Citrus Sinensis ID: 012294

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEccEEEEEcHHHHHccccccccccccccccEEEccccccHHHHHHHHcccccccccccccHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccEEEEccccEEEccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEcccEEEEEccccccccccccEEEcccccccEEEEEEccccccccEEEEEEcccccccccccEEccccccccccccccEEEEccccEEEEEccccccccccEEEEEEEcccccEEEEEcccccEEccEEEEcccccEEEEEEccccEEEEEEccccccccEEEccccccccccccccccccEEEEEccEEEEEccccEEEEEEEEEccccccccccccccEEEEcccccccccccccEEEEEEEccEEEEEEEcccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEcccEEEEccHHHHHHccccHHHHHHHccccEEEcccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccHHHHccccccccccccEEEEcccccEEEEcccEEEEEcHHHcccccEEcccccccccEEccccEEEEEccccccEEEEEccccEEEEEEEEccccccccHHHHHccccccEEEEEccccccccEEEEEEcccccEEEEEccHHccccccHccccccHEEEcccccEEEEEEEccccccccEEEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEcccccEEEEEHHHccccccEEEEcccccccccccccccccEEEEEccEEEEEccccEEEEEEEEEcccccccccccccccEEEccccccccccccEEEEEEEcccEEEEEEccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mpsiatsmppsksksksksidsnivtidVGGQIFQTTKQTlalagpkslLSKLADsthrfidrdPELFSILLSLLRtgnlpskakaFDIEDLIEESKFYNIESLLinsqsnpsqfdaFSLEKslilplngrdspsaiattnygtlhvshgskitsfdwsmrkkstILTHFTAVDSLlalspgvaaagatdfsglqvldlengyvketlnwenvtrssstvqaigssdkhlfvsfesgrrnsnsimvydinslkpvneigqneiygtdiesaipatklRWVSSYNLLLAsgshsdiskvtgnikfwdirsgnvawevkdevdcfsdvtvsDNLSAIYKVGINSGEVSYMDLrklgdssewiclgdgrkmvngkrkegfgckiechanqvfcgkggeieLWSEIVMGsrksreggpleERVFRKNLMGrvtdmggskitnlsfggnkmfvtrkGQQTVEVWQSSSRGF
Flexible Loop (DISEMBL)
mpsiatsmppsksksksksidsNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETlnwenvtrssstvqaigssdkHLFVSFesgrrnsnSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLAsgshsdiskVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDssewiclgdgrkMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMgsrksreggpleeRVFRKNLMGRVTDMGGSKITNLSFGGNKMFVtrkgqqtvevwqsssrgf
Low Complexity Region (SEG)
MPSIATSMPPsksksksksIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF
Disordered region (IsUnstruct)
**********************NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLIN*******FDAFSLEKSLILPLNG****SAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS***VQAIG***KHLFVSFES***NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMG**************FRKNLMGRVTDMGGSKITNLSFGGNKMFVTR****************
Disordered Region (DISOPRED)
**************************IDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLI*********************************************************STILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESG*RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI*******************KIECHANQVFCGKGGEIELWSEIV****************F**NLM*****MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS****
Disordered Region (DISEMBL)
*******************IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKG**************
Disordered Region (DISPRO)
*********************SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN**R*EGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
Q9FN67	458	BTB/POZ domain-containing	yes	no	0.952	0.969	0.649	1e-168
Q9S7R7	460	BTB/POZ domain-containing	no	no	0.901	0.913	0.322	2e-57
O65555	441	BTB/POZ domain-containing	no	no	0.858	0.907	0.262	3e-19
Q9ZUH1	441	BTB/POZ domain-containing	no	no	0.866	0.916	0.248	5e-16
Q14681	263	BTB/POZ domain-containing	yes	no	0.169	0.300	0.408	7e-07
Q6P3P4	255	BTB/POZ domain-containing	yes	no	0.208	0.380	0.344	1e-06
Q9NXV2	234	BTB/POZ domain-containing	no	no	0.175	0.350	0.410	1e-06
Q8VC57	234	BTB/POZ domain-containing	no	no	0.175	0.350	0.410	1e-06
A5PKG7	234	BTB/POZ domain-containing	no	no	0.175	0.350	0.410	2e-06
Q8K0E1	283	BTB/POZ domain-containing	no	no	0.167	0.275	0.365	2e-06

>sp|Q9FN67|Y5133_ARATH BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1

 Score =  593 bits (1528), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/448 (64%), Positives = 362/448 (80%), Gaps = 4/448 (0%)

Query: 21  DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNL 80
           +SN+V+I+VGG+IFQTTKQTL+LAG  SLLS+LA  T RF+DRDP+LFS+LL +LRTGNL
Sbjct: 9   ESNVVSINVGGRIFQTTKQTLSLAGTDSLLSQLATETTRFVDRDPDLFSVLLYILRTGNL 68

Query: 81  PSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATT 140
           P++++AFD+ DLI+ES++Y IES LI+S SN SQF+ F L +S IL LNGRDSPS+I+ T
Sbjct: 69  PARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLRRSRILQLNGRDSPSSISPT 128

Query: 141 NYGT-LHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDL 199
             G  LHV+HGSKITSFDWS+R+KST+LT+F+AVDSLL +SPGV AAGATDF GLQ++DL
Sbjct: 129 VIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLEISPGVLAAGATDFPGLQIIDL 188

Query: 200 ENG-YVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI 258
           +NG +V+ TLNWENVTRSSSTVQAIGSS + LF SFES RRNSNSIMVYD++SL PV+EI
Sbjct: 189 DNGGFVRTTLNWENVTRSSSTVQAIGSSHEFLFTSFESSRRNSNSIMVYDLSSLLPVSEI 248

Query: 259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318
              EIYG DI+SAIP+TKL+W+ S NLL+ SGSH+  S V G+I+FWD+RS N+ WE+K+
Sbjct: 249 DHCEIYGADIDSAIPSTKLKWIQSCNLLMVSGSHTSPSGVNGHIRFWDVRSRNMVWEIKE 308

Query: 319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378
             DCFSDVTVSDNLSA++KVG+ SGEV Y DLR LG    W+CLG+ +K  N   + G G
Sbjct: 309 AQDCFSDVTVSDNLSAVFKVGVTSGEVFYADLRSLGTKDPWVCLGEEKKR-NLNERRGVG 367

Query: 379 CKIECHANQVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKIT 437
            KIE + N VFC  KG  IELWSE++ G   +     LEERVFRKN +G++ D G +KIT
Sbjct: 368 SKIESYGNHVFCSSKGSGIELWSEVITGLVGNASRDVLEERVFRKNSLGKLADSGENKIT 427

Query: 438 NLSFGGNKMFVTRKGQQTVEVWQSSSRG 465
            L+FGGN+MFVTRK QQ+V+VWQS SRG
Sbjct: 428 GLAFGGNRMFVTRKDQQSVQVWQSPSRG 455

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7R7|Y3903_ARATH BTB/POZ domain-containing protein At3g09030 OS=Arabidopsis thaliana GN=At3g09030 PE=2 SV=1

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 42/462 (9%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-----FIDRDPELFSILLSLLRTGN 79
           V ++VGG+IF+T   T+  + P SLL+ L+ ST       FIDRDPE+F+++L+LLRTG 
Sbjct: 10  VKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSHGSNPVFIDRDPEIFAVILNLLRTGR 69

Query: 80  LPSKAKA-FDIEDLIEESKFYNIESLLINSQSNPS--QFDAFSLEKSLILPLNGRDSPSA 136
           LP+ +   F  ++L++E+ +Y +ESLL  +   P    FDA SL  +++   +G   PSA
Sbjct: 70  LPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDA-SLVSTIVPAADG--VPSA 126

Query: 137 I-ATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQ 195
           + AT    +L ++HG +I+ +DWS+    T+ TH   + S+  +    AA G+   SGL 
Sbjct: 127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWGEAAAIGSGSASGLH 186

Query: 196 VLDLENGYVKETLNW---ENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSL 252
             DL  G    + +W   E+     + V A+  S+  +F SF+   R  NS++  D ++L
Sbjct: 187 FYDLSGGRYIGSTHWTDPEDPRIHKARVAAVADSEGGVFASFDCLHRE-NSVLQIDKSTL 245

Query: 253 KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV 312
           +    IGQ    G   ++ +P  KLRW+ +  LL+ S     +   +G I+ WD RS N+
Sbjct: 246 QVAAVIGQQS--GNSAKTTVP-EKLRWLPAKGLLVGSAVQRGVFGCSGYIRIWDPRSRNI 302

Query: 313 AWEVKDE--------VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGD 364
            WE  +          D  +D+ V    S ++KV   SG++   D+RKLG+   W+ + D
Sbjct: 303 VWETNEPGSGRSTRFGDALADMDVDVEDSILFKVCSKSGDLGMADIRKLGE-DPWVYMSD 361

Query: 365 GRKMVNGKRKEGFG---CKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFR 421
                 G  K G G     + C+  QV   +GG +E+WS +    ++   G P+     R
Sbjct: 362 ENP---GAWKAGDGGGYSVVHCYRKQVLAARGGALEVWSSV----KEKTSGDPIR----R 410

Query: 422 KNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463
           +N + +  D     I+ +  GG+++FV+R+  + VEVW++SS
Sbjct: 411 RNFVDKEDDSKRGMISKIEAGGDRLFVSRECMEGVEVWETSS 452

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O65555|Y4094_ARATH BTB/POZ domain-containing protein At4g30940 OS=Arabidopsis thaliana GN=At4g30940 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 194/465 (41%), Gaps = 65/465 (13%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-------FIDRDPELFSILLSLLRT 77
           +  +VGG+IF+TT  TLA AG  S    L D           FIDR+P+ F++LL LLRT
Sbjct: 8   IKFNVGGRIFETTATTLANAGRDSFFGALFDENWNLSQPGDLFIDRNPDCFAVLLDLLRT 67

Query: 78  GNL---PSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSL--ILPLNGRD 132
           G+L   P+  +      L +E+ FY +   L  ++  P   +   L +S+  I P +G  
Sbjct: 68  GDLNIPPNIPERL----LHKEAMFYGLIDHLRTAKWGPFDGNRLHLSRSVTGIAPGDG-- 121

Query: 133 SPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDF- 191
             +AI     G   ++HGS +  FDW + +  TI   +  V+ +  +  G     A +  
Sbjct: 122 --TAIRAGPDGGCCIAHGSVVHVFDWMLEEHPTINLDYQRVNDVGWIDSGNIVLSACERL 179

Query: 192 ----SGLQVLDLENGYV--KETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIM 245
                G+ +    +G +  K  ++ +N  +S S      S D  +F S + GR N   I 
Sbjct: 180 GRGDGGMGLFSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTSCK-GRSNEYGIG 238

Query: 246 VYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW 305
           V+D ++ K V     +  Y +   S   A KL+W+S  N LL +       K    I   
Sbjct: 239 VWDQSTGKQV-----DFFYESPGWSLGDADKLQWLSGKNCLLVATLFP--RKDNCYISLL 291

Query: 306 DIRSGNVAWEVKD-------EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSE 358
           D R  N+ W   D       E     D    +  ++I  V     ++ ++DLR  G  S 
Sbjct: 292 DFREKNMVWSWSDIGFLTMAEEKRVRDAIAMEESNSICVVN-EFEDLGFIDLRMDGGGSS 350

Query: 359 WICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELW--SEIVMGSRKSREGGPLE 416
                  R M +    E    K+  H  Q+F      I ++  S+ V+ SR  R      
Sbjct: 351 VRWSSRSRLMKSKMPDEPCYPKLALHEGQLFSSMNDSISVFCGSDWVLTSRLKRS----- 405

Query: 417 ERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS 461
                          GGS I + S GG+++F     +   +VW++
Sbjct: 406 --------------YGGS-ICDFSIGGDRLFALHSEENVFDVWET 435

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUH1|Y2424_ARATH BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 190/471 (40%), Gaps = 67/471 (14%)

Query: 20  IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR---------FIDRDPELFSI 70
           I  + +  +VGG++F+TT  TLA AG  S    L D             F+DR+ + F++
Sbjct: 3   ISKDRIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSILFVDRNSDCFAV 62

Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSL--ILPL 128
           LL LLRTG+L   A   +   L  E+ FY +   +  ++  P   +   L  S+  I P 
Sbjct: 63  LLDLLRTGDLNVPANIPE-RLLHREASFYGLLDHVRTAKWGPFDGNRLRLSDSVKGIAPG 121

Query: 129 NGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSL-------LALSP 181
           +G    +AI     G   V+HGS +  FDW + + S I   +  V+ +       + LS 
Sbjct: 122 DG----TAIRAGPDGGCCVAHGSVVHVFDWMLEEHSPINLDYQRVNDVGWIDSDNIVLS- 176

Query: 182 GVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRSSSTVQAIGSSDKHLFVSFESGRR 239
                G  D  G+ +    +G ++       EN  +S +      S D  +F S + GR 
Sbjct: 177 ACEKLGRGD-GGMGLFSSSSGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCK-GRS 234

Query: 240 NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT 299
           N   I V+D  + K       +  Y +   S   A KL+W++  N LL +       K  
Sbjct: 235 NEYGIGVWDQITGKQT-----DFFYESPGWSLGDADKLQWLNGKNCLLVATLFP--RKDN 287

Query: 300 GNIKFWDIRSGNVAWEVKD-------EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352
             I   D R  N+ W   D       +     D    ++ ++I  V     ++ ++DLR 
Sbjct: 288 CYISLLDFRDKNMVWSWSDIGSPMAIDEKRVRDAIAMEDSNSICVVN-EFEDLGFIDLRM 346

Query: 353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWS--EIVMGSRKSR 410
            G S  W      + M +    E    K+  H  Q+F      I ++   + V+ SR  R
Sbjct: 347 YGGSVRWS--SRSKLMKSKMPDEPCYPKLALHEGQLFSSMNDSISVFCGPDWVLTSRLRR 404

Query: 411 EGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS 461
                                GGS I + S GG+++F     +   +VW++
Sbjct: 405 S-------------------YGGS-ICDFSIGGDRLFALHSEENVFDVWET 435

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q14681|KCTD2_HUMAN BTB/POZ domain-containing protein KCTD2 OS=Homo sapiens GN=KCTD2 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 14/93 (15%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLA-----------DSTHRF-IDRDPELFSILL 72
           V ++VGG  F TT+QTL    PKS L +L            D T  + IDRDP  F  +L
Sbjct: 74  VRLNVGGTYFVTTRQTLGRE-PKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPIL 132

Query: 73  SLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           + LR G L    K    E ++EE++FYNI SL+
Sbjct: 133 NYLRHGKL-IITKELAEEGVLEEAEFYNIASLV 164

Homo sapiens (taxid: 9606)

>sp|Q6P3P4|KCD15_XENTR BTB/POZ domain-containing protein kctd15 OS=Xenopus tropicalis GN=kctd15 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 19/116 (16%)

Query: 2   PSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADST---- 57
           P  A  +P     +KS +     V IDVGG ++ ++  TL    P S +S+L + T    
Sbjct: 13  PLAAQGIPLPAQLTKSNAP----VHIDVGGHMYTSSLATLT-KYPDSRISRLFNGTEPIV 67

Query: 58  ------HRFIDRDPELFSILLSLLRTGN--LPSKAKAFDIEDLIEESKFYNIESLL 105
                 H FIDRD E+F  +LS LRT    LP   K F++  L EE+K+Y +  ++
Sbjct: 68  LDSLKQHYFIDRDGEIFRYILSFLRTSKLLLPEDFKEFNL--LYEEAKYYQLHPMV 121

Xenopus tropicalis (taxid: 8364)

>sp|Q9NXV2|KCTD5_HUMAN BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens GN=KCTD5 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  
Sbjct: 43  SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 101

Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 102 VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 135

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Homo sapiens (taxid: 9606)

>sp|Q8VC57|KCTD5_MOUSE BTB/POZ domain-containing protein KCTD5 OS=Mus musculus GN=Kctd5 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  
Sbjct: 43  SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 101

Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 102 VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 135

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Mus musculus (taxid: 10090)

>sp|A5PKG7|KCTD5_BOVIN BTB/POZ domain-containing protein KCTD5 OS=Bos taurus GN=KCTD5 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  
Sbjct: 43  SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 101

Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 102 VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 135

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Bos taurus (taxid: 9913)

>sp|Q8K0E1|KCD15_MOUSE BTB/POZ domain-containing protein KCTD15 OS=Mus musculus GN=Kctd15 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 15/93 (16%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLADST----------HRFIDRDPELFSILLSL 74
           V IDVGG ++ ++  TL    P S +S+L + T          H FIDRD E+F  +LS 
Sbjct: 58  VHIDVGGHMYTSSLATLT-KYPDSRISRLFNGTEPIVLDSLKQHYFIDRDGEIFRYILSF 116

Query: 75  LRTGN--LPSKAKAFDIEDLIEESKFYNIESLL 105
           LRT    LP   K F++  L EE+++Y ++ ++
Sbjct: 117 LRTSKLLLPDDFKDFNL--LYEEARYYQLQPMV 147

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
359474193	464	PREDICTED: BTB/POZ domain-containing pro	0.952	0.956	0.754	0.0
255537509	474	potassium channel tetramerization domain	0.995	0.978	0.710	0.0
224074953	469	predicted protein [Populus trichocarpa]	0.957	0.950	0.724	0.0
449452300	476	PREDICTED: BTB/POZ domain-containing pro	0.954	0.934	0.698	0.0
224053885	477	predicted protein [Populus trichocarpa]	0.950	0.928	0.709	0.0
356513375	458	PREDICTED: BTB/POZ domain-containing pro	0.972	0.989	0.685	1e-180
147225285	463	hypothetical protein [Nicotiana tabacum]	0.980	0.987	0.671	1e-180
449495768	476	PREDICTED: LOW QUALITY PROTEIN: BTB/POZ	0.954	0.934	0.696	1e-180
356528515	461	PREDICTED: BTB/POZ domain-containing pro	0.974	0.984	0.687	1e-173
15237625	458	BTB/POZ domain with WD40/YVTN repeat-con	0.952	0.969	0.649	1e-167

>gi|359474193|ref|XP_003631414.1| PREDICTED: BTB/POZ domain-containing protein At5g41330-like [Vitis vinifera]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/452 (75%), Positives = 389/452 (86%), Gaps = 8/452 (1%)

Query: 21  DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR------FIDRDPELFSILLSL 74
           +SNIVTIDVGGQIFQTTKQTL LAGPKSL SK+ D          FIDRDP+LFSILLSL
Sbjct: 15  ESNIVTIDVGGQIFQTTKQTLTLAGPKSLFSKILDLPASAQIGFPFIDRDPDLFSILLSL 74

Query: 75  LRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSP 134
           LRTGNLPSKAKA D++DL  E+KFY IESLL++S SNPSQFDAF+LEKSLILPLNGRDSP
Sbjct: 75  LRTGNLPSKAKAVDLQDLFSEAKFYGIESLLVSSLSNPSQFDAFNLEKSLILPLNGRDSP 134

Query: 135 SAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGL 194
           SAI+TT +G++HV+HGSKITSFDWS+++KSTILT F+AVDSLLALSP VAAAGATDFSGL
Sbjct: 135 SAISTTMFGSVHVAHGSKITSFDWSLQRKSTILTRFSAVDSLLALSPSVAAAGATDFSGL 194

Query: 195 QVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKP 254
           Q+LDLENGYVKETLNWENVTRSSSTVQAIGSS K LF SFESGRRNSNSI+V+DI +LKP
Sbjct: 195 QILDLENGYVKETLNWENVTRSSSTVQAIGSSPKFLFTSFESGRRNSNSIVVFDIENLKP 254

Query: 255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW 314
           V+EIG NEIYG D++S IPATKL W+S YNLL+ASGSHS  S V GNIK WD+RSGN+ W
Sbjct: 255 VSEIGTNEIYGADLDSGIPATKLSWISDYNLLMASGSHSGPSGVCGNIKLWDVRSGNLVW 314

Query: 315 EVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRK 374
           E+K++VDCFSDVTVS+NLSAI+KVG+NSGEV  MDLR LG  + W+  G+ R++VNGK K
Sbjct: 315 ELKEKVDCFSDVTVSENLSAIFKVGVNSGEVFLMDLRNLGAMNTWVPTGETRRVVNGK-K 373

Query: 375 EGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGS 434
           EG GCKI  H NQVFC KGG +ELWSE+ MGS    E G L+ERV+R+NLMGR  DMGGS
Sbjct: 374 EGVGCKIGSHGNQVFCSKGGNLELWSEVFMGSTIKSEDG-LQERVYRRNLMGRAKDMGGS 432

Query: 435 KITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           +IT+LSFGGNKMFVTRK QQ+VEVWQSS RGF
Sbjct: 433 RITHLSFGGNKMFVTRKDQQSVEVWQSSVRGF 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537509|ref|XP_002509821.1| potassium channel tetramerization domain-containing protein, putative [Ricinus communis] gi|223549720|gb|EEF51208.1| potassium channel tetramerization domain-containing protein, putative [Ricinus communis]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/476 (71%), Positives = 394/476 (82%), Gaps = 12/476 (2%)

Query: 1   MPSIATSMPPSKSKS----KSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS 56
           MP  A++M     K+     + S  S I+TIDVGGQIFQTTKQTL+L+GPKSL S+L +S
Sbjct: 1   MPPFASTMATQSQKNLNFPNTYSPQSEIITIDVGGQIFQTTKQTLSLSGPKSLFSQLTES 60

Query: 57  TH---RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPS 113
           T    RFIDRDPELFS++LSLLRTGNLPSKAK FDIEDLI ESKFYNIESLLINS SNPS
Sbjct: 61  TQLGPRFIDRDPELFSVMLSLLRTGNLPSKAKGFDIEDLIAESKFYNIESLLINSLSNPS 120

Query: 114 QFDAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAV 173
           QFDAF+LEKSL LPLNGRD  S IATT +GTLHV+HGSKITSFDWS+R+KSTILT FTA+
Sbjct: 121 QFDAFNLEKSLTLPLNGRDFASTIATTPFGTLHVAHGSKITSFDWSLRRKSTILTQFTAI 180

Query: 174 DSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVS 233
           DSLLA+SP +AAAGATDFSG+Q+LDLE G+V+ TL WENVTRSSSTVQAIGSS ++LF S
Sbjct: 181 DSLLAISPNLAAAGATDFSGMQILDLEKGFVRATLCWENVTRSSSTVQAIGSSSEYLFTS 240

