Citrus Sinensis ID: 012284

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------

MLEKERNIKTTHILKHNAIPIQIQIQQLTDNRENLITMHHSSPSAPPSTPPSMSVPRDQTKATRSVLLTTLFFSLLFLVSFYSTSSSSRRSIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCILE

cccHHccccEEEEEccccEEEEEHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHcccccccccccEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHccccccEEEcccccccccccccEEEEEccccEEEcccccEEEEccccccccEEEcccccEEEEcHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHcccccccccEEEccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccc

ccHHHccccHHHHHHcccccEEEEEEHccccHHHHHHHcccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccHHHHHcccEEEEEccccEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccHcEEEEEEEEccccEEEcccEEEEEEccccccccEEEEEcccEEEEEHHHHHEEEEcccccHHHHHHHHHccccccccEEEEEEcccccccccEEcccEEEEEEcccccccEEcccccHHHHHHcccHHHHHccccccHHHHHHHHHHHcccccccccccEccccccccccccccccEcccccHHHHHHHHHHHHHcccccccccEEcc

MLEKERniktthilkhnaipiQIQIQQLTDNREnlitmhhsspsappstppsmsvprdqtkaTRSVLLTTLFFSLLFLVSFystssssrrsidsqtqsdpflfptrpafpskipshpappslaylisgsagDAARIVRLLHAvyhpknqyllhldqsapqaeRDSLAVTiesvpvfraaqnvdvigkadfsypagstsisstLHGASILLKLSKNWDWFINlnaadyplikqddLLHILSYmpkelnfvnhtsyldrrdssrmkriivdpglylseqnpmfyvsqkrqlpnafrlFSGSAVVILSRNFVEFCIlgtdnlprTLLMYlsntpssfpnyfptilcnshqfnktvindsllyvacdkpskqnctlnstefddmiqsgaifasqfqfddpvldridreilnrspgnvvpggwclgepgnntcsvwgdadilrpgpgsrrLENRLIEMfsggnfrsqqcile

mlekerniktthilkhnaipiqIQIQQLTDNRENLITMHHsspsappstppsmSVPRDQTKATRSVLLTTLFFSLLFLVSFYStssssrrsidsqtqsdpFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHtsyldrrdssrmKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEmfsggnfrsqqcile

MLEKERNIKTTHILKHNAIPIQIQIQQLTDNRENLITMHHsspsappstppsmsvpRDQTKAtrsvllttlffsllflvsfystssssrrsIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCILE

*********TTHILKHNAIPIQIQIQQLT***********************************SVLLTTLFFSLLFLVSFYS**************************************LAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQ*******DSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILR***********LIEMF*************

*********TTHILKHNAIPIQIQIQQLTDNRENLI*************************ATRSVLLTTLFFSLLFLVSFYSTSSSSRRSIDSQTQSDPF*******************SLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWC*********SVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCI**

MLEKERNIKTTHILKHNAIPIQIQIQQLTDNRENLITM**********************KATRSVLLTTLFFSLLFLVSFY**************QSDPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCILE

MLE*ERNIKTTHILKHNAIPIQIQIQQLTDNRENLITMHHSSPSAPPSTPPSMSVPRDQTKATRSVLLTTLFFSLLFLVSFYSTSSSSRRSIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACDKPSKQNCTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCILE

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		467	2.2.26 [Sep-21-2011]
Q5QQ57		945	Xylosyltransferase 1 OS=P	yes	no	0.488	0.241	0.278	1e-16
Q86Y38		959	Xylosyltransferase 1 OS=H	yes	no	0.488	0.237	0.278	1e-16
Q9EPI1		821	Xylosyltransferase 1 (Fra	yes	no	0.483	0.275	0.275	2e-16
Q811B1		953	Xylosyltransferase 1 OS=M	yes	no	0.488	0.239	0.274	2e-16
Q5QQ56		950	Xylosyltransferase 1 OS=C	yes	no	0.479	0.235	0.273	3e-15
Q5QQ55		848	Xylosyltransferase OS=Cio	yes	no	0.453	0.25	0.270	1e-14
Q5QQ54		843	Xylosyltransferase OS=Cio	N/A	no	0.475	0.263	0.255	3e-13
Q5QQ50		865	Xylosyltransferase 2 OS=C	no	no	0.492	0.265	0.274	7e-13
Q5QQ51		865	Xylosyltransferase 2 OS=P	no	no	0.492	0.265	0.270	1e-12
Q9H1B5		865	Xylosyltransferase 2 OS=H	no	no	0.492	0.265	0.270	1e-12

