHHH----cCChHHHHHHHhccccCCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265          195 QVAAA----ANHPFIAAESLAKIPDIQHM---PATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI  263 (467)
Q Consensus       195 ql~~~----~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l  263 (467)
                      .+|..    .+++++|+.+|+++.+..+.   +.....|+.+|..    .+++++|+.+|++++..     ++++   ..
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~---~a  164 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-----SRTG---YA  164 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-----SCTT---HH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----CCCH---HH
Confidence            99998    89999999999999987663   7778899999999    88999999999999863     1112   13


Q ss_pred             HHHHHHHHHHC-C-----ChhHHHHHHHHHHHhc
Q 012265          264 MQEAASFKLRH-G-----REEDASHLFEELVKTH  291 (467)
Q Consensus       264 l~~la~~~l~~-g-----~~~~A~~~le~ll~~~  291 (467)
                      +..+|.+|... |     ++++|..+|+++++..
T Consensus       165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55689988764 4     8999999999999874

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.07  E-value=1.1e-09  Score=90.09  Aligned_cols=123  Identities=11%  Similarity=0.007  Sum_probs=102.9

Q ss_pred             CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265          148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL  226 (467)
Q Consensus       148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l  226 (467)
                      +|.+...++..|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34455667788889999999999999999999999998765 48999999999999999999999987654 57788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE  278 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~  278 (467)
                      +.+|...|++++|+..|++++...    +.+   ...+..+|.++...|+++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELD----PDN---ETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC----ccc---hHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999763    222   234566788888888763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.07  E-value=1.2e-09  Score=98.94  Aligned_cols=136  Identities=10%  Similarity=-0.014  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      ++..|.++...|++++|+..|++++  .| +.. +++.+|.+|...|++++|+..|++++...+ .+.++..++.+|..+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR-ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            4567788899999999999999986  33 444 458999999999999999999999997654 677888999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          234 GDIDGAAAVLDSAIKWWLNAM---------TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       234 g~~~~A~~~l~~al~~~~~~~---------~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      |++++|+..|++++...+...         ...+....++..+|.++...|++++|...|++++..+|+.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            999999999999997542211         0012233567778999999999999999999999998864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.07  E-value=1.3e-09  Score=90.29  Aligned_cols=121  Identities=12%  Similarity=0.026  Sum_probs=101.4

Q ss_pred             CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265          148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL  226 (467)
Q Consensus       148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l  226 (467)
                      .|.+...+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL-YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH-HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45566678889999999999999999999999999998775 48999999999999999999999987655 67788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR  276 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~  276 (467)
                      +.+|...|++++|+..|++++...+.       ...++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSS-------CKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGG-------GTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhcC
Confidence            99999999999999999999876321       12345557877776653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.06  E-value=2.3e-09  Score=102.84  Aligned_cols=168  Identities=13%  Similarity=0.009  Sum_probs=123.8

Q ss_pred             CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHH
Q 012265          149 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLV  227 (467)
Q Consensus       149 P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~  227 (467)
                      |.+...+...|.++...|++++|+..|.+++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4556677888999999999999999999999999999875 48999999999999999999999998875 677888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHH-----------------------HHHHHHHHHHHCCChhHHHHH
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSV-----------------------IMQEAASFKLRHGREEDASHL  283 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~-----------------------ll~~la~~~l~~g~~~~A~~~  283 (467)
                      .+|..+|++++|+..|++++...+.....- .....                       +...++.+  ..|++++|++.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~  157 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEE  157 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence            999999999999999999998765432100 00000                       11112222  36788999999


Q ss_pred             HHHHHHhcCCHHHH-HHHHHHhcc--CChhHHHHHHhcC
Q 012265          284 FEELVKTHGSIEAL-VGLVTTSAH--VDVDKAESYEKRL  319 (467)
Q Consensus       284 le~ll~~~pd~~al-a~Lv~a~~~--~d~~kA~~l~~~L  319 (467)
                      |+++++.+|+...+ ..+...+..  ...+.+..+....
T Consensus       158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988874332 222222222  2234566665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=2.4e-09  Score=98.12  Aligned_cols=170  Identities=15%  Similarity=-0.004  Sum_probs=133.5

Q ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC----ChHHHHHHHhc
Q 012265          137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN----HPFIAAESLAK  212 (467)
Q Consensus       137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g----~~~~A~~~L~~  212 (467)
                      |.+.++++...  ++..+.+..+.++...+++++|+..|+++++.  ++... ++.|+.+|.. +    ++++|+.+|++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a-~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDA-LALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHH-HHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH-HHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            45556665543  77888899999999999999999999999885  45554 4899999998 7    99999999999


Q ss_pred             cccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHH
Q 012265          213 IPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLF  284 (467)
Q Consensus       213 ~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~l  284 (467)
                      +.+.. ++.....|+.+|..    .+++++|+.+|++++..     .........+..+|.+|..    .+++++|+.+|
T Consensus        79 A~~~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           79 AVEAG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHTT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHCC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            97643 56677789999987    88999999999998853     1110223456778999999    88999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhcc-------CChhHHHHHHhc
Q 012265          285 EELVKTHGSIEALVGLVTTSAH-------VDVDKAESYEKR  318 (467)
Q Consensus       285 e~ll~~~pd~~ala~Lv~a~~~-------~d~~kA~~l~~~  318 (467)
                      ++++...++..+...|...|..       .|.++|..+.+.
T Consensus       153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~  193 (212)
T 3rjv_A          153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV  193 (212)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence            9999885556677777777642       278888877643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.05  E-value=2.6e-09  Score=93.03  Aligned_cols=137  Identities=18%  Similarity=0.152  Sum_probs=104.9

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      +.+..+.++|..+...|++++|+..|.+++...+...           ....+.+..  ...+.                
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~-----------~~~~~~~~~--~~~~~----------------   59 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI-----------LREKPGEPE--WVELD----------------   59 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HTSCTTSHH--HHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------ccCCCCHHH--HHHHH----------------
Confidence            3567789999999999999999999999987632100           000111110  00110                


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                            +....+++|.+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++..+|++...
T Consensus        60 ------~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  133 (162)
T 3rkv_A           60 ------RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV  133 (162)
T ss_dssp             ------HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             ------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence                  12345789999999999999999999999999999999999999999999999999999999999999998744


Q ss_pred             HHHHHHHHHHHc
Q 012265          189 ILLARAQVAAAA  200 (467)
Q Consensus       189 ~~l~Laql~~~~  200 (467)
                      +...+..+....
T Consensus       134 ~~~~l~~~~~~~  145 (162)
T 3rkv_A          134 VAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445566655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.05  E-value=1.8e-09  Score=97.41  Aligned_cols=122  Identities=11%  Similarity=-0.032  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc----------------hHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----------------MPLLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~----------------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      ...+++.+..++..|++++|+..+++++...|.+.                .++...|.++...|++++|+..+++++..
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34677899999999999999999999999999887                67778889999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++.++...++..++.
T Consensus       118 ~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          118 DKNNVKA-LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             STTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             CcccHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876 48999999999999999999999998765 6777888888888887777665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.02  E-value=6.6e-10  Score=112.22  Aligned_cols=243  Identities=14%  Similarity=0.111  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .+|.++|..+..+|++++|++.|.++     .|...+.-.......   .+...++.+.+......              
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~---~g~~EeAi~yl~~ark~--------------   90 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT---SGNWEELVKYLQMARKK--------------   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHh--------------
Confidence            48999999999999999999999653     344444322222222   23334444433221100              


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                      +   ....+....+.+|...|+++++.+.++.     |+. ..+...|..+...|.|++|...|..+     +   . +.
T Consensus        91 ~---~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~---n-~~  152 (449)
T 1b89_A           91 A---RESYVETELIFALAKTNRLAELEEFING-----PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----S---N-FG  152 (449)
T ss_dssp             ---------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-----T---C-HH
T ss_pred             C---ccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-----h---h-HH
Confidence            0   1124556677788889999997766643     433 46677788889999999999999876     1   2 26


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      .||..+...|+|++|++.++++.    ++.+|..++..+...|+++.|..+....+ .+       +.   -+..++.+|
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~-------ad---~l~~lv~~Y  217 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH-------AD---ELEELINYY  217 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC-------HH---HHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC-------Hh---hHHHHHHHH
Confidence            78999999999999999999984    68889899999999999999976665432 11       11   133478889


Q ss_pred             HHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCChhHHHHHHhcCCCCCCCCCcChhhhh
Q 012265          272 LRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLE  334 (467)
Q Consensus       272 l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vDvd~Le  334 (467)
                      ...|++++|+.+|+.++..++. ...+..|..+|+...|++..+.++..-     +.|++..+.
T Consensus       218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~-----~~ini~k~~  276 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW-----SRVNIPKVL  276 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-----TTSCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHhcCcHHH
Confidence            9999999999999999998853 677888999999999999887766432     345555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=9.9e-09  Score=98.58  Aligned_cols=159  Identities=9%  Similarity=-0.038  Sum_probs=124.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHH
Q 012265          159 AAVLVRENKAGKAEELLGQFAEKLPDKSKI-----ILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATL  226 (467)
Q Consensus       159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~-----~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l  226 (467)
                      +..++..|++++|+.++++++...+.....     ++..++.+|...|++++|+..|++++++..   +    ..++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            566788999999999999999987765442     223578889999999999999999986421   2    1257789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHH
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVG  299 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~  299 (467)
                      +.+|..+|++++|+.+|++++..+...+........++..+|.++...|++++|+..|++++...+   +    ..++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999887654333345555788899999999999999999999998762   1    355666


Q ss_pred             HHHHhccCC-h-hHHHHHHh
Q 012265          300 LVTTSAHVD-V-DKAESYEK  317 (467)
Q Consensus       300 Lv~a~~~~d-~-~kA~~l~~  317 (467)
                      +..++.... . ++|..+..
T Consensus       242 lg~~~~~~g~~~~~A~~~~~  261 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHH
Confidence            777775544 3 78876654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.00  E-value=7.8e-09  Score=84.11  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             CCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHH
Q 012265          148 FPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVAT  225 (467)
Q Consensus       148 ~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~  225 (467)
                      +|.. ...+...+.++...|++++|+..+++++...|++... .+.++.+|...|++++|+..|++++...+ ++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            4544 4566778888999999999999999999999998765 48999999999999999999999987654 6677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      ++.+|...|++++|+..|++++...    +.+   ..++..++.++...|
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELD----PNN---AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHhcc
Confidence            9999999999999999999998752    222   234555677665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=2.5e-09  Score=89.67  Aligned_cols=97  Identities=11%  Similarity=-0.066  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..+++.+.+++..|++++|...++.++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~   88 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA-HFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH-HHHHHHHHH
Confidence            3566777777777777777777777777777777777777777777777777777777777777777654 367777777


Q ss_pred             HcCChHHHHHHHhccccC
Q 012265          199 AANHPFIAAESLAKIPDI  216 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~  216 (467)
                      ..|++++|+..|++++++
T Consensus        89 ~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHH
Confidence            777777777777777643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.00  E-value=1.8e-09  Score=88.92  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-------HHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-------SKIILL  191 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-------~~~~~l  191 (467)
                      ..+++.+.+++..|++++|...+++++..+|.+..++...|.++...|++++|+..+++++...|++       ... ++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA-YA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH-HH
Confidence            3566778888888888888888888888888887777778888888888888888888888877654       443 47


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER  232 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~  232 (467)
                      .+|.+|...|++++|+..|+++++..+++.+...+..++..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  124 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            77888888888888888888877665556555555554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.99  E-value=2.6e-09  Score=93.19  Aligned_cols=102  Identities=18%  Similarity=0.078  Sum_probs=92.0

Q ss_pred             CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265          148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL  226 (467)
Q Consensus       148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l  226 (467)
                      .+.+...++..|.++...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|++++.+++ ++.++..+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34455667888999999999999999999999999999875 48999999999999999999999998765 67888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      +.+|..+|++++|+..|++++...
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC
Confidence            999999999999999999999875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.99  E-value=3.9e-09  Score=89.94  Aligned_cols=133  Identities=10%  Similarity=-0.108  Sum_probs=88.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHH
Q 012265          158 QAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVAT  225 (467)
Q Consensus       158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~  225 (467)
                      .|.++...|++++|+..+++++...+..     ...+...+|.+|...|++++|+..+++++++..       ...++..
T Consensus        15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   94 (164)
T 3ro3_A           15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS   94 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            3344444444444444444444432211     011346778888888888888888888764311       1234567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ++.+|...|++++|+..+++++...+... ........+..+|.++...|++++|...|+++++..
T Consensus        95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           95 LGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            88899999999999999999988765432 223334556678999999999999999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.98  E-value=4.6e-10  Score=101.30  Aligned_cols=145  Identities=10%  Similarity=-0.037  Sum_probs=77.5

Q ss_pred             HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH---------------HHHHHHHH
Q 012265          130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS---------------KIILLARA  194 (467)
Q Consensus       130 ~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~---------------~~~~l~La  194 (467)
                      ..+.++.+.+.++......+.....+...|..+...|++++|+..|.+++...|++.               ..+++.+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            344455554444433333333344455667777777888888888888887777654               12335566


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .+|...|++++|+..+++++.+.+ ++.++..++.+|..+|++++|+..|++++...    +.+   ..++..++.++..
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~l~~~~~~  168 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNN---LDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCc---HHHHHHHHHHHHH
Confidence            666666666666666666655443 44455556666666666666666666665542    111   1233344555555


Q ss_pred             CCChhHHH
Q 012265          274 HGREEDAS  281 (467)
Q Consensus       274 ~g~~~~A~  281 (467)
                      .++..++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            55554444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.98  E-value=5.1e-08  Score=95.43  Aligned_cols=229  Identities=10%  Similarity=-0.023  Sum_probs=160.9

Q ss_pred             HHhCChH-HHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC-------hhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           42 QLLGNTQ-EAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD-------VNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        42 ~~~G~~~-eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      ...|.++ +|+.++..++..+|++..+...-..-+..+.....       ..+.+..+..+...+|              
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--------------  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--------------  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--------------
Confidence            4567666 89999999999999998876533222222221111       1222222222211111              


Q ss_pred             HHHHHHHHHHHHHHHHHcCC--HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANK--MDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-AGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~--~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~-~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                        ..-.++.+++.++...+.  ++++...++.++..+|.|..++...+.++...|. +++++..+.++++.+|.+..++ 
T Consensus       106 --Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW-  182 (331)
T 3dss_A          106 --KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW-  182 (331)
T ss_dssp             --TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH-
T ss_pred             --CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH-
Confidence              123578888888888884  8999999999999999999999999888888888 5899999999999999998765 


Q ss_pred             HHHHHHHHHc--------------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc-----------CCHHHHHHHHH
Q 012265          191 LARAQVAAAA--------------NHPFIAAESLAKIPDIQH-MPATVATLVALKERA-----------GDIDGAAAVLD  244 (467)
Q Consensus       191 l~Laql~~~~--------------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~-----------g~~~~A~~~l~  244 (467)
                      ..++.++...              +.+++++..+.+++...+ +..+|..+..++...           +.+++++..+.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            6677777665              568899999999997765 667776666666554           34677777777


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHH---HCCChhHHHHHHHHHHHhcCCH
Q 012265          245 SAIKWWLNAMTEDNKLSVIMQEAASFKL---RHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       245 ~al~~~~~~~~~~~~~~~ll~~la~~~l---~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      ++++..    |   +....+..++.+..   ..|..++....|.++++.+|..
T Consensus       263 elle~~----p---d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r  308 (331)
T 3dss_A          263 ELQELE----P---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  308 (331)
T ss_dssp             HHHHHC----T---TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhhC----c---ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence            777652    1   22333433333221   3678889999999999999863

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.98  E-value=8.9e-09  Score=84.64  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA  268 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la  268 (467)
                      ++.+|.++...|++++|+..|++++...+ ++.++..++.+|...|++++|+.++++++...+...........++..+|
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            36778888888888888888888876543 56667778888888888888888888888776543211111234567789


Q ss_pred             HHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012265          269 SFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT  303 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a  303 (467)
                      .++...|++++|...|++++...|+......+..+
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~  121 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999998876555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.97  E-value=2.2e-09  Score=89.31  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265          154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER  232 (467)
Q Consensus       154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~  232 (467)
                      ..+..|..+...|++++|+..|++++..+|++...+ +.+|.++...|++++|+..|++++++++ ++.++..++.+|..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356778889999999999999999999999998764 8999999999999999999999998876 67888899999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q 012265          233 AGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       233 ~g~~~~A~~~l~~al~~~  250 (467)
                      .|++++|+..|++++...
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.97  E-value=8e-09  Score=86.49  Aligned_cols=105  Identities=18%  Similarity=0.036  Sum_probs=94.0

Q ss_pred             cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHH
Q 012265          147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVAT  225 (467)
Q Consensus       147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~  225 (467)
                      ..|.+...++..|.++...|++++|+..+.+++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            356677788889999999999999999999999999999875 48999999999999999999999998765 6778889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      ++.+|...|++++|+..|++++...+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999999988654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.96  E-value=2.2e-09  Score=93.43  Aligned_cols=112  Identities=12%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccc------------------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDM------------------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~------------------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                      ...+.+.+..++..|++++|+..|.+++..                  +|.+..++...|.++...|++++|+..+.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            346778999999999999999999999887                  55556677788888999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch-hHHHHHHHHH
Q 012265          180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP-ATVATLVALK  230 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p-~~~~~l~~ly  230 (467)
                      ..+|++...+ +.+|.+|...|++++|+..|++++.+.+ ++ .+...+..+.
T Consensus        91 ~~~p~~~~a~-~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           91 KREETNEKAL-FRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             hcCCcchHHH-HHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            9999998754 8899999999999999999999987765 34 3343444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.96  E-value=4.6e-09  Score=108.04  Aligned_cols=124  Identities=15%  Similarity=0.072  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---------------chHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDS---------------VMPLLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---------------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      ....+++.+.+++..|++++|+..|++++..+|.+               ..+++..|.++.+.|++++|+..|.+++..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            34578899999999999999999999999999998               467788899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA  241 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~  241 (467)
                      +|++... ++.+|.+|...|++++|+..|++++++.+ ++.++..++.++...+++++|..
T Consensus       347 ~p~~~~a-~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          347 DSANEKG-LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             STTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876 49999999999999999999999998875 66778889999999888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.96  E-value=1.4e-08  Score=84.06  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL  112 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL  112 (467)
                      .++.+|.++..+|++++|+..|+.++...|++...                                             
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---------------------------------------------   38 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT---------------------------------------------   38 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH---------------------------------------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc---------------------------------------------
Confidence            46789999999999999999999999887753210                                             


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265          113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                           ..++++.+.+++..|++++|...++.++..+|++   ..+++..|.++...|++++|+..|++++..+|++... 
T Consensus        39 -----~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-  112 (129)
T 2xev_A           39 -----PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA-  112 (129)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH-
T ss_pred             -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH-
Confidence                 0135567888999999999999999999999999   6778889999999999999999999999999998754 


Q ss_pred             HHHHHHHHHHcCC
Q 012265          190 LLARAQVAAAANH  202 (467)
Q Consensus       190 ~l~Laql~~~~g~  202 (467)
                      ...+..+....++
T Consensus       113 ~~a~~~l~~l~~~  125 (129)
T 2xev_A          113 RVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhh
Confidence            3555555544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.6e-09  Score=88.26  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      ..+++.+..++..|++++|...+++++..+|++   ..++...+.++...|++++|+..+++++..+|++... ++.+|.
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~  107 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA-LYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH-HHHHHH
Confidence            456788889999999999999999999999987   6677788888889999999999999999999988765 488899


Q ss_pred             HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265          196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALK  230 (467)
Q Consensus       196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly  230 (467)
                      +|...|++++|+..|++++.+.+ ++.++..+..+.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999887654 555555555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.94  E-value=1.7e-07  Score=105.29  Aligned_cols=248  Identities=15%  Similarity=0.085  Sum_probs=141.7

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh----------
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM----------   99 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~----------   99 (467)
                      ...+|.|+|..+..+|++++|+..|.++     +|...+.-.+.-+   ...++..++.+.+.......+          
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~---~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA---NTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH---HHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            4588999999999999999999999764     4555543222222   222344555555433211100          


Q ss_pred             -----hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHH
Q 012265          100 -----QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEEL  174 (467)
Q Consensus       100 -----~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~  174 (467)
                           +.....+.+   +..... .-+++.|..+...|++++|...|..+        ..+.-.+..+++.|++++|++.
T Consensus      1176 aYAKl~rleele~f---I~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1176 ALAKTNRLAELEEF---INGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             HHHhhcCHHHHHHH---HhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence                 000000000   000001 12234555555555555555555553        1233344445555555555555


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265          175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM  254 (467)
Q Consensus       175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~  254 (467)
                      ++++     .+...+ ...+..+...|+|..|..+...+.   .+|+.+..++..|...|.+++|+.+|+.++...    
T Consensus      1244 arKA-----~n~~aW-kev~~acve~~Ef~LA~~cgl~Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---- 1310 (1630)
T 1xi4_A         1244 ARKA-----NSTRTW-KEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLE---- 1310 (1630)
T ss_pred             HHHh-----CCHHHH-HHHHHHHhhhhHHHHHHHHHHhhh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----
Confidence            5544     112222 444555555555555555544322   256667788999999999999999999998642    


Q ss_pred             cCCchHHHHHHHHHHHHHH--CCChhHHHHHHHHHHHhcC------CHHHHHHHHHHhccCC-hhHHH
Q 012265          255 TEDNKLSVIMQEAASFKLR--HGREEDASHLFEELVKTHG------SIEALVGLVTTSAHVD-VDKAE  313 (467)
Q Consensus       255 ~~~~~~~~ll~~la~~~l~--~g~~~~A~~~le~ll~~~p------d~~ala~Lv~a~~~~d-~~kA~  313 (467)
                         +....++.++|.++.+  -++.-+++++|..-+...+      +...|..++..|.+.+ .++|.
T Consensus      1311 ---raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1311 ---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             ---hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence               3334567667777755  4566688888887776544      2455777888886554 67775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.93  E-value=7.7e-09  Score=106.36  Aligned_cols=150  Identities=15%  Similarity=0.039  Sum_probs=119.1

Q ss_pred             HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265           26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA  105 (467)
Q Consensus        26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  105 (467)
                      ...+.+..+..+|.++..+|++++|+..|++++...|.+...              .  .+-...+.             
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~--~~~~~~~~-------------  313 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------S--EKESKASE-------------  313 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------C--HHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------C--hHHHHHHH-------------
Confidence            345677789999999999999999999999999988865320              0  00000000             