Query: 234 FESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHS 293
           FESGRRNSNSIMVYD+++L PV EIG  EIYG D++SAIPATKL+WV SYN+++ASGSHS
Sbjct: 241 FESGRRNSNSIMVYDLHTLSPVTEIGHCEIYGADLDSAIPATKLKWVESYNMVMASGSHS 300

Query: 294 DISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353
             S + GN++ WDIRSGNV WE+K+ +DCFSD+T SD+LSAI+KVG+NSGEV Y DLRKL
Sbjct: 301 GPSGMLGNVRLWDIRSGNVVWELKERLDCFSDITTSDSLSAIFKVGVNSGEVFYTDLRKL 360

Query: 354 GD---SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSR 410
           GD   S+ W CLGD RK++N K KEG GCKIE H NQVFC K G++E+WSE+ M S K  
Sbjct: 361 GDGESSNPWTCLGDNRKVLNVK-KEGLGCKIESHGNQVFCSKVGDVEVWSEVAMNSSKKG 419

Query: 411 EGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           E   L  RVFR+NLMGRV D GGS+IT L+FGGNKMF+TRK  Q+VEVWQSS RGF
Sbjct: 420 E-DELPNRVFRRNLMGRVKDTGGSRITKLAFGGNKMFMTRKDHQSVEVWQSSVRGF 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074953|ref|XP_002304503.1| predicted protein [Populus trichocarpa] gi|222841935|gb|EEE79482.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/454 (72%), Positives = 384/454 (84%), Gaps = 8/454 (1%)

Query: 19  SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTH---RFIDRDPELFSILLSLL 75
           S  S+IVTI+VGGQIFQTT QTL LAGP SL S+L++ TH    FIDRDPELFSILLSLL
Sbjct: 18  STGSSIVTINVGGQIFQTTDQTLTLAGPSSLFSQLSELTHLGPHFIDRDPELFSILLSLL 77

Query: 76  RTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPS 135
           RTGNLPSKAK++D++DLIEESKFY IESLL+NS SNPSQFD F+L+++LILPLN RD+ S
Sbjct: 78  RTGNLPSKAKSYDLQDLIEESKFYKIESLLVNSLSNPSQFDPFNLQETLILPLNSRDTAS 137

Query: 136 AIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQ 195
           A+ATT YGTLHVSHGSKITSFDWS+++KST LT FTA+DS+LA+SP + A GATDFSGLQ
Sbjct: 138 AVATTPYGTLHVSHGSKITSFDWSLQRKSTTLTQFTAIDSMLAISPNLVATGATDFSGLQ 197

Query: 196 VLDLE-NGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKP 254
           +LDLE  G+V ETLNWENVT+S STVQAIGSS+  LF SFES RRNSNSIMVYD+ +  P
Sbjct: 198 ILDLEKKGFVLETLNWENVTKSGSTVQAIGSSNDMLFTSFESSRRNSNSIMVYDLKTFSP 257

Query: 255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW 314
           V EIG  EI+G D++SAIPATKL+WV SYN+++A+GSHS  S V GN+KFWDIRSGNV W
Sbjct: 258 VTEIGHYEIFGADLDSAIPATKLKWVESYNVVMAAGSHSGPSGVLGNVKFWDIRSGNVVW 317

Query: 315 EVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSE--WICLGDGRKMVNGK 372
           E K++VDCFSD+TVSD+LS+I+KVG+NSGEV   DLRKLG      W+CLGD RK+ N  
Sbjct: 318 EFKEKVDCFSDITVSDSLSSIFKVGVNSGEVFNADLRKLGSEGHDSWVCLGDDRKVGN-V 376

Query: 373 RKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMG 432
           RKEG GCKIE H NQVFC KGG+IELWSE+VMGS + RE G L ERVFRKNLMGRV DM 
Sbjct: 377 RKEGVGCKIEAHGNQVFCSKGGDIELWSEVVMGSLRKREEG-LPERVFRKNLMGRVKDME 435

Query: 433 GSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           GS++TNL+FGGNKMFVTRK +Q+VEVWQSS RGF
Sbjct: 436 GSRVTNLAFGGNKMFVTRKDRQSVEVWQSSVRGF 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452300|ref|XP_004143897.1| PREDICTED: BTB/POZ domain-containing protein At5g41330-like [Cucumis sativus]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/451 (69%), Positives = 381/451 (84%), Gaps = 6/451 (1%)

Query: 21  DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR---FIDRDPELFSILLSLLRT 77
           +SNIVT++VGG +FQTTKQTLA+AG  SLLS ++DS+     FIDRDP+LFS++LSLLRT
Sbjct: 23  ESNIVTVNVGGHLFQTTKQTLAIAGSSSLLSTISDSSQSLVPFIDRDPDLFSLILSLLRT 82

Query: 78  GNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAI 137
           G LPSKAKAFD++DLI ES+FY +ESLLINS SNPSQF+AF+LEKSLILPLNGRDSPS I
Sbjct: 83  GYLPSKAKAFDLQDLISESQFYGVESLLINSLSNPSQFEAFNLEKSLILPLNGRDSPSTI 142

Query: 138 ATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVL 197
           A+T +G+LHV+HG KITSFDWS+++K+TILT F+ +DSLLALSP +AAAGATDFSGLQ+L
Sbjct: 143 ASTPFGSLHVAHGGKITSFDWSLQRKTTILTQFSVIDSLLALSPSLAAAGATDFSGLQIL 202

Query: 198 DLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNE 257
           +L+ G VK  LNWENVTRSSSTVQAIG+S + LF SFESGRRNSNSIM+YD+ +  PV E
Sbjct: 203 NLQTGQVKSILNWENVTRSSSTVQAIGASSELLFTSFESGRRNSNSIMIYDLQTFNPVTE 262

Query: 258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317
           I  NEIYG +I+SAIPAT L+WV+ YNLL+ASGSHS  S V GNIKFWDIRSGN+AWEVK
Sbjct: 263 IAHNEIYGAEIDSAIPATMLKWVAGYNLLMASGSHSGPSGVQGNIKFWDIRSGNIAWEVK 322

Query: 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF 377
           ++VDCFSD+TV +NLSAI+K+G++SGEV   DLRKLGD + WICLGD  K++NGK K G 
Sbjct: 323 EKVDCFSDMTVCENLSAIFKIGVSSGEVYSADLRKLGDENPWICLGDRMKVMNGK-KVGV 381

Query: 378 GCKIECHANQVFCGK-GGEIELWSEIVMGSRKSREGG-PLEERVFRKNLMGRVTDMGGSK 435
           G KIE + NQVFC + GG IELWSE+ +G+  ++EGG  LEERVFRKNLMGR+ D+GG K
Sbjct: 382 GGKIESYGNQVFCSREGGSIELWSEVTVGNGGNKEGGLGLEERVFRKNLMGRMKDLGGGK 441

Query: 436 ITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           +  L FGGNKMFV RK +Q VEVW+SS +GF
Sbjct: 442 VMKLGFGGNKMFVIRKDEQCVEVWKSSGKGF 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053885|ref|XP_002298028.1| predicted protein [Populus trichocarpa] gi|222845286|gb|EEE82833.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/451 (70%), Positives = 375/451 (83%), Gaps = 8/451 (1%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTH---RFIDRDPELFSILLSLLRTG 78
           SNIVTI+VGG+IFQTT QTLA AGPKSLLS+L++       FIDRDP+LFSILLSLLRTG
Sbjct: 21  SNIVTINVGGRIFQTTDQTLAQAGPKSLLSQLSELNQLVPHFIDRDPDLFSILLSLLRTG 80

Query: 79  NLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIA 138
           NLPSKAK++D++DLIEESKFY IESLL+NS SNPSQFD F+L+K++ILPLN RD+ SAI 
Sbjct: 81  NLPSKAKSYDLKDLIEESKFYKIESLLVNSLSNPSQFDPFNLQKTVILPLNSRDTASAIT 140

Query: 139 TTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLD 198
            T +G+LHVSHGSKITSFDWS++ KST LT FTA+DS+LA+SP + A GATDFSGLQ+LD
Sbjct: 141 ATPHGSLHVSHGSKITSFDWSLQNKSTALTQFTAIDSMLAISPNLVAVGATDFSGLQILD 200

Query: 199 LEN-GYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNE 257
           LE  G V ETLNWENVT+S STVQAIGSS+  LF SFES RRNSNSI+VYD+ +L PV E
Sbjct: 201 LEKKGLVLETLNWENVTKSGSTVQAIGSSNDLLFTSFESSRRNSNSILVYDLKTLSPVTE 260

Query: 258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317
           IG  EI+G D++SAIPATKL+WV SYN+++ASGSHS  S V GN+KFWDIRSG V WE K
Sbjct: 261 IGHYEIFGADLDSAIPATKLKWVESYNVVMASGSHSGPSGVLGNVKFWDIRSGCVVWEFK 320

Query: 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDS--SEWICLGDGRKMVNGKRKE 375
           ++VDCFSD+TVSDNLS+I+KVG+NSGEV Y DLRKLG      W+CLGD RK+ N  RKE
Sbjct: 321 EKVDCFSDITVSDNLSSIFKVGVNSGEVFYADLRKLGSEGIDSWVCLGDERKVGN-VRKE 379

Query: 376 GFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSK 435
           G GCKIE H NQVFC +GG+IELWSE+VM S K RE G L ERVFRKNLMGRV DM G +
Sbjct: 380 GVGCKIEAHGNQVFCSRGGDIELWSEVVMDSSKKREEG-LPERVFRKNLMGRVKDMAGPR 438

Query: 436 ITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           +TNL+FGG++MFVT K QQ+VEVWQSS  G 
Sbjct: 439 VTNLAFGGDRMFVTWKDQQSVEVWQSSVSGL 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513375|ref|XP_003525389.1| PREDICTED: BTB/POZ domain-containing protein At5g41330-like [Glycine max]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 323/471 (68%), Positives = 383/471 (81%), Gaps = 18/471 (3%)

Query: 1   MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTH-- 58
           MP  A S P    K      DS+IV+IDVGGQ+FQTTKQTL  AGPK+  S++A  +   
Sbjct: 1   MPPFAGSEPVGFPKP-----DSDIVSIDVGGQLFQTTKQTLTSAGPKTFFSRIAAESSGL 55

Query: 59  --RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFD 116
              F+DRDP+LFS+LLSLLRTGNLPSKAK FD++DL  ESKFY IESLL+NS SNPSQ +
Sbjct: 56  HTPFLDRDPDLFSLLLSLLRTGNLPSKAKTFDLQDLTIESKFYGIESLLVNSLSNPSQLE 115

Query: 117 AFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSL 176
            F+L+KSL+LPLNGRDSPSA+ATT  G+LHV+HGSKITSFDWS+R+KST+LT FTAVDSL
Sbjct: 116 PFNLQKSLLLPLNGRDSPSALATTASGSLHVAHGSKITSFDWSLRRKSTVLTQFTAVDSL 175

Query: 177 LALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFES 236
           LALSP +AAAGA DFSGLQ+LDL+ G V+ETLNWENVT+S STVQAIGSS +++FVSFES
Sbjct: 176 LALSPSLAAAGANDFSGLQILDLDKGRVRETLNWENVTKSGSTVQAIGSSPENMFVSFES 235

Query: 237 GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS 296
            RRNSNSIMVYD+++L PV EIG NEI+G DI+SAIP TKL+W+  YNLL+ASGSHS  S
Sbjct: 236 SRRNSNSIMVYDLHTLTPVTEIGHNEIFGADIDSAIPTTKLQWIEGYNLLMASGSHSGPS 295

Query: 297 KVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD- 355
            V+GNI+ WD+RSGNV WEV ++VDCF+DV V D LS I+KVG+NSGE SY+DLR L   
Sbjct: 296 GVSGNIRLWDVRSGNVVWEVSEKVDCFADVAVCDALSVIFKVGVNSGEASYVDLRNLSSG 355

Query: 356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPL 415
            S W+CLGD RK++NGK KEGFGCKIE   NQVFC KGG++ELWSE+VMGS  S      
Sbjct: 356 ESAWVCLGDKRKILNGK-KEGFGCKIETQGNQVFCTKGGDMELWSEVVMGSGNS------ 408

Query: 416 EERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
             R+F+KNLMGRV DMGG+KITNL+FGG+ MF+TRK QQ VEVWQSSSR F
Sbjct: 409 -GRIFKKNLMGRVRDMGGAKITNLAFGGSTMFLTRKDQQCVEVWQSSSREF 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147225285|dbj|BAF62469.1| hypothetical protein [Nicotiana tabacum]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/472 (67%), Positives = 381/472 (80%), Gaps = 15/472 (3%)

Query: 1   MPSIATSMPPSKSKSKSKSIDS--NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA---D 55
           MP  A S P S + S++ SIDS  NI+TIDVGGQ+FQTTKQTL  +G KSLLS++    D
Sbjct: 1   MPPFAGSNPLSYNFSRN-SIDSASNIITIDVGGQLFQTTKQTLKQSGSKSLLSEITNFND 59

Query: 56  STHRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQF 115
               FIDRDPE+FSILLSLLRTGNLPSKAK FDI+DLI ES+FY +E LL+NSQSNPSQF
Sbjct: 60  GVLPFIDRDPEIFSILLSLLRTGNLPSKAKTFDIQDLIFESQFYGVEHLLLNSQSNPSQF 119

Query: 116 DAFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDS 175
           + F LEKS+ILPL+GRDSP+AI+TT  G++ V+HG KITSFDWS+++KSTILT F  +DS
Sbjct: 120 EPFDLEKSVILPLSGRDSPTAISTTQLGSVQVAHGCKITSFDWSLKRKSTILTQFAGIDS 179

Query: 176 LLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFE 235
           +L+LSP + AAGATDFSGLQ++D+  G+VKETLNWENVT+S STVQAIGSS   LF SFE
Sbjct: 180 MLSLSPSIVAAGATDFSGLQIIDVSKGFVKETLNWENVTKSGSTVQAIGSSKDFLFTSFE 239

Query: 236 SGRRNSNSIMVYDIN-SLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD 294
           S RRNSN IM+YD+N S +PV EIG  EI+G +++SAIPATKL W+SS+NLL+A+GSHS 
Sbjct: 240 SSRRNSNCIMIYDLNDSFRPVAEIGHYEIFGAELDSAIPATKLSWISSHNLLMAAGSHSG 299

Query: 295 ISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354
            S V GNI+FWDIRSGNV WE+K+ VDCFSD TVSD+LSAI KVG++SGEV   DLR +G
Sbjct: 300 PSGVRGNIRFWDIRSGNVVWEIKENVDCFSDCTVSDDLSAILKVGVHSGEVFISDLRNIG 359

Query: 355 DSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGP 414
             + W CLGD RK+ NGK KEGFGCKIE H NQVFC KGG +ELWSE+++G+        
Sbjct: 360 GENSWTCLGDQRKVTNGK-KEGFGCKIESHGNQVFCSKGGNLELWSEVLIGNS------- 411

Query: 415 LEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           +++RVFRKN MGR  D+ G+KIT+ SFGGNKMFVTRK QQ VEVWQSS RGF
Sbjct: 412 IKDRVFRKNSMGRAKDICGNKITHFSFGGNKMFVTRKDQQFVEVWQSSVRGF 463

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495768|ref|XP_004159939.1| PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At5g41330-like [Cucumis sativus]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/451 (69%), Positives = 380/451 (84%), Gaps = 6/451 (1%)

Query: 21  DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR---FIDRDPELFSILLSLLRT 77
           +SNIVT++VGG +FQTTKQTLA+AG  SLLS ++DS+     FIDRDP+LFS++LSLLRT
Sbjct: 23  ESNIVTVNVGGHLFQTTKQTLAIAGSSSLLSTISDSSQSLVPFIDRDPDLFSLILSLLRT 82

Query: 78  GNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAI 137
           G LPSKAKAFD++DLI ES+FY +ESLLINS SNPSQF+AF+LEKSLILPLNGRDSPS I
Sbjct: 83  GYLPSKAKAFDLQDLISESQFYGVESLLINSLSNPSQFEAFNLEKSLILPLNGRDSPSTI 142

Query: 138 ATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVL 197
           A+T +G+LHV+HG KITSFDWS+++K+TILT F+ +DSLLALSP +AAAGATDFSGLQ+L
Sbjct: 143 ASTPFGSLHVAHGGKITSFDWSLQRKTTILTQFSVIDSLLALSPSLAAAGATDFSGLQIL 202

Query: 198 DLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNE 257
           +L+ G VK  LNWENVTRSSSTVQAIG+S + LF SFESGRRNSNSIM+YD+ +  PV E
Sbjct: 203 NLQTGQVKSILNWENVTRSSSTVQAIGASSELLFTSFESGRRNSNSIMIYDLQTFNPVTE 262

Query: 258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317
           I  NEIYG +I+SAIPAT L+WV+ YNLL+ASGSHS  S   GNIKFWDIRSGN+AWEVK
Sbjct: 263 IAHNEIYGAEIDSAIPATMLKWVAGYNLLMASGSHSGPSGXQGNIKFWDIRSGNIAWEVK 322

Query: 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF 377
           ++VDCFSD+TV +NLSAI+K+G++SGEV   DLRKLGD + WICLGD  K++NGK K G 
Sbjct: 323 EKVDCFSDMTVCENLSAIFKIGVSSGEVYSADLRKLGDENPWICLGDRMKVMNGK-KVGV 381

Query: 378 GCKIECHANQVFCGK-GGEIELWSEIVMGSRKSREGG-PLEERVFRKNLMGRVTDMGGSK 435
           G KIE + NQVFC + GG IELWSE+ +G+  ++EGG  LEERVFRKNLMGR+ D+GG K
Sbjct: 382 GGKIESYGNQVFCSREGGSIELWSEVTVGNGGNKEGGLGLEERVFRKNLMGRMKDLGGGK 441

Query: 436 ITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
           +  L FGGNKMFV RK +Q VEVW+SS +GF
Sbjct: 442 VMKLGFGGNKMFVIRKDEQCVEVWKSSGKGF 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528515|ref|XP_003532848.1| PREDICTED: BTB/POZ domain-containing protein At5g41330-like [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 325/473 (68%), Positives = 384/473 (81%), Gaps = 19/473 (4%)

Query: 1   MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTH-- 58
           MP  A S P    K      DSNIV+IDVGGQ+FQTTKQTL  AGPK+  S++A  +   
Sbjct: 1   MPPFAGSEPVGFPKP-----DSNIVSIDVGGQLFQTTKQTLTSAGPKTFFSRIAAESSGL 55

Query: 59  --RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFD 116
              F+DRDPELFS+LLSLLRTGNLPSKAKAFD++DLI ESKFY IESLL+NS SNPSQ +
Sbjct: 56  HTPFVDRDPELFSLLLSLLRTGNLPSKAKAFDLQDLIIESKFYGIESLLVNSLSNPSQLE 115

Query: 117 AFSLEKSLILPLNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSL 176
            F+L+KSL+LPLNGRDSPSA+A T  G LHV+HGSKITSFDWS+R+KST+LT FTAVDSL
Sbjct: 116 PFNLQKSLLLPLNGRDSPSALAATASGALHVAHGSKITSFDWSLRRKSTVLTQFTAVDSL 175

Query: 177 LALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFES 236
           LALSP +AAAGA DFSGLQ+LDLE G V+ET+NWENVT+S STVQAIGSS +++FVSFES
Sbjct: 176 LALSPALAAAGANDFSGLQILDLEKGRVRETINWENVTKSGSTVQAIGSSPENMFVSFES 235

Query: 237 GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS 296
            RRNSNSIMVYD+++L PV EI  NEI+G +I+SAIPATKL+W+  YNLL+ASGSHS  S
Sbjct: 236 SRRNSNSIMVYDLHTLTPVTEISHNEIFGANIDSAIPATKLQWIEGYNLLMASGSHSGPS 295

Query: 297 KVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL--G 354
            V GNI+ WD+RSGNV WEV ++VDCF+DV V D+LS I+KVG+NSGE SY+DLR L  G
Sbjct: 296 GVNGNIRLWDVRSGNVVWEVSEKVDCFADVAVCDSLSVIFKVGVNSGEASYVDLRNLSSG 355

Query: 355 DSSEWICLGDG-RKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGG 413
             + W+CLGD  RK++NGK KEGFGCK+E   NQVFC KGGE+ELWSE+VMGS  S    
Sbjct: 356 GENAWVCLGDNKRKILNGK-KEGFGCKVETQGNQVFCTKGGEVELWSEVVMGSGNS---- 410

Query: 414 PLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466
               R+F+KNLMGRV DMGG+KITNL+FGG+ MF+TRK QQ VEVWQSSSR F
Sbjct: 411 --SGRIFKKNLMGRVRDMGGAKITNLAFGGSTMFLTRKDQQCVEVWQSSSREF 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237625|ref|NP_198949.1| BTB/POZ domain with WD40/YVTN repeat-containing protein [Arabidopsis thaliana] gi|75171793|sp|Q9FN67.1|Y5133_ARATH RecName: Full=BTB/POZ domain-containing protein At5g41330 gi|9758042|dbj|BAB08505.1| unnamed protein product [Arabidopsis thaliana] gi|54606858|gb|AAV34777.1| At5g41330 [Arabidopsis thaliana] gi|110741213|dbj|BAF02157.1| hypothetical protein [Arabidopsis thaliana] gi|110741215|dbj|BAF02158.1| hypothetical protein [Arabidopsis thaliana] gi|332007283|gb|AED94666.1| BTB/POZ domain with WD40/YVTN repeat-containing protein [Arabidopsis thaliana]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/448 (64%), Positives = 362/448 (80%), Gaps = 4/448 (0%)

Query: 21  DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNL 80
           +SN+V+I+VGG+IFQTTKQTL+LAG  SLLS+LA  T RF+DRDP+LFS+LL +LRTGNL
Sbjct: 9   ESNVVSINVGGRIFQTTKQTLSLAGTDSLLSQLATETTRFVDRDPDLFSVLLYILRTGNL 68

Query: 81  PSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATT 140
           P++++AFD+ DLI+ES++Y IES LI+S SN SQF+ F L +S IL LNGRDSPS+I+ T
Sbjct: 69  PARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLRRSRILQLNGRDSPSSISPT 128