>sp\|Q5QQ57\|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1	Back alignment and function desciption

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 16/244 (6%)

Query: 113 IPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIES 172
           +P++P   +   ++ G A  + ++ R+  A+YH  + Y +H+D+ +    R  L V+   
Sbjct: 307 MPANPVRIAFVLVVHGRA--SRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQVS--- 361

Query: 173 VPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSK-NWDWFINLNAADYPLIK 231
               R   NV V      +   G++ +S+ L     LL+++   WD+FINL+AADYP+  
Sbjct: 362 ----RQYSNVRVTPWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRT 417

Query: 232 QDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPN 291
            D L+  LS   +++NF+        RD++R  R      L+L     M+ +  +R +P 
Sbjct: 418 NDQLVAFLSRY-RDMNFLKSHG----RDNARFIRKQGLDRLFLECDAHMWRLGDRR-IPE 471

Query: 292 AFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKT 351
              +  GS   +L+R FVE+    TD+L   +  + S T     ++F T+L NS   +  
Sbjct: 472 GIAVDGGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTM 531

Query: 352 VIND 355
           V N+
Sbjct: 532 VDNN 535

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Pan troglodytes (taxid: 9598)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q86Y38\|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1	Back alignment and function description

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q811B1\|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ55\|XYLT_CIOIN Xylosyltransferase OS=Ciona intestinalis GN=xt PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ54\|XYLT_CIOSA Xylosyltransferase OS=Ciona savignyi GN=xt PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ50\|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ51\|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9H1B5\|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		467
224057666		428	predicted protein [Populus trichocarpa]	0.875	0.955	0.650	1e-159
225433389		432	PREDICTED: xylosyltransferase 1 [Vitis v	0.892	0.965	0.620	1e-155
255554252		438	transferase, transferring glycosyl group	0.888	0.947	0.628	1e-153
449433203		470	PREDICTED: xylosyltransferase-like [Cucu	0.871	0.865	0.629	1e-153
147866720		459	hypothetical protein VITISV_043589 [Viti	0.892	0.908	0.579	1e-149
449487608		445	PREDICTED: xylosyltransferase 1-like [Cu	0.835	0.876	0.632	1e-148
356533377		449	PREDICTED: xylosyltransferase 2-like [Gl	0.783	0.815	0.634	1e-140
297831228		416	glycosyltransferase family 14 protein [A	0.781	0.877	0.631	1e-138
15229570		417	Core-2/I-branching beta-1,6-N-acetylgluc	0.781	0.875	0.612	1e-134
46518433		417	At3g24040 [Arabidopsis thaliana]	0.781	0.875	0.610	1e-134

>gi\|224057666\|ref\|XP_002299292.1\| predicted protein [Populus trichocarpa] gi\|222846550\|gb\|EEE84097.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/412 (65%), Positives = 334/412 (81%), Gaps = 3/412 (0%)

Query: 58  DQTKATRSVLLTTLFFSLLFLVSFYSTSSSSRRSIDSQTQSDPFLFPTRPAFPSKIPSHP 117
           D TK T  ++LTT FFSLLF+ +  S+ S +  S+ +  + DP+LFP R    +KIPS P
Sbjct: 18  DNTKTTLFIILTTSFFSLLFIFTL-SSYSFNTSSLSTHGRPDPYLFPNRQPTFTKIPSDP 76

Query: 118 APPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFR 177
            PPS+AYLISGS GD  R++RLL+A YHPKNQYLLHLD SAPQ +RD LA++++SVP+F+
Sbjct: 77  TPPSIAYLISGSKGDLDRVLRLLYATYHPKNQYLLHLDLSAPQTDRDQLALSVQSVPIFK 136