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                               .....+++|++.+++..|++++|+..|++++..+|++..+++..|.++...|++++|+..|+++++.+|++
T Consensus       314 ---------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          314 ---------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             ---------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence                     12345789999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHH-Hhccc
Q 012265          186 SKIILLARAQVAAAANHPFIAAES-LAKIP  214 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~-L~~~~  214 (467)
                      ... +..++.++...|++++|... +.+++
T Consensus       385 ~~a-~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          385 KAA-RLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             -CH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            865 48899999999999988754 44443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=4.2e-08  Score=87.65  Aligned_cols=154  Identities=14%  Similarity=0.042  Sum_probs=111.6

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----CC---ChhHHHHHHHHHHHcCC
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----QH---MPATVATLVALKERAGD  235 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~---~p~~~~~l~~ly~~~g~  235 (467)
                      +..|++++|++.++.+. .+|.....++..+|.+|...|++++|+..+++++++    ..   ...++..++.+|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            46899999999555443 366444445689999999999999999999999752    11   23456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCH----HHHHHHHHHh-ccC
Q 012265          236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSI----EALVGLVTTS-AHV  307 (467)
Q Consensus       236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~----~ala~Lv~a~-~~~  307 (467)
                      +++|+..+++++...+............+..+|.++...|++++|...|++++...   ++.    .++..+..++ ...
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999998764331211445567778999999999999999999999764   232    2234455554 456


Q ss_pred             ChhHHHHHHh
Q 012265          308 DVDKAESYEK  317 (467)
Q Consensus       308 d~~kA~~l~~  317 (467)
                      +.+.|..+..
T Consensus       162 ~~~~A~~~~~  171 (203)
T 3gw4_A          162 NLLEAQQHWL  171 (203)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7788876654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.91  E-value=5.1e-08  Score=95.94  Aligned_cols=241  Identities=11%  Similarity=0.029  Sum_probs=168.4

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .++-....+....+..++|+.++..+|..+|++..+...-..-+..++  ....+.+..+..+....|.           
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPK-----------  121 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLK-----------  121 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCC-----------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCC-----------
Confidence            344444556677788899999999999999999888764333332332  1345555555444332222           


Q ss_pred             CCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh--------HHHHHHHHHHHh
Q 012265          112 LSPKQREAIYANRVLLLLHA-N-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG--------KAEELLGQFAEK  181 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~-~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~--------~A~~~l~~~l~~  181 (467)
                           .-.+..++..++... + .++++...++.++..+|.+..++....-++...+.++        +++..+.++++.
T Consensus       122 -----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          122 -----SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             -----CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence                 224677777777776 7 8999999999999999999999988888887777777        999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCC-------hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHH---------------
Q 012265          182 LPDKSKIILLARAQVAAAANH-------PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDG---------------  238 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~-------~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~---------------  238 (467)
                      +|.+..++ ...+.++...++       +++++..+.+++..++ +...+..+..++...|+...               
T Consensus       197 dp~N~SAW-~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~  275 (349)
T 3q7a_A          197 DGRNNSAW-GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN  275 (349)
T ss_dssp             CTTCHHHH-HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred             CCCCHHHH-HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence            99998765 778888888887       7899999999987765 66778888888888776510               


Q ss_pred             -H-HHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          239 -A-AAVLDSAIKWWLNAMT--EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       239 -A-~~~l~~al~~~~~~~~--~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                       . ..+.+-++.+.....+  .+....-++.-++.++...|+.++|.++|+.+....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~  332 (349)
T 3q7a_A          276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEY  332 (349)
T ss_dssp             ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence             0 1111112211111000  001222244557999999999999999999988543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.90  E-value=3.9e-09  Score=91.87  Aligned_cols=117  Identities=15%  Similarity=0.016  Sum_probs=92.2

Q ss_pred             hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265           29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL  108 (467)
Q Consensus        29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l  108 (467)
                      ..+..++.+|..++..|++++|+..|++++..+|+++..               +..+.                     
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~---------------------   52 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH---------------------   52 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH---------------------
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh---------------------
Confidence            355667899999999999999999999999999975431               00000                     


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc-------CCCCchHH----HHHHHHHHhcCChhHHHHHHHH
Q 012265          109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM-------FPDSVMPL----LLQAAVLVRENKAGKAEELLGQ  177 (467)
Q Consensus       109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~-------~P~~~~~~----ll~a~l~~~~~~~~~A~~~l~~  177 (467)
                           .+....+++|++.++...|++++|+..+++++..       +|++..++    +..|.++...|++++|+..|++
T Consensus        53 -----~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           53 -----AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence                 0112347899999999999999999999998888       88887777    7778888888888888888888


Q ss_pred             HHHhCCCcH
Q 012265          178 FAEKLPDKS  186 (467)
Q Consensus       178 ~l~~~P~~~  186 (467)
                      +++..|++.
T Consensus       128 Alel~p~d~  136 (159)
T 2hr2_A          128 VVEMIEERK  136 (159)
T ss_dssp             HHHHHHHCC
T ss_pred             HHhcCCCcH
Confidence            888777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.90  E-value=9.1e-09  Score=89.53  Aligned_cols=103  Identities=19%  Similarity=0.106  Sum_probs=75.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQHM-------------PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED  257 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~-------------p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~  257 (467)
                      +.+|..+...|+|++|+..|++++++.+.             ..++..++.++..+|++++|+..+++++..|.....-+
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            34444444455555555555544433221             22788899999999999999999999998865544434


Q ss_pred             chHHHHH----HHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          258 NKLSVIM----QEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       258 ~~~~~ll----~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +.....|    ...|.++..+|++++|+..|+++++.+|+
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            5555667    78899999999999999999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.89  E-value=2.4e-09  Score=105.70  Aligned_cols=153  Identities=12%  Similarity=-0.038  Sum_probs=85.2

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV  107 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  107 (467)
                      .+.+..+..+|.++..+|++++|+..|++++...|.+...           ....+..++...+                
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~~~~~l----------------  228 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLYGKYQDMALAV----------------  228 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-----------TCCHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-----------hhcccHHHHHHHH----------------
Confidence            4566778999999999999999999999999998855310           0001111111111                


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                               ...+++|.+.+++..|++++|+..|++++..+|++..+++..|.++...|++++|+..|+++++.+|++..
T Consensus       229 ---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          229 ---------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             ---------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence                     11367788888888888888888888888888888777777777788888888888888888877777765


Q ss_pred             HHHHHHHHH-HHHcCChHHHHHHHhccccCC
Q 012265          188 IILLARAQV-AAAANHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       188 ~~~l~Laql-~~~~g~~~~A~~~L~~~~~~~  217 (467)
                      . +..|+.+ ....+..+++...|.+++...
T Consensus       300 a-~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          300 I-RRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             -------------------------------
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            4 3566666 334566667777777766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.88  E-value=8.4e-09  Score=82.42  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=67.5

Q ss_pred             CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHH
Q 012265          148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVA  224 (467)
Q Consensus       148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~  224 (467)
                      +|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+   .+.++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY-WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            45666666666666777777777777777777777766554 36677777777777777777777765543   355566


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHH
Q 012265          225 TLVALKERA-GDIDGAAAVLDSAIK  248 (467)
Q Consensus       225 ~l~~ly~~~-g~~~~A~~~l~~al~  248 (467)
                      .++.+|... |++++|+..|++++.
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            677777777 777777777776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=2.3e-08  Score=84.43  Aligned_cols=103  Identities=16%  Similarity=0.005  Sum_probs=91.5

Q ss_pred             ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265          146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA  221 (467)
Q Consensus       146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~  221 (467)
                      ...|.+...++..|..+...|++++|+..|++++...|++   ... ++.+|.+|...|++++|+..|++++...+ ++.
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL-HRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHH-HHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            3456777788889999999999999999999999999986   444 58899999999999999999999987654 677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ++..++.+|...|++++|+..|++++..
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            8889999999999999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.87  E-value=3.4e-09  Score=104.62  Aligned_cols=133  Identities=15%  Similarity=0.042  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc-----------------hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-----------------MPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~-----------------~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                      ....+++.+..++..|++++|+..|++++...|++.                 .+++..|.++...|++++|+..|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345678899999999999999999999999999876                 367788899999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 012265          180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~  250 (467)
                      ..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..|..+ ....+..+.+...|.+++...
T Consensus       258 ~~~p~~~~a-~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          258 TEEEKNPKA-LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             HHCTTCHHH-HHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred             HhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999876 49999999999999999999999998765 56677777777 344567778888888887653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=2.9e-08  Score=79.88  Aligned_cols=96  Identities=14%  Similarity=0.035  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265          153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE  231 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~  231 (467)
                      ..++..|..+...|++++|+..+++++...|++... ++.+|.+|...|++++|+..++++++..+ ++.++..++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            456677888899999999999999999999999875 48999999999999999999999987665 6778889999999


Q ss_pred             HcCCHHHHHHHHHHHHHH
Q 012265          232 RAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       232 ~~g~~~~A~~~l~~al~~  249 (467)
                      ..|++++|+..|++++..
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            999999999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.86  E-value=8.3e-09  Score=82.43  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIILLARAQVA  197 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~  197 (467)
                      ++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..++++++..|+  +... ++.+|.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~l~~~~   86 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV-WAAKADAL   86 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH-HHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999  8775 48999999


Q ss_pred             HHc-CChHHHHHHHhccccCCC
Q 012265          198 AAA-NHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       198 ~~~-g~~~~A~~~L~~~~~~~~  218 (467)
                      ... |++++|+..|++++...+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHhCCHHHHHHHHHHHhhccc
Confidence            999 999999999999987543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.84  E-value=1.3e-08  Score=86.59  Aligned_cols=134  Identities=8%  Similarity=-0.118  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----  185 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----  185 (467)
                      ...++++.+.+++..|++++|...+++++...+...      .++...|.++...|++++|+..+++++...+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            345778899999999999999999999887655422      245677888899999999999999988765431     


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQ----H---MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      ...+...+|.+|...|++++|+..+++++++.    .   ...++..++.+|...|++++|+..+++++...
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            12245789999999999999999999997531    1   23356678999999999999999999998765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.83  E-value=1.3e-09  Score=112.94  Aligned_cols=124  Identities=11%  Similarity=-0.018  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      .+++.+.+++..|++++|+..++++++.+|++..++...|.++...|++++|+..++++++.+|++... ++.+|.+|..
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~~~~~   86 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG-YYRRAASNMA   86 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Confidence            355678888999999999999999999999999999999999999999999999999999999999876 4899999999


Q ss_pred             cCChHHHHHHHhccccCCC-ChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPATVATLVAL--KERAGDIDGAAAVLD  244 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l--y~~~g~~~~A~~~l~  244 (467)
                      +|++++|+..|++++++.+ ++..+..++.+  +..+|++++|+..++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999998765 56667677777  888999999999988

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.83  E-value=3.3e-08  Score=98.76  Aligned_cols=144  Identities=12%  Similarity=0.007  Sum_probs=116.3

Q ss_pred             hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265           28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV  107 (467)
Q Consensus        28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  107 (467)
                      .+.+..+..+|.++..+|++++|+..|++++...+...     .      .   ...    ......             
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----~------~---~~~----~~~~~~-------------  268 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----A------A---AED----ADGAKL-------------  268 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----H------H---SCH----HHHGGG-------------
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----c------c---cCh----HHHHHH-------------
Confidence            34567789999999999999999999999998644221     0      0   000    000000             


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                            .+....+++|.+.+++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++..|++..
T Consensus       269 ------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~  342 (370)
T 1ihg_A          269 ------QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  342 (370)
T ss_dssp             ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ------HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence                  12234678999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             HHHHHHHHHHHHcCChHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAES  209 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~  209 (467)
                      . +..++.++...++++++...
T Consensus       343 ~-~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          343 I-QAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHC
T ss_pred             H-HHHHHHHHHHHHHHHHHHHH
Confidence            5 48889999999988887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.82  E-value=1.3e-08  Score=101.84  Aligned_cols=123  Identities=16%  Similarity=0.057  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccc----------------cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPD----------------MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK  181 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~----------------~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~  181 (467)
                      ...+++.+..++..|++++|+..+++++.                .+|.+..++...|.++...|++++|+..++++++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34578899999999999999999999987                66777777888899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265          182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA  241 (467)
Q Consensus       182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~  241 (467)
                      +|++...+ +.+|.+|...|++++|+..|++++++.+ ++.++..++.++..+++.+++..
T Consensus       303 ~p~~~~a~-~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPSNTKAL-YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998764 8999999999999999999999988765 67777788888888777766543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.82  E-value=3e-09  Score=87.44  Aligned_cols=85  Identities=18%  Similarity=0.003  Sum_probs=52.7

Q ss_pred             cCCHHHHHHHHHhcccc---CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265          131 ANKMDQARELVAALPDM---FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA  207 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~---~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~  207 (467)
                      .|++++|+..+++++..   +|++..+++..|.++...|++++|+..++++++.+|++... ++.+|.+|...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL-RVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCCHHHHH
Confidence            45566666666666666   35555566666666666666666666666666666666554 366666666666666666


Q ss_pred             HHHhccccC
Q 012265          208 ESLAKIPDI  216 (467)
Q Consensus       208 ~~L~~~~~~  216 (467)
                      ..|++++..
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.78  E-value=3.5e-09  Score=109.59  Aligned_cols=120  Identities=13%  Similarity=0.005  Sum_probs=97.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265          158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI  236 (467)
Q Consensus       158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~  236 (467)
                      .|..+...|++++|+..|+++++.+|++... +..+|.+|..+|++++|+..|++++++.+ ++.++..++.+|..+|++
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            3455678999999999999999999999875 48999999999999999999999998875 677888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH--HHHCCChhHHHHHHH
Q 012265          237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF--KLRHGREEDASHLFE  285 (467)
Q Consensus       237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~--~l~~g~~~~A~~~le  285 (467)
                      ++|+..|++++...    +++..   .+..++.+  +...|++++|+..|+
T Consensus        91 ~eA~~~~~~al~~~----p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK----PHDKD---AKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS----TTCTT---HHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhC----CCCHH---HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999863    22222   23335555  888999999999999

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.77  E-value=7.9e-07  Score=95.49  Aligned_cols=256  Identities=11%  Similarity=0.056  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHhCC---------hHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHH-HhhhhhhhhhhhHH
Q 012265           33 IAVQLAYVQQLLGN---------TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSL-KKLDRIKEKDMQNF  102 (467)
Q Consensus        33 i~~qlA~v~~~~G~---------~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~-~~l~~~~~~~~~~~  102 (467)
                      +.+...|+.....+         .+....+|++++...|.+..+.+..+.-+...+.   ..++. ..+.+.....|   
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~---~~~a~r~il~rAi~~~P---  375 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT---DSTVITKYLKLGQQCIP---  375 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC---CTTHHHHHHHHHHHHCT---
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhCC---
Confidence            34556777766654         2345678999999999999888755433322222   23333 33333322211   


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-----------CCC-----------chHHHHHHH
Q 012265          103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-----------PDS-----------VMPLLLQAA  160 (467)
Q Consensus       103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-----------P~~-----------~~~~ll~a~  160 (467)
                                   ....+++..+.+....|+++.|+.++++++...           |.+           ..+++..+.
T Consensus       376 -------------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~  442 (679)
T 4e6h_A          376 -------------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN  442 (679)
T ss_dssp             -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence                         123577888999999999999999999988642           532           234566666


Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDG  238 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~  238 (467)
                      +..+.|..+.|..+|.+++...|.....+++..|++....| +++.|..+|+.+++.- ..+.++...+.+....|+.+.
T Consensus       443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~  522 (679)
T 4e6h_A          443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ  522 (679)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence            66778899999999999998733221223355666666655 4999999999998643 367788788888889999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhH
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDK  311 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~k  311 (467)
                      |..+|++++...    ++......+|.....|-...|+.+.+..+++++++..|+...+..++--|...+.+.
T Consensus       523 AR~lferal~~~----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~~~~  591 (679)
T 4e6h_A          523 VKSLFESSIDKI----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNY  591 (679)
T ss_dssp             HHHHHHHHTTTS----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTTBCH
T ss_pred             HHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCcchh
Confidence            999999998642    111245567777788888999999999999999999998777777777776555433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.8e-07  Score=94.13  Aligned_cols=170  Identities=9%  Similarity=0.042  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----------------HHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM-----------------PLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----------------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                      .+..+.-++..|++++|++.+..+++..|....                 +..-.+.+|...|++++|+..+.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            446677888999999999999999988876532                 245677889999999999999999887655


Q ss_pred             CcH-----HHHHHHHHHHHHHcCChHHHHHHHhccccC----C--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          184 DKS-----KIILLARAQVAAAANHPFIAAESLAKIPDI----Q--H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       184 ~~~-----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~--~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      ...     ..+...++.++...|++++|+..++.++..    .  + ...+...|+.+|...|++++|..++.+++....
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            421     123355677888899999999999988642    1  1 234667899999999999999999999987764


Q ss_pred             HhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       252 ~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ... +......++...|.++...|++++|..+|++++...
T Consensus       167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          167 KLD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             TSS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            432 234455667778999999999999999999999764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.71  E-value=2.5e-06  Score=83.47  Aligned_cols=227  Identities=13%  Similarity=0.027  Sum_probs=157.0

Q ss_pred             HHHHHHHhhhhhcCCCCChhh---------HHhhhhhHHHHHHHHHHHhCC----------hHHHHHHHHHHhccCCCch
Q 012265            5 YLIFVRIGQETLTDDNFAEDD---------IEIELAPIAVQLAYVQQLLGN----------TQEAFGAYTDIIKRNLADE   65 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee---------~~~El~~i~~qlA~v~~~~G~----------~~eA~~~y~~~l~~~p~d~   65 (467)
                      +..+...+.+.....+++++-         +.++...+|.-.+.++...|+          +++++..+..++..+|.+.
T Consensus        29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny  108 (331)
T 3dss_A           29 YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  108 (331)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH
Confidence            344455555555555666552         345566888899999988887          7899999999999999998


Q ss_pred             HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhc
Q 012265           66 SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK-MDQARELVAAL  144 (467)
Q Consensus        66 ~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~-~~~A~~~~~~l  144 (467)
                      .+..--..-+..++. ....+.+..+.++.+.++.+                -.++.++..+....|. ++++.+.++.+
T Consensus       109 ~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~dprN----------------y~AW~~R~~vl~~l~~~~~eel~~~~~~  171 (331)
T 3dss_A          109 GTWHHRCWLLSRLPE-PNWARELELCARFLEADERN----------------FHCWDYRRFVAAQAAVAPAEELAFTDSL  171 (331)
T ss_dssp             HHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHCTTC----------------HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCc-ccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            887532211212221 13445555555443333221                2367778888888888 69999999999


Q ss_pred             cccCCCCchHHHHHHHHHHhc--------------CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc----------
Q 012265          145 PDMFPDSVMPLLLQAAVLVRE--------------NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA----------  200 (467)
Q Consensus       145 ~~~~P~~~~~~ll~a~l~~~~--------------~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~----------  200 (467)
                      +..+|.+..++...+.++...              +.+++++..+.+++..+|++..++ +.+..++...          
T Consensus       172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW-~Y~r~ll~~~~~~~~~~~~~  250 (331)
T 3dss_A          172 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW-FYHRWLLGAGSGRCELSVEK  250 (331)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHSSSCGGGCCHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhccCccccchHH
Confidence            999999999998888777655              568899999999999999998876 4455555544          


Q ss_pred             -CChHHHHHHHhccccCCCChhH-HHHHHHHHH---HcCCHHHHHHHHHHHHHH
Q 012265          201 -NHPFIAAESLAKIPDIQHMPAT-VATLVALKE---RAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       201 -g~~~~A~~~L~~~~~~~~~p~~-~~~l~~ly~---~~g~~~~A~~~l~~al~~  249 (467)
                       +.+++++..+..++++.++-.. +..++.+..   ..|..+++...|.+++..
T Consensus       251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence             4578999999999887653322 112222221   356777888888888765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.71  E-value=1.1e-06  Score=86.47  Aligned_cols=168  Identities=13%  Similarity=0.013  Sum_probs=137.0

Q ss_pred             HHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc-C
Q 012265          125 VLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA-N  201 (467)
Q Consensus       125 all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~-g  201 (467)
                      ....+..+ ..++|..+++.++..+|++..++...+.++...+ .+++++..+..++..+|.+..++ .....++... +
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW-~hR~wlL~~l~~  138 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW-HHRLLLLDRISP  138 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHHHCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHhcC
Confidence            33344444 4678999999999999999999999999998888 59999999999999999998765 7788888777 7


Q ss_pred             -ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          202 -HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID--------GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       202 -~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~--------~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                       ++++++..+.++++.++ +..++.....++...|.++        +++..+++++...       +....+|...+.++
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL  211 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLR  211 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence             99999999999998875 6778888888888888777        8888888888742       22234577678888


Q ss_pred             HHCCC-------hhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265          272 LRHGR-------EEDASHLFEELVKTHGS-IEALVGL  300 (467)
Q Consensus       272 l~~g~-------~~~A~~~le~ll~~~pd-~~ala~L  300 (467)
                      ...++       ++++++.+++++..+|+ ..++..+
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl  248 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL  248 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            88886       68999999999999986 4555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.67  E-value=2.9e-07  Score=97.18  Aligned_cols=174  Identities=12%  Similarity=-0.057  Sum_probs=141.4

Q ss_pred             HHHHHHcCC-HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC----------hhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          125 VLLLLHANK-MDQARELVAALPDMFPDSVMPLLLQAAVLVRENK----------AGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       125 all~l~~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~----------~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                      .+.....|. .++|.+.++.++..+|++..++...+.++...++          +++|+..+.+++..+|.+..++ ...
T Consensus        35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW-~hR  113 (567)
T 1dce_A           35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW-HHR  113 (567)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH-HHH
Confidence            344445566 5788999999999999999999999999888877          9999999999999999998865 888


Q ss_pred             HHHHHHcC--ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          194 AQVAAAAN--HPFIAAESLAKIPDIQH-MPATVATLVALKERAG-DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       194 aql~~~~g--~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g-~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      +.++...|  ++++|+..++++++.++ +..+|...+.++...| .++++++.+.+++..       ++...++|...+.
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-------~p~n~saW~~r~~  186 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-------NFSNYSSWHYRSC  186 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-------TCCCHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------CCCCccHHHHHHH
Confidence            99999999  67999999999998775 6778888899999999 899999999888763       1222345666777