Query: 141 NYGT-LHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDL 199
             G  LHV+HGSKITSFDWS+R+KST+LT+F+AVDSLL +SPGV AAGATDF GLQ++DL
Sbjct: 129 VIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLEISPGVLAAGATDFPGLQIIDL 188

Query: 200 ENG-YVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI 258
           +NG +V+ TLNWENVTRSSSTVQAIGSS + LF SFES RRNSNSIMVYD++SL PV+EI
Sbjct: 189 DNGGFVRTTLNWENVTRSSSTVQAIGSSHEFLFTSFESSRRNSNSIMVYDLSSLLPVSEI 248

Query: 259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318
              EIYG DI+SAIP+TKL+W+ S NLL+ SGSH+  S V G+I+FWD+RS N+ WE+K+
Sbjct: 249 DHCEIYGADIDSAIPSTKLKWIQSCNLLMVSGSHTSPSGVNGHIRFWDVRSRNMVWEIKE 308

Query: 319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378
             DCFSDVTVSDNLSA++KVG+ SGEV Y DLR LG    W+CLG+ +K  N   + G G
Sbjct: 309 AQDCFSDVTVSDNLSAVFKVGVTSGEVFYADLRSLGTKDPWVCLGEEKKR-NLNERRGVG 367

Query: 379 CKIECHANQVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKIT 437
            KIE + N VFC  KG  IELWSE++ G   +     LEERVFRKN +G++ D G +KIT
Sbjct: 368 SKIESYGNHVFCSSKGSGIELWSEVITGLVGNASRDVLEERVFRKNSLGKLADSGENKIT 427

Query: 438 NLSFGGNKMFVTRKGQQTVEVWQSSSRG 465
            L+FGGN+MFVTRK QQ+V+VWQS SRG
Sbjct: 428 GLAFGGNRMFVTRKDQQSVQVWQSPSRG 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
TAIR|locus:2177861	458	AT5G41330 [Arabidopsis thalian	0.952	0.969	0.649	3.5e-155
TAIR|locus:2095279	460	AT3G09030 [Arabidopsis thalian	0.903	0.915	0.325	1.1e-57
TAIR|locus:2126719	441	AT4G30940 [Arabidopsis thalian	0.866	0.916	0.265	1.7e-19
TAIR|locus:2047540	441	AT2G24240 [Arabidopsis thalian	0.804	0.850	0.263	1.6e-16
WB|WBGene00022574	155	ZC239.16 [Caenorhabditis elega	0.182	0.548	0.347	2.3e-08
WB|WBGene00015914	207	C17F4.8 [Caenorhabditis elegan	0.173	0.391	0.391	1.3e-06
FB|FBgn0037758	730	CG9467 [Drosophila melanogaste	0.173	0.110	0.395	2.4e-06
WB|WBGene00022572	223	ZC239.14 [Caenorhabditis elega	0.195	0.408	0.35	4.8e-06
UNIPROTKB|F1P1F0	184	KCTD5 "Uncharacterized protein	0.169	0.429	0.413	5e-06
ZFIN|ZDB-GENE-040426-2843	313	kctd10 "potassium channel tetr	0.332	0.495	0.259	8.5e-06

TAIR|locus:2177861 AT5G41330 [Arabidopsis thaliana (taxid:3702)]

 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 291/448 (64%), Positives = 362/448 (80%)

Query:    21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPELFSILLSLLRTGNL 80
             +SN+V+I+VGG+IFQTTKQTL+LAG  SLLS+LA  T RF+DRDP+LFS+LL +LRTGNL
Sbjct:     9 ESNVVSINVGGRIFQTTKQTLSLAGTDSLLSQLATETTRFVDRDPDLFSVLLYILRTGNL 68

Query:    81 PSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIATT 140
             P++++AFD+ DLI+ES++Y IES LI+S SN SQF+ F L +S IL LNGRDSPS+I+ T
Sbjct:    69 PARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLRRSRILQLNGRDSPSSISPT 128

Query:   141 NYGT-LHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDL 199
               G  LHV+HGSKITSFDWS+R+KST+LT+F+AVDSLL +SPGV AAGATDF GLQ++DL
Sbjct:   129 VIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLEISPGVLAAGATDFPGLQIIDL 188

Query:   200 ENG-YVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI 258
             +NG +V+ TLNWENVTRSSSTVQAIGSS + LF SFES RRNSNSIMVYD++SL PV+EI
Sbjct:   189 DNGGFVRTTLNWENVTRSSSTVQAIGSSHEFLFTSFESSRRNSNSIMVYDLSSLLPVSEI 248

Query:   259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318
                EIYG DI+SAIP+TKL+W+ S NLL+ SGSH+  S V G+I+FWD+RS N+ WE+K+
Sbjct:   249 DHCEIYGADIDSAIPSTKLKWIQSCNLLMVSGSHTSPSGVNGHIRFWDVRSRNMVWEIKE 308

Query:   319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378
               DCFSDVTVSDNLSA++KVG+ SGEV Y DLR LG    W+CLG+ +K  N   + G G
Sbjct:   309 AQDCFSDVTVSDNLSAVFKVGVTSGEVFYADLRSLGTKDPWVCLGEEKKR-NLNERRGVG 367

Query:   379 CKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKIT 437
              KIE + N VFC  KG  IELWSE++ G   +     LEERVFRKN +G++ D G +KIT
Sbjct:   368 SKIESYGNHVFCSSKGSGIELWSEVITGLVGNASRDVLEERVFRKNSLGKLADSGENKIT 427

Query:   438 NLSFGGNKMFVTRKGQQTVEVWQSSSRG 465
              L+FGGN+MFVTRK QQ+V+VWQS SRG
Sbjct:   428 GLAFGGNRMFVTRKDQQSVQVWQSPSRG 455

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2095279 AT3G09030 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 150/461 (32%), Positives = 247/461 (53%)

Query:    25 VTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-----FIDRDPELFSILLSLLRTGN 79
             V ++VGG+IF+T   T+  + P SLL+ L+ ST       FIDRDPE+F+++L+LLRTG 
Sbjct:    10 VKLNVGGEIFETNASTIQSSCPDSLLAALSTSTSHGSNPVFIDRDPEIFAVILNLLRTGR 69

Query:    80 LPSKAKA-FDIEDLIEESKFYNIESLLINSQSNPSQ--FDAFSLEKSLILPLNGRDSPSA 136
             LP+ +   F  ++L++E+ +Y +ESLL  +   P    FDA SL  +++   +G   PSA
Sbjct:    70 LPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLGFDA-SLVSTIVPAADG--VPSA 126

Query:   137 I-ATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQ 195
             + AT    +L ++HG +I+ +DWS+    T+ TH   + S+  +    AA G+   SGL 
Sbjct:   127 LTATAGDASLWIAHGGQISVYDWSLSHAGTVRTHLNDITSICRVWGEAAAIGSGSASGLH 186

Query:   196 VLDLENG-YVKETLNW---ENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINS 251
               DL  G Y+  T +W   E+     + V A+  S+  +F SF+   R  NS++  D ++
Sbjct:   187 FYDLSGGRYIGST-HWTDPEDPRIHKARVAAVADSEGGVFASFDCLHRE-NSVLQIDKST 244

Query:   252 LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN 311
             L+    IGQ    G   ++ +P  KLRW+ +  LL+ S     +   +G I+ WD RS N
Sbjct:   245 LQVAAVIGQQS--GNSAKTTVPE-KLRWLPAKGLLVGSAVQRGVFGCSGYIRIWDPRSRN 301

Query:   312 VAWEVKDEV--------DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLG 363
             + WE  +          D  +D+ V    S ++KV   SG++   D+RKLG+   W+ + 
Sbjct:   302 IVWETNEPGSGRSTRFGDALADMDVDVEDSILFKVCSKSGDLGMADIRKLGEDP-WVYMS 360

Query:   364 DGRKMVNGKRKEGFGCKI-ECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRK 422
             D       K  +G G  +  C+  QV   +GG +E+WS +    ++   G P+     R+
Sbjct:   361 DENPGA-WKAGDGGGYSVVHCYRKQVLAARGGALEVWSSV----KEKTSGDPIR----RR 411

Query:   423 NLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463
             N + +  D     I+ +  GG+++FV+R+  + VEVW++SS
Sbjct:   412 NFVDKEDDSKRGMISKIEAGGDRLFVSRECMEGVEVWETSS 452

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2126719 AT4G30940 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 125/471 (26%), Positives = 201/471 (42%)

Query:    20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-------FIDRDPELFSILL 72
             + ++ +  +VGG+IF+TT  TLA AG  S    L D           FIDR+P+ F++LL
Sbjct:     3 LSNDRIKFNVGGRIFETTATTLANAGRDSFFGALFDENWNLSQPGDLFIDRNPDCFAVLL 62

Query:    73 SLLRTG--NLPSKAKAFDIEDLI-EESKFYNIESLLINSQSNPSQFDAFSLEKSL--ILP 127
              LLRTG  N+P        E L+ +E+ FY +   L  ++  P   +   L +S+  I P
Sbjct:    63 DLLRTGDLNIPPNIP----ERLLHKEAMFYGLIDHLRTAKWGPFDGNRLHLSRSVTGIAP 118

Query:   128 LNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSLLALSPG--VAA 185
              +G    +AI     G   ++HGS +  FDW + +  TI   +  V+ +  +  G  V +
Sbjct:   119 GDG----TAIRAGPDGGCCIAHGSVVHVFDWMLEEHPTINLDYQRVNDVGWIDSGNIVLS 174

Query:   186 A----GATDFSGLQVLDLENGYV--KETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRR 239
             A    G  D  G+ +    +G +  K  ++ +N  +S S      S D  +F S + GR 
Sbjct:   175 ACERLGRGD-GGMGLFSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTSCK-GRS 232

Query:   240 NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT 299
             N   I V+D ++ K V+   ++   G  +  A    KL+W+S  N LL +       K  
Sbjct:   233 NEYGIGVWDQSTGKQVDFFYESP--GWSLGDA---DKLQWLSGKNCLLVATLFP--RKDN 285

Query:   300 GNIKFWDIRSGNVAWEVKD-------EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352
               I   D R  N+ W   D       E     D    +  ++I  V     ++ ++DLR 
Sbjct:   286 CYISLLDFREKNMVWSWSDIGFLTMAEEKRVRDAIAMEESNSICVVN-EFEDLGFIDLRM 344

Query:   353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELW--SEIVMGSRKSR 410
              G  S        R M +    E    K+  H  Q+F      I ++  S+ V+ SR  R
Sbjct:   345 DGGGSSVRWSSRSRLMKSKMPDEPCYPKLALHEGQLFSSMNDSISVFCGSDWVLTSRLKR 404

Query:   411 EGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS 461
                                  GGS I + S GG+++F     +   +VW++
Sbjct:   405 S-------------------YGGS-ICDFSIGGDRLFALHSEENVFDVWET 435

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2047540 AT2G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 113/429 (26%), Positives = 182/429 (42%)

Query:    20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSL----------LSKLADSTHRFIDRDPELFS 69
             I  + +  +VGG++F+TT  TLA AG  S           LS L DS   F+DR+ + F+
Sbjct:     3 ISKDRIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSI-LFVDRNSDCFA 61

Query:    70 ILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSL--ILP 127
             +LL LLRTG+L   A   +   L  E+ FY +   +  ++  P   +   L  S+  I P
Sbjct:    62 VLLDLLRTGDLNVPANIPE-RLLHREASFYGLLDHVRTAKWGPFDGNRLRLSDSVKGIAP 120

Query:   128 LNGRDSPSAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSL-------LALS 180
              +G    +AI     G   V+HGS +  FDW + + S I   +  V+ +       + LS
Sbjct:   121 GDG----TAIRAGPDGGCCVAHGSVVHVFDWMLEEHSPINLDYQRVNDVGWIDSDNIVLS 176

Query:   181 PGVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRSSSTVQAIGSSDKHLFVSFESGR 238
                   G  D  G+ +    +G ++       EN  +S +      S D  +F S + GR
Sbjct:   177 -ACEKLGRGD-GGMGLFSSSSGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCK-GR 233

Query:   239 RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKV 298
              N   I V+D  + K  +   ++   G  +  A    KL+W++  N LL +       K 
Sbjct:   234 SNEYGIGVWDQITGKQTDFFYESP--GWSLGDA---DKLQWLNGKNCLLVATLFP--RKD 286

Query:   299 TGNIKFWDIRSGNVAWEVKD-----EVD--CFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351
                I   D R  N+ W   D      +D     D    ++ ++I  V     ++ ++DLR
Sbjct:   287 NCYISLLDFRDKNMVWSWSDIGSPMAIDEKRVRDAIAMEDSNSICVVN-EFEDLGFIDLR 345

Query:   352 KLGDSSEWICLGDGRKMVNGKRKEGFGC--KIECHANQVFCGKGGEIELWS--EIVMGSR 407
               G S  W       K++  K  +   C  K+  H  Q+F      I ++   + V+ SR
Sbjct:   346 MYGGSVRW---SSRSKLMKSKMPDE-PCYPKLALHEGQLFSSMNDSISVFCGPDWVLTSR 401

Query:   408 KSRE-GGPL 415
               R  GG +
Sbjct:   402 LRRSYGGSI 410

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

WB|WBGene00022574 ZC239.16 [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 32/92 (34%), Positives = 56/92 (60%)

Query:    22 SNIVTIDVGGQIFQTTKQTLALAGP--KSLLS-----KLADSTHRFIDRDPELFSILLSL 74
             S I+ +DVGG IF+T+K TL       K++L      K+  +   FIDR P+ F ++L+L
Sbjct:     2 SEIIKLDVGGTIFKTSKDTLTKFHSFFKTMLECKTGPKIEKTGCIFIDRSPKHFELILNL 61

Query:    75 LRTGNLPSKAKAFDIEDLIEESKFYNIESLLI 106
             +R G+LP      ++ +L+ E++FY ++ L++
Sbjct:    62 MRDGDLPLPEDERELRELMAEAQFYWLDGLVL 93

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00015914 C17F4.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query:    23 NIVTIDVGGQIFQTTKQTLALAGP--KSLLS-----KLADSTHRFIDRDPELFSILLSLL 75
             NIV ++VGG +FQT+K TL +     K +L      +  DS   FIDR P+ F I+L+ L
Sbjct:     6 NIVKLNVGGTVFQTSKSTLTMIDGFFKMMLESDIPLQKDDSNCIFIDRSPKHFDIILNFL 65

Query:    76 RTGN--LPSKAKAFDIEDLIEESKFYNIESLL 105
             R G+  LP + K  +I ++  E++FY +E L+
Sbjct:    66 RDGDVDLPEQEK--EINEVKREAQFYLLEELV 95

GO:0051260 "protein homooligomerization" evidence=IEA

FB|FBgn0037758 CG9467 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 36/91 (39%), Positives = 52/91 (57%)

Query:    22 SNIVTIDVGGQIFQTTKQTLA-------LAGPKSLLSKLADSTHR-FIDRDPELFSILLS 73
             S++V ++VGGQ F T++QTL         A     +S L D  +  FIDRDP LFSI+L+
Sbjct:    10 SDLVNLNVGGQRFSTSRQTLTWIPDTFFTALLSGRISSLRDEHNAIFIDRDPTLFSIILN 69

Query:    74 LLRTGNLPSKAKAFDIEDLIEESKFYNIESL 104
              LRT ++    K  +I  L  E+++Y I  L
Sbjct:    70 YLRTKDID--IKNCEIRALRHEAEYYGITPL 98

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

WB|WBGene00022572 ZC239.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 35/100 (35%), Positives = 58/100 (58%)

Query:    22 SNIVTIDVGGQIFQTTKQTLALAGP--KSLLS-----KLADSTHRFIDRDPELFSILLSL 74
             S IV +DVGG IF+T+K TL       K++L      KL +S   FIDR P+ F ++L+ 
Sbjct:     2 SEIVKLDVGGTIFKTSKSTLTKFNGFFKTMLECDIGLKLDESGCIFIDRSPKHFDLILNF 61

Query:    75 LRTGNLPSKAKAFDIEDLIEESKFYNIESLL--INSQSNP 112
             +R G++        +++L+ E++FY ++ L+   NS+  P
Sbjct:    62 MRDGDVALPNCELKLKELLVEAQFYLLDGLIEMCNSKIMP 101

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1P1F0 KCTD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 38/92 (41%), Positives = 50/92 (54%)

Query:    25 VTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSILLS 73
             V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  +L+
Sbjct:    46 VRLNVGGTCFLTTRQTLC-RDPKSFLFRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLN 104

Query:    74 LLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
              LR G L    K    E ++EE++FYNI SL+
Sbjct:   105 YLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 135

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040426-2843 kctd10 "potassium channel tetramerisation domain containing 10" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query:    22 SNIVTIDVGGQIFQTTKQTLALAGP--KSLLSK----LADSTHRF-IDRDPELFSILLSL 74
             S  V ++VGG ++ TT QTL       K++ S     L DS     IDR  + F  +L+ 
Sbjct:    31 SKYVKLNVGGALYYTTMQTLTKQDTMLKAMFSGRMEVLTDSEGWILIDRCGKHFGTILNY 90

Query:    75 LRTGNLPSKAKAFDIEDLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSP 134
             LR G +P      + E+L+ E+K+Y ++ L+   Q+     DA+     + L  + ++  
Sbjct:    91 LRDGVVPLPESRRETEELLAEAKYYLVQGLVDECQAALQNKDAYEPFCKVPLVTSSKEEQ 150

Query:   135 SAIATTNYGTLHVSHGSKITSFDWSMRKKSTILTHFTAVDSL 176
               IAT N  T+ + +      + ++      +L +    D L
Sbjct:   151 RLIATANKPTVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKL 192

GO:0051260 "protein homooligomerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN67	Y5133_ARATH	No assigned EC number	0.6495	0.9527	0.9694	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	466
pfam02214	92	pfam02214, K_tetra, K+ channel tetramerisation dom	8e-12
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	9e-12
pfam00651	101	pfam00651, BTB, BTB/POZ domain	7e-04

>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain

 Score = 61.0 bits (149), Expect = 8e-12
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLA-------DSTHR-FIDRDPELFSILLSLLR 76
           V ++VGG+ F+T+K TL    P +LL +L        D T+  F DR P+ F  +L+  R
Sbjct: 1   VRLNVGGKRFETSKSTLTRF-PDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYR 59

Query: 77  T-GNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
           T G L    +   ++  +EE +FY +  L I  
Sbjct: 60  TGGKLHRPEEV-CLDSFLEELEFYGLGELAIEL 91

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 25  VTIDVGGQIFQTTKQTLALAGP--KSLLS----KLADSTHRFIDRDPELFSILLSLLRTG 78
           VT+ VGG+ F   K  LA   P  K+L S    +   S     D  PE F  LL+ L TG
Sbjct: 2   VTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYTG 61

Query: 79  NLPSKAKAFDIEDLIEESKFYNIESL 104
            L    +  ++E+L+E + +  I  L
Sbjct: 62  KLDLPEE--NVEELLELADYLQIPGL 85

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 25  VTIDVGGQIFQTTKQTLALAGP--KSLLSKLADSTHRFIDRDPELFSILLSLLRTGNLPS 82
           VT+ VG + F   K  LA   P  K+L +   +      D  PE F  LL  + TG L  
Sbjct: 13  VTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVEITLEDVSPEDFEALLEFIYTGKLEI 72

Query: 83  KAKAFDIEDLIEESKFYNIESL 104
             +  +++DL+  +    I +L
Sbjct: 73  TEE--NVDDLLALADKLQIPAL 92

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
KOG2714	465	consensus SETA binding protein SB1 and related pro	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA03098	534	kelch-like protein; Provisional	99.98
PHA02713	557	hypothetical protein; Provisional	99.95
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.92
PHA02790	480	Kelch-like protein; Provisional	99.91
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.91
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.9
PLN02153	341	epithiospecifier protein	99.88
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.88
PHA03098	534	kelch-like protein; Provisional	99.88
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.87
PLN02193	470	nitrile-specifier protein	99.85
PLN02153	341	epithiospecifier protein	99.85
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.8
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	99.8
PLN02193	470	nitrile-specifier protein	99.79
KOG2716	230	consensus Polymerase delta-interacting protein PDI	99.69
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.68
KOG2715	210	consensus Uncharacterized conserved protein, conta	99.58
KOG2723	221	consensus Uncharacterized conserved protein, conta	99.5
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	99.46
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.44
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.23
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.2
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.19
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.04
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.87
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.63
KOG1230	521	consensus Protein containing repeated kelch motifs	98.61
KOG1230	521	consensus Protein containing repeated kelch motifs	98.58
PF13964	50	Kelch_6: Kelch motif	98.57
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	98.57
smart00612	47	Kelch Kelch domain.	98.36
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.25
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.22
PF13964	50	Kelch_6: Kelch motif	98.21
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.05
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.69
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.65
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	97.59
PLN00181	793	protein SPA1-RELATED; Provisional	97.58
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.54
KOG0286	343	consensus G-protein beta subunit [General function	97.52
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	97.51
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.46
KOG3840	438	consensus Uncharaterized conserved protein, contai	97.26
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.26
PTZ00421	493	coronin; Provisional	97.22
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.13
smart00612	47	Kelch Kelch domain.	97.09
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.03
PLN00181	793	protein SPA1-RELATED; Provisional	97.01
KOG4350	620	consensus Uncharacterized conserved protein, conta	96.93
PRK11028	330	6-phosphogluconolactonase; Provisional	96.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.83
PTZ00420	568	coronin; Provisional	96.81
PTZ00421	493	coronin; Provisional	96.69
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	96.61
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	96.56
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.35
KOG0266	456	consensus WD40 repeat-containing protein [General	96.27
KOG0296	399	consensus Angio-associated migratory cell protein	96.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.19
KOG0308	735	consensus Conserved WD40 repeat-containing protein	96.16
KOG3881	412	consensus Uncharacterized conserved protein [Funct	95.94
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.81
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	95.8
KOG0646	476	consensus WD40 repeat protein [General function pr	95.75
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	95.7
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.67
PTZ00420	568	coronin; Provisional	95.59
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.28
KOG0270	463	consensus WD40 repeat-containing protein [Function	94.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	94.87
PLN02772	398	guanylate kinase	94.79
PRK11028	330	6-phosphogluconolactonase; Provisional	94.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.71
KOG0783	1267	consensus Uncharacterized conserved protein, conta	94.64
PF13854	42	Kelch_5: Kelch motif	94.48
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	94.48
PF13415	49	Kelch_3: Galactose oxidase, central domain	94.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.36
KOG4591	280	consensus Uncharacterized conserved protein, conta	94.15
KOG2321	703	consensus WD40 repeat protein [General function pr	93.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.31
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	93.3
KOG0263	707	consensus Transcription initiation factor TFIID, s	93.21
KOG0316	307	consensus Conserved WD40 repeat-containing protein	93.14
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.14
KOG0279	315	consensus G protein beta subunit-like protein [Sig	93.12
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	93.1
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	92.9
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	92.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.55
PF13854	42	Kelch_5: Kelch motif	92.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.45
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.43
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	92.18
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.17
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.12
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	92.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.99
KOG0649	325	consensus WD40 repeat protein [General function pr	91.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	91.94
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.74
KOG0316	307	consensus Conserved WD40 repeat-containing protein	91.71
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	91.63
KOG0263	707	consensus Transcription initiation factor TFIID, s	91.53
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	91.19
KOG2048	691	consensus WD40 repeat protein [General function pr	91.07
KOG0266	456	consensus WD40 repeat-containing protein [General	90.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	90.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.41
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.65
KOG1539	910	consensus WD repeat protein [General function pred	89.19
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.09
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	88.99
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	88.93
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	88.49
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.39
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	88.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	88.36
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	87.58
KOG2055	514	consensus WD40 repeat protein [General function pr	87.5
KOG0270	463	consensus WD40 repeat-containing protein [Function	87.33
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	87.04
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	86.27
KOG4682	488	consensus Uncharacterized conserved protein, conta	85.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	85.46
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	84.54
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	84.54
KOG0288	459	consensus WD40 repeat protein TipD [General functi	84.31
KOG0302	440	consensus Ribosome Assembly protein [General funct	83.97
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	83.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	83.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	83.22
KOG0973	942	consensus Histone transcription regulator HIRA, WD	83.19
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	82.97
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.81
KOG0643	327	consensus Translation initiation factor 3, subunit	81.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	81.66
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	81.48
KOG0269	839	consensus WD40 repeat-containing protein [Function	81.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	81.01
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	80.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	80.25
KOG0301	745	consensus Phospholipase A2-activating protein (con	80.18