Query: 178 AAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLH 237
           AAQNV+VIGKADF+YP GS++IS+TLHGA+ILL+L K WDWF+NL AADYPL+  DDLLH
Sbjct: 137 AAQNVNVIGKADFAYPKGSSTISATLHGAAILLRLPKKWDWFVNLGAADYPLVTPDDLLH 196

Query: 238 ILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFS 297
           ILSY+PK+LNFVNH+SY+  R+S ++K IIVDPGLYLSE++ MFY +QKR LPN+FRLF+
Sbjct: 197 ILSYLPKDLNFVNHSSYIGWRESRQLKPIIVDPGLYLSEKSEMFYATQKRDLPNSFRLFT 256

Query: 298 GSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSL 357
           G++    SRN +E CILG DNLPR L+MYLSNTPSS  NYFPT++CNS QFN+TVIN +L
Sbjct: 257 GTSFSFASRNLIEHCILGVDNLPRILMMYLSNTPSSLINYFPTVICNSRQFNRTVINHNL 316

Query: 358 LYVACDKPSKQN-CTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPG 416
            YVA +KPSK+    LNS+EFD MIQSGA FA+QF+ DDPVLDRID+++L R+PG VVPG
Sbjct: 317 QYVAFEKPSKKVPRALNSSEFDAMIQSGAAFATQFKLDDPVLDRIDQDVLGRNPGEVVPG 376

Query: 417 GWCL-GEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQCILE 467
           GWCL GEPGN TCS WGDADILRPG G+ RLE  ++ + S G F S+QCI+E
Sbjct: 377 GWCLGGEPGNITCSAWGDADILRPGTGAARLEKLIVRLLSNGEFHSRQCIVE 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225433389\|ref\|XP_002282998.1\| PREDICTED: xylosyltransferase 1 [Vitis vinifera] gi\|297741901\|emb\|CBI33336.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255554252\|ref\|XP_002518166.1\| transferase, transferring glycosyl groups, putative [Ricinus communis] gi\|223542762\|gb\|EEF44299.1\| transferase, transferring glycosyl groups, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449433203\|ref\|XP_004134387.1\| PREDICTED: xylosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147866720\|emb\|CAN80510.1\| hypothetical protein VITISV_043589 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449487608\|ref\|XP_004157711.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356533377\|ref\|XP_003535241.1\| PREDICTED: xylosyltransferase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|297831228\|ref\|XP_002883496.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata] gi\|297329336\|gb\|EFH59755.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15229570\|ref\|NP_189046.1\| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi\|9294673\|dbj\|BAB03022.1\| unnamed protein product [Arabidopsis thaliana] gi\|51971969\|dbj\|BAD44649.1\| unknown protein [Arabidopsis thaliana] gi\|332643326\|gb\|AEE76847.1\| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|46518433\|gb\|AAS99698.1\| At3g24040 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		467
TAIR\|locus:2076181		417	AT3G24040 [Arabidopsis thalian	0.781	0.875	0.612	7e-125
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.760	0.794	0.505	2.2e-98
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.749	0.806	0.490	2.7e-91
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.794	0.829	0.457	1.7e-89
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.770	0.911	0.471	1.3e-86
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.760	0.843	0.463	6.9e-86
UNIPROTKB\|Q8H035		417	OJ1172F09.8 "Putative uncharac	0.758	0.848	0.464	3e-85
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.734	0.765	0.474	2.4e-83
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.743	0.818	0.450	7.6e-80
TAIR\|locus:2096399		378	UNE7 "unfertilized embryo sac	0.657	0.812	0.453	2.9e-76

TAIR\|locus:2076181 AT3G24040 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 228/372 (61%), Positives = 290/372 (77%)

Query:    99 DPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSA 158
             DP LFP+     SKI +  APPS+AYLISGS+GD  RI+RLL+A YHP+N+YLLHLD  A
Sbjct:    50 DPRLFPSS----SKIAADTAPPSIAYLISGSSGDTRRILRLLYATYHPRNRYLLHLDSLA 105