Q ss_pred             HHHHC--------------CChhHHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265          270 FKLRH--------------GREEDASHLFEELVKTHGS-IEALVGLVTTSAH  306 (467)
Q Consensus       270 ~~l~~--------------g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~  306 (467)
                      ++...              +.+++|++.+.+++..+|+ ..++..+-..+..
T Consensus       187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            77663              5578999999999999986 4566655544443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.67  E-value=2e-07  Score=96.45  Aligned_cols=131  Identities=11%  Similarity=0.005  Sum_probs=106.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHhC-----CCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HH
Q 012265          161 VLVRENKAGKAEELLGQFAEKL-----PDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VA  224 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~  224 (467)
                      .+..+|+|++|+.+++++++..     |+++..  ....||.+|..+|+|++|+.++++++++     . .+|.+   +.
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3567999999999999999753     444332  3478899999999999999999999853     2 25654   56


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .|+.+|..+|++++|+.+|++|+..+....+ +.+....++..++..+..+|.+++|..+|.++.+..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999998876543 445666677778999999999999999999987643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=2.7e-08  Score=79.84  Aligned_cols=95  Identities=14%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc------HHHHHHH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK------SKIILLA  192 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~------~~~~~l~  192 (467)
                      ..+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++      ... ++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~   83 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL-QYR   83 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH-HHH
Confidence            3567889999999999999999999999999998888888999999999999999999999999987      554 478


Q ss_pred             HHHHHHHcCChHHHHHHHhccc
Q 012265          193 RAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       193 Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      ++.++...|++++|+..++++.
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHhHhhhHhHHHHhH
Confidence            8888888888888877777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.64  E-value=4.7e-08  Score=80.16  Aligned_cols=86  Identities=12%  Similarity=-0.087  Sum_probs=73.3

Q ss_pred             hcCChhHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH
Q 012265          164 RENKAGKAEELLGQFAEK---LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA  239 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~---~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A  239 (467)
                      ..|++++|+..|+++++.   +|++... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAEC-YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            368999999999999999   4776654 58999999999999999999999998765 678888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 012265          240 AAVLDSAIKWW  250 (467)
Q Consensus       240 ~~~l~~al~~~  250 (467)
                      +..|++++...
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.62  E-value=1.6e-06  Score=91.49  Aligned_cols=138  Identities=13%  Similarity=-0.040  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhccccCCCCchHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHH
Q 012265          134 MDQARELVAALPDMFPDSVMPLLLQAAVLVREN--KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESL  210 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~--~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L  210 (467)
                      ++++...++.++..+|++..++...+-++...+  ++++|+..+.++++.+|.+..++ ...+.++...| .++++++.+
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW-~~R~~~l~~l~~~~~~el~~~  167 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW-DYRRFVAAQAAVAPAEELAFT  167 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH-HHHHHHHHHcCCChHHHHHHH
Confidence            677888899999999999999999999998888  66999999999999999998765 77888888899 899999999


Q ss_pred             hccccCCC-ChhHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          211 AKIPDIQH-MPATVATLVALKERA--------------GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       211 ~~~~~~~~-~p~~~~~l~~ly~~~--------------g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      .++++.++ +...|...+.++...              +.++++++++.+|+...    |++   .++|..++.++...+
T Consensus       168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~----P~~---~saW~y~~~ll~~~~  240 (567)
T 1dce_A          168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PND---QSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC----SSC---SHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC----CCC---ccHHHHHHHHHhcCC
Confidence            99998776 667777778777774              45688889998888652    222   245666788887888


Q ss_pred             ChhH
Q 012265          276 REED  279 (467)
Q Consensus       276 ~~~~  279 (467)
                      ++++
T Consensus       241 ~~~~  244 (567)
T 1dce_A          241 PHDV  244 (567)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            7665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.61  E-value=8.2e-08  Score=78.19  Aligned_cols=80  Identities=10%  Similarity=-0.070  Sum_probs=59.3

Q ss_pred             HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265          136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD  215 (467)
Q Consensus       136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~  215 (467)
                      .|+..+++++..+|++..+++..|.++...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35666777777777777777777777777777888887777777777777654 37777777777777777777777765


Q ss_pred             C
Q 012265          216 I  216 (467)
Q Consensus       216 ~  216 (467)
                      +
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.61  E-value=8.5e-07  Score=95.24  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----------CCc-
Q 012265          119 AIYANRVLLLLHANKMDQAR-ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----------PDK-  185 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~-~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----------P~~-  185 (467)
                      .+++..+.++...|+.+.|+ .++++++...|.+...++..+.+....|++++|..+|++++...           |.+ 
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~  423 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE  423 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence            45666666777788888886 99999999899888777888888888999999999999988752           531 


Q ss_pred             ---------HHHHHHHHHHHHHHcCChHHHHHHHhccccC-CC-ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Q 012265          186 ---------SKIILLARAQVAAAANHPFIAAESLAKIPDI-QH-MPATVATLVALKERA-GDIDGAAAVLDSAIKWWLNA  253 (467)
Q Consensus       186 ---------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-~~-~p~~~~~l~~ly~~~-g~~~~A~~~l~~al~~~~~~  253 (467)
                               ...+.+.++.+..+.|+.+.|..+|.+++.. .. .+.++...+.+..+. ++.+.|..+|+.++..+++ 
T Consensus       424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-  502 (679)
T 4e6h_A          424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT-  502 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-
T ss_pred             hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-
Confidence                     2224477788888889999999999998765 22 345555445554444 4589999999999987632 


Q ss_pred             ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC---HHHHHHHHHHh--ccCChhHHHHHHhc
Q 012265          254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS---IEALVGLVTTS--AHVDVDKAESYEKR  318 (467)
Q Consensus       254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd---~~ala~Lv~a~--~~~d~~kA~~l~~~  318 (467)
                         +.   .++...+.+....|+.+.|..+|++++...|+   ...+......+  .+.+.+.+..+.++
T Consensus       503 ---~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R  566 (679)
T 4e6h_A          503 ---DG---EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR  566 (679)
T ss_dssp             ---CH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             ---ch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               22   24556788888899999999999999988763   22222222222  56777777666544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.59  E-value=1.5e-07  Score=95.13  Aligned_cols=239  Identities=12%  Similarity=0.025  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      ..+...+..+...|++++|+..|+.+.+..+ ++.+..-.   +.+..+.++..++...+..     |+           
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~L---i~~Y~Klg~l~e~e~f~~~-----pn-----------  121 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETEL---IFALAKTNRLAELEEFING-----PN-----------  121 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHH---HHHHHHhCCHHHHHHHHcC-----Cc-----------
Confidence            3556677888999999999998888887432 32222111   1111222334443332211     11           


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                            ...+.+.+..+...|.+++|...|..+        ..+.-+|..+++.|++++|++.++++     +++..+ .
T Consensus       122 ------~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W-k  181 (449)
T 1b89_A          122 ------NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTW-K  181 (449)
T ss_dssp             ---------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHH-H
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhH-H
Confidence                  125677888999999999999999977        23556778889999999999999988     244443 6


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      .....+...|+++.|..+...+.   .+|+-...++.+|...|++++|+.+|++++..       +.....++.++|.++
T Consensus       182 ~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-------e~ah~~~ftel~il~  251 (449)
T 1b89_A          182 EVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGL-------ERAHMGMFTELAILY  251 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------TTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHH
Confidence            66788999999999988777644   35666667889999999999999999998753       233445677777777


Q ss_pred             HH--CCChhHHHHHHHHHHHhcC------CHHHHHHHHHHhccCC-hhHHHHHHhcCC
Q 012265          272 LR--HGREEDASHLFEELVKTHG------SIEALVGLVTTSAHVD-VDKAESYEKRLK  320 (467)
Q Consensus       272 l~--~g~~~~A~~~le~ll~~~p------d~~ala~Lv~a~~~~d-~~kA~~l~~~L~  320 (467)
                      .+  .|+..+.++.|...+...|      +...+..++..|.+.| .+.|....-.-|
T Consensus       252 ~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          252 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             HTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            55  3555677777765554444      2345677777775444 666654443333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.58  E-value=4e-07  Score=70.01  Aligned_cols=83  Identities=11%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      ..++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... +..++.++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Confidence            34677788888888888888888888888888888888888888888888888888888888888888765 47778877


Q ss_pred             HHcC
Q 012265          198 AAAN  201 (467)
Q Consensus       198 ~~~g  201 (467)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            6654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.55  E-value=3.3e-07  Score=74.48  Aligned_cols=83  Identities=16%  Similarity=0.046  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          169 GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       169 ~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      .+|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++.+.+ .+..+..++.+|..+|++++|+..|++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46889999999999999875 48999999999999999999999998765 56778899999999999999999999999


Q ss_pred             HHHHH
Q 012265          248 KWWLN  252 (467)
Q Consensus       248 ~~~~~  252 (467)
                      ...+.
T Consensus        81 ~~~~~   85 (115)
T 2kat_A           81 AAAQS   85 (115)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            87643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.48  E-value=1.5e-07  Score=81.69  Aligned_cols=86  Identities=14%  Similarity=0.010  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCCh----------hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265          132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKA----------GKAEELLGQFAEKLPDKSKIILLARAQVAAAAN  201 (467)
Q Consensus       132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~----------~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g  201 (467)
                      +++++|++.++.++..+|++..++...+.++...+++          ++|+..|+++++.+|++..++ +.+|.+|...|
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~-~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHhc
Confidence            4688999999999999999999998888888887765          499999999999999998764 89999998875


Q ss_pred             -----------ChHHHHHHHhccccCCC
Q 012265          202 -----------HPFIAAESLAKIPDIQH  218 (467)
Q Consensus       202 -----------~~~~A~~~L~~~~~~~~  218 (467)
                                 ++++|+..|++++++++
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                       88999999998888765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.8e-07  Score=74.90  Aligned_cols=91  Identities=11%  Similarity=-0.021  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-C------hhHHHH
Q 012265          153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M------PATVAT  225 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~------p~~~~~  225 (467)
                      ..+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ +      +.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            456678888999999999999999999999999875 48999999999999999999999998765 3      455667


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 012265          226 LVALKERAGDIDGAAAVLD  244 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~  244 (467)
                      ++.++...|+++.|+..++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHH
Confidence            7888888887776655444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.45  E-value=4.6e-07  Score=72.12  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265          147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI  216 (467)
Q Consensus       147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~  216 (467)
                      .+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT-YYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            367888888888888888888888888888888888888765 488888888888888888888887754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.43  E-value=8.5e-07  Score=68.13  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             CchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265          151 SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL  229 (467)
Q Consensus       151 ~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l  229 (467)
                      +..++...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44566778888999999999999999999999998765 48999999999999999999999987654 66777778888


Q ss_pred             HHHcC
Q 012265          230 KERAG  234 (467)
Q Consensus       230 y~~~g  234 (467)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            77654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.43  E-value=5.2e-07  Score=78.26  Aligned_cols=101  Identities=10%  Similarity=-0.049  Sum_probs=74.1

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      .+.+.+++|++.++++++.+|++...+ +.++.+++..++++.+...++                       .+++|+..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~-~n~G~~l~~l~~~~~g~~al~-----------------------~~~eAi~~   68 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNL-TRWGGVLLELSQFHSISDAKQ-----------------------MIQEAITK   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCHHHHHH-----------------------HHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHhcccchhhhhHh-----------------------HHHHHHHH
Confidence            356778999999999999999998864 778999999888764433221                       25666666


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHC-----------CChhHHHHHHHHHHHhcCCH
Q 012265          243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH-----------GREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~-----------g~~~~A~~~le~ll~~~pd~  294 (467)
                      |++|+...       +....++..+|.+|...           |++++|+..|+++++++|+.
T Consensus        69 le~AL~ld-------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           69 FEEALLID-------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHC-------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhC-------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            66666641       22233455566666655           58999999999999999874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.31  E-value=1.9e-06  Score=67.68  Aligned_cols=85  Identities=12%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ++.+..++..|++++|+..+++++..+|++.. +++..|.++...|++++|+..|++++..+|++.... ..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-AR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-HH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-HH--------
Confidence            46778888888888888888888888888887 888888888888888888888888888888875432 11        


Q ss_pred             CChHHHHHHHhcccc
Q 012265          201 NHPFIAAESLAKIPD  215 (467)
Q Consensus       201 g~~~~A~~~L~~~~~  215 (467)
                      +.+.+|+..|+++..
T Consensus        75 ~~~~~a~~~~~~~~~   89 (99)
T 2kc7_A           75 KMVMDILNFYNKDMY   89 (99)
T ss_dssp             HHHHHHHHHHCCTTH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            556777777777764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.29  E-value=3.8e-06  Score=86.85  Aligned_cols=129  Identities=9%  Similarity=0.021  Sum_probs=99.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccc-----CCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcHH-
Q 012265          122 ANRVLLLLHANKMDQARELVAALPDM-----FPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDKSK-  187 (467)
Q Consensus       122 ~n~all~l~~~~~~~A~~~~~~l~~~-----~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~-  187 (467)
                      .+.+..+...|++++|+..+++++..     .|+++.   .+-.+|.+|..+|+|++|+.+++++++..     |+++. 
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            44555667889999999998876632     355544   34467788899999999999999988742     44433 


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          188 -IILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       188 -~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                       ..+..||.+|..+|++++|+..|++++++     . .+|.+   ...+..++..++.+++|..+|.++.+..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23478999999999999999999999852     2 25654   4578889999999999999999987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.27  E-value=3.7e-06  Score=66.77  Aligned_cols=71  Identities=18%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265          181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~  252 (467)
                      .+|++... ++.+|.+|...|++++|+..|++++++++ .+.++..++.+|...|++++|+..|++++...+.
T Consensus         2 ~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFT-RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            46888775 49999999999999999999999998765 6778889999999999999999999999987543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.23  E-value=6.5e-05  Score=77.90  Aligned_cols=175  Identities=11%  Similarity=0.053  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhc---------CChhHHHHHHHHHHHh--CCCcH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRE---------NKAGKAEELLGQFAEK--LPDKS  186 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~---------~~~~~A~~~l~~~l~~--~P~~~  186 (467)
                      +..+..-.+...|++++|.++|+++...  .|+......+ ...+...         +..++|..++.++...  .|+..
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~L-i~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVL-LYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            4444455667899999999999998764  3544332211 1223332         3467899999998876  36643


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265          187 KIILLARAQVAAAANHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM  264 (467)
Q Consensus       187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll  264 (467)
                        .+..|...|.+.|++++|..+|+.+....  ++...+..+...|.+.|+.++|..+|+.+...  ...|   +. ..+
T Consensus       107 --tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~P---d~-~ty  178 (501)
T 4g26_A          107 --TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVP---EE-PEL  178 (501)
T ss_dssp             --HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCC---CH-HHH
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC---CH-HHH
Confidence              34788999999999999999999997644  45556788999999999999999999998753  1222   21 134


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTT  303 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a  303 (467)
                      ..+...+.+.|+.++|..+|+++....  |+..+...++..
T Consensus       179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~  219 (501)
T 4g26_A          179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW  219 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence            446777899999999999999998765  665444444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.13  E-value=0.00014  Score=71.57  Aligned_cols=142  Identities=12%  Similarity=0.090  Sum_probs=93.9

Q ss_pred             ccCCCCchH--HHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---cC-ChHHHHH----HHhc
Q 012265          146 DMFPDSVMP--LLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAA---AN-HPFIAAE----SLAK  212 (467)
Q Consensus       146 ~~~P~~~~~--~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~---~g-~~~~A~~----~L~~  212 (467)
                      ..-|.+..+  .++.|.-++..+.   ..+|+.+|+++++.+|+...+. -.++..|+.   .+ .......    .++.
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR-AEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            345666665  3466666655444   4689999999999999986542 334444431   11 1111111    2222


Q ss_pred             cc--cCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          213 IP--DIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       213 ~~--~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      +.  ... ..+.++..++..+...|++++|+..+++|+...       +.. ..+..+|.++...|++++|++.|++++.
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s~-~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------MSW-LNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            11  222 356667677777777899999999999999861       122 2334479999999999999999999999


Q ss_pred             hcCCHHH
Q 012265          290 THGSIEA  296 (467)
Q Consensus       290 ~~pd~~a  296 (467)
                      .+|....
T Consensus       339 L~P~~~t  345 (372)
T 3ly7_A          339 LRPGANT  345 (372)
T ss_dssp             HSCSHHH
T ss_pred             cCCCcCh
Confidence            9998654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.13  E-value=2.4e-05  Score=66.13  Aligned_cols=111  Identities=15%  Similarity=-0.010  Sum_probs=85.4

Q ss_pred             CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 012265          166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAA  241 (467)
Q Consensus       166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~  241 (467)
                      +++++|+..|+++.+.....   . . |+.+|...+.+++|+.+|+++.+.. ++.....|+.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~---a-~-lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF---G-C-LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT---H-H-HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh---h-h-HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            46778888998888876333   2 2 8888888888888999999887653 46667788888888    788999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhc
Q 012265          242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTH  291 (467)
Q Consensus       242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~  291 (467)
                      +|+++...      ++   ...+..+|.+|..    .+++++|..+|+++.+..
T Consensus        83 ~~~~Aa~~------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            99988753      11   2245567888888    789999999999988763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.09  E-value=6.2e-06  Score=64.63  Aligned_cols=85  Identities=12%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      +..|..+...|++++|+..++++++.+|++.. . ++.+|.+|...|++++|+..|++++.+.+ ++.++..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEA-YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            45677888999999999999999999999976 5 48999999999999999999999997765 3443311        


Q ss_pred             CCHHHHHHHHHHHHHH
Q 012265          234 GDIDGAAAVLDSAIKW  249 (467)
Q Consensus       234 g~~~~A~~~l~~al~~  249 (467)
                      +.+.+++..|+++...
T Consensus        75 ~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             HHHHHHHHHHCCTTHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            3455566666555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.09  E-value=2.2e-05  Score=61.78  Aligned_cols=70  Identities=16%  Similarity=0.010  Sum_probs=58.4

Q ss_pred             CCCCchHHHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265          148 FPDSVMPLLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH  218 (467)
Q Consensus       148 ~P~~~~~~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~  218 (467)
                      +|++...+...|.+++..++   .++|..+|++++..+|++.... +.+|.+++.+|+|++|+..++++++..+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~-~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAAL-SLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            57888888888887764444   6899999999999999998765 8889999999999999999999987654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.05  E-value=0.0006  Score=70.43  Aligned_cols=199  Identities=9%  Similarity=0.002  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh-c
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD-L  110 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~-~  110 (467)
                      .+|+..|..+..+|+.++|..+|++++.. |.+..+.+...    .+....   ..+..+.....       ..+... .
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~----~~~e~~---~~~~~l~~~~~-------~~~~~~~~  278 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG----LVMDEE---AVYGDLKRKYS-------MGEAESAE  278 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH----HHTTCT---HHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH----hhcchh---HHHHHHHHHHH-------hhccchhh
Confidence            56888888899999999999999999999 98765554211    111111   11222211100       000000 0


Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      .........++.+.+.+....+.++.|+.+++.+  ..|. ....++-.|.+-...+ +.+.|..+++.+++.+|+++..
T Consensus       279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence            0012233456777788877888899999999998  3454 2233333454444444 6999999999999999998765


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL  251 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~  251 (467)
                      + +.+++.....|+.+.|..+|+++..   ...++.....+-...|+.+.+..++++++....
T Consensus       357 ~-~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          357 K-EEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             H-HHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            4 6778888999999999999999853   456777777777788999999999999887654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.05  E-value=0.0001  Score=76.39  Aligned_cols=152  Identities=14%  Similarity=0.053  Sum_probs=115.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHcCC---------hHHHHHHHhccccCC--CChhHHHHH
Q 012265          160 AVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAANH---------PFIAAESLAKIPDIQ--HMPATVATL  226 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~g~---------~~~A~~~L~~~~~~~--~~p~~~~~l  226 (467)
                      ..+.+.|+.++|+.++.++.+.  .|+...  +..|..++...+.         ++.|..+|+.+....  ++..++..+
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t--yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l  111 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYH--YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG  111 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4567999999999999999886  355432  2455556655443         688999999987543  455678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHh
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTS  304 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~  304 (467)
                      +..|.+.|+.++|..+|+++...  ...   ++.. .+..+...+.+.|+.++|..+|+++.+..  ||...+..|+.++
T Consensus       112 I~~~~~~g~~~~A~~l~~~M~~~--g~~---Pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          112 ARLAVAKDDPEMAFDMVKQMKAF--GIQ---PRLR-SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHT--TCC---CCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHc--CCC---Cccc-eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999999999999998752  111   2222 24445667889999999999999999875  8888888899988


Q ss_pred             c-cCChhHHHHHHhcC
Q 012265          305 A-HVDVDKAESYEKRL  319 (467)
Q Consensus       305 ~-~~d~~kA~~l~~~L  319 (467)
                      . ..+.++|..++..+
T Consensus       186 ~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          186 MDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHH
Confidence            5 45689998887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.04  E-value=1.6e-05  Score=80.72  Aligned_cols=93  Identities=8%  Similarity=-0.013  Sum_probs=77.9

Q ss_pred             HcCChHHHHHHHhccccC-----C-CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Q 012265          199 AANHPFIAAESLAKIPDI-----Q-HMPAT---VATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAA  268 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la  268 (467)
                      ..|+|++|+..|++++++     . .+|.+   +..|+.+|..+|++++|+.++++++..+....+ +.+.....+..+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999988752     2 25554   567899999999999999999999999876543 4567777888999


Q ss_pred             HHHHHCCChhHHHHHHHHHHHhc
Q 012265          269 SFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       269 ~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+|..+|++++|..+|++++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHH
Confidence            99999999999999999999864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.96  E-value=7.3e-05  Score=75.91  Aligned_cols=97  Identities=8%  Similarity=-0.099  Sum_probs=80.6

Q ss_pred             HHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-cCCchHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAAAVLDSAIKWWLNAM-TEDNKLSVIM  264 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~~ll  264 (467)
                      .-+..+|+|++|+..+++++++.      .+|.   ++..|+.+|..+|++++|+.++++++..+.... ++.+.....+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            34457899999999999987532      2554   456789999999999999999999999887654 3456777788