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=100.00  E-value=4e-57  Score=457.09  Aligned_cols=430  Identities=26%  Similarity=0.312  Sum_probs=347.7

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C---ceeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T---HRFIDRDPELFSILLSLLRTGNLPSKAKAFDIE   90 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~---~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~   90 (466)
                      .+.++|+|||||++|+|+++||+.+.+||||.+|+++      +   .+||||||++|..||||||||+|++ +..+..+
T Consensus         8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~-~g~~~~~   86 (465)
T KOG2714|consen    8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA-SGVFPER   86 (465)
T ss_pred             CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC-ccCchhh
Confidence            3468999999999999999999996559999999974      2   2899999999999999999999998 5567778


Q ss_pred             HHHHhhccccchhhHHhhcCCCCCCcccccccccccCCCCCCCCCcee-eecCCcEEEEcCCceeeEecCCCCCCCcccc
Q 012294           91 DLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIA-TTNYGTLHVSHGSKITSFDWSMRKKSTILTH  169 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~~~~~~~p~~~~~~~l~~va~l~~~~R~~~~a~~-a~~~g~lyva~GG~ve~YDW~~a~m~~~R~~  169 (466)
                      +|.+||.||||.++++.+.+.+.+|+++++....++.+.++....++. +.++..|++|||+.+.+|||++....+.+++
T Consensus        87 llhdEA~fYGl~~llrrl~~~~~~F~Gf~~~~s~~~~~~~~g~g~ai~~~~p~~~l~~AHg~~va~~dw~l~~~~tv~~~  166 (465)
T KOG2714|consen   87 LLHDEAMFYGLTPLLRRLTLCEELFDGFDLSLSRSVTGNAPGSGSAIRSAGPDVGLIVAHGIVVAYFDWSLEYRSTVNTG  166 (465)
T ss_pred             hhhhhhhhcCcHHHHHHhhcCcccccccccccchhhccCCCCCCccccccCCCceEEEecccEEEEEEEEEEeecccccC
Confidence            888899999999999977666667999998888877767777777776 5678899999999999999999778888999


Q ss_pred             ceeeeeecccCCcEEEEecccCCCceeccc-eeeeeCCCCceeecCCCCCceeEEEEECC---eEEEEecC--CCcCCCe
Q 012294          170 FTAVDSLLALSPGVAAAGATDFSGLQVLDL-ENGYVKETLNWENVTRSSSTVQAIGSSDK---HLFVSFES--GRRNSNS  243 (466)
Q Consensus       170 ~~~v~sl~~l~~~lYaiGG~~~~g~~~l~s-vE~ydp~t~~W~~va~Mr~~~~Ava~l~~---~IYaGg~~--g~~~l~s  243 (466)
                      +..+.++..++..+.++|.++..|.+.... +-..--.+..|+.+..-+....++..++.   .+|.-|.+  .......
T Consensus       167 ~q~V~s~~~id~~~~~ia~~~k~g~~~~~~~~~~s~~~~l~W~~q~~~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~  246 (465)
T KOG2714|consen  167 YQLVFSSPRIDSGIEAIAANSKVGLGDAGLLVAGSSSGSLLWKIQEEGSNTVKGVFSLAVSVDPLFFIGTQLVALSSVGK  246 (465)
T ss_pred             hhhhhccccccchhheeeecccccccccccccceeecceeeEeeccCCCcceEEEEeecccccchhhhhhhhhhcccccc
Confidence            999999999999999999876655543221 22333344789988766333333444443   34442221  1122345


Q ss_pred             eEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcc
Q 012294          244 IMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVD  321 (466)
Q Consensus       244 VE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d  321 (466)
                      |.+|++.|     +..+...+.++.|++.++.||+|+...++|.+++-+-...+.+++|..||+|+.+  .+|+.++.++
T Consensus       247 Igvw~~~t-----~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~~gt  321 (465)
T KOG2714|consen  247 IGVWHAVT-----QQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIAYGT  321 (465)
T ss_pred             ccccchhh-----hceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEecCCc
Confidence            55555555     4233333488999999999999999999999999998888999999999999999  7788888888


Q ss_pred             cccceeeec--------CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          322 CFSDVTVSD--------NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       322 ~~~~~~v~~--------~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      ++.++.|.+        .-...++.+++.+.|.++|+|+.+ .++|+++..++|.|..|.++  +..++||..+.....+
T Consensus       322 ~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~~idv~~~~-~~~~~~~~tr~rGm~s~~pg--~~~~~s~k~l~Le~~~  398 (465)
T KOG2714|consen  322 SSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLGLIDVCSDG-GHVRVWNSTRFRGMISTQPG--STPEASFKKLALEEGD  398 (465)
T ss_pred             cccceEeeeccccccCCCCeEEEEEEecCCCcceeehhhhC-CcceEEeecccccccccCCC--CCcccccceeeehhcc
Confidence            888776666        334456788899999999999988 79999999999999975554  4899999999999999


Q ss_pred             CeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCCCC
Q 012294          394 GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF  466 (466)
Q Consensus       394 ~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~~~  466 (466)
                      +..++|++.    +.    +...++-=++||++|+.++.+|+|+++++||||||++|+++++|+|||+++.++
T Consensus       399 ~~~s~~~gN----d~----~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~~~g  463 (465)
T KOG2714|consen  399 EFSSMSSGN----DS----GPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLECEG  463 (465)
T ss_pred             ccceeeecc----cc----cccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccCceeEEEecCCCC
Confidence            999999997    22    233333336999999999999999999999999999999999999999998764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1e-48  Score=424.44  Aligned_cols=332  Identities=20%  Similarity=0.268  Sum_probs=282.6

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------Cc-eeEcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI   93 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll   93 (466)
                      --+|+|.|+++.|.+||.+|+++  ++||++||++       +. .+.+.||+.++.||+|+|||++.+.  +.++++|+
T Consensus        36 lcDv~L~v~~~~~~aHR~VLAa~--S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~--~~nVq~ll  111 (571)
T KOG4441|consen   36 LCDVTLLVGDREFPAHRVVLAAC--SPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEIS--EDNVQELL  111 (571)
T ss_pred             CceEEEEECCeeechHHHHHHhc--cHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEec--hHhHHHHH
Confidence            35899999999999999999984  5599999996       12 4889999999999999999999986  68999999


Q ss_pred             HhhccccchhhHHhh------cCCCCCCcc--------------------------------------------------
Q 012294           94 EESKFYNIESLLINS------QSNPSQFDA--------------------------------------------------  117 (466)
Q Consensus        94 ~EA~f~~l~~l~~~~------~~~p~~~~~--------------------------------------------------  117 (466)
                      +.|.+|||..++++|      +++|+||++                                                  
T Consensus       112 ~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~  191 (571)
T KOG4441|consen  112 EAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDD  191 (571)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccC
Confidence            999999999999998      455655440                                                  


Q ss_pred             -----------------------------------------------------------------cccccccccCCCCCC
Q 012294          118 -----------------------------------------------------------------FSLEKSLILPLNGRD  132 (466)
Q Consensus       118 -----------------------------------------------------------------~~l~~va~l~~~~R~  132 (466)
                                                                                       .++.....++ ..+.
T Consensus       192 l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~  270 (571)
T KOG4441|consen  192 LNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLP-QRRP  270 (571)
T ss_pred             CCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCc
Confidence                                                                             0111122233 3332


Q ss_pred             CCCceeeec----CCcEEEEcCCc---------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCC-
Q 012294          133 SPSAIATTN----YGTLHVSHGSK---------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFS-  192 (466)
Q Consensus       133 ~~~a~~a~~----~g~lyva~GG~---------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-  192 (466)
                      ......+.+    .+.||++ ||.         +++||     |.. ++|+.+|.++++++    +++.|||+||  ++ 
T Consensus       271 ~~~~~~t~~r~~~~~~l~~v-GG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~----~~~~lYv~GG--~~~  343 (571)
T KOG4441|consen  271 VMQSPRTRPRRSVSGKLVAV-GGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV----LNGKLYVVGG--YDS  343 (571)
T ss_pred             cccCCCcccCcCCCCeEEEE-CCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE----ECCEEEEEcc--ccC
Confidence            222223333    4788854 553         47899     999 99999999998888    9999999999  88 


Q ss_pred             CceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCc
Q 012294          193 GLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDI  268 (466)
Q Consensus       193 g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~  268 (466)
                      |...++++|+|||.+|+|+.+++|   |..++ +++++|+||| ||.+|...+++||+|||.|               |.
T Consensus       344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l~g~iYavGG~dg~~~l~svE~YDp~~---------------~~  407 (571)
T KOG4441|consen  344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAVLDGKLYAVGGFDGEKSLNSVECYDPVT---------------NK  407 (571)
T ss_pred             CCcccceEEEecCCCCceeccCCccCccccce-eEEECCEEEEEeccccccccccEEEecCCC---------------Cc
Confidence            899999999999999999999999   77776 9999999999 9998988899999999999               88


Q ss_pred             eeecCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEee
Q 012294          269 ESAIPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINS  342 (466)
Q Consensus       269 w~~~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~  342 (466)
                      |+.+++|...     ..+++|+||++||+++....+.+||+|||++|+  |+..++ ..+|..+++...+..||+||+++
T Consensus       408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVLNGKIYVVGGFD  485 (571)
T ss_pred             ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEECCEEEEECCcc
Confidence            9999988553     456999999999999988778899999999999  999999 78899999999999999999999


Q ss_pred             CceeEeeccccCC----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          343 GEVSYMDLRKLGD----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       343 g~l~~~dlr~~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      |+   ..|+++|+    +|.|..+++    |+.  +| +++.+++.+|+||+.-|
T Consensus       486 ~~---~~~~~VE~ydp~~~~W~~v~~----m~~--~r-s~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  486 GT---SALSSVERYDPETNQWTMVAP----MTS--PR-SAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             CC---CccceEEEEcCCCCceeEccc----Ccc--cc-ccccEEEECCEEEEEec
Confidence            96   78888886    899999998    884  67 99999999999999977

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-40  Score=355.98  Aligned_cols=304  Identities=15%  Similarity=0.181  Sum_probs=244.0

Q ss_pred             CCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCC-----C---ce-eEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294           22 SNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADS-----T---HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIED   91 (466)
Q Consensus        22 ~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~-----~---~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~   91 (466)
                      --+|+|.|+ |+.|.+||.+|++  .++||++||++     +   ++ +.+.+++.|+.||+|+|||+|.    ..++++
T Consensus        25 l~DV~L~v~~~~~f~~Hr~vLaa--~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~----~~nv~~   98 (557)
T PHA02713         25 LCDVIITIGDGEEIKAHKTILAA--GSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS----SMNVID   98 (557)
T ss_pred             CCCEEEEeCCCCEEeehHHHHhh--cCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCCC----HHHHHH
Confidence            458999998 8999999999998  45699999985     1   23 7789999999999999999853    368999


Q ss_pred             HHHhhccccchhhHHhh------cCCCCCCcc------------------------------------------------
Q 012294           92 LIEESKFYNIESLLINS------QSNPSQFDA------------------------------------------------  117 (466)
Q Consensus        92 Ll~EA~f~~l~~l~~~~------~~~p~~~~~------------------------------------------------  117 (466)
                      ||..|.+|||+.++++|      +++++||.+                                                
T Consensus        99 ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~  178 (557)
T PHA02713         99 VLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIIST  178 (557)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhcc
Confidence            99999999999999988      233333220                                                


Q ss_pred             ---------------------cc----------c----------------------------------------------
Q 012294          118 ---------------------FS----------L----------------------------------------------  120 (466)
Q Consensus       118 ---------------------~~----------l----------------------------------------------  120 (466)
                                           .+          +                                              
T Consensus       179 d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~~  258 (557)
T PHA02713        179 NDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQL  258 (557)
T ss_pred             ccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcce
Confidence                                 00          0                                              


Q ss_pred             --------------------------ccccccCCCCCCCCCceeeecCCcEEEEcCC--------ceeeEe-----cCC-
Q 012294          121 --------------------------EKSLILPLNGRDSPSAIATTNYGTLHVSHGS--------KITSFD-----WSM-  160 (466)
Q Consensus       121 --------------------------~~va~l~~~~R~~~~a~~a~~~g~lyva~GG--------~ve~YD-----W~~-  160 (466)
                                                ..+++|+ .+|..++  ++++++.||+++|-        .+++||     |.. 
T Consensus       259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp-~~r~~~~--~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~  335 (557)
T PHA02713        259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIP-NHIINYA--SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL  335 (557)
T ss_pred             EEEEecCccccCCCCEEEEeCCCCeEEECCCCC-ccccceE--EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC
Confidence                                      0011233 3333344  57789999976551        157899     999 


Q ss_pred             CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecC
Q 012294          161 RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFES  236 (466)
Q Consensus       161 a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~  236 (466)
                      ++|+.+|..+++++    ++++|||+||  .++...++++|+|||.+++|+.+++|   |+.++ +++++|+||+ ||.+
T Consensus       336 ~~m~~~R~~~~~~~----~~g~IYviGG--~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~-~~~~~g~IYviGG~~  408 (557)
T PHA02713        336 PPMIKNRCRFSLAV----IDDTIYAIGG--QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYG-MCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCCcchhhceeEEE----ECCEEEEECC--cCCCCCCceEEEEECCCCeEEECCCCCccccccc-EEEECCEEEEEeCCC
Confidence            99999999998887    9999999999  77777789999999999999999999   66665 7899999999 8865


Q ss_pred             CC------------------cCCCeeEEEecCCCCccccccccccccCCceeecCcceee-----EEeeCCeEEEEeecC
Q 012294          237 GR------------------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR-----WVSSYNLLLASGSHS  293 (466)
Q Consensus       237 g~------------------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-----~~~~~~~Lyv~Gg~~  293 (466)
                      +.                  ..+++||+|||++               ++|+.+++|...     .+.++|.|||+||++
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t---------------d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~  473 (557)
T PHA02713        409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN---------------NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK  473 (557)
T ss_pred             cccccccccccccccccccccccceEEEECCCC---------------CeEeecCCCCcccccCcEEEECCEEEEEeCCC
Confidence            32                  1268999999999               778888888543     456899999999988


Q ss_pred             CCCcccceEEEEeCCC-CeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC----CCCeEEecc
Q 012294          294 DISKVTGNIKFWDIRS-GNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD----SSEWICLGD  364 (466)
Q Consensus       294 g~~~~~~sVe~yDprt-~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~  364 (466)
                      +......+||+|||++ |+  |+...+ ..+|..+++...++.||++|+++|.      .++|+    +|+|..+++
T Consensus       474 ~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~------~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        474 DEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILHDNTIMMLHCYESY------MLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             CCCccceeEEEecCCCCCC--eeEccccCcccccceeEEECCEEEEEeeecce------eehhhcCcccccccchhh
Confidence            7554556799999999 89  999887 4577888999999999999999994      35665    899999998

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=6.4e-36  Score=319.13  Aligned_cols=295  Identities=12%  Similarity=0.086  Sum_probs=224.3

Q ss_pred             CeEEEEECCeEEEEeHHHhhccCCCCccccccCC------Cce-e--EcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294           23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------THR-F--IDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI   93 (466)
Q Consensus        23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~~~-f--iDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll   93 (466)
                      .+|. -|.|+.|++||.+|++  .++||++||++      +.+ .  +|.|++.|+.||+|+|||+|.++  ..|+++|+
T Consensus        23 ~~~~-~~~~~~~~~HR~VLAa--~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it--~~nV~~ll   97 (480)
T PHA02790         23 KTII-EAIGGNIIVNSTILKK--LSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYID--SHNVVNLL   97 (480)
T ss_pred             ceEE-EEcCcEEeeehhhhhh--cCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEe--cccHHHHH
Confidence            3554 4556699999999998  45699999986      223 3  38999999999999999999996  57899999


Q ss_pred             HhhccccchhhHHhh------cCCCCCCcc--------------------------------------------------
Q 012294           94 EESKFYNIESLLINS------QSNPSQFDA--------------------------------------------------  117 (466)
Q Consensus        94 ~EA~f~~l~~l~~~~------~~~p~~~~~--------------------------------------------------  117 (466)
                      +.|.+|||+.++++|      +++++||++                                                  
T Consensus        98 ~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L  177 (480)
T PHA02790         98 RASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDEL  177 (480)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccC
Confidence            999999999999998      344444330                                                  


Q ss_pred             --------------------c---c-cc---c-ccc--c--------------------CCCCCC---------------
Q 012294          118 --------------------F---S-LE---K-SLI--L--------------------PLNGRD---------------  132 (466)
Q Consensus       118 --------------------~---~-l~---~-va~--l--------------------~~~~R~---------------  132 (466)
                                          .   . ++   . +..  |                    ...+|.               
T Consensus       178 ~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  257 (480)
T PHA02790        178 NVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQ  257 (480)
T ss_pred             CCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccccccCCcccc
Confidence                                0   0 00   0 000  0                    000111               


Q ss_pred             ----CCCceeeecCCcEEEEcCC-------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCce
Q 012294          133 ----SPSAIATTNYGTLHVSHGS-------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQ  195 (466)
Q Consensus       133 ----~~~a~~a~~~g~lyva~GG-------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~  195 (466)
                          ...+.++.+++.||+++|.       .+++||     |.. ++|+.+|..+++++    ++++|||+||  .++  
T Consensus       258 ~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~----~~~~iYviGG--~~~--  329 (480)
T PHA02790        258 IIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP----ANNKLYVVGG--LPN--  329 (480)
T ss_pred             eeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE----ECCEEEEECC--cCC--
Confidence                0001123478999966441       257899     999 99999999988877    9999999999  653  


Q ss_pred             eccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceee
Q 012294          196 VLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA  271 (466)
Q Consensus       196 ~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~  271 (466)
                       .+++|+|||.+|+|+.+++|   |..++ +++++|+||| ||.++.  .+++|+|||.+               +.|+.
T Consensus       330 -~~sve~ydp~~n~W~~~~~l~~~r~~~~-~~~~~g~IYviGG~~~~--~~~ve~ydp~~---------------~~W~~  390 (480)
T PHA02790        330 -PTSVERWFHGDAAWVNMPSLLKPRCNPA-VASINNVIYVIGGHSET--DTTTEYLLPNH---------------DQWQF  390 (480)
T ss_pred             -CCceEEEECCCCeEEECCCCCCCCcccE-EEEECCEEEEecCcCCC--CccEEEEeCCC---------------CEEEe
Confidence             26899999999999999999   65555 7999999999 887543  57899999999               77888


Q ss_pred             cCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCce
Q 012294          272 IPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEV  345 (466)
Q Consensus       272 ~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l  345 (466)
                      +++|...     .+.++|.|||+||         .+|+|||++|+  |+..++ ..++..+++...++.||++||.++. 
T Consensus       391 ~~~m~~~r~~~~~~~~~~~IYv~GG---------~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~-  458 (480)
T PHA02790        391 GPSTYYPHYKSCALVFGRRLFLVGR---------NAEFYCESSNT--WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG-  458 (480)
T ss_pred             CCCCCCccccceEEEECCEEEEECC---------ceEEecCCCCc--EeEcCCCCCCccccEEEEECCEEEEECCcCCC-
Confidence            8887543     3468999999997         38999999999  999877 4467888889999999999998754 


Q ss_pred             eEeeccccCC----CCCeEEec
Q 012294          346 SYMDLRKLGD----SSEWICLG  363 (466)
Q Consensus       346 ~~~dlr~~~~----~~~W~~~~  363 (466)
                        ..+.+++.    +|.|..|-
T Consensus       459 --~~~~~ve~Yd~~~~~W~~~~  478 (480)
T PHA02790        459 --SYIDTIEVYNNRTYSWNIWD  478 (480)
T ss_pred             --cccceEEEEECCCCeEEecC
Confidence              22455554    78888664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=318.53  Aligned_cols=213  Identities=20%  Similarity=0.273  Sum_probs=188.8

Q ss_pred             ccccccCCCCCCCCCceeeecCCcEEEEcC---C-----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEE
Q 012294          121 EKSLILPLNGRDSPSAIATTNYGTLHVSHG---S-----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAA  186 (466)
Q Consensus       121 ~~va~l~~~~R~~~~a~~a~~~g~lyva~G---G-----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYai  186 (466)
                      ..+++|+ .+|..++  +++++|.||+++|   |     .+++||     |+. ++|+++|..+++++    ++|.|||+
T Consensus       314 ~~~a~m~-~~r~~~~--~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYav  386 (571)
T KOG4441|consen  314 SSLAPMP-SPRCRVG--VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAV  386 (571)
T ss_pred             eecCCCC-ccccccc--EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEE
Confidence            4567888 8899888  8999999996654   1     257899     999 99999999999998    99999999