Query:   159 PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDW 218
              Q+ERD LAV ++ VP+FRAA+NVDVIGK DF+Y  GS+ ++STLHGASILL+LS  WDW
Sbjct:   106 TQSERDRLAVDVQDVPIFRAARNVDVIGKPDFAYQRGSSPMASTLHGASILLRLSGTWDW 165

Query:   219 FINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQN 278
             F++++  DYPL+ QD+LLHI+S++PK+LNFVNHTSY+  ++S ++K +IVDPGLYL E+ 
Sbjct:   166 FVSISVDDYPLVTQDELLHIMSHLPKDLNFVNHTSYIGWKESRKLKPVIVDPGLYLVEKT 225

Query:   279 PMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYF 338
              MF+ SQKR+LP AF+LFSG +  ILSRNF+E C+LGTDN PRTLLMYLSNTP S  NYF
Sbjct:   226 DMFFASQKRELPKAFKLFSGPSFSILSRNFMEHCVLGTDNFPRTLLMYLSNTPDSLSNYF 285

Query:   339 PTILCNSHQFNKTVINDSLLYVACDKPSKQNC-TLNSTEFDDMIQSGAIFASQFQFDDPV 397
             PTILCN+  F KT++N++LLY+A +  SK+    L+  EF +M+ SGA FA  F++DD V
Sbjct:   286 PTILCNTDTFKKTIMNNNLLYLASNDTSKERYHQLDHKEFTEMVDSGAAFARGFRYDDTV 345

Query:   398 LDRIDREILNRSPGNVVPGGWCLGEPGNN--TCSVWGDADILRPGPGSRRLENRLIEMFS 455
             LDRID E+L R PG VVPGGWCLG+   N  +CSVWGD+ ILRPG GS RLE R++E+ S
Sbjct:   346 LDRIDHELLGRKPGEVVPGGWCLGDSSKNRSSCSVWGDSGILRPGSGSDRLERRIVELLS 405

Query:   456 GGNFRSQQCILE 467
                FR  QC+ E
Sbjct:   406 NDWFRLHQCVPE 417

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8H035 OJ1172F09.8 "Putative uncharacterized protein OJ1172F09.8" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		467
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	1e-127
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	2e-53

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  376 bits (967), Expect = e-127
 Identities = 184/413 (44%), Positives = 257/413 (62%), Gaps = 18/413 (4%)

Query: 65  SVLLTTLFFSLLFLVSFYSTSSSSRRSIDSQTQSDPFLF--PTRPAFP---SKIPSHPAP 119
            +++T+L    L   SF     SS R+I+S     P      TR  F         HP P
Sbjct: 13  PLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPP 72

Query: 120 -----PSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVP 174
                P  AYL+SGS GD  ++ R L A+YHP+NQY++HLD  +P  ER  LA  +E+ P
Sbjct: 73  VQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDP 132

Query: 175 VFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDD 234
           +F    NV +I KA+     G T +++TLH  +ILLK SK+WDWFINL+A+DYPL+ QDD
Sbjct: 133 MFSKVGNVYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDD 192

Query: 235 LLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFR 294
           L+H  S + + LNF+ HTS L  ++  R   +I+DPGLY + ++ +++V+ +R LP AF+
Sbjct: 193 LIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRSLPTAFK 252

Query: 295 LFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVIN 354
           LF+GSA ++LSR+FVE+CI G DNLPRTLLMY +N  SS   YF T++CN  +F KT +N
Sbjct: 253 LFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVN 312

Query: 355 DSLLYVACDKPSKQN---CTLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPG 411
             L Y++ D P KQ+    +LN T  + MI SGA FA +F+ DDPVLD+ID+E+L R  G
Sbjct: 313 HDLHYISWDNPPKQHPHTLSLNDT--EKMIASGAAFARKFRRDDPVLDKIDKELLGRKNG 370

Query: 412 NVVPGGWCLGEPGNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQC 464
           +  PGGWC G+P    CS  GD   ++PGPG++RL+  +  +         QC
Sbjct: 371 SFTPGGWCSGKP---KCSRVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQC 420

