Citrus Sinensis ID: 012286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccccccccHccccccccccccccccHHHHHcccccccccHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccc
Coil and Loop (DISEMBL)
MVSMGVKELAMIKEYVLLVAGFIHgscrgdfklnnfqdgvlSSAFMVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKfnedgenqisldskanmkpllegngdnl
Flexible Loop (DISEMBL)
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENqisldskanmkpllegngdnl
Low Complexity Region (SEG)
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered region (IsUnstruct)
******KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Disordered Region (DISOPRED)
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*AE****QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSID*****************************
Disordered Region (DISEMBL)
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered Region (DISPRO)
**SMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ********************GSEASN****VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSMGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.862	0.830	0.683	1e-167
F4IKF6	510	Probable sphingolipid tra	no	no	0.866	0.792	0.676	1e-161
Q6NMN6	492	Probable sphingolipid tra	no	no	0.851	0.806	0.606	1e-145
Q5XGK0	526	Protein spinster homolog	N/A	no	0.725	0.642	0.277	1e-26
A8WGF7	526	Protein spinster homolog	yes	no	0.746	0.661	0.266	4e-26
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.714	0.550	0.271	1e-23
Q8IVW8	549	Protein spinster homolog	yes	no	0.791	0.672	0.238	2e-23
A2SWM2	504	Protein spinster homolog	yes	no	0.791	0.732	0.246	3e-23
Q91VM4	549	Protein spinster homolog	yes	no	0.791	0.672	0.233	7e-22
Q9D232	514	Protein spinster homolog	no	no	0.811	0.735	0.259	4e-21

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/433 (68%), Positives = 337/433 (77%), Gaps = 31/433 (7%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SF
Sbjct: 81  QGDFNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSF 140

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGV
Sbjct: 141 DFWSITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGV 200

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VGS L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK +            NLN
Sbjct: 201 VGSVLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN 250

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
                          +  +G        S   +D K+LL +KVYV N+LGYIAYNFV+GA
Sbjct: 251 ---------------VLPVGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGA 290

Query: 268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 327
           YSYWGPKAGYNIY M NADM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF
Sbjct: 291 YSYWGPKAGYNIYKMENADMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTF 350

Query: 328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 387
           +GAI C  AFC  S+Y FLALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSI
Sbjct: 351 IGAIFCFAAFCFKSMYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSI 410

Query: 388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQI 447
           HIFGDVPSSPLVGVLQD+VNNWR T+L LT + F AA IW +GIFL S+D++NED E   
Sbjct: 411 HIFGDVPSSPLVGVLQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPD- 469

Query: 448 SLDSKANMKPLLE 460
           ++  ++   PLL+
Sbjct: 470 AVTRESTAAPLLQ 482

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  569 bits (1466), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/423 (67%), Positives = 331/423 (78%), Gaps = 19/423 (4%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +G F L+NF+DGVLSS+FMVGLL+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF
Sbjct: 94  QGHFNLSNFEDGVLSSSFMVGLLIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSF 148

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
            FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG 
Sbjct: 149 AFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGY 208

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VG H +WRYAFWGEA+LM PFAVL F++KPLQLKG            +   + +    ++
Sbjct: 209 VGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG------------SETLKNNNRLQVD 256

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
           + +  D  + + E S  S   + F    + F++D KVL +EKV+VVNVLGY++YNFVIGA
Sbjct: 257 NEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGA 315

Query: 268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 327
           YSYWGPKAGYNIY M NADM+FG VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATF
Sbjct: 316 YSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATF 375

Query: 328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 387
           LGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYVCLH VKPSLR LSMAISTV+I
Sbjct: 376 LGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAI 435

Query: 388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG-IFLKSIDKFNEDGENQ 446
           HIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA IWF+G I L S    +E    Q
Sbjct: 436 HIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAIWFIGKINLNSFYSNDESFLVQ 495

Query: 447 ISL 449
           I L
Sbjct: 496 IKL 498

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  514 bits (1324), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/414 (60%), Positives = 312/414 (75%), Gaps = 17/414 (4%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +G+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S+
Sbjct: 72  QGEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSY 131

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           +FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG 
Sbjct: 132 NFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGY 191

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQVVASVSEGSEASNL 206
           +G+HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K          ++A   
Sbjct: 192 IGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE-- 249

Query: 207 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 266
                   + Q   ++ KS       N +  F +D K L  EKV++VNVLGYI YNFVIG
Sbjct: 250 --------ASQIKTKTPKS------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIG 295

Query: 267 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 326
           AYSYWGPKAG+ IY M NADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T
Sbjct: 296 AYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAAST 355

Query: 327 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 386
            LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV 
Sbjct: 356 LLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVL 415

Query: 387 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 440
           IHI GDVPSSPL G +QDH+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ N
Sbjct: 416 IHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSN 469

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 173/396 (43%), Gaps = 58/396 (14%)

Query: 31  FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFD 88
           F +++   G++ + F+   +  +P+F  L   +N   ++ VG+S W+  T  +   S+  
Sbjct: 90  FNISDSNSGLVQTVFICSYMFLAPVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQY 149

Query: 89  FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV 148
           FW   I R LVGVGEAS+ ++A   I D     Q+T  LS FY   P G  LGY+    V
Sbjct: 150 FWLFLITRGLVGVGEASYSTIAPTIIADLFLADQRTRMLSFFYFATPVGCGLGYI----V 205

Query: 149 GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND 208
           GS +      W  A+ + P   L  V+  +                              
Sbjct: 206 GSEMTSAAGDWHWALRVTPGLGLLAVLLLI------------------------------ 235

Query: 209 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY 268
            V+E+    A ER        R L   S +S D K LL+   ++++  G+    FV GA 
Sbjct: 236 FVAEEPPRGALERK-----TDRPLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGAL 289

Query: 269 SYWGP----KAGYNIYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATI 315
           + WGP    ++   IY        + N D  M+FGG+T + GI+G ++G  I  +   T 
Sbjct: 290 ALWGPTYLMRSRMVIYKSKPCEGGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTN 349

Query: 316 SNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK 372
             A  L+ A   + +   L    AF  +SL        +GE L+    A V  + L+ V 
Sbjct: 350 PRADPLVCAVGMISSAPFLFLSLAFADTSLVATYVFIFIGETLLSLNWALVADILLYVVI 409

Query: 373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN 408
           P+ R+ + A+  V  H+ GD  S  L+GV+ D +  
Sbjct: 410 PTRRSTAEALQIVVSHLLGDAGSPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 178/409 (43%), Gaps = 61/409 (14%)

Query: 19  VAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 78
           VAG +    + D+ +++   G++ + F+   +  +P+F  L   +N   ++ +G+S W+ 
Sbjct: 79  VAGVL-SDIKEDYHISDSNSGLVQTVFICSYMFLAPVFGYLGDRYNRKLIMCIGISFWSL 137

Query: 79  AT--AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 136
            T  +   S   FW   + R LVGVGEAS+ ++A   I D     Q++  LS FY   P 
Sbjct: 138 VTLLSSFVSKQYFWLFLLTRGLVGVGEASYSTIAPTIIADLFLADQRSRMLSFFYFATPV 197

Query: 137 GVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA 195
           G  LGY+ G  V S   +W +A                                  +V  
Sbjct: 198 GCGLGYIAGSKVTSTAGDWHWAL---------------------------------RVTP 224

Query: 196 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 255
            +   +    +   V+++    A ER        R L   S FS D K LL+   ++++ 
Sbjct: 225 GLGLVAVLLLI--FVAKEPPRGALERK-----SDRPLTNTSWFS-DVKALLKNPSFILST 276

Query: 256 LGYIAYNFVIGAYSYWGP----KAGYNIYH-------MSNAD--MMFGGVTIVCGIVGTI 302
            G+    FV GA + WGP    ++   IY        + N D  M+FGG+T V G++G +
Sbjct: 277 FGFTTVAFVTGALALWGPTYLMRSRRVIYKTEPCQGGICNYDDSMIFGGITCVTGVLGVL 336

Query: 303 SGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFAT 359
           +G  I  +   T   A  L+ A   + +   L    AF  +SL    A   +GE L+   
Sbjct: 337 TGVEISKRYRKTNPRADPLVCAVGMISSAPFLYLSLAFADTSLVATYAFIFIGETLLSLN 396

Query: 360 QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN 408
            A V  + L+ V P+ R+ + A+  V  H+ GD  S  L+GV+ D +  
Sbjct: 397 WALVADILLYVVIPTRRSTAEALQIVVSHLLGDAGSPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 173/394 (43%), Gaps = 61/394 (15%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           R DF + N   G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T       
Sbjct: 142 RNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMK 201

Query: 88  DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 146
            F W IA  R LVG+GEAS+ ++A   I D      ++  L++FY  IP G  LGY+ G 
Sbjct: 202 QFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGS 260

Query: 147 VVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS 204
              +HL  +WR+A     IL +    L  +IK                 V   SEGS   
Sbjct: 261 KT-AHLANDWRWALRVTPILGIVAVFLILLIK---------------DPVRGHSEGSH-- 302

Query: 205 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 264
           NL                           + + + QD K L++ + ++++  G+    FV
Sbjct: 303 NL---------------------------EATTYKQDIKALVRNRSFMLSTAGFTCVAFV 335

Query: 265 IGAYSYWGPKAGYNIYHMS--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATI 315
            GA ++WGP   Y    M   N +++       FG +T++ G++G   G F+   +    
Sbjct: 336 AGALAWWGPSFIYLGMKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRY 395

Query: 316 SNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK 372
             A  ++ A   L +   LT  CL   S+  G  AL   G+L +    A V  + L+ V 
Sbjct: 396 PTADPVICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVV 455

Query: 373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV 406
           P+ R+ + A   +  H  GD  S  LVG + + +
Sbjct: 456 PTRRSTAEAFQILISHALGDAGSPYLVGAISEAI 489

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 182/449 (40%), Gaps = 80/449 (17%)

Query: 31  FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSF 87
           F + +   G+L S F+   +VA+PIF  L    N   ++  G+  W   TF+++     +
Sbjct: 133 FGVKDRGAGLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY 192

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
            FW + + R LVG+GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  
Sbjct: 193 -FWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSS 251

Query: 148 VGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 206
           V     +W +A     +L +    L  ++ P   +G A                      
Sbjct: 252 VKQAAGDWHWALRVSPVLGMITGTLILILVPATKRGHA---------------------- 289

Query: 207 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 266
                + + DQ   R              + + +D K L++ + YV + L   A +F  G
Sbjct: 290 -----DQLGDQLKAR--------------TSWLRDMKALIRNRSYVFSSLATSAVSFATG 330

Query: 267 AYSYWGP------KAGYNIYHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGA 313
           A   W P      +         N+        ++FG +T   G +G ++G         
Sbjct: 331 ALGMWIPLYLHRAQVVQKTAETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRL 390

Query: 314 TISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS 370
               A  L+ A   LG+   I  +     SS+ G      VGE L+F+  A    + ++ 
Sbjct: 391 KTQRADPLVCAVGMLGSAIFICLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYV 450

Query: 371 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT----------------- 413
           V P+ RA ++A+ + + H+ GD  S  L+G + D +    K +                 
Sbjct: 451 VIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPF 510

Query: 414 -LALTSIFFLAAGIWFVGIFLKSIDKFNE 441
            + L  +FFLA  ++FV    ++  + N+
Sbjct: 511 VVVLGGMFFLATALFFVSDRARAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 184/455 (40%), Gaps = 86/455 (18%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +  FK+ +   G+L + F+   +VA+PIF  L    N   ++  G+  W+  T    SSF
Sbjct: 83  QKQFKVGDSSAGLLQTVFICSFMVAAPIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSF 140

Query: 88  ----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV 143
                +W + + R LVG+GE+S+ S++   I D     ++T  LS+FY+ IP G  LGY+
Sbjct: 141 ITKEYYWLLVLSRCLVGIGESSYSSISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYI 200

Query: 144 YGGV---VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG 200
            G +    G H  W +A     +L L    L  +                      VSE 
Sbjct: 201 LGSIAKDAGGH--WYWALRVSPMLGLTAGTLILIF---------------------VSEP 237

Query: 201 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 260
              S          +DQ   R          L   + +  D K L + + YV + L   A
Sbjct: 238 KRGS----------ADQPGGR----------LKTRTSWVCDMKALAKNRSYVFSSLASAA 277

Query: 261 YNFVIGAYSYWGPK-----------AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFI 307
            +F  GA+  W P+           A    Y    S   ++FG +T V G++G + G   
Sbjct: 278 VSFATGAFGIWIPQYLVRAQVVQKSAESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVT 337

Query: 308 LDQMGATISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN 364
                     A  L+ A + LG+   I  +      S+ G      +GE L+F   A   
Sbjct: 338 TRLCRQKTERADPLVCAVSMLGSAIFICLIFVVAKKSIVGAYICIFIGETLLFLNWAITA 397

Query: 365 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT----------- 413
            + ++ V P+ RA ++A    + H+ GD  S  L+G++ D +     T+           
Sbjct: 398 DILMYVVIPTRRATAVAFQGFTSHLLGDAGSPYLIGLISDSLQESYATSEIWQFLSLGYA 457

Query: 414 -------LALTSIFFLAAGIWFVGIFLKSIDKFNE 441
                  + L  +FFLA  ++F+    K+  + N+
Sbjct: 458 LMLCPFVIVLGGMFFLATALFFLDDRDKAAKQVNQ 492

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 180/449 (40%), Gaps = 80/449 (17%)

Query: 31  FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSF 87
           F + +   G+L S F+   +VA+PIF  L    N   ++  G+  W   TF+++     +
Sbjct: 133 FGVKDRGAGLLQSVFICSFMVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY 192

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
            FW + + R LVG+GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  
Sbjct: 193 -FWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSS 251

Query: 148 VGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 206
           V     +W +A     +L +    L  ++ P   +G A    G+                
Sbjct: 252 VKQAAGDWHWALRVSPVLGMITGTLILILVPATKRGHADQLGGQ---------------- 295

Query: 207 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 266
                                    L   + + +D K L++ + YV + L   A +F  G
Sbjct: 296 -------------------------LKARTSWLRDMKALIRNRSYVFSSLATSAVSFATG 330

Query: 267 AYSYWGP------KAGYNIYHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGA 313
           A   W P      +         N+        ++FG +T   G +G ++G         
Sbjct: 331 ALGMWIPLYLHRAQVVQKTAETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRL 390

Query: 314 TISNAFKLLSAATFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS 370
               A  L+ A   LG+   I  +     +S+ G      VGE L+F+  A    + ++ 
Sbjct: 391 RTQRADPLVCAVGMLGSAIFICLIFVAAKTSIVGAYICIFVGETLLFSNWAITADILMYV 450

Query: 371 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT----------------- 413
           V P+ RA ++A+ + + H+ GD  S  L+G + D +    K +                 
Sbjct: 451 VIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPF 510

Query: 414 -LALTSIFFLAAGIWFVGIFLKSIDKFNE 441
            + L  +FFLA  ++F+    K+  + N+
Sbjct: 511 VVVLGGMFFLATALFFLSDRAKAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

>sp|Q9D232|SPNS3_MOUSE Protein spinster homolog 3 OS=Mus musculus GN=Spns3 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 188/458 (41%), Gaps = 80/458 (17%)

Query: 31  FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
           F +++   G+L + F+  LLV++P+F  L   +N   ++  G+ +W+   AG  SSF   
Sbjct: 80  FHISDSHAGLLQTVFISCLLVSAPVFGYLGDRYNRKAILSFGILLWS--GAGLSSSFISY 137

Query: 88  -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 146
              W   + R  VG G AS+ ++A   + D     Q+T  L++FY+ IP G  LGYV G 
Sbjct: 138 QYSWLFFLSRGFVGTGAASYSTIAPTVLGDLFVKDQRTCALAVFYIFIPVGSGLGYVLGS 197

Query: 147 VVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN 205
            V     NWR+     A+ ++P                                 + A  
Sbjct: 198 TVAELTGNWRW-----ALRLMP------------------------------CLDAMALA 222

Query: 206 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI 265
           L   +  D+   A+E+     GE       S + +D + L +   +V + LG  A  FV 
Sbjct: 223 LLILLVPDVPRGAAEKQ----GEVAVRAPRSSWCEDVRYLGRNWSFVFSTLGVTAIAFVT 278

Query: 266 GAYSYWGPKAGY--NIYH-----------MSNADMMFGGVTIVCGIVGTISGGFILDQMG 312
           GA  +W PK  +   + H            S   ++FG +T+  GI+G + G     +  
Sbjct: 279 GALGFWAPKFLFEARVVHGLQLPCFQEQCHSQDSLIFGALTVATGIIGVMLGAEASRRYK 338

Query: 313 ATISNAFKLLSAATFLGAISCL-TAFCLSSL-----YGFLALFTVGELLVFATQAPVNYV 366
                A  L+ A++      CL  A  L+S      Y FLAL   GELL+    A V  +
Sbjct: 339 KVNPRAEPLICASSLFATAPCLYLALILASRTLLASYVFLAL---GELLLSCNWAVVADI 395

Query: 367 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG----VLQ-DHVNNWRKTTLALTSIFF 421
            L  V P  R  + A+     H+ GD  S  L G    VLQ +  +++ +  L+L   F 
Sbjct: 396 LLSVVVPRCRGTAEALQITVAHVLGDAGSPYLTGLISSVLQAERPDSYLQHFLSLQHSFL 455

Query: 422 -------LAAGIWFVGIFLKSIDKFNEDGENQISLDSK 452
                  L  G + +       D+       + +LDSK
Sbjct: 456 CCAFAIVLGGGFFLLTALHLEKDQARARQPGKGTLDSK 493

Sphingolipid transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
255576025	505	transporter, putative [Ricinus communis]	0.924	0.853	0.8	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.937	0.856	0.773	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.937	0.818	0.773	0.0
255554517	541	transporter, putative [Ricinus communis]	0.933	0.804	0.721	0.0
357485271	497	Spinster-like protein [Medicago truncatu	0.922	0.865	0.723	0.0
356531403	496	PREDICTED: protein spinster homolog 1-li	0.922	0.866	0.719	1e-179
356546730	532	PREDICTED: protein spinster homolog 1-li	0.929	0.813	0.699	1e-178
356519493	530	PREDICTED: protein spinster homolog 1-li	0.935	0.822	0.693	1e-178
357164805	606	PREDICTED: protein spinster homolog 1-li	0.927	0.712	0.690	1e-177
218195245	596	hypothetical protein OsI_16710 [Oryza sa	0.929	0.726	0.685	1e-176

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/435 (80%), Positives = 386/435 (88%), Gaps = 4/435 (0%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSF
Sbjct: 64  QGDFNLNNFQDGVLSSAFMVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSSF 123

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSIAICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG 
Sbjct: 124 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGGF 183

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VGS+ NWRYAFWGEA+LMLPFAVL F +KPLQLKGFAPAES KA + +S+   + AS   
Sbjct: 184 VGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASITE 240

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
           D+ +EDIS +A + S K  GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIGA
Sbjct: 241 DNGNEDISSRAFKAS-KLKGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIGA 299

Query: 268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 327
           YSYWGPKAGYNIYHMSNADMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS ATF
Sbjct: 300 YSYWGPKAGYNIYHMSNADMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGATF 359

Query: 328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 387
           LGAI C +AFCL +LYGF+ LF+VGELLVFATQAPVNYVCLH VKP LR LSMAISTVSI
Sbjct: 360 LGAIFCFSAFCLKNLYGFIILFSVGELLVFATQAPVNYVCLHCVKPGLRPLSMAISTVSI 419

Query: 388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQI 447
           HIFGDVPSSPLVGVLQDH+NNWR+T+L LT++ F+AAGIWFVG+FLK +D  NEDGENQI
Sbjct: 420 HIFGDVPSSPLVGVLQDHINNWRETSLILTAVLFIAAGIWFVGVFLKGVDMSNEDGENQI 479

Query: 448 SLDSKANMKPLLEGN 462
           S + K +M+PLLE N
Sbjct: 480 SANVKGSMEPLLEEN 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/442 (77%), Positives = 382/442 (86%), Gaps = 5/442 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSF
Sbjct: 64  QGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSF 123

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSIAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG 
Sbjct: 124 DFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGF 183

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VG H NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N
Sbjct: 184 VGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVN 242

Query: 208 DHV---SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 264
             V   +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFV
Sbjct: 243 GGVLIRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFV 302

Query: 265 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA 324
           IGAYSYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS 
Sbjct: 303 IGAYSYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSG 362

Query: 325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST 384
           ATFLGAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+ST
Sbjct: 363 ATFLGAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMST 422

Query: 385 VSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGE 444
           V+IHIFGDVPSSPLVG+LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D E
Sbjct: 423 VAIHIFGDVPSSPLVGILQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSE 482

Query: 445 NQISLDSKANMKPLLEGNGDNL 466
           NQ S+ SKA MKPLLEG  D +
Sbjct: 483 NQ-SVQSKATMKPLLEGEDDEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/442 (77%), Positives = 382/442 (86%), Gaps = 5/442 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSF
Sbjct: 88  QGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSF 147

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSIAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG 
Sbjct: 148 DFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGF 207

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VG H NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N
Sbjct: 208 VGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVN 266

Query: 208 DHV---SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV 264
             V   +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFV
Sbjct: 267 GGVLIRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFV 326

Query: 265 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA 324
           IGAYSYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS 
Sbjct: 327 IGAYSYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSG 386

Query: 325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST 384
           ATFLGAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+ST
Sbjct: 387 ATFLGAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMST 446

Query: 385 VSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGE 444
           V+IHIFGDVPSSPLVG+LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D E
Sbjct: 447 VAIHIFGDVPSSPLVGILQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSE 506

Query: 445 NQISLDSKANMKPLLEGNGDNL 466
           NQ S+ SKA MKPLLEG  D +
Sbjct: 507 NQ-SVQSKATMKPLLEGEDDEM 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/442 (72%), Positives = 365/442 (82%), Gaps = 7/442 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLSVWT A  GCG S 
Sbjct: 89  QGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSFNPFRLIGVGLSVWTLAVVGCGFSI 148

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           +FWSI ICRM VGVGEASFISLAAPFIDDNAPV QKTAWL++FYMCIP+G A GYVYGG+
Sbjct: 149 NFWSITICRMFVGVGEASFISLAAPFIDDNAPVAQKTAWLAIFYMCIPSGYAFGYVYGGL 208

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA--QVVASVSE-----G 200
           VG H NWR+AFWGEAILMLPF VL F++KPLQLKGFAPAES KA   V  +VSE      
Sbjct: 209 VGDHANWRWAFWGEAILMLPFVVLGFLMKPLQLKGFAPAESKKALTSVETAVSEVQDTET 268

Query: 201 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 260
           S     N  V E+++D++ + S  S   +  LNQ S+F +D K LL EKVYVVNVLGYIA
Sbjct: 269 SAGKGENLSVKEELNDKSPKPSCMSRYATFSLNQFSRFIKDMKALLVEKVYVVNVLGYIA 328

Query: 261 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK 320
           YNFVIGAYSYWGPKAGYNIY+M+NADM+FGG+TIVCGI+GT++GG+ILD M +TI NAFK
Sbjct: 329 YNFVIGAYSYWGPKAGYNIYNMTNADMIFGGITIVCGILGTMAGGYILDYMTSTIPNAFK 388

Query: 321 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM 380
           LLS ATFLGAI C +AFC  S+Y FLALF +GELLVFATQ PVNY+CLH VKPS+R LSM
Sbjct: 389 LLSVATFLGAIFCFSAFCFKSMYVFLALFAIGELLVFATQGPVNYICLHCVKPSMRPLSM 448

Query: 381 AISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 440
           A+S VSIHIFGDVPSSPLVGVLQD +NNWR T L LT+I F AA IWF+GIFLKS+DKFN
Sbjct: 449 AMSIVSIHIFGDVPSSPLVGVLQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKFN 508

Query: 441 EDGENQISLDSKANMKPLLEGN 462
           E+ E+Q+++  ++N  PLLEG 
Sbjct: 509 EESEHQVAVTDRSNTTPLLEGK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/438 (72%), Positives = 362/438 (82%), Gaps = 8/438 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF L+NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSF
Sbjct: 62  QGDFNLSNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSF 121

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSIAICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+
Sbjct: 122 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGL 181

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VGS  NWR AFWGEAI MLPF +L F+IKPLQLKGF P ES + +   + +E + + N +
Sbjct: 182 VGSQFNWRVAFWGEAIFMLPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGD 238

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
           D +  +  DQA  R  K    S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGA
Sbjct: 239 DGILAE--DQAFIRGSKL--TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGA 294

Query: 268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 327
           YSYWGPKAGY+IYHMSNAD++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATF
Sbjct: 295 YSYWGPKAGYSIYHMSNADLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATF 354

Query: 328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 387
           LGAI CL AF    L+GF+ LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSI
Sbjct: 355 LGAIFCLVAFLFKGLFGFIILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSI 414

Query: 388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQI 447
           HIFGDVPS+PLVGVLQDH+N+WRKT++ LTSIFFLAAG+WF+G FLKS D FN+D E   
Sbjct: 415 HIFGDVPSAPLVGVLQDHINDWRKTSICLTSIFFLAAGVWFIGTFLKSDDLFNKDDEEDE 474

Query: 448 SLDS-KANMKPLLEGNGD 464
           S  + +   KPLLEG  D
Sbjct: 475 STTTLRGVRKPLLEGIND 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/438 (71%), Positives = 360/438 (82%), Gaps = 8/438 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSF
Sbjct: 62  QGDFNLNNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSF 121

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSIAICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+
Sbjct: 122 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGI 181

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VGS  NWR AFW EAILMLPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +
Sbjct: 182 VGSQFNWRVAFWVEAILMLPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-D 239

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
           D ++ED   QA  +  KS   S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGA
Sbjct: 240 DTLAED---QALLKGSKS--TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGA 294

Query: 268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 327
           YSYWGPKAGY+IYHM+NAD++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATF
Sbjct: 295 YSYWGPKAGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATF 354

Query: 328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 387
           LGAI CL AF   SL GF+  F++GELL+F TQAPVNYV L  VKPSLR LSMAISTVSI
Sbjct: 355 LGAIFCLIAFLFKSLSGFIVFFSMGELLIFVTQAPVNYVSLRCVKPSLRPLSMAISTVSI 414

Query: 388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQI 447
           H+FGDVPSSPLVGVLQDH+N+WRKT L LTSIFFLAA IWF+GIFLKS D +++D E Q 
Sbjct: 415 HVFGDVPSSPLVGVLQDHINDWRKTALCLTSIFFLAAVIWFIGIFLKS-DVYDKDDEEQS 473

Query: 448 SLDSKANMKPLLEGNGDN 465
           +      + PLL+G+ D 
Sbjct: 474 ATTRGGKLTPLLDGSSDT 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/439 (69%), Positives = 360/439 (82%), Gaps = 6/439 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLSVWT AT  CG SF
Sbjct: 80  QGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSF 139

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           +FWSI+ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL++FYMCIP+G ALGYVYGG+
Sbjct: 140 NFWSISICRMLVGVGEASFISLAAPFIDDNAPVTQKTAWLAIFYMCIPSGYALGYVYGGL 199

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA---QVVASVSEGSEAS 204
           VGSHL WRYAFW E++ M+PFA+    +KPLQL+GF PA+S K    + VAS  +  EAS
Sbjct: 200 VGSHLGWRYAFWVESLFMVPFAISGLFMKPLQLRGFVPADSKKTLTPETVASGVQVMEAS 259

Query: 205 NLNDH---VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 261
           N  D    +  ++ D++S    KS   ++   + S+F  D K LL +KVYVVNVLGYIAY
Sbjct: 260 NGKDEPLSLKAELRDKSSNDHSKSKSVTQIFEKFSRFLNDMKELLLDKVYVVNVLGYIAY 319

Query: 262 NFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL 321
           NFVIGAYSYWGPKAGYNIYHM++AD++FGG+TIVCGIVGT++GGF+LD M  T+SNAFKL
Sbjct: 320 NFVIGAYSYWGPKAGYNIYHMTDADLIFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKL 379

Query: 322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA 381
           LS  TF+GA  C  AF   S+YGFLALF++GELLVFATQ PVNYVCL  VKPSLR LSMA
Sbjct: 380 LSITTFIGAAFCFGAFLFRSMYGFLALFSIGELLVFATQGPVNYVCLRCVKPSLRPLSMA 439

Query: 382 ISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNE 441
           +STV IHIFGDVPSSPLVGVLQD++NNWR T L LTSI FLAAGIWF+GIFL ++D+F+E
Sbjct: 440 MSTVVIHIFGDVPSSPLVGVLQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRFDE 499

Query: 442 DGENQISLDSKANMKPLLE 460
           D E+Q+S   ++N  PLL+
Sbjct: 500 DSEHQVSNVERSNTMPLLQ 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/450 (69%), Positives = 364/450 (80%), Gaps = 14/450 (3%)

Query: 25  GSCR------GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 78
           G+C+      GDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLSVWT 
Sbjct: 70  GTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTL 129

Query: 79  ATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 138
           AT  CG SF+FWSIA+CRMLVGVGEASFISLAAPFIDDNAPV QKTAWL++FYMCIP G 
Sbjct: 130 ATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAPVSQKTAWLAIFYMCIPAGY 189

Query: 139 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV- 197
           A+GY+YGG+VG+H  WRY FW EAILM PFA+L FV+KPLQLKGFAP +S KA  + +V 
Sbjct: 190 AIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQLKGFAPTDSEKALTLGTVA 249

Query: 198 SEGSE--ASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 252
           SE S+  ASN  D    +  +  D++S    +S  +   L+Q S+F +D K LL +KV+V
Sbjct: 250 SEVSDVGASNGKDEALSLKAEFRDKSSHEPSRS--KCTILDQFSRFLKDMKELLLDKVFV 307

Query: 253 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMG 312
           VNVLGYIAYNFVIGAYSYWGPKAGY+IY+M+NADMMFGG+T+VCGI+GT++GGF+LD M 
Sbjct: 308 VNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILGTVAGGFVLDFMT 367

Query: 313 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK 372
            TISNAFKLLS ATF+G   C  AF   S YGFLALF VGELLVFATQ PVNYVCLH VK
Sbjct: 368 NTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELLVFATQGPVNYVCLHCVK 427

Query: 373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIF 432
           PSLR LSMA+STV+IHIFGDVPSSPLVG++QD +NNWR T L LT+IFF AA IWF+GIF
Sbjct: 428 PSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALILTTIFFPAAAIWFIGIF 487

Query: 433 LKSIDKFNEDGENQISLDSKANMKPLLEGN 462
           L S+D+FNED E+++S   + +  PLLE N
Sbjct: 488 LPSVDRFNEDSEHEVSSVERTSTAPLLEEN 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164805|ref|XP_003580172.1| PREDICTED: protein spinster homolog 1-like [Brachypodium distachyon]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/440 (69%), Positives = 360/440 (81%), Gaps = 8/440 (1%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNF+DGVLSSAFMVGLLVASPIFASLAK HNPFRLIGVGL VWT ATAGCG SF
Sbjct: 159 QGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSF 218

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSI ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG+
Sbjct: 219 DFWSITICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLAMFYMCIPTGIALGYVYGGL 278

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
           VG  L+WR AFWGE+ILMLPF +L FVIKPL+LKGF   +  K        E  + +N N
Sbjct: 279 VGKRLHWRAAFWGESILMLPFVILGFVIKPLELKGFTHNKKTKEYGPMLNPELRDETNNN 338

Query: 208 ------DHVSEDISDQASER-SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 260
                    +E ++++  +R S  S G+ + + ++  F QD K LLQEKVYV+NVLGYIA
Sbjct: 339 GIKQGVPAGTEGLTEKIPQRFSFSSFGK-KVMIEIGHFGQDMKELLQEKVYVINVLGYIA 397

Query: 261 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK 320
           YNFVIGAYSYWGPKAG +IY M++AD+MFGG+TIVCGI GT++GGFILD++ +TISNAFK
Sbjct: 398 YNFVIGAYSYWGPKAGQDIYKMASADLMFGGITIVCGIFGTLAGGFILDKIESTISNAFK 457

Query: 321 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM 380
           LLS ATFLGAI C +AFC  SLYGF+  F+VGELLVFATQAPVNY+CLH VKPSLR LSM
Sbjct: 458 LLSGATFLGAIFCFSAFCFKSLYGFIPFFSVGELLVFATQAPVNYICLHCVKPSLRPLSM 517

Query: 381 AISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 440
           A+STVSIHIFGDVPSSPLVG+LQD+++NWR T L LTSI F+A   WF+GIF++S+D+FN
Sbjct: 518 AMSTVSIHIFGDVPSSPLVGLLQDNIHNWRATALTLTSILFIAVIFWFIGIFVRSVDRFN 577

Query: 441 EDGENQISLDSKANMKPLLE 460
           E  E+ +    ++N++PLL+
Sbjct: 578 EQSEHGLPAAERSNLRPLLD 597

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195245|gb|EEC77672.1| hypothetical protein OsI_16710 [Oryza sativa Indica Group]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/442 (68%), Positives = 362/442 (81%), Gaps = 9/442 (2%)

Query: 28  RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
           +GDF LNNF+DGVLSSAFMVGLL+ASPIFASLAK HNPFRLIGVGL VWT ATAGCG SF
Sbjct: 155 QGDFNLNNFEDGVLSSAFMVGLLIASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSF 214

Query: 88  DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 147
           DFWSI ICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+MFYMCIPTG+A+GYVYGG+
Sbjct: 215 DFWSITICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLAMFYMCIPTGIAVGYVYGGL 274

Query: 148 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF----APAESGKAQVVASVSEGSEA 203
           VG+ L+WR AFWGE+ILMLPF +L FVIKPL+LKGF       E G+        E  + 
Sbjct: 275 VGNSLHWRAAFWGESILMLPFVILGFVIKPLELKGFNHSVKTKEYGEMLNPERQDETKQG 334

Query: 204 SNLN-DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 262
           +++  D ++E +  + S   I S G+ + L ++  F +D K LLQEKVYV+NVLGYI+YN
Sbjct: 335 ASIGVDGLAETLPHKFS---ISSFGK-KVLTEIKHFMKDMKELLQEKVYVINVLGYISYN 390

Query: 263 FVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL 322
           FVIGAYSYWGPKAG +IY+M++AD+MFGG+TIVCGI GT+SGGFILD++ +TISNAFKLL
Sbjct: 391 FVIGAYSYWGPKAGQDIYNMASADIMFGGITIVCGIFGTLSGGFILDKIDSTISNAFKLL 450

Query: 323 SAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI 382
           S ATFLGAI C  AFC  SLYGF+  F+VGELLVFATQAPVNYVCLH VKPSLR LSMA+
Sbjct: 451 SGATFLGAIFCFGAFCFKSLYGFIPFFSVGELLVFATQAPVNYVCLHCVKPSLRPLSMAM 510

Query: 383 STVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNED 442
           STV+IHIFGDVPSSPLVG+LQD ++NWR T L LTSI F+AA  WF+GIF++S+D+FNE 
Sbjct: 511 STVAIHIFGDVPSSPLVGLLQDKIHNWRSTALTLTSILFIAAIFWFIGIFVRSVDRFNEQ 570

Query: 443 GENQISLDSKANMKPLLEGNGD 464
            E+ +    ++N++PLL+ N +
Sbjct: 571 SEHDVPAVERSNLRPLLDENEE 592

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.478	0.460	0.641	2.1e-139
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.886	0.839	0.548	4.7e-119
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.793	0.725	0.614	3.3e-118
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.330	0.254	0.308	3.1e-18
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.306	0.286	0.284	7.8e-17
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.221	0.195	0.339	1.1e-16
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.221	0.179	0.339	1.7e-16
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.221	0.195	0.339	5.1e-16
UNIPROTKB|Q08DX7	528	SPNS1 "Protein spinster homolo	0.221	0.195	0.339	8.3e-16
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.221	0.183	0.339	8.6e-16

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 2.1e-139, Sum P(2) = 2.1e-139
 Identities = 145/226 (64%), Positives = 171/226 (75%)

Query:   236 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXX 295
             S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NADM+F      
Sbjct:   259 SAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENADMIFGGVTVV 318

Query:   296 XXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 355
                        ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y FLALF VGELL
Sbjct:   319 CGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAFLALFAVGELL 378

Query:   356 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 415
             VFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+VNNWR T+L 
Sbjct:   379 VFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLV 438

Query:   416 LTSIFFLAAGIWFVGIFLKSIDKFNEDGE-NQISLDSKANMKPLLE 460
             LT + F AA IW +GIFL S+D++NED E + ++ +S A   PLL+
Sbjct:   439 LTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTRESTA--APLLQ 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 236/430 (54%), Positives = 295/430 (68%)

Query:    28 RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 87
             +G+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S+
Sbjct:    72 QGEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSY 131

Query:    88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXX 147
             +FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP            
Sbjct:   132 NFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGY 191

Query:   148 XXSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNL 206
               +HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K              ++
Sbjct:   192 IGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPST-----------SI 240

Query:   207 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 266
                   D   +AS+   K+  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIG
Sbjct:   241 ETVAPTDA--EASQIKTKT-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIG 295

Query:   267 AYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAAT 326
             AYSYWGPKAG+ IY M NADM+F                ++LD++ AT+SN FKLL+A+T
Sbjct:   296 AYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAAST 355

Query:   327 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 386
              LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV 
Sbjct:   356 LLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVL 415

Query:   387 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQ 446
             IHI GDVPSSPL G +QDH+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ NE  E+ 
Sbjct:   416 IHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSNEVSEDD 475

Query:   447 ISLDSKANMK 456
                + K   K
Sbjct:   476 EVEEDKLESK 485

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 236/384 (61%), Positives = 273/384 (71%)

Query:    67 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 126
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:   127 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 186
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   187 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 246
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   247 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 306
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   307 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 366
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   367 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 426
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query:   427 WFVG-IFLKSIDKFNEDGENQISL 449
             WF+G I L S    +E    QI L
Sbjct:   475 WFIGKINLNSFYSNDESFLVQIKL 498

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 50/162 (30%), Positives = 79/162 (48%)

Query:    19 VAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 78
             +AG +    R DF + N   G+L + F++  +V +PIF  L   ++   ++ VG+ +W+ 
Sbjct:   134 IAGVLT-DVRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWST 192

Query:    79 ATAGCGSSF-DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT 136
              T   GS    F W IA  R LVG+GEAS+ ++A   I D      ++  L++FY  IP 
Sbjct:   193 TTL-LGSFMKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV 250

Query:   137 XXXXXXXXXXXXXSHL--NWRYAFWGEAILMLPFAVLAFVIK 176
                          +HL  +WR+A     IL +    L  +IK
Sbjct:   251 GSGLGYIVGSKT-AHLANDWRWALRVTPILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 7.8e-17, Sum P(3) = 7.8e-17
 Identities = 43/151 (28%), Positives = 70/151 (46%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F +++   G+L + F+   +  +P+F  L   ++   ++ VGL +W   T G  SSF   
Sbjct:    79 FFISDSTSGLLQTVFICSFMFLAPVFGYLGDRYDRKLIMIVGLVMWIVTTLG--SSFVRK 136

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXX 146
               FW +   R LVG GEAS+ ++A   I D     ++T  +S FY+ IP           
Sbjct:   137 SHFWVLVATRALVGTGEASYSTIAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGA 196

Query:   147 XXXSHL-NWRYAFW-GEAILMLPFAVLAFVI 175
                    +WR+A     A+  L   +L F+I
Sbjct:   197 TVADATGDWRWALRVSPALGGLGLLLLVFLI 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F + +   G++ + F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF   
Sbjct:    90 FNIGDSSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPG 147

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 135
               FW + + R LVGVGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   148 EHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F + +   G++ + F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF   
Sbjct:   135 FNIGDSSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPG 192

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 135
               FW + + R LVGVGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   193 EHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 5.1e-16, Sum P(3) = 5.1e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F + +   G++ + F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF   
Sbjct:    90 FNIGDGSTGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPR 147

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 135
               FW + + R LVGVGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   148 EHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q08DX7 SPNS1 "Protein spinster homolog 1" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F + +   G++ + F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF   
Sbjct:    90 FDIGDGSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPR 147

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 135
               FW + + R LVGVGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   148 ERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query:    31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--- 87
             F + +   G++ + F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF   
Sbjct:   123 FDIGDSSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPR 180

Query:    88 -DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 135
               FW + + R LVGVGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   181 ERFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.6836	0.8626	0.8305	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-16
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-15
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-11
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-11
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	8e-08
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	5e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	7e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	0.002
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.004

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 40/149 (26%), Positives = 69/149 (46%)

Query: 30  DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF 89
           D  L+  Q G++ SAF +G  + S +   L+      R++ +GL ++   +     +   
Sbjct: 28  DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL 87

Query: 90  WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 149
           W + + R L+G+G  +    AA  I +  P  ++   L +F      G  LG + GG++ 
Sbjct: 88  WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147

Query: 150 SHLNWRYAFWGEAILMLPFAVLAFVIKPL 178
             L WR+ F   AIL L  A+L   +  L
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 68/373 (18%), Positives = 126/373 (33%), Gaps = 47/373 (12%)

Query: 18  LVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT 77
           L+   +      D  ++  + G+L +AF +G  +A P+   L+      R++ +GL ++ 
Sbjct: 14  LLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA 73

Query: 78  FATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 137
                   +   W + + R+L G+G  +    AA  I D  P  ++   L +       G
Sbjct: 74  LGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLG 133

Query: 138 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV 197
            ALG + GG++ S   WR AF   AIL L  AVLA ++ P                    
Sbjct: 134 AALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLP-------------------- 173

Query: 198 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG 257
                        S+         +         L                   +  +L 
Sbjct: 174 --------RPPPESKRPKPAEEAPAPLVPAWKLLLRD---------------PVLWLLLA 210

Query: 258 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS 316
            + + F   A   + P     +  +S     +  G+  + G +G +  G + D++G    
Sbjct: 211 LLLFGFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRR 269

Query: 317 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR 376
               LL        +  L +   SSL+  +AL  +G          +N +         R
Sbjct: 270 LLLALLLLILAALGL-ALLSLTESSLWLLVALLLLG-FGAGLVFPALNALVSDLAPKEER 327

Query: 377 ALSMAISTVSIHI 389
             +  +   +  +
Sbjct: 328 GTASGLYNTAGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 39  GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 98
           G+L + + +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 99  VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 158
            G G A  +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 159 WGEAILML-PFAVLAFVIKP 177
              AIL L  F +LAF++  
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 71/370 (19%), Positives = 135/370 (36%), Gaps = 40/370 (10%)

Query: 9   LAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL 68
           + ++  Y L   GF   +   ++ L+  Q G L SA ++G+   +  F  LA      R+
Sbjct: 25  IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRV 84

Query: 69  IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS 128
           +   + +++  T  C  + +   + I R L G+G    +      + + AP   +   + 
Sbjct: 85  LLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVG 144

Query: 129 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFW-GEAILMLPFAVLAFV----IKPLQLKGF 183
           + +   P G A+G    G +     WR  F+ G    +L   +L       I  L  K  
Sbjct: 145 LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR- 203

Query: 184 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK 243
                   + + +       +     + E  + Q ++RS+                   K
Sbjct: 204 ----PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF------------------K 241

Query: 244 VLLQE---KVYVVNVLGYIAYNFVIGAYSYWGPK----AGYNIYHMSNADMMFGGVTIVC 296
            L Q    ++ V+  L Y      +   + W PK     G++     +     G +    
Sbjct: 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFNFG 297

Query: 297 GIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA-LFTVGELL 355
           G++G+I  G++ D++G  ++    LL A   +   S L +  L  L G +A  F  G   
Sbjct: 298 GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQS 357

Query: 356 VFATQAPVNY 365
                  + Y
Sbjct: 358 GLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 97  MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 147
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 148 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 194
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 195 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 254
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 312
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 313 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 352
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 70/402 (17%)

Query: 39  GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 98
           G L +A+ +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 99  VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 158
            G+    F S+AA       P  ++   L++ +  +     LG   G  +G    WR  F
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170

Query: 159 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 218
              A+L    A+LA +   L  K   P+E   +                           
Sbjct: 171 LAIAVL----ALLALL---LLWKLLPPSEISGS--------------------------- 196

Query: 219 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 278
                           L    +   VLL     +   L    +      Y+Y  P    +
Sbjct: 197 --------LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-S 240

Query: 279 IYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 333
           +   S +      + FG    + G +G + GG + D+         + L AA  L A++ 
Sbjct: 241 VAGFSVSAVSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA- 289

Query: 334 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGD 392
           L A   +     LAL  +       + A        + + P    L+ +++  + ++ G 
Sbjct: 290 LLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL-GI 348

Query: 393 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK 434
              + L G++ D +      T  + +   L A +  +    K
Sbjct: 349 ALGAALGGLVLDALGYA--ATGWVGAALLLLALLLALLSARK 388

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 1/147 (0%)

Query: 31  FKLNNFQDGVLSSAFMVGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGSSFDF 89
             L+  + G+L S F +G ++ + +   L+ +      L+ +GL +          +   
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265

Query: 90  WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 149
             + +  +L+G G             + AP   +     +F      G ALG +  G++ 
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325

Query: 150 SHLNWRYAFWGEAILMLPFAVLAFVIK 176
               +   F   A L L  A+L  ++ 
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 44/318 (13%)

Query: 30  DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF 89
           D  L+  Q G + SAF  G +V       L       + + V + +W   T     +  +
Sbjct: 23  DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82

Query: 90  WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG 149
            S+ I R+L+G  EA F       +    P  ++   +S+F      G  +G    G + 
Sbjct: 83  VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142

Query: 150 SHLNWRYAFWGEAIL--MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 207
            H +W++AF  E +L  +     L F+  P Q   +   E     V   ++E        
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGP-- 200

Query: 208 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 267
                         + K               Q  ++L   +V+ +  LG    N  +G 
Sbjct: 201 -------------STPKK-------------YQIKELLKDRRVWGL-ALGQFLVNIGLGF 233

Query: 268 YSYWGP-----KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL 322
           +  W P     + G +I            +  + G +G I GG + D     +    K L
Sbjct: 234 FLTWFPTYLVQERGLSILEAG----FMASLPGIVGFIGMILGGRLSD----LLLRRGKSL 285

Query: 323 SAATFLGAISCLTAFCLS 340
             A     I+ L    L 
Sbjct: 286 VFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 30/135 (22%), Positives = 63/135 (46%)

Query: 43  SAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 102
           +++M+   ++ P+   LAK     RL  +    +T  +  CG + +   + I R++ G G
Sbjct: 44  TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFG 103

Query: 103 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 162
               I L+   + +  P  ++   ++++ + +    ALG   GG +  + +WR+ F    
Sbjct: 104 GGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163

Query: 163 ILMLPFAVLAFVIKP 177
            + +   V+AF I P
Sbjct: 164 PIGIIVVVVAFFILP 178

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 313
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 314 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 373
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 374 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 429
             R  +  +      + G     PL+  L      +    L L ++  LAA +  +
Sbjct: 297 EARGTASGLFNTFGSLGG--ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 338 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 397
           C +SL  FL LF     + F T  P+  V L  V P  R+L++ +  + + +FG +P+  
Sbjct: 514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPI 573

Query: 398 LVGVLQDH 405
           L G+L D 
Sbjct: 574 LFGLLIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 83  CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 142
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 143 VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 178
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
PRK12382	392	putative transporter; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
TIGR00805	633	oat sodium-independent organic anion transporter.	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK10054	395	putative transporter; Provisional	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
KOG0254	513	consensus Predicted transporter (major facilitator	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.97
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.96
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.95
PTZ00207	591	hypothetical protein; Provisional	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
KOG3626	735	consensus Organic anion transporter [Secondary met	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
PRK09669	444	putative symporter YagG; Provisional	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.91
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.91
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.91
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.91
PRK10429	473	melibiose:sodium symporter; Provisional	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.91
PF13347	428	MFS_2: MFS/sugar transport protein	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
PRK09848	448	glucuronide transporter; Provisional	99.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.89
PRK11462	460	putative transporter; Provisional	99.87
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.87
KOG2563	480	consensus Permease of the major facilitator superf	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.8
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.63
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
PRK09528	420	lacY galactoside permease; Reviewed	99.55
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PRK15011	393	sugar efflux transporter B; Provisional	99.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.52
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
PRK03893	496	putative sialic acid transporter; Provisional	99.5
PRK12382	392	putative transporter; Provisional	99.5
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.43
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.43
PRK03633	381	putative MFS family transporter protein; Provision	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
PRK10054	395	putative transporter; Provisional	99.4
PRK03699	394	putative transporter; Provisional	99.4
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
PRK11663	434	regulatory protein UhpC; Provisional	99.38
KOG3762	618	consensus Predicted transporter [General function	99.37
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.36
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.35
TIGR00893	399	2A0114 d-galactonate transporter.	99.34
TIGR00900	365	2A0121 H+ Antiporter protein.	99.33
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.33
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.32
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.3
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.27
PRK09952	438	shikimate transporter; Provisional	99.26
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.25
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.25
PRK10504	471	putative transporter; Provisional	99.25
PRK15075	434	citrate-proton symporter; Provisional	99.24
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.24
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.24
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.24
PLN00028	476	nitrate transmembrane transporter; Provisional	99.23
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
PRK12307	426	putative sialic acid transporter; Provisional	99.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.22
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.22
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.2
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.2
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.19
TIGR00895	398	2A0115 benzoate transport.	99.19
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.18
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.17
TIGR00898	505	2A0119 cation transport protein.	99.16
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.15
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.14
PRK11043	401	putative transporter; Provisional	99.14
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.12
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.1
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.1
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.08
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.08
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.08
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.08
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.07
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.07
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.06
KOG2615	451	consensus Permease of the major facilitator superf	99.05
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.05
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.03
COG0477	338	ProP Permeases of the major facilitator superfamil	99.03
KOG0637	498	consensus Sucrose transporter and related proteins	99.02
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.01
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.0
TIGR00901	356	2A0125 AmpG-related permease.	99.0
KOG3762	618	consensus Predicted transporter [General function	98.99
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.98
PRK10133	438	L-fucose transporter; Provisional	98.95
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.95
KOG0569	485	consensus Permease of the major facilitator superf	98.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.92
KOG3810	433	consensus Micronutrient transporters (folate trans	98.91
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.91
PRK09848	448	glucuronide transporter; Provisional	98.9
PRK10429	473	melibiose:sodium symporter; Provisional	98.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.84
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.83
PF13347	428	MFS_2: MFS/sugar transport protein	98.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.81
TIGR00805	633	oat sodium-independent organic anion transporter.	98.79
PTZ00207	591	hypothetical protein; Provisional	98.79
PRK09669	444	putative symporter YagG; Provisional	98.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.76
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.75
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.72
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.66
KOG2532	466	consensus Permease of the major facilitator superf	98.64
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.62
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.53
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.51
PRK11462	460	putative transporter; Provisional	98.49
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.48
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.46
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.46
COG2211	467	MelB Na+/melibiose symporter and related transport	98.45
KOG2533	495	consensus Permease of the major facilitator superf	98.35
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.34
COG3202	509	ATP/ADP translocase [Energy production and convers	98.33
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.32
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.26
KOG0254	513	consensus Predicted transporter (major facilitator	98.25
PF12832	77	MFS_1_like: MFS_1 like family	98.18
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.15
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.09
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.95
KOG3880	409	consensus Predicted small molecule transporter inv	97.82
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.7
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.64
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.59
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.38
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.21
PF12832	77	MFS_1_like: MFS_1 like family	97.12
KOG2563	480	consensus Permease of the major facilitator superf	97.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.12
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.87
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.82
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.72
PRK03612	521	spermidine synthase; Provisional	96.62
KOG0637	498	consensus Sucrose transporter and related proteins	96.52
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.36
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.22
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.14
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.79
KOG3626	735	consensus Organic anion transporter [Secondary met	95.5
COG0477	338	ProP Permeases of the major facilitator superfamil	95.39
PRK03612	521	spermidine synthase; Provisional	94.34
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.01
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.49
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.11
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.99
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.83
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	86.98
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.73
KOG3810	433	consensus Micronutrient transporters (folate trans	84.65
KOG3880	409	consensus Predicted small molecule transporter inv	83.65

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-41  Score=302.82  Aligned_cols=368  Identities=18%  Similarity=0.206  Sum_probs=304.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      +.+++..|..+.+..+...++|++.+|+|+|..+.|++.|.|.++..+++|+...+.||+.||++++..+.++.++++++
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~   95 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS   95 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                      ++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||..|+..+.
T Consensus        96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~  175 (394)
T COG2814          96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV  175 (394)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHH
Q 012286          164 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  243 (466)
Q Consensus       164 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (466)
                      ++++..+..+..+|  +++.  +++.+..                                              .++..
T Consensus       176 l~ll~~~~~~~~lP--~~~~--~~~~~~~----------------------------------------------~~~~~  205 (394)
T COG2814         176 LALLALLLLWKLLP--PSEI--SGSLPGP----------------------------------------------LRTLL  205 (394)
T ss_pred             HHHHHHHHHHHhCC--CccC--CCCCCcc----------------------------------------------hhHHH
Confidence            99999999998888  1111  1111000                                              11244


Q ss_pred             hhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHH
Q 012286          244 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL  322 (466)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  322 (466)
                      +++|+|.++...+..++...+.+...+|...++++..|++.... .....++++.++|+.++|++.|| +.|     +.+
T Consensus       206 ~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l  279 (394)
T COG2814         206 RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RAL  279 (394)
T ss_pred             HHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHH
Confidence            78899999999999999999999999999999999999987665 55567889999999999999999 555     455


Q ss_pred             HHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          323 SAATFLGAI-SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      .....+.+. ...+....++.+...+...+.++..............+ .-|+.++.+.+++....|+ |..+|..++|.
T Consensus       280 ~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl-gia~GA~lGG~  357 (394)
T COG2814         280 IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL-GIALGAALGGL  357 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            554344343 34444444455555555555555544443333344444 4468899999999999998 99999999999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 012286          402 LQDHVNNWRKTTLALTSIFFLAAGIWFVG  430 (466)
Q Consensus       402 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
                      +.|+.| +....++.+...+++..+....
T Consensus       358 v~~~~g-~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         358 VLDALG-YAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHhhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999966 7777777777666666555543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8e-42  Score=300.00  Aligned_cols=388  Identities=16%  Similarity=0.146  Sum_probs=306.5

Q ss_pred             HHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHH
Q 012286           12 IKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS   91 (466)
Q Consensus        12 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~   91 (466)
                      ...+..-.++...|.+.+|.++|.+|.|++.+++.+.|.++-.+.|.++||.+.|+.+..++++.++.+++++++++.+.
T Consensus        40 ~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~  119 (448)
T COG2271          40 AFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFL  119 (448)
T ss_pred             HHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHH
Confidence            33445566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhh--hhccCCcchhHHHHHhHHHHHHHH
Q 012286           92 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        92 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      +.+.-+++|..+|..+|.+...+..|+|++|||+..++++.+-++|..+.|++.  +++..+.+||..|++.++++++..
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  889888899999999999999999


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchh
Q 012286          170 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  249 (466)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (466)
                      +..++..+++|+...-++-++...+              +.+.+ ++   +++.+.         ......-.+.+++||
T Consensus       200 l~~~~~~rd~Pqs~GLP~ie~~~~d--------------~~e~~-~~---~~~~~~---------ls~~~i~~~YVL~Nk  252 (448)
T COG2271         200 LILLFLLRDRPQSEGLPPIEEYRGD--------------PLEIY-EE---EKENEG---------LTAWQIFVKYVLKNK  252 (448)
T ss_pred             HHHHHHhCCCccccCCCCHHHhhcC--------------chhhh-hh---hccCCC---------ccHHHHHHHHHHcCh
Confidence            9998888766554433322221100              00000 00   000000         000012356789999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHH
Q 012286          250 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  328 (466)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  328 (466)
                      .+|.++++..+.+.+-+++..|.|.|+.+..|++.... ...+++-+++++|.+++||++||+-+.++.  ...+++.+.
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--p~~~i~~~~  330 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--PMALIFMLL  330 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc--hHHHHHHHH
Confidence            99999999999999999999999999999999996655 445788899999999999999997533211  333444444


Q ss_pred             HHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          329 GAISCLTAFCLSS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       329 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      ..+........++  .+...+++++.|++...-.-..-....|..|++..|++.|+...+.+++|.+.+....|++.|.+
T Consensus       331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            4444444444443  35666666666666665544445566788888999999999999999889999999999999987


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Q 012286          407 NNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       407 g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      | |...|.+..+..+++.++++.
T Consensus       411 g-W~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         411 G-WDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             C-CcchHHHHHHHHHHHHHHHHH
Confidence            6 887888777766666655543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.3e-40  Score=310.71  Aligned_cols=389  Identities=16%  Similarity=0.184  Sum_probs=276.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+.+..+++.+|...+++..|.+++|+|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.+++++++++++
T Consensus        12 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~   91 (412)
T TIGR02332        12 FLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM   91 (412)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            34455667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC------CcchhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAF  158 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f  158 (466)
                      +++|++.+++.|+++|++.+...|....++.|++|+++|++++++++.+..+|.++++.+++++.+      ..|||+.|
T Consensus        92 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f  171 (412)
T TIGR02332        92 FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLF  171 (412)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988763      46999999


Q ss_pred             HHhHHHHHHHHHHHHhhccccccCCCC-CccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhh
Q 012286          159 WGEAILMLPFAVLAFVIKPLQLKGFAP-AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ  237 (466)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (466)
                      ++.++++++..++.++++||++++.+. +++++....    +..+..+.+      .++..+ ..+++.         ..
T Consensus       172 ~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~----~~~~~~~~~------~~~~~~-~~~~~~---------~~  231 (412)
T TIGR02332       172 LLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALK----EMIDNDQLT------LEQPEG-AFAHAA---------MP  231 (412)
T ss_pred             HHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHH----HHHHhcccc------cccccc-cccccc---------cc
Confidence            999988887777777777776533110 000000000    000000000      000000 000000         00


Q ss_pred             hhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh-ccccchhh-HHHhhhhhhccccchhhhhhHhhhcccc
Q 012286          238 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  315 (466)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~  315 (466)
                      ....+++++ +|.+|...+..++.....+.+.+|+|.++++. .+.++... .......++.+++.++.|+++||+++|+
T Consensus       232 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       232 QRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence            011234444 47788877777888888888899999999873 35554333 4557778889999999999999998773


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCc
Q 012286          316 SNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  395 (466)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~  395 (466)
                          ...............+....++.........+..++.....+.......+..|+++|+++.|+.+...+. |.+++
T Consensus       311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~-g~~~~  385 (412)
T TIGR02332       311 ----HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI-GSALS  385 (412)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh-hhhhh
Confidence                2222222222222222222222222222222222222222222223334567889999999999988887 99999


Q ss_pred             cchhHHhhhcchhhHHHHHHHHHH
Q 012286          396 SPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       396 ~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      |.+.|.+.|..|+|...+.+..+.
T Consensus       386 p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       386 PFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhcccccccCCCCchhHHHHHHH
Confidence            999999999988888877765543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3.3e-39  Score=303.73  Aligned_cols=362  Identities=16%  Similarity=0.099  Sum_probs=276.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      +.+..++...+.....+.+|.+++|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++
T Consensus        14 l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   93 (390)
T PRK03545         14 LALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL   93 (390)
T ss_pred             HHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      ++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.++.|||+.|++.++++
T Consensus        94 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~  173 (390)
T PRK03545         94 AWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA  173 (390)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999899999999999888


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+..+...|+.+++     +++ .                                              .++.++.
T Consensus       174 ~l~~~~~~~~~~~~~~~-----~~~-~----------------------------------------------~~~~~~~  201 (390)
T PRK03545        174 LITLLLLIKLLPLLPSE-----HSG-S----------------------------------------------LKSLPLL  201 (390)
T ss_pred             HHHHHHHHHhCCCCCCC-----Ccc-h----------------------------------------------HHHHHHH
Confidence            77766665555542110     000 0                                              0134567


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +++|.++......++..........+.|.++++..|.++... .......++++++.++.+++.||+++|     .....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~  276 (390)
T PRK03545        202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIA  276 (390)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHH
Confidence            788887766655555555555556778888888778776544 444566788899999999999999876     54444


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ...............++.+.......+.+++.....+.......+. .|+.|+++.|+.+...+. |..+||.+.|.+.|
T Consensus       277 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-g~~~G~~~~G~~~~  354 (390)
T PRK03545        277 IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKL-APDATDVAMALFSGIFNI-GIGAGALLGNQVSL  354 (390)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHh-CCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence            4443333333333344445555555555555544334344455554 457889999999877777 88899999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      +.| ++..+...+.+.+++.+..
T Consensus       355 ~~g-~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        355 HLG-LSSIGYVGAALALAALVWS  376 (390)
T ss_pred             ccC-hhHHHHHHHHHHHHHHHHH
Confidence            987 7777777666655555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=9.5e-40  Score=313.97  Aligned_cols=387  Identities=15%  Similarity=0.109  Sum_probs=276.5

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh----
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----   85 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----   85 (466)
                      .++...|...+++..|.+.+|+|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++    
T Consensus        38 ~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~  117 (467)
T PRK09556         38 YLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS  117 (467)
T ss_pred             HHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc
Confidence            3344557777889999999999999999999999999999999999999999999999999988888887776665    


Q ss_pred             -hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc---chhHHHHHh
Q 012286           86 -SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGE  161 (466)
Q Consensus        86 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~  161 (466)
                       ++|++.+++.|+++|++.+...|...++++||+|+++|+++++++..+.++|.++++.+..++.+..   +||..|.+.
T Consensus       118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~  197 (467)
T PRK09556        118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP  197 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence             5899999999999999999999999999999999999999999999999999999999887665542   699999998


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      ++++++..++.+++.++.+++.+..++++.         .++ ...++       +. ..++++.          +..+.
T Consensus       198 g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~---------~~~-~~~~~-------~~-~~~~~~~----------~~~~~  249 (467)
T PRK09556        198 SIIALIIGFIGLRYGSDSPEELGWGKAEEI---------FGE-PISEE-------DK-ETESTDM----------TKWQI  249 (467)
T ss_pred             HHHHHHHHHHHHHhCCCChhhcCCCChhhc---------ccC-ccchh-------hh-ccccccC----------cHHHH
Confidence            888887777766665543322110000000         000 00000       00 0000000          00011


Q ss_pred             -HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          242 -TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                       .+..+++|.+|...+..++......+...|.|.|+++.+|.+..+. .......++.+++.++.|+++||+++|+    
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~----  325 (467)
T PRK09556        250 FVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR----  325 (467)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----
Confidence             2236789999998888888888888889999999999899886554 4556677889999999999999999883    


Q ss_pred             HHHHHHHHHHHHH-HH-HHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccc
Q 012286          320 KLLSAATFLGAIS-CL-TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       320 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  397 (466)
                       ............ .+ .....++.+...+..++.+++.............+.+|++.+|++.|+.+...+..|.+++|.
T Consensus       326 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~  404 (467)
T PRK09556        326 -ALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKV  404 (467)
T ss_pred             -hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhh
Confidence             332222221111 11 111222333333334444433222222222344588888999999999998888657688999


Q ss_pred             hhHHhhh------------cchhhHHHHHHHHHHHHHHHHHHHHH
Q 012286          398 LVGVLQD------------HVNNWRKTTLALTSIFFLAAGIWFVG  430 (466)
Q Consensus       398 ~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
                      +.|++.|            ..+ |...|.+..++.+++.+..+..
T Consensus       405 ~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        405 GLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             hHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999            444 8888887766666665555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=5.5e-39  Score=305.74  Aligned_cols=390  Identities=14%  Similarity=0.124  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .+..+...++...++...|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  108 (434)
T PRK11663         29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS  108 (434)
T ss_pred             HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            34445556677778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  166 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  166 (466)
                      +|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+.+.+|||+.|++.+++++
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~  188 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI  188 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99999999999999999988999999999999999999999999999999999999999999998999999999988777


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH-Hhh
Q 012286          167 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT-KVL  245 (466)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  245 (466)
                      +..++.++..||++++...++.+++..           +. ++.+        ++.++++      .+.+   +.+ +..
T Consensus       189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~-~~~~--------~~~~~~~------~~~~---~~~~~~~  239 (434)
T PRK11663        189 VVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DA-LELA--------QQQEGAG------LSRK---EILTKYV  239 (434)
T ss_pred             HHHHHHHHHcCCCHhhcCCCCcccccc-----------cc-cccc--------hhccccC------CChh---hhHHHHH
Confidence            666555555565433211111100000           00 0000        0000000      0000   111 135


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      ++++.++...+..++.......+..|+|.|+++.++.+.... ...+...+++.++.++.|++.||+.++++........
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~  319 (434)
T PRK11663        240 LLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFA  319 (434)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHH
Confidence            678888888777777777777888899999988788886554 4556677889999999999999984332111111111


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      .........+......+...........+++.............+..|+++|+++.|+.+...+. |.+++|.+.|++.|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~p~~~g~l~~  398 (434)
T PRK11663        320 AGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYL-GAALSGYPLAKVLE  398 (434)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHH-HHHHhcccHHHHHH
Confidence            11111111111111222222222222222222111111223445667789999999999988888 88999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      +.| |...+...+.+.+++.+..
T Consensus       399 ~~g-~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        399 IWH-WTGFFVVISIAAGISALLL  420 (434)
T ss_pred             hcc-cHHHHHHHHHHHHHHHHHH
Confidence            887 8878777766655554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-40  Score=291.63  Aligned_cols=369  Identities=34%  Similarity=0.551  Sum_probs=291.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      ..+++++.++..|...+.-+.+.+++.||++++..|++.+.+.+.+.+++|+.|+++|||+||+++.+|..+|.++.+++
T Consensus        36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~  115 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFAS  115 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHH
Confidence            34677788888999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhH
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEA  162 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~  162 (466)
                      ++++.||++.++|.+.|+|.+...|+++++++|.+|.++|++++++++.+.++|..+|.+.+..+.+..+ |||.|+..+
T Consensus       116 ~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~a  195 (493)
T KOG1330|consen  116 GFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSA  195 (493)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeeh
Confidence            9999999999999999999999999999999999999999999999999999999999999999988766 999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      ++++++.++.+++.+|..+..+++.+.+..                             .         .....+.+++.
T Consensus       196 vl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----------------------------~---------~~~~ts~~kDl  237 (493)
T KOG1330|consen  196 VLGVIVGLLVFLFVREPERGARDEVDGENK-----------------------------M---------VKPFTSVWKDL  237 (493)
T ss_pred             HHHHHHHHHHHhhccCcccccccccccCCc-----------------------------C---------CCCccchHHHH
Confidence            999999999999987643321110000000                             0         01223445677


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccc---c-chhhHHHhhhhhhccccchhhhhhHhhhcccccch
Q 012286          243 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM---S-NADMMFGGVTIVCGIVGTISGGFILDQMGATISNA  318 (466)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  318 (466)
                      +.+.+++.+....+.+....+..+.+..|.|.+.+..+.+   + .....+..+...++.+|.+.+|.++||+.++.++.
T Consensus       238 ~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~  317 (493)
T KOG1330|consen  238 KVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNS  317 (493)
T ss_pred             HHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccc
Confidence            7888888888888888888888888889999876554332   2 23446678888999999999999999976643331


Q ss_pred             h-----HHHHHHHH-HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhh
Q 012286          319 F-----KLLSAATF-LGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF  390 (466)
Q Consensus       319 ~-----~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (466)
                      .     .+...... .++....+...  ..+.+..++++.+.-......+++...+..+.+||+.|.++.++...+...+
T Consensus       318 ~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f  397 (493)
T KOG1330|consen  318 GTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF  397 (493)
T ss_pred             cchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence            1     11111111 12222222211  1234444455455545555667777788899999999999999999999999


Q ss_pred             cccCccchhHHhhhcchhhH
Q 012286          391 GDVPSSPLVGVLQDHVNNWR  410 (466)
Q Consensus       391 g~~~~~~~~g~l~~~~g~~~  410 (466)
                      |..-+|.+.|.+.|+.-+|.
T Consensus       398 gd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  398 GDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             ccCCCcceehhHHHHhhCCC
Confidence            99988989999998765554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=5.9e-39  Score=296.41  Aligned_cols=357  Identities=12%  Similarity=0.033  Sum_probs=260.6

Q ss_pred             HHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHH
Q 012286           14 EYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA   93 (466)
Q Consensus        14 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~   93 (466)
                      ......+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+....++|++.++
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL   83 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34456678999999999999999999999999999999999999999999999887666555545443333337999999


Q ss_pred             HHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHH
Q 012286           94 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus        94 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  173 (466)
                      +.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+++|||+.|++.++++++..++.+
T Consensus        84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999986 4566677799999999999999999999999999999999999999999999999999888888777


Q ss_pred             hhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH
Q 012286          174 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  253 (466)
Q Consensus       174 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (466)
                      +..||++++.+  ++ . .                       .                   ++..+++++++++|.+|.
T Consensus       163 ~~lp~~p~~~~--~~-~-~-----------------------~-------------------~~~~~~~~~ll~~~~~~~  196 (368)
T TIGR00903       163 AALPALPFQAA--EG-F-G-----------------------F-------------------KDAVKEFGALAGRKDLWI  196 (368)
T ss_pred             HHcCCCCCCCC--CC-c-c-----------------------h-------------------HHHHHHHHHHHcChhHHH
Confidence            77787543210  00 0 0                       0                   000124667889999999


Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      ..+..++.....+++.+|+|.|+++ .+.+........+..+.   +.+..+++.||..||..++ ........+.++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r~-~~~~~~~~~~a~~~  271 (368)
T TIGR00903       197 IGAILGFGVALFDNLAIWLEAALRP-AGLEDIAGDAVALAILA---GLIGVAVIPDRVARAGLRS-IYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHH---HHHHHHHhhHHhhhhhhHH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999976 45664433333333443   3444688999987653221 22222222223322