Q ss_pred             ecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCc-CCCeeEEEecCCCCcccccccc
Q 012294          187 GATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRR-NSNSIMVYDINSLKPVNEIGQN  261 (466)
Q Consensus       187 GG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~-~l~sVE~YDp~t~~~~~~~~~~  261 (466)
                      ||  ++|...++++|+|||.+|+|+.+++|   |.+++ +|+++++||+ ||.++.. .+++||+|||.|          
T Consensus       387 GG--~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t----------  453 (571)
T KOG4441|consen  387 GG--FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPET----------  453 (571)
T ss_pred             ec--cccccccccEEEecCCCCcccccCCCCcceeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCC----------
Confidence            99  99999999999999999999999999   55555 9999999999 8876766 799999999999          


Q ss_pred             ccccCCceeecCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCce
Q 012294          262 EIYGTDIESAIPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAI  335 (466)
Q Consensus       262 ~~~~~~~w~~~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i  335 (466)
                           |.|+.+++|+..     .+.+++.|||+||++|.+ ...+||+|||++|+  |+...+ ..+++.+++...++.|
T Consensus       454 -----~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~~~~l  525 (571)
T KOG4441|consen  454 -----NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-ALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVLGGKL  525 (571)
T ss_pred             -----CceeecCCcccccccceEEEECCEEEEECCccCCC-ccceEEEEcCCCCc--eeEcccCccccccccEEEECCEE
Confidence                 778888888553     557999999999999954 55689999999999  999876 6688899999999999


Q ss_pred             EEEEEeeCceeEeeccccCC----CCCeEEecc
Q 012294          336 YKVGINSGEVSYMDLRKLGD----SSEWICLGD  364 (466)
Q Consensus       336 ~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~  364 (466)
                      |+||+.+|.   .+|.+++.    .|.|....+
T Consensus       526 y~vGG~~~~---~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  526 YAVGGFDGN---NNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EEEecccCc---cccceeEEcCCCCCceeeCCC
Confidence            999999999   88888886    899999988

>PHA03098 kelch-like protein; Provisional

Probab=99.98  E-value=5e-31  Score=283.97  Aligned_cols=331  Identities=14%  Similarity=0.136  Sum_probs=232.2

Q ss_pred             CeEEEEE--CCeEEEEeHHHhhccCCCCccccccCC----Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHh
Q 012294           23 NIVTIDV--GGQIFQTTKQTLALAGPKSLLSKLADS----THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEE   95 (466)
Q Consensus        23 ~~V~LnV--GG~~F~t~~~tL~~~~p~s~f~~mf~~----~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~E   95 (466)
                      -+|+|.|  +|+.|.+||.+|++  .++||++||++    +.+ +.+ +++.|+.||+|+|||++.+.  ..++++|+..
T Consensus        10 ~Dv~l~~~~~~~~~~~Hk~vLaa--~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~--~~~~~~ll~~   84 (534)
T PHA03098         10 CDESIIIVNGGGIIKVHKIILSS--SSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINIT--SNNVKDILSI   84 (534)
T ss_pred             CCEEEEEEcCCEEEEeHHHHHHh--hhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEc--HHHHHHHHHH
Confidence            4666666  99999999999998  45699999987    234 667 99999999999999999985  4679999999


Q ss_pred             hccccchhhHHhh------cCCCCCCc------------------------------------c----------------
Q 012294           96 SKFYNIESLLINS------QSNPSQFD------------------------------------A----------------  117 (466)
Q Consensus        96 A~f~~l~~l~~~~------~~~p~~~~------------------------------------~----------------  117 (466)
                      |.+|||+.|.+.|      .+++.||.                                    .                
T Consensus        85 A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~  164 (534)
T PHA03098         85 ANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLN  164 (534)
T ss_pred             HHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcC
Confidence            9999999999888      22332211                                    0                


Q ss_pred             --------------------cc-------ccccc----------------------ccCCCCCCCC-----------Cce
Q 012294          118 --------------------FS-------LEKSL----------------------ILPLNGRDSP-----------SAI  137 (466)
Q Consensus       118 --------------------~~-------l~~va----------------------~l~~~~R~~~-----------~a~  137 (466)
                                          .+       ++.+.                      .+....++..           ...
T Consensus       165 v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (534)
T PHA03098        165 VSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILP  244 (534)
T ss_pred             cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCc
Confidence                                00       00000                      0000000000           000


Q ss_pred             -eeecCCcEEEEcCC-----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCc-eeccceeeee
Q 012294          138 -ATTNYGTLHVSHGS-----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGL-QVLDLENGYV  204 (466)
Q Consensus       138 -~a~~~g~lyva~GG-----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~-~~l~svE~yd  204 (466)
                       .-.....+++++|+     ...+|+     |.. ++++. +..+++++    +++.||++||  .++. ...+.+.+||
T Consensus       245 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~lyv~GG--~~~~~~~~~~v~~yd  317 (534)
T PHA03098        245 RSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFGSVV----LNNVIYFIGG--MNKNNLSVNSVVSYD  317 (534)
T ss_pred             CccCCCcceEeecccchhhceeeecchhhhhcccccCccc-cccceEEE----ECCEEEEECC--CcCCCCeeccEEEEe
Confidence             00112345544443     234566     544 43332 34456666    9999999999  5543 3467899999


Q ss_pred             CCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee--
Q 012294          205 KETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR--  278 (466)
Q Consensus       205 p~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~--  278 (466)
                      |.+++|..+++|   |..++ +++++++||+ ||.++...++++|+|||.+               ++|+.+++|...  
T Consensus       318 ~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~---------------~~W~~~~~lp~~r~  381 (534)
T PHA03098        318 TKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSISLNTVESWKPGE---------------SKWREEPPLIFPRY  381 (534)
T ss_pred             CCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCEecceEEEEcCCC---------------CceeeCCCcCcCCc
Confidence            999999999999   66665 7899999999 9876555589999999999               668877766432  


Q ss_pred             ---EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc--------ee
Q 012294          279 ---WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE--------VS  346 (466)
Q Consensus       279 ---~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~--------l~  346 (466)
                         .+..+|.||++||.+.....+++||+|||.+++  |+..++ -.++...++...++.||.+|+.++.        ++
T Consensus       382 ~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  459 (534)
T PHA03098        382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE  459 (534)
T ss_pred             cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence               345899999999975544456789999999999  999876 3345555666778899999996543        22


Q ss_pred             EeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294          347 YMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       347 ~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                      .-|..    .+.|..+++    |..  +| .+..+++++|.||+..|.
T Consensus       460 ~yd~~----~~~W~~~~~----~~~--~r-~~~~~~~~~~~iyv~GG~  496 (534)
T PHA03098        460 SYNPV----TNKWTELSS----LNF--PR-INASLCIFNNKIYVVGGD  496 (534)
T ss_pred             EecCC----CCceeeCCC----CCc--cc-ccceEEEECCEEEEEcCC
Confidence            33322    688999987    663  56 677788899999998764

>PHA02713 hypothetical protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=259.82  Aligned_cols=208  Identities=12%  Similarity=0.144  Sum_probs=171.5

Q ss_pred             eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCC-CceeccceeeeeCCCCceeecCCC---CCceeE
Q 012294          153 ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFS-GLQVLDLENGYVKETLNWENVTRS---SSTVQA  222 (466)
Q Consensus       153 ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-g~~~l~svE~ydp~t~~W~~va~M---r~~~~A  222 (466)
                      +++||     |.. ++|+.+|..+++++    ++++||++||  .+ +...++++++|||.+++|..+++|   |+.++ 
T Consensus       274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~----l~~~IYviGG--~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-  346 (557)
T PHA02713        274 ILVYNINTMEYSVISTIPNHIINYASAI----VDNEIIIAGG--YNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-  346 (557)
T ss_pred             EEEEeCCCCeEEECCCCCccccceEEEE----ECCEEEEEcC--CCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-
Confidence            47899     998 99999999888877    9999999999  54 334578999999999999999999   66666 


Q ss_pred             EEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-----eEEeeCCeEEEEeecCCCC
Q 012294          223 IGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDIS  296 (466)
Q Consensus       223 va~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~  296 (466)
                      +++++|+||| ||.++...+++||+|||.+               +.|+.+++|..     +.+.++|.|||+||.++..
T Consensus       347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~---------------~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~  411 (557)
T PHA02713        347 LAVIDDTIYAIGGQNGTNVERTIECYTMGD---------------DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHI  411 (557)
T ss_pred             EEEECCEEEEECCcCCCCCCceEEEEECCC---------------CeEEECCCCCcccccccEEEECCEEEEEeCCCccc
Confidence            8999999999 8886665689999999999               77888887744     3456899999999987531


Q ss_pred             -----------------cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC---
Q 012294          297 -----------------KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD---  355 (466)
Q Consensus       297 -----------------~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~---  355 (466)
                                       ..+.+||+|||++|+  |+..++ ..++...++...++.||++|+.++.-.  .++++++   
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~--~~~~ve~Ydp  487 (557)
T PHA02713        412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN--VKTCIFRYNT  487 (557)
T ss_pred             ccccccccccccccccccccceEEEECCCCCe--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCc--cceeEEEecC
Confidence                             125689999999999  999888 456677788889999999999875421  1234454   


Q ss_pred             -C-CCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          356 -S-SEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       356 -~-~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                       + |.|..+++    |..  +| .++.+++++|.||+..|
T Consensus       488 ~~~~~W~~~~~----m~~--~r-~~~~~~~~~~~iyv~Gg  520 (557)
T PHA02713        488 NTYNGWELITT----TES--RL-SALHTILHDNTIMMLHC  520 (557)
T ss_pred             CCCCCeeEccc----cCc--cc-ccceeEEECCEEEEEee
Confidence             5 79999998    884  77 89999999999999977

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.92  E-value=1e-23  Score=215.27  Aligned_cols=237  Identities=13%  Similarity=0.086  Sum_probs=167.1

Q ss_pred             cccCCCCCCCCCceeeecCCcEEEEcCCc----eeeEe-------cCC-CCCC-CccccceeeeeecccCCcEEEEeccc
Q 012294          124 LILPLNGRDSPSAIATTNYGTLHVSHGSK----ITSFD-------WSM-RKKS-TILTHFTAVDSLLALSPGVAAAGATD  190 (466)
Q Consensus       124 a~l~~~~R~~~~a~~a~~~g~lyva~GG~----ve~YD-------W~~-a~m~-~~R~~~~~v~sl~~l~~~lYaiGG~~  190 (466)
                      ++|| .+|...+  +|++++.||++ ||.    ..+||       |.. ++|+ .+|..+++++    ++++||++||  
T Consensus         2 ~~lp-~~~~~~~--~~~~~~~vyv~-GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~----~~~~iYv~GG--   71 (346)
T TIGR03547         2 PDLP-VGFKNGT--GAIIGDKVYVG-LGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA----IDGKLYVFGG--   71 (346)
T ss_pred             CCCC-ccccCce--EEEECCEEEEE-ccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE----ECCEEEEEeC--
Confidence            3566 6777655  67889999966 553    45666       998 9998 5888887776    9999999999  


Q ss_pred             CCC------ceeccceeeeeCCCCceeecCC-C-C--CceeEEEEECCeEEE-EecCCCc--------------------
Q 012294          191 FSG------LQVLDLENGYVKETLNWENVTR-S-S--STVQAIGSSDKHLFV-SFESGRR--------------------  239 (466)
Q Consensus       191 ~~g------~~~l~svE~ydp~t~~W~~va~-M-r--~~~~Ava~l~~~IYa-Gg~~g~~--------------------  239 (466)
                      ...      ...++.+|+|||.+++|+.+++ | |  ..++++++++++||| ||.++..                    
T Consensus        72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (346)
T TIGR03547        72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK  151 (346)
T ss_pred             CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence            532      2357899999999999999974 4 3  334333478999999 8864320                    


Q ss_pred             --------------CCCeeEEEecCCCCccccccccccccCCceeecCccee------eEEeeCCeEEEEeecCCCCccc
Q 012294          240 --------------NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       240 --------------~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                                    .+++||+|||.+               +.|+.+++|..      ..+..+++||++||.+......
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~YDp~t---------------~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~  216 (346)
T TIGR03547       152 LIAAYFSQPPEDYFWNKNVLSYDPST---------------NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRT  216 (346)
T ss_pred             hHHHHhCCChhHcCccceEEEEECCC---------------CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccc
Confidence                          148999999999               67888776632      2345799999999976543223


Q ss_pred             ceEEEEeC--CCCeeeeEEcCCc-ccc-------cceeeecCCCceEEEEEee----------CceeEe----eccccCC
Q 012294          300 GNIKFWDI--RSGNVAWEVKDEV-DCF-------SDVTVSDNLSAIYKVGINS----------GEVSYM----DLRKLGD  355 (466)
Q Consensus       300 ~sVe~yDp--rt~~~vW~~~~~~-d~~-------~~~~v~~~~~~i~~v~~~~----------g~l~~~----dlr~~~~  355 (466)
                      ..+++||+  .+++  |+...+. .++       +.+.+...++.||.+|+.+          |.+++.    .+.+.+.
T Consensus       217 ~~~~~y~~~~~~~~--W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  294 (346)
T TIGR03547       217 AEVKQYLFTGGKLE--WNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV  294 (346)
T ss_pred             hheEEEEecCCCce--eeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence            45666765  5567  9877662 221       2333556788999999964          222221    1123332


Q ss_pred             ----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294          356 ----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       356 ----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                          .|.|..+.+    |..  ++ .+..+++.+|+||+.-|.
T Consensus       295 yd~~~~~W~~~~~----lp~--~~-~~~~~~~~~~~iyv~GG~  330 (346)
T TIGR03547       295 YALDNGKWSKVGK----LPQ--GL-AYGVSVSWNNGVLLIGGE  330 (346)
T ss_pred             EEecCCcccccCC----CCC--Cc-eeeEEEEcCCEEEEEecc
Confidence                789999987    763  56 667788899999999873

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=99.91  E-value=5.6e-24  Score=227.41  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             cccccCCCCCCCCCceeeecCCcEEEEcCC----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccC
Q 012294          122 KSLILPLNGRDSPSAIATTNYGTLHVSHGS----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDF  191 (466)
Q Consensus       122 ~va~l~~~~R~~~~a~~a~~~g~lyva~GG----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~  191 (466)
                      .+++|+ .+|..++  +++++|.||+++|.    .+++||     |.. ++|+.+|..+++++    ++++|||+||  .
T Consensus       301 ~~~~m~-~~r~~~~--~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----~~g~IYviGG--~  371 (480)
T PHA02790        301 PIPPMN-SPRLYAS--GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----INNVIYVIGG--H  371 (480)
T ss_pred             ECCCCC-chhhcce--EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE----ECCEEEEecC--c
Confidence            456787 7888877  78899999966441    368898     999 99999999998887    9999999999  6


Q ss_pred             CCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCC
Q 012294          192 SGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTD  267 (466)
Q Consensus       192 ~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~  267 (466)
                      ++.  .+++|+|||.+++|+.+++|   |..++ +++++|+||+ ||        .+|+|||++               |
T Consensus       372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~-~~~~~~~IYv~GG--------~~e~ydp~~---------------~  425 (480)
T PHA02790        372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSC-ALVFGRRLFLVGR--------NAEFYCESS---------------N  425 (480)
T ss_pred             CCC--CccEEEEeCCCCEEEeCCCCCCccccce-EEEECCEEEEECC--------ceEEecCCC---------------C
Confidence            543  47899999999999999999   55655 7899999999 75        379999999               7


Q ss_pred             ceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          268 IESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       268 ~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      .|+.+++|+.     +.+.++|.|||+||+++.. ...+||+|||++|+  |+.-+
T Consensus       426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~~~--W~~~~  478 (480)
T PHA02790        426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRTYS--WNIWD  478 (480)
T ss_pred             cEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-ccceEEEEECCCCe--EEecC
Confidence            7888887754     3456999999999988654 46789999999999  98743

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.91  E-value=1e-22  Score=206.39  Aligned_cols=226  Identities=15%  Similarity=0.160  Sum_probs=166.3

Q ss_pred             ceeeecCCcEEEEcCCc---------------eeeE---e------cCC-CCCCCccccceeeeeecccCCcEEEEeccc
Q 012294          136 AIATTNYGTLHVSHGSK---------------ITSF---D------WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATD  190 (466)
Q Consensus       136 a~~a~~~g~lyva~GG~---------------ve~Y---D------W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~  190 (466)
                      +.++++++.||+++|-.               .+.|   |      |.. ++|+.+|..++.++    ++++||++||  
T Consensus         7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~----~~~~lyviGG--   80 (323)
T TIGR03548         7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVS----VENGIYYIGG--   80 (323)
T ss_pred             EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEE----ECCEEEEEcC--
Confidence            34788999999775510               1234   2      888 99999998877776    8999999999  


Q ss_pred             CCCceeccceeeeeCCCCce----eecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccc
Q 012294          191 FSGLQVLDLENGYVKETLNW----ENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNE  262 (466)
Q Consensus       191 ~~g~~~l~svE~ydp~t~~W----~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~  262 (466)
                      .++...++.+++||+.+++|    +.+++|   |..++ +++++++||+ ||......++++++|||.+           
T Consensus        81 ~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~-~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~-----------  148 (323)
T TIGR03548        81 SNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS-ACYKDGTLYVGGGNRNGKPSNKSYLFNLET-----------  148 (323)
T ss_pred             CCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce-EEEECCEEEEEeCcCCCccCceEEEEcCCC-----------
Confidence            77767789999999999998    778888   55555 7889999999 7753333489999999999           


Q ss_pred             cccCCceeecCccee------eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc----ccc---cceeee
Q 012294          263 IYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV----DCF---SDVTVS  329 (466)
Q Consensus       263 ~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~----d~~---~~~~v~  329 (466)
                          +.|+.+++|..      ..+..++.|||.||+++..  ...+++|||++++  |+..++.    .++   ...++.
T Consensus       149 ----~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~  220 (323)
T TIGR03548       149 ----QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQ--WQKVADPTTDSEPISLLGAASIK  220 (323)
T ss_pred             ----CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCe--eEECCCCCCCCCceeccceeEEE
Confidence                66777765421      2346899999999987643  3468999999999  9987652    122   233455


Q ss_pred             cCCCceEEEEEeeCceeE---ee--------------------------ccccCC----CCCeEEeccCCcccccccccc
Q 012294          330 DNLSAIYKVGINSGEVSY---MD--------------------------LRKLGD----SSEWICLGDGRKMVNGKRKEG  376 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~---~d--------------------------lr~~~~----~~~W~~~~~~~~~m~~~~~~~  376 (466)
                      ..++.||.+|+.++..+.   .+                          .++++.    .|.|..+++    |.. .+| 
T Consensus       221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~p~-~~r-  294 (323)
T TIGR03548       221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN----SPF-FAR-  294 (323)
T ss_pred             ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc----ccc-ccc-
Confidence            567899999998753210   00                          122332    688999986    432 255 


Q ss_pred             ceeEEEEECCEEEEEeC
Q 012294          377 FGCKIECHANQVFCGKG  393 (466)
Q Consensus       377 ~~~~~~~~~~~lf~~~~  393 (466)
                      ++..++.++++||+.-|
T Consensus       295 ~~~~~~~~~~~iyv~GG  311 (323)
T TIGR03548       295 CGAALLLTGNNIFSING  311 (323)
T ss_pred             CchheEEECCEEEEEec
Confidence            78889999999999987

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.90  E-value=1.6e-22  Score=205.02  Aligned_cols=190  Identities=11%  Similarity=0.059  Sum_probs=146.0

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCCc--------eeeEe-----c----CC-CCCCCccccceeeeeecccCCcEE
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK--------ITSFD-----W----SM-RKKSTILTHFTAVDSLLALSPGVA  184 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~--------ve~YD-----W----~~-a~m~~~R~~~~~v~sl~~l~~~lY  184 (466)
                      +++|+ .+|..++  .+++++.||++ ||.        +++||     |    .. ++|+.+|..+++++    ++++||
T Consensus        56 ~~~lp-~~r~~~~--~~~~~~~lyvi-GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~----~~~~iY  127 (323)
T TIGR03548        56 DGQLP-YEAAYGA--SVSVENGIYYI-GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY----KDGTLY  127 (323)
T ss_pred             cccCC-ccccceE--EEEECCEEEEE-cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE----ECCEEE
Confidence            45677 7777666  57789999965 552        46787     7    55 88999999888776    999999


Q ss_pred             EEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccc
Q 012294          185 AAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       185 aiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      ++||  ......++.+++|||.+++|+.+++|    |..+. +++++++||+ ||.++.. .+.+++|||++        
T Consensus       128 v~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~-~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~--------  195 (323)
T TIGR03548       128 VGGG--NRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV-CVKLQNELYVFGGGSNIA-YTDGYKYSPKK--------  195 (323)
T ss_pred             EEeC--cCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce-EEEECCEEEEEcCCCCcc-ccceEEEecCC--------
Confidence            9999  54445578999999999999999987    44444 6789999999 8875543 56789999999        


Q ss_pred             ccccccCCceeecCccee-----e------EEeeCCeEEEEeecCCCC-------------------------------c
Q 012294          260 QNEIYGTDIESAIPATKL-----R------WVSSYNLLLASGSHSDIS-------------------------------K  297 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k~-----~------~~~~~~~Lyv~Gg~~g~~-------------------------------~  297 (466)
                             ++|+.+++|..     .      ....++.||++||.++..                               .
T Consensus       196 -------~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (323)
T TIGR03548       196 -------NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYN  268 (323)
T ss_pred             -------CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccC
Confidence                   66777776521     1      123479999999987521                               1


Q ss_pred             ccceEEEEeCCCCeeeeEEcCCc--ccccceeeecCCCceEEEEEe
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDEV--DCFSDVTVSDNLSAIYKVGIN  341 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~v~~~~~~i~~v~~~  341 (466)
                      +.++|++|||.+++  |+..++.  ..++.+++..-++.||.+|+.
T Consensus       269 ~~~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       269 WNRKILIYNVRTGK--WKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             cCceEEEEECCCCe--eeEcccccccccCchheEEECCEEEEEecc
Confidence            23579999999999  9987753  367777778888889988884