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		467
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	93.79
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	88.68
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	85.14
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	84.82
PRK11204		420	N-glycosyltransferase; Provisional	83.03
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	80.6

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=6e-113  Score=889.23  Aligned_cols=398  Identities=44%  Similarity=0.785  Sum_probs=366.7

Q ss_pred             ccchHH--HHHHHHHHHHHHHHhh----cCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEE
Q 012284           61 KATRSV--LLTTLFFSLLFLVSFY----STSSS-----------SRRSIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLA  123 (467)
Q Consensus        61 ~~~~~~--~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~kiA  123 (467)
                      ++|||+  ++++++++++|+++++    .++.+           ...+++.+.|+|+++.+.+.    +.+.++.|||||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~A   81 (421)
T PLN03183          6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPH----PPPVQDKLPRFA   81 (421)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCC----CCCCCCCCCeEE
Confidence            789999  8888998877655333    11111           01245666788988876542    123456789999


Q ss_pred             EEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHHH
Q 012284          124 YLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTL  203 (467)
Q Consensus       124 YLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~AtL  203 (467)
                      |||+||+||.+|++|||++||||+|+||||+|+||+..++.+++..|+.+|++.+++||+|+++++.|+|||+|||+|||
T Consensus        82 YLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL  161 (421)
T PLN03183         82 YLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTL  161 (421)
T ss_pred             EEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHH
Confidence            99999988999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecccCCCCccccceeeeeeCCCcccccCCCccee
Q 012284          204 HGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYV  283 (467)
Q Consensus       204 ~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~s~~gwk~~~r~~~~i~d~glyl~~k~~~~~~  283 (467)
                      +||+.|++.+.+|||||||||+||||+||+||++.|..+|+|+|||++++..+|++.+|+++++++||+|..+++.++|.
T Consensus       162 ~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~  241 (421)
T PLN03183        162 HACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWV  241 (421)
T ss_pred             HHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhh
Confidence            99999999889999999999999999999998887777899999999998899999999999999999998888888999


Q ss_pred             cccCCCCCCceeecccceeeecHHHHHHhhhccCCcHHHHHHhhCCCCCCCCchHHHHhhcCccCCcccccCceEEEeCC
Q 012284          284 SQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACD  363 (467)
Q Consensus       284 ~~kR~lP~~~~lf~GS~W~~LSR~fveyll~~~dnlpr~ll~yfk~t~~pDE~fFqTVl~NS~~F~~t~vn~nLRyI~W~  363 (467)
                      .++|.+|.++++|+||+||+|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+
T Consensus       242 ~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~  321 (421)
T PLN03183        242 TPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWD  321 (421)
T ss_pred             hhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcc-ccChHHHHHHhhcCceEEeccCCChHHHHHHHHHHhccCCCCCcCCccccCCCCCCCccccCCCCcccCCCc
Q 012284          364 KPSKQNC-TLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPG  442 (467)
Q Consensus       364 ~~~k~hP-~Lt~~D~~~L~~S~alFARKF~~D~~vLd~ID~~ll~r~~~~~~pg~W~~~~~~~~~c~~~g~~~~~~pg~~  442 (467)
                      +++++|| +|+.+||++|++|+++|||||+.|++|||+||++|++|..++++|||||.|   .||||+|||+++||||||
T Consensus       322 ~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~---~~~c~~~~~~~~~~p~~~  398 (421)
T PLN03183        322 NPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG---KPKCSRVGDPAKIKPGPG  398 (421)
T ss_pred             CCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC---CCcccccCCcCccCCCcH
Confidence            9988899 999999999999999999999999999999999999999999999999987   579999999999999999


Q ss_pred             hHHHHHHHHHHccCCCCCCCCcc
Q 012284          443 SRRLENRLIEMFSGGNFRSQQCI  465 (467)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~c~  465 (467)
                      |+||++||.+||++++||++||+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        399 AQRLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             HHHHHHHHHHHhchhccccccCC
Confidence            99999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		467
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		6e-09
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		1e-08