Q ss_pred             HHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          265 QEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       265 ~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..+|.+|..+|++++|..+|+++++..
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999999864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=7.8e-05  Score=75.70  Aligned_cols=111  Identities=11%  Similarity=-0.070  Sum_probs=84.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHhC-----CCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HH
Q 012265          161 VLVRENKAGKAEELLGQFAEKL-----PDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VA  224 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~  224 (467)
                      -+..+|++++|+.+++++++..     |+++..  ....||.+|..+|+|++|+..+++++++     . .+|.+   +.
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3457899999999999999753     444432  3467899999999999999999999853     2 26654   56


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Q 012265          225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAASFK  271 (467)
Q Consensus       225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la~~~  271 (467)
                      .|+.+|..+|++++|+.+|++|+..+....+ +.+....++..++.++
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            7999999999999999999999998866543 3344444444455444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.92  E-value=8.9e-05  Score=62.58  Aligned_cols=109  Identities=10%  Similarity=-0.019  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHH
Q 012265          133 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAE  208 (467)
Q Consensus       133 ~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~  208 (467)
                      ++++|...+++.....  +..+.  .+.++...+..++|+..|+++.+.  .+... .+.|+.+|..    .+++++|+.
T Consensus        10 d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a-~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           10 DLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNG-CRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHH-HHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHH-HHHHHHHHHcCCCCCccHHHHHH
Confidence            4677888888777654  33444  777787888889999999999987  45554 4899999999    899999999


Q ss_pred             HHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012265          209 SLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       209 ~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~  249 (467)
                      +|+++.+.. ++.....|+.+|..    .+++++|+.+|+++...
T Consensus        83 ~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           83 YYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999998764 56677789999999    89999999999999863

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.89  E-value=5.9e-05  Score=76.59  Aligned_cols=93  Identities=14%  Similarity=-0.068  Sum_probs=75.4

Q ss_pred             hcCChhHHHHHHHHHHHh-----CCCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HHHHH
Q 012265          164 RENKAGKAEELLGQFAEK-----LPDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VATLV  227 (467)
Q Consensus       164 ~~~~~~~A~~~l~~~l~~-----~P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~  227 (467)
                      ..|+|++|+.+++++++.     .|+++..  ....||.+|..+|+|++|+.++++++++     . .+|.+   +..|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467899999999999984     3555432  2367899999999999999999999853     2 26654   67899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265          228 ALKERAGDIDGAAAVLDSAIKWWLNAMTE  256 (467)
Q Consensus       228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~  256 (467)
                      .+|..+|++++|+.+|++|+..+....+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~  418 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGK  418 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999988665443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.77  E-value=0.00016  Score=71.15  Aligned_cols=127  Identities=16%  Similarity=0.049  Sum_probs=91.6

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHh---cC-ChhHHHH----HHHH--HHHhCCCcHHH
Q 012265          122 ANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVR---EN-KAGKAEE----LLGQ--FAEKLPDKSKI  188 (467)
Q Consensus       122 ~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~---~~-~~~~A~~----~l~~--~l~~~P~~~~~  188 (467)
                      |-++.-++..+.   +.+|+.+|+++++.+|++..++...+..++.   .+ .......    .+..  .+...|.++..
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~  279 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII  279 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence            345555665544   6899999999999999998876655544431   11 1111111    1221  12345777654


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          189 ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                       +..++.+++..|++++|+..+++++.++++...+..++.++...|++++|+..|++|+..
T Consensus       280 -~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          280 -YQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             -HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             477788888899999999999999988766656678899999999999999999999975

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=4.5e-05  Score=59.97  Aligned_cols=67  Identities=15%  Similarity=0.034  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          119 AIYANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       119 ~l~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                      .+++..+.+++..+.   .++|...+++++..+|+++.+.++.|.++...|+|++|+..++++++..|++
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            456667777766555   7999999999999999999999999999999999999999999999999984

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.68  E-value=0.00057  Score=54.47  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       220 p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                      +.-...+|..+...|++..|+..|+.|+..+............++..+|..+.+.|+++.|..+++++++..|+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            334457888888999999999999999887643221123345677789999999999999999999999999874

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.67  E-value=0.00092  Score=63.32  Aligned_cols=106  Identities=16%  Similarity=0.044  Sum_probs=83.7

Q ss_pred             hccccCCCCchHHHHHHHHHH---hc--CC------hhHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHc-----CChH
Q 012265          143 ALPDMFPDSVMPLLLQAAVLV---RE--NK------AGKAEELLGQFAEKLPD--KSKIILLARAQVAAAA-----NHPF  204 (467)
Q Consensus       143 ~l~~~~P~~~~~~ll~a~l~~---~~--~~------~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~~~~-----g~~~  204 (467)
                      .+...+|+++.+++-.|.++.   ..  +.      ..+|..+++++++.+|+  +. .++..|+.+|...     |+.+
T Consensus       143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G-sA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG-AVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH-HHHHHHHHHHHHSCTTTTCCHH
T ss_pred             HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHhCCCccCCCHH
Confidence            345567888887766655442   22  33      35788999999999999  43 3568999999984     9999


Q ss_pred             HHHHHHhccccCCC--ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 012265          205 IAAESLAKIPDIQH--MPATVATLVALKER-AGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       205 ~A~~~L~~~~~~~~--~p~~~~~l~~ly~~-~g~~~~A~~~l~~al~~  249 (467)
                      +|..+|++++.+.+  +.......+..|.. +|++++|..+|++++..
T Consensus       222 kA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          222 KAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            99999999998876  37777788888877 59999999999999974

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.63  E-value=0.018  Score=59.34  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=36.6

Q ss_pred             HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265          136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS  186 (467)
Q Consensus       136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~  186 (467)
                      .+..++++++...|.+...++..+..+...|+.++|..+|++++.. |.+.
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence            3556777777777777777777777777777777888888877777 7764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.53  E-value=0.00032  Score=60.54  Aligned_cols=112  Identities=17%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHh------CCC
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDM---FPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEK------LPD  184 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~------~P~  184 (467)
                      ..+.....++..+.|+.|+-+.+-++..   +|+.      ....++.|..++.+++|..|+..|++++..      .|.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3455566677788888888777765543   3332      124567888899999999999999997642      121


Q ss_pred             ------------------cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHH
Q 012265          185 ------------------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE  231 (467)
Q Consensus       185 ------------------~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~  231 (467)
                                        ....+++.+|..|++.|++++|+.+|+.+..-...|.+...|+.+|.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence                              01136789999999999999999999999765568888888888873

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.40  E-value=0.00064  Score=58.19  Aligned_cols=83  Identities=13%  Similarity=-0.042  Sum_probs=50.0

Q ss_pred             HHHHHHHhccccCCCCchHHHHHHHHHHhcC---ChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHh
Q 012265          136 QARELVAALPDMFPDSVMPLLLQAAVLVREN---KAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLA  211 (467)
Q Consensus       136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~---~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~  211 (467)
                      .+++.+.+.....|.+....+-.|-.+++.+   +..+++.+|+.+++.. |++...+.|.||-.|.+.|+|++|...++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444455444455556666666666666665   4446777777777766 52222233666777777777777777777


Q ss_pred             ccccCCC
Q 012265          212 KIPDIQH  218 (467)
Q Consensus       212 ~~~~~~~  218 (467)
                      .++++++
T Consensus        96 ~lL~ieP  102 (152)
T 1pc2_A           96 GLLQTEP  102 (152)
T ss_dssp             HHHHHCT
T ss_pred             HHHhcCC
Confidence            7766554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.37  E-value=0.0002  Score=67.78  Aligned_cols=106  Identities=12%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhccccCCCC--chHHHHHHHHHHh-----cCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHc-CChH
Q 012265          134 MDQARELVAALPDMFPDS--VMPLLLQAAVLVR-----ENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAA-NHPF  204 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~-----~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~-g~~~  204 (467)
                      ...|...++++++.+|+.  ..++.+.+.+|..     -|+.++|..+|+++++.+|+. ... ++.+|+.++.. |+++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~-~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH-HITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH-HHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCCHH
Confidence            378888999999999994  5578899999988     599999999999999999975 654 58899999885 9999


Q ss_pred             HHHHHHhccccCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265          205 IAAESLAKIPDIQHM--PATVATLVALKERAGDIDGAAAVLDSA  246 (467)
Q Consensus       205 ~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~g~~~~A~~~l~~a  246 (467)
                      +|...|++++..++.  |+.  .++...    +-.+|..+|.++
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~--~lan~~----~q~eA~~LL~~~  295 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHN--KLLVIL----SQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSC--HHHHHH----HHHHHHHHHHTH
T ss_pred             HHHHHHHHHHcCCCCCCCCh--hHHHHH----HHHHHHHHHHHh
Confidence            999999999987664  653  223322    234565665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.01  E-value=0.2  Score=49.73  Aligned_cols=29  Identities=10%  Similarity=-0.105  Sum_probs=24.1

Q ss_pred             hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265           32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR   60 (467)
Q Consensus        32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~   60 (467)
                      ...++||.+|..+|+.++-..++..+...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   48 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPF   48 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44588999999999999999988876543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.98  E-value=0.0044  Score=52.96  Aligned_cols=39  Identities=10%  Similarity=-0.026  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH
Q 012265          118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL  156 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l  156 (467)
                      ....|+.++.++..++|+.|++.++.+++..|++..+.-
T Consensus        71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            345556666666666666666666666666665555433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.65  E-value=0.0077  Score=47.72  Aligned_cols=69  Identities=12%  Similarity=0.009  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCC-------CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFP-------DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P-------~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      -.+..+..++..++++.|...++.++...+       ....++...|..+.+.|++++|+..+++++...|++...
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            456778888888888888888887765431       223345566777778888888888888888888877553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.62  E-value=0.14  Score=50.81  Aligned_cols=173  Identities=12%  Similarity=0.004  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCC---CchHHHHHHHHH---HhcCChhHHHHHHHHHHHhCCCc-HHHHH-
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPD---SVMPLLLQAAVL---VRENKAGKAEELLGQFAEKLPDK-SKIIL-  190 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~---~~~~~ll~a~l~---~~~~~~~~A~~~l~~~l~~~P~~-~~~~~-  190 (467)
                      ...+..+.+|...|+.++-.+++..+....+.   .-.+-++...+-   ...+..+.=+.++.++++-.-++ -..++ 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999998888876544433   333333322221   11344455566666666421111 11111 


Q ss_pred             -H--HHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265          191 -L--ARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL  260 (467)
Q Consensus       191 -l--~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~  260 (467)
                       +  -||.+|+..|+|.+|..++.++..    ++.   .-++...-..+|...+++..+...|.+|...-.. ...++..
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i  178 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHH
Confidence             2  689999999999999999988863    222   2234555678899999999999999998765432 2233433


Q ss_pred             HHHH-HHHHHHHH-HCCChhHHHHHHHHHHHhcC
Q 012265          261 SVIM-QEAASFKL-RHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       261 ~~ll-~~la~~~l-~~g~~~~A~~~le~ll~~~p  292 (467)
                      ...+ ...|.+++ ..++|..|...|-+++..+.
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            3333 33466778 79999999999988886653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.57  E-value=0.24  Score=42.64  Aligned_cols=160  Identities=13%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH----h-------------CCCcHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE----K-------------LPDKSK  187 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~----~-------------~P~~~~  187 (467)
                      ...++.+|.+..|.-.+..+     +........+..+.+.+++..|+..++.+++    .             +|.+.+
T Consensus        40 ~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE  114 (242)
T 3kae_A           40 SIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE  114 (242)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred             hhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence            56677788888887777654     2345567788888899999999999999983    1             256666


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH-------------cCC-------HHHHHHHHH---
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER-------------AGD-------IDGAAAVLD---  244 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~-------------~g~-------~~~A~~~l~---  244 (467)
                      .....+|.++.+.|+.++|+..+..-....+-...+-.+  +|..             .|+       +.....+-+   
T Consensus       115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl--iyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s  192 (242)
T 3kae_A          115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL--LLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLS  192 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH--HHTTCCCCCC-----------CHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH--HhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhcc
Confidence            666788999999999999999887543211100001000  0100             011       111111111   


Q ss_pred             -HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          245 -SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       245 -~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                       +.+..|.+..|+-..+.  ....+..++..|-.++...+|..+...+|-
T Consensus       193 ~~~ikkY~n~iPGiGSY~--va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          193 PSLVKKYMEHVPGIGSYF--ISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHTSTTTHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCCchhHH--HHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence             34455555444322222  223467788999999999999999988873

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.42  E-value=0.0099  Score=48.99  Aligned_cols=69  Identities=13%  Similarity=0.032  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHhccccC-C-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265          119 AIYANRVLLLLHANKMDQ---ARELVAALPDMF-P-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK  187 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~---A~~~~~~l~~~~-P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~  187 (467)
                      ...||.|..++++.+...   ++.+++.+.+.. | ......++.|.-+++.|+|.+|.+.++.+|+..|++..
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            345555555555555433   555555555444 3 22334444555555555555555555555555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.34  E-value=0.0098  Score=48.99  Aligned_cols=92  Identities=11%  Similarity=-0.099  Sum_probs=68.6

Q ss_pred             HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhH---HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265          135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK---AEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESL  210 (467)
Q Consensus       135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~---A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L  210 (467)
                      ..+++.+.......+.+....+-.|-.+++.....+   ++.+|+.++... |.......+.||-.+.+.|+|++|...+
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344555555545566777788888888888877766   999999999887 6433445588999999999999999999


Q ss_pred             hccccCCC-ChhHHHHH
Q 012265          211 AKIPDIQH-MPATVATL  226 (467)
Q Consensus       211 ~~~~~~~~-~p~~~~~l  226 (467)
                      +.++++.+ ++.+..+.
T Consensus        98 ~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHH
Confidence            99998776 55554433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.16  Score=44.28  Aligned_cols=128  Identities=16%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +.+..|+++.|.++++.+     ++... +-.||...+.+|+++-|..+|.++.+       +..+..||.-.|+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~-Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSIT-WERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHH-HHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHH-HHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHH
Confidence            446789999998887765     33333 47899999999999999999999864       335567788889988766


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcC
Q 012265          241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL  319 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L  319 (467)
                      .+-+.+...      ++  +..    ....++.+|++++++++|.+.-..     ..+.+ .|-++...+.|+++...+
T Consensus        81 kla~iA~~~------g~--~n~----af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~-~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           81 KMQNIAQTR------ED--FGS----MLLNTFYNNSTKERSSIFAEGGSL-----PLAYA-VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHT------TC--HHH----HHHHHHHHTCHHHHHHHHHHTTCH-----HHHHH-HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHC------cc--HHH----HHHHHHHcCCHHHHHHHHHHCCCh-----HHHHH-HHHHcCcHHHHHHHHHHh
Confidence            555554321      11  111    244567899999999999654322     12222 234455567777776554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.82  E-value=0.027  Score=48.52  Aligned_cols=94  Identities=12%  Similarity=0.016  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCc--H---HHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---
Q 012265          154 PLLLQAAVLVRENKAGKAEELLGQFAEK---LPDK--S---KIILLARAQVAAAANHPFIAAESLAKIPDIQ----H---  218 (467)
Q Consensus       154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~---~P~~--~---~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~---  218 (467)
                      +++-....++..+.|+.|+-+..-++..   +|+-  +   -.+.+.+|+++..+|+|..|...|++++...    .   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4455566678899999998777765543   3431  1   1134789999999999999999999975311    0   


Q ss_pred             ----------Ch---------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          219 ----------MP---------ATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       219 ----------~p---------~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                                .|         ++.+.++.+|...+++++|+.+|+..-
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence                      11         466789999999999999999998643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.64  E-value=0.054  Score=45.40  Aligned_cols=71  Identities=7%  Similarity=-0.002  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHhccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          118 EAIYANRVLLLLHANKM---DQARELVAALPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       118 ~~l~~n~all~l~~~~~---~~A~~~~~~l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      ....||.+..++.+.+.   ..++.+++.+....|.. .+..++.|.-+++.|+|.+|.+.++.+|+..|++..+
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            35688999999998874   46778888888888854 4455677777899999999999999999999998654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.54  E-value=0.044  Score=45.32  Aligned_cols=70  Identities=7%  Similarity=0.011  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHhccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          119 AIYANRVLLLLHANKM---DQARELVAALPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       119 ~l~~n~all~l~~~~~---~~A~~~~~~l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      ...||.|..++++...   ..++.+++.+.+..|.. .+.+++.|.-+.+.|+|.+|.+.+..+++..|++..+
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            4678889988888774   46778888888777743 4556677777888999999999999999999988654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.30  E-value=0.5  Score=50.76  Aligned_cols=49  Identities=16%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHH
Q 012265          125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQF  178 (467)
Q Consensus       125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~  178 (467)
                      ..+.+..|+++.|.++...+     ++...+...|..+++.++++.|+.+|.++
T Consensus       659 f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44567889999998887655     34566778888888999999999988865

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.18  E-value=0.28  Score=45.69  Aligned_cols=122  Identities=11%  Similarity=0.024  Sum_probs=76.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      -+++.|..++|+..+..-++.+|.+.. ++..|.|+++-.|+++.|...|+.+..+++....   .+.+|.+.=+-+   
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~-~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~---~a~~yr~lI~aE---   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDAS-LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLVKAA---   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHHH---
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHH---
Confidence            356788888999999999999998876 4688899999999999999998888766442221   122232110000   


Q ss_pred             HHHHHHHHHHHH-----hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          241 AVLDSAIKWWLN-----AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       241 ~~l~~al~~~~~-----~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                       .++..  .+..     ...+++.....+.. +......|+.++|..+-.++++.-|.
T Consensus        79 -~~R~~--vfaG~~~P~~~g~~~~w~~~ll~-Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           79 -QARKD--FAQGAATAKVLGENEELTKSLVS-FNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             -HHHHH--HTTSCCCEECCCSCHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             -HHHHH--HHcCCCCCCCCCCCHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence             11111  1111     01122233333443 66667789999999999999887653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.08  E-value=0.26  Score=45.87  Aligned_cols=118  Identities=14%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHH
Q 012265          127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA  206 (467)
Q Consensus       127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A  206 (467)
                      -++..|.+++++..+..-++.+|.+.....+...+|+-.|+|+.|.+-|+-+...+|+....     +++|...=+-+.+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~-----a~~yr~lI~aE~~   80 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG-----ASQLRHLVKAAQA   80 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH-----HHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999986543     3333211011111


Q ss_pred             HHH-Hhcc--ccC-CCChhHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 012265          207 AES-LAKI--PDI-QHMPATVATL--VALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       207 ~~~-L~~~--~~~-~~~p~~~~~l--~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ... |..-  ..+ ...+..+..+  +......|+.++|..+-..|.+.
T Consensus        81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence            111 1111  011 1123333333  33344569999998888887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.53  E-value=0.25  Score=53.20  Aligned_cols=24  Identities=13%  Similarity=0.005  Sum_probs=12.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccc
Q 012265          191 LARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      -.||++++.+|+++.|+.+|.++.
T Consensus       685 ~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          685 RALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcc
Confidence            445555555555555555555543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.43  E-value=0.25  Score=49.70  Aligned_cols=99  Identities=13%  Similarity=-0.037  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHhcccc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH-HHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPD----IQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-VIMQ  265 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~----~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-~ll~  265 (467)
                      +.+|.+|...|++++|..+|.++.+    ..+.-.++..++.++...+++..+...+.++.......  +++... .+..
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~d~~~~~~lk~  212 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--GDWERRNRYKT  212 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CCTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--CCHHHHHHHHH
Confidence            4566666666666666666666543    12233445555666666666666666666665443221  122211 1222


Q ss_pred             HHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          266 EAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       266 ~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ..|.+++..++|.+|...|-+++...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccC
Confidence            23445556666766666666665544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.38  E-value=0.17  Score=51.22  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH-H
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL-S  261 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~-~  261 (467)
                      ...||.+|...|++.+|..+|..+..    ...   .-.++...+.+|...+++..|...+.++....-... .++.+ .
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~  218 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHH
Confidence            36789999999999999999988752    111   234566778899999999999999998865432222 22222 2


Q ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          262 VIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      .+....|.++...++|.+|...|.+++...
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            234445788888999999999999998754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.12  E-value=0.93  Score=39.44  Aligned_cols=104  Identities=9%  Similarity=0.019  Sum_probs=70.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      +.-+.+..|+++.|.++++.+     ++..-+--.|...+..|+++=|+.+|++.     .+..    .|..+|...|+.
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~~----~L~~Ly~~tg~~   76 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ-----HSFD----KLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCHH----HHHHHHHHHTCH
T ss_pred             HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCHH----HHHHHHHHhCCH
Confidence            456778999999999998876     45566778888889999999999998864     3322    234477788888


Q ss_pred             HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265          204 FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       204 ~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                      +.-...-+.+.. +   +-+...+..+..+|++++++++|.+
T Consensus        77 e~L~kla~iA~~-~---g~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           77 NKLSKMQNIAQT-R---EDFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHH-T---TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-C---ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            664333222221 1   1123344556677888888887765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.08  E-value=0.57  Score=39.61  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=48.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      .+++...++.+.|..+|+.++...       ..+.-+|...|.|-.++|+...|..++.+++...|.
T Consensus        67 YA~~~ei~D~d~aR~vy~~a~~~h-------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           67 FAELKAIQEPDDARDYFQMARANC-------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HHHHHHHHCGGGCHHHHHHHHHHC-------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            344566789999999999998751       223567777899999999999999999999998764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.88  E-value=1  Score=37.68  Aligned_cols=73  Identities=7%  Similarity=-0.004  Sum_probs=58.4

Q ss_pred             CchHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          151 SVMPLLLQAAVLVRENKAG---KAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       151 ~~~~~ll~a~l~~~~~~~~---~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      +....+-.|-.+++..+..   +++.+|+.++...|+......+.||--+.+.|+|++|....+.+++..+ +..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            4455666677777766554   7899999999999976666668999999999999999999999998876 44443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.50  E-value=0.17  Score=54.35  Aligned_cols=115  Identities=10%  Similarity=0.030  Sum_probs=79.8

Q ss_pred             cCC-HHHHHHHHHhccccCCCCchHHHHHHHHH--HhcC-ChhHHHHHHHHHHHh--------CCCcHH---------HH
Q 012265          131 ANK-MDQARELVAALPDMFPDSVMPLLLQAAVL--VREN-KAGKAEELLGQFAEK--------LPDKSK---------II  189 (467)
Q Consensus       131 ~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~--~~~~-~~~~A~~~l~~~l~~--------~P~~~~---------~~  189 (467)
                      +++ ++.|...++++...+|..... +..+.+.  ...+ +--+|++++.+.++.        .+.+..         .+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            555 688999999999999865432 2222222  2222 233788888777642        122211         12