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286          334 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  413 (466)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  413 (466)
                      .......+.+..+...++.+++.....+..+.+..|.+|++.|+++.|+.+...+. +++.+|.+.+.+..  + ....|
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f  347 (368)
T TIGR00903       272 LALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYF  347 (368)
T ss_pred             HHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHH
Confidence            22222333333344445555555555566667788999999999999999988888 77778988887774  3 44566


Q ss_pred             HHHHHHHHHHHHH
Q 012286          414 LALTSIFFLAAGI  426 (466)
Q Consensus       414 ~~~~~~~~~~~~~  426 (466)
                      .+.+...+++.+.
T Consensus       348 ~~~~~~~~i~~~~  360 (368)
T TIGR00903       348 TFLAILITIAFAI  360 (368)
T ss_pred             HHHHHHHHHHHHH
Confidence            6655554444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.3e-38  Score=312.43  Aligned_cols=412  Identities=16%  Similarity=0.154  Sum_probs=289.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      +.+++..+.+++|...++.++|.+.++++++..+.+++.+++.++..++++++|+++||+|||+++++++++.+++++++
T Consensus       170 ~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~  249 (742)
T TIGR01299       170 FVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS  249 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC------------
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  151 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  151 (466)
                      +++++++.++++|++.|++.|+..|...+++.|++|+++|++.+++...+..+|.++++.++..+...            
T Consensus       250 afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~  329 (742)
T TIGR01299       250 SFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQ  329 (742)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999877655432            


Q ss_pred             -cchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCC---Cccc----cccccchhhh--
Q 012286          152 -LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN---DHVS----EDISDQASER--  221 (466)
Q Consensus       152 -~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~--  221 (466)
                       .+||+.+++.++++++.. +..+++||++++.....+.+....  ........+..   .+..    +.++.....+  
T Consensus       330 ~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~--iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  406 (742)
T TIGR01299       330 FHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWM--ILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDEL  406 (742)
T ss_pred             cccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHH--HHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhh
Confidence             369999998887765554 445566888765322211111000  00000000000   0000    0000000000  


Q ss_pred             ---cccccc-----ccchhhhhhhhhhhHHhhhchhH---HHHHHHHHHHHHHHhhhhHhhhhhhhhhh----c------
Q 012286          222 ---SIKSIG-----ESRFLNQLSQFSQDTKVLLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNI----Y------  280 (466)
Q Consensus       222 ---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------  280 (466)
                         +.+.+.     ..+........+.+++.+++++.   .+.+.+.+++..+.++++..|+|.++++.    +      
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~  486 (742)
T TIGR01299       407 IEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKN  486 (742)
T ss_pred             hcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence               000000     00001112233445666666543   34455567777888999999999875431    0      


Q ss_pred             -------------------------------cc-----c-----------------------------------------
Q 012286          281 -------------------------------HM-----S-----------------------------------------  283 (466)
Q Consensus       281 -------------------------------~~-----~-----------------------------------------  283 (466)
                                                     +.     .                                         
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  566 (742)
T TIGR01299       487 FPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKF  566 (742)
T ss_pred             ccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhh
Confidence                                           00     0                                         


Q ss_pred             -----------------------c-----hhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH
Q 012286          284 -----------------------N-----ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  335 (466)
Q Consensus       284 -----------------------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                                             .     .......+..++.+++.+++|+++||+|||     +.+..+.++.++.+++
T Consensus       567 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr-----~~l~~~~~lsai~~ll  641 (742)
T TIGR01299       567 IDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL-----RMLAGSMVLSCISCFF  641 (742)
T ss_pred             hhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHH
Confidence                                   0     001223455678899999999999999998     7777777776666665


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHH
Q 012286          336 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  415 (466)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  415 (466)
                      ....++....+++.++.+++.+..++....++.+.+|++.|++++|+.+...++ |.+++|++.|.+.+..  ...++++
T Consensus       642 ~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl-Gaiigp~i~g~L~~~~--~~~pf~i  718 (742)
T TIGR01299       642 LSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA-AAVLGILIFGSFVGIT--KAAPILF  718 (742)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHH
Confidence            555555555555555666666667777788889999999999999999888887 9999999999887742  3445555


Q ss_pred             HHHHHHHHHHH
Q 012286          416 LTSIFFLAAGI  426 (466)
Q Consensus       416 ~~~~~~~~~~~  426 (466)
                      .+++.++++++
T Consensus       719 ~a~~lll~~ll  729 (742)
T TIGR01299       719 ASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHH
Confidence            55554444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=6.3e-38  Score=297.25  Aligned_cols=369  Identities=18%  Similarity=0.171  Sum_probs=276.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      .....+++++|....+...|.+.+|+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   99 (406)
T PRK11551         20 CFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ   99 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      ++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+||+.|++.+++.
T Consensus       100 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (406)
T PRK11551        100 AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGP  179 (406)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888889999999988776


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..++..++.||+++..+++  .+..             .                 ++           +..+...+.
T Consensus       180 ~~~~~~~~~~l~~~~~~~~~~--~~~~-------------~-----------------~~-----------~~~~~~~~~  216 (406)
T PRK11551        180 LLLVPLLMRWLPESRAFAQAA--GAGK-------------Q-----------------RA-----------PVLRALFGE  216 (406)
T ss_pred             HHHHHHHHHhCCCChhHHhcc--Ccch-------------h-----------------hh-----------hhHHHHhhh
Confidence            666666666666643221000  0000             0                 00           000000000


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      .+.+..+...+..++.....+....|.|.++++ .|.++... .......++.+++.++.|++.||+++|     +.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~  290 (406)
T PRK11551        217 GRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----RVVLL  290 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHH
Confidence            011222333333444444555667788999887 56665443 445666788899999999999999987     55554


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ...............++.+...+...+.+++.....+.......+.+|+++|+++.|+.+...+. |..++|.+.|.+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~  369 (406)
T PRK11551        291 IYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhhhc
Confidence            44433333333333444444545555556655555666677888889999999999999888777 88999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~  424 (466)
                      +.+++...+.....+.+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        370 LGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             cCCchHHHHHHHHHHHHHHH
Confidence            87766655555444443333

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.4e-38  Score=298.05  Aligned_cols=388  Identities=18%  Similarity=0.192  Sum_probs=286.2

Q ss_pred             HHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHH
Q 012286           11 MIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW   90 (466)
Q Consensus        11 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~   90 (466)
                      .++.+|...++...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV   83 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence            35566777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHH
Q 012286           91 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  170 (466)
Q Consensus        91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  170 (466)
                      .+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.+++.++..+
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  163 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV  163 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999988877777


Q ss_pred             HHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhH
Q 012286          171 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  250 (466)
Q Consensus       171 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (466)
                      ..++..||.+++.+..++++..   .   ..+.          ..++.+.++++           +....+.++.+++|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~~----------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  216 (399)
T TIGR00893       164 LWLKFIPDPPQKAKWLTEEEKY---I---VVGG----------LLAEQQGKGPS-----------TPKKYQIKELLKDRR  216 (399)
T ss_pred             HhhheecCCCCccccCCHHHHh---h---cchh----------hcccccccccc-----------CCCccchHHHhcCHH
Confidence            6666656543221110000000   0   0000          00000000000           001224567788899


Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      ++...+..++..........+.|.|+++..+.++... .......++++++.++.+++.||++||+..............
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            9988888888888888889999999998888875544 445667788899999999999999998421100001111111


Q ss_pred             HHHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          330 AISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       330 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      .........   .+..+.......+.++.. ...+.......+..|+++|+++.|+.+...+. |..++|.+.|.+.|..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       297 LVLSLLMFATNYVNIPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNL-GGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHH-hhhhhhHHhhhhccCC
Confidence            111111111   122333333333333333 35667777888999999999999999888877 8899999999999988


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 012286          407 NNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       407 g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      |++...+...+.+.+++.+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            767777777666555544433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=7.6e-38  Score=302.21  Aligned_cols=372  Identities=11%  Similarity=0.021  Sum_probs=249.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccc-hhHH-----HHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQ-DGVL-----SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF   78 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~~-----~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~   78 (466)
                      ...+..++|+||...+++..|.+.++++.+.++ .+++     .++.++++.++++++|+++||+|||+++.++++++++
T Consensus        20 ~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i   99 (490)
T PRK10642         20 AASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSI   99 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            345678899999999999999999999755433 2332     4778899999999999999999999999999999999


Q ss_pred             HHHhhhhhhhHHH--------HHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-
Q 012286           79 ATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-  149 (466)
Q Consensus        79 ~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-  149 (466)
                      +++++++++|+++        +++.|+++|++.|..++...++++|++|+++|+++.++...+..+|..+|+.+...+. 
T Consensus       100 ~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~  179 (490)
T PRK10642        100 STFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIST  179 (490)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999875        8899999999999999999999999999999999999999988888888876654332 


Q ss_pred             -------CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhc
Q 012286          150 -------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  222 (466)
Q Consensus       150 -------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (466)
                             ..+|||+.|++.++++++.. +.....||+++.....++.+            +.+.     +...       
T Consensus       180 ~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~~~~~------------~~~~-----~~~~-------  234 (490)
T PRK10642        180 IVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQHVDKLE------------QGDR-----EGLQ-------  234 (490)
T ss_pred             hcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHHHHhhh------------hhcc-----cccc-------
Confidence                   35799999999776555433 33334466433210000000            0000     0000       


Q ss_pred             cccccccchhhhhhhhhhhHHhhhch-hH-HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccc
Q 012286          223 IKSIGESRFLNQLSQFSQDTKVLLQE-KV-YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  299 (466)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  299 (466)
                      +++             ..++++++++ ++ +.......++....++....|.|.|+++..+.+.... .......++.++
T Consensus       235 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~  301 (490)
T PRK10642        235 DGP-------------KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLF  301 (490)
T ss_pred             ccc-------------cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            000             0123333332 22 2222223344456677788899999988778775443 334455677888


Q ss_pred             cchhhhhhHhhhcccccchhHHHHHHHHHHH-HHHH-H-HHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchh
Q 012286          300 GTISGGFILDQMGATISNAFKLLSAATFLGA-ISCL-T-AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR  376 (466)
Q Consensus       300 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
                      +.++.|+++||+|||     +.+..+..... .... . ....++.....+..++.+++.+...+.......+.+|++.|
T Consensus       302 ~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~R  376 (490)
T PRK10642        302 VQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIR  376 (490)
T ss_pred             HHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            899999999999998     55544433222 1111 1 11122233333333444444444444455566678899999


Q ss_pred             hHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHH
Q 012286          377 ALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  420 (466)
Q Consensus       377 ~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  420 (466)
                      +++.|+.+..... ++.++|.+.+++.+..+++...++......
T Consensus       377 g~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~  419 (490)
T PRK10642        377 YSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVA  419 (490)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999986556666 456789999999886654444444433333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2e-37  Score=295.09  Aligned_cols=364  Identities=15%  Similarity=0.093  Sum_probs=247.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhccccccc---ccccchhHHHH---HHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFK---LNNFQDGVLSS---AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT   80 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s---~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~   80 (466)
                      .+..++|.+|...+++..|.+.+|++   .+..+.+...+   ..+++..++++++|+++||+|||+++..+.+++++++
T Consensus        28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~  107 (432)
T PRK10406         28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGS  107 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            35578999999999999999999985   45554444444   4445555999999999999999999999999999999


Q ss_pred             HhhhhhhhHH--------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc---
Q 012286           81 AGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG---  149 (466)
Q Consensus        81 ~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---  149 (466)
                      +++++++++.        .+++.|+++|++.|..+|...++++|++|+++|+++.++.+.+...|.++++.+...+.   
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~  187 (432)
T PRK10406        108 LVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL  187 (432)
T ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988764        58899999999999999999999999999999999999999988888888887655443   


Q ss_pred             -----CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccc
Q 012286          150 -----SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  224 (466)
Q Consensus       150 -----~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (466)
                           +.+|||++|++.++++++...+ ....||+++.    ++ + .                              .+
T Consensus       188 ~~~~~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~~~~----~~-~-~------------------------------~~  230 (432)
T PRK10406        188 EDAELREWGWRIPFALGAVLAVVALWL-RRQLDETSQQ----ET-R-A------------------------------LK  230 (432)
T ss_pred             CHHHHhccchHHHHHHHHHHHHHHHHH-HhcCCCCchH----HH-h-h------------------------------hc
Confidence                 2579999999887766544222 1222332110    00 0 0                              00


Q ss_pred             cccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHH-HHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccch
Q 012286          225 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTI  302 (466)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  302 (466)
                      +             ..++++++++++.+...+...+ .....+.+..|+|.|+++..+.+..+. ....+..+...++.+
T Consensus       231 ~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~  297 (432)
T PRK10406        231 E-------------AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQP  297 (432)
T ss_pred             c-------------cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0             0135566777777766555444 356677788999999988888875444 334455566677788


Q ss_pred             hhhhhHhhhcccccchhHHHHHHHHHHHHHHH-HHH-H--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhH
Q 012286          303 SGGFILDQMGATISNAFKLLSAATFLGAISCL-TAF-C--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  378 (466)
Q Consensus       303 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
                      +.|+++||++||     +.+.....+...... ... .  ..+......+..+..+..+...+.......|.+|++.|++
T Consensus       298 ~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t  372 (432)
T PRK10406        298 LIGALSDKIGRR-----TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRAL  372 (432)
T ss_pred             HHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccch
Confidence            899999999988     444433332222211 111 1  1122222222222222333333344556678899999999


Q ss_pred             HHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 012286          379 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       379 ~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  426 (466)
                      +.|+.+...+...+...|.+.+.+ +..|.+...+++.+...+++.+.
T Consensus       373 ~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        373 GVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHH
Confidence            999998776653334467777754 55565655555544444444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.7e-37  Score=291.52  Aligned_cols=348  Identities=12%  Similarity=-0.025  Sum_probs=261.7

Q ss_pred             HHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012286           18 LVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   97 (466)
Q Consensus        18 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   97 (466)
                      ...++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            55788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHHHHHHHHHHhhc
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      ++|++.+...+....++.|++| ++|+++++++..+..+|..+|+.+++++.++. +||+.+.+.++..++..+..+...
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999997 77999999999999999999999999888775 899998877665544333222211


Q ss_pred             cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHH
Q 012286          177 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  256 (466)
Q Consensus       177 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (466)
                      ++.+     +++++..                                               ...++.+++++.+...+
T Consensus       185 ~~~~-----~~~~~~~-----------------------------------------------~~~~~~l~~~~~~~l~~  212 (393)
T PRK09705        185 AREV-----ASSHKTT-----------------------------------------------TTPVRVVFTPRAWTLGV  212 (393)
T ss_pred             cCCC-----ccccCCC-----------------------------------------------cCCcccccCHhHHHHHH
Confidence            1100     0000000                                               00112345666777666


Q ss_pred             HHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH
Q 012286          257 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  335 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      ..++....+.....|.|.++++ .+.+.... ....+..+++++++++.+++.||+++|     +....+..+.......
T Consensus       213 ~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~~~~  286 (393)
T PRK09705        213 YFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVGFCG  286 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHHH
Confidence            6666677777888999999987 67775544 455677889999999999999999987     5555444444443333


Q ss_pred             HHH-HhhHHHHHHHHHHHHHHHHhcCccceeeeecccC-CchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286          336 AFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  413 (466)
Q Consensus       336 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  413 (466)
                      ... ..+....  ...+.+++.+...+.......+..+ ++++++..|+.+...+. +..++|.+.|++.|..|+|...+
T Consensus       287 ~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~~~  363 (393)
T PRK09705        287 FIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFI-IAGLAPWFSGVLRSISGNYLMDW  363 (393)
T ss_pred             HHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHH
Confidence            222 2222221  2233445555555544445556665 47899999999888877 77889999999999998888777


Q ss_pred             HHHHHHHHHHHHHH
Q 012286          414 LALTSIFFLAAGIW  427 (466)
Q Consensus       414 ~~~~~~~~~~~~~~  427 (466)
                      .+...+.+......
T Consensus       364 ~~~~~~~~~~~~~~  377 (393)
T PRK09705        364 AFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666655444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.1e-36  Score=291.40  Aligned_cols=385  Identities=13%  Similarity=0.062  Sum_probs=262.5

Q ss_pred             HHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh----hH
Q 012286           14 EYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DF   89 (466)
Q Consensus        14 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~   89 (466)
                      ..+...+++..|.+.++ |+|+.+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+++++++    ++
T Consensus        42 ~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         42 YLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccH
Confidence            33444567788999888 99999999999999999999999999999999999999999999999999888763    78


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhh-hhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      +.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+|+++..+....+||+.|++.++++++.
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~  200 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILV  200 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88999999999999988888888999999999999999999999999864 55655433333458999999999888887


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh-HHhhhc
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQ  247 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  247 (466)
                      .++.+++.||++++...+++++..          ++..     +..++    ++.++       .+.   .+. .+.+++
T Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~----~~~~~-------~~~---~~~~~~~~~~  251 (452)
T PRK11273        201 ALFAFAMMRDTPQSCGLPPIEEYK----------NDYP-----DDYNE----KHEQE-------LTA---KQIFMQYVLP  251 (452)
T ss_pred             HHHHHHHccCCHhhcCCCChhhhh----------hccc-----ccccc----ccCCC-------ccH---HHHHHHHHHc
Confidence            777777767654331111100000          0000     00000    00000       000   011 124678


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      ++.+|...+..++.....+....|.|.|+++..+.+.... ....+..++.+++.++.|+++||++++++.  .......
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~--~~~~~~~  329 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFM  329 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--hHHHHHH
Confidence            8999988888888777777888999999999888775444 444566778888999999999999543211  1111111


Q ss_pred             HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          327 FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       327 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      .+..........  ..+.+...+.....+...............+.+|++.||+++|+.+...+..+...+|.+.|.+.|
T Consensus       330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~  409 (452)
T PRK11273        330 TLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  409 (452)
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            211111111111  112222222233333322221122223456888889999999999877777334457999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      +.| |...|.....+.+++++....+.
T Consensus       410 ~~g-~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        410 FFG-WDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence            987 88888877776666655555444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=9.3e-37  Score=292.82  Aligned_cols=376  Identities=12%  Similarity=0.012  Sum_probs=259.3

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD   88 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~   88 (466)
                      ..+.+.++....++..|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++
T Consensus        44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s  123 (476)
T PLN00028         44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS  123 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            34555566667788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc----C-----CcchhHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFW  159 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----~-----~~gwr~~f~  159 (466)
                      ++.+++.|++.|++.+... ....+++|++|+++|++++++.....++|..+++.+.+.+.    +     ..|||+.|+
T Consensus       124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~  202 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF  202 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence            9999999999999988654 46678999999999999999998877777777766554432    1     258999999


Q ss_pred             HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                      +.++++++..++.+++.++.++.     +.+..         ++..                +.++          .+..
T Consensus       203 i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~---------~~~~----------------~~~~----------~~~~  242 (476)
T PLN00028        203 VPGLLHIIMGILVLTLGQDLPDG-----NYREL---------KKSG----------------TMPK----------DSFS  242 (476)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCCC-----chhhH---------HhcC----------------cccc----------ccHH
Confidence            99998887776666553321110     00000         0000                0000          0011


Q ss_pred             hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccch
Q 012286          240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  318 (466)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  318 (466)
                      +.+++.++++++|...+..++.......+..+.|.|+.+.++.++... .+..+..++++++++++|+++||++||...+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~  322 (476)
T PLN00028        243 KVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR  322 (476)
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc
Confidence            235566788888877776666655566677889999988888886554 5556778999999999999999999874321


Q ss_pred             -hH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          319 -FK-LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       319 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                       ++ .......+..+.++.....++.+...+..++.+++.+...+.......+ +.++++|++.|+.+...     .+++
T Consensus       323 ~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~g-----~lg~  396 (476)
T PLN00028        323 GRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPF-VSRRSLGVISGLTGAGG-----NVGA  396 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcc-cChhhchhhhhhhhccc-----cHHH
Confidence             12 2222222222222222223333333444444444444444444444443 46688999998875432     3355


Q ss_pred             chhHHhhhc--chhhHHHHHHHHHHHHHHHHHHHHHH
Q 012286          397 PLVGVLQDH--VNNWRKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       397 ~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      .+.+.+.+.  .++|...|++.+++.+++.++.++.+
T Consensus       397 ~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        397 VLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            555555542  34588888888777777666665543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=3.1e-36  Score=282.44  Aligned_cols=365  Identities=14%  Similarity=0.127  Sum_probs=268.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+....+..+.......+.+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~   86 (382)
T PRK10091          7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT   86 (382)
T ss_pred             HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            45566777888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  164 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  164 (466)
                      +++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++|++++.+.+..+||+.|++.+++
T Consensus        87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~  166 (382)
T PRK10091         87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF  166 (382)
T ss_pred             HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence            99999999999999999999888888999999999999999999999999999999999999999989999999999988


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHh
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  244 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (466)
                      .++..+..++..||.+++    ++.+ .                                              .+.+ +
T Consensus       167 ~~~~~~~~~~~lp~~~~~----~~~~-~----------------------------------------------~~~~-~  194 (382)
T PRK10091        167 NIAVLASIYFWVPDIRDE----AKGG-L----------------------------------------------REQF-H  194 (382)
T ss_pred             HHHHHHHHHHhCCCCCcc----cccC-H----------------------------------------------HHHH-H
Confidence            777766665555653210    0000 0                                              0011 2


Q ss_pred             hhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          245 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      .++++..+.......+..........+.+.++++..|.++... .+.....++.+++.++.+++.||+++|     +.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~  269 (382)
T PRK10091        195 FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAA  269 (382)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch-----hHHH
Confidence            3455666655544444444444445566778877778776554 455677888999999999999999987     5555


Q ss_pred             HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhcCccceeeeecc-cCCchhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          324 AATFLGAISCLTA-FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      ....+..+..+.. ...++.+.......+.+.+.....++......+. .+++.++.+.  .+...+. |.++||.+.|.
T Consensus       270 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~Gp~~~G~  346 (382)
T PRK10091        270 VTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNL-GSAIGAYCGGM  346 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHH-HHHHHHHHhHH
Confidence            4444444433333 2233333333333344443333333333333333 3445555543  3445555 99999999999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          402 LQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       402 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      +.|..++|...+...+....+.......
T Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        347 MLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            9998777888887776665555544443

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=3.5e-36  Score=283.32  Aligned_cols=366  Identities=12%  Similarity=0.064  Sum_probs=273.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .+..++++.+....+..+|++.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++..++.++++++
T Consensus        13 ~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~   92 (394)
T PRK03699         13 FLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS   92 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            45567888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcchhHHHHHhHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILM  165 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~  165 (466)
                      ++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+. +..+||+.|.+.+++.
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~  172 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY  172 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888765 4579999999988877


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..++.++.  +.++    +++++..            +.     +         + .                 .+. 
T Consensus       173 ~~~~~~~~~~--~~p~----~~~~~~~------------~~-----~---------~-~-----------------~~~-  201 (394)
T PRK03699        173 VAIFILTLFS--EFPA----LGKHAPK------------AD-----K---------P-V-----------------AKE-  201 (394)
T ss_pred             HHHHHHHHhc--CCcc----ccccCcc------------cc-----C---------c-c-----------------ccc-
Confidence            6655443321  1110    0000000            00     0         0 0                 000 


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      ..++.++...+..++.....+.+..|.|.|+++.++.++.+. .+.+...++..+++++.+++.||+++|     +.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~l~~  276 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----RILTV  276 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----hHHHH
Confidence            013455666666666666677788999999999888886554 445667788899999999999999998     55544


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ...+......+....++.+......+..+++.+..++.......+.. ++.+++..|......+. |..++|.+.|++.|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-g~~i~p~~~G~l~~  354 (394)
T PRK03699        277 LAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFILTCGTI-GTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHhhhH-HHHHHHHHHHHHHH
Confidence            44444444444433444444444555566655555555554444444 44566777887766666 88999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      ..| +...++....+.+++.+..+...
T Consensus       355 ~~g-~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        355 HFG-LQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HhC-chhhhhhhHHHHHHHHHHHHHHH
Confidence            877 66677666666555555444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1e-36  Score=294.54  Aligned_cols=385  Identities=13%  Similarity=0.062  Sum_probs=285.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      ..+++..++...|..+++..+|.+.+|+|.+.++.+|+.+.|.+++.++.+++|+++||+|||++++.+.+++.++++++
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~   88 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA   88 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccC-CCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhH
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  162 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  162 (466)
                      ++++|++.++++|+++|+|.+...|.....+.+++ |+++|+++++++.....+|..+||.+++.+.++.+||+.|++..
T Consensus        89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~  168 (495)
T PRK14995         89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV  168 (495)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence            99999999999999999999999988888887776 67899999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccc-------cccccccCCCCccccccccc--------hhhhcccccc
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------SEGSEASNLNDHVSEDISDQ--------ASERSIKSIG  227 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  227 (466)
                      .++++..++.++..|+.+++.  +++.+.......       ....................        ..-...+.  
T Consensus       169 ~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~--  244 (495)
T PRK14995        169 PIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQL--  244 (495)
T ss_pred             HHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh--
Confidence            888877777777777643211  010000000000       00000000000000000000        00000000  


Q ss_pred             ccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhh
Q 012286          228 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF  306 (466)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  306 (466)
                            +.++...+ .+++|+|.+....+..++......+...+.|.|+++.++.++.+. .......++..++.++.|+
T Consensus       245 ------~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~  317 (495)
T PRK14995        245 ------AASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI  317 (495)
T ss_pred             ------cCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00001111 357788888887777777777777888899999999999987665 4445567788889999999


Q ss_pred             hHhhhcccccchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH
Q 012286          307 ILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  383 (466)
Q Consensus       307 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  383 (466)
                      +.||+++|     +.+..+..+..+........   ++.+......++.+++.+...++......+.+|+++++.+.++.
T Consensus       318 l~~r~g~~-----~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~  392 (495)
T PRK14995        318 LVSRLGLR-----LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIE  392 (495)
T ss_pred             HHHHcCch-----HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHH
Confidence            99999987     55554544444433322221   23444455667778888877777788888889999999999999


Q ss_pred             HHHHHhhcccCccchhHHhhhc
Q 012286          384 TVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       384 ~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      +...+. |..+|+.+.|.+.++
T Consensus       393 ~~~~~l-G~~~G~ai~g~i~~~  413 (495)
T PRK14995        393 TMAYEL-GAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHH
Confidence            888887 888899898888763

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.1e-35  Score=279.12  Aligned_cols=346  Identities=14%  Similarity=0.089  Sum_probs=258.2

Q ss_pred             HHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           13 KEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        13 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      ...+.......+|.+.+|+|.++++.|+..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+
T Consensus        32 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l  111 (394)
T PRK10213         32 LIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLL  111 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence            34444444557889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHH
Q 012286           93 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus        93 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      ++.|+++|++.+...|...+++.|++|+|+|++++++...+.++|..+||++++.+.+.+|||+.|++.++++++..+..
T Consensus       112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766655444


Q ss_pred             HhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHH
Q 012286          173 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  252 (466)
Q Consensus       173 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (466)
                      ....||.+++     +++ .                                              .+..++.+++|.++
T Consensus       192 ~~~~p~~~~~-----~~~-~----------------------------------------------~~~~~~~l~~~~~~  219 (394)
T PRK10213        192 IKSLPSLPGE-----PSH-Q----------------------------------------------KQNTFRLLQRPGVM  219 (394)
T ss_pred             HHHCCCCCcc-----ccc-c----------------------------------------------hhHHHHHhcCHHHH
Confidence            4334542100     000 0                                              01234567888888


Q ss_pred             HHHHHHHHHHHHhhhhHhhh-hhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHH
Q 012286          253 VNVLGYIAYNFVIGAYSYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  330 (466)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      ...+..++..........+. |.+. +..|.++... .......++++++.++.+++.||.+++     ...........
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~  293 (394)
T PRK10213        220 AGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHH
Confidence            76666555555555555665 5554 4567776554 444556678888888889998884332     33333333333


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhH
Q 012286          331 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  410 (466)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  410 (466)
                      ..+++....++.+.......+.+++.+...+.....+.+..| ++++++.+......+. |..+||.+.|.+.|..| +.
T Consensus       294 ~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-g~~~G~~l~G~l~~~~g-~~  370 (394)
T PRK10213        294 SALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQL-ANTCGAAIGGYALDNIG-LT  370 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hh
Confidence            333333344455555566666777777776666767777776 5566777766555555 88899999999999877 54


Q ss_pred             HHHHHHHHH
Q 012286          411 KTTLALTSI  419 (466)
Q Consensus       411 ~~~~~~~~~  419 (466)
                      ..+...+.+
T Consensus       371 ~~~~~~~~~  379 (394)
T PRK10213        371 SPLMLSGTL  379 (394)
T ss_pred             hHHHHHHHH
Confidence            455544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.8e-36  Score=289.37  Aligned_cols=382  Identities=14%  Similarity=0.090  Sum_probs=272.6

Q ss_pred             HHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHH-HH
Q 012286           18 LVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CR   96 (466)
Q Consensus        18 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r   96 (466)
                      ..++...|.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG  115 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44677889999999999999999999999999999999999999999999999999999999999999999999875 57


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      +++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..++..
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999777778889999996 67999999999999999999999999999989999999999988876665555444


Q ss_pred             cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHH
Q 012286          177 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  256 (466)
Q Consensus       177 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (466)
                      |+.......+++.+        ...+....    .++.+  .....          ++..+ ..++ +++++|.++...+
T Consensus       195 ~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~--~~~~~----------~~~~~-~~~~-~~~~~~~~~~~~~  248 (455)
T TIGR00892       195 PVGPSQRVSKSKSK--------EGLPPDGS----TKKLS--KKSTA----------EKINR-FLDF-SLFTHRGFLVYLS  248 (455)
T ss_pred             CCCccccccccccc--------ccCCCCCc----ccccc--ccchh----------hhhhh-hcch-HHhcCchHHHHHH
Confidence            32111000000000        00000000    00000  00000          00000 0112 4678888888887


Q ss_pred             HHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH
Q 012286          257 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  335 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      ..++..........++|.|.++ .+.++... ...++..++.+++.++.+++.||...+.++ +..+..+........++
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHV-QYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHHHHHH
Confidence            7777777777777888999876 56765444 445667788888889999999974322111 12222222222222223


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHH
Q 012286          336 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  415 (466)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  415 (466)
                      ....++.+...+...+.+++.+...+.....+.+.+|+++++++.|+.+...+. |.+++|.+.|.+.|..++|...+..
T Consensus       327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~f~~  405 (455)
T TIGR00892       327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC-AVLIGPPLAGRLVDATKNYKYIFYA  405 (455)
T ss_pred             HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH-HHHccccceeeeehhcCCcchHHHH
Confidence            333445555666666777776666677778888889999999999999888777 9999999999999988778878877


Q ss_pred             HHHHHHHHHHHHHH
Q 012286          416 LTSIFFLAAGIWFV  429 (466)
Q Consensus       416 ~~~~~~~~~~~~~~  429 (466)
                      .+++.+++.+....
T Consensus       406 ~~~~~li~~~~~~~  419 (455)
T TIGR00892       406 SGSIVVSAGLFLAI  419 (455)
T ss_pred             hhHHHHHHHHHHHH
Confidence            77665555544333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=2.4e-36  Score=292.88  Aligned_cols=397  Identities=14%  Similarity=0.107  Sum_probs=254.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccc-----cccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDF-----KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFA   79 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~   79 (466)
                      ..++..+.++||...++.+.|.+.+++     +.++.+.+++.+.+.+++.++++++|+++||+|||+++.++.++..++
T Consensus        20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~   99 (502)
T TIGR00887        20 IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA   99 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            355667899999999999998877642     345667789999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhh------HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC---
Q 012286           80 TAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---  150 (466)
Q Consensus        80 ~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---  150 (466)
                      +++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.++..+..   
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~  179 (502)
T TIGR00887       100 TVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFK  179 (502)
T ss_pred             HHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999988865      78999999999999999999999999999999999999999999999999999988765421   


Q ss_pred             --------------------CcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCcc
Q 012286          151 --------------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV  210 (466)
Q Consensus       151 --------------------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (466)
                                          ..+||+.|.+.++++++..+. .+++||+++....++++++...+. ..+....+..++ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~-~~~~~~~~~~~~-  256 (502)
T TIGR00887       180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQAASD-MSAVLQVKIEAE-  256 (502)
T ss_pred             cccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHHHHH-HHHHhccccccC-
Confidence                                237999998888776655444 455699887532111111000000 000000000000 


Q ss_pred             ccccccchhhhccccccccchhhhhhhhhhhHHhhhch----hH---HHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc
Q 012286          211 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE----KV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  283 (466)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (466)
                      .++.++..+++ ++.             ..++++++++    +.   .......++......++...|.|.++++ .|.+
T Consensus       257 ~~~~~~~~~~~-~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~  321 (502)
T TIGR00887       257 PDEVEKASTAV-EVP-------------KASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYS  321 (502)
T ss_pred             cccccchhccc-cch-------------hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCC
Confidence            00000000000 000             0123333321    11   1112223333444556667788888865 4444


Q ss_pred             chh-------------hHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH-Hh--hHHHHHH
Q 012286          284 NAD-------------MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LS--SLYGFLA  347 (466)
Q Consensus       284 ~~~-------------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~  347 (466)
                      +..             .....+..++.+++.++.++++||+|||     +.++.+..+..+.+.+... ..  +......
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR-----~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  396 (502)
T TIGR00887       322 PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-----PIQLMGFFILTVLFFVLGFAYNHLSTHGFLA  396 (502)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-----hHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            211             0122333456677888999999999998     5555444443333322221 11  1111122


Q ss_pred             HHHHHHHHHH-hcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch---------hhHHHHHHHH
Q 012286          348 LFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN---------NWRKTTLALT  417 (466)
Q Consensus       348 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g---------~~~~~~~~~~  417 (466)
                      ...+..++.+ ...+....+..|.+|++.|+++.|+.+...++ +++++|.+.|.+.|..+         ++...+.+.+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~  475 (502)
T TIGR00887       397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFA  475 (502)
T ss_pred             HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh-HHHHHHHHhhhhhccccccccccccccchHHHHHHH
Confidence            2222222222 23333445567888889999999999988888 88899999999988431         1334555555


Q ss_pred             HHHHHHHH
Q 012286          418 SIFFLAAG  425 (466)
Q Consensus       418 ~~~~~~~~  425 (466)
                      ++.+++.+
T Consensus       476 ~~~~~~~i  483 (502)
T TIGR00887       476 LFMFLGIL  483 (502)
T ss_pred             HHHHHHHH
Confidence            55444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.6e-36  Score=282.85  Aligned_cols=352  Identities=12%  Similarity=0.030  Sum_probs=265.4

Q ss_pred             HHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 012286           17 LLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICR   96 (466)
Q Consensus        17 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r   96 (466)
                      ....++..|.+.+|+|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      ++.|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..+||+.|++.++++++..+..+++.
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence            99999999888888889999987 56999999999999999988777777777778999999999998888777776665


Q ss_pred             cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHH
Q 012286          177 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  256 (466)
Q Consensus       177 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (466)
                      |+.+++.    +++..                    +.+       ++              ..+.++.++++.++...+
T Consensus       178 ~~~~~~~----~~~~~--------------------~~~-------~~--------------~~~~~~~~~~~~~~~~~~  212 (377)
T TIGR00890       178 GYPPGQL----IKTNI--------------------EVS-------VK--------------DYTVWEMLRTPQFWVLYL  212 (377)
T ss_pred             ecCchhc----cccCc--------------------ccc-------hh--------------hhhHHHHHcCccHHHHHH
Confidence            4322110    00000                    000       00              012345677788877766


Q ss_pred             HHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH
Q 012286          257 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  335 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      ..++..........+.+.|.++ .+.++... ....+..+..+++.++.+++.||++||     +.+..+..+.....+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~  286 (377)
T TIGR00890       213 SFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMAA  286 (377)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHH
Confidence            6665555555555566666654 55554433 455677788899999999999999988     5555555544444443


Q ss_pred             HHHHhh--HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286          336 AFCLSS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  413 (466)
Q Consensus       336 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  413 (466)
                      ....++  .........+.++..+...+.......|.+|+++|+++.|+.+...+. |..++|.+.|.+.|+.| |...+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~f  364 (377)
T TIGR00890       287 MLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAV-AGIFGGLIASHALTEIG-FEYTF  364 (377)
T ss_pred             HHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhHH
Confidence            333332  222223334455555555555566777888999999999999887777 88999999999999876 77777


Q ss_pred             HHHHHHHHH
Q 012286          414 LALTSIFFL  422 (466)
Q Consensus       414 ~~~~~~~~~  422 (466)
                      ...+.+.++
T Consensus       365 ~~~~~~~~~  373 (377)
T TIGR00890       365 IVTGAFALT  373 (377)
T ss_pred             HHHHHHHHH
Confidence            665554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=4.5e-36  Score=286.39  Aligned_cols=357  Identities=14%  Similarity=0.121  Sum_probs=254.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      ..+..+.++++.....+..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~  102 (426)
T PRK12307         23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL  102 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      +++++.++++|+++|++.+...+....++.|++|+|+|+++.++...+..+|.++++.+.+.+.+..+||+.|++..+..
T Consensus       103 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~  182 (426)
T PRK12307        103 ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV  182 (426)
T ss_pred             HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999989899999998854332


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++ .+......||+++.    ++++ .         ++.+.               + ++       ...++...+++++
T Consensus       183 ~~-~~~~~~~~p~~~~~----~~~~-~---------~~~~~---------------~-~~-------~~~~~~~~~~~~~  224 (426)
T PRK12307        183 LL-VIYIRARAPESKEW----EEAK-L---------SGKGK---------------H-SQ-------SAWSVFSLSMKGL  224 (426)
T ss_pred             HH-HHHHHHHCCCChHH----HHhh-h---------hcccc---------------c-cc-------cchhhhhHHHHHH
Confidence            22 11111111221110    0000 0         00000               0 00       0000111245667


Q ss_pred             hchhHHHHHHHHHHH---HHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          246 LQEKVYVVNVLGYIA---YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      ++++.++........   ..........+.|.|+++. +.++... .......++.+++.++.+++.||++||     +.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~  298 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK-----KT  298 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HH
Confidence            777776654433222   2223334567889888874 6654433 444566788899999999999999988     55


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV--FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      ...+..+..+..+................+.+...  ....+..+..+.+.+|++.||++.|+.+...+. ++.++|.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~  377 (426)
T PRK12307        299 FSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAA  377 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHH
Confidence            55555444443333322221111111122222211  111233445667888999999999999888877 888999999


Q ss_pred             HHhhhcch
Q 012286          400 GVLQDHVN  407 (466)
Q Consensus       400 g~l~~~~g  407 (466)
                      |++.|+.|
T Consensus       378 g~l~~~~g  385 (426)
T PRK12307        378 TWLGITMG  385 (426)
T ss_pred             HHHHHccc
Confidence            99999887

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.2e-36  Score=287.12  Aligned_cols=379  Identities=11%  Similarity=0.082  Sum_probs=268.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      ...+..+.++++....+++.|.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   95 (405)
T TIGR00891        16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG   95 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc--hhHHHHHhH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEA  162 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~  162 (466)
                      ++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+  ||+.|++.+
T Consensus        96 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~  175 (405)
T TIGR00891        96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI  175 (405)
T ss_pred             HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998887665  999998876


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      +..++.. +.....||+++..+++++++..                  .+..++....++..+       ...++.....
T Consensus       176 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~  229 (405)
T TIGR00891       176 LPIIFAL-WLRKNIPEAEDWKEKHAGKALV------------------RTMVDILYGGEHRIA-------NIVMTLAAAM  229 (405)
T ss_pred             HHHHHHH-HHHHhCCCChhHHHHhhhhhhh------------------hhHHHHHhccchhhh-------hhhhhhhHHh
Confidence            5544433 2333335532211000000000                  000000000000000       0000000111


Q ss_pred             Hhhhc--hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          243 KVLLQ--EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       243 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      ++..+  .+.+....+..............+.|.|+.+..+.++.+. .+.....++.+++.++.+++.||++||     
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~-----  304 (405)
T TIGR00891       230 VQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----  304 (405)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----
Confidence            11111  1112222333333344455666788999988888876554 445667788899999999999999998     


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccch
Q 012286          320 KLLSAATFLGAISCLT-AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  398 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  398 (466)
                      +.+..+.......... ....++.+......++.+++.....+.....+.+..|+++|+++.|+.+...+. |..++|++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~g~~~  383 (405)
T TIGR00891       305 KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL-GGALAPII  383 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH-HHHHHHHH
Confidence            5554444433222222 222233333333334455555555566677788889999999999999888877 88999999


Q ss_pred             hHHhhhcchhhHHHHHH
Q 012286          399 VGVLQDHVNNWRKTTLA  415 (466)
Q Consensus       399 ~g~l~~~~g~~~~~~~~  415 (466)
                      .|.+.|+.|.|...+..
T Consensus       384 ~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       384 GALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHhccccchhHHh
Confidence            99999998877654443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=4.2e-36  Score=289.26  Aligned_cols=384  Identities=14%  Similarity=0.131  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHhhhhhcccc----------------------cccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCch
Q 012286           10 AMIKEYVLLVAGFIHGSCRG----------------------DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR   67 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~   67 (466)
                      ..+...|...++...+.+.+                      |++++..+.|++.+.+.+++.+++++.|+++||+|||+
T Consensus        28 ~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~  107 (465)
T TIGR00894        28 NVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW  107 (465)
T ss_pred             HHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch
Confidence            33455677778888888876                      89999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHhhhhh--hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhh
Q 012286           68 LIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  145 (466)
Q Consensus        68 ~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~  145 (466)
                      ++..+.++++++.+++.++  ++++.+++.|+++|++.+...|....++.||+|+++|++++++...+..+|.+++++++
T Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~  187 (465)
T TIGR00894       108 SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS  187 (465)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887654  56888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCC-cchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccc
Q 012286          146 GVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  224 (466)
Q Consensus       146 ~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (466)
                      +.+.+. .+||+.|++.++++++..++.+++.|++++..+. +++++.                   +.+++..+.+.++
T Consensus       188 ~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~-------------------~~i~~~~~~~~~~  247 (465)
T TIGR00894       188 GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFEK-------------------KYINSSLQGQKGS  247 (465)
T ss_pred             HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHHH-------------------HHHHhhcccccCC
Confidence            999988 4999999999998887777666665554322110 000000                   0000000000000


Q ss_pred             cccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchh
Q 012286          225 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS  303 (466)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  303 (466)
                      .           +...+++++++++.+|...+..++.....+.+.+|+|.|+++.++.+.... ...++..++..++.++
T Consensus       248 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~  316 (465)
T TIGR00894       248 T-----------RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIF  316 (465)
T ss_pred             C-----------CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHH
Confidence            0           001246788899999999999899888888999999999999888886554 5556778889999999


Q ss_pred             hhhhHhhhcccccchhH----HHHHHHHHHHHHHH-HHHH-HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhh
Q 012286          304 GGFILDQMGATISNAFK----LLSAATFLGAISCL-TAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRA  377 (466)
Q Consensus       304 ~g~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (466)
                      +|++.||+++|+...++    .............. .... ..+.+..+..+.+.+.+.+...+..... ..+..|+.+|
T Consensus       317 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g  395 (465)
T TIGR00894       317 AGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLIN-SLDLAPRFLG  395 (465)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhc-hhhcChhHHH
Confidence            99999998765332222    11111111111111 1111 1233333334444444443333333333 3344456899


Q ss_pred             HHHHHHHHHHHhhcccCccchhHHhhhcc--hhhHHHHHHHHHHHHHHHHH
Q 012286          378 LSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       378 ~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~  426 (466)
                      .+.|+.+....+ +..++|.+.|.+.|..  +.|...+.+.++..+++.++
T Consensus       396 ~~~g~~~~~~~l-~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       396 FIKGITGLPGFI-GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999888877 8888999999988754  45767777666555554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.7e-36  Score=285.16  Aligned_cols=369  Identities=15%  Similarity=0.160  Sum_probs=270.9

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF   89 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~   89 (466)
                      .+...++...+++..|.+.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence            34566778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhh-hhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++| .+++.+.+..+||+.|++.+++.++.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 57777777889999999999888777


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  248 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (466)
                      .++.++..||.++..+.++.++..              .++.++    ..+.+ +++         ........+.++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~~~~~-~~~---------~~~~~~~~~~~~~~  215 (379)
T TIGR00881       164 SLICFLLLRDSPQSCGLPPAEEMP--------------NEEPDG----DAEKK-EEE---------LTKKQIFLQYVLLN  215 (379)
T ss_pred             HHHHheeeCCCccccccCccccCc--------------cccccc----ccccc-ccc---------ccchHHHHHHHHhc
Confidence            777666666543321111100000              000000    00000 000         00011234567788


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      |.++...+..++..........+.|.|+++..+.++... .......++.+++.++.+++.||..++++.  ........
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--~~~~~~~~  293 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG--PLAVFFMA  293 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch--HHHHHHHH
Confidence            999888888888888888888999999998888876554 455667788899999999999986544211  11111111


Q ss_pred             HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc
Q 012286          328 LGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       328 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      ...........  ..+.+.......+.+.......+.......+..|++.|+++.|+.+...+. |..++|.+.|.+.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       294 LIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYLADG  372 (379)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHHHHh
Confidence            11111222111  122333333334444433333333445667888899999999999887777 888999999999998


Q ss_pred             chhhH
Q 012286          406 VNNWR  410 (466)
Q Consensus       406 ~g~~~  410 (466)
                      .| |+
T Consensus       373 ~g-~~  376 (379)
T TIGR00881       373 FG-WA  376 (379)
T ss_pred             hc-cc
Confidence            76 54

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=3.5e-36  Score=281.61  Aligned_cols=353  Identities=16%  Similarity=0.094  Sum_probs=277.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      ....++..+......+.+|.+..|++.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777788888899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             h-----hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHh
Q 012286           87 F-----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE  161 (466)
Q Consensus        87 ~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  161 (466)
                      +     |++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8     99999999999999999999999999999999999999999999999999999999999999989999999998


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      ++..++..+..+...+++++.   +++++ .                  ++                    +..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~~--------------------~~~~~~~~~  202 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAA---SEIQA-L------------------SN--------------------AVLRDTREG  202 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCC---ccccc-c------------------ch--------------------hHHHHHHhH
Confidence            876665554444332211000   00000 0                  00                    000111234


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhH-hhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      ++.++++|.++...+..++......... .+.|.+.++.++.++... .......++.+++.++.+++.||.+|+     
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  277 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----  277 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----
Confidence            6677888888887777777666666555 788999888777776554 444566788888999999999999887     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccch
Q 012286          320 KLLSAATFLGAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  398 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  398 (466)
                      +.+..+..+...........++ .+...+..++.+++.+...+.......+.+|+++|+++.|+.+...+. +..++|.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~  356 (365)
T TIGR00900       278 ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLIL  356 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            5555544444444444433332 555666667777777777777788888999999999999999888887 88889999


Q ss_pred             hHHhhhcch
Q 012286          399 VGVLQDHVN  407 (466)
Q Consensus       399 ~g~l~~~~g  407 (466)
                      .|.+.|+.|
T Consensus       357 ~g~l~~~~g  365 (365)
T TIGR00900       357 AGPLADHLG  365 (365)
T ss_pred             HHHHHHHcC
Confidence            999998653

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.3e-35  Score=280.85  Aligned_cols=373  Identities=12%  Similarity=0.088  Sum_probs=254.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhc-ccccc--cccccchhHHH-----HHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGS-CRGDF--KLNNFQDGVLS-----SAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW   76 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~   76 (466)
                      ...+..++|.||...++++.|. +.+++  +.++. .+++.     ++.+++..+++++.|+++||+|||+++..+.+++
T Consensus        26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~  104 (438)
T PRK09952         26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3445678999999999988874 55555  66666 46654     3455677899999999999999999999999999


Q ss_pred             HHHHHhhhhhhhHH--------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286           77 TFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus        77 ~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                      +++++++++++|++        .+++.|+++|++.|..++....++.|++|+|+|++..+..+.+..+|.+++..+...+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        105 GIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987        5888999999999999999999999999999999999999999999999988776655


Q ss_pred             c--------CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhh
Q 012286          149 G--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  220 (466)
Q Consensus       149 ~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (466)
                      .        +.+|||++|++.+++.++.. ......||+++..+.+++.+                              
T Consensus       185 ~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~~~~~~~~~~------------------------------  233 (438)
T PRK09952        185 SMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAEFEQQQHEQA------------------------------  233 (438)
T ss_pred             HHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHHhhcc------------------------------
Confidence            4        35799999998877654322 11112233221100000000                              


Q ss_pred             hccccccccchhhhhhhhhhhHHhhhchhHHHHHHH-HHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhcc
Q 012286          221 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  298 (466)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  298 (466)
                      +.+++             ....+.++++|+.+...+ ..++.....+....|.|.|+++..+.+.... ....+..+..+
T Consensus       234 ~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~  300 (438)
T PRK09952        234 AAKKR-------------IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSC  300 (438)
T ss_pred             ccccc-------------CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            00000             001123445565555443 3444555666777899999988888775433 23334456667


Q ss_pred             ccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH---Hh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCc
Q 012286          299 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  374 (466)
Q Consensus       299 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (466)
                      ++.++.|+++||++||     +.+..+..+..+.......   .. ..+......++.+++.+...+.......|.+|++
T Consensus       301 i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~  375 (438)
T PRK09952        301 LTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS  375 (438)
T ss_pred             HHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            7888999999999998     5554444433332221111   11 2223333334445555555666677788889999


Q ss_pred             hhhHHHHHHHHHHHhhcccCccchhHHhhhcc-hhhHHHHHHHHHHHHHHHHHH
Q 012286          375 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       375 ~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      .|+++.|+.+.....+++.++|.+.+++.|.. ++|...+.....+.+++.+..
T Consensus       376 ~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~  429 (438)
T PRK09952        376 YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA  429 (438)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            99999999766655447788999999998865 346666665555554444443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=2.2e-35  Score=281.19  Aligned_cols=351  Identities=14%  Similarity=0.121  Sum_probs=240.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHH-HHHH-----HHHHhhhhhhhhhhcccCCchhhHhHHHHHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLS-SAFM-----VGLLVASPIFASLAKSHNPFRLIGVGLSVWTF   78 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~~-----~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~   78 (466)
                      ++.+..+++.+|...+++..|.+.+|++.++.+.+... +...     ++..+++++.|+++||+|||+.++.+.+++.+
T Consensus        19 ~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~   98 (434)
T PRK15075         19 RVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMAS   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence            45667889999999999999999999999888875443 3322     22346889999999999999999999999999


Q ss_pred             HHHhhhhhhhHH--------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc--
Q 012286           79 ATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV--  148 (466)
Q Consensus        79 ~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l--  148 (466)
                      ++++++++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.+++.+  
T Consensus        99 ~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~  178 (434)
T PRK15075         99 GTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQ  178 (434)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987        4688999999999999998999999999999999999999998888888888777665  


Q ss_pred             ------cCCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhc
Q 012286          149 ------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  222 (466)
Q Consensus       149 ------~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (466)
                            .+.+|||++|++..+..    +..++. ++.+     +|+++.... .                          
T Consensus       179 ~~~~~~~~~~gWr~~f~~~~~~~----~~~~~~-~~~~-----~e~~~~~~~-~--------------------------  221 (434)
T PRK15075        179 WLSPAQMAEWGWRIPFLIGCLIV----PFIFLI-RRSL-----EETEEFLAR-K--------------------------  221 (434)
T ss_pred             hCCHHHHhccchHHHHHHHHHHH----HHHHHH-HHhc-----CCCHHHHHh-h--------------------------
Confidence                  24679999999754322    111111 1111     111000000 0                          


Q ss_pred             cccccccchhhhhhhhhhhHHhhhchhHHHHH-HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhcccc
Q 012286          223 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVG  300 (466)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  300 (466)
                      +++        +.   .+.++...+++..+.. .+..++.....+....|.|.|+++..|.+..+. .......++++++
T Consensus       222 ~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~  290 (434)
T PRK15075        222 HRP--------SM---REIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIW  290 (434)
T ss_pred             hcc--------cc---ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            000        00   0112223344444333 233334455566778899999998888876544 4445667788899


Q ss_pred             chhhhhhHhhhcccccchhHHHHHHHHHHHHHHH-HH-HH-H-hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchh
Q 012286          301 TISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA-FC-L-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR  376 (466)
Q Consensus       301 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (466)
                      .++.|++.||++||     +.......+...... .. .. . ++.........+.+++.+...+.......|.+|++.|
T Consensus       291 ~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r  365 (434)
T PRK15075        291 LPIGGALSDRIGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVR  365 (434)
T ss_pred             HHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc
Confidence            99999999999998     554443333222111 11 11 1 1222222222333344444444455667888999999


Q ss_pred             hHHHHHHHHHHHhhcccCccchhHHhhhcchh
Q 012286          377 ALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  408 (466)
Q Consensus       377 ~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  408 (466)
                      +++.|+.+...+..++.++|.+.|++.|+.|.
T Consensus       366 g~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        366 TAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             chheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            99999976666654566789999999998873

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=5.1e-35  Score=277.00  Aligned_cols=352  Identities=12%  Similarity=0.021  Sum_probs=267.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      +.+..+...++...+.+.+|.+.+|+|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.+
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~   97 (406)
T PRK15402         18 LVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL   97 (406)
T ss_pred             HHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            34445555666777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      +++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..+||.+++.+.++.+||+.|++.++..
T Consensus        98 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~  177 (406)
T PRK15402         98 AQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA  177 (406)
T ss_pred             HccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence            99999999999999999998888899999999999999999999998888999999999999988889999999998888


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+..++..||+++..+  +  +                                          .+.++..++++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~--~--~------------------------------------------~~~~~~~~~~~~~  211 (406)
T PRK15402        178 ALSFFGLWRAMPETAGRVG--E--K------------------------------------------LSLKELGRDYKLV  211 (406)
T ss_pred             HHHHHHHHHhCCCCCcccc--c--c------------------------------------------ccHHHHHHHHHHH
Confidence            7776666555565321100  0  0                                          0001112356678


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +++|.++...+..++..........+.|.++++..+.++... .......++.+++.++.+++.||+++|     +.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----~~~~~  286 (406)
T PRK15402        212 LKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----SLIRM  286 (406)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHH
Confidence            889988887777666666566666778888888788876554 333344567788899999999999887     55544


Q ss_pred             HHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          325 ATFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       325 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      +..+..........     ..+.+.......+.+++.+...+....... ..+++++|++.+..+..... +..+|+.+.
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~  364 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSML-IFTVGIELS  364 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHH-HHHHHHHHH
Confidence            44433332222221     123344445555566666655555444332 33458999999999877776 888899999


Q ss_pred             HHhhhcchhhH
Q 012286          400 GVLQDHVNNWR  410 (466)
Q Consensus       400 g~l~~~~g~~~  410 (466)
                      +.+.+..+.+.
T Consensus       365 ~~l~~~~~~~~  375 (406)
T PRK15402        365 KHAYLGGGNGL  375 (406)
T ss_pred             HhcccCCchHH
Confidence            99999877544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3.7e-36  Score=291.46  Aligned_cols=392  Identities=15%  Similarity=0.097  Sum_probs=249.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccc--------cccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHH
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDF--------KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV   75 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~   75 (466)
                      +..++..+.++||...++...|.+++++        +.++.+.+++.+.+.++..++++++|+++||+|||++++++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l   94 (479)
T PRK10077         15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL   94 (479)
T ss_pred             HHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3455667889999999999989888877        88889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhh------------hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhh
Q 012286           76 WTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  143 (466)
Q Consensus        76 ~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  143 (466)
                      +.++.++++++            ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~  174 (479)
T PRK10077         95 FFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF  174 (479)
T ss_pred             HHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99998887763            335678899999999999999999999999999999999999999999999999887


Q ss_pred             hhhhcc--------CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccc
Q 012286          144 YGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  215 (466)
Q Consensus       144 ~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (466)
                      +++.+.        +..|||+.|++.+++.++..+. .+++||+++....+++.++..  ....+....   ++.++..+
T Consensus       175 ~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~--~~~~~~~~~---~~~~~~~~  248 (479)
T PRK10077        175 VNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAE--GILRKIMGN---TLATQALQ  248 (479)
T ss_pred             HHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHH--HHHHHHcCC---hhHHHHHH
Confidence            765443        4569999999988887776544 445677654311111100000  000000000   00000000


Q ss_pred             cchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH---HHHHHHHHHHHhhhhHhhhhhhhhhhccccchh-hHHHh
Q 012286          216 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV---NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGG  291 (466)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  291 (466)
                      +..              ...++..+..+..+.......   .....+......+...++.|.+.++ .+.+... .....
T Consensus       249 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~  313 (479)
T PRK10077        249 EIK--------------HSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTI  313 (479)
T ss_pred             HHH--------------HHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHH
Confidence            000              000000000001111000000   0111111222233445667777665 5555432 33444


Q ss_pred             hhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH--hhH--HHHHHHHHHHHHHHHhcC-ccceee
Q 012286          292 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSL--YGFLALFTVGELLVFATQ-APVNYV  366 (466)
Q Consensus       292 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~  366 (466)
                      ...+..+++.++.+++.||++||     +.+..+..+.++..+.....  .+.  .......++.+.+.+... +.....
T Consensus       314 ~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (479)
T PRK10077        314 IVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVL  388 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh-----HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHH
Confidence            56677888999999999999998     66655555544444333221  111  122222333333333333 445677


Q ss_pred             eecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh------hcchhhHHHHHHHHHHHHHH
Q 012286          367 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ------DHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       367 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~  423 (466)
                      +.|.+|+++|+++.|+.+...+. +.++++.+.+.+.      |..+ +...+++.+...+++
T Consensus       389 ~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  449 (479)
T PRK10077        389 LSEIFPNAIRGKALAIAVAAQWI-ANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLA  449 (479)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHH
Confidence            78888889999999999877777 7777766665444      4444 344555555443333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=254.82  Aligned_cols=370  Identities=15%  Similarity=0.121  Sum_probs=301.7

Q ss_pred             chhHHHHHHHHHHHHHH-HhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH
Q 012286            3 SMGVKELAMIKEYVLLV-AGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA   81 (466)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~   81 (466)
                      |+.++...+..+|..-. .+++.+.|.+|+|+|+.|.+++.++..+..++..++.|.+.||+|.|++..++.++..+-.+
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~   94 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCL   94 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence            56677777777775554 58899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhh---HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc---hh
Q 012286           82 GCGSSFD---FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WR  155 (466)
Q Consensus        82 ~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr  155 (466)
                      ..+++.+   ++++++.+.+.|++.+ .+.+....+++|+||+++|.++|++. ..|+|..+...++..+....+   ||
T Consensus        95 ~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~  172 (417)
T COG2223          95 GLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWR  172 (417)
T ss_pred             HHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHH
Confidence            9999854   4599999999999876 66779999999999999999999999 999999999999998888888   99


Q ss_pred             HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhh
Q 012286          156 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  235 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (466)
                      ....+..+..++..++.++...+.+..+...++..                                             
T Consensus       173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------------------------------  207 (417)
T COG2223         173 NVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------------------------------  207 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------------------------------
Confidence            99999999888888888887643222111000000                                             


Q ss_pred             hhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhccc
Q 012286          236 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                         ...++.++++++.|.+.+.++.....+.++..++|.|++++++.++... .+.......+.+.++++|+++||+|.+
T Consensus       208 ---~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~  284 (417)
T COG2223         208 ---PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR  284 (417)
T ss_pred             ---hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch
Confidence               0246678899999999999999999999999999999999999997665 666777788888999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHH
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  387 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (466)
                           +........+++........       .+...........+.+.+......+-.+...+ +++.|.+.|+.....
T Consensus       285 -----rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G  358 (417)
T COG2223         285 -----RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIG  358 (417)
T ss_pred             -----hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhc
Confidence                 55555555444444433332       34555666666677777888888888877766 457899999997776


Q ss_pred             HhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       388 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      ++ |+..-|...|...|.+|++...|+.+..+.+++......
T Consensus       359 ~l-GGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         359 GL-GGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             cc-cccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            66 878889999999999998988888888776666654443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.2e-35  Score=276.46  Aligned_cols=345  Identities=19%  Similarity=0.269  Sum_probs=264.9

Q ss_pred             HHHHHHHHHHHHHHhhhhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      .+..++..++...+.+..| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4667788888888899999 899999999999999999999999999999999999999999999999999999777777


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      ++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+||+.|++.+++.
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..++..++.++++++.+++++.+..                             +          +..++..+.++.+
T Consensus       162 ~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------------------~----------~~~~~~~~~~~~~  202 (352)
T PF07690_consen  162 LIAAILFILFLPEPPPPRERESPKESE-----------------------------S----------KKPKPLKPGFKSL  202 (352)
T ss_dssp             HHHHHHHHCCC---STTTT--SSTTTT-----------------------------------------HHHCCCH-CTHH
T ss_pred             hhhhhhHhhhhhhcccccccccccccc-----------------------------c----------ccccccccccccc
Confidence            888775555555433222111111100                             0          0000011125566


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc-chhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      +++|.+|...+..++..........+.|.|+++.++.+ .... .+..+..+.++++.++.+++.||++++     +...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~  277 (352)
T PF07690_consen  203 FKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----RRLL  277 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----HHHH
T ss_pred             cccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHH
Confidence            67777775555566666677778899999988888888 4444 445667788888899999999999886     3332


Q ss_pred             HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          324 AATFLGAISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       324 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                      .............   ...++.........+.+++.+...+.......+..|++++|++.|+.+...+. |..++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~igP  352 (352)
T PF07690_consen  278 IAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSL-GGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHCC
Confidence            2222222222222   22224455555667777888888888999999999999999999999877777 766655

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.4e-34  Score=273.65  Aligned_cols=357  Identities=13%  Similarity=0.075  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      +.+..++...+..+..+.+|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.
T Consensus        20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (399)
T PRK05122         20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL   99 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            455666777777777778886 6789999999999999999999999999999999999999999999999888877665


Q ss_pred             hh--------hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhH
Q 012286           85 SS--------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY  156 (466)
Q Consensus        85 ~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  156 (466)
                      ++        .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++.+.+..|||.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~  179 (399)
T PRK05122        100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG  179 (399)
T ss_pred             HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence            53        2577899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhh
Q 012286          157 AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS  236 (466)
Q Consensus       157 ~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (466)
                      .+++..+..++..+.. ...|+.+     +++++ .                                            
T Consensus       180 ~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~-~--------------------------------------------  208 (399)
T PRK05122        180 LGLLIMLLALLGLLLA-RPRPAVP-----PVKGE-R--------------------------------------------  208 (399)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCCCC-----CCCcc-c--------------------------------------------
Confidence            9887766544322211 1111100     00000 0                                            


Q ss_pred             hhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhccccc
Q 012286          237 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS  316 (466)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  316 (466)
                         .++++.++  ..+.......+..........+.|.|+++. +.+... .......++.+++.++.+++.||+++|  
T Consensus       209 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~--  279 (399)
T PRK05122        209 ---LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAAR-GWDGAA-LALTLFGVAFVGARLLFGNLINRLGGL--  279 (399)
T ss_pred             ---hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccch-HHHHHHHHHHHHHHHHHHHHHHHhccH--
Confidence               00111111  111112222233344455567778777653 443222 233456677788899999999999987  


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          317 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                         +.+..+..+...........++.+...+...+.+++.+...+.......+..|+++|+++.|+.+...+. |..++|
T Consensus       280 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~  355 (399)
T PRK05122        280 ---RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDL-SLGITG  355 (399)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence               5555555554444444444555555555666677777666666566667888889999999999877777 777788


Q ss_pred             chhHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 012286          397 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       397 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      .+.|.+.|..| |+..+...+.+.+++.+..
T Consensus       356 ~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~  385 (399)
T PRK05122        356 PLAGLVASWFG-YPSIFLAAALAALLGLALT  385 (399)
T ss_pred             HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence            89999999876 7777777666555544333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=9.1e-35  Score=277.31  Aligned_cols=385  Identities=13%  Similarity=0.066  Sum_probs=262.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh---
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---   86 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---   86 (466)
                      ......+...+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++.++.   
T Consensus        36 ~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  114 (438)
T TIGR00712        36 YAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA  114 (438)
T ss_pred             HHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc
Confidence            34444445555667787775 59999999999999999999999999999999999999999999999998887764   


Q ss_pred             -hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcchhHHHHHhHHH
Q 012286           87 -FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAIL  164 (466)
Q Consensus        87 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~  164 (466)
                       ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+... .+.+||+.|++.+++
T Consensus       115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~  194 (438)
T TIGR00712       115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAIC  194 (438)
T ss_pred             cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence             567788899999999999888989999999999999999999999999999999988776543 456899999999998


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHh
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  244 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (466)
                      +++..+..+++.||++++.+.++.++..          .+.. +   + ..++  .+  ++       .+.++.  ..+.
T Consensus       195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~---~-~~~~--~~--~~-------~~~~~~--~~~~  246 (438)
T TIGR00712       195 AIIVALFAFAMMRDTPQSCGLPPIEEYR----------NDYP-D---D-YNEK--AE--QE-------LTAKEI--FMQY  246 (438)
T ss_pred             HHHHHHHHHHhccCCHHhcCCCCchhcc----------cccc-c---c-cccc--cc--cc-------cchHHH--HHHH
Confidence            8887777777767644321111000000          0000 0   0 0000  00  00       000000  1224


Q ss_pred             hhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          245 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      +++++.++...+..++.....+++..|.|.|+++..+.++... ....+..+.++++.+++|++.||++++++   . ..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---~-~~  322 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR---G-AT  322 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---c-HH
Confidence            6788989888777777777777888999999999888776544 44456778889999999999999965431   1 21


Q ss_pred             HHHH--HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          324 AATF--LGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       324 ~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      ....  ............  .+.+......+..++..............+..|++.|+++.|+.+...+..|.+++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~  402 (438)
T TIGR00712       323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence            1111  111111111111  122222222222222211111111223557788899999999998777773456899999


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          400 GVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       400 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      |.+.|+.| |...+.+..++.+++.+..+
T Consensus       403 G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       403 GYTVDFFG-WDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             HHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence            99999887 77777776666555544444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7e-35  Score=283.71  Aligned_cols=392  Identities=11%  Similarity=0.100  Sum_probs=256.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+.+..+++++|....++..|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  103 (496)
T PRK03893         24 AAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG  103 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            45566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  164 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  164 (466)
                      +++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++..+.
T Consensus       104 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        104 FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875443


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccccccc---chhhhhhhhh-h
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES---RFLNQLSQFS-Q  240 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~  240 (466)
                      .++ .+......|+.++..+++++++ .              .++..+.................   .......... .
T Consensus       184 ~~~-~~~~~~~~p~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (496)
T PRK03893        184 IIF-ALWLRKNLPEAEDWKEKHAGKA-P--------------VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQN  247 (496)
T ss_pred             HHH-HHHHHHhCCCchhhhhhccccc-c--------------chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            222 2222222243221100000000 0              00000000000000000000000   0000000000 0


Q ss_pred             hH-----------------H--hhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhcccc
Q 012286          241 DT-----------------K--VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVG  300 (466)
Q Consensus       241 ~~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  300 (466)
                      .+                 .  ...+.+.........+...........++|.|+++..+.++.+. .+.....++.+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g  327 (496)
T PRK03893        248 AAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVG  327 (496)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            00                 0  00011111111111111111222355788999987788876554 5556777888999


Q ss_pred             chhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhH
Q 012286          301 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  378 (466)
Q Consensus       301 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
                      .++.|++.||+++|     +.+..+..+..+..+.....  .+.+.......+.++......+.......+.+|+++|++
T Consensus       328 ~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  402 (496)
T PRK03893        328 CCVGGFLGDWLGTR-----KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAA  402 (496)
T ss_pred             HHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhc
Confidence            99999999999988     55554444433333222222  122222222222222322334445566778888899999


Q ss_pred             HHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHH
Q 012286          379 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       379 ~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      ++|+.+...+. |..++|.+.|.+.|+.| +...+......
T Consensus       403 ~~~~~~~~~~~-g~~lgp~l~g~l~~~~g-~~~~~~~~~~~  441 (496)
T PRK03893        403 GLGFTYNVGAL-GGALAPILGALIAQRLD-LGTALASLSFS  441 (496)
T ss_pred             ccchhhhhhhH-HHHHHHHHHHHHhccCC-hHHHHHHHHHH
Confidence            99999877776 88899999999999887 66555444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=4.4e-34  Score=265.06  Aligned_cols=365  Identities=13%  Similarity=0.039  Sum_probs=273.7

Q ss_pred             chhHHHHHHHHHH-HHHHHhhhhhcccc-cccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH
Q 012286            3 SMGVKELAMIKEY-VLLVAGFIHGSCRG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT   80 (466)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~   80 (466)
                      |+.++.+++.-+| .....+++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~  114 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC  114 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            3455666666655 44556888888876 899999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh-----hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc------
Q 012286           81 AGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG------  149 (466)
Q Consensus        81 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------  149 (466)
                      ++.+++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.      
T Consensus       115 ~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~  193 (462)
T PRK15034        115 VWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFA  193 (462)
T ss_pred             HHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999987     8999999999999998 6688899999999999999999999997777777766655543322      


Q ss_pred             ------------CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccc
Q 012286          150 ------------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  217 (466)
Q Consensus       150 ------------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (466)
                                  +..+||.++++..++.++..++.+++.++.+.      + +..                         
T Consensus       194 ~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------~-~~~-------------------------  241 (462)
T PRK15034        194 FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------S-RAS-------------------------  241 (462)
T ss_pred             HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------c-ccC-------------------------
Confidence                        13458999989988888777777776433110      0 000                         