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 40/298 (13%) Query: 138 RLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGST 197 RLL A+Y P+N Y +H+D+ +AE LA F NV V + + A T Sbjct: 101 RLLRAIYMPQNFYCIHVDR---KAEESFLAAVQGIASCF---DNVFVASQLESVVYASWT 154 Query: 198 SISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDR 257 + + L+ L +++ NW + INL+ D+P+ +++ L E N ++ Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214 Query: 258 RDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTD 317 + + + +VD L + K P LFSGSA +++R +V + +L + Sbjct: 215 EERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGY-VLENE 266 Query: 318 NLPRTL----------------LMYLSNTPSSFPNYFPTILCNSH--------QFNKTVI 353 N+ + + + + P SFP+ L + + Q+ + + Sbjct: 267 NIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDV 326 Query: 354 NDSLLYVACDKPSKQN-CTLNSTEFDDMIQSGAIFASQFQFD-DPVLDRIDREILNRS 409 ++ Y C ++ C + + M++ +FA++F D DP + E L R Sbjct: 327 SNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRK 384

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		467
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	4e-48
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  169 bits (428), Expect = 4e-48
 Identities = 63/351 (17%), Positives = 134/351 (38%), Gaps = 49/351 (13%)

Query: 91  SIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQY 150
           + D  +      +   P     +        +AY I         + RLL A+Y P+N Y
Sbjct: 60  TRDCASFIRTRKYIVEP-----LTKEEVGFPIAYSIVVH-HKIEMLDRLLRAIYMPQNFY 113

Query: 151 LLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILL 210
            +H+D+ A ++   ++              NV V  + +    A  T + + L+    L 
Sbjct: 114 CIHVDRKAEESFLAAVQGIASCFD------NVFVASQLESVVYASWTRVKADLNCMKDLY 167

Query: 211 KLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDP 270
           +++ NW + INL   D+P+    +++  L     E N        ++ +  + +  +VD 
Sbjct: 168 RMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDG 227

Query: 271 GLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNT 330
            L  +          K   P    LFSGSA  +++R +V + +   +   + L+ +  +T
Sbjct: 228 KLTNTGIV-------KAPPPLKTPLFSGSAYFVVTREYVGYVL--ENENIQKLMEWAQDT 278

Query: 331 PSSFPNYFPTIL---------CNSHQFNKTVINDSLLYV----------------ACDKP 365
            S     + TI           +S++++ + +N    +V                 C   
Sbjct: 279 YSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGV 338

Query: 366 SKQN-CTLNSTEFDDMIQSGAIFASQF--QFDDPVLDRIDREILNRSPGNV 413
             ++ C   + +   M++   +FA++F    D   +  +D  +  ++  N+
Sbjct: 339 HVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRKALENL 389

PyMOL of 2gak

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		467
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0
1qg8_A		255	Protein (spore coat polysaccharide biosynthesis P	82.73
3bcv_A		240	Putative glycosyltransferase protein; protein stru	82.26

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-63  Score=517.79  Aligned_cols=280  Identities=20%  Similarity=0.280  Sum_probs=241.4

Q ss_pred             CCCCCCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284          114 PSHPAPPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP  193 (467)
Q Consensus       114 ~~~~~p~kiAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W  193 (467)
                      +.++.+|||||+|++|+ |+++++||++++|||+|+||||+|+|++..++..++...      ++++||+|++++..|.|
T Consensus        78 ~~~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~------~~f~NV~v~~~~~~v~W  150 (391)
T 2gak_A           78 TKEEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIA------SCFDNVFVASQLESVVY  150 (391)
T ss_dssp             CHHHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHH------HTCTTEEECSSCCCCCT
T ss_pred             CccccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHH------hcCCCEEEeccCccccc
Confidence            34566799999999998 999999999999999999999999999988777765432      57999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecccCCCCccccc-eeeeeeCCCc
Q 012284          194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSR-MKRIIVDPGL  272 (467)
Q Consensus       194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~s~~gwk~~~r-~~~~i~d~gl  272 (467)
                      ||+|||+|+|+||+.||+...+|||||||||+||||+|+++|.+||+.+ +|+|||++.++.+|++.+. +++.+.++++
T Consensus       151 Gg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l  229 (391)
T 2gak_A          151 ASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEERWKKRYAVVDGKL  229 (391)
T ss_dssp             TSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSHHHHEEEEEETTEE
T ss_pred             CCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCcccccceEeeeeccccce
Confidence            9999999999999999987789999999999999999999999999974 7999999998888876532 2334455543