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265          190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSA  246 (467)
Q Consensus       190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~a  246 (467)
                      ...-|..++..|+|+-|+.+-++++...+ ....|..|+.+|..+|+++.|+-.|+..
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            23447778899999999999999987655 5678999999999999999998877754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.42  E-value=0.62  Score=38.45  Aligned_cols=71  Identities=7%  Similarity=-0.033  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          153 MPLLLQAAVLVRENKA---GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~---~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      ...+-.|-.+++..+.   .+++.+|+.++...|+......+.||--+.+.|+|+.|....+.++++.+ +..+.
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            4455566566666555   47899999999999976555568999999999999999999999998876 44333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.39  E-value=0.65  Score=51.35  Aligned_cols=57  Identities=14%  Similarity=-0.043  Sum_probs=29.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHhcccc-----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPD-----IQHMPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~-----~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      ..|...|++.|+.++|..+|..+.+     ..++.-.+..|..-|.+.|+.++|..+|+++.
T Consensus       131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~  192 (1134)
T 3spa_A          131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK  192 (1134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4445555555555555555544321     12233344555555555555555555555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.05  E-value=1.1  Score=48.12  Aligned_cols=59  Identities=15%  Similarity=0.035  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      ..++|..++..|+++-|+.+-++++..-|.+-..+ +.||.+|+..|+|+.|+-+|..+.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW-~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESW-YNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHH-HHHHHHHHHhccHHHHHHHHhcCC
Confidence            44667777788899999999999999999887765 888999999999999999988874

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.99  E-value=3.1  Score=40.05  Aligned_cols=110  Identities=11%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHc
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERA  233 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~  233 (467)
                      .-|++.++|++|+++|...               |..+++.|++..|.++-.-+++      +..+......|+.++...
T Consensus        43 ~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~  107 (336)
T 3lpz_A           43 ARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF  107 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             HHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            3456677777777765432               2223333444444333222221      122334444555555544


Q ss_pred             CCHH-HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHH
Q 012265          234 GDID-GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF  284 (467)
Q Consensus       234 g~~~-~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~l  284 (467)
                      ...+ .=..++++++.|-............++..+|..+.+.+++.+|...|
T Consensus       108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4322 23456777887654422111222345666899999999999888776

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.86  E-value=1.6  Score=36.86  Aligned_cols=60  Identities=12%  Similarity=0.050  Sum_probs=45.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChh
Q 012265          161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA  221 (467)
Q Consensus       161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~  221 (467)
                      ++...++.++|..+|+.++..+..-.. +++..|+.-+++|+...|..+|.+++...+.|.
T Consensus        69 ~~~ei~D~d~aR~vy~~a~~~hKkFAK-iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           69 ELKAIQEPDDARDYFQMARANCKKFAF-VHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHHHHCGGGCHHHHHHHHHHCTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            444557888888888888877766643 458888888888888888888888887665554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.80  E-value=3.3  Score=41.59  Aligned_cols=153  Identities=12%  Similarity=0.050  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHh-CC-CcH---HHHHHHHHHHHHHcCChHHHHHHHhccc----cCCCChh----
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEK-LP-DKS---KIILLARAQVAAAANHPFIAAESLAKIP----DIQHMPA----  221 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P-~~~---~~~~l~Laql~~~~g~~~~A~~~L~~~~----~~~~~p~----  221 (467)
                      ...+|.++...|++.+|.+++..+... .- .+.   ..+.+...++|+..+++..|...+.++.    .....|.    
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            356788899999999999999987642 21 111   1234777899999999999999999874    2222343    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHH
Q 012265          222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVG  299 (467)
Q Consensus       222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~  299 (467)
                      +....+.++...++|.+|...|..+...+.... +......++..+..+.+-.+....-..++..+....  ++..++..
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~-d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~  298 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS-DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES  298 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence            345678888999999999999999887653321 112222333333333333333333344444444433  23445555


Q ss_pred             HHHHhccCC
Q 012265          300 LVTTSAHVD  308 (467)
Q Consensus       300 Lv~a~~~~d  308 (467)
                      |+.+|...+
T Consensus       299 L~k~f~~~~  307 (445)
T 4b4t_P          299 LVKLFTTNE  307 (445)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhch
Confidence            666664433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.61  E-value=3.2  Score=47.05  Aligned_cols=136  Identities=14%  Similarity=0.039  Sum_probs=92.1

Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-C-----------------------C
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-I-----------------------Q  217 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~-----------------------~  217 (467)
                      +...+.++-|..    ++.-.|.++.. .+.+|.+|+..|++++|..+|+++.. +                       .
T Consensus       822 l~~~~~~~~~~~----l~~~~~~~~~~-~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~  896 (1139)
T 4fhn_B          822 LFLFKQYNACMQ----LIGWLNSDPIA-VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN  896 (1139)
T ss_dssp             HHHHSCTTHHHH----HHHHSCCCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred             HHHhhhHHHHHH----HhhhccCCcHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence            455566654433    44455666654 48999999999999999999998831 0                       0


Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH
Q 012265          218 HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV-IMQEAASFKLRHGREEDASHLFEELVKTHGSIEA  296 (467)
Q Consensus       218 ~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~-ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a  296 (467)
                      ..+.++..++.++.+.|.++.++.+-..|++.   ..++++.... +|..+-..++..|+|++|...+-..-...--.+.
T Consensus       897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~---~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          897 LLSCYYLHLSKKLFEESAYIDALEFSLLADAS---KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence            02345667889999999999999999988875   2233333332 5555666788999999998777543221112466


Q ss_pred             HHHHHHHhc
Q 012265          297 LVGLVTTSA  305 (467)
Q Consensus       297 la~Lv~a~~  305 (467)
                      +..||....
T Consensus       974 Lr~LV~~lc  982 (1139)
T 4fhn_B          974 LLDFVNQLT  982 (1139)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.49  E-value=0.58  Score=51.75  Aligned_cols=100  Identities=11%  Similarity=-0.025  Sum_probs=66.1

Q ss_pred             HHHH-HHHHHHcCCHHHHHHHHHhccc-----cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHH
Q 012265          121 YANR-VLLLLHANKMDQARELVAALPD-----MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLA  192 (467)
Q Consensus       121 ~~n~-all~l~~~~~~~A~~~~~~l~~-----~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~  192 (467)
                      .||. .-.++..|++++|..++..+..     ..|+.... -....-+++.|+.++|.+++.++.+.  .|+...  +..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT--Ynt  205 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS--YAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH--HHH
Confidence            3443 3356678888888888876542     34554433 23334467888888888888888775  366543  356


Q ss_pred             HHHHHHHcCCh-HHHHHHHhccccCCCChhHH
Q 012265          193 RAQVAAAANHP-FIAAESLAKIPDIQHMPATV  223 (467)
Q Consensus       193 Laql~~~~g~~-~~A~~~L~~~~~~~~~p~~~  223 (467)
                      +...+.+.|+. ++|..+|+.+.+-...|..+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v  237 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL  237 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence            66677788874 67788888887655566654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.43  E-value=2.4  Score=48.02  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccC--------------------CC--CchHHHHH-HHHHHhcCChhHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMF--------------------PD--SVMPLLLQ-AAVLVRENKAGKAEELLG  176 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~--------------------P~--~~~~~ll~-a~l~~~~~~~~~A~~~l~  176 (467)
                      ..|-.|++++..|++++|...|.++..-.                    +.  ....+++. +.++.+.+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45889999999999999999998764211                    10  01122333 345677899999999988


Q ss_pred             HHHHhCC-CcHH---HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH--------HHH
Q 012265          177 QFAEKLP-DKSK---IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA--------VLD  244 (467)
Q Consensus       177 ~~l~~~P-~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~--------~l~  244 (467)
                      .+++.-+ ++..   .++..+...++..|+|++|...|-...+....-..+..|+..++..|..+.-+.        .++
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence            8887654 3322   133556777889999999999998776544334455555555555554433221        122


Q ss_pred             HHHHHH-HHh--ccCCchHHHHHHHHHHHHHHCCChhH-HHHHHHHHHHh
Q 012265          245 SAIKWW-LNA--MTEDNKLSVIMQEAASFKLRHGREED-ASHLFEELVKT  290 (467)
Q Consensus       245 ~al~~~-~~~--~~~~~~~~~ll~~la~~~l~~g~~~~-A~~~le~ll~~  290 (467)
                      ..+.+- ++.  ....+.+-.+   +=.+++..|++.. |..+|+.+.+.
T Consensus      1004 ~IL~~kAr~~~~~~~~p~Yy~i---LYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B         1004 NLLERKAFQMINVESQPCWYNI---LFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHH---HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccCCCHHHH---hHhhhhccCChHHHHHHHHHHHHHh
Confidence            222211 011  1112333333   3456777888875 55688888765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.01  E-value=2.3  Score=41.95  Aligned_cols=129  Identities=11%  Similarity=0.000  Sum_probs=78.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAE-ELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~-~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      .+.-....|+.+.|...+..++..+-+....-+.       ...|-.+. ..|++..      ... ...++..++..|+
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~~------~~a-~~~~~~~~l~~g~  186 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVEDK------VLA-HTAKAEAEIACGR  186 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHHH------HHH-HHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHHH------HHH-HHHHHHHHHHCCC
Confidence            3444556788899999999888777554321110       11121111 1111111      112 2566778888888


Q ss_pred             hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHH
Q 012265          203 PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT--EDNKLSVIMQE  266 (467)
Q Consensus       203 ~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~--~~~~~~~ll~~  266 (467)
                      +.+|+..+..++..++ +..++..+..+|...|+..+|+..|+.....+....+  ..+.+..++..
T Consensus       187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            8888888888876654 5567778888888888888888888887765544221  23444444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.31  E-value=11  Score=36.91  Aligned_cols=54  Identities=7%  Similarity=0.004  Sum_probs=37.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      ..+...|++.+|+..+..++..+|-+... +..|..+|...|+..+|+.+|+.+-
T Consensus       179 ~~~l~~g~~~~a~~~l~~~~~~~P~~E~~-~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          179 EAEIACGRASAVIAELEALTFEHPYREPL-WTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456677777777777777777776654 3666677777777777777777763

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.12  E-value=7.1  Score=38.89  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---CCChhHH----
Q 012265          153 MPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---QHMPATV----  223 (467)
Q Consensus       153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~~p~~~----  223 (467)
                      .+..-+|..+...|++++|.++|.++....  ++....+.+...++++..+++..+...+.++..+   ..++...    
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            355677888888999999999988877653  3333345578888888999999998888887532   2234332    


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          224 ATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       224 ~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ...+.++...+++..|...|-.+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            23355566678888888888776543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.89  E-value=8.1  Score=36.74  Aligned_cols=134  Identities=17%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH  202 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~  202 (467)
                      ++..-.+..|++=+|.+.+..              .+.-|++++++++|+++|...               |..+++.|+
T Consensus        18 ~rl~~~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q   68 (312)
T 2wpv_A           18 QRFENKIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQG---------------ALSFLKAKQ   68 (312)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred             HHHHHHhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCC
Confidence            344455566666555555443              234467788888888876543               233444555


Q ss_pred             hHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          203 PFIAAESLAKIPD------IQHMPATVATLVALKERAGDID-GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       203 ~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~~-~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      +..|..+-.-+++      ...+......++.++......+ .=..++++++.|-............++..+|..+...|
T Consensus        69 ~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~  148 (312)
T 2wpv_A           69 GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD  148 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC
Confidence            5555554222221      2224455566666665543222 33567778887754432211222345777899999999


Q ss_pred             ChhHHHHHHH
Q 012265          276 REEDASHLFE  285 (467)
Q Consensus       276 ~~~~A~~~le  285 (467)
                      ++.+|..+|-
T Consensus       149 ~~~~A~~H~i  158 (312)
T 2wpv_A          149 FVYEAERYFM  158 (312)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999988773

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.07  E-value=9.5  Score=41.90  Aligned_cols=126  Identities=10%  Similarity=0.020  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA  197 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~  197 (467)
                      +.+..+++++-+++- ++...+..++.......  .+.+..|.+++-.|+.+-...++.-+.+...++... .+.++--+
T Consensus       457 AaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR-~aalgLGl  534 (963)
T 4ady_A          457 ASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITR-GLAVGLAL  534 (963)
T ss_dssp             HHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHH-HHHHHHHh
Confidence            444566666655553 34444554443221111  233445555556666554445555444433222111 12223233


Q ss_pred             HHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265          198 AAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAI  247 (467)
Q Consensus       198 ~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al  247 (467)
                      +..|+.+.+..+++.+.....   ..+....++..|...|+......+|..+.
T Consensus       535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            345677666666666543221   22334456666777787765555666544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=82.63  E-value=29  Score=38.15  Aligned_cols=153  Identities=10%  Similarity=0.089  Sum_probs=81.8

Q ss_pred             HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH----HHhcCChhHHHHHHHHHHHhCCC------cH---HHHHHHHH
Q 012265          128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAV----LVRENKAGKAEELLGQFAEKLPD------KS---KIILLARA  194 (467)
Q Consensus       128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l----~~~~~~~~~A~~~l~~~l~~~P~------~~---~~~~l~La  194 (467)
                      .++.|..+++...+...+-....+.. ..-.+++    ++..|...+++.+|..++.....      ..   ..+.+.||
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~-~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSR-FIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCH-HHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34556777777777776542211111 1111222    24455556788888888865420      11   12337888


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      .+|+..++ +++...|..++..+.   .......|+.+|...|+.+....++.-+.+    .  .+..+... ..+|.-+
T Consensus       463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~--~~e~vrR~-aalgLGl  534 (963)
T 4ady_A          463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T--QHGNITRG-LAVGLAL  534 (963)
T ss_dssp             HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C--SCHHHHHH-HHHHHHH
T ss_pred             HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c--CcHHHHHH-HHHHHHh
Confidence            88887775 456666666653222   112334677788888887766666665442    1  11222111 1133344


Q ss_pred             HHCCChhHHHHHHHHHHH
Q 012265          272 LRHGREEDASHLFEELVK  289 (467)
Q Consensus       272 l~~g~~~~A~~~le~ll~  289 (467)
                      +..|+.+.+-.+.+.+..
T Consensus       535 l~~g~~e~~~~li~~L~~  552 (963)
T 4ady_A          535 INYGRQELADDLITKMLA  552 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHH
T ss_pred             hhCCChHHHHHHHHHHHh
Confidence            566777766666665554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.06  E-value=7  Score=39.86  Aligned_cols=61  Identities=11%  Similarity=0.018  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHhcccc--CC-CCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265          188 IILLARAQVAAAANHPFIAAESLAKIPD--IQ-HMP---ATVATLVALKERAGDIDGAAAVLDSAIK  248 (467)
Q Consensus       188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~--~~-~~p---~~~~~l~~ly~~~g~~~~A~~~l~~al~  248 (467)
                      .+...+.+.|+..+.|++|...+.+..-  .. .+.   .+.+.+|.++.-+++|.+|...|..|+.
T Consensus       232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r  298 (523)
T 4b4t_S          232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR  298 (523)
T ss_dssp             HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3457889999999999999999998852  11 122   2345679999999999999999998875

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.70  E-value=18  Score=28.13  Aligned_cols=74  Identities=14%  Similarity=0.067  Sum_probs=53.7

Q ss_pred             CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265          166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                      ...++|.. +-..++..++ .+.+.++...-++++|+|++|...++...    .|++...++..--+.|-.+++...+..
T Consensus        21 H~HqEA~t-IAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~   94 (116)
T 2p58_C           21 HYHEEANC-IAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNR   94 (116)
T ss_dssp             TCHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHH-HHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence            34467754 4567888888 55555777888899999999999988765    677766666666677877777666643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=80.47  E-value=52  Score=34.31  Aligned_cols=102  Identities=11%  Similarity=0.028  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      .++..+...+....+.-++..+...++...+.......+ +....-..+...++.|++..|...+..+......... +.
T Consensus       245 ~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r-~~  322 (618)
T 1qsa_A          245 QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE-WR  322 (618)
T ss_dssp             TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH-HH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh-HH
Confidence            456666655554445444555534455555555443333 3333333444456779999998888765443223333 45


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccc
Q 012265          191 LARAQVAAAANHPFIAAESLAKIP  214 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~  214 (467)
                      +.+|..+...|+.++|...|+.+.
T Consensus       323 YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          323 YWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh
Confidence            889999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 1/122 (0%)

Query: 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187
            L   ++ QA EL+       P           +L  +    +A+E L Q  +  P+   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 188 I-ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 246
               L     AA A   F    + AK+               L   + D +  + +    
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125

Query: 247 IK 248
            +
Sbjct: 126 EE 127

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 11/193 (5%)

Query: 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG 169
           + L P   +A Y N   +L  A   D+A         + P+  +     A V   +    
Sbjct: 196 VTLDPNFLDA-YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 170 KAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK-IPDIQHMPATVATLVA 228
            A +   +  E  P          A           A +     +        ++  L  
Sbjct: 255 LAIDTYRRAIELQPHFPDA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313

Query: 229 LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 288
           +K   G+       ++ A++ +  A+    + +      AS   + G+ ++A   ++E +
Sbjct: 314 IKREQGN-------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366

Query: 289 KTH-GSIEALVGL 300
           +      +A   +
Sbjct: 367 RISPTFADAYSNM 379

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.61
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.45
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.36
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.14
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.13
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.09
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.05
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.94
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.94
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.93
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.7
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.47
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.3
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.97
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.49
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.83
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.19
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.59
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	85.0

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-19  Score=176.87  Aligned_cols=296  Identities=12%  Similarity=0.062  Sum_probs=224.3

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|+++|++.+..+.   +     -..++..+|.++..+|++++|+..|++++..+|.+..++...+.-+...++   
T Consensus        14 ~~~~A~~~~~~~l~~~p---~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~---   82 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEP---D-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ---   82 (388)
T ss_dssp             CHHHHHHHHHHHHHHCT---T-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhCC---C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc---
Confidence            46789999999987542   2     235678899999999999999999999999999998877655444433333   


Q ss_pred             hhHHHHhhhhhhhhhhhH--------------------------------------HHHHHHhhcCCC------------
Q 012265           84 VNDSLKKLDRIKEKDMQN--------------------------------------FQLARVLDLRLS------------  113 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~--------------------------------------~~~~~~l~~kL~------------  113 (467)
                      ..+++..+.......+..                                      ............            
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            222222222211100000                                      000000000000            


Q ss_pred             --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265          114 --PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL  191 (467)
Q Consensus       114 --~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l  191 (467)
                        .+....+.++.+.++...|.++.|...+++++..+|++..++...|.++...|++++|+..+.+.+...|..... ++
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~  241 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HG  241 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH-HH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH-HH
Confidence              001134667788899999999999999999999999999999999999999999999999999999999998765 48


Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~  270 (467)
                      .+|.+|...|++++|+..|++++++.+ ++.++..++.+|...|++++|+..|+.++...    +.   ....+..+|.+
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~~  314 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PT---HADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TT---CHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC----Cc---cchhhhHHHHH
Confidence            899999999999999999999998775 67788899999999999999999999988652    11   12345668999


Q ss_pred             HHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc-cCChhHHHHHHhc
Q 012265          271 KLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA-HVDVDKAESYEKR  318 (467)
Q Consensus       271 ~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~-~~d~~kA~~l~~~  318 (467)
                      +...|++++|+..|+++++.+|+ ..++..+..++. ..+.+.|..+..+
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999986 577777877774 4567888776653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-18  Score=169.79  Aligned_cols=285  Identities=14%  Similarity=0.093  Sum_probs=211.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-   82 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-   82 (467)
                      .++.|...+++.+..+        ++...++..+|.+|..+|++++|+..|..++...+.+.................. 
T Consensus        48 ~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (388)
T d1w3ba_          48 RLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG  119 (388)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH
T ss_pred             CHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            4678888888888643        2345678999999999999999999999999998877665543222211111100 


Q ss_pred             ------------------------------ChhHHHHhhhhhhhhhhhHH-----------------HHHHHhhc--CCC
Q 012265           83 ------------------------------DVNDSLKKLDRIKEKDMQNF-----------------QLARVLDL--RLS  113 (467)
Q Consensus        83 ------------------------------~~~~a~~~l~~~~~~~~~~~-----------------~~~~~l~~--kL~  113 (467)
                                                    ....+...+.......++..                 .....++.  .+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  199 (388)
T d1w3ba_         120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD  199 (388)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC
Confidence                                          00000110000000000000                 00000000  000


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR  193 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L  193 (467)
                       +....++++.+.++...|++++|...++.....+|.....+...|.++...|++++|+..|+++++.+|++.... +.+
T Consensus       200 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~l  277 (388)
T d1w3ba_         200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY-CNL  277 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH-HHH
T ss_pred             -cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHH
Confidence             112346788899999999999999999999999999999888899999999999999999999999999998764 899


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL  272 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l  272 (467)
                      |.+|...|++++|+..|+.+....+ .+.++..++.+|...|++++|+..|+++++..       +....++..+|.++.
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence            9999999999999999999986554 66778889999999999999999999998642       222345777899999


Q ss_pred             HCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265          273 RHGREEDASHLFEELVKTHGS-IEALVGLVTTSA  305 (467)
Q Consensus       273 ~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~  305 (467)
                      ..|++++|+..|+++++.+|+ .+++.+|..++.
T Consensus       351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999986 677888877663

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-17  Score=160.98  Aligned_cols=234  Identities=10%  Similarity=0.004  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265           34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS  113 (467)
Q Consensus        34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~  113 (467)
                      .+++|..+..+|++++|+..|+++++.+|.+..++...+.-+...   ++...+...+.+.....|              
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---~~~~~A~~~~~~al~~~p--------------   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN---EQELLAISALRRCLELKP--------------   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT--------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHhhhcccc--------------
Confidence            578999999999999999999999999999988887655443333   345566666555433222              


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH---------------HHHHHHhcCChhHHHHHHHHH
Q 012265          114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL---------------QAAVLVRENKAGKAEELLGQF  178 (467)
Q Consensus       114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll---------------~a~l~~~~~~~~~A~~~l~~~  178 (467)
                        +....+++.+.++...|++++|.+.++.++..+|........               ....+...+.+.+|+..+.++
T Consensus        85 --~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_          85 --DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence              123567889999999999999999999999888875432110               111234567788999999999