Q ss_pred             hhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhc
Q 012286          218 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCG  297 (466)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (466)
                                           .++.++.+|+|+.|...+.+++.+..+.++..++|.|.++.+.... ......+..+..
T Consensus       242 ---------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~-~l~~~~l~~l~~  299 (462)
T PRK15034        242 ---------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVN-ILRLAFFGPFIG  299 (462)
T ss_pred             ---------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH-HHHHHHHHHHHH
Confidence                                 1245678899999999999999988898999999999988663221 112233445777


Q ss_pred             cccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH-HHHHh-----hHHHHHHHHHHHHHHHHhcCccceeeeeccc
Q 012286          298 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSV  371 (466)
Q Consensus       298 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (466)
                      .+.++++|+++||+|++     +.+..+.....+.... ....+     +.+...+......+..+......+-++.+.+
T Consensus       300 ~l~rplgG~LADRiG~~-----~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f  374 (462)
T PRK15034        300 AIARSVGGAISDKFGGV-----RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIF  374 (462)
T ss_pred             HHHHHhhHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHH
Confidence            88899999999999998     5555554433333221 11121     3344444444455666666666776766666


Q ss_pred             CC---------------------chhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          372 KP---------------------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       372 ~~---------------------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      |+                     ++.|.+.|+....... |+.+-|.+.|...+.+|++...++.+.+..+++..+.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~-Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        375 RQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV-GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             hhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc-ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            53                     1577888988766666 88888999999999999998888887777666555444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=7.6e-35  Score=276.69  Aligned_cols=358  Identities=11%  Similarity=-0.003  Sum_probs=263.5

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh---
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---   85 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---   85 (466)
                      ..++..+......+..|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..+.   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34556666667788889999999999999999999999999999999999999999999999998888877665542   


Q ss_pred             --hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           86 --SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        86 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                        .++++.+++.|++.|++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+.+..+||+.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence              567899999999999999988888999999999999999999999999999999999999999888899999998887


Q ss_pred             HHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHH
Q 012286          164 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  243 (466)
Q Consensus       164 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (466)
                      ..++..++. +..|+.++..    +++.                                         +..++..+.++
T Consensus       185 ~~~~~~~~~-~~l~~~~~~~----~~~~-----------------------------------------~~~~~~~~~~~  218 (417)
T PRK10489        185 GTFITLLPL-LRLPALPPPP----QPRE-----------------------------------------HPLRSLLAGFR  218 (417)
T ss_pred             HHHHHHHHH-HhCCCCCCCC----cccc-----------------------------------------cchHHHHHHHH
Confidence            766554443 3335422110    0000                                         00011122455


Q ss_pred             hhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHH
Q 012286          244 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL  322 (466)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  322 (466)
                      .++++|.++...+..++... ......+.|.|.++..|.++... .+.....++.+++.++.+++.||.+++     +.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l  292 (417)
T PRK10489        219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLM  292 (417)
T ss_pred             HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHH
Confidence            66777777665554443332 34567788999998788776544 444566778888889999998885554     444


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          323 SAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      ..+..+.....+.....++.+...+..++.+++.+...+.......+..|++.||+++|+.+...+. |..++|.+.|.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~l~G~l  371 (417)
T PRK10489        293 LLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT-GDAIGAALLGGL  371 (417)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh-hHhHHHHHHHHH
Confidence            4444444444444444445555555555666666555555566777888889999999999877776 999999999999


Q ss_pred             hhcchhhHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIF  420 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~  420 (466)
                      .|..| +...+...+.+.
T Consensus       372 ~~~~g-~~~~~~~~~~~~  388 (417)
T PRK10489        372 GAMMT-PVASASASGFGL  388 (417)
T ss_pred             HHHhc-hhhHHHHHHHHH
Confidence            99877 444555444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=3e-35  Score=285.76  Aligned_cols=383  Identities=14%  Similarity=0.143  Sum_probs=287.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      ..+.+..++..+|....++..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                      ++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.+||+.|++.+.
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~  164 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP  164 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhccccccCCCCCccccccccc-------cccccccccCCCCcccc-ccccc-----------hhhhccc
Q 012286          164 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA-------SVSEGSEASNLNDHVSE-DISDQ-----------ASERSIK  224 (466)
Q Consensus       164 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~  224 (466)
                      ++++..++.++..|++++..  .++.+.....       ......+..+..+...+ .....           ...+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (485)
T TIGR00711       165 IGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD  242 (485)
T ss_pred             HHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88877777766666532211  0110000000       00000000000000000 00000           0000000


Q ss_pred             cccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchh
Q 012286          225 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS  303 (466)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  303 (466)
                      +           +...+ .+++++|.++...+..++.....+....+.|.|+++..+.++.+. .......++.+++.++
T Consensus       243 ~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~  310 (485)
T TIGR00711       243 D-----------NPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPI  310 (485)
T ss_pred             C-----------CCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0           00011 256788888888888788888888888899999999888887555 4445667888899999


Q ss_pred             hhhhHhhhcccccchhHHHHHHHHHHHHHHHHHH-HH---hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHH
Q 012286          304 GGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  379 (466)
Q Consensus       304 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (466)
                      .|++.||+++|     +.+..+..+......... ..   .+.+.......+.+++.+...++......+.+|+++++++
T Consensus       311 ~g~l~~r~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~  385 (485)
T TIGR00711       311 AGRMGDKIDPR-----KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARG  385 (485)
T ss_pred             HHHHHhhcCcH-----HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHH
Confidence            99999999988     655555544444444333 11   2334444455666777776666666777788899999999


Q ss_pred             HHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          380 MAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       380 ~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      .|+.+...+. |..+|+.+.|.+.++.
T Consensus       386 ~~~~~~~~~~-g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQL-GGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999888777 8888999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.4e-34  Score=279.57  Aligned_cols=384  Identities=12%  Similarity=0.082  Sum_probs=276.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+++..+++.++...+++..|.+.+|+|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   93 (471)
T PRK10504         14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA   93 (471)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  164 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  164 (466)
                      ++++++.+++.|+++|++.+...|...+++.|++|+++|+++.++.....++|..+||.+++.+.++.|||+.|.+....
T Consensus        94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~  173 (471)
T PRK10504         94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV  173 (471)
T ss_pred             HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccc------c-ccccccCCCCccccccccc---------hhhhccccccc
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV------S-EGSEASNLNDHVSEDISDQ---------ASERSIKSIGE  228 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  228 (466)
                      ..+..+......|+.+....   +.+.......      . ...+..+............         ....+++..  
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  248 (471)
T PRK10504        174 GIIGAIATLMLMPNYTMQTR---RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN--  248 (471)
T ss_pred             HHHHHHHHHHhCCCccccCC---CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            77666666555554321110   0000000000      0 0000000000000000000         000000000  


Q ss_pred             cchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhh
Q 012286          229 SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFI  307 (466)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l  307 (466)
                             .+...+. ++++||.++......++..........+.|.|++...+.++... .......++.+++.++.+++
T Consensus       249 -------~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  320 (471)
T PRK10504        249 -------NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV  320 (471)
T ss_pred             -------CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0001122 47788998888877777777776777788999988778776544 33344556666777889999


Q ss_pred             HhhhcccccchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHH
Q 012286          308 LDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  384 (466)
Q Consensus       308 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  384 (466)
                      .||+++|     +.+..+..+..+...+....   ++.+.......+.+.+.+...++......+.+|++.++.++|+.+
T Consensus       321 ~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  395 (471)
T PRK10504        321 VNRFGYR-----RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS  395 (471)
T ss_pred             HHHcCch-----HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence            9999988     66655555444433333222   222222333444556666666667777778889999999999998


Q ss_pred             HHHHhhcccCccchhHHhhhcch
Q 012286          385 VSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       385 ~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      ...+. |..+|+.+.|.+.+..|
T Consensus       396 ~~~~~-g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        396 MIMQL-SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhh
Confidence            77777 88999999999988765

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.5e-34  Score=271.06  Aligned_cols=346  Identities=16%  Similarity=0.153  Sum_probs=263.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      +....++...+...+.+..|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   89 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL   89 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            34445666777778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      +++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++..
T Consensus        90 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  169 (385)
T TIGR00710        90 SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAG  169 (385)
T ss_pred             HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999998887


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+..++..||+++..++    + .                                          .++..+.+++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~----~-~------------------------------------------~~~~~~~~~~~  202 (385)
T TIGR00710       170 ILLSALIFFILPETLPYEAR----I-Q------------------------------------------ISTYFETFLLL  202 (385)
T ss_pred             HHHHHHHHHhCCCCCCCccc----C-C------------------------------------------HHHHHHHHHHH
Confidence            77777666665553211000    0 0                                          00012245667


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +++|.++...+..............+.|.++++.++.++... .+.....++.+++.++.+++.||+++|     +.+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~  277 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRM  277 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHH
Confidence            788888887777666666677777888999988888876554 444566788889999999999999987     44433


Q ss_pred             HHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          325 ATFLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      ...+...........     ...........+.+++.+...+.......+..| +.++++.++.+...+..|.+.+| +.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~  355 (385)
T TIGR00710       278 GLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LV  355 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HH
Confidence            333333222222211     122233333444555556555655566566654 67999999998887775666555 55


Q ss_pred             HHhhhc
Q 012286          400 GVLQDH  405 (466)
Q Consensus       400 g~l~~~  405 (466)
                      +.+.+.
T Consensus       356 ~~~~~~  361 (385)
T TIGR00710       356 SLIHGN  361 (385)
T ss_pred             Hhcccc
Confidence            555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.5e-34  Score=268.98  Aligned_cols=362  Identities=10%  Similarity=0.055  Sum_probs=261.1

Q ss_pred             HHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHh-HHHHHHHHHHhhhh
Q 012286            8 ELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGS   85 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~   85 (466)
                      +.+++.++......+.+|. +++++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            4567777777777777775 678999999999999999999999999999999999999887654 56666777888899


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhH--HHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                      ++|++.+++.|++.|.+.+...|...++..|+.|+++|++.  .+....+.++|.++||.+++.+.+..+||+.|++.++
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            99999999999999988888888888999999888777654  5788888999999999999999998999999999998


Q ss_pred             HHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHH
Q 012286          164 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  243 (466)
Q Consensus       164 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (466)
                      +.++..++.++..||.+++.+  ++.+ .                                               .+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~-----------------------------------------------~~~~  193 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYPRGAP--GALT-R-----------------------------------------------LEVR  193 (375)
T ss_pred             HHHHHHHHHHHhCCCcccCcc--cccC-c-----------------------------------------------chhh
Confidence            877777777766676432110  0000 0                                               0112


Q ss_pred             hhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHH
Q 012286          244 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL  322 (466)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  322 (466)
                      +.++++.++...+..++..........+.|.++++..+.++... ..........+++.++.+++.||+++|     +.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~  268 (375)
T TIGR00899       194 GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLM  268 (375)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHH
Confidence            23455555554444444444444556678888888888876544 333344455667788999999999988     555


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          323 SAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      .................++.+.......+.+++.+...+.......+.. |++++++.++.+...+. |..++|.+.|.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~g~~~~g~~  346 (375)
T TIGR00899       269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLYTNTGRV-GWIIAGSVGGIL  346 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4444444333333333445555555555556655555555555555555 45677999999887776 889999999999


Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      .|..| |+..+...+.+.+++..+.
T Consensus       347 ~~~~g-~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       347 AERWS-YHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHhcc-chhHHHHHHHHHHHHHHHH
Confidence            99876 7777776666555444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=5.3e-34  Score=269.15  Aligned_cols=346  Identities=10%  Similarity=0.011  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD   88 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~   88 (466)
                      ..+....+...+.+.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||++++.+.++++++++++++++|
T Consensus        24 ~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~  103 (413)
T PRK15403         24 YDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS  103 (413)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC
Confidence            34444556677788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      ++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.++.|||+.|++.+++.++.
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~  183 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99999999999999987777778899999999999999999999999999999999999998889999999999888877


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  248 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (466)
                      .+..++..||+++..   ++ + .                                         ..++..+++++++++
T Consensus       184 ~~~~~~~lp~~~~~~---~~-~-~-----------------------------------------~~~~~~~~~~~ll~~  217 (413)
T PRK15403        184 FVGLLLAMPETVKRG---AV-P-F-----------------------------------------SAKSVLRDFRNVFRN  217 (413)
T ss_pred             HHHHHHhCCCCcccc---CC-C-C-----------------------------------------ChHHHHHHHHHHHcC
Confidence            666555567643210   00 0 0                                         000112356788899


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHH-HhhhhhhccccchhhhhhHhhhcccccchhHHHHHH--
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA--  325 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~--  325 (466)
                      |.++...+...+.......+..+.|.++++.++.++....+ ......+..++..+.+.+.++..+++    ......  
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~~~  293 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR----FIWRAVPI  293 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHH
Confidence            99999888877777777778888999999988888665533 23344555555566665543332221    211111  


Q ss_pred             HHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          326 TFLGAISCLTA--FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       326 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      ...+.......  ...++.+......++.+++.+...+........ -.+..+|++.++.+..... +...++...|++.
T Consensus       294 ~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~-~~~~~~~~~g~~~  371 (413)
T PRK15403        294 QLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILM-VMAVSVEIGRWLW  371 (413)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            11111111111  112222223445555666666665555532211 1123478888888777666 5566787888887


Q ss_pred             hcc
Q 012286          404 DHV  406 (466)
Q Consensus       404 ~~~  406 (466)
                      ++.
T Consensus       372 ~~~  374 (413)
T PRK15403        372 FNG  374 (413)
T ss_pred             HcC
Confidence            763

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=7e-35  Score=284.10  Aligned_cols=377  Identities=14%  Similarity=0.112  Sum_probs=256.1

Q ss_pred             hhhhccccccccc---ccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012286           22 FIHGSCRGDFKLN---NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   98 (466)
Q Consensus        22 ~~~~~i~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   98 (466)
                      +..|.+.+|+|++   +.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678899999999   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. +++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            9999999999999999999999999999999999999999999998876653   9999999998887766655 55688


Q ss_pred             cccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHH
Q 012286          179 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  258 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (466)
                      ++++...+++.+...+  ..++..+.+......+..+...+++..++           ....++++++++|.++...+..
T Consensus       266 sp~~l~~~~~~~~a~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~  332 (505)
T TIGR00898       266 SPRWLISQGRIEEALK--ILQRIAKINGKKLPAEVLSLSLEKDLSSS-----------KKQYSFLDLFRTPNLRKTTLCL  332 (505)
T ss_pred             ChHHHHHCCCHHHHHH--HHHHHHHHcCCCCCHHHHhhhhhhhhhhc-----------cCCCcHHHHhCChHHHHHHHHH
Confidence            7654221111111000  00000000000000000000000000000           0012466788888877766555


Q ss_pred             HHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH
Q 012286          259 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  338 (466)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
                      ....+......+..+.+..+ .+.+  ......+..+..+++.++.+++.||+|||     +.+.....+..+.++....
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~  404 (505)
T TIGR00898       333 MMLWFTTAFSYYGLVLDLGN-LGGN--IYLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLF  404 (505)
T ss_pred             HHHHHHHHHHHHHHhccccc-cCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHH
Confidence            44433332222222222222 2333  12223345677788899999999999998     6666665555555444443


Q ss_pred             HhhH--HHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHH
Q 012286          339 LSSL--YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  416 (466)
Q Consensus       339 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  416 (466)
                      .++.  +......++.+++....++..+.+..|.+|++.|+++.|+.+....+ |.+++|.+.+ +.+ .+ +...+.+.
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~p~i~~-~~~-~~-~~~~~~~~  480 (505)
T TIGR00898       405 VPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV-GSIISPFLVY-LGE-KW-LFLPLVLF  480 (505)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHH-HHHHHhHHHH-HHH-HH-HhhHHHHH
Confidence            3322  34444445555555566666777888999999999999999888777 8899998888 443 23 33455555


Q ss_pred             HHHHHHHHHHH
Q 012286          417 TSIFFLAAGIW  427 (466)
Q Consensus       417 ~~~~~~~~~~~  427 (466)
                      ++..+++.++.
T Consensus       481 ~~~~~~~~~~~  491 (505)
T TIGR00898       481 GGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHH
Confidence            55444444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=5.8e-35  Score=283.82  Aligned_cols=404  Identities=14%  Similarity=0.126  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccccccc--------ccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLN--------NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT   77 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~   77 (466)
                      +.+..+.+++|...++...|.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++..+.+++.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~  112 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFV  112 (481)
T ss_pred             HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHH
Confidence            44455677888888999999998888877        7899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh---hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhh---hhccCC
Q 012286           78 FATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG---GVVGSH  151 (466)
Q Consensus        78 ~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~---~~l~~~  151 (466)
                      ++.+++.++   .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++   ....+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  192 (481)
T TIGR00879       113 IGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT  192 (481)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999998554   45568999999999999999999999999999999999999999999999999999999   777778


Q ss_pred             cchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhh-hccccccccc
Q 012286          152 LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE-RSIKSIGESR  230 (466)
Q Consensus       152 ~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  230 (466)
                      .+||+.|++.++..++.. +..++.||+++....+++.+...+  ...+....+   +.+....+.... ...+....  
T Consensus       193 ~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--  264 (481)
T TIGR00879       193 LGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARK--SLARLRGTS---GEDKELLDELELIDIKRSIEK--  264 (481)
T ss_pred             ccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHH--HHHHHhCCC---CCcHHHHHHHHHHHHHHHHHH--
Confidence            899999999766555444 344455765432111111110000  000000000   000000000000 00000000  


Q ss_pred             hhhhhhhhhhhHHhhh---chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhh
Q 012286          231 FLNQLSQFSQDTKVLL---QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF  306 (466)
Q Consensus       231 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  306 (466)
                        +..+..+....+..   +.+.++...+..+...........+.|.+.++ .+.+.... .......++.+++.++.++
T Consensus       265 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~  341 (481)
T TIGR00879       265 --RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIF  341 (481)
T ss_pred             --hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000011222222   23444444444444444455566777777665 56654333 4556667888899999999


Q ss_pred             hHhhhcccccchhHHHHHHHHHHHHHHHHHHH-----Hhh-----HHHHHHHHHHHHHHHHhcCccc-eeeeecccCCch
Q 012286          307 ILDQMGATISNAFKLLSAATFLGAISCLTAFC-----LSS-----LYGFLALFTVGELLVFATQAPV-NYVCLHSVKPSL  375 (466)
Q Consensus       307 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  375 (466)
                      +.||++||     +.+..+..+..+..+....     .+.     .+.......+...+.+....+. .....+.+|++.
T Consensus       342 l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  416 (481)
T TIGR00879       342 LVDRFGRR-----PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL  416 (481)
T ss_pred             HHHHhcch-----HHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH
Confidence            99999988     5554444444433333221     110     2223333333334444433333 445577788899


Q ss_pred             hhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 012286          376 RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       376 ~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      |+++.|+.+...++ |.+++|.+.+.+.++.+ +...|++.+++.+++.++.
T Consensus       417 ~~~~~~~~~~~~~l-g~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       417 RPKGISIAVAANWL-ANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHH
Confidence            99999999888777 88889999999998766 6666666665544444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.2e-33  Score=266.42  Aligned_cols=339  Identities=15%  Similarity=0.062  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD   88 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~   88 (466)
                      ..+.+......+.+.+|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++..++|
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            34444445555567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      ++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.++++++.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence            99999999999999999899999999999999999999999999999999999999999888889999999999888877


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  248 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (466)
                      .++.++..||+++..    +++..                                            +..+..++.+++
T Consensus       171 ~~~~~~~~~~~~~~~----~~~~~--------------------------------------------~~~~~~~~~~~~  202 (392)
T PRK10473        171 LLLSLFILKETRPAR----APAAS--------------------------------------------SKPRENSESLLN  202 (392)
T ss_pred             HHHHHHHcCCCCCcc----cCCcc--------------------------------------------chHHHHHHHHhC
Confidence            777666666532110    00000                                            000123345667


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      +.++...+...+.......+..+.|.++++..|.++... .......++.+++.++.+++.||+++|     +....+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~  277 (392)
T PRK10473        203 RFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHH
Confidence            766655554444444444556677888888888876544 344566788889999999999999988     55555554


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchh-hHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      +...........+..+.......+...+.+...+....  .+..|.++| +.+.++.    .. +..+++.+.+++.+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~g~~~~~~----~~-~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        278 LFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAMS--QALGPFSLRAGVASSTL----GI-AQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHhccCcccccHHHHHH----HH-HHHHHHHHHHHHHHHh
Confidence            44444443333333333333333333333332222221  222333333 3444333    33 5555677788888776


Q ss_pred             h
Q 012286          407 N  407 (466)
Q Consensus       407 g  407 (466)
                      |
T Consensus       351 g  351 (392)
T PRK10473        351 G  351 (392)
T ss_pred             c
Confidence            6

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.4e-33  Score=267.54  Aligned_cols=355  Identities=17%  Similarity=0.196  Sum_probs=263.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh--
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC--   83 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~--   83 (466)
                      +.++.++.+++....++..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++  
T Consensus        31 ~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~  110 (438)
T PRK10133         31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP  110 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            456677889999999999999999999999999999999999999999999999999999999999999999999886  


Q ss_pred             -hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-C-----------
Q 012286           84 -GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-S-----------  150 (466)
Q Consensus        84 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~-----------  150 (466)
                       .++++++.++++|+++|+|.|...+....++.|+.|+++|.+.+++.+..+.+|..+|+.+++.+. .           
T Consensus       111 ~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~  190 (438)
T PRK10133        111 AAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhh
Confidence             468899999999999999999999999999999887777777899999999999999999876543 0           


Q ss_pred             ------C--------cchhHHHHHhHHHHHHHHHHH-HhhccccccCCCCCccccccccccccccccccCCCCccccccc
Q 012286          151 ------H--------LNWRYAFWGEAILMLPFAVLA-FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  215 (466)
Q Consensus       151 ------~--------~gwr~~f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (466)
                            .        .+||++|+....+..+..++. ....||.+.     ++++..                       
T Consensus       191 ~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~-----------------------  242 (438)
T PRK10133        191 KMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA-----------------------  242 (438)
T ss_pred             ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc-----------------------
Confidence                  0        256666764443322222222 221232110     000000                       


Q ss_pred             cchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhh-hhhccccchhh-HHHhhh
Q 012286          216 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG-YNIYHMSNADM-MFGGVT  293 (466)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~  293 (466)
                                        +..+..++.++++++|.++...+..++......+...|.+.|+ ++..|.++... ......
T Consensus       243 ------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~  304 (438)
T PRK10133        243 ------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT  304 (438)
T ss_pred             ------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence                              0000112455778889888777777777777777777888885 56678887655 444677


Q ss_pred             hhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCC
Q 012286          294 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  373 (466)
Q Consensus       294 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (466)
                      .++.++++++++++.||+++|     +.+..+..+.+..+++....++. .....+.+.+++.+..+|..++...+..++
T Consensus       305 ~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~  378 (438)
T PRK10133        305 MVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ  378 (438)
T ss_pred             HHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            788899999999999999998     66655555554444443333332 234556678888889999999888887654


Q ss_pred             chhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHH
Q 012286          374 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  415 (466)
Q Consensus       374 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  415 (466)
                       +.+++.++.. .... |+.++|.+.|.+.|..|+.+..+++
T Consensus       379 -~~~~as~l~~-~~~~-g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        379 -DTKYGSSFIV-MTII-GGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             -hhccchhHHh-HHhc-cchHHHHHHHHHHHhccchHHHHHH
Confidence             4677888774 3344 7788899999999987644455544

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.5e-34  Score=273.80  Aligned_cols=374  Identities=17%  Similarity=0.205  Sum_probs=268.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .+..+.++++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  102 (398)
T TIGR00895        23 FLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA  102 (398)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            34556778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  166 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  166 (466)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+||+.|++.++..+
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  182 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPL  182 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhh
Q 012286          167 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  246 (466)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (466)
                      +..++.+...||+++...++++++..   +..++...... ++.++...+    ++.+.       +..++..+..++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~  247 (398)
T TIGR00895       183 LLLLLLMRFLPESIDFLVSKRPETVR---RIVNAIAPQMQ-AEAQSALPE----QKATQ-------GTKRSVFKALFQGK  247 (398)
T ss_pred             HHHHHHHHhCCCCChHHHhcCHHHHH---HHHHHHHHhcc-ccccccccc----ccccc-------chhhHHHHHHhcch
Confidence            77666666667654321111000000   00000000000 000000000    00000       00011111111111


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHH
Q 012286          247 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  325 (466)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  325 (466)
                      +.+..+...+..++..........+.| ++.+..+.++... .......++.+++.++.+++.||+++|     +.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~  321 (398)
T TIGR00895       248 TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-----VTALLL  321 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHH
Confidence            223334444444555556666777888 4444566665443 455667788899999999999999887     444444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          326 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      .........+.....+.+......++.+++.+...+.......+.+|+++|+++.|+.+...+. |..++|.+.|++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~G~l  397 (398)
T TIGR00895       322 LLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRL-GAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHhHHhc
Confidence            3333333333333445555666667777777777788888889999999999999999888777 888899888875

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1.4e-33  Score=265.38  Aligned_cols=341  Identities=14%  Similarity=0.094  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHh-hhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh
Q 012286           10 AMIKEYVLLVAG-FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD   88 (466)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~   88 (466)
                      +++......... +..+.+++++|.|+.+.|++.+.+.+...+.+++.|+++||+|||+++..+.++..++.+++.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~   98 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE   98 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            334444444433 3444578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      ++.+++.|+++|++.+...|...+++.|++|+++|++++++.....++|..+||.+++.+. ..+||+.|++.++..++.
T Consensus        99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~  177 (400)
T PRK11646         99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            9999999999999999888999999999999999999999999999999999999999998 679999999998877766


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  248 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (466)
                      .++..+..||...      +++..                                            +..+++++++++
T Consensus       178 ~i~~~~~~~~~~~------~~~~~--------------------------------------------~~~~~~~~~~~~  207 (400)
T PRK11646        178 AAFNAWLLPAYKL------STVRT--------------------------------------------PVREGMTRVLRD  207 (400)
T ss_pred             HHHHHHhCCcccc------cccch--------------------------------------------hhHHHHHHHHcC
Confidence            6555555453110      00000                                            001235567778


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhh-hcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~  327 (466)
                      |.++...+..+...........+.|.|.++..+.+.......+...+....+....+++.|| .+.+     +.+..+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~  282 (400)
T PRK11646        208 KRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLL  282 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHH
Confidence            87776555544444333344567899988876643322233334444444444444555544 4333     33333333


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +..+........++.+.......+.+.+.+...++......+..|+++||++.|+.+...+. |..+||.+.|.+.|+.+
T Consensus       283 ~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        283 IMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAL-GGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHH-HHHhcccchHHHHHHHh
Confidence            33333333334444444444445556666666677778888889999999999999877777 99999999999999864

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.5e-33  Score=267.64  Aligned_cols=365  Identities=13%  Similarity=0.115  Sum_probs=267.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccc-----hhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHh
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGDFKLNNFQ-----DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG   82 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~   82 (466)
                      +..++.+.......+.+|.+.+++|.+..+     .|++.+++.++..++++++|+++||+|||+++..+.++..++.++
T Consensus        21 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  100 (408)
T PRK09874         21 LGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL  100 (408)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence            345566666677788899999999998765     388899999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhH
Q 012286           83 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  162 (466)
Q Consensus        83 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  162 (466)
                      +.++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  179 (408)
T PRK09874        101 MGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA  179 (408)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            9999999999999999999865 567788899999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      ++.++..+..++..||..+..   ++++..                                         +    .++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------------------------~----~~~~  211 (408)
T PRK09874        180 SVLFLCFLVTLFCIRENFQPV---SKKEML-----------------------------------------H----MREV  211 (408)
T ss_pred             HHHHHHHHHHHHHhccCcccc---cchhhh-----------------------------------------H----HHHH
Confidence            887777766666655432110   000000                                         0    0011


Q ss_pred             HhhhchhHHHHHH-HHHHHHHHHhhhhHhhhhhhhhhhccccchh----hHHHhhhhhhccccchhhhhhHhhhcccccc
Q 012286          243 KVLLQEKVYVVNV-LGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD----MMFGGVTIVCGIVGTISGGFILDQMGATISN  317 (466)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  317 (466)
                      .+.+++++++... ...............+.|.|..+..+.....    ..+..+..++.+++.+..|++.||++||   
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~---  288 (408)
T PRK09874        212 VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE---  288 (408)
T ss_pred             HHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            2334555554422 2233333444455566777777754432211    1223445567778888899999999988   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccc
Q 012286          318 AFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  397 (466)
                        +.+.....+.....+.....++.+...+...+.+++.+...+.......+..+++++|+..++.+...+. |..++|.
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~gp~  365 (408)
T PRK09874        289 --KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDI-GNVTGPL  365 (408)
T ss_pred             --hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHH-HHHhhHH
Confidence              5555555544444444444445555555556667777766666666777778889999999999877777 8999999


Q ss_pred             hhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          398 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       398 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +.|.+.+..| |...|...+++.+++.+...
T Consensus       366 ~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        366 MGAAISANYG-FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence            9999999876 87788877766555554443

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=4.4e-33  Score=262.84  Aligned_cols=353  Identities=12%  Similarity=0.133  Sum_probs=250.3

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh---h-hhhHHHHHHHHHH
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRML   98 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l   98 (466)
                      ..|.+.+|+|.|+++.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++++++.   . .++++.+++.|++
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            34555688999999999999999999999999999999999999999999999998877653   3 3578889999999


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhh-hhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhcc
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  177 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  177 (466)
                      .|++.+...+...+.+.+++|+++|++++|+.+.+.++|. +++|.+++.+.+..||+..++......++..++.+++.+
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999988888888899999999999999999999999997 689999999998889776666554443333333344333


Q ss_pred             ccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHH
Q 012286          178 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  257 (466)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (466)
                      +.++    +++.+..                                        .+.++..+.++.++++|.++...+.
T Consensus       195 ~~~~----~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  230 (402)
T TIGR00897       195 DIFT----PQHMQTR----------------------------------------EKFSELGKAATILFTNPNVLLGGMV  230 (402)
T ss_pred             CCCC----cccccCC----------------------------------------cchhhHHHHHHHHHcChhHHHHHHH
Confidence            2110    0000000                                        0000111245677889999888877


Q ss_pred             HHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHH-HHH
Q 012286          258 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLT  335 (466)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~  335 (466)
                      .++.....++..++.|.|.++ .+.++.+. .......+++.++.+..|++.||++||+    ...........+. ..+
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~----~~~~~~~l~~~~~~~~l  305 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN----TVRWFGGVGCGIFTLAL  305 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHH
Confidence            777777788888999999866 67775554 4445667888999999999999999873    2212221111111 111


Q ss_pred             HHH----HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHH
Q 012286          336 AFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  411 (466)
Q Consensus       336 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  411 (466)
                      ...    .++.+.......+.+++.+... +..... .+.+|++|+++.|+.+...+. |..++|.+.|.+.|..| +..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~g-~~~  381 (402)
T TIGR00897       306 YYIPQHFGHSFAVALIIAIALGIFLAGYV-PLAAVF-PTLAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLFIGFFG-AIG  381 (402)
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHH-HHHHHH-HhhCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-hHH
Confidence            111    1233444444555555554432 233333 346678999999999888887 88889999999999887 656


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 012286          412 TTLALTSIFFLAAGIWF  428 (466)
Q Consensus       412 ~~~~~~~~~~~~~~~~~  428 (466)
                      .++..+++.+++.++..
T Consensus       382 ~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       382 VVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67766666555554444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=263.90  Aligned_cols=352  Identities=16%  Similarity=0.176  Sum_probs=252.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+.+..++.+.+.....+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~   89 (381)
T PRK03633         10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG   89 (381)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  164 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  164 (466)
                      +++|++.+++.|+++|++.+...|...+.+.+..++++|++++++++.+.++|..+||.+++.+.+...|+..+. .+..
T Consensus        90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~  168 (381)
T PRK03633         90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLV  168 (381)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHH
Confidence            999999999999999999999888888888899999999999999999999999999999999877543333332 2222


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHh
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  244 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (466)
                      ..... ...+. +..++   ++++++                                                .++.++
T Consensus       169 ~~~~~-~~~~~-~~~~~---~~~~~~------------------------------------------------~~~~~~  195 (381)
T PRK03633        169 LAAIL-PLLFT-RILNQ---QAENHD------------------------------------------------STSIWP  195 (381)
T ss_pred             HHHHH-HHHHh-cccCC---CCCCCC------------------------------------------------CCCHHH
Confidence            11111 11111 11000   000000                                                012334


Q ss_pred             hhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          245 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      .+++|.++......+...........+.|.|.++ .+.++... .+.+...++.+++.+..+++.||+++|     +.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----~~l~  269 (381)
T PRK03633        196 MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL-----LVLR  269 (381)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----HHHH
Confidence            5666766654444444444555566788998877 46664443 444566788889999999999999988     5555


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          324 AATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      .+.....+......  .. ........+.+.+.....|.......+..|+++++...+..+...+. |..++|.+.|++.
T Consensus       270 ~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~igp~~~G~l~  345 (381)
T PRK03633        270 VQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTV-GSLLGPSFTAMLM  345 (381)
T ss_pred             HHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            44444433333222  11 12222333344444455566666677888887778788877666666 8999999999999


Q ss_pred             hcchhhHHHHHHHHHHHH
Q 012286          404 DHVNNWRKTTLALTSIFF  421 (466)
Q Consensus       404 ~~~g~~~~~~~~~~~~~~  421 (466)
                      |+.| +...|.+.+.+.+
T Consensus       346 ~~~g-~~~~f~~~~~~~l  362 (381)
T PRK03633        346 QNYS-DNLLFIMIASVSF  362 (381)
T ss_pred             HHhC-ccHHHHHHHHHHH
Confidence            9887 6666666555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=4.1e-33  Score=261.52  Aligned_cols=371  Identities=13%  Similarity=0.074  Sum_probs=258.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .+..++..+....+....+.+.+|++.++.+.+++.+.+.+++.++.+++|+++||+|||++++.+.++.++++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~   88 (393)
T PRK11195          9 MAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG   88 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence            33445555544444555566678999999999999999999999999999999999999999999999999999888877


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  166 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  166 (466)
                      ++.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...+
T Consensus        89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            664   77999999999999999999999999999999999999999999999999999999885 48888877765544


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhh
Q 012286          167 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  246 (466)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (466)
                      +. .+..+.+||.+.+.++.+. +..                                        ...++..+.++.++
T Consensus       165 ~~-~~~~~~l~~~~~~~~~~~~-~~~----------------------------------------~~~~~~~~~~~~l~  202 (393)
T PRK11195        165 LA-ALFNLFIPRLGARRPGQSW-NPI----------------------------------------ALLRDFFHACRVLW  202 (393)
T ss_pred             HH-HHHHhcCCCCcccccccCC-CHH----------------------------------------HHHHHHHHHHHHHH
Confidence            33 3333445653211100000 000                                        00111223445667


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHH
Q 012286          247 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  325 (466)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  325 (466)
                      ++|.+........+.........+..|.|+++.+|.++... .......++.+++.+..+++.||.+++     +.+..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g  277 (393)
T PRK11195        203 RDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAG  277 (393)
T ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHH
Confidence            77776655554444444455556667778888888886655 444566677888888888888877665     444444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch-hhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          326 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ..++. ........++.+.......+.+++.+...++..+...+..|++. +|++.++.+...+. +..++..+.+.+ +
T Consensus       278 ~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~-~~~~~~~~~~~~-~  354 (393)
T PRK11195        278 ILMGL-VVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENL-AMLLMLGLYSLL-V  354 (393)
T ss_pred             HHHHH-HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHH-HHHHHHHHHHHH-H
Confidence            33322 22222333444545555556777777666777777766544444 79999999888877 878888787755 4


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIWFVGIF  432 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  432 (466)
                      ..| -...+.+.....+....+...+++
T Consensus       355 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK11195        355 KLG-VPVVAVIVGFGLLVALAMALLWRW  381 (393)
T ss_pred             HcC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 445566655555555555555543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=4e-33  Score=261.98  Aligned_cols=357  Identities=15%  Similarity=0.145  Sum_probs=272.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+++..++.|++....+++.|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++.
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~   86 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW   86 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             h---hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC----------
Q 012286           85 S---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------  151 (466)
Q Consensus        85 ~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------  151 (466)
                      .   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+||.+++.+...          
T Consensus        87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885        87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence            4   368999999999999999999999999999999999999999999999999999999998876421          


Q ss_pred             ----------------cchhHHHHHhHHHHHHHHHHHHhh-ccccccCCCCCccccccccccccccccccCCCCcccccc
Q 012286          152 ----------------LNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  214 (466)
Q Consensus       152 ----------------~gwr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (466)
                                      .+||++|++.+++.++..++..+. .|+.+    ++++++ .                      
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~----~~~~~~-~----------------------  219 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN----HSDAKQ-I----------------------  219 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cccccc-c----------------------
Confidence                            369999999988776655444322 12210    000000 0                      


Q ss_pred             ccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhc-cccch-hhHHHhh
Q 012286          215 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY-HMSNA-DMMFGGV  292 (466)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~  292 (466)
                                            +..++.++++|+|+++...+..+++.........+++.|.++.. +.+.. ...+...
T Consensus       220 ----------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~  277 (410)
T TIGR00885       220 ----------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIG  277 (410)
T ss_pred             ----------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence                                  00013446678888888788777877777777888999987643 22221 1223444


Q ss_pred             hhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccC
Q 012286          293 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK  372 (466)
Q Consensus       293 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (466)
                      ......+|+++++++.||+++|     +.+......+.+.+++....++.. ....+.+.+++.+..+|..++...+..+
T Consensus       278 ~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g  351 (410)
T TIGR00885       278 AMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLG  351 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5567789999999999999888     667666666666666555544433 3555666777777888999999999888


Q ss_pred             CchhhHHHHHHHHHHHhhcccCccchhHHhhhcc-----hhhHHHHHHHHHH
Q 012286          373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-----NNWRKTTLALTSI  419 (466)
Q Consensus       373 ~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-----g~~~~~~~~~~~~  419 (466)
                      ++.+..+.++...   ..|+.+.|++.|.+.|..     |+++..|++-..+
T Consensus       352 ~~~~~~s~~l~~~---~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       352 QDTKYGAAGLVMA---IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             hhhhhhHHHHHHH---HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            7765545555432   248899999999999954     3466666654333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=3.9e-33  Score=263.00  Aligned_cols=354  Identities=14%  Similarity=0.078  Sum_probs=246.4

Q ss_pred             HHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh----
Q 012286           10 AMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG----   84 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~----   84 (466)
                      .++.........+.+|. +.+|+|.|+++.|++.+++.+++.++++++|+++||+||||++..+.+...++.+...    
T Consensus        24 ~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~  103 (392)
T PRK12382         24 VFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI  103 (392)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc
Confidence            33444444455566664 6789999999999999999999999999999999999999999999888777654322    


Q ss_pred             ----hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHH
Q 012286           85 ----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWG  160 (466)
Q Consensus        85 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  160 (466)
                          ..++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..+||++++.+.+..|||+.+.+
T Consensus       104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        104 LPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence                2368899999999999999998998999999999999999999999999999999999999999998999988776


Q ss_pred             hHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhh
Q 012286          161 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  240 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (466)
                      ..+..++..    ...++.++.  ++++++ .                                        .+.   ++
T Consensus       184 ~~~~~~~~~----~~~~~~~~~--~~~~~~-~----------------------------------------~~~---~~  213 (392)
T PRK12382        184 TMVLPLLAW----AFNGTVRKV--PAHAGE-R----------------------------------------PSL---WS  213 (392)
T ss_pred             HHHHHHHHH----HHHHhccCC--CCCccc-C----------------------------------------chH---HH
Confidence            544332221    121211100  000000 0                                        000   00


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhH
Q 012286          241 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK  320 (466)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  320 (466)
                      ..+.+. .+.     +...+..........+.|.|+++. +.+.... ......++.+++.++.|++.||+++|     +
T Consensus       214 ~~~~~~-~~~-----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~g~l~~r~g~~-----~  280 (392)
T PRK12382        214 VVGLIW-KPG-----LGLALQGVGFAVIGTFVSLYFASK-GWAMAGF-TLTAFGGAFVLMRVLFGWMPDRFGGV-----K  280 (392)
T ss_pred             HHHHHH-HhH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCchhHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-----e
Confidence            111111 111     112223334445566777777663 4443222 23345566778889999999999988     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhH
Q 012286          321 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  400 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g  400 (466)
                      .+..+..+...........++.+.......+.+++.+...+.......+..|+++||++.|+.+...+. |..++|.+.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g  359 (392)
T PRK12382        281 VAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI-AYGVSGPLAG  359 (392)
T ss_pred             ehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            454444444444444444445555555556666666666666666778888999999999999887777 8889999999


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          401 VLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       401 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      .+.|+.| |+..+.+.+.+.+++..+..
T Consensus       360 ~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        360 MLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            9999877 88788777766555554433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5e-34  Score=266.68  Aligned_cols=368  Identities=15%  Similarity=0.178  Sum_probs=278.8

Q ss_pred             cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhhcchh
Q 012286           28 RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  105 (466)
Q Consensus        28 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~  105 (466)
                      ..++++|+.+.+++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            457899999999999999999999999999999999999999999999999999998874  456789999999999999


Q ss_pred             hhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-cchhHHHHHhHHHHHHHHHHHHhhccccccCCC
Q 012286          106 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  184 (466)
Q Consensus       106 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  184 (466)
                      .+|+...+.++|.|++||++..++...+..+|.+++.+++|++.+. +||+.+|++.++++++..++++++..+++.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999988 999999999999999998888877654333211


Q ss_pred             CCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHH
Q 012286          185 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  264 (466)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (466)
                      .-.+ +                   +.+.+++++.+++.+++           ...+++++++++.+|...+..++....
T Consensus       225 ~is~-~-------------------El~~I~~~k~~~~~~~~-----------~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  225 NISE-K-------------------ELKYIEKGKSEAHVKKK-----------PPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             CCCH-H-------------------HHHHHHhcccccccCCC-----------CCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence            1000 0                   01111111111111110           124799999999999999999999999


Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccc---cchhHHHHHH-HHHHHHHHHHHHHH
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKLLSAA-TFLGAISCLTAFCL  339 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~  339 (466)
                      .+.+..|+|.|+++..+++..+. .+++++.+...+..+++|.++||+.+|.   ...|++.-.. ....++.++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            99999999999999999996554 7778999999999999999999997751   1223444333 33333333333333


Q ss_pred             h--hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh-c-chhhHHHHHH
Q 012286          340 S--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-H-VNNWRKTTLA  415 (466)
Q Consensus       340 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~-~g~~~~~~~~  415 (466)
                      +  +.+..++++.+.....+...+ ....-.....|++.+..+|+.+....+ .++++|.+.|.+.. . ...|+..|++
T Consensus       354 ~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i  431 (466)
T KOG2532|consen  354 SDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAPQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLI  431 (466)
T ss_pred             CCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence            3  222333333333233332222 222222222578999999999988888 77889999999984 2 3468888888


Q ss_pred             HHHHHHHHHHHHH
Q 012286          416 LTSIFFLAAGIWF  428 (466)
Q Consensus       416 ~~~~~~~~~~~~~  428 (466)
                      .+++.++..+++.
T Consensus       432 ~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  432 AAGILIVGNIIFL  444 (466)
T ss_pred             HHHHHHHhchhee
Confidence            8877766665444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-33  Score=262.53  Aligned_cols=356  Identities=17%  Similarity=0.160  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHh-hhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh
Q 012286           10 AMIKEYVLLVAG-FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD   88 (466)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~   88 (466)
                      .+....|...++ ..+-.+.+|.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+++++..++....+|
T Consensus        54 y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s  133 (495)
T KOG2533|consen   54 YFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS  133 (495)
T ss_pred             HHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333334444432 2333477999999999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc------cCCcchhHHHHHhH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV------GSHLNWRYAFWGEA  162 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l------~~~~gwr~~f~~~~  162 (466)
                      ++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+      ....||||.|++.+
T Consensus       134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G  213 (495)
T KOG2533|consen  134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG  213 (495)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence            999999999999999999999999999999999999999999999999999999999886      34569999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      +++++..++.++++|+.+.+..-.++.+....                .++.++.......++           ..+..+
T Consensus       214 ~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~----------------~~~~~~~~~~~~~~~-----------~~~~~~  266 (495)
T KOG2533|consen  214 VITLVLGIVVFFFLPDNPSKAWFLTDEEKELV----------------VERLRESPSGGIENK-----------FKWKGF  266 (495)
T ss_pred             HHHHHHHheEEEEecCChhhccccchHHHHHH----------------HHHHHhccCCCcccc-----------cCHHHH
Confidence            99999999999999876543211111000000                000000000000000           113568


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhc----ccccc
Q 012286          243 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG----ATISN  317 (466)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~  317 (466)
                      ++.+++|.+|...+..++.....+++.+|+|.|+++..+.+..+. .+.....++++++.+++|+++||.+    +|   
T Consensus       267 ~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~---  343 (495)
T KOG2533|consen  267 KEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR---  343 (495)
T ss_pred             HHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH---
Confidence            889999999999999999999999999999999999666765444 6677888999999999999999954    32   


Q ss_pred             hhHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch-hhHHHHHHHHHHHhhcccCc
Q 012286          318 AFKLLSA-ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL-RALSMAISTVSIHIFGDVPS  395 (466)
Q Consensus       318 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~g~~~~  395 (466)
                        ..... ..+.................................+.......+...++. +-+..+......+. +++++
T Consensus       344 --~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s-~~~~~  420 (495)
T KOG2533|consen  344 --LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGS-AGAIS  420 (495)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhH-HHHhh
Confidence              22222 223333332333333323333333333333334444445555555555543 33444444344444 43444


Q ss_pred             cch
Q 012286          396 SPL  398 (466)
Q Consensus       396 ~~~  398 (466)
                      |.+
T Consensus       421 ~~~  423 (495)
T KOG2533|consen  421 GQL  423 (495)
T ss_pred             hhh
Confidence            433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=1.1e-32  Score=258.85  Aligned_cols=332  Identities=16%  Similarity=0.169  Sum_probs=245.7

Q ss_pred             HHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 012286           17 LLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICR   96 (466)
Q Consensus        17 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r   96 (466)
                      ...+.+.+|.+.+++|+|+++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR   86 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            44566888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      ++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..
T Consensus        87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102         87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999988999999999888877766666665


Q ss_pred             cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHH
Q 012286          177 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  256 (466)
Q Consensus       177 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (466)
                      ||++++.   ++++ .                                         +.++..+++++.+++|.++...+
T Consensus       167 ~~~~~~~---~~~~-~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  201 (377)
T PRK11102        167 PETLPKE---RRQP-F-----------------------------------------HLRTTIRNFASLFRHKRVLGYML  201 (377)
T ss_pred             CccCccc---ccCC-C-----------------------------------------ChHHHHHHHHHHHcChHHHHHHH
Confidence            6532210   0000 0                                         00011234556778888877666


Q ss_pred             HHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH--
Q 012286          257 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC--  333 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~--  333 (466)
                      ...+..........+.|.++.+..+.++... .......++.+++.++.+++.||+++|     +.+..+..+.....  
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~  276 (377)
T PRK11102        202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIW  276 (377)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHH
Confidence            6666666666667778888888888876554 444666788889999999999999988     55544433322211  


Q ss_pred             -HHHHHH-hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          334 -LTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       334 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                       ...... .+.+.......+.....+...........+.. |++++++.++.+......|..+++.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        277 LVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEF-PHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111 12233333333333333333333334444544 588999999987766555666666443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=5.9e-33  Score=262.57  Aligned_cols=356  Identities=14%  Similarity=0.087  Sum_probs=251.7

Q ss_pred             HHHHHHHHHHhhhhhccccccc--ccccchhHHHHH-----HHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286           11 MIKEYVLLVAGFIHGSCRGDFK--LNNFQDGVLSSA-----FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus        11 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      +.|.+|...+++..+.+.+++.  .++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888754  455566665543     333445689999999999999999999999999999999


Q ss_pred             hhhhhHH--------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc------
Q 012286           84 GSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG------  149 (466)
Q Consensus        84 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------  149 (466)
                      +++++++        .+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9998875        47889999999999999999999999999999999999999999999999998876543      


Q ss_pred             --CCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccccc
Q 012286          150 --SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  227 (466)
Q Consensus       150 --~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (466)
                        +..+||+.|++.+++.++...+ ....||+++..+++++++                                 +.  
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------------~~--  206 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHK---------------------------------KK--  206 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccc---------------------------------cc--
Confidence              3568999999877665543332 222233221100000000                                 00  


Q ss_pred             ccchhhhhhhhhhhHHhhhchhH--HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhh
Q 012286          228 ESRFLNQLSQFSQDTKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISG  304 (466)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  304 (466)
                                 .++.++.++++.  ++......++..........+.|.|.++..+.++... .......+...++.++.
T Consensus       207 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  275 (394)
T TIGR00883       207 -----------RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLS  275 (394)
T ss_pred             -----------cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Confidence                       012334444443  5555555666666677778899999988787775544 44456677888899999


Q ss_pred             hhhHhhhcccccchhHHHHHHHHHHH-HHH-HHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHH
Q 012286          305 GFILDQMGATISNAFKLLSAATFLGA-ISC-LTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM  380 (466)
Q Consensus       305 g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (466)
                      +++.||++||     +.+.....+.. ... .....  .++.+.......+.+++.+...++......|.+|+++|+++.
T Consensus       276 g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~  350 (394)
T TIGR00883       276 GALSDRIGRR-----PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGA  350 (394)
T ss_pred             HHHHHHhchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEe
Confidence            9999999988     54433322222 221 11111  134444455556666666677777888889999999999999


Q ss_pred             HHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHH
Q 012286          381 AISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  418 (466)
Q Consensus       381 g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  418 (466)
                      ++.+...+..|..++|.+.|.+.|+.|.+...++....
T Consensus       351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            98544555448888999999999988755544444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=100.00  E-value=7.9e-32  Score=264.47  Aligned_cols=376  Identities=19%  Similarity=0.285  Sum_probs=277.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .+..+....+....+..++.++++|+++.++.|++.+.+.++++++.++.|++.||+|||+++.++.++++++++++++.
T Consensus        39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            33445555666778889999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             h---------------------------------------------------hHHHHHHHHHHhhhcchhhhcchhhhhh
Q 012286           87 F---------------------------------------------------DFWSIAICRMLVGVGEASFISLAAPFID  115 (466)
Q Consensus        87 ~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~  115 (466)
                      +                                                   .+..++++|+++|+|.+..++...+++.
T Consensus       119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~  198 (633)
T TIGR00805       119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID  198 (633)
T ss_pred             HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence            4                                                   2456788999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc----------------------chhHHHHHhHHHHHHHHHHHH
Q 012286          116 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus       116 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~~~~  173 (466)
                      |++|+++|++++++++.+..+|.++|+++++++.+.+                      +||..|++.+++.++..+..+
T Consensus       199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877532                      278889998888877766544


Q ss_pred             hhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH
Q 012286          174 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  253 (466)
Q Consensus       174 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (466)
                       +.|++.+.....++.+.. +.+   ..+   .          ... + .    +.......++..+.+++++++|.++.
T Consensus       279 -~~p~~lp~~~~~~~~~~~-~~~---~~~---~----------~~~-~-~----~~~~~~~~~~~~~~~~~Ll~n~~f~~  334 (633)
T TIGR00805       279 -FFPKALPKEGKRVNVDVH-ETE---KLE---K----------SED-K-S----RKKNSDITKDFPKIIKRLLCNPIYML  334 (633)
T ss_pred             -hCccccCCcccccchhhh-hhh---ccc---c----------ccc-c-c----chhhhhhHHHHHHHHHHHHcCcHHHH
Confidence             446543221100000000 000   000   0          000 0 0    00000122344556788999999999


Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhh-hccccchhhhhhHhhhcccccchhHHHHHHHHHHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  331 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                      ..+..++.....+++..|+|.|+++.++.++... .+.....+ +.+++.+++|+++||++.+.+...++.+...++..+
T Consensus       335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~  414 (633)
T TIGR00805       335 VILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987665 33333343 567899999999999986643222222222222222


Q ss_pred             HHHH---------------------------HHH--------H-------------------------------------
Q 012286          332 SCLT---------------------------AFC--------L-------------------------------------  339 (466)
Q Consensus       332 ~~~~---------------------------~~~--------~-------------------------------------  339 (466)
                      ....                           ...        .                                     
T Consensus       415 ~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~C  494 (633)
T TIGR00805       415 LCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNC  494 (633)
T ss_pred             HHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceeccc
Confidence            1110                           000        0                                     


Q ss_pred             --------------------hh-HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccch
Q 012286          340 --------------------SS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  398 (466)
Q Consensus       340 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  398 (466)
                                          .+ ...++++.++..+..+....|....+.+.+|+++|+.+.|+.....+++|.+-+|++
T Consensus       495 sCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~  574 (633)
T TIGR00805       495 SCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPIL  574 (633)
T ss_pred             ccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHH
Confidence                                00 223444445555666677888889999999999999999999999999999999999


Q ss_pred             hHHhhhcc
Q 012286          399 VGVLQDHV  406 (466)
Q Consensus       399 ~g~l~~~~  406 (466)
                      +|++.|..
T Consensus       575 fG~~iD~s  582 (633)
T TIGR00805       575 FGLLIDVS  582 (633)
T ss_pred             Hhhhhhch
Confidence            99999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=2.8e-32  Score=253.83  Aligned_cols=342  Identities=21%  Similarity=0.275  Sum_probs=291.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      +.+..+.+.++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            45567778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      +++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..+||+.+++.+++.
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG  163 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999998877


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+...+. |                                                                    
T Consensus       164 ~~~~~~~~~~-~--------------------------------------------------------------------  174 (352)
T cd06174         164 LLLALLLLFL-L--------------------------------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHH-H--------------------------------------------------------------------
Confidence            7666554433 1                                                                    


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhH-HHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLS  323 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~  323 (466)
                         |.++...+..++..........+.|.+.++..+.++... .......++..++.++.+++.||+++|     + .+.
T Consensus       175 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~  246 (352)
T cd06174         175 ---RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLL  246 (352)
T ss_pred             ---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHH
Confidence               345555666777777788888899999998767775544 555677888999999999999999998     6 666


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          324 AATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      .+..+..+........++.+.......+.+++.+...+.......+..|+++|++..|+.+...+. +..++|.+.|.+.
T Consensus       247 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~g~l~  325 (352)
T cd06174         247 IGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL-GGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence            666666666666555666667777778888888888888889999999999999999999888877 8899999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHH
Q 012286          404 DHVNNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       404 ~~~g~~~~~~~~~~~~~~~~~~~  426 (466)
                      |..+ +...+.....+.+++.+.
T Consensus       326 ~~~~-~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         326 DTGG-YGGVFLILAALALLAALL  347 (352)
T ss_pred             cccC-cchHHHHHHHHHHHHHHH
Confidence            8765 767777766665554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.6e-33  Score=254.53  Aligned_cols=421  Identities=14%  Similarity=0.123  Sum_probs=279.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhccc--------cccc--ccccch----hHHHHHHHHHHHhhhhhhhhhhcccCCchhhH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCR--------GDFK--LNNFQD----GVLSSAFMVGLLVASPIFASLAKSHNPFRLIG   70 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~   70 (466)
                      +.++..+-.||+...++...+.+.        +.+|  .++++.    +.+++++.+|.++|++..|.++||+|||..+.
T Consensus        15 ~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~   94 (485)
T KOG0569|consen   15 VATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALL   94 (485)
T ss_pred             HHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            344455667777777765554433        3455  333333    56688999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhh-
Q 012286           71 VGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG-  146 (466)
Q Consensus        71 ~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~-  146 (466)
                      ++.++..++.++..++   +++.+++++|++.|+..|......+-++.|..|++.||....+.+.+.++|..++..++. 
T Consensus        95 ~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~  174 (485)
T KOG0569|consen   95 LSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLP  174 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccH
Confidence            9999988888887765   789999999999999999999999999999999999999999999999999999987763 


Q ss_pred             -hccCCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccc
Q 012286          147 -VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  225 (466)
Q Consensus       147 -~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (466)
                       .+.+...|++.+....+++++..+...++ ||+|+..-..+.++ ...+...+..+..++.++..++..+..++++.++
T Consensus       175 ~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~-PESPk~Ll~~k~~~-~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~  252 (485)
T KOG0569|consen  175 SLLGTEDLWPYLLAFPLIPALLQLALLPFL-PESPKYLLIKKGDE-EEARKALKFYRGKEDVEAEIEEMLREIEEEELEK  252 (485)
T ss_pred             HhcCCCcchHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHcCCH-HHHHHHHHHHhCCCcchhHHHHHHHHHHHhcccc
Confidence             45456679999999999888777665554 89887643211111 1111111111222111111111111111111110


Q ss_pred             ccccchhhhhhhhhhhHHhhhchhHHHHH-----HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccc
Q 012286          226 IGESRFLNQLSQFSQDTKVLLQEKVYVVN-----VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  299 (466)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  299 (466)
                      +.           ..+++++++++..+.-     .+.......+.+...+|...++++ .|+++... ......+....+
T Consensus       253 ~~-----------~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~  320 (485)
T KOG0569|consen  253 KK-----------QISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLL  320 (485)
T ss_pred             cc-----------CCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence            00           1245566665544432     233333344566667777777776 44665443 555667888899


Q ss_pred             cchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH----hhH-----HHHHHHHHHHHHHHHhcCccceeee-ec
Q 012286          300 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL-----YGFLALFTVGELLVFATQAPVNYVC-LH  369 (466)
Q Consensus       300 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~  369 (466)
                      .++++.++.||+|||     ++++.+..++....+++...    +..     +..++..++..+..+.+.+|+.+.+ +|
T Consensus       321 ~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE  395 (485)
T KOG0569|consen  321 STLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE  395 (485)
T ss_pred             HHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence            999999999999999     77766666655554433321    111     1234555666666677767776655 46


Q ss_pred             ccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccccccc
Q 012286          370 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQIS  448 (466)
Q Consensus       370 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  448 (466)
                      .+|++.|+.+.++.....+. ...+-...+..+.+..|.|  .|+.+.+.  ++....+.++++|| |+|+.+|+.++.+
T Consensus       396 Lf~~~~R~aa~s~~~~~~w~-~~fiv~~~fp~l~~~~g~~--~filF~i~--~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  396 LFPQSARSAAQSVATAVNWL-SNFIVGFAFPPLQNVIGPY--VFILFVIP--LAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             hCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcch--hhHHHHHH--HHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            67779999999999888888 6666677888899988852  33333333  33344444556675 7787776655544


Q ss_pred             c
Q 012286          449 L  449 (466)
Q Consensus       449 ~  449 (466)
                      +
T Consensus       471 ~  471 (485)
T KOG0569|consen  471 K  471 (485)
T ss_pred             h
Confidence            3

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=4.1e-32  Score=256.85  Aligned_cols=341  Identities=17%  Similarity=0.105  Sum_probs=247.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF   89 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~   89 (466)
                      .++..+....+.+..|.+++++|.++++.+++.+++.+++.++++++|+++||+|||+.+..+.++..++.+++++++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   94 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA   94 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            33444555566777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      +.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..|||+.|++.+++.++..
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            99999999999999888888889999999999999999999999999999999999999999999999999988877766


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchh
Q 012286          170 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  249 (466)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (466)
                      +..++. ++++++    ++++.                                              ..+++++++++|
T Consensus       175 ~~~~~~-~~~~~~----~~~~~----------------------------------------------~~~~~~~~~~~~  203 (401)
T PRK11043        175 LPTLRL-KPSKKA----RKQSQ----------------------------------------------DALTFKQLLKSK  203 (401)
T ss_pred             HHHHHc-CCCCCc----cccch----------------------------------------------HHHHHHHHHcCh
Confidence            655443 332110    00000                                              012455677778


Q ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHH
Q 012286          250 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  328 (466)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  328 (466)
                      .++...+...+..........+.|.++++ .+.++... .......++.+++.++.+++.||+++|+..  +.......+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~--~~~~~~~~~  280 (401)
T PRK11043        204 TYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL--PWLLVLFAV  280 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHH
Confidence            77765555555555555667788888865 57775544 323344566778888889999999876311  111111122


Q ss_pred             HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          329 GAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       329 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      +.........  .++.+.......+.+++.+..++.......+.. |+++|++.|+.+..... +...++.+.|.+.|..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        281 SVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGKAAALQNTLQLG-LCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHH-HHHHHHHHHHHccCCC
Confidence            2221111111  123333444445556666666666555555554 46799999999877666 6667788888887753

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=1.9e-31  Score=250.99  Aligned_cols=361  Identities=9%  Similarity=0.052  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHH-HHHhhhhhhhhhhcccCCchhh-HhHHHHHHHHHHh
Q 012286            6 VKELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAG   82 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~   82 (466)
                      +.+..++.+.......+.+|. +++|+|.|++++|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++..+
T Consensus        20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~   98 (393)
T PRK15011         20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL   98 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence            445567777776666665554 688999999999999876655 55555555555 9999999875 5566666788888


Q ss_pred             hhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCc--hhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHH
Q 012286           83 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWG  160 (466)
Q Consensus        83 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  160 (466)
                      .+++++++.+++.+.+.|...+...|...+++.|+.++++|  +...++.+.+.++|.++||++++.+.+++|||..|++
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~  178 (393)
T PRK15011         99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS  178 (393)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence            88999999987666555544556788888999998876655  3445788899999999999999999998999999999


Q ss_pred             hHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhh
Q 012286          161 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  240 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (466)
                      .++..++..+..++..||.++..+  ++++..                   +                            
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------~----------------------------  209 (393)
T PRK15011        179 AAVAFIVCGVMVWLFLPSMRKELP--LATGTL-------------------E----------------------------  209 (393)
T ss_pred             HHHHHHHHHHHHHhhcCccCCCCc--cccccc-------------------c----------------------------
Confidence            998888777776666676422110  000000                   0                            


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          241 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      ..++  +++..+...............+..+.|.|+++.++.++... .+.....+..+++.++.|+++||+++|     
T Consensus       210 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----  282 (393)
T PRK15011        210 APRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----  282 (393)
T ss_pred             cccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----
Confidence            0000  01112222222233334444556789999988888886544 333444566778889999999999998     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          320 KLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      +.+.................++.+.......+.++..+...+.......+..| ++++++.++.+...+. |..++|.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~l-g~~~g~~l~  360 (393)
T PRK15011        283 FLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRV-GWIIAGSLA  360 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHH-HHHHHHHHH
Confidence            54444333333333222333344444433333333333333333334445554 5699999998877776 889999999


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHH
Q 012286          400 GVLQDHVNNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       400 g~l~~~~g~~~~~~~~~~~~~~~~~~~  426 (466)
                      |.+.|..| |...+.....+.+++.+.
T Consensus       361 G~i~~~~g-~~~~~~~~~~~~~~~~~~  386 (393)
T PRK15011        361 GIVAEIWN-YHAVFWFALVMIIATLFC  386 (393)
T ss_pred             HHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence            99999876 776666655554444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=6.1e-32  Score=252.89  Aligned_cols=339  Identities=16%  Similarity=0.104  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            8 ELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      +..+....+...+++..|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~   87 (366)
T TIGR00886         8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA   87 (366)
T ss_pred             HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566677889995 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC----------Ccchh
Q 012286           87 F-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWR  155 (466)
Q Consensus        87 ~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr  155 (466)
                      + +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+.+          +.+||
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~  166 (366)
T TIGR00886        88 VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG  166 (366)
T ss_pred             hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            9 999999999999998664 56678999999999999999999998888888888777765543          34899


Q ss_pred             HHH-HHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhh
Q 012286          156 YAF-WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  234 (466)
Q Consensus       156 ~~f-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (466)
                      +.| +..+++..+..++.+...||.+++.+++++.+..            ..    ...         .++         
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~---------~~~---------  212 (366)
T TIGR00886       167 WAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK------------GA----RWS---------VGT---------  212 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc------------cc----ccc---------ccc---------
Confidence            999 4446555555555555545533221100000000            00    000         000         


Q ss_pred             hhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcc
Q 012286          235 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA  313 (466)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~  313 (466)
                        +..+..++.+++|.++...+..++..........+.|.|+++.++.++.+. .+..+..+.++++.++.|++.||+++
T Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~  290 (366)
T TIGR00886       213 --GALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG  290 (366)
T ss_pred             --hhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence              001134456778888887777777666777788899999999888876554 45566777888999999999999999


Q ss_pred             cccchhHHHHHHHHHHHH-HHHHHHHHh---hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHh
Q 012286          314 TISNAFKLLSAATFLGAI-SCLTAFCLS---SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  389 (466)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  389 (466)
                      |     +........... ..++.....   +.+.......+...+.+...+.......+.. |+++|+++|+.+...+.
T Consensus       291 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       291 A-----RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF-RRATGAVSGLVGAIGNL  364 (366)
T ss_pred             c-----hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc-hhhcccHHHHHHHhccC
Confidence            7     333322222222 222222222   3444444445555556666666666666655 47899999998776555

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=8.7e-32  Score=252.24  Aligned_cols=358  Identities=10%  Similarity=-0.030  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhh----HhHHHHHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATA   81 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~   81 (466)
                      +.+..+.+........+.+|.+.+|+|.|.+++|++.+.+.+...++++++|+++||+|||+..    ..+..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4455566666667777888899999999999999999999999999999999999999985433    222222222  2


Q ss_pred             hhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHh
Q 012286           82 GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE  161 (466)
Q Consensus        82 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~  161 (466)
                      .+..+++++.+++.|+++|.+.+...|...++..++  +++|++.++......++|.+++|++++.+.+++|||..|++.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            445678999999999999999888889888887765  467899999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      +...+ ..++.+ ..+++++..++ ++++ .                               +            +..++
T Consensus       165 ~~~~~-~~~~~~-~~~~~~~~~~~-~~~~-~-------------------------------~------------~~~~~  197 (382)
T TIGR00902       165 TAGLA-FMLIGF-LIKPTIPPKDA-IPED-E-------------------------------S------------QGDSA  197 (382)
T ss_pred             HHHHH-HHHHHH-HcCCCCCCCcc-cccc-c-------------------------------c------------ccchh
Confidence            65522 222222 22322111000 0000 0                               0            00123


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhH
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK  320 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  320 (466)
                      .++++|+|+++...+..++..........+.|.|+++ .|.++... .......+..+++.++.+++.||++.|     +
T Consensus       198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~  271 (382)
T TIGR00902       198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----D  271 (382)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----H
Confidence            5678899999998888888888888888899999987 67776544 334456677778888888899999887     7


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhH
Q 012286          321 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  400 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g  400 (466)
                      .+..+..............++.+.......+.++..+...+....++.+. |+++++++.++++.....+|.+++|.+.|
T Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       272 LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666666666677777778788888888888888877777776 88899999999875555458899999999


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHH
Q 012286          401 VLQDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       401 ~l~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      ++.|+.| + ..+...+.+.+.+
T Consensus       351 ~l~~~~g-~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       351 FIYPTLG-A-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHhcc-H-HHHHHHHHHHHHH
Confidence            9999987 4 4555555554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=1.4e-31  Score=252.53  Aligned_cols=340  Identities=12%  Similarity=0.061  Sum_probs=250.9

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF   89 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~   89 (466)
                      .+...+....+.+.+|.+.+++|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++.+++++
T Consensus        17 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T PRK11652         17 VAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL   96 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            33444555666778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      +.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..|||+.|++.++..++..
T Consensus        97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            99999999999999888888889999999999999999999999999999999999999988899999999988777666


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchh
Q 012286          170 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  249 (466)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (466)
                      ++..+..||+++..    +++ .                                            +..+++++.+++|
T Consensus       177 ~~~~~~~~~~~~~~----~~~-~--------------------------------------------~~~~~~~~~~~~~  207 (394)
T PRK11652        177 FSMARWMPETRPAD----ARR-T--------------------------------------------RVLASYRTLLSNR  207 (394)
T ss_pred             HHHHHhCCccCccc----cch-h--------------------------------------------HHHHHHHHHHcCh
Confidence            65555556532110    000 0                                            0123456677888


Q ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH-HHHH
Q 012286          250 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATF  327 (466)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~  327 (466)
                      .++...+..+........+..+.+.++++.++.++... .......++.+++.++.+++.||.+++     .... ....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~  282 (394)
T PRK11652        208 RFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCL  282 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            87766665555555555556677888888788775444 333444556666666777777776632     2221 2222


Q ss_pred             HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc
Q 012286          328 LGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       328 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      ...........  ..+.+.......+.+++.+...+.......+..| +++|++.++.+..... |..+++.+.+.+.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l-g~~~~~~~~~~~~~~  360 (394)
T PRK11652        283 LAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNI-GSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            22222211111  1233444555566666667777777777667664 6789999999877776 888888888887664

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=1.4e-31  Score=251.24  Aligned_cols=353  Identities=15%  Similarity=0.062  Sum_probs=255.0

Q ss_pred             HHHHHHHHHHHHHhhh-hhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            8 ELAMIKEYVLLVAGFI-HGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      +..++.........+. .+.+++++|+|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            3445555555554444 446778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  166 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  166 (466)
                      ++++.+++.|.+.|.+.+...+...++..|..|+++|++++++.....++|.++||.+++.+.+ .+||.+|++.++..+
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~  172 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA  172 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence            9999999999999988888888899999999999999999999999999999999999998875 689999999988877