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.88  E-value=4.4e-21  Score=196.01  Aligned_cols=235  Identities=16%  Similarity=0.149  Sum_probs=165.1

Q ss_pred             cCCCCCCCCCceeeecCCcEEEEcCC---------ceeeEe-----cCC-CCCC-Cccc---cceeeeeecccCCcEEEE
Q 012294          126 LPLNGRDSPSAIATTNYGTLHVSHGS---------KITSFD-----WSM-RKKS-TILT---HFTAVDSLLALSPGVAAA  186 (466)
Q Consensus       126 l~~~~R~~~~a~~a~~~g~lyva~GG---------~ve~YD-----W~~-a~m~-~~R~---~~~~v~sl~~l~~~lYai  186 (466)
                      +| .+|..++  +++.++.||+++|.         .+.+||     |.. +++. .+|.   .+.+++    ++++||++
T Consensus        19 ~P-~pR~~h~--~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~----~~~~iyv~   91 (341)
T PLN02153         19 GP-GPRCSHG--IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA----VGTKLYIF   91 (341)
T ss_pred             CC-CCCCcce--EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE----ECCEEEEE
Confidence            45 7788888  78889999966542         146788     998 6664 3443   444554    89999999


Q ss_pred             ecccCCCceeccceeeeeCCCCceeecCCC--------CCceeEEEEECCeEEE-EecCCC------cCCCeeEEEecCC
Q 012294          187 GATDFSGLQVLDLENGYVKETLNWENVTRS--------SSTVQAIGSSDKHLFV-SFESGR------RNSNSIMVYDINS  251 (466)
Q Consensus       187 GG~~~~g~~~l~svE~ydp~t~~W~~va~M--------r~~~~Ava~l~~~IYa-Gg~~g~------~~l~sVE~YDp~t  251 (466)
                      ||  .++...++.+++|||.+++|+.+++|        |..++ +++.+++||+ ||.+..      ..++.+++|||.+
T Consensus        92 GG--~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~  168 (341)
T PLN02153         92 GG--RDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD  168 (341)
T ss_pred             CC--CCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence            99  76666788999999999999988753        55555 7889999999 886421      1257899999999


Q ss_pred             CCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCC------C-cccceEEEEeCCCCeeeeEE
Q 012294          252 LKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDI------S-KVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~------~-~~~~sVe~yDprt~~~vW~~  316 (466)
                                     +.|+.++++.        ......++.||++||.+..      . ..++.|++|||.+++  |+.
T Consensus       169 ---------------~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~  231 (341)
T PLN02153        169 ---------------GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTE  231 (341)
T ss_pred             ---------------CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEe
Confidence                           6677766543        1244689999999996521      1 124679999999999  998


Q ss_pred             cCC----cccccceeeecCCCceEEEEEee--------------CceeEeeccccCCCCCeEEeccCCc-cccccccccc
Q 012294          317 KDE----VDCFSDVTVSDNLSAIYKVGINS--------------GEVSYMDLRKLGDSSEWICLGDGRK-MVNGKRKEGF  377 (466)
Q Consensus       317 ~~~----~d~~~~~~v~~~~~~i~~v~~~~--------------g~l~~~dlr~~~~~~~W~~~~~~~~-~m~~~~~~~~  377 (466)
                      .++    -.+|+..++...+..||.+|+..              .+|+..|+.    .+.|..+..... .|.+  .+..
T Consensus       232 ~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~----~~~W~~~~~~~~~~~pr--~~~~  305 (341)
T PLN02153        232 VETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE----TLVWEKLGECGEPAMPR--GWTA  305 (341)
T ss_pred             ccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC----ccEEEeccCCCCCCCCC--cccc
Confidence            754    12566677777889999999963              267777764    478998875221 2331  2212


Q ss_pred             eeEEEEE-CCEEEEEeC
Q 012294          378 GCKIECH-ANQVFCGKG  393 (466)
Q Consensus       378 ~~~~~~~-~~~lf~~~~  393 (466)
                      .+.+.++ +++||+.-|
T Consensus       306 ~~~~~v~~~~~~~~~gG  322 (341)
T PLN02153        306 YTTATVYGKNGLLMHGG  322 (341)
T ss_pred             ccccccCCcceEEEEcC
Confidence            3344434 457887655

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.88  E-value=2.8e-21  Score=200.32  Aligned_cols=240  Identities=13%  Similarity=0.079  Sum_probs=164.5

Q ss_pred             ccccccCCCCCCCCCceeeecCCcEEEEcCC---ceeeEe-------cCC-CCCC-CccccceeeeeecccCCcEEEEec
Q 012294          121 EKSLILPLNGRDSPSAIATTNYGTLHVSHGS---KITSFD-------WSM-RKKS-TILTHFTAVDSLLALSPGVAAAGA  188 (466)
Q Consensus       121 ~~va~l~~~~R~~~~a~~a~~~g~lyva~GG---~ve~YD-------W~~-a~m~-~~R~~~~~v~sl~~l~~~lYaiGG  188 (466)
                      ..+++|| .+|...+  ++.+++.||+++|.   ...+||       |.. ++|+ .+|..+++++    ++++||++||
T Consensus        20 ~~l~~lP-~~~~~~~--~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~----~~~~IYV~GG   92 (376)
T PRK14131         20 EQLPDLP-VPFKNGT--GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF----IDGKLYVFGG   92 (376)
T ss_pred             ccCCCCC-cCccCCe--EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE----ECCEEEEEcC
Confidence            3456777 6766655  67789999976553   245665       988 8886 5788877776    9999999999


Q ss_pred             ccCCC------ceeccceeeeeCCCCceeecCCC--C--CceeEEEEECCeEEE-EecCCC-------------------
Q 012294          189 TDFSG------LQVLDLENGYVKETLNWENVTRS--S--STVQAIGSSDKHLFV-SFESGR-------------------  238 (466)
Q Consensus       189 ~~~~g------~~~l~svE~ydp~t~~W~~va~M--r--~~~~Ava~l~~~IYa-Gg~~g~-------------------  238 (466)
                        +..      ...++.+++|||.+++|+.++++  |  ..+.++++.+++||+ ||.+..                   
T Consensus        93 --~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~  170 (376)
T PRK14131         93 --IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK  170 (376)
T ss_pred             --CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence              543      23578999999999999999864  3  333423338999999 886431                   


Q ss_pred             ---------------cCCCeeEEEecCCCCccccccccccccCCceeecCccee------eEEeeCCeEEEEeecCCCCc
Q 012294          239 ---------------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISK  297 (466)
Q Consensus       239 ---------------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~  297 (466)
                                     ..++.|++|||.+               +.|+.+++|..      ..+..++.||++||.+.+..
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t---------------~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~  235 (376)
T PRK14131        171 DKINDAYFDKKPEDYFFNKEVLSYDPST---------------NQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL  235 (376)
T ss_pred             hhhHHHHhcCChhhcCcCceEEEEECCC---------------CeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc
Confidence                           0147899999999               66877775542      23457999999999754421


Q ss_pred             ccc--eEEEEeCCCCeeeeEEcCCc-cc--------ccceeeecCCCceEEEEEeeC----------ceeE----eeccc
Q 012294          298 VTG--NIKFWDIRSGNVAWEVKDEV-DC--------FSDVTVSDNLSAIYKVGINSG----------EVSY----MDLRK  352 (466)
Q Consensus       298 ~~~--sVe~yDprt~~~vW~~~~~~-d~--------~~~~~v~~~~~~i~~v~~~~g----------~l~~----~dlr~  352 (466)
                      ...  ++-.|||++++  |+...+. .+        ++.+.+...++.||.+|+.+.          .++.    -++.+
T Consensus       236 ~~~~~~~~~~~~~~~~--W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (376)
T PRK14131        236 RTDAVKQGKFTGNNLK--WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS  313 (376)
T ss_pred             CChhheEEEecCCCcc--eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee
Confidence            111  23345888899  9987652 11        223334557788999998642          2221    11112


Q ss_pred             cCC----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          353 LGD----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       353 ~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      .+.    .+.|..+.+    |..  ++ .+...+..+|.||+.-|
T Consensus       314 ~e~yd~~~~~W~~~~~----lp~--~r-~~~~av~~~~~iyv~GG  351 (376)
T PRK14131        314 DEIYALVNGKWQKVGE----LPQ--GL-AYGVSVSWNNGVLLIGG  351 (376)
T ss_pred             hheEEecCCcccccCc----CCC--Cc-cceEEEEeCCEEEEEcC
Confidence            232    688998877    764  66 66778889999999987

>PHA03098 kelch-like protein; Provisional

Probab=99.88  E-value=1.8e-21  Score=209.90  Aligned_cols=199  Identities=12%  Similarity=0.126  Sum_probs=153.4

Q ss_pred             eeecCCcEEEEcCC--------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeee
Q 012294          138 ATTNYGTLHVSHGS--------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGY  203 (466)
Q Consensus       138 ~a~~~g~lyva~GG--------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~y  203 (466)
                      ++++++.||+++|.        .+.+||     |.. ++|+.+|..+++++    ++++||++||  .++...++++|+|
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~----~~~~lyv~GG--~~~~~~~~~v~~y  363 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV----FNNRIYVIGG--IYNSISLNTVESW  363 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE----ECCEEEEEeC--CCCCEecceEEEE
Confidence            67789999965441        145788     988 99999999988877    9999999999  7666678999999


Q ss_pred             eCCCCceeecCCC---CCceeEEEEECCeEEE-EecC-CCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-
Q 012294          204 VKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFES-GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-  277 (466)
Q Consensus       204 dp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~-g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-  277 (466)
                      ||.+++|+..++|   |..++ +++++++||+ ||.. ....++++|+|||.+               +.|+.+++|.. 
T Consensus       364 d~~~~~W~~~~~lp~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t---------------~~W~~~~~~p~~  427 (534)
T PHA03098        364 KPGESKWREEPPLIFPRYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNT---------------NKWSKGSPLPIS  427 (534)
T ss_pred             cCCCCceeeCCCcCcCCccce-EEEECCEEEEECCcCCCCcccceEEEEeCCC---------------CeeeecCCCCcc
Confidence            9999999999998   66665 7889999999 8842 223479999999999               66777776543 


Q ss_pred             ----eEEeeCCeEEEEeecCCCCc--ccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc-----e
Q 012294          278 ----RWVSSYNLLLASGSHSDISK--VTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE-----V  345 (466)
Q Consensus       278 ----~~~~~~~~Lyv~Gg~~g~~~--~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~-----l  345 (466)
                          .....++.||++||.++...  ....+++|||++++  |+...+ ..++...++...++.||.+|+.++.     +
T Consensus       428 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v  505 (534)
T PHA03098        428 HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEI  505 (534)
T ss_pred             ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEEEcCCcCCccccee
Confidence                23458999999999765432  24469999999999  998765 3345566666678899999996644     3


Q ss_pred             eEeeccccCCCCCeEEecc
Q 012294          346 SYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       346 ~~~dlr~~~~~~~W~~~~~  364 (466)
                      ..-|..    .+.|..+.+
T Consensus       506 ~~yd~~----~~~W~~~~~  520 (534)
T PHA03098        506 EVYDDK----TNTWTLFCK  520 (534)
T ss_pred             EEEeCC----CCEEEecCC
Confidence            333322    688988876

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.87  E-value=3.1e-21  Score=197.04  Aligned_cols=199  Identities=15%  Similarity=0.131  Sum_probs=137.0

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCC-------------ceeeEe-----cCC-CC-CCCccccceeeeeecccCCc
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGS-------------KITSFD-----WSM-RK-KSTILTHFTAVDSLLALSPG  182 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG-------------~ve~YD-----W~~-a~-m~~~R~~~~~v~sl~~l~~~  182 (466)
                      +++|+..+|..++  ++++++.|||++|-             .+++||     |.. +. ++..|..+++++   .++++
T Consensus        46 l~~~p~~~R~~~~--~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~---~~~g~  120 (346)
T TIGR03547        46 IADFPGGPRNQAV--AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFS---LHNGQ  120 (346)
T ss_pred             CCCCCCCCcccce--EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEE---EeCCE
Confidence            4566634677777  78899999966541             146899     999 63 344444444441   28999


Q ss_pred             EEEEecccCCCce----------------------------------eccceeeeeCCCCceeecCCC---CCceeEEEE
Q 012294          183 VAAAGATDFSGLQ----------------------------------VLDLENGYVKETLNWENVTRS---SSTVQAIGS  225 (466)
Q Consensus       183 lYaiGG~~~~g~~----------------------------------~l~svE~ydp~t~~W~~va~M---r~~~~Ava~  225 (466)
                      |||+||  +++..                                  .++++|+|||.+++|+.+++|   ++...++++
T Consensus       121 IYviGG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~  198 (346)
T TIGR03547       121 AYFTGG--VNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVH  198 (346)
T ss_pred             EEEEcC--cChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEE
Confidence            999999  54320                                  247899999999999999998   233344789


Q ss_pred             ECCeEEE-EecCCCc-CCCeeEEEecCCCCccccccccccccCCceeecCcceee------------EEeeCCeEEEEee
Q 012294          226 SDKHLFV-SFESGRR-NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR------------WVSSYNLLLASGS  291 (466)
Q Consensus       226 l~~~IYa-Gg~~g~~-~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~------------~~~~~~~Lyv~Gg  291 (466)
                      ++++||+ ||..... ....+++||+..       .      .+.|+.+++|...            .+.++|.||++||
T Consensus       199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~-------~------~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG  265 (346)
T TIGR03547       199 KGNKLLLINGEIKPGLRTAEVKQYLFTG-------G------KLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGG  265 (346)
T ss_pred             ECCEEEEEeeeeCCCccchheEEEEecC-------C------CceeeecCCCCCCCCCccccccEEeeeEECCEEEEeec
Confidence            9999999 8864332 134566676533       1      1557766666321            2358999999999


Q ss_pred             cCCCC----------------cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeC
Q 012294          292 HSDIS----------------KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSG  343 (466)
Q Consensus       292 ~~g~~----------------~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g  343 (466)
                      ++...                ..+.++|+|||.+++  |+...+ -.++...++...++.||.+|+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~--W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       266 ANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGK--WSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             CCCCCchhhhhcCCccccCCCCceeEeeEEEecCCc--ccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            76321                012479999999999  998776 223455566678999999999654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.85  E-value=1.3e-19  Score=193.47  Aligned_cols=205  Identities=13%  Similarity=0.124  Sum_probs=155.5

Q ss_pred             cCCCCCCCCCceeeecCCcEEEEcCCc----------eeeEe-----cCC-CCC---CC-ccccceeeeeecccCCcEEE
Q 012294          126 LPLNGRDSPSAIATTNYGTLHVSHGSK----------ITSFD-----WSM-RKK---ST-ILTHFTAVDSLLALSPGVAA  185 (466)
Q Consensus       126 l~~~~R~~~~a~~a~~~g~lyva~GG~----------ve~YD-----W~~-a~m---~~-~R~~~~~v~sl~~l~~~lYa  185 (466)
                      +| .+|..++  ++++++.||+. ||.          +++||     |.. +++   +. .|..+++++    ++++||+
T Consensus       162 ~P-~pR~~h~--~~~~~~~iyv~-GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~----~~~~lYv  233 (470)
T PLN02193        162 GP-GLRCSHG--IAQVGNKIYSF-GGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS----IGSTLYV  233 (470)
T ss_pred             CC-CCccccE--EEEECCEEEEE-CCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE----ECCEEEE
Confidence            44 7888888  78889999965 542          46788     987 543   22 234555555    8999999


Q ss_pred             EecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccc
Q 012294          186 AGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       186 iGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      +||  +++...++.+++|||.+++|+.+++|      |..++ +++.+++||+ ||.++...++.+++|||.+       
T Consensus       234 fGG--~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t-------  303 (470)
T PLN02193        234 FGG--RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS-MAADEENVYVFGGVSATARLKTLDSYNIVD-------  303 (470)
T ss_pred             ECC--CCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE-EEEECCEEEEECCCCCCCCcceEEEEECCC-------
Confidence            999  77767789999999999999998876      55655 7889999999 8876655689999999999       


Q ss_pred             cccccccCCceeecCcc--------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----cccccce
Q 012294          259 GQNEIYGTDIESAIPAT--------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDCFSDV  326 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~--------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~~~~~  326 (466)
                              +.|+.+++.        .......++.||++||++|..  .+.+++|||.+++  |+..++    -..|+..
T Consensus       304 --------~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~--~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~  371 (470)
T PLN02193        304 --------KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVHYYDPVQDK--WTQVETFGVRPSERSVF  371 (470)
T ss_pred             --------CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc--cCceEEEECCCCE--EEEeccCCCCCCCccee
Confidence                    667766531        112345799999999988754  5689999999999  998754    2345666


Q ss_pred             eeecCCCceEEEEEeeC--------------ceeEeeccccCCCCCeEEecc
Q 012294          327 TVSDNLSAIYKVGINSG--------------EVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       327 ~v~~~~~~i~~v~~~~g--------------~l~~~dlr~~~~~~~W~~~~~  364 (466)
                      ++...++.||.+|+.+.              ++++.|+.    ++.|..+..
T Consensus       372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~----t~~W~~~~~  419 (470)
T PLN02193        372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE----TLQWERLDK  419 (470)
T ss_pred             EEEEECCEEEEECCccCCccccccCccceeccEEEEEcC----cCEEEEccc
Confidence            77778899999999642              45666654    477998875

>PLN02153 epithiospecifier protein

Probab=99.85  E-value=2e-19  Score=183.80  Aligned_cols=203  Identities=11%  Similarity=0.046  Sum_probs=147.9

Q ss_pred             CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CC--ceeEEEEECCeEEE-Eec
Q 012294          163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SS--TVQAIGSSDKHLFV-SFE  235 (466)
Q Consensus       163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~--~~~Ava~l~~~IYa-Gg~  235 (466)
                      ++.+|..+++++    ++++||++||.........+.+.+||+.+++|+.+++|    |.  ...++++++++||+ ||.
T Consensus        19 ~P~pR~~h~~~~----~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~   94 (341)
T PLN02153         19 GPGPRCSHGIAV----VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR   94 (341)
T ss_pred             CCCCCCcceEEE----ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence            678899988877    89999999993212233467899999999999998876    22  12347889999999 887


Q ss_pred             CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc-------e---eeEEeeCCeEEEEeecCCCC-----cccc
Q 012294          236 SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-------K---LRWVSSYNLLLASGSHSDIS-----KVTG  300 (466)
Q Consensus       236 ~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k---~~~~~~~~~Lyv~Gg~~g~~-----~~~~  300 (466)
                      ++...++.+++|||.+               +.|+.+++|       .   ......+++|||.||++...     ..+.
T Consensus        95 ~~~~~~~~v~~yd~~t---------------~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  159 (341)
T PLN02153         95 DEKREFSDFYSYDTVK---------------NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR  159 (341)
T ss_pred             CCCCccCcEEEEECCC---------------CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence            6655588999999999               556665543       1   22345889999999986321     1245


Q ss_pred             eEEEEeCCCCeeeeEEcCC-c---ccccceeeecCCCceEEEEEee-------------CceeEeeccccCCCCCeEEec
Q 012294          301 NIKFWDIRSGNVAWEVKDE-V---DCFSDVTVSDNLSAIYKVGINS-------------GEVSYMDLRKLGDSSEWICLG  363 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~-~---d~~~~~~v~~~~~~i~~v~~~~-------------g~l~~~dlr~~~~~~~W~~~~  363 (466)
                      .|++|||.+++  |+..++ .   ..+...++...++.||.+++.+             .+|++.|+.    ++.|..+.
T Consensus       160 ~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~----~~~W~~~~  233 (341)
T PLN02153        160 TIEAYNIADGK--WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA----SGKWTEVE  233 (341)
T ss_pred             eEEEEECCCCe--EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC----CCcEEecc
Confidence            79999999999  998654 2   4566667777888999998753             234444433    58899987


Q ss_pred             cCCccccccccccceeEEEEECCEEEEEeCC
Q 012294          364 DGRKMVNGKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       364 ~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                      .... +-  .+| +++..++.+++||+.-|.
T Consensus       234 ~~g~-~P--~~r-~~~~~~~~~~~iyv~GG~  260 (341)
T PLN02153        234 TTGA-KP--SAR-SVFAHAVVGKYIIIFGGE  260 (341)
T ss_pred             ccCC-CC--CCc-ceeeeEEECCEEEEECcc
Confidence            5211 11  245 778889999999999874

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.80  E-value=8.2e-19  Score=181.96  Aligned_cols=195  Identities=16%  Similarity=0.147  Sum_probs=131.8

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCC-------------ceeeEe-----cCC-CCC-CCccccceeeeeecccCCc
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGS-------------KITSFD-----WSM-RKK-STILTHFTAVDSLLALSPG  182 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG-------------~ve~YD-----W~~-a~m-~~~R~~~~~v~sl~~l~~~  182 (466)
                      +++|+..+|..++  ++++++.||+++|-             .+++||     |.. +++ +..|..+.+++   ..+++
T Consensus        67 l~~~p~~~r~~~~--~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~---~~~~~  141 (376)
T PRK14131         67 IAAFPGGPREQAV--AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVS---LHNGK  141 (376)
T ss_pred             CCcCCCCCcccce--EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEE---eeCCE
Confidence            4556534677766  78889999966541             146799     998 643 33344333332   26999


Q ss_pred             EEEEecccCCCc----------------------------------eeccceeeeeCCCCceeecCCC---CCceeEEEE
Q 012294          183 VAAAGATDFSGL----------------------------------QVLDLENGYVKETLNWENVTRS---SSTVQAIGS  225 (466)
Q Consensus       183 lYaiGG~~~~g~----------------------------------~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~  225 (466)
                      ||++||  .++.                                  ..++.+++|||.+++|+.+++|   ++...++++
T Consensus       142 IYv~GG--~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~  219 (376)
T PRK14131        142 AYITGG--VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI  219 (376)
T ss_pred             EEEECC--CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE
Confidence            999999  5321                                  0246799999999999999988   333445788