Q ss_pred             ccccCCCcceecccCCCCCCceeecccceeeecHHHHHHhhhccCCcHHHHHHhhCCCCCCCCchHHHHhhcC-------
Q 012284          273 YLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNS-------  345 (467)
Q Consensus       273 yl~~k~~~~~~~~kR~lP~~~~lf~GS~W~~LSR~fveyll~~~dnlpr~ll~yfk~t~~pDE~fFqTVl~NS-------  345 (467)
                      +       ++..++|.+|.++++|+|||||+|||+||+||++  |++++.+++||+++++|||+||||++.|+       
T Consensus       230 ~-------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~  300 (391)
T 2gak_A          230 T-------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFP  300 (391)
T ss_dssp             E-------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCC
T ss_pred             e-------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccc
Confidence            3       2345678889999999999999999999999998  66688899999999999999999998764       


Q ss_pred             --ccCCcccccCceEEEeCCCCCC------Ccc-----------ccChHHHHHHhhcCceEEeccCC--ChHHHHHHHHH
Q 012284          346 --HQFNKTVINDSLLYVACDKPSK------QNC-----------TLNSTEFDDMIQSGAIFASQFQF--DDPVLDRIDRE  404 (467)
Q Consensus       346 --~~F~~t~vn~nLRyI~W~~~~k------~hP-----------~Lt~~D~~~L~~S~alFARKF~~--D~~vLd~ID~~  404 (467)
                        ..|+++++|++||||+|++..+      .||           +|+.+|++.|.+|+++|||||++  |++||+|||+.
T Consensus       301 ~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~  380 (391)
T 2gak_A          301 SSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEH  380 (391)
T ss_dssp             SSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHH
T ss_pred             cccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHH
Confidence              3456677899999999984211      122           59999999999999999999997  78999999999


Q ss_pred             HhccCC
Q 012284          405 ILNRSP  410 (467)
Q Consensus       405 ll~r~~  410 (467)
                      |.+|.-
T Consensus       381 l~~r~~  386 (391)
T 2gak_A          381 LRRKAL  386 (391)
T ss_dssp             HHHHHH
T ss_pred             Hhhhhh
Confidence            988754

PyMOL of 2gak

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*	Back alignment and structure

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		467
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	87.66

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.66  E-value=3.6  Score=35.54  Aligned_cols=116  Identities=5%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             CcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceec---c
Q 012284          120 PSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSY---P  193 (467)
Q Consensus       120 ~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~---W  193 (467)
                      |++..+|.+++ ..+.|++.|+.+-   .+ +.=+|=+|-.+++...+.++++.       ...+|+++.......   -
T Consensus         1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~-~~eiivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYN-KSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESS-CTTTHHHHHHHHHTCSCC-CEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCC-CHHHHHHHHHHHHhCCCC-CeEEEEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            68899999998 5688999999873   23 34456666667777666665442       346687775432211   1


Q ss_pred             CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHhcCCCCCceee
Q 012284          194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILSYMPKELNFVN  250 (467)
Q Consensus       194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls~~~rg~NFIe  250 (467)
                      ...+.-.|-=.|++.+     .-||++.|-+.|++... .+.+..+|.. +.+..++-
T Consensus        72 ~~~g~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v~  123 (255)
T d1qg8a_          72 EKTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVIY  123 (255)
T ss_dssp             SSCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEEE
T ss_pred             ccchhccccccccccc-----ccccccccccccccccchHHHHHHHHHh-CCCCCeEe
Confidence            2222222222333332     35899999999999754 4455667765 33555553

PyMOL of d1qg8a_