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhh
Q 012286          167 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  246 (466)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (466)
                      +..++..+..|+.+++.    +++..                                        +     ..+.++.+
T Consensus       173 i~~i~~~~~~~~~~~~~----~~~~~----------------------------------------~-----~~~~~~~~  203 (395)
T PRK10054        173 FPLVFIQIWVQRSEKAI----ATETG----------------------------------------S-----VWSPSVLL  203 (395)
T ss_pred             HHHHHHHHHHhcccccc----ccchh----------------------------------------h-----hhhhhhhc
Confidence            76665555555432110    00000                                        0     00124567


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc--chhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          247 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      ++|.++...+..++.......+..+.+.|.....+.+  .... .+.....+.........+++.||.++|     +.+.
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~  278 (395)
T PRK10054        204 QDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMT  278 (395)
T ss_pred             cCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHH
Confidence            8888887777766666666556566677665433332  2222 233344455555667778888988877     5554


Q ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          324 AATFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       324 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      .+..+.......... .++.+...+...+.+.+.....+.....+.+..|++.++++.+..+ ..+. |..+||.+.|.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~-G~~~Gp~~~G~l  356 (395)
T PRK10054        279 AGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWL-GAAINPLVSGVI  356 (395)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHH-HHHHHHHHHHHH
Confidence            444444443333332 2344444555566666666656666667778888899999988764 4555 889999999999


Q ss_pred             hhcchhhHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTS  418 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~  418 (466)
                      .|+.| +...+.+.+.
T Consensus       357 ~~~~g-~~~~~~~~~~  371 (395)
T PRK10054        357 LTTLP-PWSLFVILAL  371 (395)
T ss_pred             HHHcC-hhhHHHHHHH
Confidence            99987 4445544333

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=2.1e-32  Score=254.41  Aligned_cols=333  Identities=14%  Similarity=0.058  Sum_probs=245.2

Q ss_pred             HHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012286           18 LVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   97 (466)
Q Consensus        18 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   97 (466)
                      ..+++.+|.+++|+|.|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999988888887 7889999999999


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc--chhHHHHHhHHHHHHHHHHHHhh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+..  +||+.|...++..++...   ..
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~  171 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AW  171 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HH
Confidence            9999999888888899999986 57999999999999999999999988887654  399999887765443322   22


Q ss_pred             ccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHH
Q 012286          176 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  255 (466)
Q Consensus       176 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (466)
                      .|+.+++   +++++..                               +              ....++.+|+|.++...
T Consensus       172 ~~~~~~~---~~~~~~~-------------------------------~--------------~~~~~~~~~~~~~~~~~  203 (355)
T TIGR00896       172 IPQVRRR---VAANQTT-------------------------------T--------------RLTPVRIWRSPLAWQVT  203 (355)
T ss_pred             hhhhccc---cCCCCCC-------------------------------C--------------CCCCchhhcCHhHHHHH
Confidence            3432211   0000000                               0              01233556778887776


Q ss_pred             HHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH
Q 012286          256 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  334 (466)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      +..++..........|+|.|+++ .+.++... ...+...++.++++++.|++.||+++|+    +.+.....+..+..+
T Consensus       204 ~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~  278 (355)
T TIGR00896       204 VFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLVGLC  278 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHHHHH
Confidence            66666667777788899999987 56665443 5556778889999999999999996542    444444343333333


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccC-CchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhH
Q 012286          335 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  410 (466)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  410 (466)
                      ......+..... ...+.+++.+...+.......+..+ +++++...++.+...+. +..++|.+.|++.|+.|+|.
T Consensus       279 ~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       279 GLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYL-LAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccC
Confidence            333322222221 3445566666655555555554444 46778999988776676 77789999999999888664

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=4.6e-31  Score=253.80  Aligned_cols=370  Identities=13%  Similarity=0.088  Sum_probs=263.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-----CCchh-hHhHHHHHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTF   78 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~   78 (466)
                      .+.++.+..|......+..+|...++.|.|.+++|.+ +.....+ ++.+++|+++||+     |||+. +..+.+..++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            4566777888888888999999999999999999997 4444444 5899999999999     99985 6677777777


Q ss_pred             HHHhhhhh---hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC-Ccch
Q 012286           79 ATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNW  154 (466)
Q Consensus        79 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gw  154 (466)
                      +..++++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            77777665   5788999999999999999999999999999999999999999999999999999999999988 5799


Q ss_pred             hHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhh
Q 012286          155 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQ  234 (466)
Q Consensus       155 r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (466)
                      |..|++.+++.++..+..++ .||+++..   ++++..                               +          
T Consensus       174 r~~f~i~a~l~ll~~l~~~~-~~e~~~~~---~~~~~~-------------------------------~----------  208 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLL-APEPTDTI---PVPKTL-------------------------------E----------  208 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCcccc---ccccch-------------------------------h----------
Confidence            99999999887766555443 45532110   000000                               0          


Q ss_pred             hhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHH--hhhhhhccccchhhhhhHhhhc
Q 012286          235 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG--GVTIVCGIVGTISGGFILDQMG  312 (466)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~l~d~~~  312 (466)
                       +...++++++++++..+...+..++..........+.+.|+.+..|.++.+....  ....++.+++.+++|++.||++
T Consensus       209 -~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g  287 (491)
T PRK11010        209 -QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS  287 (491)
T ss_pred             -hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0001245566677777766655555555555666778888877788886665332  3445788899999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHH---HHHHH-hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHH
Q 012286          313 ATISNAFKLLSAATFLGAISCL---TAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH  388 (466)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  388 (466)
                      +|     +.+.....+..+..+   ..... ++.+......++..+..+...+.......+..+++.+++..|+.+....
T Consensus       288 ~~-----~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~  362 (491)
T PRK11010        288 LF-----RALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSA  362 (491)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            87     444333332222111   11121 2333333333333333333344455666777788889999999988777


Q ss_pred             hhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          389 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       389 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      + |..+++.+.|.+.|..| |...|.+...+.+.+.+....
T Consensus       363 l-g~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        363 V-GRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             H-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            7 77777889999999887 877777777666665544443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-31  Score=252.17  Aligned_cols=402  Identities=14%  Similarity=0.108  Sum_probs=301.1

Q ss_pred             HhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHH-HHHH
Q 012286           20 AGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRML   98 (466)
Q Consensus        20 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l   98 (466)
                      ++...+.++++++.+.++++|+.++......+..|+.+.+.||+|.|++.+.|.++.++|.++..+++++|++++ .-++
T Consensus        65 ~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi  144 (509)
T KOG2504|consen   65 FGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVI  144 (509)
T ss_pred             ehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999999999887 5689


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      .|+|.|..+.....++..||++| |+.+.|+...+.++|..+-|.+...+.+.+|||+.+++.+.+.+-..+......|.
T Consensus       145 ~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~  223 (509)
T KOG2504|consen  145 GGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL  223 (509)
T ss_pred             hhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999888765 99999999999999999999999999999999999999999987777777777665


Q ss_pred             cccCCCCCccccccccccccccccccCCC-----Ccccccccc---chhhhccccccccchhhhhhhhhhhHHhhhchhH
Q 012286          179 QLKGFAPAESGKAQVVASVSEGSEASNLN-----DHVSEDISD---QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  250 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (466)
                      ..+..++ ++++...   .....+..+..     .+......+   ......++.+.+.+.....+....--.++++++.
T Consensus       224 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~  299 (509)
T KOG2504|consen  224 SPPKKPN-EEKDLRN---SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK  299 (509)
T ss_pred             CcCCCch-hhhhhcc---ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch
Confidence            4433222 1111000   00000000000     000000000   0000000000000000000000000146789999


Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc-chhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      ++...+...+....+.....++|.|.++ .+.+ .......++.++..++++++.|++.|+...++.   .....+.+..
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~  375 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIA  375 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHH
Confidence            9999999999999999999999999995 4555 444566788899999999999999999884421   3444444555


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhh
Q 012286          330 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  409 (466)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  409 (466)
                      .+..+......+.+..+....+.++..+...........+.++.+.-..+.|+...+..+ +..+||++.|++.|..|+|
T Consensus       376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi-~~l~gpPiag~~~d~tg~Y  454 (509)
T KOG2504|consen  376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI-GALVGPPIAGLLYDITGNY  454 (509)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH-HHHcCcccceeeeeccCCe
Confidence            555555566667777888888888888776666666788888889999999999777776 8899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 012286          410 RKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      ...|++.+.+.+++..+++..+
T Consensus       455 ~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  455 DHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeehhhcChHHHHHHHHHHHhH
Confidence            9999999998888887777665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.3e-30  Score=225.85  Aligned_cols=346  Identities=16%  Similarity=0.158  Sum_probs=283.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh-
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-   84 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-   84 (466)
                      +..+.++.|+......++.|++++.|+++..|.+++..+++.++.+.+++.|++.+|+|+|+.++.|+.++++++.++. 
T Consensus        18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p   97 (422)
T COG0738          18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP   97 (422)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence            4456678899999999999999999999999999999999999999999999999999999999999999999999985 


Q ss_pred             --hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-----------
Q 012286           85 --SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-----------  151 (466)
Q Consensus        85 --~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----------  151 (466)
                        ...+|..++++-++.|.|.+...++...++....|+++..+.+++.+..+++|.++||++++.+..+           
T Consensus        98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~  177 (422)
T COG0738          98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQI  177 (422)
T ss_pred             hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence              5678999999999999999999999999999999998889999999999999999999999987752           


Q ss_pred             --------cchhHHHHHhHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccCCCCccccccccchhhhc
Q 012286          152 --------LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  222 (466)
Q Consensus       152 --------~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (466)
                              ..||++|...+...++..+...... |+.++..  +++.+..                              
T Consensus       178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~--~~~~~~~------------------------------  225 (422)
T COG0738         178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA--PSLGASG------------------------------  225 (422)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc--ccccccc------------------------------
Confidence                    2488899888877666555544433 3211110  0000000                              


Q ss_pred             cccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccc
Q 012286          223 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  301 (466)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  301 (466)
                                      .....+++++|+++...+..+++.........|++.|+.+..+.+..+. .+.+..+.+.++|+
T Consensus       226 ----------------~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR  289 (422)
T COG0738         226 ----------------SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR  289 (422)
T ss_pred             ----------------cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence                            0035678899999999999999999999999999999999877776554 66678889999999


Q ss_pred             hhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHH
Q 012286          302 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA  381 (466)
Q Consensus       302 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  381 (466)
                      +++.++.+|+...     +.+....+.....++.....++ ...+....+.+++.+..+|.+.+...+..+ ++...+.+
T Consensus       290 Fig~~lm~~~~~~-----k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~  362 (422)
T COG0738         290 FIGSALMSRIKPE-----KYLAFYALIAILLLLAVALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG  362 (422)
T ss_pred             HHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce
Confidence            9999999999887     7787777777777776666666 444555677788889999999999999988 55555555


Q ss_pred             HHHHHHHhhcccCccchhHHhhhcchh
Q 012286          382 ISTVSIHIFGDVPSSPLVGVLQDHVNN  408 (466)
Q Consensus       382 ~~~~~~~~~g~~~~~~~~g~l~~~~g~  408 (466)
                      +.  ++.+.|+++.|++.|++.|..|.
T Consensus       363 ~l--~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         363 LL--VMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             ee--eeheecchHHHHHHHHHHHhhhh
Confidence            54  44455888899999999999883

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=5.4e-30  Score=240.28  Aligned_cols=350  Identities=13%  Similarity=0.016  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCc----hhhHhHHHHHHHHHHhhhh
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~   85 (466)
                      .+........+.+.+|.+.+|+|.|.+++|++.+++.++..++++++|++.||+|||    +.+.+...+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            444445566777888888899999999999999999999999999999999999994    3333222222  2223344


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  165 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~  165 (466)
                      ++++|.+++.|++.|++.+...|...+++.++  +++|+++++......++|.++||++++++.+++|||..|++.++..
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            68899999999999999988899888888877  3468889999999999999999999999999999999999887654


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+ ..+..||.++.    ++++..                              .            ++..++++++
T Consensus       169 ~~~~~-~~~~~~~~~~~----~~~~~~------------------------------~------------~~~~~~~~~i  201 (382)
T PRK11128        169 ASMLL-GQLLRPTIMPQ----GESRQQ------------------------------E------------SAGWPAWKAL  201 (382)
T ss_pred             HHHHH-HHHccCCCCCc----cccccc------------------------------c------------ccccchHHHH
Confidence            44332 23333432110    000000                              0            0001246788


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +|+|.++...+..++..........+.|.|.++ .|.++... .+.....+..++..++.+++.||+++|     +.+..
T Consensus       202 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~  275 (382)
T PRK11128        202 LKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLL  275 (382)
T ss_pred             HcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHH
Confidence            899999988877777766676777788888866 56665433 333455667777888899999999887     66665


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      +........+.....++.+..++..++.++..+...+.......+. +++++++..+..+...+..|..++|.+.|.+.|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        276 SAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555556666666667777777776666666555554 666678889888655555477889999999999


Q ss_pred             cchhhHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSI  419 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~  419 (466)
                      ..|.  ..++..+.+
T Consensus       355 ~~g~--~~~~~~~~~  367 (382)
T PRK11128        355 HLGA--GVFWVMALV  367 (382)
T ss_pred             hccH--HHHHHHHHH
Confidence            9873  244444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-30  Score=224.30  Aligned_cols=347  Identities=14%  Similarity=0.048  Sum_probs=256.8

Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhc
Q 012286           29 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  108 (466)
Q Consensus        29 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  108 (466)
                      ++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|+.+...+++++++.+++++++++|.+||+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCC-CchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCc
Q 012286          109 LAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  187 (466)
Q Consensus       109 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  187 (466)
                      +..++++|.+|++ +|++++|+.-.+..+|.++||++||.+.+..|.+.+|++.+++.++...+.++..+.+....+  +
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--~  256 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--S  256 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--c
Confidence            9999999999976 589999999999999999999999999999999999999999999999888887743211100  0


Q ss_pred             cccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhh
Q 012286          188 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  267 (466)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (466)
                      ..+                                                ..++++++++|..+.........+.....
T Consensus       257 ~~~------------------------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~laf  288 (464)
T KOG3764|consen  257 TEQ------------------------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAF  288 (464)
T ss_pred             ccc------------------------------------------------CccHHHHHhCchHhhhhcchhhccchHHH
Confidence            000                                                02467888999988877766666665555


Q ss_pred             hHhhhhhhhhhhccccchhhHHH-hhhhhhccccchhhhhhHhhhcccccchhHHH-HHHHHHHHHHHHHHHHHhhHHHH
Q 012286          268 YSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISCLTAFCLSSLYGF  345 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      .--.++.+..+....+.-..... ....+...++..+.|.+.||+++.+    +.+ ..+.......+......++....
T Consensus       289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~----wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR----WLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh----HHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            55666777777776443233322 3345778899999999999999542    222 33333333333333344444333


Q ss_pred             HHHHHHHHHHHH---hcCccceeeeecccCCc---hhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHH
Q 012286          346 LALFTVGELLVF---ATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       346 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      ++..+..+++.+   ....+......+....+   .-|...++......+ |..+||.++|.+.+..| +.+.....+..
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl-a~a~GP~~gg~iv~~iG-F~wl~~iig~~  442 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL-AYAIGPTFGGSLVEAIG-FEWLMTIIGIL  442 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH-hhhccccccchheeehh-HHHHHHHHHHH
Confidence            333333333333   33334444444433333   668899999776666 99999999999999988 77666665555


Q ss_pred             HHHHHHHHHHHH
Q 012286          420 FFLAAGIWFVGI  431 (466)
Q Consensus       420 ~~~~~~~~~~~~  431 (466)
                      -+.-.-++...+
T Consensus       443 n~iyapvl~ll~  454 (464)
T KOG3764|consen  443 NLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            555444444433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=4.1e-35  Score=281.87  Aligned_cols=416  Identities=19%  Similarity=0.218  Sum_probs=269.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhccc--ccccccc---------cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHh
Q 012286            3 SMGVKELAMIKEYVLLVAGFIHGSCR--GDFKLNN---------FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV   71 (466)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~---------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~   71 (466)
                      .+..++..+.+|||...++...+...  .+++.+.         .+.++..+...+|..+|++++|.++||+|||+.+.+
T Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~   81 (451)
T PF00083_consen    2 ALIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALII   81 (451)
T ss_pred             EEeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence            45567788999999999987776555  2222222         235789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhh---hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286           72 GLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus        72 ~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                      +.++..+++++.++++   |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+
T Consensus        82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen   82 SALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999   9999999999999999999999999999999999999999999999999999998887665


Q ss_pred             cCCc---chhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccc
Q 012286          149 GSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  225 (466)
Q Consensus       149 ~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (466)
                      .+..   +||..+.+..+++++..+.. ++.||+|++.-.+++.++..+  ..++.+..+..++..++..++.++.++++
T Consensus       162 ~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (451)
T PF00083_consen  162 SYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEK--VLRKLRGKEIEDEEIEEIKAEKKESQESK  238 (451)
T ss_pred             ccccccccccccccccccccccccccc-cccccccceeccccccccccc--ccccccccccccccccccccccccccccc
Confidence            4433   49999999998887765554 455999887644333321111  11111111111111111111111110000


Q ss_pred             ccccchhhhhhhhhhhHHhhhchhH-----HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhcccc
Q 012286          226 IGESRFLNQLSQFSQDTKVLLQEKV-----YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVG  300 (466)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (466)
                                    .+++++++++.     +....+..+......+....+.|.+.++ .+.+.. .....+..+...++
T Consensus       239 --------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~~~~~~  302 (451)
T PF00083_consen  239 --------------ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS-FLATLILGLVNFLG  302 (451)
T ss_pred             --------------eeeeeccccccccccccccccccccccccccccccccccccccc-cccccc-cccccccccccccc
Confidence                          12334444432     1121222222223334455666666655 344433 33334556777788


Q ss_pred             chhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHH-----HHhh----HHHHHHHHHHHHHHHHhcCccce-eeeecc
Q 012286          301 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLSS----LYGFLALFTVGELLVFATQAPVN-YVCLHS  370 (466)
Q Consensus       301 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  370 (466)
                      .+++.++.||+|||     +.++.+....++......     ..++    ....++...+.....+....+.. .+..|.
T Consensus       303 ~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El  377 (451)
T PF00083_consen  303 TLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL  377 (451)
T ss_pred             cccccccccccccc-----cccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccc
Confidence            88888999999999     555555444444333321     1122    22233333333334443444444 566888


Q ss_pred             cCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccccc
Q 012286          371 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQ  446 (466)
Q Consensus       371 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  446 (466)
                      +|++.|+++.|+.....++ +++++|.+.+.+.+..+.+ ..+....++.++..++  ...+.|| ++++.+|.+++
T Consensus       378 fPt~~R~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~i~~i~--~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  378 FPTKVRSTGIGLSYAVGRI-GGFIIPFLFPYLFNNLGGW-GVFLIFAGVCLIAIIF--VYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccc-ccchhhHHHHHHHHhh--eeEEEeeCCCCCHHHHHhh
Confidence            8889999999999888777 7788898888888776523 2344434333333222  2224454 77777776653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1e-29  Score=270.53  Aligned_cols=346  Identities=14%  Similarity=-0.007  Sum_probs=248.4

Q ss_pred             hcccccccccc-cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHh---HHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 012286           25 GSCRGDFKLNN-FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVG  100 (466)
Q Consensus        25 ~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  100 (466)
                      ..+.++.+.+. ...++..+++.+++.++++++|+++||+|||+++..   ..+...+..+.....+|+++++++|+++|
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g  119 (1140)
T PRK06814         40 YGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMG  119 (1140)
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35555555433 346888899999999999999999999999997533   23333333333344589999999999999


Q ss_pred             hcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccc
Q 012286          101 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      ++.+...|+..+++.|++|+++|++++++.+.+.++|.++||++++++.+..+|++.|....+..++. ++..+.+|+.+
T Consensus       120 i~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  198 (1140)
T PRK06814        120 IHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTG  198 (1140)
T ss_pred             HHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999995554444433 33344445432


Q ss_pred             cCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHH
Q 012286          181 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  260 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (466)
                      ..... .+.+.                                         ...++....++.+.+++.++...+..++
T Consensus       199 ~~~~~-~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (1140)
T PRK06814        199 NAAPD-LKIDR-----------------------------------------NIIRSTITLLKYAKADKRIWLAILGISW  236 (1140)
T ss_pred             CCCCC-Ceecc-----------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            11000 00000                                         0011123357778889999998888888


Q ss_pred             HHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH-
Q 012286          261 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-  338 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  338 (466)
                      ..+....+..++|.|+++.++.++... .+.+...++.+++.++.|++.|+..+++    ....+..+.+...+.+... 
T Consensus       237 ~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~~  312 (1140)
T PRK06814        237 FWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL----YVPIGALLMGLFGLDLAFAS  312 (1140)
T ss_pred             HHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee----eehHHHHHHHHHHHHHHhcc
Confidence            777777888899999999888876554 4556777888999999999998766552    2222222222222111111 


Q ss_pred             ------------------HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhH
Q 012286          339 ------------------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  400 (466)
Q Consensus       339 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g  400 (466)
                                        ..+.+...+..++.+++.+...++..+.+.+..|++.+|+++|+.++.... +..+++.+.|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g  391 (1140)
T PRK06814        313 SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILA  391 (1140)
T ss_pred             cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHH
Confidence                              144555666667777777777778889999999999999999999887776 8888999999


Q ss_pred             HhhhcchhhHHHHHHHHH
Q 012286          401 VLQDHVNNWRKTTLALTS  418 (466)
Q Consensus       401 ~l~~~~g~~~~~~~~~~~  418 (466)
                      .+.+...++...+++.+.
T Consensus       392 ~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        392 LLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHhccCHHHHHHHHHH
Confidence            888654445544444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=3.1e-29  Score=238.73  Aligned_cols=361  Identities=16%  Similarity=0.124  Sum_probs=275.0

Q ss_pred             HHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-----h
Q 012286           13 KEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----F   87 (466)
Q Consensus        13 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~   87 (466)
                      ......+..+..+.+..++.-|+...+++.++..+...+.++++|.++||++|||+++.+.++..+..+..++.     .
T Consensus        22 S~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~  101 (524)
T PF05977_consen   22 SNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL  101 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            33444444555666666777788999999999999999999999999999999999999998887766655543     4


Q ss_pred             hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHH
Q 012286           88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  167 (466)
Q Consensus        88 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  167 (466)
                      +.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+....|-.+.|.+.++..++
T Consensus       102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~  181 (524)
T PF05977_consen  102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI  181 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999988989999998876655


Q ss_pred             HHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhc
Q 012286          168 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  247 (466)
Q Consensus       168 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (466)
                      .........|+..+    ++.+++                                         ...++..+.++.+.+
T Consensus       182 ~i~~l~~~~~~~~~----~~~~~e-----------------------------------------~~~~~l~~G~ryv~~  216 (524)
T PF05977_consen  182 SILALLRWKPPPPP----SSLPRE-----------------------------------------RFFSALREGLRYVRS  216 (524)
T ss_pred             HHHHHHHccccccc----cccchh-----------------------------------------hhhhhHHHHHHHHhc
Confidence            44433333221100    000000                                         112233456667777


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      +|.+...++..++.+.........+|.+.++..+.++... .+.+..++++++|.++.+++.+|++++     +++..+.
T Consensus       217 ~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~  291 (524)
T PF05977_consen  217 SPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLAS  291 (524)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHH
Confidence            7877776666666666666667778999998888876655 455677788888888888887777766     5666666


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          327 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      +..+...+.+...++.+...+..++.|++.........+..++..|++.||++++++++.... +..+|..+.|.+.|..
T Consensus       292 ~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  292 LLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            666666666666677777777788888888877777888889999999999999999877777 8888999999999988


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 012286          407 NNWRKTTLALTSIFFLAAG  425 (466)
Q Consensus       407 g~~~~~~~~~~~~~~~~~~  425 (466)
                      | ....+.+.++..+++.+
T Consensus       371 g-~~~al~~a~~~lll~~~  388 (524)
T PF05977_consen  371 G-VRTALLIAGAALLLSAL  388 (524)
T ss_pred             C-HHHHHHHHHHHHHHHHH
Confidence            7 44555554444333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=6.7e-30  Score=247.80  Aligned_cols=425  Identities=13%  Similarity=0.114  Sum_probs=272.6

Q ss_pred             HHHHHHHHHHH--HHHHhhhhhccccccc-----ccc--cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHH
Q 012286            6 VKELAMIKEYV--LLVAGFIHGSCRGDFK-----LNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW   76 (466)
Q Consensus         6 ~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~   76 (466)
                      .++..+..|++  ....+...+.++++..     .+.  .+.+|+.+.+.++..+++++.|+++|++|||+.++++.+++
T Consensus        50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34555666665  4445556666655332     222  34589999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-cchh
Q 012286           77 TFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWR  155 (466)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr  155 (466)
                      .++++++++++|+++++++|+++|+|.|....+.+.+++|..|++.||...+..+....+|..++..++....+. .+||
T Consensus       130 ~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr  209 (513)
T KOG0254|consen  130 LIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWR  209 (513)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999996666555443 5899


Q ss_pred             HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhh
Q 012286          156 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  235 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (466)
                      ..+.+..+.+++..+. .++.||++++.-+..+.+..  ........... +++.+.+.++.......+....     ..
T Consensus       210 ~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a--~~~l~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~-----~~  280 (513)
T KOG0254|consen  210 IPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEA--KRSLKRLRGLS-PEDVEVELELLKIKLLVEAEVA-----EG  280 (513)
T ss_pred             HHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHH--HHHHHHHhCCC-CcchHHHHHHHHHHHHHhhhcc-----cc
Confidence            9999999999888888 77778877664332111111  11111111100 1111111111000000000000     00


Q ss_pred             hhhhhhHH-hhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhccc
Q 012286          236 SQFSQDTK-VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       236 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      +..+.+.. ...+++......+..+.+..+.+...+|.+.+++.....++. .....+..+..+++.+++.++.||+|||
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr  359 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR  359 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            00001111 122334444455555666666778888999998876555443 4444566777788888889999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHhcCccceeee-ecccCCchhhHHHH
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCLS------------SLYGFLALFTVGELLVFATQAPVNYVC-LHSVKPSLRALSMA  381 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  381 (466)
                           ++++.+.....+..++.....            ..+..++..++..........++.+.+ .|.+|.+.|+++.+
T Consensus       360 -----~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s  434 (513)
T KOG0254|consen  360 -----KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGAS  434 (513)
T ss_pred             -----HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHH
Confidence                 666665555555444332211            124455555556666667777777755 55566699999999


Q ss_pred             HHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccccccccc
Q 012286          382 ISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK-SIDKFNEDGENQIS  448 (466)
Q Consensus       382 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  448 (466)
                      +.....+.....+ ...+..+.+..+ ....+........+.... +.....| +|+++.++.++...
T Consensus       435 ~~~~~n~~~~~~v-~~~~~~~~~~~~-~~~~f~~f~~~~~~~~~~-fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  435 LAVAVNWLWNFLI-SFFFPFITEALG-IGGTFGYFGGICLLSLII-FVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcc-ccchHHHHHHHHHHHHHH-HheEEcccCCCCcHHHHHHHHH
Confidence            9988888856555 334444444332 122343333333333331 2222445 47777777666443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=5.5e-29  Score=235.04  Aligned_cols=366  Identities=10%  Similarity=0.018  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHH-hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCC-chhhHhHHHHHHHHHHhh
Q 012286            6 VKELAMIKEYVLLVA-GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~   83 (466)
                      ++...+++-...... +++.+.+.+++|++.+++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            455566665555555 566777888899999999999999999999999999999999965 778888899988898888


Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhh--------ccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchh
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR  155 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  155 (466)
                      .+.++++.+++.|++.|++.+...+...++..        |......|.|.+|      .+|.++||.+++.+.....|+
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~  160 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI  160 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH
Confidence            99999999999999999987766666555432        2223234555555      368888898888774433455


Q ss_pred             HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhh
Q 012286          156 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  235 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (466)
                       +|++.++..++..+. .+..||.++..   ++++..                         .              .  
T Consensus       161 -~f~~~~~~~~~~~~~-~~~~~e~~~~~---~~~~~~-------------------------~--------------~--  194 (418)
T TIGR00889       161 -QLYITAGSSALLGVF-ALTLPDIPVAK---STAKMS-------------------------I--------------K--  194 (418)
T ss_pred             -HHHHHHHHHHHHHHH-HhcCCCCCCCc---cccccC-------------------------H--------------H--
Confidence             455666655554443 33446532110   000000                         0              0  


Q ss_pred             hhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc-------chh-hHHHhhhhhhccccchhhhhh
Q 012286          236 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-------NAD-MMFGGVTIVCGIVGTISGGFI  307 (466)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~g~l  307 (466)
                      +....+.++++|+|.++...+..++..........+.|.+.++....+       ... ....++..+..+++.+..+++
T Consensus       195 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l  274 (418)
T TIGR00889       195 VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFF  274 (418)
T ss_pred             HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            000012345678888877777766665555556677787877643111       111 244456667788889999999


Q ss_pred             HhhhcccccchhHHHHHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH
Q 012286          308 LDQMGATISNAFKLLSAATFLGAISCLTAFCLS-S---LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  383 (466)
Q Consensus       308 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  383 (466)
                      .||+++|     +.+..+.++..+...+..... +   .+...+..++.+.+.+...+.....+.+.+|++.|+++.|+.
T Consensus       275 ~dr~g~r-----~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~  349 (418)
T TIGR00889       275 LKRFGIK-----KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLF  349 (418)
T ss_pred             HHHhCcH-----HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            9999998     666666665555443333322 1   233344455566666666666677788889999999999999


Q ss_pred             HHHHHhhcccCccchhHHhhhcchh-----hHHHHHHHHHHHHHHHHHHH
Q 012286          384 TVSIHIFGDVPSSPLVGVLQDHVNN-----WRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       384 ~~~~~~~g~~~~~~~~g~l~~~~g~-----~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +...+.+|.++||.+.|.+.|+.|+     |+..|.+.+++.+++.++..
T Consensus       350 ~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       350 TLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            7444444889999999999998653     77777776666555444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=5e-29  Score=266.43  Aligned_cols=338  Identities=12%  Similarity=0.034  Sum_probs=243.8

Q ss_pred             hhhhhcccccccccc--cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh---hhhhHHHHHHH
Q 012286           21 GFIHGSCRGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAIC   95 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~   95 (466)
                      ..+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++..   .+++++.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            445555656666554  3468999999999999999999999999999999999877666655544   45789999999


Q ss_pred             HHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC---------cchhHHHHHhHHHHH
Q 012286           96 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILML  166 (466)
Q Consensus        96 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~gwr~~f~~~~~~~~  166 (466)
                      |+++|++.+...++..+++.|++|+++|++++++.+.+..+|.++|+.+++++.+.         .+|++.+.+..+...
T Consensus       110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA  189 (1146)
T ss_pred             HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998765         235555544444333


Q ss_pred             HHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhh
Q 012286          167 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  246 (466)
Q Consensus       167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (466)
                      +..++..+..|+.+......++.+..                                        ...++..+.++.++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~  229 (1146)
T PRK08633        190 VLGLIFAYRLPKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLR  229 (1146)
T ss_pred             HHHHHHHhcCcCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHh
Confidence            33333334445533221100000000                                        00112234566778


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccch-hh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          247 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +++.++...+..++..........++|.|+++.++.+.. .. .+.....++.+++.++.+++.||++++     +.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~  304 (1146)
T PRK08633        230 SDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPL  304 (1146)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhH
Confidence            888888877777777777777788899999988888765 43 445666778888999999999998876     44444


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      +.++.++..+......+.+..++..++.+++.+...++....+.+..|++.||+++|+.+.+.++ |.++++.+.+.+..
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l-g~~~~~~~~~~l~~  383 (1146)
T PRK08633        305 GALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV-GMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            44444444444444445566666667777777777777788888888999999999999877776 76666655555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=1.7e-29  Score=240.19  Aligned_cols=367  Identities=16%  Similarity=0.067  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHHH-hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh--
Q 012286            8 ELAMIKEYVLLVA-GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--   84 (466)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--   84 (466)
                      +..+++....... +.....+.+++|+|+.+.|++.+.+.++..++++++|+++||+|||+++.++..+..++.....  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            4455555544443 3444456677999999999999999999999999999999999999999887766655443221  


Q ss_pred             -hhh-----hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHH
Q 012286           85 -SSF-----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  158 (466)
Q Consensus        85 -~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  158 (466)
                       .++     .+...++++++.|.+.....+....+..+ . ++++++.++......++|..++|.+++.+.+. +|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhH
Confidence             111     11112333444443333333333333322 2 23577888999999999999999999988764 899999


Q ss_pred             HHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhh
Q 012286          159 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  238 (466)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (466)
                      ++.++++++..++.++..|+.+++.+   .+++.             .    +         + ++           +..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~----~---------~-~~-----------~~~  212 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPSTAK---VANAL-------------G----A---------N-AS-----------AVS  212 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccchhh---hccch-------------h----c---------c-cc-----------ccc
Confidence            99888877766665554443211100   00000             0    0         0 00           000


Q ss_pred             hhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcc---ccchhh-HHHhhhhhhccccchhhhhhHhhhccc
Q 012286          239 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      .++.++.+|+|.++...+..............+.|.|+.+..+   .+.... ...++..+..+++.++.|++.||+++|
T Consensus       213 ~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  292 (420)
T PRK09528        213 LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK  292 (420)
T ss_pred             HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            1234566778877766655544444444555567777665432   222222 334555667778999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHH-HHHHHHhhccc
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDV  393 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~  393 (466)
                           +.+.....+..+...+....++.+.......+.+...+...+.......+..|++.+++..+. .+..... |.+
T Consensus       293 -----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l-g~~  366 (420)
T PRK09528        293 -----NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL-GAV  366 (420)
T ss_pred             -----hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH-HHH
Confidence                 555555555444444444455666555555555555555445555667788888888887665 4455555 889


Q ss_pred             CccchhHHhhhcchhhHHHHHHHHHHHHHHHH
Q 012286          394 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  425 (466)
Q Consensus       394 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  425 (466)
                      ++|.+.|++.|..| |+..+...+.+.++...
T Consensus       367 ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~  397 (420)
T PRK09528        367 FLSTLAGNLYDSIG-FQGTYLILGGIVLLFTL  397 (420)
T ss_pred             HHHHHHHHHHHhhC-chHHHHHHHHHHHHHHH
Confidence            99999999999887 87778776665544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=1.5e-28  Score=232.19  Aligned_cols=359  Identities=15%  Similarity=0.073  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-----CCch-hhHhHHHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFR-LIGVGLSVWTFA   79 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~   79 (466)
                      +..+.+.+|.........+|.+-++.|+|.+++|++..+...  .+..+++|+++||+     |||| .+..+.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            456677888888888889999999999999999999776665  58999999999999     8876 788888888888


Q ss_pred             HHhhhhh---hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-cchh
Q 012286           80 TAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWR  155 (466)
Q Consensus        80 ~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr  155 (466)
                      ..+.++.   ++++.+++..++.++..+...++..+++.|++|+|||+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            8877776   45788888888888888889999999999999999999999999999999999999999988885 5999


Q ss_pred             HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhh
Q 012286          156 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  235 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (466)
                      ..|++.++..++..+. .+..||+++..+   +++ .                                         ..
T Consensus       162 ~~f~i~a~~~l~~~l~-~~~~~e~~~~~~---~~~-~-----------------------------------------~~  195 (402)
T PRK11902        162 NTYLLMAGLMLAGALT-TLWAPEPEVPAR---PPR-S-----------------------------------------LG  195 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHhcCCCccccc---ccc-h-----------------------------------------hH
Confidence            9999998877655443 334454321100   000 0                                         00


Q ss_pred             hhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHH-hhh-hhhccccchhhhhhHhhhcc
Q 012286          236 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVT-IVCGIVGTISGGFILDQMGA  313 (466)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~l~d~~~~  313 (466)
                      ++..+++++++++|.++...+..++..........+.+.++.+..|.++....+. ... ..+.+++.++++++.||+++
T Consensus       196 ~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~  275 (402)
T PRK11902        196 EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGL  275 (402)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            0112356778899988877776666554433333445556667678876555322 222 34578889999999999998


Q ss_pred             cccchhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHHH----HHHHHHHhcCccceeeeecccCCchhhHHHHHHHH
Q 012286          314 TISNAFKLLSAATFLGAISCLTA---FCL-SSLYGFLALFT----VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV  385 (466)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  385 (466)
                      |     +.+.....+..+..+..   ... ++.+.......    ..++..+...........+..|.++++    ..+.
T Consensus       276 ~-----~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  346 (402)
T PRK11902        276 Y-----RSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSA  346 (402)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHH
Confidence            7     44443333332222111   222 23343333332    233334444555556666666655544    3333


Q ss_pred             HHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHH
Q 012286          386 SIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       386 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      .... +...++.+.|.+.|..| |...|...+.+.+.+
T Consensus       347 ~~~l-~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~  382 (402)
T PRK11902        347 LASV-GRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence            3333 55444568999999988 766666655554444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.8e-29  Score=213.55  Aligned_cols=356  Identities=15%  Similarity=0.084  Sum_probs=277.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      .++.+--.-....++++++++++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..+|.++-...
T Consensus        18 vlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~   97 (395)
T COG2807          18 VLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG   97 (395)
T ss_pred             HHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            33344444456678899999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHH
Q 012286           87 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILM  165 (466)
Q Consensus        87 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~  165 (466)
                       +.+.++.+-.+.|.|.+......+.++.+.+|+| -+..+++|....++|..+++.+...+.++. |||.....-+.++
T Consensus        98 -~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~a  175 (395)
T COG2807          98 -GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLA  175 (395)
T ss_pred             -cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHH
Confidence             7888999999999999999999999999999976 899999999999999999999998888877 7999999999888


Q ss_pred             HHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhh
Q 012286          166 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  245 (466)
Q Consensus       166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (466)
                      ++..+.++   |...+.+....+.+                                                .++-.++
T Consensus       176 llAl~~Wl---Pq~~r~~~~~~~~~------------------------------------------------~~~~~~v  204 (395)
T COG2807         176 LLALLIWL---PQALREQAASIATK------------------------------------------------LVSVRKV  204 (395)
T ss_pred             HHHHHHHh---hhcccccccccccc------------------------------------------------ccccccc
Confidence            87766654   44211110000000                                                0122367


Q ss_pred             hchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccch-hhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          246 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      +|+|.-|...+.+.+++..++....|+|.++.|. |.+.. +....++..+.+++.++....+.+|...++    ++...
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~  279 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVL  279 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHH
Confidence            8999999999999999999999999999999985 55544 445667788889999999999999855443    44444


Q ss_pred             HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCC-chhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          325 ATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      ...+..+..+...+.+ +.+...  ..+.|++.+..++.....+.....+ ++.+.-.|+.+.+.+++. ..||.+.|++
T Consensus       280 ~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~l  356 (395)
T COG2807         280 ALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHH
Confidence            4444444433333333 222222  4667777777777777776666554 778888888888888855 5599999999


Q ss_pred             hhcchhhHHHHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      .|.+|+|...+.....+.+..
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHH
Confidence            999999987777666554333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=2.6e-29  Score=233.86  Aligned_cols=318  Identities=13%  Similarity=0.072  Sum_probs=234.0

Q ss_pred             HHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-----CCchh-hHhHHHHHHHHHHhhhhh---hh
Q 012286           18 LVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FD   88 (466)
Q Consensus        18 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~   88 (466)
                      ..+++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....++.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            455778899999999999999999755 555555 99999999998     89997 567777787777777776   56


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc--------hhHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWG  160 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--------wr~~f~~  160 (466)
                      .+.+....++.+.+.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            67778888888988888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             hHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhh
Q 012286          161 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  240 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (466)
                      .++..++..+..++..||..+.  ++++ + .                                         ..++..+
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~--~~~~-~-~-----------------------------------------~~~~~~~  197 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQED--ASVP-K-P-----------------------------------------LTQAVLK  197 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcc--cccc-h-h-----------------------------------------HHHHHHH
Confidence            9987777665555444542110  0000 0 0                                         0001122


Q ss_pred             hHHhhhchhH---HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhh-hhhccccchhhhhhHhhhcccc
Q 012286          241 DTKVLLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVT-IVCGIVGTISGGFILDQMGATI  315 (466)
Q Consensus       241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~l~d~~~~~~  315 (466)
                      ++++++++|.   ++...+..++..........+.|.|+++ .|.++.+. ...... .+..+++.++++++.||+++| 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-  275 (356)
T TIGR00901       198 PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-  275 (356)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-
Confidence            4556666664   6666666666677777788899999988 77776554 223333 356778999999999999987 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHH
Q 012286          316 SNAFKLLSAATFLGAISCLTAFCL-----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  384 (466)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  384 (466)
                          +.+..+..+...........           ++.+......++.+++.+...+....+..+..|+++||+..|+.+
T Consensus       276 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  351 (356)
T TIGR00901       276 ----YALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLS  351 (356)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence                55544444444333322221           233445555556677777888889999999999999999999987


Q ss_pred             HHHH
Q 012286          385 VSIH  388 (466)
Q Consensus       385 ~~~~  388 (466)
                      ...+
T Consensus       352 ~~~~  355 (356)
T TIGR00901       352 SLSA  355 (356)
T ss_pred             HHHh
Confidence            6543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=1.6e-28  Score=210.82  Aligned_cols=390  Identities=13%  Similarity=0.118  Sum_probs=267.9

Q ss_pred             HHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           13 KEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        13 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      +.......+.+.|...+.+|.+..+..++......+..+++..+|..+|++|||+.+.+..+...+...+.+.++|+..+
T Consensus        90 d~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L  169 (528)
T KOG0253|consen   90 DAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASL  169 (528)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehh
Confidence            34444456778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHH
Q 012286           93 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus        93 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      .+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++-.+...+||||.....+.+..+.....
T Consensus       170 ~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~  247 (528)
T KOG0253|consen  170 CVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFL  247 (528)
T ss_pred             hHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH
Confidence            9999999999998 899999999999999999877777 99999999999999888899999999998886655544443


Q ss_pred             HhhccccccCCCCCcccccccc------ccccccc-------cccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          173 FVIKPLQLKGFAPAESGKAQVV------ASVSEGS-------EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       173 ~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                       +.+||+++..-.+.++.+...      +......       ...+..++++.++.+.+....++.             .
T Consensus       248 -~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~-------------r  313 (528)
T KOG0253|consen  248 -VWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEV-------------R  313 (528)
T ss_pred             -hhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccccc-------------c
Confidence             444888876432222211111      0000000       000111111111111111111111             1


Q ss_pred             hhHHhhhc----hhHHHHHHHHHHHHHHHhhhhHhhhhhh-----------------hhhhcccc---chhhHHHhhhhh
Q 012286          240 QDTKVLLQ----EKVYVVNVLGYIAYNFVIGAYSYWGPKA-----------------GYNIYHMS---NADMMFGGVTIV  295 (466)
Q Consensus       240 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~~  295 (466)
                      ....+++.    +..+ .+...++...+.+++........                 .+...+-.   .....=..+..+
T Consensus       314 g~~~nLlsp~lrkttl-llw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsl  392 (528)
T KOG0253|consen  314 GGTTNLLSPKLRKTTL-LLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSL  392 (528)
T ss_pred             cchHhhcChHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHH
Confidence            12222222    2222 12222333333444433333222                 22211111   112222245678


Q ss_pred             hccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch
Q 012286          296 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL  375 (466)
Q Consensus       296 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (466)
                      ....|.++.++++||+|||     +.+..+.++..++.++.....+.....+..+..-++..+.+...+.+..|.+|...
T Consensus       393 aefPGlLIt~~iverlGRK-----kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRK-----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             hhCCchhHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            8899999999999999999     88888888888877777776666667777788888888899999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          376 RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       376 ~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      |+++.|....+.++ |+++.|.+. ...+. ..+ .+..+...+++++.+..+
T Consensus       468 RatgvGtcSsmaRI-ggI~~p~iA-~~~e~-s~s-l~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  468 RATGVGTCSSMARI-GGIFSPVIA-MRAEL-STS-LPIFVYGALFILAGIAVC  516 (528)
T ss_pred             hhcchhhhhhHHhh-hhhhhhHHH-HHhcc-cee-ehHHHHHHHHHHHHHHhe
Confidence            99999999887787 999999777 33332 222 344444555555554444

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.97  E-value=1.4e-28  Score=223.47  Aligned_cols=356  Identities=10%  Similarity=0.012  Sum_probs=249.7

Q ss_pred             HHhhhhhcccccccccccc-hhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012286           19 VAGFIHGSCRGDFKLNNFQ-DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   97 (466)
Q Consensus        19 ~~~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   97 (466)
                      ..+++.|.+.+|+|+|+++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|+
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~  123 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV  123 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHh--HHHHHHHHHHHHhh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE--AILMLPFAVLAFVI  175 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~--~~~~~~~~~~~~~~  175 (466)
                      +.|++.|... +...++..|+|+++|+++.++...+..+|.+++++++++ ...+|||+-+.+.  +..+....+++.++
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999999999999999999 4467999766544  23333444445555


Q ss_pred             ccccccCC--CCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH
Q 012286          176 KPLQLKGF--APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  253 (466)
Q Consensus       176 ~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (466)
                      +|..++..  .++++.+..    ...+.+.....+   .    ... . +..+  .......+.++..++...+||.+..
T Consensus       202 LP~~~~sl~f~~~~~~~~~----~~~~~~~~~~~~---~----~~~-~-~~~~--~~~~~~~~~l~~~~~~~y~n~~vl~  266 (511)
T TIGR00806       202 LKRPKRSLFFNRLEDVRGA----LPCELDQMVPGP---G----GKL-E-DYLG--TCRDSFLVRMLSELVTIYRNPQLLL  266 (511)
T ss_pred             CCCCchhhhhccccccccc----cccccccCCCCC---c----ccc-c-hhhh--hhhhHHHHHHHHHHHHHhcCcchhh
Confidence            56432211  000000000    000000000000   0    000 0 0000  0111334566778888889999988


Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccccc-hhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  332 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                      ..+-+.+...+++-..+|....-++.....+ -....-++..+.+.+..+..|++-.+..+..   ...+.....+....
T Consensus       267 WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~---~l~l~v~s~~~~gl  343 (511)
T TIGR00806       267 WSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS---KLLIAVVSAIQAGL  343 (511)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH---HHHHHHHHHHHHHH
Confidence            8888888888887777777765554433111 1112224445556667777788744332210   03334444555555


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccC
Q 012286          333 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  394 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  394 (466)
                      ++++...++.|...+...+.........+....-++.....+.-|-..|+.+...-.+-.++
T Consensus       344 l~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtil  405 (511)
T TIGR00806       344 VFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTII  405 (511)
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHhe
Confidence            66666778889888888888888887777777777777877777999998876665544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=1.7e-28  Score=235.22  Aligned_cols=336  Identities=14%  Similarity=0.109  Sum_probs=241.7

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc----cCCch-hhHhHHHHHHHHHHhhhhhhh------H
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------F   89 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~   89 (466)
                      .+..+.+.+++|+++.+.|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      .
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            456777888999999999999999999999999999999998    67744 677888888888888776653      4


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccC-CCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-------CCcchhHHHHHh
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGE  161 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~gwr~~f~~~  161 (466)
                      ..+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+.       +..+||+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56777889999988888888889999987 4688999999999988888877666554433       346899999999


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      ++++++..++.++..||.++..  +++++                                           +..+..+.
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~~--~~~~~-------------------------------------------~~~~~~~~  214 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSEI--PKNIE-------------------------------------------KKLSLKQI  214 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCCC--Ccccc-------------------------------------------cCCCHHHH
Confidence            9888877777666655532110  00000                                           00011235


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      ++.++++|.++...+..++..........+.+.|.+...+.+.....+..+..++.+++.++.+++.||+++|     +.
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~  289 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----IL  289 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HH
Confidence            6778899999888777777766666666666666665555333233444556788889999999999999988     55


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhcCccceeeeecccC-------CchhhHHHHHHHHHHHhhccc
Q 012286          322 LSAATFLGAISCLTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDV  393 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~  393 (466)
                      +..+..+.....+..... ++.+...+...+.+++.+...+...+...+..+       ++.+|.+.|+.+..... |..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-g~~  368 (437)
T TIGR00792       290 FAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL-GQA  368 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH-HHH
Confidence            555554444444333332 344445555566666666666666666666544       45689999999888777 888


Q ss_pred             CccchhHHhhhcch
Q 012286          394 PSSPLVGVLQDHVN  407 (466)
Q Consensus       394 ~~~~~~g~l~~~~g  407 (466)
                      +++.+.|.+.+..|
T Consensus       369 lg~~i~g~ll~~~G  382 (437)
T TIGR00792       369 LAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999988665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=4e-28  Score=229.03  Aligned_cols=366  Identities=12%  Similarity=0.049  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh---
Q 012286            9 LAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---   84 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---   84 (466)
                      ..++.......+.+.+|. +.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++.....   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   89 (396)
T TIGR00882        10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV   89 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555554 5667999999999999999999999999999999999999999987776655443321   


Q ss_pred             hh-----hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHH
Q 012286           85 SS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFW  159 (466)
Q Consensus        85 ~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~  159 (466)
                      +.     +.+..+++.|++.|++.+...+....+..|..+  +++..++......++|.++||.+++.+.+ .+||.+|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~  166 (396)
T TIGR00882        90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFW  166 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHH
Confidence            11     233455677899999888888888777777533  34567788888889999999999998866 49999999


Q ss_pred             HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                      +.+++.++..++.+...|+.+++    ++.+..    .                 ++    ++++            ...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~-----------------~~----~~~~------------~~~  205 (396)
T TIGR00882       167 LGSGFALILMLLLMFAKPKAPSS----ATVANA----L-----------------GA----NASA------------FSL  205 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchh----hhhhcc----c-----------------cc----ccCC------------CCH
Confidence            99988887766655444432111    000000    0                 00    0000            001


Q ss_pred             hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcc---ccchhh-HHHhhhhhhccccchhhhhhHhhhcccc
Q 012286          240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  315 (466)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~  315 (466)
                      ++.++++|+|.++...+..+...........+.|.|+++.++   .+.... ...++..+..+++.+..+++.||+++| 
T Consensus       206 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-  284 (396)
T TIGR00882       206 KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-  284 (396)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            245677888888776666655555555666677888777552   222222 333455666777888999999999998 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHH-HHHHHHhhcccC
Q 012286          316 SNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVP  394 (466)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~  394 (466)
                          +.+..+..+..+........++.+.......+.+.+.............+..+++.++++.+. .+..... |.++
T Consensus       285 ----~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~l-g~~~  359 (396)
T TIGR00882       285 ----NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQL-AMIF  359 (396)
T ss_pred             ----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHH-HHHH
Confidence                555555554444444434445555555555555554433322233344555667777776665 4445555 8899


Q ss_pred             ccchhHHhhhcchhhHHHHHHHHHHHHHHHH
Q 012286          395 SSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  425 (466)
Q Consensus       395 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  425 (466)
                      +|.+.|++.|..| |...|.+.+.+.++..+
T Consensus       360 ~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       360 LSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            9999999999887 77777776666544443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2e-29  Score=223.17  Aligned_cols=412  Identities=15%  Similarity=0.114  Sum_probs=273.6

Q ss_pred             HHHHHHHHHHHHhhhhhcccccc-c-------ccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDF-K-------LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT   80 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~   80 (466)
                      -.|.|+||...++.+.|-+...| |       .++.-.+.+..+..+|..+|+++.|++.||+|||+++...+++..+++
T Consensus        49 GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t  128 (538)
T KOG0252|consen   49 GFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICS  128 (538)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHH
Confidence            35789999999999888776544 2       334456788899999999999999999999999999999999999999


Q ss_pred             Hhhhhhh-------hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC---
Q 012286           81 AGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---  150 (466)
Q Consensus        81 ~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---  150 (466)
                      ++++++.       -.+++...|++.|+|.|+-+|.+.++.+|...+++||...+...+..+.|.+.|.+++-.+..   
T Consensus       129 ~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe  208 (538)
T KOG0252|consen  129 ALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE  208 (538)
T ss_pred             HHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence            9888762       256789999999999999999999999999999999999999999999998888877655431   


Q ss_pred             ----C--------cchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccch
Q 012286          151 ----H--------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA  218 (466)
Q Consensus       151 ----~--------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (466)
                          .        .-||..+.+..++++......+. .||+.+.....+++......+..+..+         .+++++.
T Consensus       209 ~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~-M~Et~~Y~al~~~~~~~a~~d~~k~~~---------~~~~~~~  278 (538)
T KOG0252|consen  209 KIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK-MPETARYTALVSKKLKQAAGDMKKVLS---------VDIEAES  278 (538)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhHHHHhhcCHhhhhhccccccc---------cccchhh
Confidence                0        13999999888776654443332 277655431111110000000000000         0110000


Q ss_pred             hhhccccccccchhhhhhhhhhhHHhhh---chhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccch---------h
Q 012286          219 SERSIKSIGESRFLNQLSQFSQDTKVLL---QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---------D  286 (466)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  286 (466)
                      ..+ ...       ...++....+...+   .-+++...+..+++...+++....+...+++...-.+..         +
T Consensus       279 ~~~-~~~-------~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA  350 (538)
T KOG0252|consen  279 TAE-SDV-------PPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVA  350 (538)
T ss_pred             ccc-cCC-------CCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHH
Confidence            000 000       00001111122222   225666677788888888888888888777753322211         1


Q ss_pred             hHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhcCcc
Q 012286          287 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGFLALFTVGELLVFATQAP  362 (466)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  362 (466)
                      ..-..+...+.++|..+...++|++||+     +..+..+.+..+..+.+....    +.....++..+..++....-..
T Consensus       351 ~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~  425 (538)
T KOG0252|consen  351 EGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA  425 (538)
T ss_pred             HHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc
Confidence            1122334455677889999999999999     666666666666655554332    2344556666666665544333


Q ss_pred             c-eeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh-----cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012286          363 V-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSI  436 (466)
Q Consensus       363 ~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (466)
                      . ..+.+|.+|.+.|++..|+....... |++++...++++.+     ..| ....++++..+..+..+..++..  +++
T Consensus       426 ttfivpaE~FParvR~t~hGIsAA~GK~-GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~p--Etk  501 (538)
T KOG0252|consen  426 TTFIVPAEIFPARVRSTCHGISAASGKA-GAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIP--ETK  501 (538)
T ss_pred             eeEEeehhhchHHHhhhhhhHHHHhccc-hHHHHHHHhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEee--ccc
Confidence            3 44455667779999999999666666 99999999999988     544 67788887777766666555333  456


Q ss_pred             ccccccccccc
Q 012286          437 DKFNEDGENQI  447 (466)
Q Consensus       437 ~~~~~~~~~~~  447 (466)
                      ++..++.+++.
T Consensus       502 ~~~leei~~e~  512 (538)
T KOG0252|consen  502 GKSLEEISNEE  512 (538)
T ss_pred             ccCHHHhcChh
Confidence            77766664443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=3e-27  Score=226.11  Aligned_cols=386  Identities=14%  Similarity=0.065  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHHHH-hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHHHHhhhh
Q 012286            8 ELAMIKEYVLLVA-GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      ...+.+.+..+.. +.+...+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||++.++.+++.++++.+++
T Consensus        21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~  100 (489)
T PRK10207         21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM  100 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555544 455557788999999999999999998888999999999999 99999999999999999999999


Q ss_pred             hhhHHH-HHHHHHHhhhcchhhhcchhhhhhccCCCC--CchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhH
Q 012286           86 SFDFWS-IAICRMLVGVGEASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  162 (466)
Q Consensus        86 ~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  162 (466)
                      +++... ++++|+++|+|.|...|...+++.|.+|++  +|++++++++.+.++|..+||.+++++.++.|||+.|++.+
T Consensus       101 ~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~  180 (489)
T PRK10207        101 SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG  180 (489)
T ss_pred             hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence            877554 558999999999999999999999999887  45779999999999999999999999999999999999975


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccc----hh---hhh
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR----FL---NQL  235 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~  235 (466)
                      + +++..++.+...++..++.+++.+++..+........-..     ..-...-....+..+......    ..   .-.
T Consensus       181 i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~  254 (489)
T PRK10207        181 A-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS-----VVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFF  254 (489)
T ss_pred             H-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            5 4444444444444332221101100000000000000000     000000000000000000000    00   000


Q ss_pred             hhhhhhHHhhhchhHHHHHHHH--HHHHHHHhhhhHhhhhhhhhhhccc-----cchhhHHHhhhhhhccccchhhhhhH
Q 012286          236 SQFSQDTKVLLQEKVYVVNVLG--YIAYNFVIGAYSYWGPKAGYNIYHM-----SNADMMFGGVTIVCGIVGTISGGFIL  308 (466)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~  308 (466)
                      .+. ...++.+|+|.+....+.  .......+....+.++.+.++..+.     ......+..+..+..++..++.+++.
T Consensus       255 ~~~-~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~  333 (489)
T PRK10207        255 REA-FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY  333 (489)
T ss_pred             HHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH
Confidence            000 001134555555443322  2333344444445666666643222     21112232334455556677788999


Q ss_pred             hhhccccc---chhHHHHHHHHHHHHHHHHH-----HH-----HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch
Q 012286          309 DQMGATIS---NAFKLLSAATFLGAISCLTA-----FC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL  375 (466)
Q Consensus       309 d~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (466)
                      ||+++|+.   ...+... +.++.....+..     ..     ..+.++.+...++.+.+.....++....+.+..|++.
T Consensus       334 ~rl~~r~~~~~~~~k~~~-G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~  412 (489)
T PRK10207        334 THLGSKGKDLSMPMKFTL-GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL  412 (489)
T ss_pred             HHHhhCCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence            99988742   1112223 222222222111     11     1245666677788888888999998999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          376 RALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       376 ~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      +|.++|+.+...+. |+.++..+....
T Consensus       413 ~g~~~g~~~l~~~i-g~~lg~~l~~~~  438 (489)
T PRK10207        413 MGFILGMWFLTQAA-AFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence            99999999877666 777666555433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=8.6e-27  Score=223.09  Aligned_cols=416  Identities=11%  Similarity=0.026  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcc-ccc--ccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSC-RGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATA   81 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~   81 (466)
                      +....+.+.+......+.+|.. .++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3445566666666555555544 555  99999999999999999999999999999999 8999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCC---chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHH
Q 012286           82 GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  158 (466)
Q Consensus        82 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  158 (466)
                      +.+++++++.++++|++.|+|.|...|...++++|++|+++   |++++++++.+.++|.++||.+++++.++.|||+.|
T Consensus        95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f  174 (475)
T TIGR00924        95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF  174 (475)
T ss_pred             HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            99999999999999999999999999999999999998764   888999999999999999999999999989999999


Q ss_pred             HHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccccccc-c------h
Q 012286          159 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES-R------F  231 (466)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~  231 (466)
                      .+.++..++.. +.++..++..++.++ ++++ ...++.+.......................+......- .      .
T Consensus       175 ~~~~~~~~~~~-l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (475)
T TIGR00924       175 NLAAVGMVIGL-LTFFAGRHMLRDIGS-VPDP-LSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVI  251 (475)
T ss_pred             HHHHHHHHHHH-HHHHHcccccccCCC-CCCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99886554443 333333332221111 1000 00000000000000000000000000000000000000 0      0


Q ss_pred             ---hhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccch-----hhHHHhhhhhhccccchh
Q 012286          232 ---LNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-----DMMFGGVTIVCGIVGTIS  303 (466)
Q Consensus       232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  303 (466)
                         .....+...+..+-.|...+..+.+...++...+....+.++.+.++..+.+..     ...+.++..+..++..++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~  331 (475)
T TIGR00924       252 IFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPV  331 (475)
T ss_pred             HHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHH
Confidence               000000000000111222333444444455555555555566666654333211     123334455555555555


Q ss_pred             hhhhHhhhcccc---cchhHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHhcCccceeeeeccc
Q 012286          304 GGFILDQMGATI---SNAFKLLSAATFLGAISCLTAFC---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  371 (466)
Q Consensus       304 ~g~l~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (466)
                      ..++..|..||.   ....++ ..+.++..+.+.....         ..+.++.+....+.+.+.....|....+..+..
T Consensus       332 ~~~~~~~l~~~~~~~~~~~k~-~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a  410 (475)
T TIGR00924       332 LAMIWTRLGRKGKDPTTPLKF-TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIA  410 (475)
T ss_pred             HHHHHHHHHhCCCCCCcHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            444444555541   111122 3333333333333221         346777888888888998899999999999999


Q ss_pred             CCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 012286          372 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       372 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      |++.||+.+|+....... |..+++.+.....+..+ +...+...+...++..++.
T Consensus       411 P~~~~g~~~g~~~l~~~~-g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       411 PQRLMGQMLGMWFLAQAM-GSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence            999999999999766665 88888777776655543 4444544444443333333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.96  E-value=2e-26  Score=218.36  Aligned_cols=374  Identities=12%  Similarity=0.070  Sum_probs=241.4

Q ss_pred             HhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 012286           20 AGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV   99 (466)
Q Consensus        20 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   99 (466)
                      .+.+++.+..|+|-+ .+..|+.+.+.++.++..++.|+++|.||||+.++.+.++..+|+++++.++|...++++..+.
T Consensus        63 ~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   63 PASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             cHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            356778899999964 6779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc-cc
Q 012286          100 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK-PL  178 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~-p~  178 (466)
                      |+|.|... .....++|..|.|.|+...++.....-.....++.++..+..+.+|||.|++..+...+..++.+++. |.
T Consensus       142 GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  142 GVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99987665 45667999999999998888777766666667888887777777999999999998777666655544 43


Q ss_pred             cccCCCCCcccccccccccc---------------ccccccCC--CCccccccccchhhhccccccccchhhhh---hhh
Q 012286          179 QLKGFAPAESGKAQVVASVS---------------EGSEASNL--NDHVSEDISDQASERSIKSIGESRFLNQL---SQF  238 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  238 (466)
                      +.+..+.++..++...++.+               -.+.....  ........-......-. --..--.++..   ++.
T Consensus       221 ~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~~~~~P  299 (599)
T PF06609_consen  221 PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFGAPKDP  299 (599)
T ss_pred             chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhccCCCC
Confidence            21111111110100000000               00000000  00000000000000000 00000000000   111


Q ss_pred             hhhHHhhhch-hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccch---h-hHHHhhhhhhccccchhhhhhHhhhcc
Q 012286          239 SQDTKVLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---D-MMFGGVTIVCGIVGTISGGFILDQMGA  313 (466)
Q Consensus       239 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~g~l~d~~~~  313 (466)
                      .- ..+++|+ |.+...++..++....++....+.|......++.++.   . ...+.....+..++.++.+.+..|++|
T Consensus       300 l~-P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~  378 (599)
T PF06609_consen  300 LF-PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH  378 (599)
T ss_pred             cC-CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc
Confidence            11 2357776 5566666666777777777778888887777766642   1 234445566777788888999988875


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhc
Q 012286          314 TISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  391 (466)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  391 (466)
                      -+    ..++.+..+..+.+..+..  .++....+...++.+++.+....+......-..|+++.|++.|+....... |
T Consensus       379 ~K----w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~-G  453 (599)
T PF06609_consen  379 IK----WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSI-G  453 (599)
T ss_pred             hh----HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHH-h
Confidence            52    3333444444433333322  234444556667777777766666666667778889999999999766666 7


Q ss_pred             ccCccchhHHh
Q 012286          392 DVPSSPLVGVL  402 (466)
Q Consensus       392 ~~~~~~~~g~l  402 (466)
                      +.+|..++..+
T Consensus       454 GsIg~aIy~~I  464 (599)
T PF06609_consen  454 GSIGYAIYNAI  464 (599)
T ss_pred             hHHHHHHHHHH
Confidence            77776666544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=206.59  Aligned_cols=350  Identities=15%  Similarity=0.041  Sum_probs=220.9

Q ss_pred             ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhh
Q 012286           27 CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  106 (466)
Q Consensus        27 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  106 (466)
                      ..++.+.+..-.|.+.|.|.+...+.++.+|.++||+|||++++++++..++..++.+.++||..+.+.|++.|+..|- 
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-  137 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-  137 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-
Confidence            3344444556679999999999999999999999999999999999999999999999999997777789999999984 


Q ss_pred             hcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC---CcchhHHHHHh----HHHHHHHHHHHHhhcccc
Q 012286          107 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGE----AILMLPFAVLAFVIKPLQ  179 (466)
Q Consensus       107 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~gwr~~f~~~----~~~~~~~~~~~~~~~p~~  179 (466)
                      ..++.++++|.+++|+|++.++..+..+++|.++||.+|+++..   ..| +.+|...    .++...-.....+++||+
T Consensus       138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            55689999999999999999999999999999999999999987   222 2222222    222222122233444887


Q ss_pred             ccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHH
Q 012286          180 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  259 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (466)
                      .+.+++.+++....        +..+. +   .+..+..  ..           ......++++..-.........+..+
T Consensus       217 L~~rk~~~~~~~~~--------~~~~~-~---~~~~~~~--~~-----------~~v~~lrn~p~~~~i~~~~i~~l~~~  271 (451)
T KOG2615|consen  217 LPLRKRNDEHSTLQ--------EAADD-R---LALLKFA--RI-----------FKVAALRNPPLLDFISVLRIFGLHYF  271 (451)
T ss_pred             ccchhhcccccchh--------hhhhh-h---hhhcchh--hh-----------hhhhhhcCccccchHHHHHHHHHHHH
Confidence            65533321111000        00000 0   0000000  00           00000001110000112223334445


Q ss_pred             HHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 012286          260 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  339 (466)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      .+...+....++.+.+.+..++.++.+..  -+....++.+.++.+.+..+..+.+......+.....++....++....
T Consensus       272 ly~~l~s~~~~t~~~l~~~rfg~ss~~~G--~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~  349 (451)
T KOG2615|consen  272 LYLELFSGLENTVLFLTHGRFGYSSMQQG--KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA  349 (451)
T ss_pred             HHHHHHHHHHhhHHHhhcCccCCChhhhe--eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc
Confidence            55555555556666665677777755442  1223344444555555555555543222133444444444444444444


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          340 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      ...........+..+......+.+..+.....|+++||+.+|+....... +.++||.+.|.+....
T Consensus       350 ~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~al-aRaiGPlv~g~i~~Ws  415 (451)
T KOG2615|consen  350 RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGAL-ARAIGPLVSGVIFSWS  415 (451)
T ss_pred             ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHH-HHHhhhhhhheeEEEe
Confidence            44445555556666666667777788888888899999999999877777 8899999998887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.95  E-value=2.9e-26  Score=215.91  Aligned_cols=362  Identities=11%  Similarity=-0.046  Sum_probs=249.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHH--HHHHHHHHhhhhhhhh-hhcccCCchhhHhHHHHH-HHHH
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLS--SAFMVGLLVASPIFAS-LAKSHNPFRLIGVGLSVW-TFAT   80 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~--s~~~~~~~~~~~~~g~-l~dr~Grr~~l~~~~~~~-~~~~   80 (466)
                      .+..+.+.+|.......+.+|.+.+|.|.|.+++|++.  +...+...+.+|+++. ..||+||||..++...+. ....
T Consensus         5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~   84 (390)
T TIGR02718         5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL   84 (390)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence            45667888999989999999999999999999999974  6778888888888855 799999999875555332 2112


Q ss_pred             Hhhh---hhhh-HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhH
Q 012286           81 AGCG---SSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY  156 (466)
Q Consensus        81 ~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~  156 (466)
                      ...+   ..++ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.++.|||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~  164 (390)
T TIGR02718        85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP  164 (390)
T ss_pred             HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            2222   2222 33445555666677777788888888999998888988999999989999999998889999999999


Q ss_pred             HHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhh
Q 012286          157 AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS  236 (466)
Q Consensus       157 ~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (466)
                      .|++.+++.++..+..++..|+.+++   +++++                                          +   
T Consensus       165 ~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~------------------------------------------~---  196 (390)
T TIGR02718       165 AFLLVACVPLASLVCVLWLKDRAVAS---PEAPL------------------------------------------A---  196 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcCc---cccch------------------------------------------h---
Confidence            99999988877666655543331100   00000                                          0   


Q ss_pred             hhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHH-Hhhhh-hhccccchhhhhhHhhhccc
Q 012286          237 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTI-VCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~l~d~~~~~  314 (466)
                       ..+++++++|+|.++......++..........+.+.|+++ .|.++..... ..... ...+++.++.|++.||+++|
T Consensus       197 -~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       197 -RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             -hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             01245677888888877777777777677777788888887 5777665532 23333 45667788999999999988


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHhcCccceeeeecccCC-chhhHHHHHHHHHH
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCL------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSI  387 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~  387 (466)
                           +.+..+..+...........      ++.........+.++..+...+.......+..++ +.+++.+++.+...
T Consensus       275 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (390)
T TIGR02718       275 -----RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTR  349 (390)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence                 55544444332222221111      1122222223333444555555566666666666 88999999998888


Q ss_pred             HhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHH
Q 012286          388 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       388 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      +. |..++|.+.|.+.|..| +...|...+.+.+++
T Consensus       350 ~l-g~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       350 DL-GELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HH-HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence            77 99999999999999876 766676655544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=99.95  E-value=2.4e-26  Score=219.41  Aligned_cols=406  Identities=11%  Similarity=0.011  Sum_probs=260.7

Q ss_pred             HHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh------hhH
Q 012286           16 VLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDF   89 (466)
Q Consensus        16 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~   89 (466)
                      ....++...|.+++++|+|..+.+++.++. .....++++.|++.||+|||+++.++.++++++.++++++      +++
T Consensus        42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~  120 (591)
T PTZ00207         42 FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV  120 (591)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence            334556778899999999999999998874 4456678889999999999999999999999999999997      689