Q ss_pred             HHhCCCcHH-HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265          179 AEKLPDKSK-IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE  256 (467)
Q Consensus       179 l~~~P~~~~-~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~  256 (467)
                      +..+|+... .++..+|.++...|++++|+..|++++...+ .+.++..++.+|..+|++++|+..|++++...      
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------  236 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------  236 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh------
Confidence            999987432 2347889999999999999999999987665 67788899999999999999999999999752      


Q ss_pred             CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                       +....++..+|.++...|++++|+..|+++++.+|+
T Consensus       237 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         237 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             -hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence             222345777899999999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.3e-16  Score=150.37  Aligned_cols=265  Identities=11%  Similarity=-0.041  Sum_probs=183.5

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      .+..|...++..+..+.        +...++..+|.++..+|++++|+..|.+++..+|.+...+...+.-+...+   +
T Consensus        34 ~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~  102 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDP--------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---L  102 (323)
T ss_dssp             CHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---C
T ss_pred             CHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc---c
Confidence            36788999999987542        234678999999999999999999999999999999887765444333333   3


Q ss_pred             hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH--HHHHHHH
Q 012265           84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP--LLLQAAV  161 (467)
Q Consensus        84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~--~ll~a~l  161 (467)
                      ...+...+.+.....+......... ..................+...+.+++|...+.+++..+|++..+  +...|.+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPA-EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhh-hhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            4444444443322211110000000 000000000111122233445567888999999999999987544  5567888


Q ss_pred             HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265          162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA  240 (467)
Q Consensus       162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~  240 (467)
                      +...|++++|+..+++++..+|++...+ +.+|.+|...|++++|+..|++++++++ ++.++..++.+|..+|++++|+
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLW-NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccch-hhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence            8999999999999999999999998754 8999999999999999999999998765 6778889999999999999999


Q ss_pred             HHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHCCChhHHH
Q 012265          241 AVLDSAIKWWLNAMTE----DNKLSVIMQEAASFKLRHGREEDAS  281 (467)
Q Consensus       241 ~~l~~al~~~~~~~~~----~~~~~~ll~~la~~~l~~g~~~~A~  281 (467)
                      ..|++|+...++....    ......++..++..+...|+.+.+.
T Consensus       261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999987653210    1112233444555665666665444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2e-14  Score=133.09  Aligned_cols=183  Identities=15%  Similarity=0.082  Sum_probs=141.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265          111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL  190 (467)
Q Consensus       111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~  190 (467)
                      .++..+...++++++.++...|++++|+..|++++..+|++..++...|.++...|++++|+..|+++++.+|++... +
T Consensus        30 ~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~  108 (259)
T d1xnfa_          30 ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-H  108 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-H
T ss_pred             hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhh-H
Confidence            456677888999999999999999999999999999999999999999999999999999999999999999998875 4


Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HH-------
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIK------------WW-------  250 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~------------~~-------  250 (467)
                      +.+|.+|...|++++|+..|+++++..+ ++.....++..+...+..+.+..+......            .+       
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ  188 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Confidence            8999999999999999999999987654 333344445455555443333332221110            00       


Q ss_pred             ---H---Hhc----cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265          251 ---L---NAM----TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI  294 (467)
Q Consensus       251 ---~---~~~----~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~  294 (467)
                         .   ...    ...+.....+..+|.++...|++++|+..|++++..+|+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence               0   000    0012233456668999999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-13  Score=133.12  Aligned_cols=205  Identities=11%  Similarity=0.030  Sum_probs=137.2

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR  106 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  106 (467)
                      .++...++..++.++..++++++|+.+|++++..+|.+..++.                                     
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~-------------------------------------   81 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWH-------------------------------------   81 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHH-------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHH-------------------------------------
Confidence            3456667778899999999999999999999999997765543                                     


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265          107 VLDLRLSPKQREAIYANRVLLLLHANK-MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK  185 (467)
Q Consensus       107 ~l~~kL~~~q~~~l~~n~all~l~~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~  185 (467)
                                      |++.++...|+ +++|...++.++..+|++..++...+.++...|++++|+..+.++++.+|++
T Consensus        82 ----------------~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          82 ----------------FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             ----------------HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             ----------------HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence                            33333344443 6667777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhccCCc
Q 012265          186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD------IDGAAAVLDSAIKWWLNAMTEDN  258 (467)
Q Consensus       186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~------~~~A~~~l~~al~~~~~~~~~~~  258 (467)
                      ..++ ..+|.++...|++++|+..+++++++++ +...+..++.++...+.      +++|+..+.+++...    |   
T Consensus       146 ~~a~-~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~----P---  217 (315)
T d2h6fa1         146 YHAW-QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV----P---  217 (315)
T ss_dssp             HHHH-HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS----T---
T ss_pred             hHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC----C---
Confidence            6543 6677777777777777777777776654 45556666666666554      356666666666542    1   


Q ss_pred             hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          259 KLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       259 ~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      ....+|..++.++ .....+++...++.+++..|+
T Consensus       218 ~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         218 HNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             TCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCC
Confidence            1123344445543 344456777777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.4e-14  Score=134.15  Aligned_cols=193  Identities=11%  Similarity=0.002  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265          116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKSKIILLARA  194 (467)
Q Consensus       116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P~~~~~~~l~La  194 (467)
                      ....++.+.+.++...+.+++|+..+++++..+|++..++...+.++...| ++++|+..+.++++.+|++...+ ..+|
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~-~~~~  119 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW-HHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH-HHHh
Confidence            445677788889999999999999999999999999999999999988766 58999999999999999998865 8999


Q ss_pred             HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265          195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR  273 (467)
Q Consensus       195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~  273 (467)
                      .++...|++++|+..|.+++++++ +..++..++.++...|++++|+..+++++...       +.....|...|.++..
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-------p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------CccHHHHHHHHHHHHH
Confidence            999999999999999999998876 67889999999999999999999999999852       2223456667888877


Q ss_pred             CCC------hhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCChhHHHHHH
Q 012265          274 HGR------EEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYE  316 (467)
Q Consensus       274 ~g~------~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d~~kA~~l~  316 (467)
                      .+.      +++|+..|.+++..+|+ ..++..+...+.....+.+....
T Consensus       193 ~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~  242 (315)
T d2h6fa1         193 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL  242 (315)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred             ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHH
Confidence            776      46899999999999986 56666666566655555554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.3e-11  Score=114.30  Aligned_cols=275  Identities=11%  Similarity=-0.002  Sum_probs=182.2

Q ss_pred             HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC--chHHHHHHHhhhhh-ccCC
Q 012265            5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAVAVNNLVA-LKGP   81 (467)
Q Consensus         5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~--d~~~~~va~nnl~~-l~~~   81 (467)
                      .+.|.+++++.|....-   ........++..+|.++..+|++++|+..|+.++...+.  +....+.+..++.. ....
T Consensus        28 ~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          28 PDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             HHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            56788888888864321   111223456777888888889999999888888776442  22222111112111 1112


Q ss_pred             CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc-----hHHH
Q 012265           82 KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-----MPLL  156 (467)
Q Consensus        82 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~-----~~~l  156 (467)
                      .+...+...+.......       ...... .......+..+.+.++...|+++.+...+.......+...     ....
T Consensus       105 ~~~~~a~~~~~~al~~~-------~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLI-------NEQHLE-QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             TCHHHHHHHHHHHHHHH-------HHTTCT-TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-------Hhcccc-hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            33444444333221110       000000 0012234567789999999999999999998876655432     2344


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCC---c---HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--C---hhHHHH
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPD---K---SKIILLARAQVAAAANHPFIAAESLAKIPDIQH--M---PATVAT  225 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~---~---~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--~---p~~~~~  225 (467)
                      ..+..+...+.+.++...+.++......   .   ...+...++.++...|++++|...+++++....  .   ...+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            5667778899999999988887765432   1   122346778899999999999999999986543  1   234556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265          226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH  291 (467)
Q Consensus       226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~  291 (467)
                      ++.+|...|++++|...|++++....... ..+....++..+|.++...|++++|...|++++...
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            89999999999999999999998765432 234444567778999999999999999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=133.82  Aligned_cols=261  Identities=10%  Similarity=-0.075  Sum_probs=189.8

Q ss_pred             HHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHH----------HHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265            6 LIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYV----------QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNL   75 (467)
Q Consensus         6 ~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v----------~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl   75 (467)
                      +.|..++...|..+        ++..++|...+.+          +...|++++|+..|+.++..+|.+..+....+.-+
T Consensus        46 ~~al~~~~~~l~~~--------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          46 ESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (334)
T ss_dssp             HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence            45666666666533        3333444444444          45556689999999999999999988876443333


Q ss_pred             hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH
Q 012265           76 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL  155 (467)
Q Consensus        76 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~  155 (467)
                      ..++ ..+..+++..+.+....+++               ......++.+.++...+.++.|...++.++..+|.+..++
T Consensus       118 ~~~~-~~~~~~a~~~~~~al~~~~~---------------~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~  181 (334)
T d1dcea1         118 SRLP-EPNWARELELCARFLEADER---------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (334)
T ss_dssp             HTCS-SCCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             HHhc-cccHHHHHHHHHHHHhhCch---------------hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence            3333 23455666655544332221               1123345677888889999999999999999999999999


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      ...+.++...|++++|+..+.+++..+|....     ++..+...+..++|...+.+.+...+ .+.....++.++...|
T Consensus       182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  256 (334)
T d1dcea1         182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-----LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ  256 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-----HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH-----HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence            99999999999999999998888888776533     23445667888899999998876544 3444556777888889


Q ss_pred             CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHH
Q 012265          235 DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVT  302 (467)
Q Consensus       235 ~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~  302 (467)
                      ++.+|+..+.+++..       ++....++..+|.++...|++++|+.+|+++++.+|+. ..+-.|..
T Consensus       257 ~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         257 SELESCKELQELEPE-------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             HHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhh-------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence            999999999887753       33444567778999999999999999999999999963 44444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=7.6e-12  Score=115.26  Aligned_cols=216  Identities=13%  Similarity=0.078  Sum_probs=145.0

Q ss_pred             HHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHH
Q 012265            8 FVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDS   87 (467)
Q Consensus         8 A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a   87 (467)
                      |..-..+.|...++++++    -+.+++.+|.+|..+|++++|+..|++++..+|+++.++...+..+...   ++..++
T Consensus        18 al~~~~e~l~~~~~~~~~----~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~---g~~~~A   90 (259)
T d1xnfa_          18 ILARMEQILASRALTDDE----RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA---GNFDAA   90 (259)
T ss_dssp             HHHHHHHHHTSSCCCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             HHHHHHHHHHhhhcCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH---HHHHHh
Confidence            344455677666665543    4678899999999999999999999999999999998887555544444   345556


Q ss_pred             HHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC
Q 012265           88 LKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENK  167 (467)
Q Consensus        88 ~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~  167 (467)
                      +..+.+.....|+                ...++++.+.++...|++++|...++.++..+|.+.......+..+...+.
T Consensus        91 ~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          91 YEAFDSVLELDPT----------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHHHHCTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             hhhhhHHHHHHhh----------------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            6655554333222                124678899999999999999999999999999887776666655566665


Q ss_pred             hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265          168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAV  242 (467)
Q Consensus       168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~  242 (467)
                      ...+..+........+....   ..+...++.    .+.++.+...+.......+ ...++..++.+|..+|++++|+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  231 (259)
T d1xnfa_         155 KQAKEVLKQHFEKSDKEQWG---WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL  231 (259)
T ss_dssp             HHHHHHHHHHHHHSCCCSTH---HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            55555444444443333321   222333322    2223444444433332222 234567789999999999999999


Q ss_pred             HHHHHHH
Q 012265          243 LDSAIKW  249 (467)
Q Consensus       243 l~~al~~  249 (467)
                      |++++..
T Consensus       232 ~~~al~~  238 (259)
T d1xnfa_         232 FKLAVAN  238 (259)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHc
Confidence            9999864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.4e-11  Score=114.24  Aligned_cols=282  Identities=17%  Similarity=0.049  Sum_probs=190.0

Q ss_pred             CCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH-HHhhhhh-ccCCCChhHHHHhhhhhhhh
Q 012265           20 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV-AVNNLVA-LKGPKDVNDSLKKLDRIKEK   97 (467)
Q Consensus        20 ~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v-a~nnl~~-l~~~~~~~~a~~~l~~~~~~   97 (467)
                      ++.++....|+..+   .|.++..+|++++|+.+|++++...|.+.....+ +..++-. ....++..+++..+.+....
T Consensus         4 ~~~~~~~~ae~~~l---rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_           4 DIREDTMHAEFNAL---RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             CHHHHHHHHHHHHH---HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hccccchhHHHHHH---HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45566677776544   6899999999999999999999998876543221 2122110 11123455555555543322


Q ss_pred             hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC-----CC---chHHHHHHHHHHhcCChh
Q 012265           98 DMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP-----DS---VMPLLLQAAVLVRENKAG  169 (467)
Q Consensus        98 ~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P-----~~---~~~~ll~a~l~~~~~~~~  169 (467)
                      .+.          .-.........++.+.++...|++..|...+...+...+     ..   .......+.++...|+++
T Consensus        81 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  150 (366)
T d1hz4a_          81 ARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD  150 (366)
T ss_dssp             HHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHh----------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchh
Confidence            111          012233445678899999999999999998887664321     11   123446678889999999


Q ss_pred             HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHcCChHHHHHHHhccccC----CC----ChhHHHHHHHHHHHcCCHH
Q 012265          170 KAEELLGQFAEKLPDKS----KIILLARAQVAAAANHPFIAAESLAKIPDI----QH----MPATVATLVALKERAGDID  237 (467)
Q Consensus       170 ~A~~~l~~~l~~~P~~~----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~----~p~~~~~l~~ly~~~g~~~  237 (467)
                      .|...+..++...+...    ......++.++...|++.++...+..+...    ..    ...+...++.++...|+++
T Consensus       151 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T d1hz4a_         151 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA  230 (366)
T ss_dssp             HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHH
Confidence            99999999998765421    123467788999999999999998877532    11    1234566788999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CC----HHHHHHHHHHh-ccCCh
Q 012265          238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS----IEALVGLVTTS-AHVDV  309 (467)
Q Consensus       238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd----~~ala~Lv~a~-~~~d~  309 (467)
                      +|...+++++....   ..+......+..+|.++...|++++|...|++++...   .+    ..++..+..+| ...+.
T Consensus       231 ~a~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  307 (366)
T d1hz4a_         231 AAANWLRHTAKPEF---ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK  307 (366)
T ss_dssp             HHHHHHHHSCCCCC---TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence            99999988765321   1222333445567999999999999999999998653   22    24455555555 45677


Q ss_pred             hHHHHHHh
Q 012265          310 DKAESYEK  317 (467)
Q Consensus       310 ~kA~~l~~  317 (467)
                      +.|..+..
T Consensus       308 ~~A~~~l~  315 (366)
T d1hz4a_         308 SDAQRVLL  315 (366)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=7.1e-12  Score=120.73  Aligned_cols=262  Identities=10%  Similarity=-0.040  Sum_probs=181.0

Q ss_pred             hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChh-------HHHHhhhhhhhhhhhHH
Q 012265           30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVN-------DSLKKLDRIKEKDMQNF  102 (467)
Q Consensus        30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~-------~a~~~l~~~~~~~~~~~  102 (467)
                      ..++...+.......+..++|+.+|++++..+|++..++......+..+....+..       +++..+.......|   
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p---  104 (334)
T d1dcea1          28 YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---  104 (334)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC---
Confidence            33443334444444455699999999999999999887654333333333333332       23333322221111   


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHhccccCCCCchHHH-HHHHHHHhcCChhHHHHHHHHHH
Q 012265          103 QLARVLDLRLSPKQREAIYANRVLLLLHANK--MDQARELVAALPDMFPDSVMPLL-LQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~--~~~A~~~~~~l~~~~P~~~~~~l-l~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                                   ....++++.+.++...++  +++|...++.++..+|.+..++. ..+.++...+.+++|+..+++++
T Consensus       105 -------------k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i  171 (334)
T d1dcea1         105 -------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  171 (334)
T ss_dssp             -------------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred             -------------CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHH
Confidence                         122456778888777765  78999999999999999888765 55667778899999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265          180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK  259 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~  259 (467)
                      ..+|++...+ +.++.++...|++++|+..+.+++++.+  ... .++..+...+..+++...+..++..    .+....
T Consensus       172 ~~~p~~~~a~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~~a~~~~~~~l~~----~~~~~~  243 (334)
T d1dcea1         172 TRNFSNYSSW-HYRSCLLPQLHPQPDSGPQGRLPENVLL--KEL-ELVQNAFFTDPNDQSAWFYHRWLLG----RAEPLF  243 (334)
T ss_dssp             TTTCCCHHHH-HHHHHHHHHHSCCCCSSSCCSSCHHHHH--HHH-HHHHHHHHHCSSCSHHHHHHHHHHS----CCCCSS
T ss_pred             HcCCCCHHHH-HHHHHHHHHhcCHHHHHHHHHHhHHhHH--HHH-HHHHHHHHhcchhHHHHHHHHHHHh----Ccchhh
Confidence            9999998765 8899999999999999888887765422  221 2334455667788888888887753    111111


Q ss_pred             HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccC-ChhHHHHHHhc
Q 012265          260 LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHV-DVDKAESYEKR  318 (467)
Q Consensus       260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~-d~~kA~~l~~~  318 (467)
                         .+..+|..+...|++.+|...|.+++..+|+ ..++..+..++... +.++|..+..+
T Consensus       244 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~  301 (334)
T d1dcea1         244 ---RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST  301 (334)
T ss_dssp             ---SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               1223577788889999999999999998875 56777788887554 46888777655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.5e-11  Score=96.26  Aligned_cols=109  Identities=15%  Similarity=0.028  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ..+.+..++..|++++|+..|.++++.+|.+..++...|.++...|++++|+..+.+++..+|++... ++.+|.+|...
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG-YSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhH-HHHHHHHHHHc
Confidence            35789999999999999999999999999999999999999999999999999999999999999876 48999999999


Q ss_pred             CChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPDIQH-MPATVATLVALK  230 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly  230 (467)
                      |++++|+..|+++++..+ ++.++..+..+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999998876 677766655543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.2e-10  Score=109.86  Aligned_cols=237  Identities=11%  Similarity=0.016  Sum_probs=155.8

Q ss_pred             chHHHHHHHhhhh------hcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh
Q 012265            3 LMYLIFVRIGQET------LTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV   76 (467)
Q Consensus         3 ~~l~~A~~~~~~~------l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~   76 (467)
                      .+|..|++.++..      +.   .++...-++-+.++.+.|.+|..+|++++|+..|.+++....        .     
T Consensus         6 ~~l~~aek~~~~~~~~~~~~~---~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~--------~-----   69 (290)
T d1qqea_           6 ELLKRAEKKGVPSSGFMKLFS---GSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQK--------K-----   69 (290)
T ss_dssp             HHHHHHHHHSSCCCTHHHHHS---CCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH--------H-----
T ss_pred             HHHHHHHHhcCcchhHHHHhc---CCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--------H-----
Confidence            4788888888653      22   233333455677899999999999999999999999886421        0     


Q ss_pred             hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc----
Q 012265           77 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----  152 (467)
Q Consensus        77 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~----  152 (467)
                       .   .+..+                              ....+.|.+.+|...|++++|.+.+++++..++...    
T Consensus        70 -~---~~~~~------------------------------~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          70 -A---GNEDE------------------------------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             -T---TCHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -c---CCCHH------------------------------HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence             0   01100                              113456778888889999999999988776654432    


Q ss_pred             --hHHHHHHHHHHh-cCChhHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-C----
Q 012265          153 --MPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M----  219 (467)
Q Consensus       153 --~~~ll~a~l~~~-~~~~~~A~~~l~~~l~~~P~~-----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~----  219 (467)
                        .+....+.++.. .|++++|+..|+++++..+..     ...++..+|.+|..+|+|++|+..|++++.... .    
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence              223344555544 599999999999988764321     122347789999999999999999999875422 1    


Q ss_pred             ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH--CCChhHHHHHHHHHHHhc
Q 012265          220 ---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR--HGREEDASHLFEELVKTH  291 (467)
Q Consensus       220 ---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~--~g~~~~A~~~le~ll~~~  291 (467)
                         ..++..++.++...|+++.|...|+++...++... +.... .++..++..+..  .+.+++|+..|+++.+.+
T Consensus       196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~-~sre~-~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRES-NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------H-HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-chHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence               12345667788899999999999998876543211 11111 233344444433  345778888887766554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.6e-09  Score=102.90  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHhCC----------hHHHHHHHHHHhccCCCchHHHHHHHh------hhhhccCCC-----ChhHHHHhhh
Q 012265           34 AVQLAYVQQLLGN----------TQEAFGAYTDIIKRNLADESSFAVAVN------NLVALKGPK-----DVNDSLKKLD   92 (467)
Q Consensus        34 ~~qlA~v~~~~G~----------~~eA~~~y~~~l~~~p~d~~~~~va~n------nl~~l~~~~-----~~~~a~~~l~   92 (467)
                      .+-+.|+....++          .+.+..+|++++...|.++.+.+-...      +.....+..     ....+...+.
T Consensus         9 ~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~   88 (308)
T d2onda1           9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE   88 (308)
T ss_dssp             HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHH
Confidence            3446777765442          456788999999999998887653221      111111100     1112222222


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHH
Q 012265           93 RIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKA  171 (467)
Q Consensus        93 ~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A  171 (467)
                      +.             ++. +. +....+++..+.++...|+++.|+.++++++...|.+.. +++..+....+.++++.|
T Consensus        89 ra-------------l~~-~~-p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~a  153 (308)
T d2onda1          89 RA-------------IST-LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HH-------------HTT-TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             HH-------------HHH-cC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHH
Confidence            21             110 01 112346777888888999999999999999998887755 456666777788999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH-HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          172 EELLGQFAEKLPDKSKIILLARAQVAA-AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       172 ~~~l~~~l~~~P~~~~~~~l~Laql~~-~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      ..+|.+++...|.+.... ...|.+.. ..|+.+.|..+|++++...+ ++.++...+.++...|+++.|..+|++++..
T Consensus       154 r~i~~~al~~~~~~~~~~-~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         154 RMIFKKAREDARTRHHVY-VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHH-HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCcHHHH-HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            999999999999876543 56666544 46889999999999987543 6788888899999999999999999999864