Q ss_pred             ECCeEEE-EecCCCcCCCeeEE----EecCCCCccccccccccccCCceeecCcceee-------------EEeeCCeEE
Q 012294          226 SDKHLFV-SFESGRRNSNSIMV----YDINSLKPVNEIGQNEIYGTDIESAIPATKLR-------------WVSSYNLLL  287 (466)
Q Consensus       226 l~~~IYa-Gg~~g~~~l~sVE~----YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-------------~~~~~~~Ly  287 (466)
                      ++++||+ ||..... .+++++    |||++               ++|+.+++|...             ...+++.||
T Consensus       220 ~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~---------------~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iy  283 (376)
T PRK14131        220 KGNKLWLINGEIKPG-LRTDAVKQGKFTGNN---------------LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLL  283 (376)
T ss_pred             ECCEEEEEeeeECCC-cCChhheEEEecCCC---------------cceeecCCCCCCCcCCcCCccceEeceeECCEEE
Confidence            9999999 8863322 234443    46666               567777666221             234799999


Q ss_pred             EEeecCCCCc----------------ccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEee
Q 012294          288 ASGSHSDISK----------------VTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINS  342 (466)
Q Consensus       288 v~Gg~~g~~~----------------~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~  342 (466)
                      ++||.+.+..                ...++|+|||++++  |+...+ -.++...++...++.||.+|+..
T Consensus       284 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~--W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        284 VAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK--WQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             EeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc--ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            9999775321                01368999999999  987665 33455666677888899999853

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.80  E-value=5e-20  Score=154.58  Aligned_cols=82  Identities=45%  Similarity=0.817  Sum_probs=69.5

Q ss_pred             EEEEECCeEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhccccc-CccccCCCCcChHHHH
Q 012294           25 VTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLLRT-GNLPSKAKAFDIEDLI   93 (466)
Q Consensus        25 V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~ylrt-G~l~~~~~~~~~~~Ll   93 (466)
                      |+|||||++|.|+++||.+ .|+|+|.+|++.         ++ +||||||++|++||+|||+ ++++. +.+.....|+
T Consensus         1 V~lNVGG~~f~~~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~-~~~~~~~~l~   78 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTR-YPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPI-PDEICLEELL   78 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHT-STTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB----TTS-HHHHH
T ss_pred             CEEEECCEEEEEcHHHHhh-CCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCC-CCchhHHHHH
Confidence            7999999999999999998 799999999983         22 9999999999999999999 78876 5578889999


Q ss_pred             Hhhccccchhh-HHhh
Q 012294           94 EESKFYNIESL-LINS  108 (466)
Q Consensus        94 ~EA~f~~l~~l-~~~~  108 (466)
                      +||+||+|+++ ++.|
T Consensus        79 ~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   79 EEAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHHT-HHHHBHHC
T ss_pred             HHHHHcCCCccccCCC
Confidence            99999999999 7776

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PLN02193 nitrile-specifier protein

Probab=99.79  E-value=9.9e-18  Score=178.98  Aligned_cols=207  Identities=11%  Similarity=0.089  Sum_probs=151.1

Q ss_pred             cCC-CC---CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----C--CceeEEEEEC
Q 012294          158 WSM-RK---KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----S--STVQAIGSSD  227 (466)
Q Consensus       158 W~~-a~---m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r--~~~~Ava~l~  227 (466)
                      |.. ++   ++.+|..|++++    +++.||++||.........+.+++||+.+++|+.++++    +  +...++++++
T Consensus       153 W~~~~~~~~~P~pR~~h~~~~----~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~  228 (470)
T PLN02193        153 WIKVEQKGEGPGLRCSHGIAQ----VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG  228 (470)
T ss_pred             EEEcccCCCCCCCccccEEEE----ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC
Confidence            987 54   578899998887    99999999993212223456799999999999987653    2  2233478899


Q ss_pred             CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCCCcc
Q 012294          228 KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDISKV  298 (466)
Q Consensus       228 ~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~~~~  298 (466)
                      ++||+ ||.++...++.+++|||.+               +.|+.+++|.        ......++.||+.||+++.. .
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t---------------~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~  292 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTT---------------NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-R  292 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCC---------------CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-C
Confidence            99999 8876665689999999999               5677666551        12335799999999988754 5


Q ss_pred             cceEEEEeCCCCeeeeEEcCC----cccccceeeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCcccc
Q 012294          299 TGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVN  370 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~  370 (466)
                      +..+++|||.+++  |+...+    -..|...++...++.||.+++.+|    ++++-|+.    .+.|..+..... +.
T Consensus       293 ~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~----t~~W~~~~~~g~-~P  365 (470)
T PLN02193        293 LKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPV----QDKWTQVETFGV-RP  365 (470)
T ss_pred             cceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECC----CCEEEEeccCCC-CC
Confidence            6689999999999  998653    123445555566788999999764    34445443    578999876211 11


Q ss_pred             ccccccceeEEEEECCEEEEEeCC
Q 012294          371 GKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                        .+| ..+..++++++||+.-|.
T Consensus       366 --~~R-~~~~~~~~~~~iyv~GG~  386 (470)
T PLN02193        366 --SER-SVFASAAVGKHIVIFGGE  386 (470)
T ss_pred             --CCc-ceeEEEEECCEEEEECCc
Confidence              245 677888999999999773

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.4e-17  Score=160.54  Aligned_cols=88  Identities=31%  Similarity=0.584  Sum_probs=78.6

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIED   91 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~   91 (466)
                      ..+.|+|||||+.|.|+++||++  -+++|..|+..      +  + +||||+|..|..||||||+|.+.++.....+.+
T Consensus         3 ~~~~vkLnvGG~~F~Tsk~TLtk--~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~E   80 (230)
T KOG2716|consen    3 MSETVKLNVGGTIFKTSKSTLTK--FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKE   80 (230)
T ss_pred             ccceEEEecCCeEEEeehhhhhh--hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHH
Confidence            35789999999999999999999  57899999985      2  2 999999999999999999999998544556789


Q ss_pred             HHHhhccccchhhHHhhcC
Q 012294           92 LIEESKFYNIESLLINSQS  110 (466)
Q Consensus        92 Ll~EA~f~~l~~l~~~~~~  110 (466)
                      |++||+||.|+.|++.|+.
T Consensus        81 l~~EA~fYlL~~Lv~~C~~   99 (230)
T KOG2716|consen   81 LLREAEFYLLDGLVELCQS   99 (230)
T ss_pred             HHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999953

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.68  E-value=1.8e-17  Score=156.70  Aligned_cols=90  Identities=34%  Similarity=0.571  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhcccccCccccCCCCcC
Q 012294           19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFD   88 (466)
Q Consensus        19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~   88 (466)
                      ++.+..|+|||||++|.|++.||.-+.|||+|.+||.+         ++ +||||||..|++||||||.|+++. .++++
T Consensus         5 ~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~-~s~i~   83 (302)
T KOG1665|consen    5 SNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPS-LSDID   83 (302)
T ss_pred             cChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceee-cCCcc
Confidence            44568999999999999999999999999999999986         23 899999999999999999999997 46889


Q ss_pred             hHHHHHhhccccchhhHHhhc
Q 012294           89 IEDLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        89 ~~~Ll~EA~f~~l~~l~~~~~  109 (466)
                      ...+++||+||||-.|++++.
T Consensus        84 ~lgvLeeArff~i~sL~~hle  104 (302)
T KOG1665|consen   84 CLGVLEEARFFQILSLKDHLE  104 (302)
T ss_pred             HHHHHHHhhHHhhHhHHhHHh
Confidence            999999999999999999984

>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.58  E-value=5.5e-16  Score=140.70  Aligned_cols=84  Identities=42%  Similarity=0.600  Sum_probs=75.6

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIE   90 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~   90 (466)
                      +.+|+|||||+.|.|+|+||.+ .|.+|+..+.+.        +  + |||||||..|..||||||.|+|.+.+  ...+
T Consensus        20 s~wVRlNVGGt~f~TtktTl~r-dp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~ee   96 (210)
T KOG2715|consen   20 SLWVRLNVGGTVFLTTKTTLPR-DPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEE   96 (210)
T ss_pred             eEEEEEecCCEEEEeeeecccc-CcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhh
Confidence            5799999999999999999999 898999998874        2  3 99999999999999999999999853  6778


Q ss_pred             HHHHhhccccchhhHHhh
Q 012294           91 DLIEESKFYNIESLLINS  108 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~~~~  108 (466)
                      -+|+||+||.+.+|++.+
T Consensus        97 GvL~EAefyn~~~li~li  114 (210)
T KOG2715|consen   97 GVLEEAEFYNDPSLIQLI  114 (210)
T ss_pred             ccchhhhccCChHHHHHH
Confidence            899999999999987765

>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.50  E-value=9e-15  Score=140.20  Aligned_cols=89  Identities=31%  Similarity=0.485  Sum_probs=77.6

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIE   90 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~   90 (466)
                      .-++.|+|||||+.|+|++.||.+ +|+|+|.+||++      +  + +|||||+.+|++||+||||.++.++....+..
T Consensus         6 ~~~~~v~lnvGG~~ytt~l~tL~~-~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~   84 (221)
T KOG2723|consen    6 EYPDVVELNVGGAIYTTRLGTLTK-FPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVE   84 (221)
T ss_pred             ccCCceeeccCCeEEEeeccceee-chHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHH
Confidence            346899999999999999999999 999999999995      2  2 99999999999999999997777643335689


Q ss_pred             HHHHhhccccchhhHHhhc
Q 012294           91 DLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~~~~~  109 (466)
                      .|++||+||+|..++..+.
T Consensus        85 ~L~rEA~f~~l~~~~~~l~  103 (221)
T KOG2723|consen   85 RLVREAEFFQLEAPVTYLL  103 (221)
T ss_pred             HHHHHHHHHccccHHHHHh
Confidence            9999999999998877663

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=99.46  E-value=2.7e-14  Score=144.31  Aligned_cols=104  Identities=31%  Similarity=0.510  Sum_probs=86.1

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------CceeEcCCchhHHHHhc
Q 012294            1 MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------THRFIDRDPELFSILLS   73 (466)
Q Consensus         1 ~~~~~~~~p~~~~~~~~~~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~~fiDRDp~~F~~IL~   73 (466)
                      ||+--..|||-..-+.  +..++.+.|||.|++|+|.+.||.+ +|+++|+.--.+       .+||+||||++|++|||
T Consensus        20 ~Pva~~PmP~aP~~~~--~r~De~lvlNvSGrRFeTWknTLer-yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLn   96 (632)
T KOG4390|consen   20 MPVAQQPMPPAPGVKA--KRQDELLVLNVSGRRFETWKNTLER-YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLN   96 (632)
T ss_pred             eecccCCCCCCchhhh--hccCcEEEEeccccchhHHHhHHHh-CchhhhCCcchheeecCCcccccccCChHHHHHHHH
Confidence            5666666776543333  3357899999999999999999999 999999875432       24999999999999999


Q ss_pred             ccccCccccCCCCcChHHHHHhhccccchh-hHHhh
Q 012294           74 LLRTGNLPSKAKAFDIEDLIEESKFYNIES-LLINS  108 (466)
Q Consensus        74 ylrtG~l~~~~~~~~~~~Ll~EA~f~~l~~-l~~~~  108 (466)
                      |+|||+|+. |+..++...-+|..||||-+ ++-.|
T Consensus        97 FYRTGkLHy-PR~ECi~AyDeELaF~Gl~PeligDC  131 (632)
T KOG4390|consen   97 FYRTGKLHY-PRHECISAYDEELAFYGLVPELIGDC  131 (632)
T ss_pred             HhhcCcccC-chHHHHHHhhhhhhHhcccHHHHhhh
Confidence            999999997 78899999999999999876 55666

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.1e-13  Score=144.37  Aligned_cols=89  Identities=29%  Similarity=0.370  Sum_probs=79.8

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccC--C---------------CceeEcCCchhHHHHhcccccCcccc
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLAD--S---------------THRFIDRDPELFSILLSLLRTGNLPS   82 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~--~---------------~~~fiDRDp~~F~~IL~ylrtG~l~~   82 (466)
                      ..++.|+|||||++|++.++||.+ +|.+.|+++..  +               ++||+||+|.+|.+||||+||||||.
T Consensus        28 ~~~~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~  106 (477)
T KOG3713|consen   28 ALDRRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHV  106 (477)
T ss_pred             CcCcEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecc
Confidence            446799999999999999999999 99999998865  1               35999999999999999999999998


Q ss_pred             CCCCcChHHHHHhhccccchhh-HHhhcC
Q 012294           83 KAKAFDIEDLIEESKFYNIESL-LINSQS  110 (466)
Q Consensus        83 ~~~~~~~~~Ll~EA~f~~l~~l-~~~~~~  110 (466)
                       |.+.+...+.+|.+||||++. ++.|++
T Consensus       107 -p~~vC~~~F~eEL~yWgI~~~~le~CC~  134 (477)
T KOG3713|consen  107 -PADVCPLSFEEELDYWGIDEAHLESCCW  134 (477)
T ss_pred             -ccccchHHHHHHHHHhCCChhhhhHHhH
Confidence             779999999999999999985 577754

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.23  E-value=2.6e-10  Score=111.43  Aligned_cols=238  Identities=16%  Similarity=0.153  Sum_probs=154.3

Q ss_pred             CCCCCCceeeecCCcEEEEcCCce-------------eeEe-----cCC-CC-------------CCCccccceeeeeec
Q 012294          130 GRDSPSAIATTNYGTLHVSHGSKI-------------TSFD-----WSM-RK-------------KSTILTHFTAVDSLL  177 (466)
Q Consensus       130 ~R~~~~a~~a~~~g~lyva~GG~v-------------e~YD-----W~~-a~-------------m~~~R~~~~~v~sl~  177 (466)
                      .|..++  ++.....|| ..||.+             +.+|     |+. ++             .+-.|..+.++.   
T Consensus        13 rRVNHA--avaVG~riY-SFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~---   86 (392)
T KOG4693|consen   13 RRVNHA--AVAVGSRIY-SFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE---   86 (392)
T ss_pred             ccccce--eeeecceEE-ecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE---
Confidence            456666  566778899 778754             2222     887 44             134577787776   


Q ss_pred             ccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCC-----C-CCceeEEEEECCeEEE-EecC--CCcCCCeeEEE
Q 012294          178 ALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTR-----S-SSTVQAIGSSDKHLFV-SFES--GRRNSNSIMVY  247 (466)
Q Consensus       178 ~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~-----M-r~~~~Ava~l~~~IYa-Gg~~--g~~~l~sVE~Y  247 (466)
                       .++++|+-||  .+. ....|..-+|||++++|...--     - |-.+. +|++++.+|+ ||+.  ..+..+.+.+.
T Consensus        87 -y~d~~yvWGG--RND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye~~a~~FS~d~h~l  162 (392)
T KOG4693|consen   87 -YQDKAYVWGG--RNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYEEDAQRFSQDTHVL  162 (392)
T ss_pred             -EcceEEEEcC--ccCcccccceeeeeccccccccccceeeecCCccCCce-eeEECcEEEEecChHHHHHhhhccceeE
Confidence             9999999999  443 4457888899999999975431     1 77777 6999999999 7752  23346778888


Q ss_pred             ecCC--CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCc--------ccceEEEEeCCCCeeeeEEc
Q 012294          248 DINS--LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISK--------VTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       248 Dp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~--------~~~sVe~yDprt~~~vW~~~  317 (466)
                      |..|  |+.+++-|.     .+.|.-.    ..-...++.+|+-||....++        |...|..+|.+|+-  |.-.
T Consensus       163 d~~TmtWr~~~Tkg~-----PprwRDF----H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~a--W~r~  231 (392)
T KOG4693|consen  163 DFATMTWREMHTKGD-----PPRWRDF----HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGA--WTRT  231 (392)
T ss_pred             eccceeeeehhccCC-----Cchhhhh----hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccc--cccC
Confidence            8887  655555543     1122210    011137899999999654332        56679999999998  9875


Q ss_pred             CC-----cccccceeeecCCCceEEEEEeeCcee--EeeccccCC-CCCeEEeccCCccccccccccceeEEEEECCEEE
Q 012294          318 DE-----VDCFSDVTVSDNLSAIYKVGINSGEVS--YMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVF  389 (466)
Q Consensus       318 ~~-----~d~~~~~~v~~~~~~i~~v~~~~g~l~--~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf  389 (466)
                      .+     +-+|+ ...=.-+..||.-|+++|.|-  +-||=+..- +-.|..++.+-|.-.- ++|   ..-.+.++++|
T Consensus       232 p~~~~~P~GRRS-HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-RRR---qC~~v~g~kv~  306 (392)
T KOG4693|consen  232 PENTMKPGGRRS-HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-RRR---QCSVVSGGKVY  306 (392)
T ss_pred             CCCCcCCCcccc-cceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-ccc---eeEEEECCEEE
Confidence            44     22332 233347788999999888742  223333322 4568888876654221 122   22345677777


Q ss_pred             EEeC
Q 012294          390 CGKG  393 (466)
Q Consensus       390 ~~~~  393 (466)
                      ...|
T Consensus       307 LFGG  310 (392)
T KOG4693|consen  307 LFGG  310 (392)
T ss_pred             EecC
Confidence            7765

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.20  E-value=7e-10  Score=119.22  Aligned_cols=218  Identities=16%  Similarity=0.155  Sum_probs=151.1

Q ss_pred             CCCCCCCceeeecCCcEEEEcCC-------c--eeeEe-----cCC----CCCCCccccceeeeeecccCCcEEEEeccc
Q 012294          129 NGRDSPSAIATTNYGTLHVSHGS-------K--ITSFD-----WSM----RKKSTILTHFTAVDSLLALSPGVAAAGATD  190 (466)
Q Consensus       129 ~~R~~~~a~~a~~~g~lyva~GG-------~--ve~YD-----W~~----a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~  190 (466)
                      .+|..++  ++..++.+|+.+|.       .  +..+|     |..    ...+.+|..+..++    ++.+||++||  
T Consensus        59 ~~R~~hs--~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~----~~~~l~lfGG--  130 (482)
T KOG0379|consen   59 IPRAGHS--AVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSA----VGDKLYLFGG--  130 (482)
T ss_pred             chhhccc--eeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEE----ECCeEEEEcc--
Confidence            6788888  55569999955442       1  34555     776    22356777777776    9999999999  


Q ss_pred             CC-CceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-EecCCCc-CCCeeEEEecCC--CCcccccc
Q 012294          191 FS-GLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFESGRR-NSNSIMVYDINS--LKPVNEIG  259 (466)
Q Consensus       191 ~~-g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~~g~~-~l~sVE~YDp~t--~~~~~~~~  259 (466)
                      .+ ....++.+-.||+.+.+|....+-      |.++. +++.+++||+ ||.+... .+|.+.+||++|  |+.+.+-|
T Consensus       131 ~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs-~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g  209 (482)
T KOG0379|consen  131 TDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS-ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG  209 (482)
T ss_pred             ccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce-EEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence            44 345588899999999999877542      77776 7888999999 8875544 699999999999  33332222


Q ss_pred             ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----cccccceeeecCCCce
Q 012294          260 QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAI  335 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i  335 (466)
                      .         .+.|-.....+..++.+|++||.+....+++.+-++|.++-+  |.....    ..+|+.+.....+..+
T Consensus       210 ~---------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~--W~~~~~~g~~p~~R~~h~~~~~~~~~  278 (482)
T KOG0379|consen  210 E---------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWE--WKLLPTGGDLPSPRSGHSLTVSGDHL  278 (482)
T ss_pred             C---------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccce--eeeccccCCCCCCcceeeeEEECCEE
Confidence            2         112222334556899999999988555588899999999944  663222    4466777777899999


Q ss_pred             EEEEEeeCc-e-eEeeccccCC-CCCeEEeccCC
Q 012294          336 YKVGINSGE-V-SYMDLRKLGD-SSEWICLGDGR  366 (466)
Q Consensus       336 ~~v~~~~g~-l-~~~dlr~~~~-~~~W~~~~~~~  366 (466)
                      |.+|+.... . -+.|+-.+.. ++.|..+..-.
T Consensus       279 ~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  279 LLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             EEEcCCcccccccccccccccccccceeeeeccc
Confidence            999984332 1 2244444433 67788887743

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.19  E-value=1.9e-09  Score=115.95  Aligned_cols=206  Identities=15%  Similarity=0.153  Sum_probs=151.7

Q ss_pred             CCCccccceeeeeecccCCcEEEEecccCCCceeccc--eeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-E
Q 012294          163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDL--ENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-S  233 (466)
Q Consensus       163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~s--vE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-G  233 (466)
                      .+..|..|.++.    +++++|+.||  ......+..  +-.+|..+..|+..+.-      |.++. +++.+++||. |
T Consensus        57 ~p~~R~~hs~~~----~~~~~~vfGG--~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfG  129 (482)
T KOG0379|consen   57 GPIPRAGHSAVL----IGNKLYVFGG--YGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFG  129 (482)
T ss_pred             CcchhhccceeE----ECCEEEEECC--CCCCCccccceeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEc
Confidence            456688887777    7999999999  554444444  67779999999865532      66665 7889999999 8


Q ss_pred             ecC-CCcCCCeeEEEecCCCCccccccccccccCCceeecCcc--------eeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294          234 FES-GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT--------KLRWVSSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       234 g~~-g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~--------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                      |.+ ...+++.+-.||+.|       ++        |....+.        .......+++||+.||.+.....++.+-.
T Consensus       130 G~~~~~~~~~~l~~~d~~t-------~~--------W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i  194 (482)
T KOG0379|consen  130 GTDKKYRNLNELHSLDLST-------RT--------WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHI  194 (482)
T ss_pred             cccCCCCChhheEeccCCC-------Cc--------EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeee
Confidence            876 355689999999999       33        4433322        23344678999999999887767889999


Q ss_pred             EeCCCCeeeeEEcCC----cccccceeeecCCCceEEEEEee-CceeEeeccccCC-CCCeEEeccCCccccccccccce
Q 012294          305 WDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINS-GEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFG  378 (466)
Q Consensus       305 yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~-g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~  378 (466)
                      ||+++.+  |+...-    --+|.+.++..-+..+|.+++.+ ++.|+.|+-.+.- +-.|..+..... +-  .+| ++
T Consensus       195 ~d~~~~~--W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~-~p--~~R-~~  268 (482)
T KOG0379|consen  195 YDLETST--WSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD-LP--SPR-SG  268 (482)
T ss_pred             ecccccc--ceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCC-CC--CCc-ce
Confidence            9999999  988754    22567778888888999999866 6666666666553 345664443221 11  245 99