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhh-hhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      +.+++.|++.|+|.+...+.+...+.+|+| ++||++.|+...+.++|.++ +++..+++.  .+|+..|++.+++.++.
T Consensus       121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997 56999999999999999976 555555544  36999999999999888


Q ss_pred             HHHHHhhccccc--cCC-CC---Ccccccccc-ccc----------c---------------------------------
Q 012286          169 AVLAFVIKPLQL--KGF-AP---AESGKAQVV-ASV----------S---------------------------------  198 (466)
Q Consensus       169 ~~~~~~~~p~~~--~~~-~~---~~~~~~~~~-~~~----------~---------------------------------  198 (466)
                      .++.+.++++.+  ... ++   +++++.... ...          .                                 
T Consensus       198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~  277 (591)
T PTZ00207        198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV  277 (591)
T ss_pred             HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            888877763322  111 00   111111000 000          0                                 


Q ss_pred             -------------c-------cccccCCCCcccc----ccccchhhhccccccccchhh-hhhhhhhhHHhhhchhHHHH
Q 012286          199 -------------E-------GSEASNLNDHVSE----DISDQASERSIKSIGESRFLN-QLSQFSQDTKVLLQEKVYVV  253 (466)
Q Consensus       199 -------------~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  253 (466)
                                   .       ..+....+++.+.    ..+...+...++........+ ...+..+++.+.+++..+|.
T Consensus       278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wl  357 (591)
T PTZ00207        278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWC  357 (591)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHH
Confidence                         0       0000000000000    000000000000000000000 10111237778888999999


Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccc-cch--hhHHHhhhhhhccccchhhhhhHhhhccccc---chhHHH-HHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHM-SNA--DMMFGGVTIVCGIVGTISGGFILDQMGATIS---NAFKLL-SAAT  326 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~-~~~~  326 (466)
                      +....++...........+.++.+...|. ...  ...+.++.++++.+|++..|.+.....+|+.   ..+... ....
T Consensus       358 l~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~  437 (591)
T PTZ00207        358 LLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS  437 (591)
T ss_pred             HHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            99999888777766677777777776344 222  2236678899999999999998844443321   112232 3333


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCc-cchhHHhhhc
Q 012286          327 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQDH  405 (466)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~-~~~~g~l~~~  405 (466)
                      + +.+..++++...+.....+..++.+++.|..++.....+.+.+. ++-|+-.-+.....-+ |..+- -.++|.++|+
T Consensus       438 ~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pi-gs~~~n~~l~G~~Yd~  514 (591)
T PTZ00207        438 V-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVL-SAIFLNRLLYGEWYTQ  514 (591)
T ss_pred             H-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence            3 33333333322222456677778888888888888888888887 8888777666433333 44432 4467777764


Q ss_pred             ch------------hhHHHHHHHHHHHHHHHHHHH
Q 012286          406 VN------------NWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       406 ~g------------~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      -.            =+..+|++.+++++.+.++..
T Consensus       515 ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        515 QADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            32            145677777776666665443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=225.37  Aligned_cols=353  Identities=15%  Similarity=0.139  Sum_probs=232.3

Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhc
Q 012286           29 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  108 (466)
Q Consensus        29 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  108 (466)
                      +.++.+.....+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            45566777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCcc
Q 012286          109 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  188 (466)
Q Consensus       109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  188 (466)
                      ....++.|++++++|+.+..+ ......+..++++.++++.+  +||+.+++..+++++..++ +++.||++++.....+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            999999999999999999999 77777788888888888877  7999999999998877766 5555687776443332


Q ss_pred             cccccccccccccccc-CCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhh
Q 012286          189 GKAQVVASVSEGSEAS-NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  267 (466)
Q Consensus       189 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (466)
                      .+...+..  ++..+. ....+.++..+.....++.+.        ...+....+..+++.|++....+...+..+.. .
T Consensus       267 ~~~a~~~l--~~~a~~n~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-~  335 (521)
T KOG0255|consen  267 IDEAIKIL--KKIAKLNGRKLSVKELLRLELLLRPLKL--------LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-S  335 (521)
T ss_pred             hHHHHHHH--HHHHhhcCCCCCcHHHHHHHHHhhHhhh--------hccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-h
Confidence            22111110  000000 000000011100000000000        00001123556666665444333333333222 1


Q ss_pred             hHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhh-HH--H
Q 012286          268 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-LY--G  344 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~  344 (466)
                      ..++.-.+.....+.+.  .....+.......+....+...|+.|||     .....+..+..+.++....... ..  .
T Consensus       336 ~~y~gl~~~~~~lg~~~--~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (521)
T KOG0255|consen  336 LVYYGLSLNVSGLGGNI--YLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDDLGGWL  408 (521)
T ss_pred             HHHHhhhhhhhhcCchH--HHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence            22222222222233331  1222233346666777778999999888     6666666665555554444332 22  3


Q ss_pred             HHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          345 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ..+...+..++.+.++........|.+|+..|+.+.+..+....+ |.+++|.+.-....
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~-~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARL-GSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            555555566666666666777888889889999999999877776 88888866543333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=3.1e-24  Score=204.41  Aligned_cols=379  Identities=20%  Similarity=0.333  Sum_probs=293.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      +.+++..+.++.....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++++++++++
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            34566777888877777888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhh-------------------------------------------------h--HH-HHHHHHHHhhhcchhhhcchh
Q 012286           84 GSSF-------------------------------------------------D--FW-SIAICRMLVGVGEASFISLAA  111 (466)
Q Consensus        84 ~~~~-------------------------------------------------~--~~-~l~~~r~l~G~~~~~~~~~~~  111 (466)
                      ++-+                                                 +  ++ .++++.++.|+|....++...
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            7631                                                 0  23 567799999999999999999


Q ss_pred             hhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-------------------chhHHHHHhHHHHHHHHHHH
Q 012286          112 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-------------------NWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus       112 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------------------gwr~~f~~~~~~~~~~~~~~  172 (466)
                      +|+-|...+++-+..+|+......+|.++|.++++++.+.+                   .|..-|++.+.+.++..+..
T Consensus       260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875321                   28888888888888877776


Q ss_pred             HhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHH
Q 012286          173 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  252 (466)
Q Consensus       173 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (466)
                      +++ |+.++...++.+.+..       +..+.+            ..    ..+......+..+++.+..+++++||.+.
T Consensus       340 f~f-Pk~lp~~~~~~~~~~~-------~~~k~~------------~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~  395 (735)
T KOG3626|consen  340 FFF-PKELPKSQKRKRARDL-------HVLKTE------------SG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFM  395 (735)
T ss_pred             HhC-cccCccccccchhhhh-------cccccc------------cc----cccCCcchhhhHHHHHHHHHHHhcCchHH
Confidence            666 5544332111000000       000000            00    00111111245677888999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh--HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHH
Q 012286          253 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  330 (466)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      ..+++..+....+.++.+|+|.|++.+++.++..+  +...+...+..+|.+++|++.+|+.-+.+...++.++..++..
T Consensus       396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999996554  3334445566789999999999998775544455555555555


Q ss_pred             HHHHHHHH------------------------------------------------------------------------
Q 012286          331 ISCLTAFC------------------------------------------------------------------------  338 (466)
Q Consensus       331 ~~~~~~~~------------------------------------------------------------------------  338 (466)
                      +.....++                                                                        
T Consensus       476 ~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~  555 (735)
T KOG3626|consen  476 LFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNT  555 (735)
T ss_pred             HHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCce
Confidence            55333332                                                                        


Q ss_pred             -------Hh--------------------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhc
Q 012286          339 -------LS--------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  391 (466)
Q Consensus       339 -------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  391 (466)
                             .+                    ....+++..++..+..+....+.+.++.+.+++|+|..++|+..+..+++|
T Consensus       556 ~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg  635 (735)
T KOG3626|consen  556 IYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLG  635 (735)
T ss_pred             eeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHh
Confidence                   00                    123455555666667777888899999999999999999999999999999


Q ss_pred             ccCccchhHHhhhcc
Q 012286          392 DVPSSPLVGVLQDHV  406 (466)
Q Consensus       392 ~~~~~~~~g~l~~~~  406 (466)
                      .+-+|+++|++.|..
T Consensus       636 ~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  636 FIPSPIIFGAVIDTT  650 (735)
T ss_pred             cCCchHhhhhhHhhH
Confidence            999999999999865

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=4.1e-24  Score=205.81  Aligned_cols=367  Identities=12%  Similarity=0.029  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHHHhh-hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHHHHhhhh
Q 012286            8 ELAMIKEYVLLVAGF-IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      ...+.+.+....+.. ....+.+++|++.++.+++.+.+........+++|+++|| +|||+.+..+.++.+++..++++
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            344455555444433 4446678999999999999888877767777899999999 59999999999999999999988


Q ss_pred             hh-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCC--chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhH
Q 012286           86 SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  162 (466)
Q Consensus        86 ~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  162 (466)
                      ++ +.+.++++|+++|++.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.++.|||+.|.+.+
T Consensus       108 ~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        108 SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            74 56677789999999999999999999999998653  4568899999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHhhccccccCCC-CCcccccccccccc---------ccccccCCCCccccccccchhhhccccccccchh
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVS---------EGSEASNLNDHVSEDISDQASERSIKSIGESRFL  232 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (466)
                      +..++..+..++. ++..++.. ++++++........         ........+.+    ..+...... ..   ....
T Consensus       188 i~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~---~~~~  258 (500)
T PRK09584        188 VGMLITVVNFAFC-QRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE----IARMALGVV-AL---GIVV  258 (500)
T ss_pred             HHHHHHHHHHHHh-HHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHH-HH---HHHH
Confidence            6544443332222 11111110 01100000000000         00000000000    000000000 00   0000


Q ss_pred             hhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhh----h-----ccccchhhHHHhhhhhhccccchh
Q 012286          233 NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN----I-----YHMSNADMMFGGVTIVCGIVGTIS  303 (466)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~  303 (466)
                      ...++. ...++.-++|.+.. ++ .++....++......|.++..    .     .+.......+.++..+..++..++
T Consensus       259 ~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~  335 (500)
T PRK09584        259 IFGKEA-FAMKGAARRKMIVA-FI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPI  335 (500)
T ss_pred             HHHHHH-hhcCHHHHHHHHHH-HH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHH
Confidence            000000 00011112222222 21 122223333333334444322    1     122211223334555555566666


Q ss_pred             hhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCch
Q 012286          304 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL  375 (466)
Q Consensus       304 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (466)
                      .+++-+|.++|.+..++..++..+.+.....+.....        +.++.+....+.+++.....|....++.+..|++.
T Consensus       336 ~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~  415 (500)
T PRK09584        336 LAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL  415 (500)
T ss_pred             HHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH
Confidence            6677777777654443444444443333333322221        14567777788888888888888999999999999


Q ss_pred             hhHHHHHHHHH
Q 012286          376 RALSMAISTVS  386 (466)
Q Consensus       376 ~~~~~g~~~~~  386 (466)
                      ||+.+|+....
T Consensus       416 rg~~~g~~~l~  426 (500)
T PRK09584        416 MGFIMGSWFLT  426 (500)
T ss_pred             HHHHHHHHHHH
Confidence            99999987433

>PRK09669 putative symporter YagG; Provisional

Probab=99.92  E-value=1.2e-23  Score=201.19  Aligned_cols=333  Identities=13%  Similarity=0.057  Sum_probs=221.8

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc----cCC-chhhHhHHHHHHHHHHhhhhhhh------H
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------F   89 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~   89 (466)
                      .++.+.+.+++|+++.++|.+.++..+..++..|+.|.++||    +|| |+.++.+....+++..+....++      +
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            456667888999999999999999999999999999999998    777 45566777777777765544432      4


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccC-CCCCchhHHHHHHhhhhhhhhhhhhhhhh----ccC---CcchhHHHHHh
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGV----VGS---HLNWRYAFWGE  161 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~----l~~---~~gwr~~f~~~  161 (466)
                      +.+++..++.+.+.........++.+|+. ++++|++..++...+..+|..+++.+...    +.+   ..+|+..+.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            56666777777766667777789999998 45789998888888888887777654433    221   34799999888


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      ++++++..+..++..+|..+.   +++++                                             .+..++
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~~---~~~~~---------------------------------------------~~~~~~  221 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYTP---EVDNS---------------------------------------------SSVWKD  221 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecCC---CCcCC---------------------------------------------CCHHHH
Confidence            888777666655554432110   00000                                             011245


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      ++.+++||.++...+..++............+.|.+...+.+.....+.....+..+++.++.+++.||+++|     +.
T Consensus       222 ~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----~~  296 (444)
T PRK09669        222 LKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-----RA  296 (444)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HH
Confidence            7788899998887776665555444434434444443333222222333344566778888899999999987     55


Q ss_pred             HHHHHHHHHHHHH-HHHH-HhhHHHHHHHHHHHHHHHHhcCccceeeeecccC-------CchhhHHHHHHHHHHHhhcc
Q 012286          322 LSAATFLGAISCL-TAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGD  392 (466)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~  392 (466)
                      ...+.....+... .... .++.+...+..++.+++.+...+...+++.|.++       .+..|...|..+....+ |.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl-g~  375 (444)
T PRK09669        297 FKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL-GL  375 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH-HH
Confidence            5444433332222 2222 2345555566666777777776767777776664       23446677887766677 88


Q ss_pred             cCccchhHHhhhcch
Q 012286          393 VPSSPLVGVLQDHVN  407 (466)
Q Consensus       393 ~~~~~~~g~l~~~~g  407 (466)
                      .+++.+.|.+.+..|
T Consensus       376 alg~~i~g~ll~~~G  390 (444)
T PRK09669        376 AIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999988665

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=9.1e-23  Score=192.57  Aligned_cols=349  Identities=15%  Similarity=0.133  Sum_probs=263.8

Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhcccCCchhhH-hHHHHHHHHHHhhhhh-h-hHHHHHHHHHHhhhcchhhhcchhhh
Q 012286           37 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAPF  113 (466)
Q Consensus        37 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~  113 (466)
                      ..++..++..+..++..|+.|.++|+-|+||.++ ....+..+++.+..+. + +++...+.-++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788999999999999999999998666554 4555555666666663 3 34444555555556777778888999


Q ss_pred             hhccCCCCCc--------------------------hhHHHHHHhhhhhhhhhhhhhhhhccC--------CcchhHHHH
Q 012286          114 IDDNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFW  159 (466)
Q Consensus       114 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr~~f~  159 (466)
                      +.|..+++++                          ++..+.-.....+|.++.-.+.-.+..        ..+-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999988                          898888888888888877666544321        234689999


Q ss_pred             HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                      +.++.-++..+..++.+|+.++....++..+                                       ......++.+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~g~~~l~  271 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSS---------------------------------------YLRFGFKRLW  271 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchh---------------------------------------HHHHHHHHHH
Confidence            9998888888888888776543211111111                                       0113455666


Q ss_pred             hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccch
Q 012286          240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  318 (466)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  318 (466)
                      +.++++.|.|.....+++++++.-+.+.+......|..+..+++..+. .+..+..+.+++|.++.+++.||+|.|.+  
T Consensus       272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--  349 (477)
T PF11700_consen  272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--  349 (477)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--
Confidence            778888888999999999999999999999999999999999997776 45566789999999999999999998843  


Q ss_pred             hHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhh
Q 012286          319 FKLLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF  390 (466)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (466)
                       +.+.....+..+..+....        ..+.+.+.++..+.|.+.+..++..-++..+..|+++.+.-.|++...... 
T Consensus       350 -~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~-  427 (477)
T PF11700_consen  350 -RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA-  427 (477)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH-
Confidence             2333333333233322222        456777888888899999999999999999999999999999999887777 


Q ss_pred             cccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          391 GDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       391 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      .+.+||.+.|.+.|.+|+.+..+....++.+++.+++.
T Consensus       428 ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            88999999999999999888888877777666665554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.91  E-value=6.9e-24  Score=202.54  Aligned_cols=391  Identities=13%  Similarity=0.009  Sum_probs=246.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccC-----CchhhHhHHHHHH-HH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLIGVGLSVWT-FA   79 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~   79 (466)
                      +..+.+..|........+.|.+.+++|+|+++++...+...+...+-.+ +|+++||++     ||+.++++.++.+ ++
T Consensus        31 ~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~  109 (468)
T TIGR00788        31 GLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAIL  109 (468)
T ss_pred             HHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence            3445677788733345667778888999999999999999999998666 999999998     7778888877763 44


Q ss_pred             HHhhhhhhhHHHHH-HHHHHhhhcchhhhcchhhhhhccCCCCCchh---HHHHHHhhhhhhhhhhhhhhhhccCCcchh
Q 012286           80 TAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTA---WLSMFYMCIPTGVALGYVYGGVVGSHLNWR  155 (466)
Q Consensus        80 ~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~---~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr  155 (466)
                      ....+..++..... +..++.+++.+...++..++..|..+ +++..   ..++.....++|.++|+.+++.+.+.++||
T Consensus       110 ~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~  188 (468)
T TIGR00788       110 YGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTR  188 (468)
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            44444445544444 48899999999999999999999998 54444   334444445689999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhh
Q 012286          156 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQL  235 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (466)
                      ..|++.+.+.++..+ ..++.||.+....++.+++..                ........             ......
T Consensus       189 ~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~----------------~~~~~~~~-------------~~~~~~  238 (468)
T TIGR00788       189 ILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLE----------------MNMALLTL-------------GVLANV  238 (468)
T ss_pred             hHHHHHHHHHHHHHH-HHHhcccccccccccccccch----------------hhhhhhhh-------------hHHHHH
Confidence            999999888777633 344446532100000000000                00000000             000011


Q ss_pred             hhhhhhHHhhhchhHHHHHHHHHHH-HHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcc
Q 012286          236 SQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA  313 (466)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~  313 (466)
                      ++..++.++.+++|.++...+..++ +.........+ -.+.++..|.++... ......+++.+++..+.+++.+|++.
T Consensus       239 ~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~  317 (468)
T TIGR00788       239 KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY  317 (468)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence            1112345556777888775555444 22222111111 113334566776555 33345567777777777777777776


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHH-H---------HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH
Q 012286          314 TISNAFKLLSAATFLGAISCLTAF-C---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  383 (466)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  383 (466)
                      |     +.+..+.++.+...+... .         .++.+.......+.++..+....+....+.+..|++.+|+..++.
T Consensus       318 r-----~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~  392 (468)
T TIGR00788       318 R-----LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL  392 (468)
T ss_pred             H-----HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHH
Confidence            6     666666555555443221 0         022334444556667777777888889999999999999999999


Q ss_pred             HHHHHhhcccCccchhHHhhhcch----hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012286          384 TVSIHIFGDVPSSPLVGVLQDHVN----NWRKTTLALTSIFFLAAGIWFVGIFLKS  435 (466)
Q Consensus       384 ~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
                      +...+. |..+++.++|.+.+..|    +|...+.......+..++...+...+|+
T Consensus       393 ~s~~~l-g~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       393 ASILHL-GSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888877 89999999999988776    3444444434333333333333334555

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.91  E-value=3.2e-26  Score=218.90  Aligned_cols=383  Identities=21%  Similarity=0.358  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      +++.+.++.........++.++++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.++|++++++-
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence            34444454455556678889999999999999999999999999999999999999888889999999999999987642


Q ss_pred             h--------------------------------------------------hHHHHHHHHHHhhhcchhhhcchhhhhhc
Q 012286           87 F--------------------------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDD  116 (466)
Q Consensus        87 ~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  116 (466)
                      +                                                  -+..+++++++.|+|....++...+|+-|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            1                                                  13567889999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC---------------------c-chhHHHHHhHHHHHHHHHHHHh
Q 012286          117 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------------------L-NWRYAFWGEAILMLPFAVLAFV  174 (466)
Q Consensus       117 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------------~-gwr~~f~~~~~~~~~~~~~~~~  174 (466)
                      ..++++-+..+|+..+...+|.++|.++++.+.+.                     . .|-.-|++.+.+.++..+..+.
T Consensus       169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999877632                     1 2666777777777666666555


Q ss_pred             hccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHH
Q 012286          175 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  254 (466)
Q Consensus       175 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (466)
                      + |+..+...+.++.+...+.                 +.++...++.++++..+......+++.+..+++++||.+...
T Consensus       249 F-Pk~lp~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~  310 (539)
T PF03137_consen  249 F-PKKLPGTSERQEEKESSER-----------------KEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCL  310 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-CccCCCcccccchhhhhhc-----------------chhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHH
Confidence            5 6544432111111000000                 000000000001111111224567778889999999999999


Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh--HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHH
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  332 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                      .++.........++.+++|.|++.+++.++..+  ....+...++++|.+++|++.+|++-+.+...++.....++..+.
T Consensus       311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~  390 (539)
T PF03137_consen  311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL  390 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986554  333444457789999999999999776544334444444443333


Q ss_pred             HHHHHH--------------H-------------------------------------hhHHHHHHHHHHHHHHHHhcCc
Q 012286          333 CLTAFC--------------L-------------------------------------SSLYGFLALFTVGELLVFATQA  361 (466)
Q Consensus       333 ~~~~~~--------------~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~  361 (466)
                      ....++              .                                     .....+.+..++..+..+....
T Consensus       391 ~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~  470 (539)
T PF03137_consen  391 YSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV  470 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc
Confidence            111111              0                                     0122344444555566667777


Q ss_pred             cceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          362 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +......+.+++++|+.+.|+.....+++|.+-+|+++|.+.|..-
T Consensus       471 p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC  516 (539)
T PF03137_consen  471 PSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC  516 (539)
T ss_dssp             ----------------------------------------------
T ss_pred             chheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence            8888889999999999999999999999999999999999999653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.91  E-value=1.7e-22  Score=187.27  Aligned_cols=349  Identities=17%  Similarity=0.101  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccC-CchhhHhHHHHHHHHHHhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~   84 (466)
                      ++...++.-+....+.+..|..-++.|.|..|+|.+.+...+...+.++++|.++||++ +|+.+.+..++.++......
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666677777777888889999999999999999999999999999999986 67788788888887777777


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhh-hhhccCCc---chhHHHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHL---NWRYAFWG  160 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~---gwr~~f~~  160 (466)
                      ..++++.+++.-++..+......|...++..+...+  ++.-.|-.-...++|.+++... ++.+.+..   +....+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            888999998888888888888888888888888763  3445556666666777666433 22222222   23345666


Q ss_pred             hHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhh
Q 012286          161 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  240 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (466)
                      .+..+++.....+ .+|+.+++++.+++.+.                                             ....
T Consensus       165 ~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~---------------------------------------------~~~~  198 (400)
T PF03825_consen  165 AAILSLLLAGFAL-FLPKTPPKRSAKESVKK---------------------------------------------LLGL  198 (400)
T ss_pred             HHHHHHHHHHHHH-hCCCCccccccCCCccc---------------------------------------------ccch
Confidence            6554444333333 34654422111111000                                             0012


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchh-hHHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          241 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      +..+++|+|++....+..++..........+.+.|+++..+.+... ....++..++.++.-...+++.+|++.+     
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----  273 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----  273 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----
Confidence            3447889999998888888888888888899999999977654333 2333456677788888888898998887     


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHH----HHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccC
Q 012286          320 KLLSAATFLGAISCLTAFCL-SSLYGFLALFT----VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  394 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  394 (466)
                      +++..+....++=..+.... ++.+.......    +.+...+..+.....++.+..|++.|+++.++++.....+|..+
T Consensus       274 ~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i  353 (400)
T PF03825_consen  274 WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI  353 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence            77777777666655555544 44443333333    46777777777788888999999999999999988776669999


Q ss_pred             ccchhHHhhhcch
Q 012286          395 SSPLVGVLQDHVN  407 (466)
Q Consensus       395 ~~~~~g~l~~~~g  407 (466)
                      |..+.|++.|+.|
T Consensus       354 G~~igG~l~~~~g  366 (400)
T PF03825_consen  354 GSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999876

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.2e-24  Score=178.04  Aligned_cols=345  Identities=11%  Similarity=0.013  Sum_probs=233.4

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHHHHhhh---hhhhHHHHHHHH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICR   96 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r   96 (466)
                      +.+..+.+.|.+++.++..++.+.|+....+.+.++|++.|| +|-|..-++-+....+|.++++   .++.+|++.++|
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GR  143 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGR  143 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence            445667888899999999999999999999999999999996 5888877776777777877765   578999999999


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchh---------HHHHHhHHHHHH
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR---------YAFWGEAILMLP  167 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr---------~~f~~~~~~~~~  167 (466)
                      ++.|+|.-..-.+-.++..-|+..||.+.++|+......+|..+-..+.+++.+..+--         ......+.....
T Consensus       144 F~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~  223 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCK  223 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            99999998888888999999999999999999999999999988777777776543200         011111111111


Q ss_pred             HHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhc
Q 012286          168 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  247 (466)
Q Consensus       168 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (466)
                      ..+.+....-    .  .+++.+....++.                   ....+..+              ..+.+.  -
T Consensus       224 ~slical~lg----~--~D~rAerilh~e~-------------------g~~Ge~pk--------------Ltdv~~--f  262 (459)
T KOG4686|consen  224 QSLICALSLG----L--SDDRAERILHLEE-------------------GFLGEEPK--------------LTDVNT--F  262 (459)
T ss_pred             HHHHHHHHhh----h--hhhHHHHHHhhhc-------------------CcccCCcc--------------cccccc--c
Confidence            1111111110    0  0000000000000                   00000000              001111  2


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      .|.+|.+.+.+.+++.+...+....|.++++.+|+++.+. .+.+.....+.+..++.|.++||.|++.     +.+.+.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~a  337 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVASA  337 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHHH
Confidence            4788999999999999999999999999999999997655 4445566777788899999999999983     333333


Q ss_pred             HH-HHHH-HHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          327 FL-GAIS-CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       327 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      .+ .... ..+.+..-+++..+..+.+.+-...+   .....++..+|+++.|++.|..+...+. |..+.|++.|.+.|
T Consensus       338 ~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAc---slWP~va~~vpE~qLGTaygf~qsIqNL-gla~i~Iiag~i~d  413 (459)
T KOG4686|consen  338 CILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLAC---SLWPCVASLVPEEQLGTAYGFIQSIQNL-GLAFIPIIAGFIAD  413 (459)
T ss_pred             HHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHH---HHhhhhhhhCCHHHhcchHHHHHHHHhh-hhhHHhhhhheeec
Confidence            22 2222 22222223444444444443333332   2444556668889999999999999998 99999999999999


Q ss_pred             cchhhHHHHHH
Q 012286          405 HVNNWRKTTLA  415 (466)
Q Consensus       405 ~~g~~~~~~~~  415 (466)
                      ..|+|.+.=.+
T Consensus       414 ~~g~y~~le~f  424 (459)
T KOG4686|consen  414 GDGSYDNLEAF  424 (459)
T ss_pred             CCCchhhHHHH
Confidence            88866544333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.91  E-value=9.4e-23  Score=196.20  Aligned_cols=338  Identities=8%  Similarity=-0.020  Sum_probs=221.3

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhc----ccCC-chhhHhHHHHHHHHHHhhhhhh------hH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSF------DF   89 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~   89 (466)
                      .++...+.+.+|+++..+|.+..+.-+..++..|+.|.++|    |+|| |+.++.+....+++..++...+      .+
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~  106 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY  106 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence            34555677778999999999999999999999999999999    6698 6677778888777766654432      23


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccC-CCCCchhHHHHHHhhhhhhhhhhhhhhhhc----c---CCcchhHHHHHh
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVV----G---SHLNWRYAFWGE  161 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l----~---~~~gwr~~f~~~  161 (466)
                      ..+++.-++.+++.....+...++..|.. +++||.+..++-..+.++|..+.+.+...+    .   +..+|+....+.
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~  186 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL  186 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            45566667778888888888899999998 588999999987777777755554443322    1   123688887777


Q ss_pred             HHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          162 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      +++.++..+..++..||....   +++++..                                        ++..+..+.
T Consensus       187 ~~~~~~~~~~~~~~~~e~~~~---~~~~~~~----------------------------------------~~~~~~~~~  223 (473)
T PRK10429        187 IAFFIVSTIITLRNVHEVYSS---DNQVSAE----------------------------------------GSHLTLKDI  223 (473)
T ss_pred             HHHHHHHHHHHHcCceecCCc---ccccccc----------------------------------------ccCCCHHHH
Confidence            777666666655544542111   0000000                                        000012234


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      ++.+++||.++..++..++..........+.+.|.+...+.......+.....+..+++.++.+++.||+|+|     +.
T Consensus       224 ~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----~~  298 (473)
T PRK10429        224 VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----IL  298 (473)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HH
Confidence            6667789888887777777766666666666656555444322222333445577788889999999999998     55


Q ss_pred             HHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhcCccceeeeecccC-------CchhhHHHHHHHHHHHh
Q 012286          322 LSAATFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHI  389 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~  389 (466)
                      +..+..+.++..+....     .++.+..++...+.+++.+...+...+++.|..+       .+..|...|..+.....
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~  378 (473)
T PRK10429        299 WAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG  378 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence            54444443332222211     2334444445555556666665555666666644       23456688888766666


Q ss_pred             hcccCccchhHHhhhcch
Q 012286          390 FGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       390 ~g~~~~~~~~g~l~~~~g  407 (466)
                       |..+++.+.|.+.+..|
T Consensus       379 -~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        379 -GSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             -HHHHHHHHHHHHHHHcC
Confidence             88889999999887654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.91  E-value=4.9e-22  Score=186.29  Aligned_cols=370  Identities=12%  Similarity=0.027  Sum_probs=242.5

Q ss_pred             HHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhHhH-HHHHHHHHHhhhhhhhHH---
Q 012286           19 VAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW---   90 (466)
Q Consensus        19 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~---   90 (466)
                      ......+.+.+++|.+..+.+++..+..+...+.+|+.|+++|    |+||||.++++ .....++.++.+++++.+   
T Consensus        22 l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~  101 (477)
T TIGR01301        22 LQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF  101 (477)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence            3344455567889999999999999999999999999999999    59999988875 666667767777776643   


Q ss_pred             --------------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCc--hhHHHHHHhhhhhhhhhhhhhhhhc--cCC-
Q 012286           91 --------------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSH-  151 (466)
Q Consensus        91 --------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~-  151 (466)
                                    .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.++++.  .+. 
T Consensus       102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~  181 (477)
T TIGR01301       102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF  181 (477)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence                          223333344457777888899999999998865  5799999999999999999999864  111 


Q ss_pred             ------------cchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchh
Q 012286          152 ------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQAS  219 (466)
Q Consensus       152 ------------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (466)
                                  .+.|..|++.++..++..++..+..||.+...  +++.+..                    +.++..+
T Consensus       182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~--------------------~~~~~~~  239 (477)
T TIGR01301       182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS--------------------EAAPPSK  239 (477)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh--------------------hcccccc
Confidence                        15789999998888888887777777754221  0000000                    0000000


Q ss_pred             hhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhh-hhccccch-------h---h-
Q 012286          220 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSNA-------D---M-  287 (466)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~---~-  287 (466)
                        .+.       ....++.+++++++  .+.++.+++..++...+...+..|.+.|.. +.++.++.       .   . 
T Consensus       240 --~~~-------~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~  308 (477)
T TIGR01301       240 --HGE-------EAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGA  308 (477)
T ss_pred             --cch-------hhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHH
Confidence              000       01223334444433  467888888888888888888888887765 44543321       1   1 


Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhh---------------------HHHHH
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFL  346 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~  346 (466)
                      .-..+..+...+.+++..++.+|+|+|+    .....+.++.+.++....+..+                     .+..+
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k----~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  384 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGK----RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASAL  384 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHH
Confidence            1123334444455566777788887541    3334443444443333332221                     35666


Q ss_pred             HHHHHHHHHHHhcCccceeeeecccCC--chhhHHHHHHHHHHHhhcccCccchhHHhhhcchhh-HHHHHHHHHHHHHH
Q 012286          347 ALFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW-RKTTLALTSIFFLA  423 (466)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~  423 (466)
                      +...+.|+.....+..-+++++++.++  +..|..+|+.|.+..+ .+++.....|.+.+..|+. ...+.+.++..+++
T Consensus       385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l-pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~a  463 (477)
T TIGR01301       385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI-PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVS  463 (477)
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHH
Confidence            777778888887777778888888885  4569999999988887 8888787778877666633 33344444444344


Q ss_pred             HHH
Q 012286          424 AGI  426 (466)
Q Consensus       424 ~~~  426 (466)
                      ++.
T Consensus       464 a~~  466 (477)
T TIGR01301       464 GLL  466 (477)
T ss_pred             HHH
Confidence            333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.90  E-value=5.6e-22  Score=188.84  Aligned_cols=335  Identities=15%  Similarity=0.131  Sum_probs=256.8

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhc----ccCCch-hhHhHHHHHHHHHHhhhhh-h-------
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFR-LIGVGLSVWTFATAGCGSS-F-------   87 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~-~-------   87 (466)
                      .+..+...+.+|+++...|.+..+..+..++..|+.|.++|    |+|||| .++++....+++..++... +       
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            35667777888999999999999999999999999999999    899666 5557888888888887765 4       


Q ss_pred             hHHHHHHHHHHhhhcchhhhcchhhhhhccCC-CCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-------cchhHHHH
Q 012286           88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFW  159 (466)
Q Consensus        88 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~  159 (466)
                      ....+.+.-++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+.       .+|++...
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            23345777777789999888889999999998 56899999999999999887666666555422       16999999


Q ss_pred             HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                      +.+++.++..++..+..+|..+..  ++++                                            +..+..
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~~~--~~~~--------------------------------------------~~~~~~  215 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSVEV--TEQE--------------------------------------------KKISLR  215 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccccc--cccc--------------------------------------------cccccc
Confidence            999988888888777766611110  0000                                            011123


Q ss_pred             hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchh
Q 012286          240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      +.++.+++||.++...+..++............+.|.++..+.+.....+..+..+.++++.++.+++.||+|+|     
T Consensus       216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----  290 (428)
T PF13347_consen  216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----  290 (428)
T ss_pred             cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----
Confidence            457788999999998888888888877777788888888777774444555667788889999999999999999     


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCC-------chhhHHHHHHHHHHHhh
Q 012286          320 KLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIF  390 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~  390 (466)
                      +....+..+.+...+.....  ++.+...+...+.+.+.+.......++..|..+.       +..|...|+.+..... 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~-  369 (428)
T PF13347_consen  291 KVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI-  369 (428)
T ss_pred             eehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH-
Confidence            66666666666655555544  4778888888888889888888888888887763       3458888888777777 


Q ss_pred             cccCccchhHHhhhcch
Q 012286          391 GDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       391 g~~~~~~~~g~l~~~~g  407 (466)
                      +..+++.+.|.+.+..|
T Consensus       370 ~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            88888888888876554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=9.6e-21  Score=178.38  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHhhhhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhh
Q 012286            8 ELAMIKEYVLLVAGFIHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      ...+.+.+....+...+| .+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+.
T Consensus        16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~   95 (493)
T PRK15462         16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544555 45677999999999999999999999999999999999 9999999999999999887765


Q ss_pred             hh-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCC--CchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhH
Q 012286           86 SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  162 (466)
Q Consensus        86 ~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~  162 (466)
                      .+ +...++++..+.++|.|...+...++++|.+|++  +|.+++++.+.+.++|..++|.+.+++.+..|||+.|.+.+
T Consensus        96 ~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa  175 (493)
T PRK15462         96 SEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA  175 (493)
T ss_pred             hhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence            43 2233444555555667777788889999999976  69999999999999999999999999999999999999876


Q ss_pred             HHHHHHHHHHHh
Q 012286          163 ILMLPFAVLAFV  174 (466)
Q Consensus       163 ~~~~~~~~~~~~  174 (466)
                      +.. +..++.++
T Consensus       176 igm-~l~li~~~  186 (493)
T PRK15462        176 VGM-IAGLVIFL  186 (493)
T ss_pred             HHH-HHHHHHHH
Confidence            643 33333333

>PRK09848 glucuronide transporter; Provisional

Probab=99.89  E-value=1.8e-21  Score=186.60  Aligned_cols=332  Identities=10%  Similarity=0.001  Sum_probs=211.1

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc----CCchhh-HhHHHHHHHHHHhh-hh----hh--h
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRLI-GVGLSVWTFATAGC-GS----SF--D   88 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~----~~--~   88 (466)
                      .++.+.+.+.+|+++.++|.+.+...+..++..++.|+++||.    ||||.. ..+.+...+...+. ..    ++  .
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            3455677788899999999999999999999999999999996    766644 55555454444442 11    11  2


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCC-CCchhHHHHHHhh-----hhhhhhhhhhhhhhccCCc--chhHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMC-----IPTGVALGYVYGGVVGSHL--NWRYAFWG  160 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~~~~~l~~~~--gwr~~f~~  160 (466)
                      .+.+++.-++.+++.+...+...++..+..++ ++|.+..++-..+     ..+|..++|.+++...+..  +|.....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~  188 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV  188 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            33345556777888888888778887877654 5788876666543     3355666776665443221  12212222


Q ss_pred             hHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhh
Q 012286          161 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  240 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (466)
                      .++++++..++.+...||+.+.    ++++                                             .+..+
T Consensus       189 ~~v~~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~~~  219 (448)
T PRK09848        189 LAIAGMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSLKI  219 (448)
T ss_pred             HHHHHHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCHHH
Confidence            3333333333333222332110    0000                                             01123


Q ss_pred             hHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhh-hhhhccccchhhhhhHhhhcccccchh
Q 012286          241 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGV-TIVCGIVGTISGGFILDQMGATISNAF  319 (466)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~  319 (466)
                      .++.+++||.++...+..++..........+.|.|+++..+.++....+... ..++.+++.++.+++.||+++|     
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----  294 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----  294 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence            5778899999998888888877777777778888888887776543333222 2455677888999999999987     


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCc-------hhhHHHHHHHHHHHhh
Q 012286          320 KLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS-------LRALSMAISTVSIHIF  390 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~  390 (466)
                      +.+..+..+..+..+.....  .+.+.......+.+++.+...+...+...+..+.+       .+|...|+.+....+ 
T Consensus       295 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl-  373 (448)
T PRK09848        295 NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC-  373 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH-
Confidence            55555554444443333332  23444444455666666666666666766666543       458899998777776 


Q ss_pred             cccCccchhHHhhhcch
Q 012286          391 GDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       391 g~~~~~~~~g~l~~~~g  407 (466)
                      |..+++.+.|.+.+..|
T Consensus       374 g~aig~~i~g~~l~~~G  390 (448)
T PRK09848        374 GQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88889999988876554

>TIGR01272 gluP glucose/galactose transporter

Probab=99.89  E-value=2e-21  Score=175.40  Aligned_cols=275  Identities=13%  Similarity=0.104  Sum_probs=197.9

Q ss_pred             hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC------------
Q 012286           84 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  151 (466)
Q Consensus        84 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  151 (466)
                      +..++|+.++++-++.|.|.+...+..+.++++..|+|++++.+++.+.++.+|..+||.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35678999999999999999999999999999999999999999999999999999999999977631            


Q ss_pred             ----cchhHHHHHhHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccc
Q 012286          152 ----LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  226 (466)
Q Consensus       152 ----~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (466)
                          ..||++|++.+.+.++..++..+.. ||..+    +++++..                   +          ++. 
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~~~~~-------------------~----------~~~-  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADVARVS-------------------S----------GDT-  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccccccc-------------------c----------ccc-
Confidence                3699999977766555554433331 33110    0000000                   0          000 


Q ss_pred             cccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh--ccccchhh-HHHhhhhhhccccchh
Q 012286          227 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  303 (466)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  303 (466)
                                   ...++.+++|.++...+..+++.....+...|.+.|+.+.  ++.++... ...+....+.++|+++
T Consensus       131 -------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       131 -------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             -------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         0012355778888888888888888889999999999864  57775554 4557778889999999


Q ss_pred             hhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH
Q 012286          304 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  383 (466)
Q Consensus       304 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  383 (466)
                      ++++.||+++|     +.+..+..++++..++....+... ......+.+++.+..+|...+...+..|+ +.+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Confidence            99999999987     555555555444444333333322 23345567788888888888888887765 356666765


Q ss_pred             HHHHHhhcccCccchhHHhhhcchhhHHHHHH
Q 012286          384 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  415 (466)
Q Consensus       384 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  415 (466)
                       ..... |+++.|++.|.+.|..| .+.++++
T Consensus       271 -~~~~~-Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       271 -CLAIV-GGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             -HHHHh-cchHHHHHHHHHHHhcc-chHHHHH
Confidence             44455 88999999999999877 5556553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=1.4e-20  Score=179.80  Aligned_cols=331  Identities=13%  Similarity=0.020  Sum_probs=206.3

Q ss_pred             hhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc----cCCch-hhHhHHHHHHHHHHhhhhhhh------HH
Q 012286           22 FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FW   90 (466)
Q Consensus        22 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~   90 (466)
                      ++.....+.+|+++..+|.+..+.-+--++.-|+.|.++||    +|||| .++++....+++..++...++      +.
T Consensus        31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            45556677889999999999999999999999999999995    78765 555677777777776654442      44


Q ss_pred             HHHHHHHHhhhcchhhhcchhhhhhccCC-CCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-------cchhHHHHHhH
Q 012286           91 SIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEA  162 (466)
Q Consensus        91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~  162 (466)
                      .+.+.-++..++.......-.++.+|..+ ++||++..++...+..+|..+++.+...+.+.       .+|+....+.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            56666677788888888888899999987 67899999999999999888877665433321       36888888887


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      +++++...+++...+|..+.    ++++                                             .+..+.+
T Consensus       191 ii~~i~~~i~~~~~kE~~~~----~~~~---------------------------------------------~~~~~~l  221 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEA----PPTT---------------------------------------------TSMREDL  221 (460)
T ss_pred             HHHHHHHHHHHhcceeccCC----CccC---------------------------------------------CCHHHHH
Confidence            77666666555544332110    0000                                             0012356


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHH
Q 012286          243 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL  322 (466)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  322 (466)
                      +..++||.++.+....++..............|.+...+.+.....+.....+.++++.++++++.||+++|     +..
T Consensus       222 ~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----~~~  296 (460)
T PRK11462        222 RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----TIF  296 (460)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHH
Confidence            677888888776655555444433333333333333344332222334455677788889999999999887     444


Q ss_pred             HHHHH-HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccC-----C--chhhHHHHHHHHHHHhhccc
Q 012286          323 SAATF-LGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVK-----P--SLRALSMAISTVSIHIFGDV  393 (466)
Q Consensus       323 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~g~~~~~~~~~g~~  393 (466)
                      ..... ............. +.+...+..++.+++.+...+...++..+..+     .  +..|...+.......+ |..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl-g~a  375 (460)
T PRK11462        297 WWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL-GLA  375 (460)
T ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH-HHH
Confidence            32222 2222222222112 22233333444455444433333344444333     1  2234445665556666 888


Q ss_pred             CccchhHHhhhcch
Q 012286          394 PSSPLVGVLQDHVN  407 (466)
Q Consensus       394 ~~~~~~g~l~~~~g  407 (466)
                      +++.+.|.+.+..|
T Consensus       376 lg~~i~g~iL~~~G  389 (460)
T PRK11462        376 FGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHcC
Confidence            88888888876543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.87  E-value=9.1e-21  Score=172.12  Aligned_cols=371  Identities=14%  Similarity=0.098  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHH--HHH-Hhh
Q 012286            8 ELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT--FAT-AGC   83 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~   83 (466)
                      +..+..-+.....-+..|. +.++.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+..  .+. ...
T Consensus        14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~   93 (412)
T PF01306_consen   14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY   93 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443 445689999999999999999999999999999999997776554433222  122 221


Q ss_pred             hhh----hhHH-HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHH
Q 012286           84 GSS----FDFW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  158 (466)
Q Consensus        84 ~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  158 (466)
                      .+.    .|++ ..+++-+..|+......|+.-+++.++..  +.+.-.|-.-...++|.+++..++|.+.+. +-+..|
T Consensus        94 v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~f  170 (412)
T PF01306_consen   94 VFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIF  170 (412)
T ss_dssp             THHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHH
Confidence            222    2222 23333344455555555666666666543  234556777788889999999999988763 556788


Q ss_pred             HHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhh
Q 012286          159 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  238 (466)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (466)
                      ++....+++..++.++..|+.++.....+..+..                                         +.+..
T Consensus       171 wi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~  209 (412)
T PF01306_consen  171 WIASAAAIILLLLLLLLKPDVPPQAEVADALGAK-----------------------------------------KDKVS  209 (412)
T ss_dssp             HHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC-----------------------------------------CCCCc
Confidence            8777766666655555544422211111100000                                         00000


Q ss_pred             hhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchh---h-HHHhhhhhhccccchhhhhhHhhhccc
Q 012286          239 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD---M-MFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      .++..+++|+|++|.+.+........+..+....|.|....+.....+   . .+.++..+..++...+..++.+|+|.|
T Consensus       210 ~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k  289 (412)
T PF01306_consen  210 LKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK  289 (412)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            234668899999999888777766777777766777777655443221   1 333555677788888999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccC
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  394 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  394 (466)
                           +.++....+..+=.......++.+.....-.+.+.-.........-++.+.+|++..++...+.......+|.++
T Consensus       290 -----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i  364 (412)
T PF01306_consen  290 -----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII  364 (412)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence                 777777777777777777788888888888888888887777788888999999998888888643433338888


Q ss_pred             ccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          395 SSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       395 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      .+.+.|.++|+.| ++..+++.+.+.+...++..
T Consensus       365 ~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~  397 (412)
T PF01306_consen  365 LSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHhe
Confidence            8889999999998 77778777766444444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=6.8e-21  Score=168.87  Aligned_cols=346  Identities=14%  Similarity=0.096  Sum_probs=264.4

Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhhcccCCch-hhHhHHHHHHHHHHhhhhhhh--H-HHHHHHHHHhhhcchhhhcch
Q 012286           35 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFD--F-WSIAICRMLVGVGEASFISLA  110 (466)
Q Consensus        35 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~  110 (466)
                      .+..+...++..+..++.+|..|.++|+.|+|| .+-....+..++..+..++++  + +..++.-++..++.......-
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            345678889999999999999999999999655 555566666666677776654  4 445567788888888888889


Q ss_pred             hhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhh--hh-cc---------------CCcchhHHHHHhHHHHHHHHHHH
Q 012286          111 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GV-VG---------------SHLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus       111 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~-l~---------------~~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      .+++.+..++++-++..++-.....+|..+.-.+.  .. ..               +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999888888777777777776654432  11 11               23457888888888877777777


Q ss_pred             HhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHH
Q 012286          173 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  252 (466)
Q Consensus       173 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (466)
                      ++..|+.++.. .++                                        ++......++.++++++..+++.+.
T Consensus       217 ~~~v~~~~~~~-~~~----------------------------------------~~~l~~g~k~L~~t~k~i~~~~~i~  255 (438)
T COG2270         217 ILNVHDAEKIS-SPP----------------------------------------PTALRNGFKELKSTFKEIRGRKNLV  255 (438)
T ss_pred             Hhccccccccc-ccc----------------------------------------hHHHHHHHHHHHHHHHHHhcccchH
Confidence            76665432211 000                                        0111245666778899999999999


Q ss_pred             HHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHH
Q 012286          253 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  331 (466)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  331 (466)
                      ...++.+++.-+.++...+...|....+|++..+. .+.....+.+++|+++.|++.||++.|     +.+..+..+...
T Consensus       256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~  330 (438)
T COG2270         256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHH
Confidence            99999999998999999999999998999997776 555677899999999999999999999     666666666666


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHH
Q 012286          332 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  411 (466)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  411 (466)
                      .++...+......++++..+.+.+.+..+...-++..+.+|+++.++..|+++...+. +..+||...+.+.+.+|+.+.
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra-~S~~gp~lv~v~t~iTg~~r~  409 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA-ASFLGPFLVAVITQITGSSRA  409 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH-HHHHHHHHHHHHHHHhcchhh
Confidence            6666666666666777777788888888888899999999999999999999888887 889999999999999997776


Q ss_pred             HHHHHHHHHHHHHHHH
Q 012286          412 TTLALTSIFFLAAGIW  427 (466)
Q Consensus       412 ~~~~~~~~~~~~~~~~  427 (466)
                      .+.....+..++..+.
T Consensus       410 g~~~i~vll~iGl~~L  425 (438)
T COG2270         410 GVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHHHhhHhhE
Confidence            6666555544444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=7.7e-21  Score=169.29  Aligned_cols=356  Identities=14%  Similarity=0.107  Sum_probs=254.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh
Q 012286            4 MGVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC   83 (466)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~   83 (466)
                      +.++++++.+++....++++......-|+ +....-|..-+|.+.+....+++-|+.||+|-|...+++..+..+|+.+-
T Consensus        48 l~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir  126 (480)
T KOG2563|consen   48 LAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIR  126 (480)
T ss_pred             HHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHh
Confidence            56788888888888888888888888888 77778899999999999999999999999999999999999999999997


Q ss_pred             hhh------hhHH--HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc---
Q 012286           84 GSS------FDFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---  152 (466)
Q Consensus        84 ~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---  152 (466)
                      ..+      +.++  ....+..+.+.++-.....-..+..-|++++||..+..+-..+..+|.++|.++...+..+-   
T Consensus       127 ~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~  206 (480)
T KOG2563|consen  127 LISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDS  206 (480)
T ss_pred             hhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCc
Confidence            765      3445  67789999999988777766788888999999999999999999999999999988887543   


Q ss_pred             ---chhH--HHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhcccccc
Q 012286          153 ---NWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  227 (466)
Q Consensus       153 ---gwr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (466)
                         .|-.  .|+..+.++.+..++..+..++.++.  ++......                                   
T Consensus       207 ~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~-----------------------------------  249 (480)
T KOG2563|consen  207 EDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA-----------------------------------  249 (480)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh-----------------------------------
Confidence               4654  34544444444444444443332221  11111100                                   


Q ss_pred             ccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhh
Q 012286          228 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFI  307 (466)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  307 (466)
                           ....++.++.+++++++++....+.+......+++..+.+..-+...+-.+........+..++++++.++.|.+
T Consensus       250 -----~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  250 -----LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             -----hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence                 001234568889999999999988888877777777766654444333222233355566778889999999999


Q ss_pred             HhhhcccccchhHHHHHHHHHHHHH-HHHHHH---HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH
Q 012286          308 LDQMGATISNAFKLLSAATFLGAIS-CLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  383 (466)
Q Consensus       308 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  383 (466)
                      .||.+.-+    ............. +.+...   ....+.......+.+++.....|.-.-+..|...|..-++..|+.
T Consensus       325 ~Dktk~fk----~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll  400 (480)
T KOG2563|consen  325 ADKTKKFK----LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLL  400 (480)
T ss_pred             hhhhhhHH----HHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeE
Confidence            99987653    2222222222222 111111   123455566667777777788888888889998898888999999


Q ss_pred             HHHHHhhcccCccchhHHhhhcch
Q 012286          384 TVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       384 ~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +...+.++.. -..+.+...+..+
T Consensus       401 ~~~gq~f~~~-~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  401 NLSGQIFGVI-LVFIMGILAEDLG  423 (480)
T ss_pred             EeehhHHHHH-HHHHHHHHhhccC
Confidence            8888886644 4667777766554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.82  E-value=6.3e-18  Score=155.18  Aligned_cols=336  Identities=10%  Similarity=0.011  Sum_probs=243.2

Q ss_pred             hhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcc----cCC-chhhHhHHHHHHHHHHhhhhhhh------HH
Q 012286           22 FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------FW   90 (466)
Q Consensus        22 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~   90 (466)
                      +++-...+.+|+++..+|.+..+.-+--++.-|+.|.+.||    +|| |+.++.+.+..++.+.++-.+++      ..
T Consensus        34 yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~  113 (467)
T COG2211          34 YLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI  113 (467)
T ss_pred             HHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence            44446677899999999999999999999999999999995    775 45677788999999988887763      44


Q ss_pred             HHHHHHHHhhhcchhhhcchhhhhhccCC-CCCchhHHHHHHhhhhhhhhhhhhhhhhcc-----C--CcchhHHHHHhH
Q 012286           91 SIAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVG-----S--HLNWRYAFWGEA  162 (466)
Q Consensus        91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~--~~gwr~~f~~~~  162 (466)
                      ..++.-++.+++.......-.++.+|+.+ ++||.+..++-+.+.++|..+...+...+.     +  ..||+..-.+.+
T Consensus       114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~  193 (467)
T COG2211         114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG  193 (467)
T ss_pred             HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence            56677888899998888888899999986 578999999999999999766554443332     2  458999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      +++.+..+.+++-..|...+..+.++                                            ....+..+++
T Consensus       194 vi~~i~~l~~~~~v~ER~~~~~~~~~--------------------------------------------~~~~~~~~~~  229 (467)
T COG2211         194 VIGVILLLFCFFNVKERVVETQPTKT--------------------------------------------GVKLKLKDSF  229 (467)
T ss_pred             HHHHHHHHHHHHHhhcccCccccCcc--------------------------------------------cccccHHHHH
Confidence            88888888888776553321111100                                            0001122345


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          243 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      ..+++||.+...++...+.....+........|.+...+.+.... ........+.+++.++..++.+|+|+|     +.
T Consensus       230 ~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~  304 (467)
T COG2211         230 LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KL  304 (467)
T ss_pred             HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HH
Confidence            678899999998888888777777777777777777666664443 333344455566688999999999999     77


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcCccceeeeecccCC-------chhhHHHHHHHHHHHhhcc
Q 012286          322 LSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGD  392 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~  392 (466)
                      ...+.++.++..+..++.+  +.+..++..++.+.+.+...+...+++++.++-       +..|...|....+... |.
T Consensus       305 ~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~-g~  383 (467)
T COG2211         305 FLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL-GL  383 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH-HH
Confidence            7777777777666665554  445555555677777777766666666655431       3456777777666666 88


Q ss_pred             cCccchhHHhhhcch
Q 012286          393 VPSSPLVGVLQDHVN  407 (466)
Q Consensus       393 ~~~~~~~g~l~~~~g  407 (466)
                      +++..+.|++.+..|
T Consensus       384 ala~~~~g~~L~~~G  398 (467)
T COG2211         384 ALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            888888888877655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.80  E-value=1.3e-17  Score=151.66  Aligned_cols=368  Identities=13%  Similarity=0.110  Sum_probs=222.4

Q ss_pred             hcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhh
Q 012286           25 GSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGV  101 (466)
Q Consensus        25 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~  101 (466)
                      -+..+.+|.|+++..-+.+.|..-.-+..+++|+++||+ |+|+++.+|.++..+|.++.+.++  +...++++-.+.++
T Consensus        50 ~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~i  129 (498)
T COG3104          50 YQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIV  129 (498)
T ss_pred             HhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHh
Confidence            344444569999988888888888888999999999997 999999999999999999999984  78899999999999


Q ss_pred             cchhhhcchhhhhhccCCCC--CchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhcccc
Q 012286          102 GEASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  179 (466)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  179 (466)
                      |.|..-|...++++|.+|++  +|...+++++.+.++|..++|.+.+++.+.+||...|.+.++-.....+..+ +.++.
T Consensus       130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~-~~~r~  208 (498)
T COG3104         130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL-LGRRH  208 (498)
T ss_pred             ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-Hccch
Confidence            99999999999999999875  4778999999999999999999999999999999999998876555544443 33443


Q ss_pred             ccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchh-------------hhhhhhh--hhHHh
Q 012286          180 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFL-------------NQLSQFS--QDTKV  244 (466)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~  244 (466)
                      ......++++...............     ........ .......+......             +..+...  +..++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r  282 (498)
T COG3104         209 VKGIGGVPDPNPLSFNFLLPVLGGL-----VVMILAAL-LTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRR  282 (498)
T ss_pred             hcCCCCCCCccchhhhhhhhhHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            3332221211111111000000000     00000000 00000000000000             0000000  01111


Q ss_pred             hhc-hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh-ccccchhhHHHhhhhhhccccchhhhhhHhhhccc---ccchh
Q 012286          245 LLQ-EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGAT---ISNAF  319 (466)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~  319 (466)
                      ++. -+.+....+.+.++......+..|........ ++++.....+-++..+.-++..++..++..|.+++   .+...
T Consensus       283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~  362 (498)
T COG3104         283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPI  362 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcch
Confidence            100 01122222223333333333334443333333 33332233444555666666677777777775544   22233


Q ss_pred             HHHHHHHHHHHHHHHHHHH---H------hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhh
Q 012286          320 KLLSAATFLGAISCLTAFC---L------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF  390 (466)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (466)
                      +.-++..+.+...+++...   .      .+.++.+....+..++--...|...+.+.+..|+...+..+++.. ..+..
T Consensus       363 KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf-Lt~a~  441 (498)
T COG3104         363 KFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF-LTVAA  441 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHH-HHHHH
Confidence            4444444444444443332   1      145667777777777777888888899999999999999998874 34433


Q ss_pred             cccCccchhH
Q 012286          391 GDVPSSPLVG  400 (466)
Q Consensus       391 g~~~~~~~~g  400 (466)
                      |..++..+.+
T Consensus       442 ~~~l~g~va~  451 (498)
T COG3104         442 GQTLGGQVAG  451 (498)
T ss_pred             HHHhhceecc
Confidence            6665555554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.75  E-value=8.2e-16  Score=137.33  Aligned_cols=330  Identities=12%  Similarity=0.030  Sum_probs=223.2

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccC-----CchhhHh-HHHHHHHHHHhhhhh-----h-------
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLIGV-GLSVWTFATAGCGSS-----F-------   87 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------   87 (466)
                      -|..|++++..-.+.+.++..+.. ...+.+|+.+|+.+     ||...++ |.++...+..+..++     .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            356789999988899888887766 46899999999998     7765554 566666655554432     2       


Q ss_pred             h--HH--HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           88 D--FW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        88 ~--~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                      +  .+  ...+.-.+.|+|.+...+...++++|..|+|+|+++.++...+..+|.+++..+.+.+.+.+.-.-..-+...
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            1  22  2345678899999999999999999999999999999999999999999999999988877653322222222


Q ss_pred             HHHHHHHHHHhhc--cccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhh
Q 012286          164 LMLPFAVLAFVIK--PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  241 (466)
Q Consensus       164 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (466)
                      .+++..++...-+  .|.+.....+.++                                           ++..++.+.
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~~~~~-------------------------------------------~~~~~f~~a  200 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRAAAAE-------------------------------------------RPRPPFREA  200 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccccCCC-------------------------------------------CCCccHHHH
Confidence            2222222222211  1211110000000                                           011122345


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchh
Q 012286          242 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAF  319 (466)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~  319 (466)
                      ++++..+|+.....+..++....++.-...+-.|--+.++++..+. .+......+..+|....|++..| .+++     
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----  275 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----  275 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----
Confidence            6777788888887777777777776667777778888999997655 66677778888888888887764 3332     


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          320 KLLSAATFLGAISC---LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       320 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                      +....++..+...+   +......+.+.+....++.|++.+.......+.+.+...+++.|..+|.-...... +..++.
T Consensus       276 ~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~-A~Glg~  354 (403)
T PF03209_consen  276 RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI-ARGLGT  354 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH-HHHHHH
Confidence            33323333333332   22333446777778888888888877777777888888889999999988655544 777778


Q ss_pred             chhHHhhhc
Q 012286          397 PLVGVLQDH  405 (466)
Q Consensus       397 ~~~g~l~~~  405 (466)
                      .+.|.+.|.
T Consensus       355 ~~GG~~~D~  363 (403)
T PF03209_consen  355 FLGGALRDL  363 (403)
T ss_pred             HHHHHHHHH
Confidence            788888764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.70  E-value=1.6e-15  Score=141.95  Aligned_cols=317  Identities=13%  Similarity=0.096  Sum_probs=214.5

Q ss_pred             HHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc--chhhhcchhhhhhccCCCCC
Q 012286           45 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG--EASFISLAAPFIDDNAPVPQ  122 (466)
Q Consensus        45 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~  122 (466)
                      ..+...+.++..|.++||+|||..+.+......+..+...+..  |++++   +.|+.  .+.......++++|....++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhH
Confidence            3677788999999999999999999999999988888877766  33333   44443  33566778899999999999


Q ss_pred             chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCc-cccccccccccccc
Q 012286          123 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE-SGKAQVVASVSEGS  201 (466)
Q Consensus       123 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~  201 (466)
                      |...+++.......+..++|.+++.+....|.-..|.+..+..++..+...+.+||+..+..+++ ..+..         
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~---------  216 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL---------  216 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc---------
Confidence            99999999999999999999999999999999999999999999999998888898765533221 00000         


Q ss_pred             cccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHH-hhhhHhhhhhhhhhhc
Q 012286          202 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV-IGAYSYWGPKAGYNIY  280 (466)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  280 (466)
                      .....           ..             ....+..+..++.-.+|..+.+.+..+..... .....-..+.|+...+
T Consensus       217 ~~~~~-----------~~-------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f  272 (463)
T KOG2816|consen  217 TPGSL-----------DS-------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKF  272 (463)
T ss_pred             CCCcc-----------cc-------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeec
Confidence            00000           00             00011111222222334444444443333332 2223324477888889


Q ss_pred             cccchhh-HHHhhhhhhccccchhhh-hhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012286          281 HMSNADM-MFGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  358 (466)
Q Consensus       281 ~~~~~~~-~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (466)
                      ++++... .+.+.......++.++.. .+...++.+     +.+..+...-........+....|..... .....+...
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~-~v~~~~~~~  346 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAA-GVVVALAGI  346 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHH-HHHHHhhcc
Confidence            9997665 355566666667777666 667777777     54444444444444444444444544333 333344456


Q ss_pred             cCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          359 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      ..+...+.....+.++++|++.++....... ...++|.+.+.+...+
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l-~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGL-SGVVSPALYGNIFALT  393 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHH-hhhhhHHHHHHHHHHH
Confidence            6677778888888999999999999776666 8888999988886544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=7.6e-17  Score=128.58  Aligned_cols=138  Identities=29%  Similarity=0.388  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCC
Q 012286           41 LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  120 (466)
Q Consensus        41 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  120 (466)
                      +.+.+.++..+++++.|++.||+|||+.+..+..+..++.+....+++++.+.+.+++.|++.+...+...+++.|.+|+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286          121 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus       121 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      ++|++..++.+....+|..++|.+++.+.+..+|++.|++.+...++..+..++..||
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999998999999999988877777776666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.64  E-value=1.3e-15  Score=143.74  Aligned_cols=348  Identities=14%  Similarity=0.071  Sum_probs=212.8

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-----CCchhhHhHHHHHHHHHHhhhhh----hhHHH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRLIGVGLSVWTFATAGCGSS----FDFWS   91 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~   91 (466)
                      ....|.+++++|+++++.....+...+...+ -++.|.++|.+     .||+-++++.++..++.+..+..    .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3466788999999999999988888887754 67779999986     25556667777776655555543    35666


Q ss_pred             HHHHHHHhhhcchhhhcchhhhhhccCC--CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHH
Q 012286           92 IAICRMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        92 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      ..+.-++..+|.+.....+-+++.|...  +++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            7777788889999999999999999874  33478888999999999999999999999999999999999988888777


Q ss_pred             HHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchh
Q 012286          170 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  249 (466)
Q Consensus       170 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (466)
                      +..+++.+| .+.++..+.....                   ++..             .......++..+..++.++.|
T Consensus       169 ~~~~~~~~e-~~~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~~~~~l~~~~~~~  215 (433)
T PF03092_consen  169 IVALFLLEE-RKVRPADEVFSFG-------------------KEEV-------------PCLFGSFREQLSELWRALQQR  215 (433)
T ss_pred             HHHHHhhhh-ccccccchhhccc-------------------cccc-------------chhhHHHHHHHHHHHHHHhhh
Confidence            777766555 1111110000000                   0000             000011233345566777778


Q ss_pred             HHHHHHH-HHHHHHHHhhhhHhhhhhhhhhhcc---ccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHH
Q 012286          250 VYVVNVL-GYIAYNFVIGAYSYWGPKAGYNIYH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  325 (466)
Q Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  325 (466)
                      .++...+ ..++............-.+..+..+   +++..  +..+. +.+.++.+++..+.+++.++.+ .|+++...
T Consensus       216 ~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f--~~~~~-~vg~~~~l~g~~~y~~~~~~~~-~R~~~~~t  291 (433)
T PF03092_consen  216 AIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSF--YGTLS-IVGSIASLLGILLYRKYFSNWS-WRRIFVVT  291 (433)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHH--HHHHH-HHHHHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            7777665 3333322211111100001112222   34322  22222 3333444555555555544332 22555444


Q ss_pred             HHHHHHHHHHHH-H---------HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCc
Q 012286          326 TFLGAISCLTAF-C---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  395 (466)
Q Consensus       326 ~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~  395 (466)
                      .++.+...+.-. .         .++.+..+.--.+........+-|.....++..|+..-|+..++.....+. |..++
T Consensus       292 ~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nl-g~~~s  370 (433)
T PF03092_consen  292 TLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNL-GSSVS  370 (433)
T ss_pred             HHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HHHHH
Confidence            444433322111 0         111122233334444445555556677788999999999999999888888 88878


Q ss_pred             cchhHHhhhcch
Q 012286          396 SPLVGVLQDHVN  407 (466)
Q Consensus       396 ~~~~g~l~~~~g  407 (466)
                      ..++..+.+..+
T Consensus       371 ~~lg~~l~~~~~  382 (433)
T PF03092_consen  371 STLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHcC
Confidence            877777766554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=2e-15  Score=142.91  Aligned_cols=145  Identities=16%  Similarity=0.216  Sum_probs=128.0

Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh----hHHHHHHHHHHhhhcchhhhcchh
Q 012286           36 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAA  111 (466)
Q Consensus        36 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~  111 (466)
                      ++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999988877666632    346678899999999998889889


Q ss_pred             hhhhccCCCCCchhHHHHHH-hhhhhhhhhhhhhhhhccCC------cchhHHHHHhHHHHHHHHHHHHhhccccc
Q 012286          112 PFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       112 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      .++.|++|+++|++++++.+ ....+|.++||.++|.+.++      +|||..|.+.+++.++..++.+++.||+.
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999997 67889999999999999876      46999999999998888888888887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.63  E-value=3.1e-15  Score=137.87  Aligned_cols=172  Identities=15%  Similarity=0.144  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhh-hhhcccc-cccccccchhHHHHHHHHHHHhhhhhhhhhhcccCC-chhhHhHHHHHHHHHHhh-hh
Q 012286           10 AMIKEYVLLVAGF-IHGSCRG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGC-GS   85 (466)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~   85 (466)
                      +++.+.+..++.+ ..|.+++ |.+.+.+..|++.++..++.+++++..|....|.+. |+.++.|.++..++.++. ++
T Consensus        43 sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l  122 (488)
T KOG2325|consen   43 SFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLAL  122 (488)
T ss_pred             HHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            3444444433322 3334443 577788889999999999999999999999999986 889999999999999997 33


Q ss_pred             h---h-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC----------
Q 012286           86 S---F-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------  151 (466)
Q Consensus        86 ~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------  151 (466)
                      .   + .-+.++++|++.|+|.+ ......+|+++....++|.++++....+..+|.++||.++..+..-          
T Consensus       123 ~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~  201 (488)
T KOG2325|consen  123 AYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPG  201 (488)
T ss_pred             HhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCc
Confidence            2   3 67889999999999987 4556899999998889999999999999999999999887665421          


Q ss_pred             c---chhHHHHHhHHHHHHHHHHHHhhccccccC
Q 012286          152 L---NWRYAFWGEAILMLPFAVLAFVIKPLQLKG  182 (466)
Q Consensus       152 ~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  182 (466)
                      .   -+..+-|+.+++.++..+..+++..|..++
T Consensus       202 ~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  202 LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             ceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            1   145677788888888888777777664443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.61  E-value=8.9e-14  Score=125.99  Aligned_cols=358  Identities=11%  Similarity=0.010  Sum_probs=233.1

Q ss_pred             hhhhccccc-ccccccchh-HHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 012286           22 FIHGSCRGD-FKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV   99 (466)
Q Consensus        22 ~~~~~i~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   99 (466)
                      ++.|.+.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+.++...+-+..+.-
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY  104 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            455556664 889888874 556677778888999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC--CcchhHHHHHhHHHHHHHHHHHHhhcc
Q 012286          100 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKP  177 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p  177 (466)
                      |++.+. ..+-++++-...|+++-.++.+...++.-+|..++.++|..+..  ..+++....+......+..+..++ +|
T Consensus       105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f-LP  182 (412)
T PF01770_consen  105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF-LP  182 (412)
T ss_pred             HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            999985 56788999999999999999999999999999999999987775  345666666555444444444444 45


Q ss_pred             ccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHH
Q 012286          178 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  257 (466)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (466)
                      ..++..--.++.+....   ..+.+.++.    ++..++..+.++.++..........+..++.+++..++|.++...+-
T Consensus       183 ~~~~S~~f~r~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlW  255 (412)
T PF01770_consen  183 MPKRSLFFHRKPPAEQD---ANESESDKM----NESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLW  255 (412)
T ss_pred             CCCcccceeccCccccc---ccccccccc----ccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            43322110000000000   000000000    00000000001111111111224456778888899999999999998


Q ss_pred             HHHHHHHhhhhHhhhhhhhhhhccccch---hhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH
Q 012286          258 YIAYNFVIGAYSYWGPKAGYNIYHMSNA---DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  334 (466)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      +.+...++.-+.+|....-++....+..   ....-+...+.+.++.+..|++-.+..+..   ...+.....+.+..++
T Consensus       256 Wa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~---~l~l~~~S~l~a~~L~  332 (412)
T PF01770_consen  256 WAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG---ELALGVFSLLQAGLLF  332 (412)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH---HHHHHHHHHHHHHHHH
Confidence            8888888888888877766665111111   123334555666667777777733333321   0333444555566666