Q ss_pred             HHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       250 ~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      .+.   .......+|.....|-..+|+.+.+..+++++.+..|+
T Consensus       233 ~~~---~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         233 GSL---PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             SSS---CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             CCC---ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            211   11223345666677777889999999999999988875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-10  Score=97.28  Aligned_cols=109  Identities=11%  Similarity=-0.020  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      -+...|..++..|++++|+..+++++..+|++..++...|.++...|++++|+..|+++++.+|++..++ ..+|.+|..
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~-~~~g~~~~~   90 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY-YRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH-HHHHHHHHH
Confidence            3456799999999999999999999999999999999999999999999999999999999999998765 899999999


Q ss_pred             cCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265          200 ANHPFIAAESLAKIPDIQH-MPATVATLVAL  229 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l  229 (467)
                      .|++++|+..|++++.+.+ ++.+...+..+
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999998765 56655554444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.4e-10  Score=96.06  Aligned_cols=146  Identities=13%  Similarity=0.053  Sum_probs=110.4

Q ss_pred             CCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh
Q 012265           20 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM   99 (467)
Q Consensus        20 ~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~   99 (467)
                      ||+.+|... .+.+.-+.|..+..+|++++|+..|++++...|.+..              ..+  .....+.       
T Consensus         3 ~~~~~ek~~-~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~--~~~~~~~-------   58 (170)
T d1p5qa1           3 EMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSN--EEAQKAQ-------   58 (170)
T ss_dssp             GCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCS--HHHHHHH-------
T ss_pred             CCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cch--HHHhhhc-------
Confidence            456666443 5667778999999999999999999999987553211              000  0000000       


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          100 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       100 ~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                                     .....++.|.+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++
T Consensus        59 ---------------~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          59 ---------------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------hhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                           01224678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHcCChHH
Q 012265          180 EKLPDKSKIILLARAQVAAAANHPFI  205 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~~~~g~~~~  205 (467)
                      +.+|++.... ..++.++...++..+
T Consensus       124 ~l~P~n~~~~-~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1         124 QLYPNNKAAK-TQLAVCQQRIRRQLA  148 (170)
T ss_dssp             HHCSSCHHHH-HHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHH-HHHHHHHHHHHHHHH
Confidence            9999987653 677777665555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.13  E-value=9.4e-11  Score=94.53  Aligned_cols=93  Identities=16%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .++.++.++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++...+ +.||.+|..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~-~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH-AALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccch-HHHHHHHHHC
Confidence            467899999999999999999999999999999999999999999999999999999999999998764 8899999999


Q ss_pred             CChHHHHHHHhccc
Q 012265          201 NHPFIAAESLAKIP  214 (467)
Q Consensus       201 g~~~~A~~~L~~~~  214 (467)
                      |++++|+..|++++
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.7e-09  Score=95.75  Aligned_cols=127  Identities=9%  Similarity=-0.021  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA  199 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~  199 (467)
                      -.+|.+..++..|+++.|++.+..+.   |.+..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|..
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a-~~~~g~~~~~   82 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA-YFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh-HHHHHHHHHh
Confidence            45689999999999999999999863   4456778889999999999999999999999999999875 5899999999


Q ss_pred             cCChHHHHHHHhccccCC--------------C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265          200 ANHPFIAAESLAKIPDIQ--------------H---MPATVATLVALKERAGDIDGAAAVLDSAIKWW  250 (467)
Q Consensus       200 ~g~~~~A~~~L~~~~~~~--------------~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~  250 (467)
                      +|++++|+..|++++...              +   ...++..++.+|..+|++++|+..|..++..+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999999999986321              0   12456788999999999999999999988753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=4.6e-10  Score=105.85  Aligned_cols=194  Identities=9%  Similarity=0.026  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCC---C---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HH
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPD---S---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SK  187 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~---~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~  187 (467)
                      .++.+.+.++-..+++++|.+.+.++...+..   .   ...+.-.|.+|...|++++|+..++++++..+..     ..
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            35666788889999999999999988765321   1   1234456778889999999999999988865432     11


Q ss_pred             HHHHHHHHHHHH-cCChHHHHHHHhccccCC---CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265          188 IILLARAQVAAA-ANHPFIAAESLAKIPDIQ---HM----PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK  259 (467)
Q Consensus       188 ~~~l~Laql~~~-~g~~~~A~~~L~~~~~~~---~~----p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~  259 (467)
                      .+...++.+|.. .|++++|+..|++++++.   ..    ..++..++.+|..+|++++|+..|++++............
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            234677888866 599999999999997531   12    2345678999999999999999999998764332211223


Q ss_pred             HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC------HHHHHHHHHHhccCChhHH
Q 012265          260 LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKA  312 (467)
Q Consensus       260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd------~~ala~Lv~a~~~~d~~kA  312 (467)
                      ....+...|.+++..|++..|...|+++++.+|.      ...+..|+.++...|.++-
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~  256 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence            3345566788889999999999999999988764      2345667778877775443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.5e-10  Score=90.56  Aligned_cols=93  Identities=13%  Similarity=0.031  Sum_probs=85.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      .-.|..++..|++++|+..|.+++..+|++... ++.+|.+|...|++++|+..+++++.+++ ++..+..++.+|..+|
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhh-hhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            456888999999999999999999999999875 48999999999999999999999998775 7788899999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 012265          235 DIDGAAAVLDSAIKW  249 (467)
Q Consensus       235 ~~~~A~~~l~~al~~  249 (467)
                      ++++|+..|++++..
T Consensus        86 ~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          86 RFEEAKRTYEEGLKH  100 (117)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999975

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.6e-09  Score=92.58  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      .-.|..+++.|++++|+..|++++..+|++... ++.+|.+|+..|++++|+..|++++++++ ++.++..++.+|..+|
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhh-hhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            456778899999999999999999999999876 48999999999999999999999998776 6778889999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 012265          235 DIDGAAAVLDSAIKW  249 (467)
Q Consensus       235 ~~~~A~~~l~~al~~  249 (467)
                      ++++|+..|++++..
T Consensus        93 ~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          93 KFRAALRDYETVVKV  107 (159)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999999976

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-09  Score=96.61  Aligned_cols=133  Identities=8%  Similarity=-0.032  Sum_probs=108.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265          157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD  235 (467)
Q Consensus       157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~  235 (467)
                      ..|..+...|++++|++.|.++   .|.+... ++.+|.+|...|++++|+..|++++++++ .+..+..++.+|.++|+
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~-~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QDPHSRI-CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CCCCHHH-HHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            4677888999999999998764   4455554 58999999999999999999999998876 77788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC---------CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          236 IDGAAAVLDSAIKWWLNAMTE---------DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       236 ~~~A~~~l~~al~~~~~~~~~---------~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +++|+..|++++...+.+...         ......++..+|.++...|++++|...|+.++...|+
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999753221100         0111245667899999999999999999999998875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.6e-09  Score=92.34  Aligned_cols=96  Identities=17%  Similarity=0.021  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265          156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG  234 (467)
Q Consensus       156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g  234 (467)
                      .-.|..++..|++++|+..|.+++..+|+++.. +..+|.+|...|++++|+..|++++++++ ++..+..++.+|..+|
T Consensus         8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~-~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            345666777777777777777777777777654 36777777777777777777777777655 4556667777777777


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 012265          235 DIDGAAAVLDSAIKWWLN  252 (467)
Q Consensus       235 ~~~~A~~~l~~al~~~~~  252 (467)
                      ++++|+..|++++...+.
T Consensus        87 ~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          87 SYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcc
Confidence            777777777777766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=2.9e-10  Score=100.34  Aligned_cols=96  Identities=11%  Similarity=-0.057  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      ..+.+..++..|++++|+..|++++..+|.+..++...|.+|...|++++|+..|++++..+|++... ++.+|.+|...
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a-~~~lg~~~~~l   85 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA-HFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHH-HHHHHHHHHHC
Confidence            34779999999999999999999999999999999999999999999999999999999999999876 48999999999


Q ss_pred             CChHHHHHHHhccccCC
Q 012265          201 NHPFIAAESLAKIPDIQ  217 (467)
Q Consensus       201 g~~~~A~~~L~~~~~~~  217 (467)
                      |++++|+..|++++++.
T Consensus        86 ~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          86 ESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999998654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=1.3e-08  Score=86.43  Aligned_cols=139  Identities=12%  Similarity=-0.012  Sum_probs=106.0

Q ss_pred             CCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh
Q 012265           20 NFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM   99 (467)
Q Consensus        20 ~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~   99 (467)
                      +++++|...+. ..+-..|..+...|++.+|+..|++++...+...               .............      
T Consensus         7 ~~~~~e~~~~a-~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~---------------~~~~~~~~~~~~~------   64 (153)
T d2fbna1           7 DYTDEEKVQSA-FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE---------------EWDDQILLDKKKN------   64 (153)
T ss_dssp             GCCHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT---------------TCCCHHHHHHHHH------
T ss_pred             hCCHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh---------------hhhhHHHHHhhhh------
Confidence            57787765444 5567799999999999999999999987543210               0000011111000      


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          100 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       100 ~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                                      -...++.|++.+++..|++++|++.++.++..+|.+..+++..|.++...|++++|+..|++++
T Consensus        65 ----------------~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          65 ----------------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence                            0124678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHH
Q 012265          180 EKLPDKSKIILLARAQVA  197 (467)
Q Consensus       180 ~~~P~~~~~~~l~Laql~  197 (467)
                      ..+|++.... ..+..+.
T Consensus       129 ~l~P~n~~~~-~~l~~~~  145 (153)
T d2fbna1         129 SLNPNNLDIR-NSYELCV  145 (153)
T ss_dssp             HHSTTCHHHH-HHHHHHH
T ss_pred             HhCCCCHHHH-HHHHHHH
Confidence            9999997653 5555544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.8e-09  Score=86.93  Aligned_cols=109  Identities=12%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265          192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF  270 (467)
Q Consensus       192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~  270 (467)
                      .+|..|...|+|++|+.+|.+++++++ ++.++..++.+|.++|++++|+..+++++...+........+..++..+|..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            456666677777777777777766554 4556666777777777777777777777766544332222333456668999


Q ss_pred             HHHCCChhHHHHHHHHHHHhcCCHHHHHHH
Q 012265          271 KLRHGREEDASHLFEELVKTHGSIEALVGL  300 (467)
Q Consensus       271 ~l~~g~~~~A~~~le~ll~~~pd~~ala~L  300 (467)
                      +...+++++|+.+|++++..+++.+.+..+
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~~~~~~~~l  118 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            999999999999999999988776554433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.97  E-value=6.8e-09  Score=89.53  Aligned_cols=143  Identities=15%  Similarity=0.028  Sum_probs=106.6

Q ss_pred             CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265           21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ  100 (467)
Q Consensus        21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~  100 (467)
                      |+.+|.- +.+.+.-+.|..++..|++++|+..|++++...+...                .........+.        
T Consensus         6 m~~~E~~-~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~----------------~~~~~~~~~~~--------   60 (168)
T d1kt1a1           6 MDTKEKL-EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY----------------GLSEKESKASE--------   60 (168)
T ss_dssp             SCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC----------------SCCHHHHHHHH--------
T ss_pred             CCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh----------------ccchhhhhhcc--------
Confidence            5555533 4566778899999999999999999999886432110                00000000000        


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265          101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE  180 (467)
Q Consensus       101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~  180 (467)
                                    .....++.|++.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++.
T Consensus        61 --------------~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          61 --------------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                          112357889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHcCCh
Q 012265          181 KLPDKSKIILLARAQVAAAANHP  203 (467)
Q Consensus       181 ~~P~~~~~~~l~Laql~~~~g~~  203 (467)
                      .+|++... ...++.+....+.+
T Consensus       127 l~P~n~~~-~~~l~~~~~~~~~~  148 (168)
T d1kt1a1         127 VNPQNKAA-RLQIFMCQKKAKEH  148 (168)
T ss_dssp             SCTTCHHH-HHHHHHHHHHHHHH
T ss_pred             hCCCCHHH-HHHHHHHHHHHHhH
Confidence            99998764 36666665544433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.96  E-value=1.5e-09  Score=87.17  Aligned_cols=92  Identities=13%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265          155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA  233 (467)
Q Consensus       155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~  233 (467)
                      .+-.|..+.+.|++.+|+..+++++..+|++.... +.+|.+|...|++++|+..|++++++++ ++.++..++.+|..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhh-hhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45667888999999999999999999999998764 8999999999999999999999998876 678889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 012265          234 GDIDGAAAVLDSAI  247 (467)
Q Consensus       234 g~~~~A~~~l~~al  247 (467)
                      |++++|+..|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999864

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=3.4e-08  Score=93.44  Aligned_cols=179  Identities=12%  Similarity=0.064  Sum_probs=138.2

Q ss_pred             CHHHHHHHHHhcccc-CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHh
Q 012265          133 KMDQARELVAALPDM-FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA  211 (467)
Q Consensus       133 ~~~~A~~~~~~l~~~-~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~  211 (467)
                      ..++|+.++++++.. .|.+...++..+.++...|+++.|..+|.+++...|.+...+...++.+..+.|+++.|..+|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            357889999998875 5777777778888889999999999999999999998755455788999999999999999999


Q ss_pred             ccccCCC-ChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265          212 KIPDIQH-MPATVATLVALK-ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK  289 (467)
Q Consensus       212 ~~~~~~~-~p~~~~~l~~ly-~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~  289 (467)
                      +++...+ .+.++...+.+. ...|+.+.|..+|+.++..++.    +   ..++...+.++...|+++.|..+|++++.
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~----~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD----I---PEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT----C---HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh----h---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            9987654 555665556554 3468999999999999986422    2   34677789999999999999999999999


Q ss_pred             hcCC-H----HHHHHHHH-HhccCChhHHHHHHhc
Q 012265          290 THGS-I----EALVGLVT-TSAHVDVDKAESYEKR  318 (467)
Q Consensus       290 ~~pd-~----~ala~Lv~-a~~~~d~~kA~~l~~~  318 (467)
                      ..|. .    ..+..++. -..++|.+.+..+.++
T Consensus       232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7642 1    22222222 2356777777666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=8.7e-09  Score=88.82  Aligned_cols=144  Identities=14%  Similarity=0.016  Sum_probs=108.7

Q ss_pred             hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265           25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL  104 (467)
Q Consensus        25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  104 (467)
                      +...+++...-..|..+...|++++|+..|++++...+.+..           ...   .... ..+             
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~-----------~~~---~~~~-~~~-------------   72 (169)
T d1ihga1          21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA-----------AAE---DADG-AKL-------------   72 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-----------HSC---HHHH-GGG-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh-----------hhh---hHHH-HHh-------------
Confidence            334456666678899999999999999999998864321100           000   0000 000             


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                               .+....++.|++.+++..|++++|+..++++++.+|++..+++..|.++...|++++|+..|+++++..|+
T Consensus        73 ---------~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1          73 ---------QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ---------ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                     01234578899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHcCChHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIA  206 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A  206 (467)
                      +..+ ...|..++.....+.++
T Consensus       144 n~~~-~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         144 DKAI-QAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CHHH-HHHHHHHHHHHHHHHHH
Confidence            9765 46777776655544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.1e-10  Score=118.94  Aligned_cols=213  Identities=12%  Similarity=0.050  Sum_probs=93.6

Q ss_pred             hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265            4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD   83 (467)
Q Consensus         4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~   83 (467)
                      |..+|.+..++.+.        ++++++..+..+|.++..+|++++|   |++++..+|......-+.. .+.. ..+.+
T Consensus         1 ~~~eA~q~~~qA~~--------l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~-~Lw~-~~y~~   67 (497)
T d1ya0a1           1 MSLQSAQYLRQAEV--------LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ-DLWN-HAFKN   67 (497)
T ss_dssp             CHHHHHHHHHHHHH--------HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH-HHHH-HHTHH
T ss_pred             CcHHHHHHHHHHHH--------cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH-HHHH-HHHHH
Confidence            67788888888886        5566777788899999999999876   9999998885433321100 0000 00111


Q ss_pred             hhHHHHhhhhh----------------hh-hhhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 012265           84 VNDSLKKLDRI----------------KE-KDMQNFQLARVLDLRLS-PKQREAIYANRVLLLLHANKMDQARELVAALP  145 (467)
Q Consensus        84 ~~~a~~~l~~~----------------~~-~~~~~~~~~~~l~~kL~-~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~  145 (467)
                      ..+.++.....                .. ....+..+...+...+. .+.....+.|.+.++...|+.+.|...+...+
T Consensus        68 ~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  147 (497)
T d1ya0a1          68 QITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC  147 (497)
T ss_dssp             HHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHH
T ss_pred             HHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence            11111111100                00 00000111111111110 01122234445555555555555555444443


Q ss_pred             ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH
Q 012265          146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA  224 (467)
Q Consensus       146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~  224 (467)
                      ..+|.  .+++..|.++...+++++|+..|.+++..+|++... +..||.+|...|++.+|+..|.+++.+++ .+....
T Consensus       148 ~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~-~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~  224 (497)
T d1ya0a1         148 SYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP-YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST  224 (497)
T ss_dssp             HHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH-HHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred             CCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence            33321  233444555555555666666666666666555443 35555555556666666666655555432 444455


Q ss_pred             HHHHHHHH
Q 012265          225 TLVALKER  232 (467)
Q Consensus       225 ~l~~ly~~  232 (467)
                      .|..++..
T Consensus       225 nL~~~~~~  232 (497)
T d1ya0a1         225 NLQKALSK  232 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.8e-09  Score=89.78  Aligned_cols=118  Identities=16%  Similarity=0.056  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---------------HHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---------------PLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---------------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                      ....+.|..++..|++++|+..|++++..+|....               ++...|.++.+.|++++|+..+.+++..+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            34567899999999999999999999887775431               123356778889999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH
Q 012265          184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID  237 (467)
Q Consensus       184 ~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~  237 (467)
                      +++..+ +.+|.+|...|++++|+..|++++++++ ++.+...+..++...+...
T Consensus        94 ~~~~a~-~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          94 NNEKGL-SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             TCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhh-HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            988764 8889999999999999999999988775 7777777777666554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.4e-09  Score=86.48  Aligned_cols=103  Identities=14%  Similarity=-0.018  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH------HHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI------ILLAR  193 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~------~~l~L  193 (467)
                      .+.+.+..++..|++++|+..|++++..+|++..++...|.++...|++++|+..+.++++.+|++...      +++.+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            455677777777777777777777777777777777777777777777777777777777766554321      23445


Q ss_pred             HHHHHHcCChHHHHHHHhccccCCCChhH
Q 012265          194 AQVAAAANHPFIAAESLAKIPDIQHMPAT  222 (467)
Q Consensus       194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~  222 (467)
                      |.++...+++++|+..|++.+....++.+
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence            55666666666666666666544444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-08  Score=82.80  Aligned_cols=86  Identities=10%  Similarity=-0.094  Sum_probs=40.5

Q ss_pred             HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC---hHHHHHHHhccccCCCCh---hHHHHHHHHHHHcCCH
Q 012265          163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH---PFIAAESLAKIPDIQHMP---ATVATLVALKERAGDI  236 (467)
Q Consensus       163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~---~~~A~~~L~~~~~~~~~p---~~~~~l~~ly~~~g~~  236 (467)
                      +..+++++|++.|++++..+|++... ++.+|.+++..++   +++|+.+|++++..++.|   .++..||.+|.++|++
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~-~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKST-QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHH-HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence            34445555555555555555555443 2455555543322   233555555554433322   2344455555555555


Q ss_pred             HHHHHHHHHHHHH
Q 012265          237 DGAAAVLDSAIKW  249 (467)
Q Consensus       237 ~~A~~~l~~al~~  249 (467)
                      ++|+.+|++++..
T Consensus        89 ~~A~~~~~~aL~~  101 (122)
T d1nzna_          89 EKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.70  E-value=4.1e-08  Score=84.41  Aligned_cols=110  Identities=18%  Similarity=0.070  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccc----------------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDM----------------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~----------------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                      ..+.+..++..|++++|+..+.+++..                .|....++...|.++.+.|++++|+..+.++++.+|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            346677888899999998888776532                2333333444566666677777777777777777777


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE  231 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~  231 (467)
                      +..++ +.+|.+|...|++++|+..|++++++++ ++.+...+..++.
T Consensus       110 ~~~a~-~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         110 NTKAL-YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             CHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhHH-HhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            66543 6677777777777777777777766554 4445444444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.4e-09  Score=105.17  Aligned_cols=161  Identities=7%  Similarity=-0.070  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhccccC--CCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265          134 MDQARELVAALPDMF--PDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL  210 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~--P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L  210 (467)
                      +..+++.+....+..  ++.... ..+...+....+.|..|+..|++.+...|++... ...++.++...|++++|+..+
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~-~~~lg~~~~~~~~~~~A~~~~  143 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK-SSQLGIISNKQTHTSAIVKPQ  143 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHH-HHHhHHHHHhCCCHHHHHHHH
Confidence            344555555444322  332222 2234445556777888888888888777877654 377888888888888888888


Q ss_pred             hccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265          211 AKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT  290 (467)
Q Consensus       211 ~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~  290 (467)
                      .+.+.... ...+..+|.++...|++++|+..|.+|+..+++    +   ...+..+|.++...|++.+|+..|.+++..
T Consensus       144 ~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~----~---~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         144 SSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS----N---GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----B---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            77764332 134557888888888999888888888876422    1   234666888888888998898888888887


Q ss_pred             cCC-HHHHHHHHHH
Q 012265          291 HGS-IEALVGLVTT  303 (467)
Q Consensus       291 ~pd-~~ala~Lv~a  303 (467)
                      .|+ ..+..+|...
T Consensus       216 ~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         216 KFPFPAASTNLQKA  229 (497)
T ss_dssp             SBCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            743 4555444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.68  E-value=9.5e-08  Score=80.78  Aligned_cols=109  Identities=12%  Similarity=-0.027  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch----------------HHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM----------------PLLLQAAVLVRENKAGKAEELLGQFAEKLPD  184 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~----------------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~  184 (467)
                      ....|..++..|++.+|+..+..++...|....                .+.-.|.+|.+.|++++|+..+.++++.+|+
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            456788889999999999999988766553321                1223566777888888888888888888888