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhc
Q 012286          335 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  391 (466)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  391 (466)
                      ++...++.|...+..++.........+....-++.....|.-|...|+.+...-.+-
T Consensus       333 lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ  389 (412)
T PF01770_consen  333 LMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ  389 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence            667777888887777777777766666666666666767777888887765544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=1.2e-14  Score=140.78  Aligned_cols=160  Identities=11%  Similarity=0.015  Sum_probs=121.4

Q ss_pred             hhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHh---hhhhhhHHHHHHHHH
Q 012286           22 FIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRM   97 (466)
Q Consensus        22 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~   97 (466)
                      ...|. +++++|.+..+.++..+...++..++.+..|+++||+|||+.+..+.++..++.+.   ...+++...++++|+
T Consensus       271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (490)
T PRK10642        271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL  350 (490)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            34454 44678888888888888889999999999999999999999988887654443332   223456778888999


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHHHHHHHHHHhhc
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      +.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+.. +|+.+++...+.+++..+..+ +.
T Consensus       351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  429 (490)
T PRK10642        351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hh
Confidence            9998877777778889999999999999999754445556678888888887654 478887777766666555544 44


Q ss_pred             cccccC
Q 012286          177 PLQLKG  182 (466)
Q Consensus       177 p~~~~~  182 (466)
                      ||++++
T Consensus       430 pes~~~  435 (490)
T PRK10642        430 KETANR  435 (490)
T ss_pred             ccccCC
Confidence            887765

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.55  E-value=2.7e-14  Score=136.03  Aligned_cols=148  Identities=10%  Similarity=0.042  Sum_probs=130.9

Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcc
Q 012286           30 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  109 (466)
Q Consensus        30 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  109 (466)
                      +.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++..+.+++++.+.+++.+++.|++.+...+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34666778899999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhhhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhcc
Q 012286          110 AAPFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  177 (466)
Q Consensus       110 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  177 (466)
                      ...++.|.+|++.|+...+. ++....+|.+++|.+.|++.+..|||..|...+++.++..++.++..+
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999887655 677788999999999999999999999999998888777666665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=6.1e-14  Score=132.80  Aligned_cols=151  Identities=16%  Similarity=0.117  Sum_probs=130.3

Q ss_pred             hhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcc
Q 012286           24 HGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  103 (466)
Q Consensus        24 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  103 (466)
                      .|...++.|.  .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  316 (399)
T PRK05122        239 ITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGF  316 (399)
T ss_pred             HHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhH
Confidence            3433344555  34567778889999999999999999999999999999998888888888888888889999999999


Q ss_pred             hhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286          104 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus       104 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      +...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..||+..|++.+++.++..+..+++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        317 SLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888888888899999999999999999999999999999999999989999999999888777766666553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=5.6e-14  Score=130.63  Aligned_cols=164  Identities=17%  Similarity=0.125  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHhhhhhcccccc-cccccchhHHHHHHHHHHHhhhhhhhhhhcccCCch-hhHhHHHHHHHHHHhhhhhh
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDF-KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSF   87 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~   87 (466)
                      .+.............|.+.++. |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444555566555554 899999999999999999999999999999999999 99999999999999999999


Q ss_pred             hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHH
Q 012286           88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  167 (466)
Q Consensus        88 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  167 (466)
                      +.+.+.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999989999999999988877


Q ss_pred             HHHHHH
Q 012286          168 FAVLAF  173 (466)
Q Consensus       168 ~~~~~~  173 (466)
                      ..+..+
T Consensus       344 ~~i~~~  349 (352)
T cd06174         344 AALLLL  349 (352)
T ss_pred             HHHHhe
Confidence            766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=1.4e-13  Score=129.77  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=127.1

Q ss_pred             hhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 012286           23 IHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  101 (466)
Q Consensus        23 ~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  101 (466)
                      ..| .+++++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+++.++
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  317 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI  317 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344 4567789999999999888888888899999999999999998887776666655555567788888889999988


Q ss_pred             cchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          102 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +.+...+....+..|..|+ +|+++.++++...++|..+||.+++.+.++.||+..|++.+++.++..++.++.
T Consensus       318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8887777778888999886 599999999999999999999999999998999999998887777666555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.52  E-value=5.4e-14  Score=132.15  Aligned_cols=146  Identities=12%  Similarity=0.022  Sum_probs=127.5

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH--HHHHHHHHHhh
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVG  100 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G  100 (466)
                      ..+.+.++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.++..++.++..+.++.  ..++...++.|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF  306 (377)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence            3445567888888889999999999999999999999999999999999999998888887776643  33456678888


Q ss_pred             hcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286          101 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      ++.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888888888999999999999999999999999999999999999999999999999988766554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.52  E-value=1.4e-12  Score=114.97  Aligned_cols=236  Identities=13%  Similarity=0.111  Sum_probs=155.1

Q ss_pred             ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhh
Q 012286           27 CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  106 (466)
Q Consensus        27 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  106 (466)
                      +-+++|.+..|++.+....+....+..++.|.++||+|||+.-+.-+++++++++ +-..++++.++++|++.|++....
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999999999999999886 456689999999999999999988


Q ss_pred             hcchhhhh-hccC----CCCCchhHHHHHH-hhhhhhhhhhhhhhhhccCCcch--hHHHHHhHHHHHHHHHHHHhhccc
Q 012286          107 ISLAAPFI-DDNA----PVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus       107 ~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      +.+--+++ .|.-    |++..+.-++... ..+++-.+.+..++.++.+..+.  ..+|.....+.++..++.....+|
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            87776655 3432    2222233333222 22333344455555566655443  788888877777666665544444


Q ss_pred             cccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHH
Q 012286          179 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  258 (466)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (466)
                      ...+   +++.+                                          +..++..+.++.+.++|+++.+.+..
T Consensus       219 Nyg~---~~~~~------------------------------------------~~~~~~~~a~~~i~~d~ril~LG~~q  253 (354)
T PF05631_consen  219 NYGD---TSSSS------------------------------------------SLSGSFREAWRAILSDPRILLLGLIQ  253 (354)
T ss_pred             cCCC---ccccc------------------------------------------chHHHHHHHHHHHHcCchhHHHHHHH
Confidence            3211   11110                                          01112234566777889998888887


Q ss_pred             HHHHHHhhhhH-hhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhh
Q 012286          259 IAYNFVIGAYS-YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQ  310 (466)
Q Consensus       259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  310 (466)
                      .++-...+.+. .|.|..-.+..+. |.. .+.+...++.++|+.+..++..+
T Consensus       254 slFE~smy~FVflWtPaL~~~~~~~-P~G-lIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  254 SLFEGSMYLFVFLWTPALDPDDEEL-PLG-LIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHHheeeeeceecCCCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            77766665554 5777766221111 222 33334456666677666555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.51  E-value=1.9e-13  Score=129.99  Aligned_cols=139  Identities=17%  Similarity=0.190  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhcc
Q 012286           38 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  117 (466)
Q Consensus        38 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  117 (466)
                      .+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...|...+++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888889999999999999999999999998888888888888889999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286          118 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus       118 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      .|+++|++.+++.+....+|..+||.+++.+.+..||+..|++.+++.++..++.++..
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888777766554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=2.2e-13  Score=129.66  Aligned_cols=159  Identities=17%  Similarity=0.095  Sum_probs=139.7

Q ss_pred             hhhhccccc-ccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 012286           22 FIHGSCRGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG  100 (466)
Q Consensus        22 ~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  100 (466)
                      ...|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|
T Consensus       244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (417)
T PRK10489        244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG  323 (417)
T ss_pred             HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            345555555 8999999999999999999999999999999988888888888888888888888888888888999999


Q ss_pred             hcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccc
Q 012286          101 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      ++.+...+...+++.|..|+++|++++++++....+|..+||.+.|.+.+..|++..++..+...++..++.+...|+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            99888778788999999999999999999999999999999999999999999999999888887777777776666543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.51  E-value=5.5e-14  Score=139.39  Aligned_cols=140  Identities=9%  Similarity=-0.040  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccC
Q 012286           39 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  118 (466)
Q Consensus        39 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  118 (466)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44466778999999999999999999999999999999999999999988888888999999888888999999999999


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccc
Q 012286          119 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      |.++|++++|+.+....+|.++||.+++.+.+. +...+|++.+++.++..++.++ +||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            999999999999999999999999999887764 4567888888777666665554 47754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=4.4e-14  Score=135.46  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=124.2

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHh--HHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRML   98 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l   98 (466)
                      .+|.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.++...+++++.+++.+++
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~  342 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF  342 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44555677899999999999999999999999999999984  33433333  344445555666778899999999999


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHHHHHHH
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  170 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~  170 (466)
                      .|++.+...+...+++.|.+|++++++.+++++....+|..+||.++|.+.+.. +|++.|++.+++.++..+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999877 599999999887665544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.50  E-value=1.9e-13  Score=133.36  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=116.7

Q ss_pred             hhhhccc-ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh--hhHHHHHHHHHH
Q 012286           22 FIHGSCR-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRML   98 (466)
Q Consensus        22 ~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l   98 (466)
                      ..+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+..++
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF  375 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3455555 6899999999999999999999999999999999999999988877766665544332  344445455555


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      .+.......+..+.++.|.+|+++|++.+++.+....+|..+||.+++.+.+..||+..+...+....+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~  445 (496)
T PRK03893        376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV  445 (496)
T ss_pred             HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            5443334456677899999999999999999999999999999999999999999998887666544433

>PRK12382 putative transporter; Provisional

Probab=99.50  E-value=1.9e-13  Score=129.02  Aligned_cols=150  Identities=12%  Similarity=0.081  Sum_probs=130.4

Q ss_pred             hhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcc
Q 012286           24 HGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  103 (466)
Q Consensus        24 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  103 (466)
                      .|...++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++.+.+++.+++.|++.
T Consensus       239 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  316 (392)
T PRK12382        239 VSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGC  316 (392)
T ss_pred             HHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            33344455554  3566677788888999999999999999999999999999999888888888888888999999999


Q ss_pred             hhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          104 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       104 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +...+...+.+.|.+|+++|+++.++++....+|..+||.+.+.+.++.||+..|.+.+++.++..++.++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        317 SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            988888888999999999999999999999999999999999999999999999999998887777666544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=4.7e-13  Score=127.10  Aligned_cols=153  Identities=14%  Similarity=0.043  Sum_probs=129.9

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  102 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  102 (466)
                      ..|.+.++.|.++.+.+...+.+.++..++.++.|++.||+|||+.+..+.....++.++..+.++.+.+.+..++.|++
T Consensus       242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            45667778899999999999999999999999999999999999999887777777777777778888888888889988


Q ss_pred             chhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHHHHHHHHHHhh
Q 012286          103 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       103 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      .+...+...+++.|.+|+++|++.+++.+....+|..+||.+++.+.++. +|...++......++..+..++.
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88788888999999999999999999999999999999999999998865 46666666666555555554444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.46  E-value=7.1e-13  Score=124.48  Aligned_cols=147  Identities=14%  Similarity=0.040  Sum_probs=131.9

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  102 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  102 (466)
                      ..|...+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.+...+..++.++++|.+.+++.+++.|+.
T Consensus       227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~  306 (382)
T TIGR00902       227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT  306 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            44444567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcchhhhhhccCCCCCchhHHHHHH-hhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHH
Q 012286          103 EASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  171 (466)
Q Consensus       103 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  171 (466)
                      .+...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.+++|+ ..|+..+.++++..++
T Consensus       307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            999999999999998 9989999999986 57889999999999999999996 6677777776654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=1.7e-12  Score=122.38  Aligned_cols=154  Identities=16%  Similarity=0.168  Sum_probs=126.8

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH-hhhhhhhHHHHHHHHHHh
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-GCGSSFDFWSIAICRMLV   99 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~   99 (466)
                      +...|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++.. +....++.+.+.+..++.
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            4445556667899999999999999999999999999999999988754 44444444433 345567788888899999


Q ss_pred             hhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhc
Q 012286          100 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      |++.+...+...+.+.|..| ++|++++++++....+|..+||.++|.+.+++|+|..|+..+++.++..+..+...
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99887777777888888876 57899999999999999999999999999999999999999988877777766554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=8e-13  Score=127.52  Aligned_cols=156  Identities=12%  Similarity=-0.009  Sum_probs=119.4

Q ss_pred             Hhhhhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHh--hhhhhhHHHHHHHH
Q 012286           20 AGFIHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG--CGSSFDFWSIAICR   96 (466)
Q Consensus        20 ~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r   96 (466)
                      .....| .+++++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+  ....++.+.+.+.+
T Consensus       277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T PRK09556        277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASL  356 (467)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            334455 456789999999999999999999999999999999999999877655444443322  22345666777888


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhh-hhhhhhhhhhhccC------------CcchhHHHHHhHH
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEAI  163 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~gwr~~f~~~~~  163 (466)
                      ++.|+..............|.+|+++|+++.|+.+....+ |..++|.+.|.+.+            ..+|+..|++..+
T Consensus       357 ~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~  436 (467)
T PRK09556        357 FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDI  436 (467)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHH
Confidence            8888654333333346677999999999999999988886 77999999999998            5789999999877


Q ss_pred             HHHHHHHHHHhh
Q 012286          164 LMLPFAVLAFVI  175 (466)
Q Consensus       164 ~~~~~~~~~~~~  175 (466)
                      ..++..+..++.
T Consensus       437 ~~~~~~~~~~~~  448 (467)
T PRK09556        437 AAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            777665555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.43  E-value=1.4e-12  Score=122.47  Aligned_cols=147  Identities=11%  Similarity=0.143  Sum_probs=126.8

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchh
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  105 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  105 (466)
                      .+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+..+...+.++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577899999999988888878888899999999999999999888877766666666778888888899999999988


Q ss_pred             hhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHH
Q 012286          106 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus       106 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  173 (466)
                      ..+....++.|..|++ |+++.++++....+|..++|.+++.+.+..||+..|++.+++.++..++..
T Consensus       305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            8888889999998764 679999999999999999999999999989999999999887776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.43  E-value=6.4e-13  Score=129.19  Aligned_cols=159  Identities=7%  Similarity=-0.086  Sum_probs=127.2

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-----h------hH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----F------DF   89 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~   89 (466)
                      ....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++.++.     +      +.
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN  383 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence            345567778889999888999999999999999999999999999999999988888877776621     1      23


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      ..+....++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+.++.+|++.|++.++++++..
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  463 (481)
T TIGR00879       384 VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL  463 (481)
T ss_pred             HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence            33333333333333334566778889999999999999999999999999999999999988899999999998888887


Q ss_pred             HHHHhhcccc
Q 012286          170 VLAFVIKPLQ  179 (466)
Q Consensus       170 ~~~~~~~p~~  179 (466)
                      ++.+++.||+
T Consensus       464 i~~~~~~~~~  473 (481)
T TIGR00879       464 IFVYFFLPET  473 (481)
T ss_pred             HHHheecccC
Confidence            7777666654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.43  E-value=2.2e-12  Score=123.82  Aligned_cols=157  Identities=19%  Similarity=0.194  Sum_probs=140.4

Q ss_pred             HHhhhhhccc-ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012286           19 VAGFIHGSCR-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM   97 (466)
Q Consensus        19 ~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   97 (466)
                      .+..++|.+. +++|.++..+|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.+..++.-+
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~  315 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF  315 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344667665 568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +.|++.....+...+.+.+..|++.|||.+++++.....+..+|..+.|.+.+.+|-+..+.+.++..++..++.+..
T Consensus       316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988888999999999999999999999999999999999999999999999999988877655555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=1.7e-12  Score=122.02  Aligned_cols=147  Identities=10%  Similarity=0.078  Sum_probs=123.3

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  102 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  102 (466)
                      .+|...++.|.++++.+++.+...++..+++++.|++.||+|+|+.+..+..+..++.+...  + ........++.|++
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~  298 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA  298 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence            45666667899999999999999999999999999999999999999988888877665543  2 23444577888887


Q ss_pred             chhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHH
Q 012286          103 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus       103 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      .....|...+.+.|..|+++++...+.+....++|..+||.++|++.++.||++.|.+.+.+.++..+..
T Consensus       299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            7778899999999999988888888888889999999999999999999999999999887776554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=1.8e-12  Score=122.20  Aligned_cols=160  Identities=11%  Similarity=0.091  Sum_probs=126.8

Q ss_pred             HhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-hhHHHHHHHHHH
Q 012286           20 AGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRML   98 (466)
Q Consensus        20 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l   98 (466)
                      .....|.+.+++|.+..+.|...+.+.++..++.+..|++.||+|||+.+..+..+..++.++.... ++...+.  -++
T Consensus       224 ~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l  301 (393)
T PRK09705        224 LIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMV  301 (393)
T ss_pred             HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHH
Confidence            3334555556789999999999999999999999999999999999999999888877776655432 2322222  346


Q ss_pred             hhhcchhhhcchhhhhhccCC-CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHHHHHHHHHHHhhc
Q 012286           99 VGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIK  176 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~  176 (466)
                      .|++.+...|.......+..+ +++|++..++.+....++..++|.+.+++.+..| |+..|.+.++.+++..+....+.
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            688888788877777777775 5689999999999999999999999999999876 88888888888777776666666


Q ss_pred             ccccc
Q 012286          177 PLQLK  181 (466)
Q Consensus       177 p~~~~  181 (466)
                      ||+..
T Consensus       382 ~~~~~  386 (393)
T PRK09705        382 PARFP  386 (393)
T ss_pred             ccccc
Confidence            76543

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=4.9e-12  Score=119.69  Aligned_cols=159  Identities=15%  Similarity=0.069  Sum_probs=124.5

Q ss_pred             HHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhH-hHHHHHHHHHHhhhh-----hhh
Q 012286           15 YVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGS-----SFD   88 (466)
Q Consensus        15 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~   88 (466)
                      ..........|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+....     .++
T Consensus       236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            33344445567777889999999999999999999999999999999999988764 333334443333322     245


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      .+.+++..++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+..||+..|++.+++.++.
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~  393 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS  393 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            67777888999988876655 4566777655 579999999999999999999999999999999999999999888777


Q ss_pred             HHHHHhh
Q 012286          169 AVLAFVI  175 (466)
Q Consensus       169 ~~~~~~~  175 (466)
                      .++..+.
T Consensus       394 ~~~~~~~  400 (402)
T TIGR00897       394 AFLTAFI  400 (402)
T ss_pred             HHHHHHh
Confidence            7666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10054 putative transporter; Provisional

Probab=99.40  E-value=3.7e-12  Score=120.00  Aligned_cols=167  Identities=10%  Similarity=0.018  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      +.++.+.+..++.....+....++|.|+++.+|.++.+. ...+...+..+++.++.|+++||++||     +.+..+..
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----~~~~~~~~   81 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK-----RYMLLAIT   81 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHHH
Confidence            456666777788888888888999999998889887665 444566778888899999999999998     66655555


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      ...+..+.....++.+..+....+.+...+...+.......+..|+++|+++.|+.+...+. |.+++|.+.+.+.+ .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l~~-~g  159 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLLVM-QS  159 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hc
Confidence            55555555555556555555444555554455555667778888889999999999888887 88999999998875 34


Q ss_pred             hhHHHHHHHHHHHHHH
Q 012286          408 NWRKTTLALTSIFFLA  423 (466)
Q Consensus       408 ~~~~~~~~~~~~~~~~  423 (466)
                       |+..|...+.+.++.
T Consensus       160 -~~~~f~~~~~~~~i~  174 (395)
T PRK10054        160 -INLPFWLAAICSAFP  174 (395)
T ss_pred             -cCcHHHHHHHHHHHH
Confidence             777777665554443

>PRK03699 putative transporter; Provisional

Probab=99.40  E-value=2.3e-12  Score=121.66  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             Hhhhhhcc-cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012286           20 AGFIHGSC-RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML   98 (466)
Q Consensus        20 ~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l   98 (466)
                      +....|.+ ++++|.|..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            33445544 46789999999999999999999999999999999999999998888777777777777788777778889


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      .|++.+..++...++..|..|+ ++++..+.......+|..++|.+.+.+.+..||+..++..+++.++..+.+...
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            9998888888888888887764 467888999999999999999999999999999999999988877776554444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=2.1e-12  Score=125.53  Aligned_cols=159  Identities=8%  Similarity=-0.041  Sum_probs=122.6

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh--hH-H-HHHHHH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DF-W-SIAICR   96 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r   96 (466)
                      .+..|.+.+++|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.++.+...  +. + ....+-
T Consensus       291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~  370 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM  370 (479)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3455778788898887777877788888999999999999999999999999999988887766442  11 1 222333


Q ss_pred             HHhhhcchh-hhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhh------hccCCcchhHHHHHhHHHHHHHH
Q 012286           97 MLVGVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG------VVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        97 ~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~------~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      ++.+.+.+. ..|....++.|.+|+++|++++++.+....+|..+++.+.+      ++.+..+|++.|++.++++++..
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (479)
T PRK10077        371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA  450 (479)
T ss_pred             HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence            444444433 33677899999999999999999999999999888865544      44567889999999998888877


Q ss_pred             HHHHhhcccc
Q 012286          170 VLAFVIKPLQ  179 (466)
Q Consensus       170 ~~~~~~~p~~  179 (466)
                      ++.+++.||+
T Consensus       451 ~~~~~~~~e~  460 (479)
T PRK10077        451 LFMWKFVPET  460 (479)
T ss_pred             HHHHhccccC
Confidence            7777666764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.38  E-value=7.2e-12  Score=119.74  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      +.++...+.+++..........+.|.+.++ +|.++.+. ...+...++..++.++.|++.||+|+|     +.+..+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR-----YFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc-----hhHHHHHH
Confidence            334444555555555555667778887776 77776554 555677888899999999999999998     66766666


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +..+..++....++.+...+..++.+++.+...+.....+.+.+|+++|++++|+.+...+. |.+++|.+.+.+.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV-GGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            66666666555666666666666677777777777788888888889999999999877777 88999999999998876


Q ss_pred             hhHHHHHHHHHHHHHH
Q 012286          408 NWRKTTLALTSIFFLA  423 (466)
Q Consensus       408 ~~~~~~~~~~~~~~~~  423 (466)
                       |+..+.+.+...++.
T Consensus       176 -w~~~f~~~~i~~~~~  190 (434)
T PRK11663        176 -WRYGMMIAGIIAIVV  190 (434)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             888887765544333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.37  E-value=4e-12  Score=116.41  Aligned_cols=188  Identities=10%  Similarity=0.007  Sum_probs=138.8

Q ss_pred             hhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccc
Q 012286          238 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISN  317 (466)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  317 (466)
                      .+....+++.+++...+++...+...+.....+++=-++++..+.+............+.++.-++.+++.+|+|+-   
T Consensus       360 v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv---  436 (618)
T KOG3762|consen  360 VLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV---  436 (618)
T ss_pred             HHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc---
Confidence            34444466777776666666666666666666666556777655443222334555667788888899999999998   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccc
Q 012286          318 AFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  397 (466)
                        +++..+..+...=++......++|..+.+=.+-+...+..+....+++....||+.+.++.++.......+|-.+|.+
T Consensus       437 --~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl  514 (618)
T KOG3762|consen  437 --NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL  514 (618)
T ss_pred             --ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence              677677666677677777778888888888899999999999899999999999999999999988887779999999


Q ss_pred             hhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012286          398 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       398 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      ++|.+.+.+| -...|..+++.+++..+......
T Consensus       515 IGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  515 IGGFVVERFG-ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999988 44566665555555554444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.36  E-value=4.2e-12  Score=113.38  Aligned_cols=173  Identities=17%  Similarity=0.181  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      .+.+....+.+..++..-..+..-.|...++ .+++..+. .+.+...+...++.++.|.++||.+.|     ..+..+.
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr-----~fm~~gL  101 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR-----YFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----eeehHHH
Confidence            3455566666777777766667767766655 55776665 566788899999999999999999999     8888888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh--HHhhh
Q 012286          327 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV--GVLQD  404 (466)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--g~l~~  404 (466)
                      +++++..+++.+.++.+.+.++..+.+.+.+..+|+....+.+-+++++||+..++-|+..++ |+.+.|++.  +.+.+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi-GGal~~~~~~la~~~~  180 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI-GGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc-ccchHHHHHHHHHHHh
Confidence            888888888888889999999999999999999999999999999999999999999999999 778788888  88888


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH
Q 012286          405 HVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       405 ~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +. +|+..|++-+++.++..++.+
T Consensus       181 ~~-~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         181 HG-GWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             cc-chhHHHHHHHHHHHHHHHHHH
Confidence            76 499999887777665555444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.35  E-value=3.9e-12  Score=120.24  Aligned_cols=150  Identities=8%  Similarity=0.004  Sum_probs=118.7

Q ss_pred             HHHHhhhhhcc-cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH--Hhhhh--hhhHHH
Q 012286           17 LLVAGFIHGSC-RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWS   91 (466)
Q Consensus        17 ~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~   91 (466)
                      ........|.+ ++++|.++.+.++..+...++..++.++.|+++||+|||+.+.....+..+..  ....+  .++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTL  314 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            33334445544 47789999999999999999999999999999999999998776555444433  12222  246777


Q ss_pred             HHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHHHH
Q 012286           92 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILML  166 (466)
Q Consensus        92 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~  166 (466)
                      ++...++.|++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.++.| |+..++......+
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            77888999999988999999999999999999999998 456677899999999999999888 9888777765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.34  E-value=1.5e-11  Score=116.36  Aligned_cols=160  Identities=13%  Similarity=-0.065  Sum_probs=118.5

Q ss_pred             HHHHHHHhhhhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchh--hH------hHHHHHHHHHHhhh
Q 012286           14 EYVLLVAGFIHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL--IG------VGLSVWTFATAGCG   84 (466)
Q Consensus        14 ~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--l~------~~~~~~~~~~~~~~   84 (466)
                      ......+....| .+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.  ..      .+.++..+......
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (399)
T TIGR00893       228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN  307 (399)
T ss_pred             HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence            333333444444 4456789999999999999999999999999999999999961  11      11111122222222


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAI  163 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~  163 (466)
                      ..++.+.......+.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |+..|++.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~  386 (399)
T TIGR00893       308 YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAA  386 (399)
T ss_pred             cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHH
Confidence            23355555555555555555 788899999999999999999999999999999999999999999988 9999999988


Q ss_pred             HHHHHHHHHHh
Q 012286          164 LMLPFAVLAFV  174 (466)
Q Consensus       164 ~~~~~~~~~~~  174 (466)
                      ..++..+..++
T Consensus       387 ~~~~~~~~~~~  397 (399)
T TIGR00893       387 LALIGALSYLL  397 (399)
T ss_pred             HHHHHHHHHHH
Confidence            87776665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.33  E-value=4.9e-12  Score=118.27  Aligned_cols=161  Identities=8%  Similarity=-0.026  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      ....++............|.|..+. +.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+.....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~~~~~~~~~~~~~   78 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAG-TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK-----KVMIGADLIRAVLV   78 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh-----HHHHHHHHHHHHHH
Confidence            4444555555556666778777764 4454443 555677788889999999999999998     66666655554444


Q ss_pred             HHHHHHh-----hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchh
Q 012286          334 LTAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  408 (466)
Q Consensus       334 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  408 (466)
                      .......     +.+...+...+.+++.+...+....++.+..|+++|+++.|+.+..... |.+++|.+.+.+.+..| 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g-  156 (365)
T TIGR00900        79 AVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL-FYIVGPGIGGLMYATLG-  156 (365)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh-
Confidence            4444444     6667777777778888887888888999999999999999999877777 88999999999988766 


Q ss_pred             hHHHHHHHHHHHHHH
Q 012286          409 WRKTTLALTSIFFLA  423 (466)
Q Consensus       409 ~~~~~~~~~~~~~~~  423 (466)
                      |+..++......++.
T Consensus       157 ~~~~~~~~~~~~~~~  171 (365)
T TIGR00900       157 IKWAIWVDAVGFAIS  171 (365)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777776655544333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.33  E-value=1e-11  Score=119.44  Aligned_cols=171  Identities=11%  Similarity=-0.059  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh--ccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchhHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSA  324 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~  324 (466)
                      +.++.+.+..++..+.+++...++|.|+++.  +|.+..+. .......+...++.+++|+++|| +|||     +.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~-----~~l~~   84 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK-----KTMVL   84 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH-----HHHHH
Confidence            4455666666777788888999999999887  77776554 55567778889999999999999 8998     77777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCc---hhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      +..+..+..++....++.+.......+.+.+.+...+.......+.+|++   .|+++.++.+...+. |.++||.+.|+
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni-G~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI-GSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH-HHHHHHHHHHH
Confidence            76666666555555555555555555666666667777777888878764   488899999888888 99999999999


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHH
Q 012286          402 LQDHVNNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       402 l~~~~g~~~~~~~~~~~~~~~~~~~  426 (466)
                      +.++.| |+..|...+...+++.+.
T Consensus       164 l~~~~g-~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       164 IAENYG-YHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHHH
Confidence            999876 888887766554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=1.9e-11  Score=114.92  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=122.7

Q ss_pred             hcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcch
Q 012286           25 GSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  104 (466)
Q Consensus        25 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  104 (466)
                      |...+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.+++.+.+++..++.|++.+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            44446789999999999999999999999999999999999999999999999988888889999999999999999999


Q ss_pred             hhhcchhhhhhccCCCCCchhHHHHHH-hhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286          105 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus       105 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      ...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+.+|+ ..|+..+++.++.
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            8889899998887 5666789899886 56678889999999999999887 4666666655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.32  E-value=6.9e-12  Score=119.12  Aligned_cols=136  Identities=13%  Similarity=0.106  Sum_probs=114.5

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH-hhhhhhhHHHHHHHHHHhhhcch
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-GCGSSFDFWSIAICRMLVGVGEA  104 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~  104 (466)
                      .+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..+ +....++.+.+.+..++.|+..+
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            45567899999999999999999999999999999999999999888776533322 33345667777777777887777


Q ss_pred             hhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHh
Q 012286          105 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGE  161 (466)
Q Consensus       105 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~  161 (466)
                      ...+...+++.|.+|+++|++++|+.+....+|..++|++++.+.++.| |+..+...
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            7778888999999999999999999999999999999999999999888 87766654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.32  E-value=2.5e-11  Score=115.02  Aligned_cols=174  Identities=13%  Similarity=0.011  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhh-cccccchhHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAA  325 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~  325 (466)
                      ++.++..+.......+.+++...++|.|+++..|.++... ...........++.+++|+++||+ |||     +.+..+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~iliG   82 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVMLG   82 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHH
Confidence            4556666666677778888899999999999888886554 444566677788899999999999 998     666555


Q ss_pred             HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCc--hhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          326 TFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       326 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      ..+..+..++....+ +.........+...+.+...+...++..+.+|++  .|.++.++.+...++ |+.++|.+.|++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl-G~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV-GSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH-HHHHHHHHHHHH
Confidence            555554443332222 1122222233333444444555667778888875  799999999988887 889999999999


Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      .+..| |+..|...+...+++.+.+.
T Consensus       162 ~~~~G-w~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        162 QEEYS-WAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HhhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            98776 88888776655444444433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.30  E-value=5.1e-11  Score=107.79  Aligned_cols=164  Identities=16%  Similarity=0.091  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-hhH
Q 012286           11 MIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDF   89 (466)
Q Consensus        11 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~   89 (466)
                      +..+-....++++-|.+++..|.+.+.++++.-.|.++..+++..+|++.|| +.|+.+.....+..+..+...+. ++.
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence            3344456678899999999999999999999999999999999999999999 99999999877777777776655 555


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  169 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~  169 (466)
                      +..++.-++.|++........+..+++ ..++.+..+.+++....++|..+|..+||.+.+++|++...+..+++.++..
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~  379 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            566667777777777666666666666 3356799999999999999999999999999999999999999999888877


Q ss_pred             HHHHhhc
Q 012286          170 VLAFVIK  176 (466)
Q Consensus       170 ~~~~~~~  176 (466)
                      ++.+...
T Consensus       380 ~~~~~~~  386 (394)
T COG2814         380 LLALLSA  386 (394)
T ss_pred             HHHHHHH
Confidence            7766553

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.28  E-value=3.7e-11  Score=113.39  Aligned_cols=164  Identities=13%  Similarity=0.058  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHH
Q 012286          252 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  330 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      +......++...+.+....+.|.++++..+.++... .......+...+..++.|+++||++||     +.+..+..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k-----~~l~~~~~~~~   87 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK-----PMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch-----HHHHHHHHHHH
Confidence            344456667777777778888999988888886655 333555667777789999999999998     77777777777


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhH
Q 012286          331 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  410 (466)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  410 (466)
                      ...+.....++.+...+...+.+++.+...++....+.+..|+++|+++.|+.+...+. |..+||.+.|.+. ..| |+
T Consensus        88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~g~l~-~~g-~~  164 (400)
T PRK11646         88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSA-GAVIGALLGSWLL-QYD-FR  164 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh-HH
Confidence            76666666666666666667777766666666777788888999999999999887777 8899999999998 444 77


Q ss_pred             HHHHHHHHHHHHH
Q 012286          411 KTTLALTSIFFLA  423 (466)
Q Consensus       411 ~~~~~~~~~~~~~  423 (466)
                      ..+++.+...++.
T Consensus       165 ~~f~~~~~~~~~~  177 (400)
T PRK11646        165 LVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777665554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.28  E-value=2.1e-11  Score=117.17  Aligned_cols=157  Identities=9%  Similarity=-0.094  Sum_probs=110.4

Q ss_pred             Hhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc--CCchhh-HhHHHHHHHHHHhhhh--hhhHHHHH
Q 012286           20 AGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GVGLSVWTFATAGCGS--SFDFWSIA   93 (466)
Q Consensus        20 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~   93 (466)
                      .....|. ++++.|.+..+.++..+.+.++..++.++.|+++||+  |||+.. .....+..++.++..+  .++.+...
T Consensus       272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (452)
T PRK11273        272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM  351 (452)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence            3344555 4455789988999999999999999999999999999  555432 2222333333332222  23444444


Q ss_pred             HHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhh-hhhhhhhhccCCcchhHHHHHhHHHHHHHHHHH
Q 012286           94 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus        94 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      +..++.|.+..........+..|.+|+++|+++.|+.+....+|.. .+|.+.+.+.++.||+..|++.+..+++..+..
T Consensus       352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            5555555543322333345678999999999999999988888765 489999999999999999999988877776666


Q ss_pred             Hhhc
Q 012286          173 FVIK  176 (466)
Q Consensus       173 ~~~~  176 (466)
                      ..+.
T Consensus       432 ~~~~  435 (452)
T PRK11273        432 IVVM  435 (452)
T ss_pred             HHHh
Confidence            6554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=4.8e-11  Score=114.27  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      ++.++...+...........+....|.+ ++ .|.++.+. ...+...++..++.++.|++.||++||     +.+..+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----~~~~~~~   98 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYL-VE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHH-HH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc-----eehHHHH
Confidence            3444444444444444444445556644 44 37776655 555677888999999999999999998     5555444


Q ss_pred             HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          327 FLGAISCLTAFCL----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       327 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      .+..+..+.....    .+.+...+..++.+++.+...++....+.+.+|+++|++++|+.+..... |..++|.+.+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~l~~~~  177 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI-GGGIPPLLVLLG  177 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh-HhHHHHHHHHHH
Confidence            4444443333221    23334444455666666666666777778888899999999999877777 777788777765


Q ss_pred             hhcchhhHHHHHHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIFFLAAG  425 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~~~~~~  425 (466)
                      .+...+|+..|+..+...++..+
T Consensus       178 ~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       178 MAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHH
Confidence            55434588888776666544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.27  E-value=1.1e-11  Score=115.23  Aligned_cols=163  Identities=17%  Similarity=0.142  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH
Q 012286          256 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  334 (466)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      +..++............|.++.+.++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~   77 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR-----RVLIIGLLLFALGSL   77 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeEeehhhhhhhHHH
Confidence            34455555555566667756667778776555 555677888899999999999999998     766666666666634


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHH
Q 012286          335 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  414 (466)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  414 (466)
                      ...+.++.+...+..++.+++.+...+.....+.+.+|+++|+++.++.+..... |.+++|.+.+.+.+..+ |+..++
T Consensus        78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~~-~~~~~~  155 (352)
T PF07690_consen   78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL-GSILGPLLGGFLISYFG-WRWAFL  155 (352)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHCH-HCCHHH
T ss_pred             HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh-hhhcccchhhhhhhccc-cccccc
Confidence            4333356667777778888888888888899999999999999999999877777 98999999999997766 777777


Q ss_pred             HHHHHHHHHHH
Q 012286          415 ALTSIFFLAAG  425 (466)
Q Consensus       415 ~~~~~~~~~~~  425 (466)
                      +.+...++..+
T Consensus       156 ~~~~~~~~~~i  166 (352)
T PF07690_consen  156 ISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cccchhhhhhh
Confidence            77766555544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.27  E-value=5.8e-11  Score=114.85  Aligned_cols=154  Identities=9%  Similarity=0.033  Sum_probs=122.5

Q ss_pred             hhhhcccccccccccchhHHHH-HHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh---hhh-hhHHHHHHHH
Q 012286           22 FIHGSCRGDFKLNNFQDGVLSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR   96 (466)
Q Consensus        22 ~~~~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r   96 (466)
                      ...|.+.+++|.+.++.++..+ ...++..++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-
T Consensus       244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3445556779999999999974 6678999999999999999999998877666555544332   232 3555555566


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +++.+..|...+...++..+..+++.+++..++.+...++|..+++.++|.+.+..||+..|.+.++++++..++..+.
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555666666788999999999999999999999999999998899999999999999999999888877666655

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=9.8e-11  Score=111.98  Aligned_cols=150  Identities=13%  Similarity=0.062  Sum_probs=112.8

Q ss_pred             hcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh---h-hhHHHHHHHHHHhh
Q 012286           25 GSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---S-FDFWSIAICRMLVG  100 (466)
Q Consensus        25 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G  100 (466)
                      +.+.+++|.+......+.....+...++.++.|+++||+|||+.+..+.++..++.+....   . ++.+.+++..++.|
T Consensus       275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  354 (438)
T PRK09952        275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN  354 (438)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3456778888776666666667777888999999999999999998887766555443322   1 23445555667778


Q ss_pred             hcchhhhcchhhhhhccCCCCCchhHHHHHH-hhhhhhhhhhhhhhhhccCCc--chhHHHHHhHHHHHHHHHHHHh
Q 012286          101 VGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFV  174 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~  174 (466)
                      ++.+...+...+++.|.+|++.|+...++.+ .+..+|..++|.+.+++.+..  +|+..+...++..++..+..+.
T Consensus       355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999998888854 445589999999999987643  4888888887777766655543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.25  E-value=1.1e-10  Score=112.97  Aligned_cols=178  Identities=11%  Similarity=-0.051  Sum_probs=120.4

Q ss_pred             hhhchh-HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchhH
Q 012286          244 VLLQEK-VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFK  320 (466)
Q Consensus       244 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~  320 (466)
                      +.+++| .++......++..+.+++...++|.|+++.+|.+.... ..............+++|++.|| +|||     +
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----~   89 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----R   89 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----H
Confidence            344555 47777777788888888999999999999999886544 32223333333334689999999 5998     6


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCc--hhhHHHHHHHHHHHhhcccCccc
Q 012286          321 LLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~  397 (466)
                      .+..+..+..+...+..... ..+...+...+.+++.+...+.......+.+|++  .++.+.++.+...+. |..++|.
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i-G~~~gp~  168 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI-GSFFSML  168 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH-HHHHHHH
Confidence            66656555554444443332 3333444445566666666666677788888764  345678887778888 8899999


Q ss_pred             hhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          398 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       398 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +.|++.|..| |+..|........++.+.+.
T Consensus       169 i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        169 ATPWLAAKYG-WSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999876 88888876655444444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.25  E-value=8.4e-11  Score=111.75  Aligned_cols=168  Identities=14%  Similarity=0.178  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCc--hhhHhHHHHHHHHHHhhh
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~   84 (466)
                      +-..+.||++... ......-.+++|++..+...+.-+..+...++++++|++.||+|.|  +++..+++++.+..+...
T Consensus       289 a~~l~~dg~~ti~-~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~  367 (477)
T PF11700_consen  289 AYFLYSDGVNTII-SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL  367 (477)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence            3344556655433 3344456679999999999999999999999999999999999999  899998888866666655


Q ss_pred             h--------hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hh
Q 012286           85 S--------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WR  155 (466)
Q Consensus        85 ~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr  155 (466)
                      +        .++-+.+++.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..| -|
T Consensus       368 ~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r  447 (477)
T PF11700_consen  368 FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR  447 (477)
T ss_pred             HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            5        67888999999999999999999999999999999999999999999999999999999999988776 88


Q ss_pred             HHHHHhHHHHHHHHHHHHhh
Q 012286          156 YAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~  175 (466)
                      ..+....++.++..++.++.
T Consensus       448 ~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  448 YGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             hHHHHHHHHHHHHHHHHhhc
Confidence            88888877766665555433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.25  E-value=9.8e-11  Score=113.47  Aligned_cols=168  Identities=14%  Similarity=0.108  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      +.++...+..++.....+....+.|.+.++ +|.++... .......++..++.++.|++.||+|||     +.+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR-----NIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHH
Confidence            456777777777777777788889998876 77776554 444556677788899999999999998     66655555


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +.....+.....++.+..++..++.+++.+...+.....+.+.+|+++|+++.|+.+...+. |..++|.+.|.+.++.|
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQV-GPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhhcc
Confidence            54444444444556666667777777877777777777788888889999999999877777 88999999999999876


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 012286          408 NWRKTTLALTSIFFLAA  424 (466)
Q Consensus       408 ~~~~~~~~~~~~~~~~~  424 (466)
                       |+..|.+......+..
T Consensus       163 -w~~~f~~~~~~~~l~~  178 (471)
T PRK10504        163 -WHWIFLINIPVGIIGA  178 (471)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             8877777655444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.24  E-value=7.9e-11  Score=112.63  Aligned_cols=136  Identities=9%  Similarity=-0.034  Sum_probs=100.2

Q ss_pred             Hhhhhhccc-ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHh-h---hhhhhHHHHHH
Q 012286           20 AGFIHGSCR-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG-C---GSSFDFWSIAI   94 (466)
Q Consensus        20 ~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~~l~~   94 (466)
                      +....|.+. +.+|.+..+.++....+.++..++.+++|+++||+|||+.+..+.++..+.... .   ...+++..+..
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            334455544 458999989999998999999999999999999999999888765544332211 1   11234444555


Q ss_pred             HHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHh-hhhhhhhhhhhhhhhccCCcchh
Q 012286           95 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWR  155 (466)
Q Consensus        95 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~gwr  155 (466)
                      ..++.|++.+...+....++.|.+|+++|++.+++... +..++..++|.+.+++.++.|++
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            56666777777677777899999999999999998644 44445778999999999888864

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=6.8e-09  Score=96.24  Aligned_cols=315  Identities=10%  Similarity=0.035  Sum_probs=184.0

Q ss_pred             hhHH-HHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhc
Q 012286           38 DGVL-SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD  116 (466)
Q Consensus        38 ~g~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  116 (466)
                      .|.. .++-...+.+.+++.+.+.|+.|.|+.+.++...+..-.+.+-+. |-+-+++.-.+.|+|.+..+..--.+++|
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhh
Confidence            3444 678888889999999999999999999999999998888776554 56777889999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC--------cchh-HHH-------HHhHHHHHHHHHHHHhhccccc
Q 012286          117 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWR-YAF-------WGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       117 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~gwr-~~f-------~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      ..+++.+.+..++..+....+.++|..+-..+..+        .+-+ ..+       .+.-+..++..+...-. ....
T Consensus       130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~-i~~~  208 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSI-INFD  208 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHh-hhee
Confidence            99999999999999999999988887665443311        1111 111       11111111111100000 0000


Q ss_pred             cCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHH
Q 012286          181 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  260 (466)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (466)
                      .   .+.+.....                    .+.. +             ....+..+..-+++++++...+....+.
T Consensus       209 ~---~p~~~~~~~--------------------~~~~-~-------------~~~~~~l~~~~~l~~~~~ml~L~~~f~~  251 (461)
T KOG3098|consen  209 F---LPSKDVVNC--------------------KSSS-E-------------TSFSELLKLTFKLLKTPKMLLLFPFFFY  251 (461)
T ss_pred             e---cCccchhhh--------------------hhhc-c-------------ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            0   000000000                    0000 0             0112222344456677777776666555


Q ss_pred             HHHHhhhhHhhhhhhhhhh--ccccchh--hHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHH
Q 012286          261 YNFVIGAYSYWGPKAGYNI--YHMSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  336 (466)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (466)
                      .+..........|.-+.-.  .+.+...  .......+++.+++....+.+.+|.++....  +.+.....+....+++.
T Consensus       252 tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~~~li  329 (461)
T KOG3098|consen  252 TGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIGFLLI  329 (461)
T ss_pred             HHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHH
Confidence            5554444444445433322  2222221  1233444566666667777777766543221  44444433333333332


Q ss_pred             HH-Hh-----------------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCc
Q 012286          337 FC-LS-----------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS  395 (466)
Q Consensus       337 ~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~  395 (466)
                      .. .+                 +.....++..+.|+.-.......++.+.... |+.|.++.++.-.-... +..++
T Consensus       330 ~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~-~s~v~  404 (461)
T KOG3098|consen  330 HLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSV-ASCVA  404 (461)
T ss_pred             hccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHH-HHHHH
Confidence            21 11                 2345666667777777777777777777776 77788888887544333 55443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.24  E-value=9e-11  Score=110.96  Aligned_cols=144  Identities=8%  Similarity=0.044  Sum_probs=124.9

Q ss_pred             cccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchh
Q 012286           32 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  111 (466)
Q Consensus        32 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  111 (466)
                      +.+..+.|.+.+...+...++.++.|++.||+|||+.+.++.++.+++..+...++|.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566778889999999999999999999999999999999999999888878889999999999999998877766677


Q ss_pred             hhhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          112 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       112 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      .+..+..+++.+++..+. ++....+|..+++.++|++.+..||+..|.+.+++.++..++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  394 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVFT  394 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888888877766 6788999999999999999999999999999998887777665543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.24  E-value=9.4e-11  Score=112.86  Aligned_cols=170  Identities=12%  Similarity=-0.009  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchhHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAA  325 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~  325 (466)
                      .+.++..+...+...+.+++...+++.|+++..|.+.... .....+.....+..+++|+++|| +|||     +.+..+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r-----~~~~~g   87 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK-----RTIVLG   87 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH-----HHHHHH
Confidence            3556666667777788899999999999999888886544 33344444555556789999999 9999     777666


Q ss_pred             HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCccceeeeecccCCc--hhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          326 TFLGAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      ..+..+..+......+ .....+...+.+.+.+...+....++.+.+|++  +|+.+.++.....++ |..++|.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni-g~~~g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI-GSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH-HHHHHHHHHHHH
Confidence            6666665554444433 222334455566777777778888899999886  457788888888888 999999999999


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH
Q 012286          403 QDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       403 ~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      .++.| |++.|++.......+.
T Consensus       167 ~~~~g-w~~~F~i~~i~~~~~~  187 (489)
T PRK10207        167 ADKFG-YSVTYNLCGAGLIIAL  187 (489)
T ss_pred             HHhhC-hHHHHHHHHHHHHHHH
Confidence            99886 8888877554433333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.23  E-value=1e-10  Score=112.85  Aligned_cols=149  Identities=10%  Similarity=-0.032  Sum_probs=107.7

Q ss_pred             hcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCch-------hhHhHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 012286           25 GSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-------LIGVGLSVWTFATAGCGSSFDFWSIAICRM   97 (466)
Q Consensus        25 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~   97 (466)
                      +.+.+++|.+..+.+.+.+.+.++..++.+++|+++||+|||+       .+.+..++.++..++....++.+...+.-+
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3456778999999999999999999999999999999998752       333333333344444555666666666666


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +.+++.+...+...+++.+..| ++|+...|+...+..+|..++|.+.+ ..+..+|+..|++.+++.++..++.++.
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6777666556666667777655 67999999998888788877776643 2234569999999988877776665554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.23  E-value=1.6e-09  Score=98.72  Aligned_cols=320  Identities=16%  Similarity=0.068  Sum_probs=176.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccC
Q 012286           39 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  118 (466)
Q Consensus        39 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  118 (466)
                      +.+.-+-.+...+..+.+.++.+|+..+.=.....++..++.++.++++|.+.=+++-.+.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            34555666777777788888899988766667777888899999999999999999999999999988877777654 55


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc--hhHHHHHhHHHHHHHHHHHHhhccccccCCCCCcccccccccc
Q 012286          119 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  196 (466)
Q Consensus       119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  196 (466)
                      ++    ...+-++.+.+.+.++|+..-..+.+ .+  -|..+++...+.++..+..++.+|..+......+.+...   +
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~---~  212 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED---E  212 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC---c
Confidence            53    35788888888888888877655555 44  477888877776666665566655422111110000000   0


Q ss_pred             ccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhh
Q 012286          197 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG  276 (466)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (466)
                              ..++..+++..+    .+.+...    ....++.++..+.++.  ....+.+.++..+....++.   |...
T Consensus       213 --------~~~~~~~~~~~~----~~~~~~~----~~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~---~tl~  271 (402)
T PF02487_consen  213 --------AEDDLLESETSE----SKPDSSS----KLSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVA---PTLL  271 (402)
T ss_pred             --------cccccccccccc----ccccccc----hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchH---HHhc
Confidence                    000000000000    0000000    0111111222222221  22333344444443333332   2222


Q ss_pred             hhhccccc-hhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHH
Q 012286          277 YNIYHMSN-ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTV  351 (466)
Q Consensus       277 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  351 (466)
                      ......++ ... .+...+.++-.+++--..++  |+.+-     +++.....+-.+..+   ...+.++.|..+++++.
T Consensus       272 fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~l-----wils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~  344 (402)
T PF02487_consen  272 FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRL-----WILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFY  344 (402)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            11112222 122 44455555555544332221  12111     222111111111111   11234567777778888


Q ss_pred             HHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          352 GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                      -|...|..+......+.++.++++|..++|.....-.. |..++.
T Consensus       345 eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~-GI~lAg  388 (402)
T PF02487_consen  345 EGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSL-GILLAG  388 (402)
T ss_pred             HHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhH-HHHHHH
Confidence            88888888888888889999999999999998644444 655544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=7e-11  Score=112.00  Aligned_cols=166  Identities=10%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      +....+.+.+.+..........| .+++.++.+..+. ...+...++..++.++.|++.||+|||     +.+..+.++.
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----~~~~~~~~~~   83 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR-----RWIAGIMVLW   83 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH-----HHHHHHHHHH
Confidence            33344444444444444555555 5667788887665 555777888899999999999999999     7777776666


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc----
Q 012286          330 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH----  405 (466)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~----  405 (466)
                      .+........++.+...+.-++.|++.+...+.....+.+.+|+++|+++.++.+..... |.++++.+.+++.+.    
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV-TMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCC
Confidence            666666666677777777777788888777776667778888889999999999877776 888899898888642    


Q ss_pred             -chhhHHHHHHHHHHHHHH
Q 012286          406 -VNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       406 -~g~~~~~~~~~~~~~~~~  423 (466)
                       ..+|+..|.+.+...++.
T Consensus       163 ~~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             CccchhHHHHHHHHHHHHH
Confidence             124888888765554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.22  E-value=8.5e-11  Score=112.42  Aligned_cols=139  Identities=11%  Similarity=0.035  Sum_probs=104.5

Q ss_pred             hhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh--hHHHHHHHHHHh
Q 012286           22 FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLV   99 (466)
Q Consensus        22 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~   99 (466)
                      ...|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....+  +...+....+..
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (426)
T PRK12307        252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL  331 (426)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            345666666788988999999999999999999999999999999999988877766655444332  222222222222


Q ss_pred             hhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHH
Q 012286          100 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWG  160 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~  160 (466)
                      +.+.....+..+.++.|.+|+++|++++|+......+|..++|.+.+++.+..|+....++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        332 MATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            2222233455667889999999999999999999999999999999999998886654333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.22  E-value=3.2e-10  Score=107.61  Aligned_cols=151  Identities=11%  Similarity=-0.056  Sum_probs=120.4

Q ss_pred             hhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-----hhHHHHHHHHH
Q 012286           24 HGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRM   97 (466)
Q Consensus        24 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~   97 (466)
                      .|. +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     ++++.+++.-+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            444 356789999999998888888999999999999999999999999988887777776654     35667788899


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      +.|++.+...+......... ++++|++..+..+....+|..+|+.+++.+.+..+|....+...+.+++..+....+
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988777666655443 457899999999999999999999999999888887776666655555554444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.22  E-value=8.8e-11  Score=110.72  Aligned_cols=154  Identities=15%  Similarity=0.050  Sum_probs=114.2

Q ss_pred             HHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 012286          263 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  341 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      ..........|.+.+ .++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+..+.....++
T Consensus        19 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        19 LGIDMYLPAFPEIAA-DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR-----PVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHhcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHcc
Confidence            334444445555544 467775554 555677788899999999999999998     7776666666666666666667


Q ss_pred             HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHH
Q 012286          342 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  421 (466)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  421 (466)
                      .+...+..++.+++.+...+.....+.|..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+.+.+...+
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~  170 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGYILVWLS-WHAIFAFLSLAGI  170 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence            777777777777777777777888888999999999999999877777 88889999999988766 7777776655544


Q ss_pred             HHH
Q 012286          422 LAA  424 (466)
Q Consensus       422 ~~~  424 (466)
                      +..
T Consensus       171 ~~~  173 (385)
T TIGR00710       171 LLS  173 (385)
T ss_pred             HHH
Confidence            433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=3e-11  Score=113.59  Aligned_cols=157  Identities=16%  Similarity=0.130  Sum_probs=113.7

Q ss_pred             HHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 012286          259 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  337 (466)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
                      ++.......+....|. +++.++.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+..+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~   78 (379)
T TIGR00881         5 AAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR-----VFLPIGLILCAIVNLFFG   78 (379)
T ss_pred             hHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe-----ehhHHHHHHHHHHHHHHH
Confidence            3444445555566664 455577776554 555777888899999999999999999     666666666666666666


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccc-hhHHhhhcchhhHHHHHHH
Q 012286          338 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP-LVGVLQDHVNNWRKTTLAL  416 (466)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-~~g~l~~~~g~~~~~~~~~  416 (466)
                      ..++.+...+...+.+++.+...+.....+.+.+|+++|+++.++.+..... |..++|. +.+.+.+..+ |+..+.+.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~  156 (379)
T TIGR00881        79 FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV-GGGLLPPLVLFGIAELYS-WHWVFIVP  156 (379)
T ss_pred             HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh-HHHHHHHHHHHHHHhcCC-chhHHHHH
Confidence            6667777777777788887888888888889999999999999998777666 8888884 5555555544 77776665


Q ss_pred             HHHHHHH
Q 012286          417 TSIFFLA  423 (466)
Q Consensus       417 ~~~~~~~  423 (466)
                      +.+.++.
T Consensus       157 ~~~~~~~  163 (379)
T TIGR00881       157 GIIAIIV  163 (379)
T ss_pred             HHHHHHH
Confidence            5544333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=1.1e-10  Score=110.06  Aligned_cols=147  Identities=12%  Similarity=-0.072  Sum_probs=114.5

Q ss_pred             hhcccccccccccchhHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh------hhhHHHHHHHH
Q 012286           24 HGSCRGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICR   96 (466)
Q Consensus        24 ~~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r   96 (466)
                      .+...+|.|.++++.|++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...++...
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            34455678999999999988776 466677899999999999999998877666433332221      12334445556


Q ss_pred             HHhhhcchhhhcchhhhhhccCCC-CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHH
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  170 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  170 (466)
                      .+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..||+..|+..+++.++..+
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            666777777777788888788776 78999999999999999999999999999999999999988876665544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.20  E-value=1.6e-10  Score=108.22  Aligned_cols=147  Identities=17%  Similarity=0.091  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      ++...+..+...........+.|.++++.+|.++... .......++..++.++.|++.||+|||     +.+..+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~   77 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLLL   77 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            4555666666666677778888887888899987665 555777888999999999999999998     6666666666


Q ss_pred             HHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          330 AISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       330 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      .+..+.....+ +.+...+..++.+++.+ ...+....+.+..|+++|+++.++.....+. |..+++.+.+.+.+
T Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  151 (366)
T TIGR00886        78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNM-GGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            66655555555 66666556566665533 3455567778888889999999998765555 66666666665554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.20  E-value=1.9e-08  Score=93.48  Aligned_cols=360  Identities=12%  Similarity=0.079  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccc-cccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKL-NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-   86 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-   86 (466)
                      -.++...+-.+..+..|-+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+.+.. 
T Consensus        10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~   89 (432)
T PF06963_consen   10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALF   89 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444555544444422 22222333334455667788889999999999999887776654444433221 


Q ss_pred             -------h-------hHHHHHHHHHHhhh-cchhhhcchhhhhhccC------CCCCchhHHHHHHhhhhhhhhhhhhhh
Q 012286           87 -------F-------DFWSIAICRMLVGV-GEASFISLAAPFIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYG  145 (466)
Q Consensus        87 -------~-------~~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~  145 (466)
                             +       .++.+++.-.+.|. ..=.......+.-.||.      +++.+.+..+...-.-.+.-+++|++.
T Consensus        90 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~v  169 (432)
T PF06963_consen   90 LLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFV  169 (432)
T ss_pred             HHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1       12222222223332 22122233334445553      334455666666666777889999999


Q ss_pred             hhccCCcchhHHHHHhHHHHHHHHHHHHhhcccccc---CCCCCccccccccccccccccccCCCCccccccccchhhhc
Q 012286          146 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK---GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  222 (466)
Q Consensus       146 ~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (466)
                      |.+.+..+.+....+.++..++..++=+++....-+   ....+++.+...         ..+.     ++   ....+.
T Consensus       170 G~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~---------~~~~-----~~---~~~~~~  232 (432)
T PF06963_consen  170 GLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE---------SSSD-----EE---SSSESS  232 (432)
T ss_pred             HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc---------cccc-----cc---cccccc
Confidence            999998899998888888888877766665521110   000011100000         0000     00   000000


Q ss_pred             cccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccc
Q 012286          223 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  301 (466)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  301 (466)
                      .++...++..+..+...++|+..+++|.+....- ..+.++..-++...+..|+... |.++... .+-+...+.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a-lalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT  310 (432)
T PF06963_consen  233 SDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA-LALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGT  310 (432)
T ss_pred             chhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            1111111112333444567777888887666444 3333444445566677788876 7776554 34466778888999


Q ss_pred             hhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH-h------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCc
Q 012286          302 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-S------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  374 (466)
Q Consensus       302 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (466)
                      ++..++.+|+|..+...  +-+..-..+...+....+. .      +...++..+.+.-++.-..--...-+++|.+|++
T Consensus       311 ~~~p~l~~riGlvr~G~--~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~  388 (432)
T PF06963_consen  311 WVYPWLMKRIGLVRAGL--WSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES  388 (432)
T ss_pred             HHHHHHHHHhcchhhHH--HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH
Confidence            99999999999763221  1111111122222222222 2      1222333333333333344445566788889999


Q ss_pred             hhhHHHHHHHHHHHh
Q 012286          375 LRALSMAISTVSIHI  389 (466)
Q Consensus       375 ~~~~~~g~~~~~~~~  389 (466)
                      +||+..|+-+...+.
T Consensus       389 ~Rg~v~gvq~sl~~l  403 (432)
T PF06963_consen  389 ERGAVSGVQNSLQSL  403 (432)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            999999999877776

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.19  E-value=2.1e-10  Score=111.86  Aligned_cols=157  Identities=9%  Similarity=-0.078  Sum_probs=107.6

Q ss_pred             hhhcccccccccccchhH------------HHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhh--
Q 012286           23 IHGSCRGDFKLNNFQDGV------------LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--   88 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--   88 (466)
                      ..|.+.++.|.+..+.+.            ......++..++.+..++++||+|||+.++.+.++.+++..+.++..+  
T Consensus       310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~  389 (502)
T TIGR00887       310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL  389 (502)
T ss_pred             ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356666777776543221            123445566678889999999999999999988888777766654321  


Q ss_pred             --HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC----------cchhH
Q 012286           89 --FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------LNWRY  156 (466)
Q Consensus        89 --~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~gwr~  156 (466)
                        ...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|..++|.+.+.+.+.          .++..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  469 (502)
T TIGR00887       390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH  469 (502)
T ss_pred             chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence              111111111112222223456677889999999999999999999999999999999888763          34567


Q ss_pred             HHHHhHHHHHHHHHHHHhhccccc
Q 012286          157 AFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       157 ~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      .|++.++.+++..+. ++++||++
T Consensus       470 ~~~i~~~~~~~~~i~-~~~lpEt~  492 (502)
T TIGR00887       470 VLEIFALFMFLGILF-TLLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHHHH-heEeccCC
Confidence            788888777766554 45558754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00895 2A0115 benzoate transport

Probab=99.19  E-value=3.5e-11  Score=113.95  Aligned_cols=149  Identities=14%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             HHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 012286          263 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  341 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
                      ........+.|.+.++ ++.++... .......++..++.++.|++.||++||     +.+..+..+..+..+.....++
T Consensus        31 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~  104 (398)
T TIGR00895        31 YDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK-----RVLLWSILLFSVFTLLCALATN  104 (398)
T ss_pred             HHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHccc
Confidence            3344445556655544 67775544 445666788889999999999999998     6666666665555555555566


Q ss_pred             HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHH
Q 012286          342 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      .+...+...+.+++.+...+.......+..|+++|+++.++.+..... |..++|.+.+.+.+..| |+..+.+.+..
T Consensus       105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-~~~~~~~~~~~  180 (398)
T TIGR00895       105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI-GAAVGGFLAGWLIPVFG-WRSLFYVGGIA  180 (398)
T ss_pred             hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH-HHHHHHHHHHHHhhccc-ceeehhhhhhH
Confidence            666666677777777777788888888988889999999999776666 88899999999988776 66666665433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.19  E-value=1.5e-10  Score=105.88  Aligned_cols=168  Identities=13%  Similarity=0.123  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH
Q 012286           10 AMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF   89 (466)
Q Consensus        10 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~   89 (466)
                      ++-+.+|.+. +.-...+-++-+.++..+|.+.+...+.-++.-.+..++.+|+|.|+.++++..+..+=.+++++++|.
T Consensus       234 ~~Y~vfdqqf-~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  234 AIYDVFDQQF-PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP  312 (412)
T ss_dssp             HHHHHHHHHH-HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH
T ss_pred             HHHHHHHHHH-HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch
Confidence            4556666663 333333444555667779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      +.+.+.+.+.|+-.+........|+++.+|+|-.++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.++.
T Consensus       313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~  392 (412)
T PF01306_consen  313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPF  392 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887787777 478899999999999999999999999999999999988


Q ss_pred             HHHHHhhccc
Q 012286          169 AVLAFVIKPL  178 (466)
Q Consensus       169 ~~~~~~~~p~  178 (466)
                      .++..+.+++
T Consensus       393 ~li~~f~l~~  402 (412)
T PF01306_consen  393 TLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHS--
T ss_pred             HHHheeeecC
Confidence            8898888754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=2.7e-10  Score=107.07  Aligned_cols=167  Identities=15%  Similarity=0.023  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  327 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  327 (466)
                      +.++......+............+|.+.++ +|.+..+. ...+...++..++.++.|++.||+|||     +.+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK-----HILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH-----HHHHHHHH
Confidence            344555555566666666666677766554 67775544 555777889999999999999999998     77777777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          328 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      +..+..++....++.+...+.-++.+++.+...+.......+..++++|+++.+........ |..++|++.+.+.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTV-ANLLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHH-HHHHhccHHHHHhhhcc
Confidence            76666666666777777777777777777766555566667777788899999998766666 88889999999988766


Q ss_pred             hhHHHHHHHHHHHHHH
Q 012286          408 NWRKTTLALTSIFFLA  423 (466)
Q Consensus       408 ~~~~~~~~~~~~~~~~  423 (466)
                       |+..+...+...++.
T Consensus       156 -wr~~f~~~~~~~~~~  170 (382)
T PRK10091        156 -WRYTFLLIAVFNIAV  170 (382)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             888887766554433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.18  E-value=6.3e-10  Score=95.26  Aligned_cols=158  Identities=11%  Similarity=0.042  Sum_probs=124.1

Q ss_pred             HHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-------hh
Q 012286           16 VLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FD   88 (466)
Q Consensus        16 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~   88 (466)
                      ....++.-.|++++.+|+|.+|.+.+.+...+|..+ .++.|.+.||+|+|.++.+|.+...+|..+...+       .+
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            444566677899999999999999999999999987 5888999999999999999999999999887654       46


Q ss_pred             HHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           89 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        89 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      +|.+.+..++.|.+.+...+++.....+.+|+ +||++.|+.-...+++..+-..+...+.+.-.-+..+.+.....++.
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~  174 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVC  174 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            78888888999988887778888888889985 69999999999999988876666655555433444444444444444


Q ss_pred             HHHHHhh
Q 012286          169 AVLAFVI  175 (466)
Q Consensus       169 ~~~~~~~  175 (466)
                      .+..++.
T Consensus       175 l~~~~~v  181 (250)
T PF06813_consen  175 LVAMFFV  181 (250)
T ss_pred             HHHhhhe
Confidence            4444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=1.7e-10  Score=110.71  Aligned_cols=130  Identities=15%  Similarity=0.089  Sum_probs=107.9

Q ss_pred             hhccccc-ccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-hhHHHHHHHHHHhhh
Q 012286           24 HGSCRGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGV  101 (466)
Q Consensus        24 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~  101 (466)
                      .+.+.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+++..+..+..++.++..+. ++.+.+++..++.|+
T Consensus       245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  323 (437)
T TIGR00792       245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGF  323 (437)
T ss_pred             hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence            3444333 34 55667888888899999999999999999999999999998888887777665 466777888899999


Q ss_pred             cchhhhcchhhhhhccCC-------CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcch
Q 012286          102 GEASFISLAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  154 (466)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  154 (466)
                      +.+...+...++++|..|       ++++|...++.+....+|..+++.+.+.+.+..||
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       324 GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999889999999999865       45679999999999999999999999988766555

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.17  E-value=2.6e-10  Score=107.68  Aligned_cols=163  Identities=15%  Similarity=0.046  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      .+...............+|.+.++ .+.+.... ...+...++..++.++.|+++||+|||     +.+..+..+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~i~~   82 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK-----PVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh-----HHHHHHHHHHHHHH
Confidence            333444444455555667776655 66665544 445666778888999999999999998     67766666655555


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286          334 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  413 (466)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  413 (466)
                      ......++.+...+...+.+.+.+...+.....+.+.+|+++|+++.++.+..... +..++|.+.+.+.+..+ |+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~~~g-~~~~~  160 (392)
T PRK10473         83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIMLKFP-WQSLF  160 (392)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcC-hHHHH
Confidence            55555556565555556666666666666777888888999999999999877666 77888988888877665 77777


Q ss_pred             HHHHHHHHHHHH
Q 012286          414 LALTSIFFLAAG  425 (466)
Q Consensus       414 ~~~~~~~~~~~~  425 (466)
                      ++.+.+.++...
T Consensus       161 ~~~~~~~~i~~~  172 (392)
T PRK10473        161 YTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            766655444433

>TIGR00898 2A0119 cation transport protein

Probab=99.16  E-value=3.2e-10  Score=110.93  Aligned_cols=138  Identities=11%  Similarity=-0.115  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhH--HHHHHHHHHhhhcchhhhcchhhhhhcc
Q 012286           40 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDN  117 (466)
Q Consensus        40 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~  117 (466)
                      +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566777888999999999999999999999999888887776544  4555566777777777788889999999


Q ss_pred             CCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccccc
Q 012286          118 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  180 (466)
Q Consensus       118 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  180 (466)
                      +|++.|++++|+.+....+|.+++|.+.+ + ...++..++.+.++..++..++.+ ++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            99999999999999999999999999988 3 345678888888887777766654 447654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.16  E-value=1.3e-07  Score=89.14  Aligned_cols=255  Identities=14%  Similarity=0.048  Sum_probs=155.6

Q ss_pred             hhhccccccccc-----ccchhHHHHHHHHHHHhh-hhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh----h-----
Q 012286           23 IHGSCRGDFKLN-----NFQDGVLSSAFMVGLLVA-SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F-----   87 (466)
Q Consensus        23 ~~~~i~~~~~~s-----~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~-----   87 (466)
                      ++-++++.+.++     .+.+.++-+...+..++. .++.+++++|++|++++-.....+....+++++.    +     
T Consensus        25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p  104 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP  104 (472)
T ss_pred             HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            455677777663     357888888888877777 8999999999999999988888777777776654    1     


Q ss_pred             ----------------------hHHHHHHHHHHhhhcchhhhc-chhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhh
Q 012286           88 ----------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  144 (466)
Q Consensus        88 ----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  144 (466)
                                            +.|...+.-+...+-...... .-..+.+|.++.+|-.|..+++..+.++|.++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  123333444455555455554 677899999999999999999999999999999988


Q ss_pred             hhhccC--------Ccchh----HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCcccc
Q 012286          145 GGVVGS--------HLNWR----YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSE  212 (466)
Q Consensus       145 ~~~l~~--------~~gwr----~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (466)
                      ..++.+        .-.|.    ..+.+.++.+++.. .+...+.+....  +++..+ .                    
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~l~~~~~~--~~~~~~-~--------------------  240 (472)
T TIGR00769       185 IKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAII-LLYWWVNRNVLT--DPRSYN-P--------------------  240 (472)
T ss_pred             HHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccC--Cccccc-h--------------------
Confidence            887762        11342    23333333333332 333332211100  000000 0                    


Q ss_pred             ccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh----H
Q 012286          213 DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM----M  288 (466)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  288 (466)
                      + +     +.+++       ++..+..++++.++++|.++.+.+...+++...+.+..-.-....+.+..+.+..    .
T Consensus       241 ~-~-----~~~k~-------k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~  307 (472)
T TIGR00769       241 A-L-----KEKKV-------KPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGD  307 (472)
T ss_pred             h-h-----ccccC-------CCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            0 0     00000       1123446788899999999988888777776666555433334444442221111    1


Q ss_pred             HHhhhhhhccccchhhhhhHhhhccc
Q 012286          289 FGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       289 ~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      +....++..++..++.+++.+|+|-+
T Consensus       308 ~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       308 FSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            22333444444555668888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.15  E-value=7.4e-10  Score=104.37  Aligned_cols=148  Identities=14%  Similarity=-0.030  Sum_probs=119.4

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHH-HHHHHHhhhhhhhHHHHHHHHHHh
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGSSFDFWSIAICRMLV   99 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~   99 (466)
                      ....|.+.+++|.++.+.+.+.+.+.++..++.++.+++.||.+ |+.+..+..+ .....++....++.+.+.+..++.
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  315 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW  315 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33457777889999999999999999999999999999999964 4444444444 333344445667788888899999


Q ss_pred             hhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHH
Q 012286          100 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  170 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  170 (466)
                      |++.+...+...+++.+..| +++++..+.......+|..+|+.++|.+.+..|++..+...+.+.++..+
T Consensus       316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            99999889988889999887 45778888888899999999999999999999999999988766554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.15  E-value=4.7e-10  Score=109.05  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      +...++..++...-......-+|.+.++ +|.+..+. +....+.++...+.+..|+++||+|||     +.+..+..+.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK-----RLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHH
Confidence            3444455555566666677778888765 66665443 555667777778889999999999999     7777777777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeeccc-CCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchh
Q 012286          330 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  408 (466)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  408 (466)
                      .+..+.....++.+..++.-.+.+++.+...+.....+.+.+ |+++|+++.|+....... |..+||.+.|.+.++.| 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~-g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC-
Confidence            776666666777777777777777777776665555565665 568999999999777776 99999999999999876 


Q ss_pred             hHHHHHHHHHHHHHHH
Q 012286          409 WRKTTLALTSIFFLAA  424 (466)
Q Consensus       409 ~~~~~~~~~~~~~~~~  424 (466)
                      |++.|++...+.++..
T Consensus       160 wr~~f~i~~~~~~~~~  175 (495)
T PRK14995        160 WGSVFLINVPIVLVVM  175 (495)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8888877665544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.14  E-value=2.9e-10  Score=110.80  Aligned_cols=163  Identities=14%  Similarity=0.101  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  332 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                      ..+..+.............|.+.++ +|.++... .......++..++.++.|++.||+|||     +.+..+..+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR-----RLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----HHHHHHHHHHHHH
Confidence            3444455555555566677776665 66665443 555677888999999999999999998     7776666666666


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHH
Q 012286          333 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  412 (466)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  412 (466)
                      .+.....++.+..++..++.+++.+...+.....+.+.+|+++|+++.++....... |..++|.+.|++.++.+ |++.
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLV-APALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HhhhhhccHhHhccCcC-ceeh
Confidence            666666677777777778888887777777888889999999999999999777666 88999999999998876 7777


Q ss_pred             HHHHHHHHHHHH
Q 012286          413 TLALTSIFFLAA  424 (466)
Q Consensus       413 ~~~~~~~~~~~~  424 (466)
                      ++......++..
T Consensus       159 f~~~~~~~~~~~  170 (485)
T TIGR00711       159 FLINVPIGIIVV  170 (485)
T ss_pred             hhhhhHHHHHHH
Confidence            776655544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11043 putative transporter; Provisional

Probab=99.14  E-value=4.4e-10  Score=106.56  Aligned_cols=155  Identities=16%  Similarity=0.090  Sum_probs=107.1

Q ss_pred             HHhhhhHhhhhhh--hhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH
Q 012286          263 FVIGAYSYWGPKA--GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  339 (466)
Q Consensus       263 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
                      ........+.|.+  +++.++.++... ...++..++..++.++.|++.||++||     +.+..+..+..+..+.....
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK-----PVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc-----HHHHHHHHHHHHHHHHHHHh
Confidence            3334445555554  455677776555 555677888899999999999999999     66666665555555555555


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHH
Q 012286          340 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      ++.+...+...+.+++.+...+.......+.+++++++...+..+..... +..++|.+.+.+.+..| |+..++.....
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~~~~~~~~  169 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVAL-SPALAPLLGAWLLNHFG-WQAIFATLFAI  169 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Confidence            56666665556666555544444556677888888888888887666666 77889999999998876 87777766555


Q ss_pred             HHHHH
Q 012286          420 FFLAA  424 (466)
Q Consensus       420 ~~~~~  424 (466)
                      .++..
T Consensus       170 ~~~~~  174 (401)
T PRK11043        170 TLLLI  174 (401)
T ss_pred             HHHHH
Confidence            44443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=7.6e-10  Score=104.82  Aligned_cols=149  Identities=13%  Similarity=0.197  Sum_probs=109.4

Q ss_pred             hhhcccccccccccchhHHHHHH-HHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh---hhh-hhHHHHHHHH-
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAF-MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR-   96 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~-~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r-   96 (466)
                      ..|.+.+++|.++++.+++.+.. .++..++.+++|++.||+|+|+.+..+..+..+..+..   ++. ++.+.+++.- 
T Consensus       232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            33456677999999999988665 45688999999999999999998887777666554433   343 4556555554 


Q ss_pred             ---HHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHH
Q 012286           97 ---MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus        97 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  173 (466)
                         +..|++.+...+....++.+.+|.++    .++.+...++|..+++.++|.+.+..||+..|.+.+.++++..++.+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               34556666667777777777777554    45555566777776777899999999999999999988877655544


Q ss_pred             hh
Q 012286          174 VI  175 (466)
Q Consensus       174 ~~  175 (466)
                      ..
T Consensus       388 ~~  389 (402)
T PRK11902        388 LM  389 (402)
T ss_pred             HH
Confidence            33

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.12  E-value=5.5e-10  Score=120.46  Aligned_cols=150  Identities=17%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             hhhccccccccccc-chhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 012286           23 IHGSCRGDFKLNNF-QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  101 (466)
Q Consensus        23 ~~~~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  101 (466)
                      ..+.+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+.++.+.+++..++.|+
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33355667899998 99999999999999999999999999999999999999998888888888899999999999999


Q ss_pred             cchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC-CcchhHHHHHhHHHHHHHHHHH
Q 012286          102 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      +.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+..
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  406 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYT  406 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            9999888899999999999999999999999999999888888776643 2356667776666554444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=1.2e-09  Score=104.42  Aligned_cols=151  Identities=8%  Similarity=-0.023  Sum_probs=98.4

Q ss_pred             hhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh--h--hhhHHHHHHHHH
Q 012286           23 IHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--S--SFDFWSIAICRM   97 (466)
Q Consensus        23 ~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~   97 (466)
                      ..|. +.+++|.+..+.++..+...+...++.++.|+++||+|||+.+.++.++..+......  .  .++....+..-.
T Consensus       265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (432)
T PRK10406        265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM  344 (432)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            3444 5567899988899989888888899999999999999999988776665443332211  1  122332222222


Q ss_pred             HhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhh-hhhhhhhhhhhccCCcc-hhHHHHHhHHHHHHHHHHHHh
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  174 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  174 (466)
                      +.+...+...+....+++|++|++.|++++|+.+...++ .....|.+.+.+.. .| |...++..++..++..+..++
T Consensus       345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            232333334455678899999999999999998765543 23347777775543 35 555666665555555554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.10  E-value=1e-09  Score=103.02  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHH
Q 012286          248 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  326 (466)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  326 (466)
                      +|.++...+................+.+-++.+++++.+. .+.+++.+...+.++..|++.||+|.|     +....+.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~v~~~~~  107 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----RWTVFST  107 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHH
Confidence            4566666666666666665555656666665688987766 455777888888899999999999999     6666666


Q ss_pred             HHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          327 FLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       327 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      .+..+..+.....     ++.+.+.+.-++.|++ +..+++....+.+.+|+++||++.|+.....+. |..+++++.+.
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~-G~~l~~~l~p~  185 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL-GVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            6655555544443     4666666666777765 556777777888889999999999998644444 65555444443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=2.1e-09  Score=89.86  Aligned_cols=311  Identities=13%  Similarity=0.096  Sum_probs=171.9

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchh
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  105 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  105 (466)
                      .+-+.++....++|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.++.|-.++++|++-|+..+.
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsL  140 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSL  140 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHH
Confidence            45567888888999888877778888889999999999999987766666655443 45678999999999999999998


Q ss_pred             hhcchhh-hhhccCCCCCchhHHHHHH--------hhhhhhhhhhhhhhhhccCCcc--hhHHHHHhHHHHHHHHHHHHh
Q 012286          106 FISLAAP-FIDDNAPVPQKTAWLSMFY--------MCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFV  174 (466)
Q Consensus       106 ~~~~~~~-~i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~  174 (466)
                      .+.+.-+ +++|..++  |+.-.-+..        .+..+=.+++.+.+..+.+.++  --.+|-..+.  ++.+-.. .
T Consensus       141 LFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAac--fLaigmA-v  215 (454)
T KOG4332|consen  141 LFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAAC--FLAIGMA-V  215 (454)
T ss_pred             HHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHH--HHHHHHH-H
Confidence            7776655 45565432  332222211        2233333444455555555443  2334433322  2222221 1


Q ss_pred             hccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHH
Q 012286          175 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  254 (466)
Q Consensus       175 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (466)
                      .+..+..+..++.+.+..                                          ..+.....+.+..++++..+
T Consensus       216 il~~W~ENygdps~~kdl------------------------------------------ltqf~gaa~aiaSD~ki~LL  253 (454)
T KOG4332|consen  216 ILSSWSENYGDPSENKDL------------------------------------------LTQFKGAARAIASDEKIALL  253 (454)
T ss_pred             HHhhhhhccCChhhhHHH------------------------------------------HHHhhHhHHHHhcchHHHHH
Confidence            223443343333332211                                          11122233445555555444


Q ss_pred             HHHHHHH-HHHhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          255 VLGYIAY-NFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       255 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      -..-.++ ...+..+..|.|..--+..+.+ ....+ +-+.+.+.+|+-+..++..|-..+..   ..+.+.+.+....+
T Consensus       254 G~iqsLFE~smytFVFLWTPaLspn~e~iP-hGfiF-atFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~l  328 (454)
T KOG4332|consen  254 GAIQSLFEGSMYTFVFLWTPALSPNDEEIP-HGFIF-ATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAAL  328 (454)
T ss_pred             HHHHHHHhhhhheeeeeecccCCCCcccCC-chhHH-HHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHHH
Confidence            4333333 3334444567776543322222 22222 23345555555555555544333321   33333333333333


Q ss_pred             HHHHHH-------hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHh
Q 012286          334 LTAFCL-------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  389 (466)
Q Consensus       334 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  389 (466)
                      .+....       .+.....+..++.-.+.+..+|.++-+-.+.+|++.|++.+-....-.++
T Consensus       329 ~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  329 LLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            322221       12334456666777888899999988888999999998776554433333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.08  E-value=1.3e-09  Score=102.95  Aligned_cols=149  Identities=11%  Similarity=0.044  Sum_probs=101.8

Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  343 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (466)
                      ........|.+. +.++.++... ...+...++..++.++.|+++||+|||     +.+..+..+..+..+.....++.+
T Consensus        24 ~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~   97 (394)
T PRK11652         24 QTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR-----PVILVGMSIFILGTLVALFAHSLT   97 (394)
T ss_pred             HHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHccHH
Confidence            333334455555 4467776554 455677888899999999999999998     666666555555555555555666


Q ss_pred             HHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHH
Q 012286          344 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  421 (466)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  421 (466)
                      ...+...+.+++.+...+.......+..++++++.+.+..+..... +..++|.+.+.+.+..| |+..+.+.....+
T Consensus        98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~  173 (394)
T PRK11652         98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV-SPLLAPLIGGLLTTLFG-WRACYLFLLLLGA  173 (394)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            6666666666655544444445556667778899999988766655 87889999999888766 8777776655433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.08  E-value=8.7e-10  Score=102.41  Aligned_cols=151  Identities=10%  Similarity=-0.041  Sum_probs=103.3

Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  343 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (466)
                      ...+...+|.+.+ .++.++.+. ...+...++..++.+..|++.||+|||     +.+.................++.+
T Consensus         7 ~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         7 WVTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR-----WFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             HHHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444555665555 477776665 555677888899999999999999987     555444443333322222224556


Q ss_pred             HHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHH
Q 012286          344 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      ...+.-++.+.+.+. ..+......+.+|+++|+++.++.+..... |..+++.+.+.+.++.| |+..|+..+.+.++.
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~l-G~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~  157 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYL-GIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence            666666666666654 333444457888999999999999876666 99999999999988766 988887766654444


Q ss_pred             H
Q 012286          424 A  424 (466)
Q Consensus       424 ~  424 (466)
                      .
T Consensus       158 ~  158 (368)
T TIGR00903       158 I  158 (368)
T ss_pred             H
Confidence            3

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.08  E-value=9.3e-10  Score=105.33  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=143.6

Q ss_pred             HHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccC--CchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           15 YVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        15 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      ....+....+|...++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++++..+++.+.+.++++++.+
T Consensus       312 ~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l  391 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL  391 (509)
T ss_pred             HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33344456677888899999999999999999999999999999999988  5567778888889999999999999999


Q ss_pred             HHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHHHHHHHHH
Q 012286           93 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVL  171 (466)
Q Consensus        93 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~  171 (466)
                      +..-.+.|+..|........++.|..+.++-..+.|+.....+++.++||++++.+.+..+ |...|+.+++..++....
T Consensus       392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~  471 (509)
T KOG2504|consen  392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL  471 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence            9999999999999888888899999999999999999999999999999999999998877 999999999887777766


Q ss_pred             HHhh
Q 012286          172 AFVI  175 (466)
Q Consensus       172 ~~~~  175 (466)
                      .++.
T Consensus       472 ~~~~  475 (509)
T KOG2504|consen  472 LLIL  475 (509)
T ss_pred             HHHh
Confidence            5544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.08  E-value=2.6e-09  Score=100.70  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=117.2

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchh
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  105 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  105 (466)
                      .+++.+|.++.+.|++.+...++..++++..+++.||+++|+.+..+. +.++...+.++.++++...+.-++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            455678999999999999999999999999999999999999888875 4445555566677888788888899999998


Q ss_pred             hhcchhhhhhccCCCCC-chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          106 FISLAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       106 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      ..+...+.+.+..|+++ +|++.++.+...++|..++..+.+.+ +.+|-|..+.+.+...++...+.+.+
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888766654 79999999999999999999988865 45566666666554444444444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.07  E-value=6.3e-10  Score=104.59  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=111.5

Q ss_pred             hHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 012286          268 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  346 (466)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
                      ....+|.+.++ +|.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+........++.+...
T Consensus        10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102         10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK-----PVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            34556666665 67776554 455677788889999999999999998     777777666666666666666666677


Q ss_pred             HHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHH
Q 012286          347 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  423 (466)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  423 (466)
                      +...+.+++.+...+.......+..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+...+...++.
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  158 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI-APLLAPIIGGWLLVWFS-WHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHH
Confidence            7777777777777777778888888889999999999877766 88899999999988766 777776655554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.07  E-value=2.3e-09  Score=100.07  Aligned_cols=169  Identities=15%  Similarity=0.116  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHhhhhhccccccc-ccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFK-LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-   86 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-   86 (466)
                      ..++.+.....+....+..-+|.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. 
T Consensus       215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~  294 (400)
T PF03825_consen  215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS  294 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444444434444556666 677778888888889999999999999999999999999999999998888887 


Q ss_pred             hhHHHHH----HHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHh-hhhhhhhhhhhhhhhccCCcc------hh
Q 012286           87 FDFWSIA----ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLN------WR  155 (466)
Q Consensus        87 ~~~~~l~----~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~g------wr  155 (466)
                      ++.+...    ....++|+..+..+.++..++.+..|++.|+++.++++. ..++|..+|..++|++.+++|      |.
T Consensus       295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~  374 (400)
T PF03825_consen  295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWS  374 (400)
T ss_pred             CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence            5544433    345679999999999999999999999999999999876 478999999999999998765      55


Q ss_pred             HHHHHhHHHHHHHHHHHHhhcc
Q 012286          156 YAFWGEAILMLPFAVLAFVIKP  177 (466)
Q Consensus       156 ~~f~~~~~~~~~~~~~~~~~~p  177 (466)
                      ..+.+.+.+.++..++.+++.+
T Consensus       375 ~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  375 AVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            5666666666666665555543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.06  E-value=8e-10  Score=99.16  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS   85 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~   85 (466)
                      ++-..+.||.+... +.....-+.++|++..+..++.-.-.+...++++++|++.||+|.|+++..+.++..+.++..-+
T Consensus       259 iA~~~~~DGv~til-~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~  337 (438)
T COG2270         259 IARFFYIDGVNTIL-AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF  337 (438)
T ss_pred             HHHHHHHhhHHHHH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH
Confidence            34455566665433 22222334599999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHH
Q 012286           86 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL  164 (466)
Q Consensus        86 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~  164 (466)
                      ...-..+.+.-.+.|...|..+..+.++.++..|+++-++.+|++......+..+||.+-+.+.+..| -|.-+....++
T Consensus       338 ~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl  417 (438)
T COG2270         338 LEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL  417 (438)
T ss_pred             ccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            77777778888999999999999999999999999999999999999999999999999998887554 56666555444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.06  E-value=1.1e-09  Score=117.63  Aligned_cols=152  Identities=11%  Similarity=0.062  Sum_probs=124.4

Q ss_pred             hhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh---------------
Q 012286           23 IHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------------   86 (466)
Q Consensus        23 ~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------------   86 (466)
                      ..|. +.+.+|.++.+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            3444 445689999999999999999999999999999999988887777777666666554443               


Q ss_pred             -----hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcchhHHHHH
Q 012286           87 -----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWG  160 (466)
Q Consensus        87 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~  160 (466)
                           ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++++.+. ...++...+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  406 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF  406 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence                 677888889999999999999999999999999999999999999999999999999998886 34567777776


Q ss_pred             hHHHHHHHHHHHHh
Q 012286          161 EAILMLPFAVLAFV  174 (466)
Q Consensus       161 ~~~~~~~~~~~~~~  174 (466)
                      .+.+.++.....+.
T Consensus       407 ~~~~~~~~~~~~~~  420 (1140)
T PRK06814        407 IALANLIVAILILR  420 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66655554444333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.05  E-value=5.1e-10  Score=98.51  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=101.4

Q ss_pred             hHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceee
Q 012286          287 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  366 (466)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (466)
                      ..+.+.+.+...+.++..|.++||+|||     ..+..+....++...+.....+. ..++..=+.+.......+...++
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~kgnl~v~rAi  144 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRK-----PVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIFKGNLSVIRAI  144 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCch-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccCchHHHHHH
Confidence            3566778899999999999999999999     77777777766666666555555 33333223333444556677889


Q ss_pred             eecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh---cchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012286          367 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD---HVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  435 (466)
Q Consensus       367 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
                      ++|.+++++|+.+++..+...++ |.++||.++|++..   ..|.|..++-...++......+..+..+.||
T Consensus       145 isdV~sek~r~l~ms~v~~a~~l-GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGL-GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhc-chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999888887 99999999999987   5676655554444444444423433334444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.05  E-value=2e-09  Score=97.40  Aligned_cols=146  Identities=10%  Similarity=0.039  Sum_probs=115.0

Q ss_pred             HHHHHHhhhhhccc--ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           15 YVLLVAGFIHGSCR--GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        15 ~~~~~~~~~~~~i~--~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      .+....+.....+.  +.+|+++++.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.++....++...+
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~  234 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM  234 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34443333333443  2479999999999999999999999999999999999999988888888877666555544333


Q ss_pred             HHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHH
Q 012286           93 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  163 (466)
Q Consensus        93 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  163 (466)
                       ..-++.|++.+..+|...+...+..|++ .+++.++. ....+|.+++|++.|.+.|..|.+..|++..+
T Consensus       235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       235 -WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence             3556889999999999999999988865 56666765 56678999999999999998899998885543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.05  E-value=2.9e-09  Score=95.63  Aligned_cols=151  Identities=17%  Similarity=0.036  Sum_probs=123.9

Q ss_pred             hhhhh-cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh-------hH---
Q 012286           21 GFIHG-SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DF---   89 (466)
Q Consensus        21 ~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~---   89 (466)
                      +..+| .++++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++........++..+.+...       +.   
T Consensus       238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~  317 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF  317 (417)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence            34444 56788999999999999999999999999999999999999999998888888888776653       33   


Q ss_pred             -HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHHHHH
Q 012286           90 -WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLP  167 (466)
Q Consensus        90 -~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~  167 (466)
                       ..++...+..|+|.|.    ...++..++|+ +-|.+.|+.....++|...-|..-+...+..| ++..|++...+.++
T Consensus       318 ~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~  392 (417)
T COG2223         318 VAVFLALFVFAGLGNGS----VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV  392 (417)
T ss_pred             HHHHHHHHHHhccCcch----heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence             3355566777777764    55777777775 58999999999999999888888888777766 99999999998888


Q ss_pred             HHHHHHhhc
Q 012286          168 FAVLAFVIK  176 (466)
Q Consensus       168 ~~~~~~~~~  176 (466)
                      +.++.+...
T Consensus       393 a~v~~~~~y  401 (417)
T COG2223         393 ALVLTWALY  401 (417)
T ss_pred             HHHHHHHHH
Confidence            888777665

>TIGR00896 CynX cyanate transporter

Probab=99.04  E-value=7.2e-10  Score=103.19  Aligned_cols=132  Identities=15%  Similarity=0.047  Sum_probs=106.9

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV   99 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   99 (466)
                      ....|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+.++.+++.++..+.++.+... .-++.
T Consensus       217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            3445666677899999999999999999999999999999999 567777788888888877777665443332 45788


Q ss_pred             hhcchhhhcchhhhhhccCC-CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc
Q 012286          100 GVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  153 (466)
Q Consensus       100 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  153 (466)
                      |++.+...|...+.+.+..+ +++++...++.+....+|..++|.+.|.+.++.|
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999888887777765554 5567899999998889999999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.03  E-value=1.8e-08  Score=99.26  Aligned_cols=150  Identities=17%  Similarity=0.120  Sum_probs=123.7

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhhhhh--------HHHHHHHH
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAICR   96 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r   96 (466)
                      .+.+.+|.+.++...+...+....-+..+++|.++|++ ||++.+.++.++..+|.++.+++..        ....+++-
T Consensus        13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL   92 (654)
T TIGR00926        13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL   92 (654)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence            44556888888888888888888889999999999975 9999999999999999988876421        23466778


Q ss_pred             HHhhhcchhhhcchhhhhhccCCCC---CchhHHHHHHhhhhhhhhhhhhhhhhccCC-------cchhHHHHHhHHHHH
Q 012286           97 MLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILML  166 (466)
Q Consensus        97 ~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~~~~  166 (466)
                      .+..+|.|++-|...+...|.++++   +|...+.++..+.++|..+++.+.+++.+.       .+|...|.+.++..+
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~  172 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI  172 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence            8888999999999999999999864   366789999999999999999998888633       369999999998877


Q ss_pred             HHHHHHHhh
Q 012286          167 PFAVLAFVI  175 (466)
Q Consensus       167 ~~~~~~~~~  175 (466)
                      +..++....
T Consensus       173 ia~lvf~~g  181 (654)
T TIGR00926       173 LALIVFMAG  181 (654)
T ss_pred             HHHHHHHHh
Confidence            776665443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.03  E-value=2.1e-09  Score=98.06  Aligned_cols=160  Identities=21%  Similarity=0.298  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccc--cchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh
Q 012286            9 LAMIKEYVLLVAGFIHGSCRGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS   86 (466)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   86 (466)
                      ..+...++........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            344444566666667777777777666  478999999999999999999999999999998888887766666777777


Q ss_pred             hh--HHHHHHHHHHhhhcchhhhcchhhhhhccCCC-CCchhHHHHHHh-hhhhhhhhhhhhhhhccCC--cchhHHHHH
Q 012286           87 FD--FWSIAICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWG  160 (466)
Q Consensus        87 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~gwr~~f~~  160 (466)
                      .+  .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|..
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            66  89999999999999999999999999999998 678999999888 5888889998777766543  579997777


Q ss_pred             hHHHHHHH
Q 012286          161 EAILMLPF  168 (466)
Q Consensus       161 ~~~~~~~~  168 (466)
                      ........
T Consensus       170 ~~~~~~~~  177 (338)
T COG0477         170 AALLGLLL  177 (338)
T ss_pred             HHHHHHHH
Confidence            66554433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.02  E-value=7.8e-09  Score=93.46  Aligned_cols=126  Identities=15%  Similarity=0.124  Sum_probs=98.5

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhc----ccCCchhhHh-HHHHHHHHHHhhhhhhhHH-------
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGV-GLSVWTFATAGCGSSFDFW-------   90 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~~-------   90 (466)
                      .+|+..+++|++....+.+--+..+...+.+|+.|..+|    ||||||.++. +.+...++.++.+++.++.       
T Consensus        54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~  133 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE  133 (498)
T ss_pred             cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence            445566789999998888888888899999999999999    4898776554 5666677777777775543       


Q ss_pred             ----------HHHHHHHHhhhcchhhhcchhhhhhccCCCCCchh-HHHHHHhhhhhhhhhhhhhhhhc
Q 012286           91 ----------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus        91 ----------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                                .++++--+.=+..-.....+-+++.|...++++.+ +.+++.....+|..+|..++++.
T Consensus       134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                      33444444455565677889999999998776666 99999999999999999988754

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=5.6e-09  Score=98.73  Aligned_cols=146  Identities=9%  Similarity=0.032  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHH
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  329 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  329 (466)
                      ++..++..+...+.........|.+ ++.++.++.+. ...+...++..++.+..|++.||+|||     +.+..+..+.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----~~~~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK-----AGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            3344444555555555555666655 66688886555 555777889999999999999999999     7776666665


Q ss_pred             HHHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          330 AISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       330 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      ++..++...   .++.+.+.+..++.+.+.+...+..+....+..|++++++..++.+...+. |..++|.+.+.+.
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~~g~~i~~~l~  154 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPF-GSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            555544322   235566667777788888888887778877888888999999999877777 8889998888774

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.01  E-value=8.3e-09  Score=95.42  Aligned_cols=129  Identities=12%  Similarity=0.014  Sum_probs=105.8

Q ss_pred             hhhhhhhhhccccchh-h-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 012286          271 WGPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  348 (466)
Q Consensus       271 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (466)
                      +...++.+.+|++..+ . .+......+..+..+.+|++.||+|.|     +.+....+...+..++..+..+...+.+.
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~  121 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLM  121 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666678998766 4 555677888899999999999999999     78877777777777777777788888888


Q ss_pred             HHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch
Q 012286          349 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  407 (466)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  407 (466)
                      -++.|++.+..+ ....++.+-+|+++|+++.|+.+....+ |.++++++.+++ ...|
T Consensus       122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~v-G~~Ia~~L~qll-~s~g  177 (511)
T TIGR00806       122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLL-GVFLSSVLGQLL-VTLG  177 (511)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhcC
Confidence            888999988888 7888889999999999999999887777 999999898884 4444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.00  E-value=4.4e-10  Score=101.69  Aligned_cols=154  Identities=11%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             hhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012286          277 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  355 (466)
Q Consensus       277 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (466)
                      ++.++.++... ++.....+...+..++.|++.||+.|+     .++..+..+-.+..+...+....|...++=.+.|++
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG  134 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44466665444 666777888889999999999999998     666666555555555555557788888888899999


Q ss_pred             HHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012286          356 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  435 (466)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (466)
                      -....+..++++++.+|.++|+++.++.+..... |..+|-.....+.+..+.|++++...+++.++.+++.++...-|+
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv-GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV-GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhccc-ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999998888 888888888888888888999998888877776666665444444


Q ss_pred             c
Q 012286          436 I  436 (466)
Q Consensus       436 ~  436 (466)
                      |
T Consensus       214 r  214 (493)
T KOG1330|consen  214 R  214 (493)
T ss_pred             c
Confidence            3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.00  E-value=2e-09  Score=100.30  Aligned_cols=114  Identities=9%  Similarity=-0.034  Sum_probs=96.1

Q ss_pred             hhhhcccccccccccchhHHHHHHH-HHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh-----------hhH
Q 012286           22 FIHGSCRGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------FDF   89 (466)
Q Consensus        22 ~~~~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~   89 (466)
                      ...|...+++|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.
T Consensus       230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            3455555568999999998887665 6788999999999999999999999988888777665543           456


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhh
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  135 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  135 (466)
                      +.+....++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7788889999999999999999999999999999999999887654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.99  E-value=3.8e-09  Score=97.31  Aligned_cols=168  Identities=16%  Similarity=0.053  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF   87 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~   87 (466)
                      +.+++.|.....+-..+=--.||++..+.-.|........+-.+.-++.+++..|+|+-+++.+++.+..+=.+.....+
T Consensus       378 ~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            34444455444433333334567887888889888888889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHh-hhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHH
Q 012286           88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  166 (466)
Q Consensus        88 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~  166 (466)
                      |.|+.+-..+++|+..+..+.++.+|++...||+-|..+.++.+. ..++|--+|.++||.+.+.++=|..|.+.++.++
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl  537 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACL  537 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998754 5788999999999999999999999999998888


Q ss_pred             HHHHHHHhh
Q 012286          167 PFAVLAFVI  175 (466)
Q Consensus       167 ~~~~~~~~~  175 (466)
                      +..++...+
T Consensus       538 ~~l~~~~~i  546 (618)
T KOG3762|consen  538 VTLALFISI  546 (618)
T ss_pred             HHHHHHHHh
Confidence            776665544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.98  E-value=5.6e-09  Score=99.06  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             hhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012286          277 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  355 (466)
Q Consensus       277 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (466)
                      .+.++.+.... ...+++.++..++.++.|+++||+|||     +.+..+..+..+..+.....++.+...+.-++.|++
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~  117 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR-----PVLITGALIFTLACAATLFTTSMTQFLIARFIQGTS  117 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch-----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566665443 445677788889999999999999999     777666666666655555566766666666666666


Q ss_pred             HHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286          356 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      .+...+.......+.+++++++++.++.+..... +..++|.+.+.+.+..| |+..|++.+...++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~  184 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV-APIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            5543333445566777888899999998877776 88889988888888765 8888877666544443

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=9.1e-09  Score=98.20  Aligned_cols=145  Identities=10%  Similarity=-0.123  Sum_probs=115.5

Q ss_pred             hhhhcc-cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 012286           22 FIHGSC-RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG  100 (466)
Q Consensus        22 ~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  100 (466)
                      ...+.+ ++++|.++.+.++..+.+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.+ -+..-.+.|
T Consensus       280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g  358 (438)
T PRK10133        280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCS  358 (438)
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            333343 467899999999999999999999999999999999999999998888777766666655543 245677899


Q ss_pred             hcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHHHhHHHHHHHH
Q 012286          101 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA  169 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~  169 (466)
                      ++.+..+|...+...|..|++ .+.+.++... ..+|..++|.+.|.+.+..| -|..|++..+..+...
T Consensus       359 lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999999998764 6677777764 44688888889899988887 7888887655444333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=1.8e-08  Score=85.17  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=110.1

Q ss_pred             cccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHH-HHHHhhhhhhhHHHHHHHHHHhhhcch
Q 012286           26 SCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT-FATAGCGSSFDFWSIAICRMLVGVGEA  104 (466)
Q Consensus        26 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~  104 (466)
                      ..++.||+|+...+.+.+....-.++.+++.|.++||+|++-..+.+..+.. ++-....+  +++.=+.+..+.|+...
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence            4678999999999999998888899999999999999999988777655443 33333333  33344556677888777


Q ss_pred             hhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc---hhHH-HHHhHHHHHHHHHHHH
Q 012286          105 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYA-FWGEAILMLPFAVLAF  173 (466)
Q Consensus       105 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr~~-f~~~~~~~~~~~~~~~  173 (466)
                      ..-......++...|+++.|++.+..+...++|..+.|.+++.+.++-|   |--. |+..+.+++....+.+
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~  440 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF  440 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence            6555566677778899999999999999999999999999999997654   4444 4444554444444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.93  E-value=1.5e-08  Score=94.83  Aligned_cols=158  Identities=12%  Similarity=-0.034  Sum_probs=125.9

Q ss_pred             hhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh----hH--H---HHHH
Q 012286           24 HGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DF--W---SIAI   94 (466)
Q Consensus        24 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~--~---~l~~   94 (466)
                      ...+-++-|++..+..+.+....+...+..+.+..+.||+|||+.++.+..+..+..+++....    ..  |   ..++
T Consensus       293 st~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  293 STSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3456677899999999999999999999999999999999999999999999999888876541    12  1   1233


Q ss_pred             HHHHhhhcch-hhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHH
Q 012286           95 CRMLVGVGEA-SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus        95 ~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  173 (466)
                      +.++..++.+ +.-|...-+.+|.+|++.|+.++++......+...+-...-..+.+..|= ..|++..+++++..+..+
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~  451 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY  451 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence            4444443333 24678889999999999999999999998888887777666666666664 788888899999999999


Q ss_pred             hhccccccC
Q 012286          174 VIKPLQLKG  182 (466)
Q Consensus       174 ~~~p~~~~~  182 (466)
                      +.+||++.+
T Consensus       452 ~~lPETkgr  460 (485)
T KOG0569|consen  452 RYLPETKGR  460 (485)
T ss_pred             HhCcccCCC
Confidence            999997643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.92  E-value=1.3e-08  Score=98.58  Aligned_cols=153  Identities=14%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             hhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhH--------hHHHHH--HHHHHhhhh-hhhH
Q 012286           22 FIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG--------VGLSVW--TFATAGCGS-SFDF   89 (466)
Q Consensus        22 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~--------~~~~~~--~~~~~~~~~-~~~~   89 (466)
                      .-+|. +.+++|.+..+.++..++..++..++.++.|+++||+++|+...        .+....  .+..+.... ..+.
T Consensus       282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            34454 45678999999999999999999999999999999987554321        111111  111111111 2344


Q ss_pred             HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc---chhHHHHHhHHHHH
Q 012286           90 WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILML  166 (466)
Q Consensus        90 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~  166 (466)
                      ...++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+..   +|+..|.+.++..+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~  440 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI  440 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence            4444455555555555555555566677765 7999999999999999999999999887643   49999999987777


Q ss_pred             HHHHHHHhh
Q 012286          167 PFAVLAFVI  175 (466)
Q Consensus       167 ~~~~~~~~~  175 (466)
                      +..++..+.
T Consensus       441 i~~i~~~~~  449 (465)
T TIGR00894       441 LCVIFYLIF  449 (465)
T ss_pred             HHHHHeeee
Confidence            766554443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.91  E-value=5.1e-09  Score=90.89  Aligned_cols=336  Identities=10%  Similarity=-0.015  Sum_probs=211.8

Q ss_pred             ccccccccchh-HHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhh
Q 012286           29 GDFKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  107 (466)
Q Consensus        29 ~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  107 (466)
                      .+.|++..+.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-+..|...+ ..
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE  112 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE  112 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence            45566655542 33445566677777888889999999999999988888888999999999999999999999887 45


Q ss_pred             cchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCc--chhHHHHHhHHHHHHHHHHHHhhccccccCCCC
Q 012286          108 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP  185 (466)
Q Consensus       108 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~  185 (466)
                      .+-++++-+..+|+++.++.+...++.-.|...|..++..+.+..  +++..-.+.-....+..++.+ ++|..++..-.
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~-fLP~v~rSl~f  191 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLAL-FLPRVKRSLYF  191 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHh-hCCCCchhhhh
Confidence            568899999999999999999999999999999998888877542  333333333222223333333 33432211000


Q ss_pred             CccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHh
Q 012286          186 AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI  265 (466)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (466)
                      ...+++.         .        ..+.++..    .+.+..+.........+++++...+||.+....+-+.+...++
T Consensus       192 ~~~~~~~---------~--------v~~~e~~~----~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~  250 (433)
T KOG3810|consen  192 HRLEDKI---------S--------VGDLEEMN----PQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGY  250 (433)
T ss_pred             hcccccc---------e--------eccchhcC----ccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchh
Confidence            0000000         0        00000000    0000000011233445567777888999988888888888888


Q ss_pred             hhhHhhhhhhhhhhccccchhh---HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhH
Q 012286          266 GAYSYWGPKAGYNIYHMSNADM---MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  342 (466)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (466)
                      +-..+|....-++.- .++...   ..=++..+.++++.+..|.+--...|+..   .++..+...-+...+.+....+.
T Consensus       251 ~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~~I  326 (433)
T KOG3810|consen  251 YQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQHI  326 (433)
T ss_pred             HHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhcccce
Confidence            777777766555432 222111   11234455566667777777544444321   34444555555555666666777


Q ss_pred             HHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhc
Q 012286          343 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  391 (466)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  391 (466)
                      |...+...+.........+.....++.....|.-|-..|+.....-++-
T Consensus       327 w~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQ  375 (433)
T KOG3810|consen  327 WVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQ  375 (433)
T ss_pred             ehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHH
Confidence            8777777777777766666666677777778888888988765544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.91  E-value=5.2e-09  Score=82.93  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=93.5

Q ss_pred             hhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeeccc
Q 012286          292 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  371 (466)
Q Consensus       292 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (466)
                      ...++..++.++.+++.||++||     +.+...........+.....++.+.......+.+++.+...+.......|..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            34566778889999999999998     6665555555555544445566666666677777777777777778888989


Q ss_pred             CCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286          372 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       372 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      |+++|+++.++.+...+. |..++|.+.+.+.+..+ |...+...........
T Consensus        81 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        81 PPEERGVALGLMSAGIAL-GPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAF  131 (141)
T ss_pred             ChhhhhHHHHHHHHhHHH-HHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHH
Confidence            999999999999877777 88999999999988765 6666666555443333

>PRK09848 glucuronide transporter; Provisional

Probab=98.90  E-value=6.8e-09  Score=99.85  Aligned_cols=133  Identities=10%  Similarity=0.005  Sum_probs=104.8

Q ss_pred             hhhhhcc-cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh--hHHHHHHHHH
Q 012286           21 GFIHGSC-RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRM   97 (466)
Q Consensus        21 ~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~   97 (466)
                      ....|.+ ++.+|.++...++......++..++.++++++.||+|+|+.+.++.++..++.++..+.+  +++.+++..+
T Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  327 (448)
T PRK09848        248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA  327 (448)
T ss_pred             hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            3344543 445676655445545555677888999999999999999999999998888877776643  6777777888


Q ss_pred             HhhhcchhhhcchhhhhhccCCCC-------CchhHHHHHHhhhhhhhhhhhhhhhhccCCcc
Q 012286           98 LVGVGEASFISLAAPFIDDNAPVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  153 (466)
Q Consensus        98 l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  153 (466)
                      +.|+|.+...+...++.+|..|.+       ++|...+..+....+|..+|+.+.+.+.+..|
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999988754       35899999999999999999998887654433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.89  E-value=1.9e-08  Score=97.20  Aligned_cols=133  Identities=17%  Similarity=0.033  Sum_probs=102.6

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh-----hhhHHHHHHH
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAIC   95 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~   95 (466)
                      ....+...+...-+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+     .++.+.+++.
T Consensus       251 ~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  330 (473)
T PRK10429        251 NGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIA  330 (473)
T ss_pred             hhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence            33444555544445566777777777899999999999999999999999888877666655432     3566777778


Q ss_pred             HHHhhhcchhhhcchhhhhhccCC-------CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc
Q 012286           96 RMLVGVGEASFISLAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  153 (466)
Q Consensus        96 r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  153 (466)
                      -++.|++.+...+...++++|..|       +++.|..++......-+|..+++.+.|++.+..|
T Consensus       331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            889999999999999999999966       3334568899999999999999999888765433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.2e-08  Score=90.70  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeee
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  367 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (466)
                      .+.+...+.+++.+++.|.+.||+|+|     ..++.+........+++.+.++.+..++.=.+-+.+.........+++
T Consensus       110 ~LFaskA~~qllvnp~~G~l~~~iGy~-----ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  110 LLFASKALVQLLVNPFFGNLIDRIGYK-----IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHhccc-----cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            444667888999999999999999999     556666666666666666677777777777888888888888889999


Q ss_pred             ecccCCc-hhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          368 LHSVKPS-LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       368 ~~~~~~~-~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      ++.+|+| +|++++|+.-.+... |-.+||+++|.++|..| +..+|.+++.++++-..+-++
T Consensus       185 Ad~f~~d~er~~vmGialgfisl-G~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISL-GVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhc-cceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHh
Confidence            9999985 789999999776666 99999999999999988 788999988877766655553

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.83  E-value=3.9e-08  Score=94.68  Aligned_cols=175  Identities=14%  Similarity=0.132  Sum_probs=118.0

Q ss_pred             hchhHHHHHHHHHHHHHH----HhhhhHhhhhhhhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          246 LQEKVYVVNVLGYIAYNF----VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      +++++++..+....+...    ........++....+. |.++...++.....+...++.++.|+++|.+|||     ..
T Consensus        37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~di-G~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----~~  110 (599)
T PF06609_consen   37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADI-GGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----YF  110 (599)
T ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----HH
Confidence            355666655443333222    2222223345455554 4455455566667788888899999999999999     88


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      ++++.++..+..++....++...++....+.+++.+.... ....+.|..|.+.|..+.++... ..+.....+|.+...
T Consensus       111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~-~~i~~~~~~~~ia~~  188 (599)
T PF06609_consen  111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASI-PFIITTWISPLIAQL  188 (599)
T ss_pred             HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHH-HHHhhhcccHHHHHH
Confidence            8888888888888888888888888888888777654432 34456888888999888877643 334355567766666


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          402 LQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       402 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      +..+ ++|++.+++......++.++.++
T Consensus       189 ~~~~-~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  189 FAAH-SGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             hccC-CCcchHHHHHHHHHHHHHHHHHH
Confidence            5544 46999998887765555544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.83  E-value=4.1e-08  Score=93.82  Aligned_cols=137  Identities=15%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             HHHHHHHhhhhhccccc-ccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh--hHH
Q 012286           14 EYVLLVAGFIHGSCRGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFW   90 (466)
Q Consensus        14 ~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~   90 (466)
                      ...........+...++ ++.+ ...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  |.+
T Consensus       238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (428)
T PF13347_consen  238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPW  316 (428)
T ss_pred             HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHH
Confidence            33333334344444444 4433 6778888899999999999999999999999999999999999999998886  999


Q ss_pred             HHHHHHHHhhhcchhhhcchhhhhhccCCC-------CCchhHHHHHHhhhhhhhhhhhhhhhhccCC
Q 012286           91 SIAICRMLVGVGEASFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH  151 (466)
Q Consensus        91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~  151 (466)
                      .+++.-++.|++.+...+...++++|..+.       ++.|..++..+....+|..+++.+.+.+.+.
T Consensus       317 ~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  317 LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999873       3458899999999999999999988876543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.81  E-value=1.3e-08  Score=97.90  Aligned_cols=125  Identities=10%  Similarity=-0.018  Sum_probs=110.9

Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhh----------hhHHHHHHHHHH
Q 012286           29 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------FDFWSIAICRML   98 (466)
Q Consensus        29 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l   98 (466)
                      +++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+...-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5789999999999999999999999999999999999999999999999988664311          344455667788


Q ss_pred             hhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc
Q 012286           99 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  153 (466)
Q Consensus        99 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  153 (466)
                      .+++.+..+.+...++.+..|++++++..++.....++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999887665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.79  E-value=1.7e-08  Score=100.28  Aligned_cols=125  Identities=8%  Similarity=-0.054  Sum_probs=89.3

Q ss_pred             hhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh-------------
Q 012286          275 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-------------  340 (466)
Q Consensus       275 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  340 (466)
                      -+++.++.+..+. .+.+...++..++.++.+++.||.+||     +++..+.++..+..++....+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4556688775554 556778889999999999999999998     555445444444444333221             


Q ss_pred             --------------------------------------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHH
Q 012286          341 --------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  382 (466)
Q Consensus       341 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  382 (466)
                                                            ....+++.-++.|++.+..++....++.|.+|+++|+...|+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  112334555666666667777778888999999999999999


Q ss_pred             HHHHHHhhcccCccchhHHhhhc
Q 012286          383 STVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       383 ~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      .+....+ |..+|+.+.+.+.+.
T Consensus       213 ~~~~~~i-G~~lG~llgg~l~~~  234 (633)
T TIGR00805       213 LESIAVF-GPAFGYLLGSFCLQI  234 (633)
T ss_pred             HHHHHHh-hhHHHHHHHHHHHhc
Confidence            9766666 889999888888754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PTZ00207 hypothetical protein; Provisional

Probab=98.79  E-value=6.9e-08  Score=93.55  Aligned_cols=152  Identities=15%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH----
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----  339 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  339 (466)
                      .+.+..+.|. +++.+|.+..+. ....+. .......++.|++.||+|+|     +.+..+.++..+..++....    
T Consensus        43 ~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R-----~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPR-----PIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            4445555554 466688886554 222222 22223455789999999999     77777766666665555443    


Q ss_pred             --hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccC-ccchhHHhhhcchhhHHHHHHH
Q 012286          340 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP-SSPLVGVLQDHVNNWRKTTLAL  416 (466)
Q Consensus       340 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~  416 (466)
                        ++.+.+.+..++.+.+.+...+.......+.+ |++||.+.|+......+ |.++ ++...+.+.+   ++...+++.
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gL-GsaI~~~l~~~l~~~---~~~~~fl~l  190 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGL-GSAILGSIQLAFFSD---NTSAYFFFL  190 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---hHHHHHHHH
Confidence              35566666666666666655555555556655 58899999999887777 6654 5544444443   355556555


Q ss_pred             HHHHHHHHHHHH
Q 012286          417 TSIFFLAAGIWF  428 (466)
Q Consensus       417 ~~~~~~~~~~~~  428 (466)
                      +...++..++..
T Consensus       191 ~vl~~vv~ll~~  202 (591)
T PTZ00207        191 MSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            555444443333

>PRK09669 putative symporter YagG; Provisional

Probab=98.78  E-value=4.3e-08  Score=94.14  Aligned_cols=132  Identities=13%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhh--hhhHHHHHHHHHHhh
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SFDFWSIAICRMLVG  100 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G  100 (466)
                      ..+...++.--+++..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+  .++.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            334444433223334455666777888889999999999999999999888766654443222  357777888889999


Q ss_pred             hcchhhhcchhhhhhccCCC-------CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcch
Q 012286          101 VGEASFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  154 (466)
Q Consensus       101 ~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  154 (466)
                      ++.+...+...++++|..+.       ++.|..++..+....+|..+|+.+++.+.+..|+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998862       2345678889999999999999999887765544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.76  E-value=8.8e-08  Score=90.78  Aligned_cols=142  Identities=13%  Similarity=0.030  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhh----hcccccchhHHHHHHHHHH
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ----MGATISNAFKLLSAATFLG  329 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~~~~  329 (466)
                      ....+...+.+.....+++.|+++ .+.+.... ....+..+.+.+..++.|+++||    +|||+    ..+..+....
T Consensus        10 ~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr----p~il~g~~~~   84 (477)
T TIGR01301        10 ASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR----PFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH----HHHHHHHHHH
Confidence            333444455566666777777755 66665444 44456678888899999999995    88873    4444434444


Q ss_pred             HHHHHHHHHHhhH-----------------HHHHHHHHHHHHHHHhcCccceeeeecccCCchh--hHHHHHHHHHHHhh
Q 012286          330 AISCLTAFCLSSL-----------------YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR--ALSMAISTVSIHIF  390 (466)
Q Consensus       330 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~  390 (466)
                      .....++....+.                 +..++...+..+..+...++..+++.|..|+++|  +.+.++.+...++ 
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l-  163 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI-  163 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH-
Confidence            4443333332221                 2233333445556667778888999999998754  6788888777777 


Q ss_pred             cccCccchhHHh
Q 012286          391 GDVPSSPLVGVL  402 (466)
Q Consensus       391 g~~~~~~~~g~l  402 (466)
                      |+++++.+.+..
T Consensus       164 G~ilg~~~g~~~  175 (477)
T TIGR01301       164 GNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHH
Confidence            888888776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.75  E-value=2.1e-08  Score=69.10  Aligned_cols=81  Identities=25%  Similarity=0.276  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           13 KEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        13 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      .|.....+++++|.|++|.++|.++.|++.+...+||.+|++...++.++..+++.+..+.+...+..+.+++.++++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            35667788999999999999999999999999999999999999999999889999999999999999999999988765


Q ss_pred             H
Q 012286           93 A   93 (466)
Q Consensus        93 ~   93 (466)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.72  E-value=2e-08  Score=88.21  Aligned_cols=126  Identities=7%  Similarity=0.023  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHH----HHHHHHHHhhhcchhhhcchhhhhhccCC
Q 012286           44 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW----SIAICRMLVGVGEASFISLAAPFIDDNAP  119 (466)
Q Consensus        44 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  119 (466)
                      +..+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-.    ++..+|++.    .+.+.+.+.|..|.+|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYP  464 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccc
Confidence            33555667899999999999999999999999999998887764433    234455544    3455678999999999


Q ss_pred             CCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          120 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       120 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      .+-|+...|.-+.+.-+|.++.|.++  +....+-..+..+.+.++++..+...++
T Consensus       465 TavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  465 TAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence            99999999999999999999999998  3222334556666777767776666655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2e-07  Score=82.26  Aligned_cols=162  Identities=17%  Similarity=0.083  Sum_probs=129.9

Q ss_pred             HHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhhhhhHHHH
Q 012286           14 EYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSI   92 (466)
Q Consensus        14 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l   92 (466)
                      .+..++.-.-+|.+..|-|+|..+.|++.+...+.....++....+.+|. ++|+..+...+++.++.+.+.+.+.-..+
T Consensus       221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~  300 (395)
T COG2807         221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI  300 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33344444568899999999999999999999999999999999999975 68888888899999998888887655444


Q ss_pred             HHHHHHhhhcchhhhcchhhhhhccCCCC-CchhHHHHHHhhhhhhhhhhhhhhhhccCCc-chhHHHHHhHHHHHHHHH
Q 012286           93 AICRMLVGVGEASFISLAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  170 (466)
Q Consensus        93 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~  170 (466)
                      +. -++.|+|.|..+|.+...+.+..+.. +-++..++.+....+=...||.+.|++-|.. +|+.++.......+...+
T Consensus       301 lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         301 LW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             HH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            44 49999999999999999999987654 3455556666666666677899999998865 599999988887777776


Q ss_pred             HHHhhc
Q 012286          171 LAFVIK  176 (466)
Q Consensus       171 ~~~~~~  176 (466)
                      ..+..-
T Consensus       380 ~Gl~a~  385 (395)
T COG2807         380 FGLRAG  385 (395)
T ss_pred             HHhhcc
Confidence            666553

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.66  E-value=4.5e-08  Score=90.16  Aligned_cols=180  Identities=12%  Similarity=0.054  Sum_probs=128.0

Q ss_pred             hhc-hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcc----ccchhh-HHHhhhhhhccccchhhhhhHhhh-cccccc
Q 012286          245 LLQ-EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH----MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISN  317 (466)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~  317 (466)
                      .++ .|.++.+...-+.--+.++++...+..|++.+.+    +++.++ .+...+....-+..+++||++||+ |+|   
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---   92 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---   92 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh---
Confidence            344 3556666666677778888888888888887777    775544 333333322334578899999995 666   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCc--hhhHHHHHHHHHHHhhccc
Q 012286          318 AFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDV  393 (466)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~  393 (466)
                        +.+..+.++..+.-+++...  .......+.+.+...+.+..=+...++..+.+|++  .|-.+.++..+..++ |+.
T Consensus        93 --~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi-Gsl  169 (498)
T COG3104          93 --RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI-GSL  169 (498)
T ss_pred             --HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh-HHH
Confidence              55655555555555555544  34555666666666888888888888889998873  577778888778888 899


Q ss_pred             CccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012286          394 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  431 (466)
Q Consensus       394 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
                      ++|.+.+++.+..| |...|...++....+.+.+...+
T Consensus       170 ~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         170 IAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999987 88888888877777776666544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=2.3e-07  Score=87.96  Aligned_cols=145  Identities=19%  Similarity=0.296  Sum_probs=112.6

Q ss_pred             hccccchh-hHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Q 012286          279 IYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELL  355 (466)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  355 (466)
                      .+.++..+ ..+.+....+.+++.+.++++.||+|.|     +.+..+.++.++..++.....  +.+..+++=++.|++
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR-----RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            34555333 3555677899999999999999999999     777777766666655554443  334556777888889


Q ss_pred             HHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          356 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      .+..+|....+..+-.|+++|++..++.....+. |.+++-++.|.+.+...+|+..|++.+.+.++..++++.
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~-g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~  214 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQL-GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL  214 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999777767 888888899999998334999999888876665555543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.62  E-value=4.7e-07  Score=71.58  Aligned_cols=143  Identities=8%  Similarity=0.081  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHH--hhhhhccccc--ccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH
Q 012286            5 GVKELAMIKEYVLLVA--GFIHGSCRGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT   80 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~--~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~   80 (466)
                      +++......+|+....  ..++..+.++  -++++..--.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-.
T Consensus         2 g~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~   81 (156)
T PF05978_consen    2 GIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI   81 (156)
T ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4555556666665442  3344444443  23333333344567777788888999999999999999999999998655


Q ss_pred             HhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286           81 AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus        81 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                      ... +-++.+.++.+-++.|++.+..++..-.++.+..++++|++..+++......+.++|.++...+
T Consensus        82 ~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   82 ASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554 5677889999999999999999999999999999999999999999998888888887765443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.53  E-value=0.00015  Score=69.00  Aligned_cols=269  Identities=12%  Similarity=0.093  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccc---cccchhHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKL---NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA   81 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~   81 (466)
                      +++..|+-.++...    +..+++.+=+   +++.+..+=....+ ...+......++++|++|.+++-+....+.....
T Consensus        29 l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~  104 (491)
T PF03219_consen   29 LALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFA  104 (491)
T ss_pred             HHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            44445555444333    3344443322   44455555554444 3445577889999999999988877777766666


Q ss_pred             hhhhh---------h----------------------hHHHHHHHHHHhhhcchhhhc-chhhhhhccCCCCCchhHHHH
Q 012286           82 GCGSS---------F----------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSM  129 (466)
Q Consensus        82 ~~~~~---------~----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~  129 (466)
                      ++++.         +                      +.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..++
T Consensus       105 ~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl  184 (491)
T PF03219_consen  105 LFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPL  184 (491)
T ss_pred             HHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            65543         0                      223333333333433333333 357889999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhhhccC---------CcchhHHHHHhHHHHHHHHHH---HHhhccccccCCCCCccccccccccc
Q 012286          130 FYMCIPTGVALGYVYGGVVGS---------HLNWRYAFWGEAILMLPFAVL---AFVIKPLQLKGFAPAESGKAQVVASV  197 (466)
Q Consensus       130 ~~~~~~~G~~~g~~~~~~l~~---------~~gwr~~f~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~  197 (466)
                      +..+.++|.+++..+..++.+         ...|...........++..++   ......+....  +++..+..     
T Consensus       185 ~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~--~~~~~~~~-----  257 (491)
T PF03219_consen  185 FGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLT--DPRFYPSA-----  257 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccccchhh-----
Confidence            999999999999888877766         224654433222111111111   11122111100  00000000     


Q ss_pred             cccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Q 012286          198 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  277 (466)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (466)
                                            ..++++       ++..+..++++.++++|.+..+++...+++...+.+..-.-...+
T Consensus       258 ----------------------~~~kk~-------k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk  308 (491)
T PF03219_consen  258 ----------------------KKKKKK-------KPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLK  308 (491)
T ss_pred             ----------------------hccccc-------CCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  000000       112234567888999999999888888877776665543334444


Q ss_pred             hhccccch-hh---HHHhhhhhhccccchhhhhhHhhhccc
Q 012286          278 NIYHMSNA-DM---MFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       278 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      +.+..+.+ +.   .+....++..++..++++.+.+|+|-+
T Consensus       309 ~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  309 QLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            44433211 11   222334445555557778888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.51  E-value=2.4e-06  Score=76.78  Aligned_cols=131  Identities=11%  Similarity=0.035  Sum_probs=100.6

Q ss_pred             Hhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHH---HHhhHHH
Q 012286          269 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---CLSSLYG  344 (466)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  344 (466)
                      .--+-..+++.++.+..+. .+......+..+..+..+++.+|+++|     +-++.+..+.++.+.+.+   ...+...
T Consensus        32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk-----~gi~lgL~l~avg~~lF~pAa~~~~y~~  106 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK-----AGIVLGLLLYAVGAALFWPAASSKSYGF  106 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            3334446777888886665 555666778888999999999999999     667777777777666654   2334556


Q ss_pred             HHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc
Q 012286          345 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      +++.+++.+.+.+......+.++...-+++....-+.+.+.+... |.+++|++.+.+.+.
T Consensus       107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~l-Ga~~gp~~g~~lils  166 (422)
T COG0738         107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGL-GAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHh
Confidence            667777888888888888888888888888778888888777777 999999999998873

>PRK11462 putative transporter; Provisional

Probab=98.49  E-value=1.9e-06  Score=82.91  Aligned_cols=150  Identities=13%  Similarity=0.056  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH
Q 012286          256 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  334 (466)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      +.-+..+........|+..|+.+..|.++... .+..+.-+...+.-++.|.++||...|..++|+++..+.....+...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            33344455566667888889999999997655 33455567778889999999999776655666777766655555555


Q ss_pred             HHHHHhh------HHHHHHHHHHHHHHHHhcCccceeeeecccCC-chhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          335 TAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       335 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      +++..+.      .....+...+...+......|-.++..+..++ ++|++..+.......+ |..+++.+...+.+..
T Consensus        96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~i-G~~~~~~~~~plv~~~  173 (460)
T PRK11462         96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATA-GGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            5543331      22344444445556666666666777777664 8999999988766665 7666666654544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.48  E-value=3.1e-07  Score=90.19  Aligned_cols=129  Identities=14%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeee
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  367 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (466)
                      ...++..++..+|.++.|.++||+|||     +.+..+.++..+..+...+.++.+...+.=++.|++.+........+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            445677889999999999999999999     888888888888888888889999999999999999999988899999


Q ss_pred             ecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 012286          368 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  426 (466)
                      .|.+++++|+.+..+ ....+. ++.++|...+++..   +|+..+++.........+.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~-~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFV-GGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHH-HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 567777 55667888888877   5887777766655544444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.46  E-value=1.8e-05  Score=70.27  Aligned_cols=348  Identities=9%  Similarity=-0.048  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhc-----ccCCchhhH-hHHHHHHHHH
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-----SHNPFRLIG-VGLSVWTFAT   80 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~-~~~~~~~~~~   80 (466)
                      ..+..++|...+..+ .+|.+-+.-|+|-++.+...-++ ..+ .--+.|.++.|     |+||||.-+ -+..+.+...
T Consensus        37 l~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m  113 (510)
T KOG3574|consen   37 LFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM  113 (510)
T ss_pred             HHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence            344556677777777 88888888888877766543322 111 23578889999     999998533 2333333333


Q ss_pred             Hhhhh-----------hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc
Q 012286           81 AGCGS-----------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  149 (466)
Q Consensus        81 ~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~  149 (466)
                      .+.+.           .++...+...-++.-+..+.-..+.-.+.-.+..+++-|.+......+.+.|..++..+--.+.
T Consensus       114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~  193 (510)
T KOG3574|consen  114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALE  193 (510)
T ss_pred             HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEec
Confidence            33222           2333344444455556666666667777777888888888888888888887777765543333


Q ss_pred             C-------Ccchh---------HHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccc
Q 012286          150 S-------HLNWR---------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  213 (466)
Q Consensus       150 ~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (466)
                      +       ..+|.         ...++.+.+.++...+..+...|....  ..|+..                       
T Consensus       194 s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~--~~~e~~-----------------------  248 (510)
T KOG3574|consen  194 SPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES--VDEELE-----------------------  248 (510)
T ss_pred             ChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh--hhhhhh-----------------------
Confidence            2       01121         223334444444444444432111000  000000                       


Q ss_pred             cccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHHhhh
Q 012286          214 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVT  293 (466)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (466)
                                         ....+..+-++++++-|....+.......-.++.+.....+.-+.+ +|.+.....   +.
T Consensus       249 -------------------~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~La---l~  305 (510)
T KOG3574|consen  249 -------------------LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELA---LI  305 (510)
T ss_pred             -------------------cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHhe---ee
Confidence                               1122233456666776776666666565556666666666666655 455533331   12


Q ss_pred             hhhccccchhhhhhHhhhcccccch---hHHHHHHHHHHHHHHHHHHHHh---h---------HHHHHHHHHHHHHHHHh
Q 012286          294 IVCGIVGTISGGFILDQMGATISNA---FKLLSAATFLGAISCLTAFCLS---S---------LYGFLALFTVGELLVFA  358 (466)
Q Consensus       294 ~~~~~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~  358 (466)
                      .+..++..++.++..-|+....+..   .+.+..=.........+.+..+   .         ....+....+...+...
T Consensus       306 ~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts  385 (510)
T KOG3574|consen  306 AVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTS  385 (510)
T ss_pred             eeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHH
Confidence            2444455555555555543321110   0001011111111111111111   1         11112122334444444


Q ss_pred             cCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc
Q 012286          359 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  406 (466)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  406 (466)
                      .+...++..++..+|...|+.+.+.|+..+. |+-.-..+..++.|..
T Consensus       386 ~fv~~maf~aqisdp~iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  386 MFVSGMAFHAQISDPAIGGTYMTLLNTLSNL-GGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHHHHHHHhhcCCcccCccHHHHHHHHHHh-cCCcHHHHHHHhcccC
Confidence            5555677778888999999999999999998 5554455777777644

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.46  E-value=1.7e-05  Score=77.17  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=124.5

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHHHHHhhhhhhh-----------
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD-----------   88 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-----------   88 (466)
                      ..++..+.+++|.+...+.-..+.+.-......+.++.++|-| ||-+++.++.++..+|..+..++..           
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            3455677788888887778888888888888999999999976 9999999999999888766544321           


Q ss_pred             --------------HHHHHHHHHHhhhcchhhhcchhhhhhccCC---CC---CchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286           89 --------------FWSIAICRMLVGVGEASFISLAAPFIDDNAP---VP---QKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus        89 --------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                                    ...++.+.-+..+|.|+.-|...++-+|-++   ++   ++...+.++....+.|..++..+-.+.
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi  217 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI  217 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence                          1356777788888999999999999999998   32   234788999999999999999999898


Q ss_pred             cCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          149 GSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       149 ~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      .+..+|.+-|.+..+...+..++.+..
T Consensus       218 q~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  218 QDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             hhcccceeeccHHHHHHHHHHHHHHcC
Confidence            888999999999987766655554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.45  E-value=4e-06  Score=78.15  Aligned_cols=153  Identities=18%  Similarity=0.068  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHH
Q 012286          254 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  332 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
                      ....-+..+........|+..|+.+..|.++... .+..+.=+...+.-++.|.++||..+|..++|++++.+....++.
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~   96 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV   96 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence            3444555566677778899999999999997655 333344577788889999999999888888888888887776666


Q ss_pred             HHHHHHHh------hHHHHHHHHHHHHHHHHhcCccceeeeecccCC-chhhHHHHHHHHHHHhhcccCccchhHHhhhc
Q 012286          333 CLTAFCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       333 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      ..+.+..+      +.....+...+.+.+......|-.++..+..++ ++|.+..+.-..+... |..+...+.+.+...
T Consensus        97 ~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~-g~~l~~~~~~plv~~  175 (467)
T COG2211          97 AVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL-GGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            66665544      234455556667777777777777777776655 8999999988766666 766666666666554


Q ss_pred             ch
Q 012286          406 VN  407 (466)
Q Consensus       406 ~g  407 (466)
                      .|
T Consensus       176 ~g  177 (467)
T COG2211         176 FG  177 (467)
T ss_pred             hC
Confidence            43

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.35  E-value=1e-06  Score=83.89  Aligned_cols=135  Identities=20%  Similarity=0.170  Sum_probs=105.7

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeee
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  367 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (466)
                      ...+++.++.+++.+.++.+.||++-.     +.+..+.++.....++....++.+.+++.-++.|++.+..+|....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            445778899999999999999999955     566555555555555555577888999999999999999999999999


Q ss_pred             ecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc-----chhhHHHHHHHHHHHHHHHHHHH
Q 012286          368 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-----VNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      ..-+.+++|+..+|+.+...++ |+++|+++...+...     ..+|++.|++-+++.+...++.+
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~-g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASL-GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcch-hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            9999999999999999877776 888888777665321     12488888888776665554443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.34  E-value=5.8e-07  Score=81.69  Aligned_cols=175  Identities=7%  Similarity=-0.059  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccchhH--------HHH-HHHHHHHhhhhhhhhhhcccCCchhhHhHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGV--------LSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW   76 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~--------~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~   76 (466)
                      .+...|+........+.....+.+.+++.+.+...        ... +...++..+-.+...+.|+.|||++.+.+.+++
T Consensus       309 t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~  388 (538)
T KOG0252|consen  309 TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIM  388 (538)
T ss_pred             HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHH
Confidence            34444444334444455666677777765554433        111 122233346677788999999999999999999


Q ss_pred             HHHHHhhhhhhh-H---HHHHHHHHHhhh-cchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC-
Q 012286           77 TFATAGCGSSFD-F---WSIAICRMLVGV-GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-  150 (466)
Q Consensus        77 ~~~~~~~~~~~~-~---~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-  150 (466)
                      .+..+..+...| .   ..+++.-.+..+ +.-+-......+-+|.+|.+-|+..-|+..+..-.|.++|...-.++.+ 
T Consensus       389 ~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~  468 (538)
T KOG0252|consen  389 TIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH  468 (538)
T ss_pred             HHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence            999999988866 1   122222222222 2222334566788999999999999999999999999999999888888 


Q ss_pred             ----CcchhHHHHHhHHHHHHHHHHHHhhcccccc
Q 012286          151 ----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  181 (466)
Q Consensus       151 ----~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  181 (466)
                          ..+.|+.+++.+.++++..+..++ +||+..
T Consensus       469 ~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~  502 (538)
T KOG0252|consen  469 NYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKG  502 (538)
T ss_pred             cCCccccchHHHHHHHHHHHHhHheeEE-eecccc
Confidence                778999999999887766555444 376543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.33  E-value=0.0015  Score=60.85  Aligned_cols=268  Identities=14%  Similarity=0.074  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccccccc---ccchhHHHHHHHH-HHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKLN---NFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA   81 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s---~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~   81 (466)
                      +++..++-+++...    +-.+++.+.++   ++.+.++-+...+ +..+..++.+++.+++.|.+++-+-+..+....+
T Consensus        32 l~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~  107 (509)
T COG3202          32 LALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFA  107 (509)
T ss_pred             HHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            34455555544433    34566666554   5566777777777 6778899999999999999999988888888888


Q ss_pred             hhhhh---------------h-----------------hHHHHHHHHHHhhhcchhhhc-chhhhhhccCCCCCchhHHH
Q 012286           82 GCGSS---------------F-----------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLS  128 (466)
Q Consensus        82 ~~~~~---------------~-----------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~  128 (466)
                      ++++.               .                 +.|..-+.-++.-+-...... .-.....|.+..+|-.|..+
T Consensus       108 LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~  187 (509)
T COG3202         108 LFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYP  187 (509)
T ss_pred             HHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHH
Confidence            87764               1                 112222333333332232222 44567788888899999999


Q ss_pred             HHHhhhhhhhhhhhhhhhhccCCc-c---------hhHHHHHhHHHHHHHHHHHHhhccccccCCCCCcccccccccccc
Q 012286          129 MFYMCIPTGVALGYVYGGVVGSHL-N---------WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  198 (466)
Q Consensus       129 ~~~~~~~~G~~~g~~~~~~l~~~~-g---------wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  198 (466)
                      +++.+.+++..++..+..++.++. .         -+..+.+.+..++++..+-.+.-+...+......+.+..      
T Consensus       188 lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~k------  261 (509)
T COG3202         188 LFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKK------  261 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcc------
Confidence            999999999999998888877532 1         344444444444444333333311111110000000000      


Q ss_pred             ccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHh-hhhhhhh
Q 012286          199 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY-WGPKAGY  277 (466)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  277 (466)
                                             ++++       .......++++.+.++|.++.+.+...+++.+.+.+-. |-.. .+
T Consensus       262 -----------------------k~~~-------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~-ik  310 (509)
T COG3202         262 -----------------------KKKK-------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSG-IK  310 (509)
T ss_pred             -----------------------cccc-------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HH
Confidence                                   0000       11123445788889999999888888887777655542 3222 12