Q ss_pred             cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265          185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALK  230 (467)
Q Consensus       185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly  230 (467)
                      +...+ +.+|.+|...|++++|+..|++++++++ ++.+...+..+.
T Consensus       100 ~~ka~-~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1         100 NVKAL-YKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             CHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hhhhh-HHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            87654 7888888888888888888888887765 555554444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.68  E-value=2.4e-07  Score=79.49  Aligned_cols=117  Identities=15%  Similarity=0.056  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---------------HHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265          119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---------------PLLLQAAVLVRENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---------------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P  183 (467)
                      ......|..++..|++++|+..+.+++...|....               ++.-.|.++...|++.+|+..+.+++..+|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            34567899999999999999999987754433221               122357778899999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265          184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI  236 (467)
Q Consensus       184 ~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~  236 (467)
                      ++.... +.+|.+|...|++++|+..|++++.+++ ++.+...+..+....+..
T Consensus        96 ~~~~a~-~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          96 ANEKGL-YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            998764 8999999999999999999999998876 666666666665544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.3e-08  Score=78.75  Aligned_cols=111  Identities=11%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265           37 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ  116 (467)
Q Consensus        37 lA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q  116 (467)
                      ++..+..++++++|++.|++++..+|.++.+++-.+..++..+...+...+...+.++....              ..+.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--------------~~~~   70 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--------------SKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--------------CHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--------------CCch
Confidence            34556788999999999999999999988877643333322222222233444333322111              0112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH
Q 012265          117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV  161 (467)
Q Consensus       117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l  161 (467)
                      ...+++|.|.+|...|++++|++.+++++..+|++..+..+...+
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            223556666666666666666666666666666666555444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.58  E-value=1.6e-07  Score=79.47  Aligned_cols=111  Identities=13%  Similarity=-0.058  Sum_probs=71.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhCCCcH-----------HHHHHHHHHHHHHcCChHHHHHHHhccccCC-------C--
Q 012265          159 AAVLVRENKAGKAEELLGQFAEKLPDKS-----------KIILLARAQVAAAANHPFIAAESLAKIPDIQ-------H--  218 (467)
Q Consensus       159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~-----------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-------~--  218 (467)
                      |..++..|+|++|+..|+++++.+|+..           ..++..+|.+|...|++++|+..+++++.+.       .  
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            3344455555555555555555444321           1234667888888888888888888876421       1  


Q ss_pred             C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265          219 M---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS  269 (467)
Q Consensus       219 ~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~  269 (467)
                      .   ..++..++.+|..+|++++|+..|+++++.++...........++..++.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~  149 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  149 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHH
Confidence            1   12456789999999999999999999999887655443444444444333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.58  E-value=7.9e-08  Score=89.05  Aligned_cols=123  Identities=15%  Similarity=0.023  Sum_probs=102.3

Q ss_pred             HHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH
Q 012265          126 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI  205 (467)
Q Consensus       126 ll~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~  205 (467)
                      .-++..|++++|+..+++.++.+|++..+....+.+|+..|++++|+..|+.+++.+|++.... ..+++++...+...+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~-~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA-SQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHhccccHH
Confidence            3457789999999999999999999999999999999999999999999999999999998754 788999888888887


Q ss_pred             HHHHHhccccCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265          206 AAESLAKIPDIQHMP--ATVATLVALKERAGDIDGAAAVLDSAIKW  249 (467)
Q Consensus       206 A~~~L~~~~~~~~~p--~~~~~l~~ly~~~g~~~~A~~~l~~al~~  249 (467)
                      +...+....-....+  ......+.++...|++++|+.+++++...
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            766655543332222  23445677888999999999999998875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.51  E-value=5.8e-08  Score=89.97  Aligned_cols=127  Identities=15%  Similarity=0.064  Sum_probs=94.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHH
Q 012265          160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDG  238 (467)
Q Consensus       160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~  238 (467)
                      .-++.+|++++|+..|++.++.+|++... +..|+++|+..|++++|+..|+.++++.+ ....+..++.++...+..++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~a-r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASL-RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            44568999999999999999999999875 59999999999999999999999998765 44556666777666555544


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265          239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS  293 (467)
Q Consensus       239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd  293 (467)
                      +...+....     ...+++... .+...+..+...|++++|..+++++.+..|+
T Consensus        83 a~~~~~~~~-----~~~~p~~~~-~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          83 FAQGAATAK-----VLGENEELT-KSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HTTSCCCEE-----CCCSCHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhhhh-----cccCchHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            332222111     011122332 3333588889999999999999999999875

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=6.7e-08  Score=81.09  Aligned_cols=87  Identities=14%  Similarity=0.011  Sum_probs=73.5

Q ss_pred             cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----------cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----------ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----------~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      .+.|++|+..++.++..+|++..++...|.++..          .+.+++|+..|+++++.+|++...+ +.+|.+|..+
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~-~~lG~~y~~~   88 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHH-hhHHHHHHHc
Confidence            3458999999999999999999999888888764          3455789999999999999998764 8899999877


Q ss_pred             CC-----------hHHHHHHHhccccCCC
Q 012265          201 NH-----------PFIAAESLAKIPDIQH  218 (467)
Q Consensus       201 g~-----------~~~A~~~L~~~~~~~~  218 (467)
                      |+           |++|+..|++++++++
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            64           6788888888887765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.47  E-value=2.8e-05  Score=70.57  Aligned_cols=224  Identities=11%  Similarity=-0.038  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265           33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR  111 (467)
Q Consensus        33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k  111 (467)
                      .++.||..+..+|++++|+..|+++.+.  .|....+.++.-+.. .....+...+...+......              
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--------------   67 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--------------   67 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--------------
Confidence            4688999999999999999999999875  455555433322222 11134555555555432211              


Q ss_pred             CCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCC
Q 012265          112 LSPKQREAIYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLP  183 (467)
Q Consensus       112 L~~~q~~~l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P  183 (467)
                          .......+.+.++..    ....+.|...++......+  ..+....+..+..    ......|...+......  
T Consensus        68 ----~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--  139 (265)
T d1ouva_          68 ----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--  139 (265)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred             ----cccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc--
Confidence                011234555665554    3567888888888776543  3333333434432    44455677777766553  


Q ss_pred             CcHHHHHHHHHHHHHH----cCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcc
Q 012265          184 DKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMT  255 (467)
Q Consensus       184 ~~~~~~~l~Laql~~~----~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~  255 (467)
                      .+... ...|+.+|..    ..+...+...++.+.+.. ++.....|+.+|..    ..+++.|+.+|.++...      
T Consensus       140 ~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g-~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------  211 (265)
T d1ouva_         140 NDGDG-CTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------  211 (265)
T ss_dssp             TCHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------
T ss_pred             cccch-hhhhhhhhccCCCcccccccchhhhhcccccc-ccccccchhhhcccCcccccchhhhhhhHhhhhcc------
Confidence            33433 4788999986    566778888888776543 45666678888887    67899999999998763      


Q ss_pred             CCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhc
Q 012265          256 EDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTH  291 (467)
Q Consensus       256 ~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~  291 (467)
                      ++   ...+..+|.++..    ..++++|..+|+++....
T Consensus       212 g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         212 EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            11   2245568998876    348899999999998765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.43  E-value=7.7e-07  Score=75.11  Aligned_cols=102  Identities=21%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHhccccCCC-C------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC
Q 012265          191 LARAQVAAAANHPFIAAESLAKIPDIQH-M------------PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED  257 (467)
Q Consensus       191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~------------p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~  257 (467)
                      +..|..++..|+|++|+..|++++++.+ .            ...+..++.+|..+|++++|+..+++++..++......
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            4458899999999999999999986432 1            12466789999999999999999999999876543211


Q ss_pred             ----chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265          258 ----NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG  292 (467)
Q Consensus       258 ----~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p  292 (467)
                          +....++..+|.+|...|++++|+..|+++++..|
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                12334567789999999999999999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.8e-06  Score=66.46  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHH
Q 012265          220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALV  298 (467)
Q Consensus       220 p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala  298 (467)
                      ++-...+|.++.++|++++|+..|++|+...+...........++..+|.++.+.|++++|+..|+++++.+|+ ..++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            34456789999999999999999999998876544333445567888999999999999999999999999987 56666


Q ss_pred             HHH
Q 012265          299 GLV  301 (467)
Q Consensus       299 ~Lv  301 (467)
                      ++.
T Consensus        85 Nl~   87 (95)
T d1tjca_          85 NLK   87 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.37  E-value=4.7e-07  Score=75.70  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=82.7

Q ss_pred             HHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHH
Q 012265           41 QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI  120 (467)
Q Consensus        41 ~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l  120 (467)
                      +.++|.+++|+..|+.++..+|+++.++...+..+..+.+.....+                                  
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------------------   52 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD----------------------------------   52 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------------------
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH----------------------------------
Confidence            5678889999999999999999999888754433321111000000                                  


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHhCCCcHHHH
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-----------KAGKAEELLGQFAEKLPDKSKII  189 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-----------~~~~A~~~l~~~l~~~P~~~~~~  189 (467)
                               ..+.+++|+..++++++.+|++..++...|.+|...|           .+.+|++.|+++++.+|++... 
T Consensus        53 ---------~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~-  122 (145)
T d1zu2a1          53 ---------AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY-  122 (145)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-
T ss_pred             ---------HHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHH-
Confidence                     1123577889999999999999999888888886554           4688999999999999999764 


Q ss_pred             HHHHHHHH
Q 012265          190 LLARAQVA  197 (467)
Q Consensus       190 ~l~Laql~  197 (467)
                      +..|+...
T Consensus       123 ~~~L~~~~  130 (145)
T d1zu2a1         123 LKSLEMTA  130 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            35666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=6.7e-06  Score=71.04  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH----------------------HHHHHHHHHhcCChhHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMP----------------------LLLQAAVLVRENKAGKAEELLGQ  177 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~----------------------~ll~a~l~~~~~~~~~A~~~l~~  177 (467)
                      .+++.+..+...|++++|...|..++..+++....                      +...+.++...|++++|+..+++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            46678899999999999999999999998876432                      12233344445555555555555


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcc
Q 012265          178 FAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKI  213 (467)
Q Consensus       178 ~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~  213 (467)
                      ++..+|.+... +..++.+|...|++.+|+..|+++
T Consensus        93 al~~~P~~e~~-~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          93 LTFEHPYREPL-WTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHSTTCHHH-HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCccHHH-HHHHHHHHHHhcCHHHHHHHHHHH
Confidence            55555554433 244455555555555555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=3.6e-05  Score=66.24  Aligned_cols=122  Identities=6%  Similarity=-0.054  Sum_probs=92.4

Q ss_pred             HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265           27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR  106 (467)
Q Consensus        27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  106 (467)
                      +-.---.++..|..+...|++++|...|.+++...+.+...      ++   . ....  +.....++.           
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------~~---~-~~~w--~~~~r~~l~-----------   63 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------DL---R-DFQF--VEPFATALV-----------   63 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------GG---T-TSTT--HHHHHHHHH-----------
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------cC---c-chHH--HHHHHHHHH-----------
Confidence            33333556778999999999999999999999988765321      10   0 0111  111111110           


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265          107 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA  179 (467)
Q Consensus       107 ~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l  179 (467)
                              .+...+..+.+.+++..|++++|+..++.++..+|.+..++...+.++...|++.+|+..|+++.
T Consensus        64 --------~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          64 --------EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                    12345678899999999999999999999999999999999999999999999999999999874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.2e-05  Score=61.63  Aligned_cols=76  Identities=9%  Similarity=-0.056  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCC-------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDS-------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA  192 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~-------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~  192 (467)
                      -.|+.+.+++..|++++|+..+++++...|.+       ..++...|.++.+.|++++|+..++++++.+|++..+. ..
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~-~N   85 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN-GN   85 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH-HH
Confidence            36789999999999999999999888765543       23455678888899999999999999999999987643 55


Q ss_pred             HHHH
Q 012265          193 RAQV  196 (467)
Q Consensus       193 Laql  196 (467)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.95  E-value=0.0011  Score=59.48  Aligned_cols=91  Identities=11%  Similarity=-0.022  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265          120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQ  195 (467)
Q Consensus       120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq  195 (467)
                      .+++++..+...+++++|++.++++.+  .++..+.+.++.++..    ..++..|...++......  +... ...++.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a-~~~l~~   78 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG-CHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-HHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccch-hhcccc
Confidence            567888888889999999999998864  4577787788888765    667788888888776643  3333 366666


Q ss_pred             HHHH----cCChHHHHHHHhcccc
Q 012265          196 VAAA----ANHPFIAAESLAKIPD  215 (467)
Q Consensus       196 l~~~----~g~~~~A~~~L~~~~~  215 (467)
                      ++..    ..+.+.|...|+.+.+
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~  102 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACD  102 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhh
Confidence            6654    4677788888777654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.0012  Score=52.40  Aligned_cols=70  Identities=7%  Similarity=-0.006  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHhccccCCCCc-hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265          119 AIYANRVLLLLHANK---MDQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI  188 (467)
Q Consensus       119 ~l~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~-~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~  188 (467)
                      ...||.|..++++..   .+.++.+++.+.+.+|.+. +.++.+|..+.+.|+|++|...++.+++..|++..+
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            467888999988766   5688888998888888764 577788888999999999999999999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.0077  Score=48.04  Aligned_cols=111  Identities=15%  Similarity=-0.002  Sum_probs=74.8

Q ss_pred             CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 012265          166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAA  241 (467)
Q Consensus       166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~  241 (467)
                      .++++|+..|+++.+..  +... .+.|+..  ...++++|+..|++..+.. ++.....|+.+|..    ..+++.|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a-~~~l~~~--~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFG-CLSLVSN--SQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH-HHHHHTC--TTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhh-hhhhccc--cccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHH
Confidence            46778888888887764  2222 2555543  4577888888888877644 45556677888775    456788888


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhc
Q 012265          242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTH  291 (467)
Q Consensus       242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~  291 (467)
                      +|+++...      ++   ......+|.+|..    ..++++|..+|+++.+..
T Consensus        81 ~~~~aa~~------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGL------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhcc------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            88887752      11   1234457888776    357888999999888654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.011  Score=46.57  Aligned_cols=72  Identities=7%  Similarity=-0.018  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265          152 VMPLLLQAAVLVREN---KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV  223 (467)
Q Consensus       152 ~~~~ll~a~l~~~~~---~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~  223 (467)
                      ....+-.|-.+++..   +..+|+.+|+.++..+|.+....++.||-.|.+.|+|++|...+++++++++ +....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            345566666666554   4468999999999999877544558999999999999999999999998876 44333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.014  Score=46.35  Aligned_cols=107  Identities=10%  Similarity=0.003  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHHH
Q 012265          134 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAES  209 (467)
Q Consensus       134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~~  209 (467)
                      +++|.+.+++..+.  ++..+.+..+.  ....+.++|+..|+++.+.  +++.. .+.|+.+|..    ..++.+|+.+
T Consensus         9 ~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a-~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           9 LKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNG-CRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHH-HHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhh-hhhHHHhhhhccccchhhHHHHHH
Confidence            45566666655443  23344433332  3456788999999998875  45554 4889999986    5678999999


Q ss_pred             HhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012265          210 LAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIK  248 (467)
Q Consensus       210 L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~  248 (467)
                      |+++.+.. ++.....|+.+|..    ..+.++|+.+|++|..
T Consensus        82 ~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          82 YSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HhhhhccC-cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            99998754 45566678888887    4688999999998875

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=6.5  Score=36.73  Aligned_cols=194  Identities=12%  Similarity=0.036  Sum_probs=124.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH-HHHHH---HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265          123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLL-LQAAV---LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA  198 (467)
Q Consensus       123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l-l~a~l---~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~  198 (467)
                      ..++.-+...+.+.|...+..+...++-+..... ....+   +...+..+.|...+........+. ... -.++...+
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~w~~~~al  296 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLI-ERRVRMAL  296 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHH-HHHHHHHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHH-HHHHHHHH
Confidence            3455555566788888888887766665544322 22222   123556677887777776655443 333 45566677


Q ss_pred             HcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHH-------hc--------c--CC
Q 012265          199 AANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIK---WWLN-------AM--------T--ED  257 (467)
Q Consensus       199 ~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~---~~~~-------~~--------~--~~  257 (467)
                      ..+++..+...+..+.... ..+...+-++..+...|+.++|...|..+..   +|-.       .+        +  ..
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~  376 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD  376 (450)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred             HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHH
Confidence            8899999999998876432 2455667889999999999999999998764   2221       00        0  00


Q ss_pred             ch--HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcC
Q 012265          258 NK--LSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL  319 (467)
Q Consensus       258 ~~--~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L  319 (467)
                      ..  ....+ ..+..++..|+...|...+..++...++.+..+--.++......+.|..-+.+.
T Consensus       377 ~~~~~~~~~-~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         377 SALTQGPEM-ARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CHHHHSHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhhhcChHH-HHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            10  11122 246778899999999999998886544444444344566677777776655543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.19  E-value=4.1  Score=36.92  Aligned_cols=138  Identities=10%  Similarity=-0.057  Sum_probs=72.7

Q ss_pred             HHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH
Q 012265          126 LLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI  205 (467)
Q Consensus       126 ll~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~  205 (467)
                      ..+++.+++..|.+.+.+.     ++...+......++......-| .++...+..+|+   .+ ..+...|...|.+++
T Consensus        48 ~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la-~i~~~~~~~~~d---~l-~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          48 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLA-QMCGLHIVVHAD---EL-EELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHH-HHTTTTTTTCHH---HH-HHHHHHHHHTTCHHH
T ss_pred             HHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHH-HHHHHHhhcCHH---HH-HHHHHHHHHcCChHH
Confidence            4456677777776666543     2223333333333433333222 122111222222   22 446777888888888


Q ss_pred             HHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHH---------HHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265          206 AAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSA---------IKWWLNAMTEDNKLSVIMQEAASFKLRHG  275 (467)
Q Consensus       206 A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~a---------l~~~~~~~~~~~~~~~ll~~la~~~l~~g  275 (467)
                      .+..|+.++... .++++...++.+|.+.+ .++-...+...         +..-.     ..   .+|.++..+|.+.|
T Consensus       118 Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~-----~~---~l~~elv~Ly~~~~  188 (336)
T d1b89a_         118 LITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAE-----QA---HLWAELVFLYDKYE  188 (336)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHH-----TT---TCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHH-----Hc---CChHHHHHHHHhcC
Confidence            888888877653 36777777777776643 33333333321         11110     01   12455666777788


Q ss_pred             ChhHHHH
Q 012265          276 REEDASH  282 (467)
Q Consensus       276 ~~~~A~~  282 (467)
                      ++++|+.
T Consensus       189 ~~~~A~~  195 (336)
T d1b89a_         189 EYDNAII  195 (336)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8887764

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=14  Score=34.24  Aligned_cols=190  Identities=15%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh-hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265           36 QLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP  114 (467)
Q Consensus        36 qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~-~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~  114 (467)
                      ..+.......+.+.|..++..+....+....-.......+. .+........+...+.......             .. 
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-------------~~-  284 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-------------QS-  284 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-------------CC-
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-------------cc-
Confidence            34555556678888888888877665543333322111111 1111122222333222111100             00 


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--------
Q 012265          115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--------  186 (467)
Q Consensus       115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--------  186 (467)
                         ....--.+...+..+++..+...+..+...........+=.|..+...|+.++|...+..+... ++.-        
T Consensus       285 ---~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~L  360 (450)
T d1qsaa1         285 ---TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRI  360 (450)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHT
T ss_pred             ---hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHc
Confidence               0111123334566778888888887765322222334455666777888888888888876542 2100        


Q ss_pred             ---------------------HHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265          187 ---------------------KIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS  245 (467)
Q Consensus       187 ---------------------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~  245 (467)
                                           ... +..+..++..|+...|...+..+... .++.-...++.+..+.|.++.|+....+
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~~~-~~ra~~L~~~g~~~~A~~e~~~l~~~-~~~~~~~~la~lA~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         361 GEEYELKIDKAPQNVDSALTQGPE-MARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWDLSVQATIA  438 (450)
T ss_dssp             TCCCCCCCCCCCSCCCCHHHHSHH-HHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCccHHHhhhcChH-HHHHHHHHHcCCchHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence                                 011 23445555666666666665555432 2344444555666666666665554444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.00  E-value=13  Score=33.35  Aligned_cols=182  Identities=12%  Similarity=0.039  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265          121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA  200 (467)
Q Consensus       121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~  200 (467)
                      +...+...+...+..-+. .+......+|+...   -....+...|.+++.+.+|+..+...+.+.. ++..|+.+|.+.
T Consensus        72 ~k~~~~~l~~~~e~~la~-i~~~~~~~~~d~l~---~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~-~~~~L~~lyak~  146 (336)
T d1b89a_          72 WKEVCFACVDGKEFRLAQ-MCGLHIVVHADELE---ELINYYQDRGYFEELITMLEAALGLERAHMG-MFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHH-HTTTTTTTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcHHHHHH-HHHHHhhcCHHHHH---HHHHHHHHcCChHHHHHHHHHHHcCCccchH-HHHHHHHHHHHh
Confidence            344445555555544332 22222223333222   2233456778888888888888776666655 346777777664


Q ss_pred             CChHHHHHHHhcccc-CCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265          201 NHPFIAAESLAKIPD-IQH--------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK  271 (467)
Q Consensus       201 g~~~~A~~~L~~~~~-~~~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~  271 (467)
                      + .++=.+.+..... .+.        .-++|..++.+|.+.|+++.|+.++-.-       +++....    ...-.++
T Consensus       147 ~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~-------~~~~~~~----~~f~e~~  214 (336)
T d1b89a_         147 K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH-------PTDAWKE----GQFKDII  214 (336)
T ss_dssp             C-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS-------TTTTCCH----HHHHHHH
T ss_pred             C-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc-------chhhhhH----HHHHHHH
Confidence            3 3443444443211 110        1233556788899999999887655431       1111111    1123445


Q ss_pred             HHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh-ccCChhHHHHHHhcCCC
Q 012265          272 LRHGREEDASHLFEELVKTHGSIEALVGLVTTS-AHVDVDKAESYEKRLKP  321 (467)
Q Consensus       272 l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~-~~~d~~kA~~l~~~L~~  321 (467)
                      ...++.+..-.+..-.+..+|+  .+..|+... ..+|+.+.....++-..
T Consensus       215 ~k~~N~e~~~~~i~~yL~~~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~  263 (336)
T d1b89a_         215 TKVANVELYYRAIQFYLEFKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQ  263 (336)
T ss_dssp             HHCSSTHHHHHHHHHHHHHCGG--GHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred             HccCChHHHHHHHHHHHHcCHH--HHHHHHHHhccCCCHHHHHHHHHhcCC
Confidence            5666666555555555554443  344444443 56777777666654433