Q ss_pred             hhcccc-chhh---HHHhhhhhh-ccccchhhhhhHhhhccc
Q 012286          278 NIYHMS-NADM---MFGGVTIVC-GIVGTISGGFILDQMGAT  314 (466)
Q Consensus       278 ~~~~~~-~~~~---~~~~~~~~~-~~~~~~~~g~l~d~~~~~  314 (466)
                      ..+... +...   .+....++. .++...+++-+.+|.|-.
T Consensus       311 ~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         311 ELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence            212111 1111   112222333 344556777788887764

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.32  E-value=0.00011  Score=68.25  Aligned_cols=375  Identities=9%  Similarity=-0.048  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHhhhhhccccc--ccccccchhHHHHHHHHHHHhhhhhhhhhhc-----ccCCchhhHh-HHHHHHHH
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAK-----SHNPFRLIGV-GLSVWTFA   79 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~   79 (466)
                      ++.+++|...+...-..|.+.++  -++|-+|.|...- ....+. .-++|.++.|     |+||||.-++ .-.+.++.
T Consensus         7 ~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~   84 (544)
T PF13000_consen    7 LLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL   84 (544)
T ss_pred             HHHHHcCcccccccccchhhhccccCCCChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence            44556666655543456777776  6777777765431 111111 2344555555     8999996443 22333332


Q ss_pred             HHhhhhhh----------------------hH--HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhh
Q 012286           80 TAGCGSSF----------------------DF--WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  135 (466)
Q Consensus        80 ~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  135 (466)
                      .+..+..-                      +.  ..+...-++.=+-++.--.+.-.+.-.+..+++++.+......+.+
T Consensus        85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~  164 (544)
T PF13000_consen   85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQT  164 (544)
T ss_pred             HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhh
Confidence            22222111                      11  1122222222223333344444555556677888888888888888


Q ss_pred             hhhhhhhhhhhhccCC-------------cc---hhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccc
Q 012286          136 TGVALGYVYGGVVGSH-------------LN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  199 (466)
Q Consensus       136 ~G~~~g~~~~~~l~~~-------------~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  199 (466)
                      +|..++..+--.+.+.             .|   -..-..+.|...++..+...++.+|.+.....++.++...      
T Consensus       165 ~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~------  238 (544)
T PF13000_consen  165 AGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINK------  238 (544)
T ss_pred             hhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccc------
Confidence            8877776654333321             01   1122233344444445555555444322111111000000      


Q ss_pred             cccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh
Q 012286          200 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  279 (466)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (466)
                       .+  ...++...+..++....+++       ....++..+...+++|-|.+..+++.....-.++.+.-.-...=+.+ 
T Consensus       239 -~~--~~~~~~~~~~~~~~~~~~~~-------~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-  307 (544)
T PF13000_consen  239 -SD--GKSKEISIEYDESDVISTEE-------ILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-  307 (544)
T ss_pred             -cc--ccccccceecccccccchhh-------hhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-
Confidence             00  00000000000000000000       02233444556667788888877777666655554444433333333 


Q ss_pred             ccccchhhHHHhhhhhhccccchhhhhhHhhhcccccch---------------------------hHHHHHHH--HHHH
Q 012286          280 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA---------------------------FKLLSAAT--FLGA  330 (466)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~---------------------------~~~~~~~~--~~~~  330 (466)
                      .|++.+...   +..+..++..++.++++-|+-+.++..                           +.++.+..  ++.+
T Consensus       308 kG~~KE~LA---l~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a  384 (544)
T PF13000_consen  308 KGLSKEDLA---LLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAA  384 (544)
T ss_pred             cCCCHHHhH---HHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHH
Confidence            455544332   223445555666667666654432210                           11111110  1111


Q ss_pred             HH-HHHHHHHh-----hH--H-HHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHH
Q 012286          331 IS-CLTAFCLS-----SL--Y-GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  401 (466)
Q Consensus       331 ~~-~~~~~~~~-----~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  401 (466)
                      +. .......+     +.  . ..++.-.+..+.....+....++-++..+|..-|+.+.+.|+..|. |+---..+.=+
T Consensus       385 ~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~  463 (544)
T PF13000_consen  385 LLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLW  463 (544)
T ss_pred             HHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHH
Confidence            10 11101111     11  1 1222223344444466667778888888999999999999999999 66544444445


Q ss_pred             hhhc
Q 012286          402 LQDH  405 (466)
Q Consensus       402 l~~~  405 (466)
                      +.|.
T Consensus       464 lVD~  467 (544)
T PF13000_consen  464 LVDY  467 (544)
T ss_pred             Hhhh
Confidence            5553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.31  E-value=2e-05  Score=71.60  Aligned_cols=147  Identities=19%  Similarity=0.151  Sum_probs=123.9

Q ss_pred             ccccccccccchhHHHHHHHHHHHhhhhhhhhhhc-ccCCchhhHhHHHHHHHHHHhhhh---hhhHHHHHHHHHHhhhc
Q 012286           27 CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-SHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVG  102 (466)
Q Consensus        27 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~  102 (466)
                      =.+-||+|..|...+++.+..|..++-...|++.. |.+.|+.-.+++....++..+..+   ..+.+.+...-++.|++
T Consensus       235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g  314 (403)
T PF03209_consen  235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG  314 (403)
T ss_pred             hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            34458999999999999999999999999999888 678888888888888777766544   46788999999999999


Q ss_pred             chhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC----------CcchhHHHHHhHHHHHHHHHHH
Q 012286          103 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAVLA  172 (466)
Q Consensus       103 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr~~f~~~~~~~~~~~~~~  172 (466)
                      .|.+.....+.+.|..++++.|..+|.+.....++..+|..+++.+.|          ..+|-.+|.+.++..++...+.
T Consensus       315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887653          2357888888877665555444


Q ss_pred             H
Q 012286          173 F  173 (466)
Q Consensus       173 ~  173 (466)
                      .
T Consensus       395 ~  395 (403)
T PF03209_consen  395 G  395 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.26  E-value=4.2e-08  Score=94.64  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=85.7

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhcCccce
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELLVFATQAPVN  364 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  364 (466)
                      ...+...++..+|.++.|++.||+|||     +.+..+..+..+..++....+   +.+...+.-++.|++.+...+...
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRK-----PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHhhhccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455677899999999999999999999     677777777666666666666   777777888889999998899999


Q ss_pred             eeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          365 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       365 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      .++.|..|+++|+...++.+..... |..++..+.
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~-G~~~~~~~~  158 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWAL-GILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccc-ccccccccc
Confidence            9999999999999999988765544 777666443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.25  E-value=8.3e-06  Score=79.84  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeee
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  367 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (466)
                      .+.+...+++.++.++.|+++|++|||     +.+..+.+...+..++.....+...+.+.=++.|++.+......+.+.
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk-----~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~  167 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRK-----KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI  167 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence            666788899999999999999999999     788888888888888888788888899999999999998888888888


Q ss_pred             ecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcc-hhhHHHHHHHHHHHHHH
Q 012286          368 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLA  423 (466)
Q Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~  423 (466)
                      .|..|++.||...+..+..... |..++ .+.+...++. .+|+..+.......+..
T Consensus       168 sEiap~~~RG~l~~~~~l~~~~-Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~  222 (513)
T KOG0254|consen  168 SEIAPAHIRGTLVSLYQLFITI-GILLG-YCINYGTSKVYAGWRIPLGLALIPAVIL  222 (513)
T ss_pred             hhcCChhhhHHHHHHHHHHHHH-HHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHH
Confidence            8888889999999998777664 77766 4555555443 23775555444443333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.18  E-value=6.3e-06  Score=56.60  Aligned_cols=69  Identities=17%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHH
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW   76 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~   76 (466)
                      ...++.-.....+-+.+|...++.|+|+.++|.+.++..+...++++++|.++||+++++.++....+.
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            334444444455556666677789999999999999999999999999999999999999887766554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.15  E-value=5.6e-06  Score=77.47  Aligned_cols=109  Identities=19%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             hhhHhHHHHHHHHHHhhhhhh---------hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCC---CchhHHHHHHhhh
Q 012286           67 RLIGVGLSVWTFATAGCGSSF---------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI  134 (466)
Q Consensus        67 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  134 (466)
                      |++.++.+++.+|.++..++.         +.+.++++-.+.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888899999998855542         2367899999999999999999999999999876   4667889999999


Q ss_pred             hhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          135 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       135 ~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      ++|..+++.+.+++.++.||.+.|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998777665554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.09  E-value=2.2e-05  Score=67.57  Aligned_cols=133  Identities=12%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             HHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH-h
Q 012286          263 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-S  340 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  340 (466)
                      ...+.+..|.|. +++..|.++.+. .+.....++..+| ++.|.+.|+.+.+     ..+..+.............. .
T Consensus        16 Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~   88 (250)
T PF06813_consen   16 GTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVS   88 (250)
T ss_pred             CcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            345555666664 456788887665 5555566777664 8889999999987     65555555555554444332 1


Q ss_pred             ------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          341 ------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       341 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                            +.|......++.+.+.............+.+| ++||++.|+.-....+ ++.+-..+...+.+
T Consensus        89 ~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL-Saai~t~i~~~~f~  156 (250)
T PF06813_consen   89 GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL-SAAIFTQIYSAFFG  156 (250)
T ss_pred             CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh-HHHHHHHHHHHHcC
Confidence                  23333333333333322222222333345565 6899999999877777 44433334433333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.95  E-value=0.00066  Score=64.29  Aligned_cols=52  Identities=12%  Similarity=-0.003  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhh
Q 012286           88 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  144 (466)
Q Consensus        88 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~  144 (466)
                      .++..++.-++.|++.+........+.+ .+|++    .++.+..+.+++.+++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            5777778888999999988887777777 45644    4555566666665555443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.82  E-value=0.00018  Score=62.14  Aligned_cols=134  Identities=10%  Similarity=-0.090  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccC
Q 012286           39 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  118 (466)
Q Consensus        39 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  118 (466)
                      |.+.-+-.+...+..+.+..+.||+---+=..+..++.+.+..+.++++|.++=+.+-.+..++.|.....-.++-+. +
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence            444445556666667777778888754444556677788888999999999999999999999998776655444443 3


Q ss_pred             CCCCchhHHHHHHhhhhhhhhhhhhhhhhccC--CcchhHHHHHhHHHHHHHHHHHHhhcc
Q 012286          119 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKP  177 (466)
Q Consensus       119 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p  177 (466)
                      ++.    ..+.++.+.+.+.++|..--..+.+  ..+-|...++...+.++.....++.++
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~  200 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK  200 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence            332    3555666666666666654444544  335677777777666666666566654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.70  E-value=0.0005  Score=65.30  Aligned_cols=121  Identities=16%  Similarity=0.071  Sum_probs=80.4

Q ss_pred             hhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCC
Q 012286          294 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  373 (466)
Q Consensus       294 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (466)
                      ++...+.....|.++|++|||     ..+........+......+..  |+..+...+. .+....+....+++++....
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk-----~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~l~-g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK-----VVLLLPLFGTILPALCLLFQG--YWFFLLLGLS-GGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh-----hhHHHHHHHHHHhHHHHHHHH--HHHhhhcccc-cchhhhhhhhhhheeeccch
Confidence            566677888999999999998     444444444444333333332  3333322222 33335566678888998888


Q ss_pred             chhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286          374 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       374 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      +.|....|+.+...+. +..++|.+.+.+.+..| +...+.+..+..+...
T Consensus       144 ~~R~~~~gll~~~~~~-~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~  192 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGA-GLVIGPALGGYLVKFLG-IALVFLIAAASGILSL  192 (463)
T ss_pred             hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHH
Confidence            9999999999877777 77889999999998866 5555555555443333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.64  E-value=0.00026  Score=66.48  Aligned_cols=135  Identities=11%  Similarity=0.068  Sum_probs=73.4

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHH-HH--H-h-hHHHHHHHHHHHHHHHHhcCcc
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-FC--L-S-SLYGFLALFTVGELLVFATQAP  362 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~-~~~~~~~~~~~~~~~~~~~~~~  362 (466)
                      ...+...++..++.++.|++..|.+.-+    +-++.+.+++++..++. ..  . + ..+.+++.-++.|++.+ ....
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k----~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~  149 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVK----KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAV  149 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcc----cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHH
Confidence            4446678899999999999999988521    33334444444443333 21  1 2 33444444444444433 2233


Q ss_pred             ceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh----h--------cchhhHHHHHHHHHHHHHHHHHHH
Q 012286          363 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ----D--------HVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~----~--------~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      .-.++++...+++|.++.+..+.. ..+|.++||.+...+.    +        ....|..+-++.+.+.+...++..
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~~-~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSGG-FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhhH-HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            455666656667788888777543 3336666665433322    1        112355555665555544444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.59  E-value=0.00058  Score=67.96  Aligned_cols=159  Identities=12%  Similarity=-0.010  Sum_probs=97.1

Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhh-cccccchhHHHHHHHHHHHHHHHHHHHHh--
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAATFLGAISCLTAFCLS--  340 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  340 (466)
                      ++++...+..|+.+..+.+.... .+........-+..+++|++.|++ |++     +.+....++..+...++....  
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~   77 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIP   77 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCc
Confidence            44555666677777777775433 222233333344567889999975 555     555555555444444333221  


Q ss_pred             ------hHHHHHHHHHHHHHHHHhcCccceeeeecccCCc---hhhHHHHHHHHHHHhhcccCccchhHHhhhcch----
Q 012286          341 ------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----  407 (466)
Q Consensus       341 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g----  407 (466)
                            ........+.+...+.+..-+...+...+.++++   .+.....+.....++ |+.+++++.+++.+..+    
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccc
Confidence                  1123445556666777777788888888877653   466777777777788 88888888888875432    


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHH
Q 012286          408 --NWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       408 --~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                        +|..+|.+.+++.+++.+++..
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHH
Confidence              3666666666665555555443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.38  E-value=0.0036  Score=53.36  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=36.7

Q ss_pred             CCchhHHHHHHhhhhhhhhhhhhhhhhc---c--CCcchhHHHHHhHHHHHHHHHHHHhh
Q 012286          121 PQKTAWLSMFYMCIPTGVALGYVYGGVV---G--SHLNWRYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       121 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~--~~~gwr~~f~~~~~~~~~~~~~~~~~  175 (466)
                      |+|+....+...+.++|.++.-..--.-   .  -.-+|++.+.+.+++.++-.++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677778888888899888765432111   1  12259999999988776665555444

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.30  E-value=0.0018  Score=58.10  Aligned_cols=143  Identities=15%  Similarity=0.049  Sum_probs=80.4

Q ss_pred             hhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012286          278 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  356 (466)
Q Consensus       278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (466)
                      +.++++..+. .+.......+.+...+.|.+.||+|||     +..+..+++....++.- ..++.+..++.=++.|...
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHH
Confidence            3577776554 233344456666777889999999999     77777777777776543 3445566666666666666


Q ss_pred             HhcCccceeee-ec----ccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchh-hHHHHHHHHHHHHHHHHH
Q 012286          357 FATQAPVNYVC-LH----SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGI  426 (466)
Q Consensus       357 ~~~~~~~~~~~-~~----~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~  426 (466)
                      ...+...-+++ .|    .+|++..+...+......+.+-.+.+..+.-.+.|..+. ...+|.....+.+++.++
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            65555443333 22    244454555555443122221333344455555555441 345666655555444443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.21  E-value=0.007  Score=56.00  Aligned_cols=154  Identities=10%  Similarity=-0.060  Sum_probs=91.8

Q ss_pred             Hhhhhhhhhhh-ccccchhh--HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 012286          269 SYWGPKAGYNI-YHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  345 (466)
Q Consensus       269 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (466)
                      ..|+..|+.+. .+++..+.  -+.-...-...+..+....+.|.++.|     +.++...+...+...++.+.++...+
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-----pviil~~~~~i~t~~lll~~~sv~~m   97 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-----PVIILQALSYIITWLLLLFGTSVLAM   97 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHCcHHHH
Confidence            45666677766 77775443  111112223344566778899999988     77777777767766667777777777


Q ss_pred             HHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhc-chhhHHHHHHHHHHHHHHH
Q 012286          346 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-VNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~  424 (466)
                      -+.-++.|.....- ..-++++-..+++++--++.+......-. |..++..++..+... ..+|.....+......++.
T Consensus        98 q~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~-g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~  175 (412)
T PF01770_consen   98 QLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLV-GRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL  175 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            77777776666532 22344555556777666777776655444 666666555544442 2245555455444444444


Q ss_pred             HHHHH
Q 012286          425 GIWFV  429 (466)
Q Consensus       425 ~~~~~  429 (466)
                      +..++
T Consensus       176 ~~~~f  180 (412)
T PF01770_consen  176 LIALF  180 (412)
T ss_pred             HHHHH
Confidence            44443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.12  E-value=0.0022  Score=44.04  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccc
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  315 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~  315 (466)
                      -...++.......+..|.|.|+++ .|.++.+. .+.++..+..+++.++.|+++||.++++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            344566677777888899999997 67776665 5567778899999999999999999983

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.12  E-value=0.0039  Score=57.43  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             hhhhhccccchhhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHH
Q 012286          275 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-----SLYGFLALF  349 (466)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  349 (466)
                      +.++.++.+....++..++.+.+++-.+.+.|+.||+|-|     .....+..+.++...+=....     +.... -+.
T Consensus        70 ~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR-----~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~  143 (480)
T KOG2563|consen   70 YVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR-----TALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLT  143 (480)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchH-----HHHHHHHHHHHHHHHHhhhccCccccccchh-hhh
Confidence            5555566333344666778889999999999999999998     555555555555444322221     11111 122


Q ss_pred             HHHHHHHHhcCcccee----eeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          350 TVGELLVFATQAPVNY----VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       350 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      .......+...+-...    ....-+++++|+++..+..+...+ |.+++..+-+.+.
T Consensus       144 ~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~L-Gvavg~llppilV  200 (480)
T KOG2563|consen  144 HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPL-GVAVGFLLPPILV  200 (480)
T ss_pred             HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchH-HHHHHhhccceec
Confidence            2222222333332222    223347889999999888655444 5555444444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.12  E-value=0.0023  Score=61.02  Aligned_cols=149  Identities=14%  Similarity=0.022  Sum_probs=86.3

Q ss_pred             hhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh----hHHHHHH
Q 012286          273 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGFLA  347 (466)
Q Consensus       273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  347 (466)
                      ..++++.++.++.+. .+..+..+.- ...++.|.++|-+.-+..+++..++.+..++..........+    +.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            346788888987665 3333333333 336788999998752222222555555555544333333222    3334444


Q ss_pred             HHHHHHHHHHhcCccceeeeecccCC--chhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286          348 LFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      ++++..++........-..+.|....  +.+|.-.+........ |++++..+.|.+.+..+ ++..|.+...+..+..
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~-G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSV-GSLVGSLLSGPLLDSFG-PQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHH-HHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHH
Confidence            44555555555555555555555422  3377878887666666 88888889999998865 5556665554444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.07  E-value=0.033  Score=51.20  Aligned_cols=57  Identities=18%  Similarity=0.020  Sum_probs=36.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          339 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                      ..+.++.+....+.++..|-.....+....+.++++++..+-.+.. +.-..|-..|.
T Consensus       340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~-~fl~~Gl~~G~  396 (406)
T KOG1479|consen  340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMV-FFLVGGLALGS  396 (406)
T ss_pred             ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHH-HHHHHHHHHhh
Confidence            3466777777777777777666666777788888877666555553 33332544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.87  E-value=0.00015  Score=70.66  Aligned_cols=67  Identities=7%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             HHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHH
Q 012286          263 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  334 (466)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  334 (466)
                      ...+++..-.-.-+++.++++..+. .+.+..-++.++..++..++.+|..|.     +++..+.++.++..+
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-----rwig~g~~~~~~g~~   83 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-----RWIGIGALLMGLGSL   83 (539)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----ceeeecHHHHHHHHH
Confidence            3333333333335677788886555 555677788888888888888775444     555444444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.82  E-value=0.17  Score=47.80  Aligned_cols=65  Identities=14%  Similarity=-0.017  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchh-hHHHhhhhhhccccchhhhhhHhhhcccc
Q 012286          251 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATI  315 (466)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  315 (466)
                      .+.+.+..++..+..-...+-.|.++.+.+..+-.. ..+...-.+..++.....|.+.||..|.+
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~   69 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLK   69 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchh
Confidence            445566666666666666677778887775444211 12333445566667777888999987764

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.72  E-value=0.015  Score=46.19  Aligned_cols=100  Identities=7%  Similarity=-0.066  Sum_probs=72.9

Q ss_pred             hhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecc
Q 012286          291 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  370 (466)
Q Consensus       291 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (466)
                      ++......++.++.+.+.+++|.|     +.++.+.+...+.... ...++.+..+....+.|++.+..+......+.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            455566677788899999999998     6666666665544433 3455667777788888888888888877777777


Q ss_pred             cCCchhhHHHHHHHHHHHhhcccCccc
Q 012286          371 VKPSLRALSMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       371 ~~~~~~~~~~g~~~~~~~~~g~~~~~~  397 (466)
                      ..++.+++-.++.....+. +.++|..
T Consensus       118 s~~~~~~~~~~ifw~i~~~-s~i~G~~  143 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQS-SLIFGNL  143 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHH-HHHHHHH
Confidence            7778899888888766665 5555543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=96.62  E-value=0.025  Score=55.17  Aligned_cols=161  Identities=12%  Similarity=-0.033  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcc-cccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHH--H-HHHHHh
Q 012286            7 KELAMIKEYVLLVAGFIHGSC-RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV--W-TFATAG   82 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~-~~~~~~   82 (466)
                      .+..|+.|+....+=.+...+ .--+|-+....+.+.+++..|.++|+.+++++.++--|+. ..+-..+  . .++..+
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence            344555555555544443333 3346778888899999999999999999998864322222 2111111  1 111111


Q ss_pred             hhhhh----hH-HHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcchhH
Q 012286           83 CGSSF----DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRY  156 (466)
Q Consensus        83 ~~~~~----~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~  156 (466)
                      .....    .+ ..++..-++.|+..|...|....+..+... ++-++..|-.+....+|.++|.++.+++. +.+|-..
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~  177 (521)
T PRK03612         99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIR  177 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHH
Confidence            11111    11 223344566778888888877777665432 23567788889999999999998877644 4566444


Q ss_pred             HHHHhHHHHHHHH
Q 012286          157 AFWGEAILMLPFA  169 (466)
Q Consensus       157 ~f~~~~~~~~~~~  169 (466)
                      ..++.+.+.++..
T Consensus       178 t~~~~a~l~~~~a  190 (521)
T PRK03612        178 TAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.52  E-value=0.032  Score=51.77  Aligned_cols=142  Identities=11%  Similarity=0.020  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhhhHhhhhhhhhhhccccch-hhHHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHH
Q 012286          257 GYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  335 (466)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
                      ..+...+.+..-..|+|.|++.. |.+.. ........-+.+.+..++.|..+||...|..++|+.+........+.+.+
T Consensus        40 ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~L  118 (498)
T KOG0637|consen   40 IAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFL  118 (498)
T ss_pred             HHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhh
Confidence            33444455555567888888874 34322 12222334466677788899999987666555557776665555555444


Q ss_pred             HHHHhh-----------------HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhH-HHHHHHHHHHhhcccCccc
Q 012286          336 AFCLSS-----------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL-SMAISTVSIHIFGDVPSSP  397 (466)
Q Consensus       336 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~  397 (466)
                      ..+...                 ....++...+.-+.......|.-++..+...++++.+ +++....+..+ |+.+|-.
T Consensus       119 ig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av-GnvLGY~  197 (498)
T KOG0637|consen  119 IGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV-GNVLGYA  197 (498)
T ss_pred             hhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh-cceeeee
Confidence            433211                 1122222333334445677788888888887766666 88887666665 7777664


Q ss_pred             hhH
Q 012286          398 LVG  400 (466)
Q Consensus       398 ~~g  400 (466)
                      +.+
T Consensus       198 ~g~  200 (498)
T KOG0637|consen  198 LGS  200 (498)
T ss_pred             ccc
Confidence            444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.086  Score=49.87  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccc-cccccchhHHHHHHHHHHH----hhhhhhhhhh---cccCCchhhHhHHHHHHH
Q 012286            7 KELAMIKEYVLLVAGFIHGSCRGDF-KLNNFQDGVLSSAFMVGLL----VASPIFASLA---KSHNPFRLIGVGLSVWTF   78 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~~~~~----~~~~~~g~l~---dr~Grr~~l~~~~~~~~~   78 (466)
                      ....+..|....-..-..|.-..-. ... ...-.+.+++.++..    ++..+.+.++   +|+||++.+.++..+..+
T Consensus       246 ~~~f~~tG~~~Sf~~~iypt~i~ft~~~~-~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~  324 (461)
T KOG3098|consen  246 FPFFFYTGLETSFWISIYPTCISFTRKLG-SNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLI  324 (461)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhhhcc-CcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHH
Confidence            3344455555554444444322211 111 122233444444444    4445555555   568999999999999888


Q ss_pred             HHHhhhhh------------------hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhh
Q 012286           79 ATAGCGSS------------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  140 (466)
Q Consensus        79 ~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  140 (466)
                      +.++.-..                  +++...++.-++.|++-+......+.++++.+ +++|..+.++...-..++..+
T Consensus       325 ~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  325 GFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            88876543                  24667788889999999999999999999999 556899999988888887777


Q ss_pred             hhhhhhh
Q 012286          141 GYVYGGV  147 (466)
Q Consensus       141 g~~~~~~  147 (466)
                      +-.....
T Consensus       404 ~~f~~~~  410 (461)
T KOG3098|consen  404 AFFFSPY  410 (461)
T ss_pred             Hhhhhhh
Confidence            6554443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.35  E-value=0.022  Score=51.18  Aligned_cols=122  Identities=13%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             HHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh------hh------hhHHHHHHHHHHhh----hcchhhhcc
Q 012286           46 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------SS------FDFWSIAICRMLVG----VGEASFISL  109 (466)
Q Consensus        46 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G----~~~~~~~~~  109 (466)
                      .....+..++.|...|+..|+|++...+.+.-++.+.++      +.      .++..+..+-++.-    ++.=.....
T Consensus        73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~  152 (503)
T KOG2601|consen   73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG  152 (503)
T ss_pred             HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334456677788889999999998887776555544433      21      23444433333322    222222222


Q ss_pred             hhhhhhccC----CCCCchhHH---HHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHH
Q 012286          110 AAPFIDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  167 (466)
Q Consensus       110 ~~~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  167 (466)
                      ...+-.||.    ..+.+....   +..-..-..-..+.|.+.|.+.+..+-|..-...++.+++
T Consensus       153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            223334443    333344333   4444444556678899989888887777765555555555

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.22  E-value=0.037  Score=51.26  Aligned_cols=116  Identities=9%  Similarity=0.043  Sum_probs=83.7

Q ss_pred             ccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHH---hhhhhhhHHHHHHHHHHhhhcchhhh
Q 012286           31 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA---GCGSSFDFWSIAICRMLVGVGEASFI  107 (466)
Q Consensus        31 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~  107 (466)
                      +.-..++..+...+|.+|-.++.--...+  |+-+-+++.+-..+..+..+   ..-+.+|.|..++.-+..|+..|..+
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence            33345677888888888877764433222  44333333222222222222   23345889999999999999999999


Q ss_pred             cchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286          108 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus       108 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                      .-....+.|-.|+++|..+++..+.+-++|..++.+++-.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.14  E-value=0.00099  Score=60.36  Aligned_cols=56  Identities=18%  Similarity=0.065  Sum_probs=2.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCcc
Q 012286          340 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  396 (466)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  396 (466)
                      ++.+..++...+.++..|-.....+....+.+++++|..+-.+....... |-.+|.
T Consensus       246 ~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~-Gl~~Gs  301 (309)
T PF01733_consen  246 NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF-GLFIGS  301 (309)
T ss_dssp             ---------------------HHHH--------------------------------
T ss_pred             cchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            35566666677777777766666667777888887787776666444444 655555

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.79  E-value=0.25  Score=47.34  Aligned_cols=53  Identities=8%  Similarity=-0.091  Sum_probs=35.2

Q ss_pred             HHHHHHHHhcCc-cceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh
Q 012286          350 TVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       350 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  403 (466)
                      ...........+ .....+.|...+++..+-.++.....++ |.++++.+..++.
T Consensus       136 v~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganl-g~i~sg~~~~~~~  189 (472)
T TIGR00769       136 VMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANV-ALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            333333333443 2334555666668889999999887777 8888887777766

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.50  E-value=0.061  Score=53.52  Aligned_cols=62  Identities=6%  Similarity=0.013  Sum_probs=35.7

Q ss_pred             hhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          267 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      +...-.-.-+++.++++.... .+....-++..+......+...|..|.     +++..+.++.++..
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-----r~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-----RWIGIGLVLMGLGS  176 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-----ceeeechhHHHHHH
Confidence            333333445677788775443 444556677777777777777776665     44444444443333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.39  E-value=0.3  Score=43.81  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcCcccee
Q 012286          288 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNY  365 (466)
Q Consensus       288 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  365 (466)
                      .......+...++.++.|.+.||.|||     +....................  ..+.........+...+...+....
T Consensus        43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  117 (338)
T COG0477          43 LLLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASA  117 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344455666666679999999999887     344333322222222222222  2344444444455666666666677


Q ss_pred             eeecccCC-chhhHHHHHHHHHHHhhcccCccchhHHhhhc
Q 012286          366 VCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  405 (466)
Q Consensus       366 ~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  405 (466)
                      ...+..|+ +.|+...+.........|..++|.+.+.+.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776 67888888876633333777777666666654

>PRK03612 spermidine synthase; Provisional

Probab=94.34  E-value=0.74  Score=45.09  Aligned_cols=57  Identities=9%  Similarity=-0.064  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhh-cch
Q 012286          349 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-HVN  407 (466)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~~g  407 (466)
                      .++.++..|...|...-+..+.. .+..+...|-......+ |+++|+++.+.+.- ..|
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntl-Ga~~G~l~~~~vLlp~lG  174 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYL-GALVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhH-HHHHHHHHHHHHHHHhcc
Confidence            34455666666554444333321 22234445555444444 88888877777654 455

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.01  E-value=2  Score=37.31  Aligned_cols=137  Identities=14%  Similarity=0.029  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhcccCCc--hhhHhHHHHHHHHHHhhhhh----h---hHHHHHHHHHHhhhcchhhhc
Q 012286           38 DGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGSS----F---DFWSIAICRMLVGVGEASFIS  108 (466)
Q Consensus        38 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~~~  108 (466)
                      -|.+.+.+++...+|+-+..++..|-..|  ..+.+..++..+...+....    +   +...=+++..+.-...|.++|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48999999999999999998888775544  34444444444443332222    1   111123344445566778999


Q ss_pred             chhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHh
Q 012286          109 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  174 (466)
Q Consensus       109 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  174 (466)
                      ....+=+++.|++.|...+.++..-.++=..++-..-..-....+-|..|-++.....+..+....
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~  429 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRR  429 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999998876655433222111000011235678888888776666554433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.49  E-value=0.31  Score=33.99  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=49.9

Q ss_pred             hhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 012286          265 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  343 (466)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (466)
                      -+.+...+|...++ .+++..+. .+.+...++..+|.+...++.++.+++     +.+..+.+............++.+
T Consensus         8 RFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    8 RFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             HHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhchH
Confidence            34445566755555 67776554 677888899999999999888875554     666666666666666665555544


Q ss_pred             H
Q 012286          344 G  344 (466)
Q Consensus       344 ~  344 (466)
                      .
T Consensus        82 ~   82 (85)
T PF06779_consen   82 L   82 (85)
T ss_pred             H
Confidence            3

Note that many members are hypothetical proteins.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.11  E-value=1.5  Score=40.74  Aligned_cols=35  Identities=9%  Similarity=-0.049  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhcCccceeeeecccCCchhhH
Q 012286          343 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  378 (466)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
                      +..++...+.+.+.+...+..+... ..+|+|....
T Consensus       118 ~vt~~~vv~~~~a~a~~qgs~~G~a-~~~P~~ytqa  152 (406)
T KOG1479|consen  118 LVTLIIVVLLNLANAVVQGSLYGLA-GLFPSEYTQA  152 (406)
T ss_pred             HHHHHHHHHHhhhhhhhccchhhhh-hcCCHHHHHH
Confidence            3444445555555555555555553 4467765543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.99  E-value=0.38  Score=45.61  Aligned_cols=39  Identities=21%  Similarity=0.108  Sum_probs=21.4

Q ss_pred             ceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHh
Q 012286          363 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  402 (466)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  402 (466)
                      .-........++.++-|..-.....+. |..++-.++=.+
T Consensus       139 VDGWALT~Ls~~n~~~ASTcqtvG~~~-Gyfls~tvFlal  177 (544)
T PF13000_consen  139 VDGWALTMLSPENVGYASTCQTVGQTA-GYFLSFTVFLAL  177 (544)
T ss_pred             eehhhhhhcChhhcchHHHHHHhHhhh-hHHHHHHHHHhh
Confidence            344555566777777766554433333 666655444333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.83  E-value=2.9  Score=40.50  Aligned_cols=57  Identities=11%  Similarity=0.064  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhcCccceeeeecc-cCCchhhHHHHHHHHHHHhhcccCccchhHHhhh
Q 012286          347 ALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  404 (466)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  404 (466)
                      ...+..-.......+.+.+-.+++ ...++..+-.++.....++ |.+++..+...+.+
T Consensus       148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~gani-gli~sG~~~~~~~~  205 (491)
T PF03219_consen  148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANI-GLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            333333333334334344444444 4458889999999887777 77766666666655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.75  E-value=0.11  Score=48.71  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHhcCccceeeeecccCCc---hhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHH
Q 012286          343 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  419 (466)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  419 (466)
                      ....+.+.+..++.+..-+....+..+.++++   .|.+.........++ |..+++.+.+++.++.| |...|.+..+.
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~-G~~~~~~~~~~i~~~~~-~~~~f~i~~~~  111 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI-GSLFSPTLVPYIQQNYG-WFLGFGIPAIG  111 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHCS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh-hhHhhcccchhhccccc-hhhhhhHHHHH
Confidence            45666667778888888888888888888764   566777777788888 88888889999998887 88888887777


Q ss_pred             HHHHHHHHHHH
Q 012286          420 FFLAAGIWFVG  430 (466)
Q Consensus       420 ~~~~~~~~~~~  430 (466)
                      .+++.+.+...
T Consensus       112 ~~~~~~~f~~~  122 (372)
T PF00854_consen  112 MLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhC
Confidence            77666655543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=86.98  E-value=4.4  Score=37.29  Aligned_cols=63  Identities=13%  Similarity=0.014  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHh-----hhcccc
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD-----QMGATI  315 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~  315 (466)
                      +.+..+...+..+....+- ..-.|.+++. .+.+..+. .++...+--+  --++...++|     |+|||+
T Consensus        31 ~~illLl~LYllQGiP~GL-~~~iP~lL~a-k~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~Grrk   99 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGL-IGAIPLLLQA-KGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRK   99 (510)
T ss_pred             hhHHHHHHHHHHcCCchhH-hhhhHHHhcC-CCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhcccc
Confidence            4455555555555554443 4478888873 45553332 2222211111  1345666677     999986

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.73  E-value=7.6  Score=37.20  Aligned_cols=107  Identities=12%  Similarity=0.016  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCCc-hhhHhHHH---HHHHHHHhhhh---------hhhHHHHHHHHHHhhhcchh
Q 012286           39 GVLSSAFMVGLLVASPIFASLAKSHNPF-RLIGVGLS---VWTFATAGCGS---------SFDFWSIAICRMLVGVGEAS  105 (466)
Q Consensus        39 g~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~l~~~~~---~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~  105 (466)
                      -....+|.++-.+|..+..+.. .-++| +.+.+..+   ++.-..++|..         -++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3455677888888777554331 11223 12322222   22222233322         24667777889999999999


Q ss_pred             hhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhh
Q 012286          106 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  146 (466)
Q Consensus       106 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~  146 (466)
                      ....+..+..+..+++||..+..+...+..+|..+|..++-
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987753

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=84.65  E-value=4.7  Score=36.62  Aligned_cols=132  Identities=14%  Similarity=0.038  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccCCch--hhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhc
Q 012286           39 GVLSSAFMVGLLVASPIFASLAKSHNPFR--LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD  116 (466)
Q Consensus        39 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  116 (466)
                      |..-++..+..+++.+..|.+.-++.|..  .+..+.+..+...++++.+++.|..+++-++.+.-.....+++..-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            66677888889999999999988887764  4445555566666667778899999988888888777888888899999


Q ss_pred             cCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-----------hhHHHHHhHHHHHHHHHHHH
Q 012286          117 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-----------WRYAFWGEAILMLPFAVLAF  173 (466)
Q Consensus       117 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-----------wr~~f~~~~~~~~~~~~~~~  173 (466)
                      ..+.+.-|..+|+......   ++=.++.-.+.|.-|           +-.-|.+.+++.++.....+
T Consensus       354 nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~  418 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY  418 (433)
T ss_pred             hhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence            9988888888887765433   333334434444211           33456666666555544433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=83.65  E-value=3.1  Score=37.02  Aligned_cols=120  Identities=9%  Similarity=0.043  Sum_probs=80.6

Q ss_pred             ccccccc-cchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhh
Q 012286           29 GDFKLNN-FQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  106 (466)
Q Consensus        29 ~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  106 (466)
                      +.+.++. .|+-|....|.+|..+..--....--+ .---.++-.-.+++.+...+..+.+++|..++.-+..|+-.|..
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas  359 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS  359 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence            4444443 468888888887765443221111111 00001222333445555566678899999999999999877778


Q ss_pred             hcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhc
Q 012286          107 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  148 (466)
Q Consensus       107 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  148 (466)
                      +.-..--+.+-.++++|-.+++....+-.+|..++..++-.+
T Consensus       360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            877777777778888999999999999999999888776444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 53/408 (12%), Positives = 115/408 (28%), Gaps = 39/408 (9%)

Query: 30  DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG----S 85
           +   +    G   S   +    +  I  S++   NP   +  GL +        G    +
Sbjct: 56  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115

Query: 86  SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VY 144
           +     + +   L G  +          +       ++   +S++      G  +   ++
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175

Query: 145 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--KPLQLKGFAPAESGKAQVVASVSEGSE 202
              +    +W  A +  A   +  A+ AF +     Q  G  P E  K       +E +E
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 235

Query: 203 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN 262
                                          +L+      + +L  K+     +  +   
Sbjct: 236 Q------------------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVY 265

Query: 263 FVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-VCGIVGTISGGFILDQMGATISNAFKL 321
            +      W P     + H +     +        GI GT+  G++ D++      A  +
Sbjct: 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325

Query: 322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA 381
                   A          +    +    V   L++     +    L          +  
Sbjct: 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385

Query: 382 ISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 429
            + +  ++ G V +S +VG   D    W    + +     LA  +  V
Sbjct: 386 FTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 37/290 (12%), Positives = 75/290 (25%), Gaps = 101/290 (34%)

Query: 19  VAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLL--VASPIFASL---AKSHNPFR--LIGV 71
           V  F+  +      L++     L+   +  LL          L     + NP R  +I  
Sbjct: 277 VTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 72  GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS------------FISLAAPFIDDNAP 119
            +           +++D W    C  L  + E+S            F  L+  F   +A 
Sbjct: 336 SIRDGL-------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F-PPSAH 386

Query: 120 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 179
           +P          + +                        W +    +  + +  V+  L 
Sbjct: 387 IPTIL-------LSL-----------------------IWFD----VIKSDVMVVVNKLH 412

Query: 180 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSI--KSIGESRFLNQLSQ 237
                  +  K              ++   +  ++  +        +SI +    N    
Sbjct: 413 KYSLV-EKQPK----------ESTISIPS-IYLELKVKLENEYALHRSIVDHY--NIPKT 458

Query: 238 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM 287
           F  D  +             Y         YS+ G       +H+ N + 
Sbjct: 459 FDSDDLIPPYLD-------QYF--------YSHIG-------HHLKNIEH 486

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.53
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.46
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.42
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
2xut_A	524	Proton/peptide symporter family protein; transport	99.3
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.27
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.18

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=5.5e-41  Score=321.95  Aligned_cols=390  Identities=13%  Similarity=0.068  Sum_probs=303.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+.+..+.++++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  110 (451)
T 1pw4_A           32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG  110 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            345566777888888889999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             h----hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHH
Q 012286           85 S----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFW  159 (466)
Q Consensus        85 ~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~  159 (466)
                      +    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..| ||+.|+
T Consensus       111 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          111 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            9    99999999999999999999999999999999999999999999999999999999999999888888 999999


Q ss_pred             HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286          160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  239 (466)
Q Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (466)
                      +.++++++..++.++..||+++..+.+++++...          .   ++  ++.+    .+++++.       ..+  .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~--~~~~----~~~~~~~-------~~~--~  242 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------D---YP--DDYN----EKAEQEL-------TAK--Q  242 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C-----------------------------CCT--H
T ss_pred             HHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------c---cc--ccch----hhhhccc-------ccc--c
Confidence            9999888888777777777544322111110000          0   00  0000    0000000       000  0


Q ss_pred             hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhh--ccccc
Q 012286          240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATIS  316 (466)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~  316 (466)
                      ...++.+++|.++...+..++..........+.|.|+++.++.++... .......++.+++.++.+++.||+  ++|  
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--  320 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--  320 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--
Confidence            114577889999999998888888888999999999999888886554 555677888999999999999999  777  


Q ss_pred             chhHHHHHHHHHHH-HHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhccc
Q 012286          317 NAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  393 (466)
Q Consensus       317 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~  393 (466)
                         +.+.....+.. +..++....  .+.+......++.+++.+...+.......+.+|+++|+++.|+.+...+.+|..
T Consensus       321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~  397 (451)
T 1pw4_A          321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  397 (451)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence               55544444433 333333332  245555666666777666666666788889999999999999998776664778


Q ss_pred             CccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          394 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       394 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      ++|.+.|.+.|..| +...+++.+++.+++.++...
T Consensus       398 ~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          398 AASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999887 777777777666665554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=7.4e-40  Score=312.89  Aligned_cols=359  Identities=17%  Similarity=0.202  Sum_probs=289.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh-
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC-   83 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~-   83 (466)
                      .+.+..+..+++....++..|.+.+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++ 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  109 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW  109 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3556677889998999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             --hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcc-------
Q 012286           84 --GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLN-------  153 (466)
Q Consensus        84 --~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~g-------  153 (466)
                        ++++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+. +..+       
T Consensus       110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  189 (438)
T 3o7q_A          110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL  189 (438)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred             hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence              888999999999999999999999999999999999999999999999999999999999999988 6554       


Q ss_pred             ------------------hhHHHHHhHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccCCCCcccccc
Q 012286          154 ------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  214 (466)
Q Consensus       154 ------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (466)
                                        ||+.|++.+++.++..++.++.. ||.+++.+++++                          
T Consensus       190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------------------------  243 (438)
T 3o7q_A          190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK--------------------------  243 (438)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS--------------------------
T ss_pred             ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc--------------------------
Confidence                              99999988877766665544432 332111000000                          


Q ss_pred             ccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhh-hhhhccccchhh-HHHhh
Q 012286          215 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGV  292 (466)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~  292 (466)
                                          .++..+++++++++|.++...+..++..........+.|.| +++.++.++... .....
T Consensus       244 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  303 (438)
T 3o7q_A          244 --------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG  303 (438)
T ss_dssp             --------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             --------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence                                00112356788899999999988888888888888999999 888878886554 55566


Q ss_pred             hhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccC
Q 012286          293 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK  372 (466)
Q Consensus       293 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (466)
                      ..++.+++.++.+++.||++||     +.+..+..+..+..++....++.+. .....+.+++.+...+.......+.+|
T Consensus       304 ~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  377 (438)
T 3o7q_A          304 TMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG  377 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG
T ss_pred             HHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            7788899999999999999998     6666666666665555555544443 334466667777777777777788888


Q ss_pred             CchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHH
Q 012286          373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  418 (466)
Q Consensus       373 ~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  418 (466)
                      ++ ++++.++.. .... |..++|.+.|.+.|..|++...+.+...
T Consensus       378 ~~-~~~~~~~~~-~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          378 QD-TKYGSSFIV-MTII-GGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             GG-HHHHHHHHH-HTTH-HHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             cc-ccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            66 888888875 4444 8889999999999988756666665433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.5e-39  Score=315.33  Aligned_cols=420  Identities=14%  Similarity=0.089  Sum_probs=270.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccc--------cccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHH
Q 012286            6 VKELAMIKEYVLLVAGFIHGSCRGDFKL--------NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT   77 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~   77 (466)
                      .++-.+++|||...++..+|.+.++++.        ++.+.|++.+++.+|..++++++|+++||+|||+++.++.+++.
T Consensus        17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~   96 (491)
T 4gc0_A           17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF   96 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4556789999999999999998887743        34567899999999999999999999999999999999999999


Q ss_pred             HHHHhhh------------------hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhh
Q 012286           78 FATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  139 (466)
Q Consensus        78 ~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  139 (466)
                      +++++++                  +++|+++++++|+++|++.|...+..+.+++|+.|+++|++..++.+.+..+|.+
T Consensus        97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A           97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence            9999988                  4789999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccC--------CcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccc
Q 012286          140 LGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS  211 (466)
Q Consensus       140 ~g~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (466)
                      +++.++..+..        ..+||..+.+..+..++..+. .+..||+++....+++.+...+..  ++....+.   .+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l--~~~~~~~~---~~  250 (491)
T 4gc0_A          177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGIL--RKIMGNTL---AT  250 (491)
T ss_dssp             HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHH--HHHHHHHH---HH
T ss_pred             hhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhH--HHhcCCch---hH
Confidence            99988766543        235888888887766655444 344587765432221111110000  00000000   00


Q ss_pred             cccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH-HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHH
Q 012286          212 EDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV-NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG  290 (466)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (466)
                      ++..+..+..           ...+.. ......++.+.... .....+......+....|.|.+.+.....+.......
T Consensus       251 ~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (491)
T 4gc0_A          251 QAVQEIKHSL-----------DHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT  318 (491)
T ss_dssp             HHHHHHHHHH-----------HHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHHH-----------Hhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence            0000000000           000000 01112233333333 3333344444556666777777666444333333445


Q ss_pred             hhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHHHHHHhcCccc-ee
Q 012286          291 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---L-SSLYGFLALFTVGELLVFATQAPV-NY  365 (466)
Q Consensus       291 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-~~  365 (466)
                      .+..+..+++.++++++.||+|||     +.+........+..+....   . ...+..+....+...+.+....+. +.
T Consensus       319 ~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4gc0_A          319 IIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV  393 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            566788889999999999999999     5554444443333322211   1 122333333333334444444443 45


Q ss_pred             eeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch-----hhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc
Q 012286          366 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKF  439 (466)
Q Consensus       366 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  439 (466)
                      +..|.+|++.|+++.|+.+...++ ++++++.+.+.+.+...     +....+++.+++.+++.++.  ..+.|| |+++
T Consensus       394 ~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~--~~~~PETkg~t  470 (491)
T 4gc0_A          394 LLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM--WKFVPETKGKT  470 (491)
T ss_dssp             HHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHCCCCTTCC
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HheecCCCCCC
Confidence            667888889999999999888887 77778888877765321     12234455444443333322  234565 8899


Q ss_pred             cccccccccccc
Q 012286          440 NEDGENQISLDS  451 (466)
Q Consensus       440 ~~~~~~~~~~~~  451 (466)
                      .||.++..+++.
T Consensus       471 Leei~~~f~~~~  482 (491)
T 4gc0_A          471 LEELEALWEPET  482 (491)
T ss_dssp             HHHHGGGTC---
T ss_pred             HHHHHHHhCCCC
Confidence            988887665443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=3.8e-38  Score=294.59  Aligned_cols=354  Identities=14%  Similarity=0.056  Sum_probs=282.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      .+.+..+..+++...+.+..|.+.+++|.|+++.+++.+.+.++..++++++|+++||+|||+++..+.++..++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   83 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV   83 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286           85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  164 (466)
Q Consensus        85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~  164 (466)
                      +++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||+.|++.+++
T Consensus        84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  163 (375)
T 2gfp_A           84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL  163 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999887


Q ss_pred             HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHh
Q 012286          165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  244 (466)
Q Consensus       165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (466)
                      .++..+..++..||+++..+++  ++                                               ..+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------------------------------~~~~~~~  194 (375)
T 2gfp_A          164 CAGVTFSMARWMPETRPVDAPR--TR-----------------------------------------------LLTSYKT  194 (375)
T ss_dssp             HHHHHCCCCCSSCCCSTTTCCC--CC-----------------------------------------------TTTCSTH
T ss_pred             HHHHHHHHHHHCcccCCCCccc--cc-----------------------------------------------HHHHHHH
Confidence            7766654444555533221000  00                                               0123456


Q ss_pred             hhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286          245 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  323 (466)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  323 (466)
                      .+++|.++...+..++..........+.|.|+++..+.++... .......++.+++.++.+++.||.+++     ....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~  269 (375)
T 2gfp_A          195 LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQS  269 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHH
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence            7788999988888888888888899999999998888775544 444566777788888888888887763     2222


Q ss_pred             HHH-HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhH
Q 012286          324 AAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  400 (466)
Q Consensus       324 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g  400 (466)
                      ... ............  .++.+...+...+.+++.+...+.......+..| ++|+++.|+.+...+. |..++|.+.|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g  347 (375)
T 2gfp_A          270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSA  347 (375)
T ss_dssp             HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCT
T ss_pred             HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHH
Confidence            211 111111111111  2345555566677778888888888888888887 8999999999887777 8899999999


Q ss_pred             HhhhcchhhHHHHHH
Q 012286          401 VLQDHVNNWRKTTLA  415 (466)
Q Consensus       401 ~l~~~~g~~~~~~~~  415 (466)
                      .+.+..+ +...+..
T Consensus       348 ~l~~~~~-~~~~~~~  361 (375)
T 2gfp_A          348 MLPQTGQ-GSLGLLM  361 (375)
T ss_dssp             HHHHHHH-HHHHHHH
T ss_pred             HHhcCCc-ccHHHHH
Confidence            9987544 6555544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=6.3e-35  Score=282.87  Aligned_cols=415  Identities=9%  Similarity=-0.039  Sum_probs=268.4

Q ss_pred             HHHHHHHHHHHHHH-hhhhhccccc-----ccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHH
Q 012286            7 KELAMIKEYVLLVA-GFIHGSCRGD-----FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFA   79 (466)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~   79 (466)
                      ....+...+..... ....+.+.++     +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~   98 (491)
T 4aps_A           19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG   98 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            33445555554444 3333444444     99999999999999999999999999999999 89999999999999999


Q ss_pred             HHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCC--chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHH
Q 012286           80 TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA  157 (466)
Q Consensus        80 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~  157 (466)
                      .+++++++|++.++++|+++|++.+...+...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A           99 HIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            9999999999999999999999999999999999999999998  77788889999999999999999999998999999


Q ss_pred             HHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccc----------------cCCCCccccccccchhhh
Q 012286          158 FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA----------------SNLNDHVSEDISDQASER  221 (466)
Q Consensus       158 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~  221 (466)
                      |++.++..++..++.++..|+..++..++++.+.. .++..+..+.                .....+.++.........
T Consensus       179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (491)
T 4aps_A          179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVA  257 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHH
Confidence            99998877766666555544433221111110000 0000000000                000000000000000000


Q ss_pred             ccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccc-hhhHHHhhhhhhcccc
Q 012286          222 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVG  300 (466)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  300 (466)
                      .....  .......++......+..+....+...+...+..........+.|.|.++..+.+. ..........+..+++
T Consensus       258 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (491)
T 4aps_A          258 IAIPV--FYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY  335 (491)
T ss_dssp             HHHHH--HHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred             HHHHH--HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence            00000  00000000000000111122233444445555556666667788888888777663 2334445667777888


Q ss_pred             chhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHhcCccceeeeeccc
Q 012286          301 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---------SSLYGFLALFTVGELLVFATQAPVNYVCLHSV  371 (466)
Q Consensus       301 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (466)
                      .++.+++.||++||+......+..+..+..+........         .+.+.......+.+++.+...+.......+..
T Consensus       336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  415 (491)
T 4aps_A          336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA  415 (491)
T ss_dssp             HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            899999999999985433233334444444433333222         14455666667777777777888888889999


Q ss_pred             CCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 012286          372 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  427 (466)
Q Consensus       372 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  427 (466)
                      |++.|+++.|+.+...+. |..++|.+.+.+.+..  +...+...+.+.+++.++.
T Consensus       416 p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          416 PKAFNSQMMSMWFLSSSV-GSALNAQLVTLYNAKS--EVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             TTTCSSSSTHHHHHHHHH-HHHHHHHHGGGGGGSS--TTHHHHHTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence            999999999999877777 8899999998888753  4455655555544444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=4e-32  Score=256.89  Aligned_cols=361  Identities=11%  Similarity=0.008  Sum_probs=232.7

Q ss_pred             HHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH---HhhhhhhhHH-
Q 012286           16 VLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-   90 (466)
Q Consensus        16 ~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-   90 (466)
                      ......+.+|. +++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.   ....+++... 
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33343444554 667899999999999999999999999999999999999999999888776532   2223333221 


Q ss_pred             HHHHHHHHhhhcchhhhcchhhhhhccCCC--CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286           91 SIAICRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~  168 (466)
                      .+...+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++.
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~  180 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL  180 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence            245677787777776665555666665543  346777888888999999999999998876 48999999887765443


Q ss_pred             HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286          169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  248 (466)
Q Consensus       169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (466)
                      .+.. +..|+++++.  .++++               . ++  +        ++++.            ..+++++++++
T Consensus       181 ~~~~-~~~~~~~~~~--~~~~~---------------~-~~--~--------~~~~~------------~~~~~~~~~~~  219 (417)
T 2cfq_A          181 AVLL-FFAKTDAPSS--ATVAN---------------A-VG--A--------NHSAF------------SLKLALELFRQ  219 (417)
T ss_dssp             HHHS-CSSCCCCSCS--SCSSS---------------S-SS--S--------CCCCC------------CHHHHHHHTTC
T ss_pred             HHHH-HHcCcccccc--ccccc---------------c-cc--c--------ccccc------------cHHHHHHHhcC
Confidence            3332 2223211100  00000               0 00  0        00000            01234567788


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc---chhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  324 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  324 (466)
                      |.++...+..+.....+..+..+.|.|+.+.++..   .... ....+..++.+++.++.+++.||++||     +.+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~  294 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLL  294 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHH
Confidence            88877666655555555555567888877655422   1122 333455567788899999999999988     66655


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH-HHHHHhhcccCccchhHHhh
Q 012286          325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQ  403 (466)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~g~l~  403 (466)
                      +..+..+..+.....++.+...+...+.++......+....+..|..|++.|+++.+.. +...+. |.+++|.+.|.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~  373 (417)
T 2cfq_A          295 AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHH
Confidence            55554444333333344444444444444444444444556778888889999999984 555556 8888999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHH
Q 012286          404 DHVNNWRKTTLALTSIFFLAAG  425 (466)
Q Consensus       404 ~~~g~~~~~~~~~~~~~~~~~~  425 (466)
                      |..| +...|.+.+++.+++.+
T Consensus       374 ~~~g-~~~~f~~~~~~~l~~~~  394 (417)
T 2cfq_A          374 ESIG-FQGAYLVLGLVALGFTL  394 (417)
T ss_dssp             HHSH-HHHHHHHHHHHHHHHHH
T ss_pred             HhcC-cHHHHHHHHHHHHHHHH
Confidence            9776 66677666655444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=4.1e-30  Score=251.08  Aligned_cols=169  Identities=12%  Similarity=0.081  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHhh-hhhccccccc------ccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHH
Q 012286            7 KELAMIKEYVLLVAGF-IHGSCRGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTF   78 (466)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~   78 (466)
                      .+..++..+....... ..+.+.+++|      .++.+.+++.+.+.++..++++++|+++||+ |||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            4445555555544443 4445678899      9999999999999999999999999999999 999999999999999


Q ss_pred             HHHhhhhhh-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHH---HHhhhhhhhhhhhhhhhhccCCcch
Q 012286           79 ATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNW  154 (466)
Q Consensus        79 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gw  154 (466)
                      +.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+..||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A           98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999999 999999999999999999999999999999999999876666   9999999999999999999988899


Q ss_pred             hHHHHHhHHHHHHHHHHHHhh
Q 012286          155 RYAFWGEAILMLPFAVLAFVI  175 (466)
Q Consensus       155 r~~f~~~~~~~~~~~~~~~~~  175 (466)
                      |+.|++.+++.++..+..++.
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999988776655554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.53  E-value=2.7e-14  Score=136.24  Aligned_cols=169  Identities=9%  Similarity=-0.077  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHhhhhhccccc-ccccccchhHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHhHHHHHH-HHHHhh
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGC   83 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~   83 (466)
                      +..++.......+....|.+.++ +|.++.+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            33444444444455555655555 899999999999999999999999999999999  99999988887776 677776


Q ss_pred             hhh--hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhh-hhhhhhhhhhhccCCcchhHHHHH
Q 012286           84 GSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWG  160 (466)
Q Consensus        84 ~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~~  160 (466)
                      .+.  ++.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            666  47788888889999998888888899999999999999999999999999 999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhc
Q 012286          161 EAILMLPFAVLAFVIK  176 (466)
Q Consensus       161 ~~~~~~~~~~~~~~~~  176 (466)
                      .+++.++..++.++..
T Consensus       419 ~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          419 MIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988887776666553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.46  E-value=1.2e-13  Score=130.32  Aligned_cols=146  Identities=8%  Similarity=0.006  Sum_probs=125.7

Q ss_pred             ccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhh
Q 012286           33 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP  112 (466)
Q Consensus        33 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  112 (466)
                      .+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556688888888899999999999999999999999999988888888888888888888888888887777777889


Q ss_pred             hhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286          113 FIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus       113 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      ++.|.+|++.|+++.++ ++....+|..++|.+++.+.+..|++..|.+.++++++..++.++..||
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999 5888889999999999999988899999999988877777665555454

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.42  E-value=8.3e-13  Score=127.45  Aligned_cols=173  Identities=11%  Similarity=0.049  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh-----ccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchhHH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  321 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  321 (466)
                      +.++...+..++....++....+++.|+++.     ++.+..+. ...+...++..++.++.|+++|| +|||     +.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~   87 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA   87 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence            4566667777777788888888999999988     88886655 55677888999999999999999 8998     77


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch--hhHHHHHHHHHHHhhcccCccchh
Q 012286          322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      +..+..+..+..++....++.+...+..++.+++.+...+....++.+.+|+++  |+.+.++.+...+. |..++|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~  166 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence            777777777777666667777777788888888888888888899999999887  77888888777777 889999999


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          400 GVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       400 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +.+.+..| |+..+++.+...+++.++..
T Consensus       167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          167 GAAQEAAG-YHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            99998876 88888876655554444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=4.1e-12  Score=120.66  Aligned_cols=150  Identities=9%  Similarity=0.041  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHH
Q 012286          252 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  330 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  330 (466)
                      ....+..+.............|.+ ++.++.+..+. ...+...++..++.++.|++.||+|||     +.+..+..+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~  102 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHH
Confidence            333444455555555566667764 45577776655 556778889999999999999999999     77777766666


Q ss_pred             HHHHHH---HHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh-hcc
Q 012286          331 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHV  406 (466)
Q Consensus       331 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~-~~~  406 (466)
                      +..++.   ...++.+...+..++.+++.+...+....++.+..|+++|+++.++.+..... |.+++|.+.+.+. +..
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence            666555   55667788888888899998888888899999999999999999999877777 9999999999988 554


Q ss_pred             hh
Q 012286          407 NN  408 (466)
Q Consensus       407 g~  408 (466)
                      +.
T Consensus       182 ~~  183 (438)
T 3o7q_A          182 PH  183 (438)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.30  E-value=8.7e-12  Score=121.31  Aligned_cols=169  Identities=12%  Similarity=0.014  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcc------ccchhh-HHHhhhhhhccccchhhhhhHhhh-cccccchhH
Q 012286          249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFK  320 (466)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~  320 (466)
                      +.++...+..++.....+....++|.|+++..+      .++.+. ...+...++..++.++.|+++||+ |||     +
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----~   86 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----N   86 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----H
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----H
Confidence            455666677777777788888899999988888      776554 555777888899999999999999 998     7


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHH---HHHHHHhhcccCcc
Q 012286          321 LLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPSS  396 (466)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~~  396 (466)
                      .+..+..+..+..++....+ +.+...+..++.+++.+...+....++.+.+|+++|+++.+.   .+...+. |..++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g~  165 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFAS  165 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence            77666666666666666666 777777777888888888888888999999999999876666   7666666 888999


Q ss_pred             chhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286          397 PLVGVLQDHVNNWRKTTLALTSIFFLAA  424 (466)
Q Consensus       397 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~  424 (466)
                      .+.+.+.+..| |+..+.+.+...++..
T Consensus       166 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~  192 (524)
T 2xut_A          166 LSMPLLLKNFG-AAVAFGIPGVLMFVAT  192 (524)
T ss_dssp             HTSTHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence            99999988766 8777776665544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.27  E-value=2.1e-11  Score=117.60  Aligned_cols=160  Identities=8%  Similarity=-0.019  Sum_probs=120.8

Q ss_pred             hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh-----hHHHHHH-
Q 012286           21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAI-   94 (466)
Q Consensus        21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-   94 (466)
                      ....|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+...     +...+.. 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  376 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM  376 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            3445667777777777777777788888999999999999999999999999888888777665431     2222222 


Q ss_pred             HHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC------CcchhHHHHHhHHHHHHH
Q 012286           95 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPF  168 (466)
Q Consensus        95 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~  168 (466)
                      .-+..+.+. ...|....+.+|.+|.+.|++++++......+|..+++.+...+.+      ..++...|++.++++++.
T Consensus       377 ~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~  455 (491)
T 4gc0_A          377 LFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  455 (491)
T ss_dssp             HHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            222222232 2446678899999999999999999999999999988877665543      235667889999999999


Q ss_pred             HHHHHhhcccccc
Q 012286          169 AVLAFVIKPLQLK  181 (466)
Q Consensus       169 ~~~~~~~~p~~~~  181 (466)
                      .+..++++||++.
T Consensus       456 ~i~~~~~~PETkg  468 (491)
T 4gc0_A          456 ALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHCCCCTT
T ss_pred             HHHHHheecCCCC
Confidence            9888889998753

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.18  E-value=1.2e-11  Score=114.72  Aligned_cols=159  Identities=14%  Similarity=0.067  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286          255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  333 (466)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  333 (466)
                      .+..++............|.+.+ .++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence            34445555555556666676554 467776554 555777888999999999999999998     55656666666666


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286          334 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  413 (466)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  413 (466)
                      ......++.+...+...+.+++.+...+.......|..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~  157 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY  157 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence            66666677777777788888888888888888889999999999999999877777 88999999999988765 77777


Q ss_pred             HHHHHHHH
Q 012286          414 LALTSIFF  421 (466)
Q Consensus       414 ~~~~~~~~  421 (466)
                      .+.+...+
T Consensus       158 ~~~~~~~~  165 (375)
T 2gfp_A          158 LFLLVLCA  165 (375)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 12/155 (7%), Positives = 41/155 (26%), Gaps = 1/155 (0%)

Query: 22  FIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 81
               S     +      G +++   +           +         + +  ++ +    
Sbjct: 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304

Query: 82  GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVAL 140
           G   +     + I + L        +     +I     V        + +       +  
Sbjct: 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364

Query: 141 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 175
             V  G +   + ++ A+    ++ L F +++   
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.51
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-40  Score=314.14  Aligned_cols=390  Identities=13%  Similarity=0.047  Sum_probs=287.6

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh
Q 012286            8 ELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF   87 (466)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~   87 (466)
                      +..+...+|...++.+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~  110 (447)
T d1pw4a_          32 FGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP  110 (447)
T ss_dssp             HHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccc
Confidence            334555666677888888876 5899999999999999999999999999999999999999999999999999988764


Q ss_pred             ----hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCC-cchhHHHHHhH
Q 012286           88 ----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEA  162 (466)
Q Consensus        88 ----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~  162 (466)
                          +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.+
T Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~  190 (447)
T d1pw4a_         111 WATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA  190 (447)
T ss_dssp             HHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhh
Confidence                6788999999999999999999999999999999999999999999999999999988876654 47999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhH
Q 012286          163 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT  242 (466)
Q Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (466)
                      ++.++..++.+++.++.++....++.++...               +..++..+..+   ++          ........
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~---~~----------~~~~~~~~  242 (447)
T d1pw4a_         191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKN---------------DYPDDYNEKAE---QE----------LTAKQIFM  242 (447)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC---------------C--------------------------CCTHHHH
T ss_pred             hhHHHHHHHHHHhcccchhhcccchhhhhhh---------------hcccchhhccc---cc----------cchhhHHH
Confidence            9988888887777665443322111111000               00000000000   00          00011235


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHH
Q 012286          243 KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  321 (466)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  321 (466)
                      +..++++.++......++.....+....+.|.|+++.++.+.... ....+..+..+++.++.|++.||++++....  .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~  320 (447)
T d1pw4a_         243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA--T  320 (447)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH--H
T ss_pred             HHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc--c
Confidence            567888999998888888888888999999999999888886554 5556777888999999999999999874221  1


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchh
Q 012286          322 LSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  399 (466)
Q Consensus       322 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  399 (466)
                      ......+.........  ...+.+...+..++.+++.+...+.......+.+|++.||++.|+.+...+..|.+++|.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         321 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111111  12345555556666666666666666777888899999999999998877775667789999


Q ss_pred             HHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286          400 GVLQDHVNNWRKTTLALTSIFFLAAGIWFV  429 (466)
Q Consensus       400 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  429 (466)
                      |.+.|..| +...+.+...+.+++.++...
T Consensus       401 g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         401 GYTVDFFG-WDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            99999987 666676666655555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.3e-30  Score=238.92  Aligned_cols=375  Identities=12%  Similarity=-0.005  Sum_probs=252.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286            6 VKELAMIKEYVLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG   84 (466)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~   84 (466)
                      +++..+...+......+.+|. +++++|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+..
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            445566667777777777775 6778999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhHHHH----HHHHHHhhhcchhhhcchhhhhhccCCC--CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHH
Q 012286           85 SSFDFWSI----AICRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  158 (466)
Q Consensus        85 ~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f  158 (466)
                      +..+....    ++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+. +|+..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  170 (417)
T d1pv7a_          92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVF  170 (417)
T ss_dssp             HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccc
Confidence            87665543    4566666666555555554444444433  2455677788888889999999999888765 566666


Q ss_pred             HHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhh
Q 012286          159 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  238 (466)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (466)
                      ........+..++.++..|+.+...+++++++...                              ++           ..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~-----------~~  209 (417)
T d1pv7a_         171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANH------------------------------SA-----------FS  209 (417)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC------------------------------CC-----------CC
T ss_pred             cchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc------------------------------cc-----------cc
Confidence            66666666666666666555433322111111000                              00           00


Q ss_pred             hhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh---ccccchh-hHHHhhhhhhccccchhhhhhHhhhccc
Q 012286          239 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI---YHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGAT  314 (466)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~  314 (466)
                      ....++..+++..+....................+.+....   .+.+... ........++..++..+.+++.||.+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  289 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK  289 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc
Confidence            01122223333333333332222222222222222222211   1222222 2334556677788899999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccC
Q 012286          315 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  394 (466)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  394 (466)
                           +.+..+..+..+..+.....++.+...+...+.+++.+...+.......+.+|++.|+++.|+.....+.+|..+
T Consensus       290 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  364 (417)
T d1pv7a_         290 -----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred             -----cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence                 777777777777777777777888888888888888888888888899999999999999998644444348888


Q ss_pred             ccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286          395 SSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  428 (466)
Q Consensus       395 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  428 (466)
                      +|.+.|++.|..| +...+++.+++.++..++..
T Consensus       365 ~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         365 MSVLAGNMYESIG-FQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987 77777776666555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.2e-14  Score=134.40  Aligned_cols=156  Identities=8%  Similarity=-0.022  Sum_probs=140.6

Q ss_pred             hhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc
Q 012286           23 IHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  102 (466)
Q Consensus        23 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  102 (466)
                      ..+...++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  325 (417)
T d1pv7a_         246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE  325 (417)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence            34445566677777888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcchhhhhhccCCCCCchhHHHHH-HhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286          103 EASFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  178 (466)
Q Consensus       103 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  178 (466)
                      .+...+...+++.|.+|+++|++..++. +....+|..++|.++|++.+..||+..|++.+++.++..++.++.+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999985 566779999999999999999999999999999988888877777643

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.2e-13  Score=124.29  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=112.0

Q ss_pred             hhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH----hh
Q 012286          267 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SS  341 (466)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  341 (466)
                      .+....| ++++ .|.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++....    .+
T Consensus        43 ~~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (447)
T d1pw4a_          43 NFALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSS  115 (447)
T ss_dssp             SHHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred             HHHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHhhccccchhhhh
Confidence            3444455 4444 57776665 556778899999999999999999999     77766666655554443332    34


Q ss_pred             HHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHH
Q 012286          342 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  421 (466)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  421 (466)
                      .+...+.-++.+++.+...+.....+.+.+|+++|+++.|+.+..... |..++|.+.+.+.+..++|+..++....+.+
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  194 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLGMAWFNDWHAALYMPAFCAI  194 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch-hhhhhhhhhhhHhhhhhcccccchhhhhhHH
Confidence            556667777788888888888888999999999999999999877777 8899998888887776667777766665544


Q ss_pred             HHHHHH
Q 012286          422 LAAGIW  427 (466)
Q Consensus       422 ~~~~~~  427 (466)
                      +..++.
T Consensus       195 ~~~~~~  200 (447)
T d1pw4a_         195 LVALFA  200 (447)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433