Q ss_pred             eEEEEECCEEEEEeCCeE
Q 012294          379 CKIECHANQVFCGKGGEI  396 (466)
Q Consensus       379 ~~~~~~~~~lf~~~~~~~  396 (466)
                      +.+++.+.++|+..|+..
T Consensus       269 h~~~~~~~~~~l~gG~~~  286 (482)
T KOG0379|consen  269 HSLTVSGDHLLLFGGGTD  286 (482)
T ss_pred             eeeEEECCEEEEEcCCcc
Confidence            999999999999988877

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.04  E-value=1.8e-10  Score=92.49  Aligned_cols=81  Identities=31%  Similarity=0.411  Sum_probs=70.9

Q ss_pred             eEEEEECCeEEEEeHHHhhccCCCCccccccCC-----C--c-eeEcCCchhHHHHhcccccCccccCCCCcChHHHHHh
Q 012294           24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-----T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEE   95 (466)
Q Consensus        24 ~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-----~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~E   95 (466)
                      +|+|+|||+.|.+||.+|++  .+++|.+|+.+     +  . .+.|.+++.|+.+|+|+|++++.+++  .+...++++
T Consensus         1 dv~i~v~~~~~~~h~~iL~~--~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~   76 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAA--CSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL   76 (90)
T ss_pred             CeEEEECCEEEehHHHHHhh--cCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence            47899999999999999998  46799999985     1  2 47789999999999999999998743  378999999


Q ss_pred             hccccchhhHHhh
Q 012294           96 SKFYNIESLLINS  108 (466)
Q Consensus        96 A~f~~l~~l~~~~  108 (466)
                      |.||+++++.+.|
T Consensus        77 a~~~~~~~l~~~c   89 (90)
T smart00225       77 ADYLQIPGLVELC   89 (90)
T ss_pred             HHHHCcHHHHhhh
Confidence            9999999999887

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.87  E-value=2.3e-08  Score=97.93  Aligned_cols=168  Identities=13%  Similarity=0.129  Sum_probs=119.6

Q ss_pred             cCCCCCCCCCceeeecCCcEEEEcCC-----c---eeeEe-----cCC----CCCCCccccceeeeeecccCCcEEEEec
Q 012294          126 LPLNGRDSPSAIATTNYGTLHVSHGS-----K---ITSFD-----WSM----RKKSTILTHFTAVDSLLALSPGVAAAGA  188 (466)
Q Consensus       126 l~~~~R~~~~a~~a~~~g~lyva~GG-----~---ve~YD-----W~~----a~m~~~R~~~~~v~sl~~l~~~lYaiGG  188 (466)
                      +-|-.|..++  ++..++.+|+-+|-     .   ..+||     |..    .-.+-.|..+.+++    +++.+|+.||
T Consensus        74 ~VPyqRYGHt--vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV----~gn~MyiFGG  147 (392)
T KOG4693|consen   74 AVPYQRYGHT--VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACV----WGNQMYIFGG  147 (392)
T ss_pred             ccchhhcCce--EEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeE----ECcEEEEecC
Confidence            3337788888  78889999966441     1   24677     876    22467899999988    9999999999


Q ss_pred             ccCCCc-ee-ccceeeeeCCCCceeecCC----C--CCceeEEEEECCeEEE-EecCCC---------cCCCeeEEEecC
Q 012294          189 TDFSGL-QV-LDLENGYVKETLNWENVTR----S--SSTVQAIGSSDKHLFV-SFESGR---------RNSNSIMVYDIN  250 (466)
Q Consensus       189 ~~~~g~-~~-l~svE~ydp~t~~W~~va~----M--r~~~~Ava~l~~~IYa-Gg~~g~---------~~l~sVE~YDp~  250 (466)
                        +... +. -+.+-.+|..+-+|..+-.    .  |-.+. ++++++.+|+ ||....         .+.+.|..+|..
T Consensus       148 --ye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~  224 (392)
T KOG4693|consen  148 --YEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA  224 (392)
T ss_pred             --hHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEecc
Confidence              6422 22 3446677999999987643    2  55554 6889999999 885332         125688888988


Q ss_pred             CCCccccccccccccCCceeecCc--ce------eeEEeeCCeEEEEeecCCCCc-ccceEEEEeCCCCeeeeEEcCC
Q 012294          251 SLKPVNEIGQNEIYGTDIESAIPA--TK------LRWVSSYNLLLASGSHSDISK-VTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       251 t~~~~~~~~~~~~~~~~~w~~~~~--~k------~~~~~~~~~Lyv~Gg~~g~~~-~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      |               ..|...++  |+      ..-.+.+++||+-||++|.-. ..+..-+|||+|..  |+.+++
T Consensus       225 T---------------~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~--W~~I~~  285 (392)
T KOG4693|consen  225 T---------------GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSM--WSVISV  285 (392)
T ss_pred             c---------------cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccch--heeeec
Confidence            8               44555442  21      123358999999999999732 23468899999999  999877

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.63  E-value=2e-08  Score=72.97  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=40.0

Q ss_pred             ccccceeeeeecccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCCC
Q 012294          166 ILTHFTAVDSLLALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       166 ~R~~~~~v~sl~~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      +|+++++++    ++++||++||  +++ ...++++|+||+.+++|+.+++|
T Consensus         1 pR~~~~~~~----~~~~iyv~GG--~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVV----VGNKIYVIGG--YDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEE----ETTEEEEEEE--BESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCccCEEEE----ECCEEEEEee--ecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            478888887    9999999999  777 77899999999999999999887

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.61  E-value=1.3e-06  Score=90.23  Aligned_cols=181  Identities=15%  Similarity=0.240  Sum_probs=120.3

Q ss_pred             cCC---CCCCCccccceeeeeecccCCcEEEEecccCC-----CceeccceeeeeCCCCceeecCCC-----CCceeEEE
Q 012294          158 WSM---RKKSTILTHFTAVDSLLALSPGVAAAGATDFS-----GLQVLDLENGYVKETLNWENVTRS-----SSTVQAIG  224 (466)
Q Consensus       158 W~~---a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-----g~~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava  224 (466)
                      |..   ++.+++|+.|.+|+   +-.+.+|+.||. |.     -.+.++..-.+|..+++|+.+.--     |+.+- ++
T Consensus       110 Wkk~~spn~P~pRsshq~va---~~s~~l~~fGGE-faSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHR-Mv  184 (521)
T KOG1230|consen  110 WKKVVSPNAPPPRSSHQAVA---VPSNILWLFGGE-FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHR-MV  184 (521)
T ss_pred             eeEeccCCCcCCCccceeEE---eccCeEEEeccc-cCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccce-eE
Confidence            987   55678899988887   345899999993 32     123466677889999999988643     88877 78


Q ss_pred             EECCeEEE--EecCCC---cCCCeeEEEecCC--CCccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCC
Q 012294          225 SSDKHLFV--SFESGR---RNSNSIMVYDINS--LKPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDIS  296 (466)
Q Consensus       225 ~l~~~IYa--Gg~~g~---~~l~sVE~YDp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~  296 (466)
                      +...+|+.  ||++..   .+.|.|.+||.+|  |+-+.+=|.        |. .|-...+..+. +|-||+-|||+-..
T Consensus       185 awK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga--------~P-tpRSGcq~~vtpqg~i~vyGGYsK~~  255 (521)
T KOG1230|consen  185 AWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA--------GP-TPRSGCQFSVTPQGGIVVYGGYSKQR  255 (521)
T ss_pred             EeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC--------CC-CCCCcceEEecCCCcEEEEcchhHhh
Confidence            88888777  665443   3489999999999  444333111        11 11223455555 99999999987332


Q ss_pred             --------cccceEEEEeCCCC---eeeeEEcCC----cccccceee--ecCCCceEEEEEee-------------Ccee
Q 012294          297 --------KVTGNIKFWDIRSG---NVAWEVKDE----VDCFSDVTV--SDNLSAIYKVGINS-------------GEVS  346 (466)
Q Consensus       297 --------~~~~sVe~yDprt~---~~vW~~~~~----~d~~~~~~v--~~~~~~i~~v~~~~-------------g~l~  346 (466)
                              ..+..+=+.+|++|   +=||+-.-|    -.+|++++|  ...+.++|=-||.+             .+||
T Consensus       256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy  335 (521)
T KOG1230|consen  256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY  335 (521)
T ss_pred             hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhh
Confidence                    13445778888874   533444333    345666544  44667777666655             6788


Q ss_pred             Eeeccc
Q 012294          347 YMDLRK  352 (466)
Q Consensus       347 ~~dlr~  352 (466)
                      |.||-+
T Consensus       336 ~fdlt~  341 (521)
T KOG1230|consen  336 FFDLTR  341 (521)
T ss_pred             heeccc
Confidence            888865

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.58  E-value=3.4e-06  Score=87.16  Aligned_cols=206  Identities=14%  Similarity=0.167  Sum_probs=136.6

Q ss_pred             CCCCccccceeeeeecccCCcEEEEecccCCCc--eeccceeeeeCCCCceeecCCC-----CCceeEEEEECCeEEE-E
Q 012294          162 KKSTILTHFTAVDSLLALSPGVAAAGATDFSGL--QVLDLENGYVKETLNWENVTRS-----SSTVQAIGSSDKHLFV-S  233 (466)
Q Consensus       162 ~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~--~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava~l~~~IYa-G  233 (466)
                      +.+++|+++...+  .=....|++.||.=++|.  +.++..=.||..+++|..+.+.     |+++.|||+-.|.+|+ |
T Consensus        62 ~~PspRsn~sl~~--nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG  139 (521)
T KOG1230|consen   62 PPPSPRSNPSLFA--NPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG  139 (521)
T ss_pred             CCCCCCCCcceee--ccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence            3445566543332  013346888888555654  4577788999999999987543     8899888888799999 8


Q ss_pred             ecCCC------cCCCeeEEEecCCCCccccccccccccCCceeecCcc-------eeeEEeeCCeEEEEeecCCCC---c
Q 012294          234 FESGR------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-------KLRWVSSYNLLLASGSHSDIS---K  297 (466)
Q Consensus       234 g~~g~------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k~~~~~~~~~Lyv~Gg~~g~~---~  297 (466)
                      |.-.+      ..-+..-.+|..|               .+|+.+...       ....+...+.|+.-||+-...   .
T Consensus       140 GEfaSPnq~qF~HYkD~W~fd~~t---------------rkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~  204 (521)
T KOG1230|consen  140 GEFASPNQEQFHHYKDLWLFDLKT---------------RKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYI  204 (521)
T ss_pred             cccCCcchhhhhhhhheeeeeecc---------------chheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceE
Confidence            86221      1246778888888               456555422       233455788999999965443   3


Q ss_pred             ccceEEEEeCCCCeeeeEEcCC----cccccceeeecC-CCceEEEEEeeC--------------ceeEeeccccCCCCC
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDN-LSAIYKVGINSG--------------EVSYMDLRKLGDSSE  358 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~-~~~i~~v~~~~g--------------~l~~~dlr~~~~~~~  358 (466)
                      |.+.|-+||..|=+  |+-.++    -++|+++.+.+. .+.||+-|+++-              +++.++++.. +.|.
T Consensus       205 YyNDvy~FdLdtyk--W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~-~~dK  281 (521)
T KOG1230|consen  205 YYNDVYAFDLDTYK--WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG-REDK  281 (521)
T ss_pred             EeeeeEEEecccee--eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC-CCcc
Confidence            66789999999988  998887    467888888887 788898888653              3444444442 2566


Q ss_pred             eEEeccCCcc-ccccccccceeEEEEECC-EEEE
Q 012294          359 WICLGDGRKM-VNGKRKEGFGCKIECHAN-QVFC  390 (466)
Q Consensus       359 W~~~~~~~~~-m~~~~~~~~~~~~~~~~~-~lf~  390 (466)
                      |+ |..-++. |+- .+| +|..++.+.+ |-+.
T Consensus       282 w~-W~kvkp~g~kP-spR-sgfsv~va~n~kal~  312 (521)
T KOG1230|consen  282 WV-WTKVKPSGVKP-SPR-SGFSVAVAKNHKALF  312 (521)
T ss_pred             ee-EeeccCCCCCC-CCC-CceeEEEecCCceEE
Confidence            76 4443332 332 467 7777777765 4443

>PF13964 Kelch_6: Kelch motif

Probab=98.57  E-value=7.5e-08  Score=71.27  Aligned_cols=45  Identities=18%  Similarity=0.177  Sum_probs=40.0

Q ss_pred             ccccceeeeeecccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCCC
Q 012294          166 ILTHFTAVDSLLALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       166 ~R~~~~~v~sl~~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      +|.++++++    ++++||++||  ... ...++.+++|||++++|+.+++|
T Consensus         1 pR~~~s~v~----~~~~iyv~GG--~~~~~~~~~~v~~yd~~t~~W~~~~~m   46 (50)
T PF13964_consen    1 PRYGHSAVV----VGGKIYVFGG--YDNSGKYSNDVERYDPETNTWEQLPPM   46 (50)
T ss_pred             CCccCEEEE----ECCEEEEECC--CCCCCCccccEEEEcCCCCcEEECCCC
Confidence            477787777    9999999999  666 66789999999999999999999

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=98.57  E-value=2.9e-08  Score=100.37  Aligned_cols=82  Identities=28%  Similarity=0.449  Sum_probs=71.4

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccc------cCC--CceeEcCCchhHHHHhcccccC-ccccCCCCcChHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKL------ADS--THRFIDRDPELFSILLSLLRTG-NLPSKAKAFDIED   91 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~m------f~~--~~~fiDRDp~~F~~IL~ylrtG-~l~~~~~~~~~~~   91 (466)
                      ..++|+|||.|-+|+|...||++ +|+++|..-      |..  ++||+||+...|..||.|+++| +|.- |-+.+..-
T Consensus        59 ~~ervvINisGlRFeTql~TL~q-fP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrR-PvnVPlDi  136 (507)
T KOG1545|consen   59 CCERVVINISGLRFETQLKTLAQ-FPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRR-PVNVPLDI  136 (507)
T ss_pred             cccEEEEEeccceehHHHHHHhh-CchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecC-CccccHHH
Confidence            45899999999999999999999 999999863      322  5799999999999999999985 6664 66778899


Q ss_pred             HHHhhccccchhh
Q 012294           92 LIEESKFYNIESL  104 (466)
Q Consensus        92 Ll~EA~f~~l~~l  104 (466)
                      +++|.+||||.+-
T Consensus       137 F~eEirFyqlG~e  149 (507)
T KOG1545|consen  137 FLEEIRFYQLGDE  149 (507)
T ss_pred             HHHHHHHHHhhHH
Confidence            9999999999874

>smart00612 Kelch Kelch domain

Probab=98.36  E-value=6.4e-07  Score=64.07  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECC
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDK  228 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~  228 (466)
                      +||++||  +++...++.+|+|||.+++|+.+++|   |..++ ++++++
T Consensus         1 ~iyv~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~g   47 (47)
T smart00612        1 KIYVVGG--FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHG-VAVING   47 (47)
T ss_pred             CEEEEeC--CCCCceeeeEEEECCCCCeEccCCCCCCccccce-EEEeCC
Confidence            4899999  76666789999999999999999999   66665 666654

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.25  E-value=6.2e-07  Score=76.04  Aligned_cols=86  Identities=27%  Similarity=0.390  Sum_probs=71.0

Q ss_pred             CCCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC-----c---e-eEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294           21 DSNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADST-----H---R-FIDRDPELFSILLSLLRTGNLPSKAKAFDIE   90 (466)
Q Consensus        21 ~~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~~-----~---~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~   90 (466)
                      ...+++|.|+ |+.|.+||.+|+.+  ++||+.||+.+     +   + +-|-+++.|..+|+|+|+|++.+. ...++.
T Consensus         9 ~~~D~~i~v~d~~~~~vhk~iL~~~--S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~   85 (111)
T PF00651_consen    9 EFSDVTIRVGDGKTFYVHKNILAAR--SPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVE   85 (111)
T ss_dssp             TS--EEEEETTTEEEEE-HHHHHHH--BHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHH
T ss_pred             CCCCEEEEECCCEEEeechhhhhcc--chhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHH
Confidence            4579999999 89999999999984  56999999862     1   3 567899999999999999998873 356789


Q ss_pred             HHHHhhccccchhhHHhhc
Q 012294           91 DLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~~~~~  109 (466)
                      .+++-|.+|+++.|.+.|.
T Consensus        86 ~ll~lA~~~~~~~L~~~~~  104 (111)
T PF00651_consen   86 ELLELADKLQIPELKKACE  104 (111)
T ss_dssp             HHHHHHHHTTBHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999883

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.22  E-value=1.8e-06  Score=62.64  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=35.7

Q ss_pred             CCceeEEEEECCeEEE-EecCC-CcCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294          217 SSTVQAIGSSDKHLFV-SFESG-RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT  275 (466)
Q Consensus       217 r~~~~Ava~l~~~IYa-Gg~~g-~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~  275 (466)
                      |..++ +++++++||+ ||.+. ...+++||+||+++               +.|..+++|
T Consensus         2 R~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~---------------~~W~~~~~m   46 (47)
T PF01344_consen    2 RSGHA-AVVVGNKIYVIGGYDGNNQPTNSVEVYDPET---------------NTWEELPPM   46 (47)
T ss_dssp             BBSEE-EEEETTEEEEEEEBESTSSBEEEEEEEETTT---------------TEEEEEEEE
T ss_pred             CccCE-EEEECCEEEEEeeecccCceeeeEEEEeCCC---------------CEEEEcCCC
Confidence            44555 8999999999 88766 55699999999999               779988776

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=98.21  E-value=1.9e-06  Score=63.63  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             CCceeEEEEECCeEEE-EecCC-CcCCCeeEEEecCCCCccccccccccccCCceeecCccee
Q 012294          217 SSTVQAIGSSDKHLFV-SFESG-RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL  277 (466)
Q Consensus       217 r~~~~Ava~l~~~IYa-Gg~~g-~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~  277 (466)
                      |..++ +++++++||+ ||.+. ...++.|++|||+|               +.|+.+++|..
T Consensus         2 R~~~s-~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t---------------~~W~~~~~mp~   48 (50)
T PF13964_consen    2 RYGHS-AVVVGGKIYVFGGYDNSGKYSNDVERYDPET---------------NTWEQLPPMPT   48 (50)
T ss_pred             CccCE-EEEECCEEEEECCCCCCCCccccEEEEcCCC---------------CcEEECCCCCC
Confidence            34455 7889999999 88766 45589999999999               77999988864

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.05  E-value=5.8e-06  Score=60.99  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=38.5

Q ss_pred             ccccceeeeeecccCCcEEEEecccC---CCceeccceeeeeCCCCceeecCCC
Q 012294          166 ILTHFTAVDSLLALSPGVAAAGATDF---SGLQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       166 ~R~~~~~v~sl~~l~~~lYaiGG~~~---~g~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      +|..+.+++    ++++||++||  +   .+...++.++.||+++++|+.+++|
T Consensus         1 ~r~~hs~~~----~~~kiyv~GG--~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVV----LDGKIYVFGG--YGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEE----ECCEEEEECC--cccCCCCcccceeEEEECCCCEEeecCCC
Confidence            467777776    9999999999  6   4556788999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.95  E-value=0.011  Score=55.00  Aligned_cols=226  Identities=17%  Similarity=0.265  Sum_probs=125.0

Q ss_pred             eecccCC-cEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC-eEEE-EecCCCcCCCeeEEEecC
Q 012294          175 SLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK-HLFV-SFESGRRNSNSIMVYDIN  250 (466)
Q Consensus       175 sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~-~IYa-Gg~~g~~~l~sVE~YDp~  250 (466)
                      .+.+... ..+++++  .+|     .+..||..+.+-...-.. .....++....+ .+++ ++.     ...+..||..
T Consensus        56 ~~~~~~~~~~l~~~~--~~~-----~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~  123 (289)
T cd00200          56 DVAASADGTYLASGS--SDK-----TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVE  123 (289)
T ss_pred             EEEECCCCCEEEEEc--CCC-----eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECC
Confidence            3334443 4667776  444     344566554321111111 222332444443 4555 442     3578899998


Q ss_pred             CCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeec
Q 012294          251 SLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSD  330 (466)
Q Consensus       251 t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~  330 (466)
                      +.+++..+...     .    .....+.+.+. +.++++|..      .+.|.+||.++++.+..+..+......+...+
T Consensus       124 ~~~~~~~~~~~-----~----~~i~~~~~~~~-~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  187 (289)
T cd00200         124 TGKCLTTLRGH-----T----DWVNSVAFSPD-GTFVASSSQ------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP  187 (289)
T ss_pred             CcEEEEEeccC-----C----CcEEEEEEcCc-CCEEEEEcC------CCcEEEEEccccccceeEecCccccceEEECC
Confidence            74433333310     0    01233444443 455555542      34799999999998888877776778888888


Q ss_pred             CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC-CEEEEEe--CCeEEEeEeeeecCC
Q 012294          331 NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA-NQVFCGK--GGEIELWSEIVMGSR  407 (466)
Q Consensus       331 ~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~lf~~~--~~~~~v~~~~~~~~~  407 (466)
                      ++..|+ +++.+|.+.+.|++....      +..    ... ... .-..++... ++++++-  ++.|.+|.--    .
T Consensus       188 ~~~~l~-~~~~~~~i~i~d~~~~~~------~~~----~~~-~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~----~  250 (289)
T cd00200         188 DGEKLL-SSSSDGTIKLWDLSTGKC------LGT----LRG-HEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLR----T  250 (289)
T ss_pred             CcCEEE-EecCCCcEEEEECCCCce------ecc----hhh-cCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcC----C
Confidence            887766 555699999999987331      111    100 011 112233332 4555554  7899999753    1


Q ss_pred             CCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294          408 KSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       408 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                      .     . ....+.         ...+.|..+++-.+ +++++=.+...+.||+
T Consensus       251 ~-----~-~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         251 G-----E-CVQTLS---------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             c-----e-eEEEcc---------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            1     0 111111         13457999988875 5666666666899995

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.78  E-value=0.017  Score=60.33  Aligned_cols=242  Identities=13%  Similarity=0.153  Sum_probs=134.3

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCC-
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETL-  208 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~-  208 (466)
                      +..++.+|+... |.+.++|       |.. .+- ...+  ..+    +.++.+|+..+   +|     .+-++|+.+. 
T Consensus       117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~s--sP~----v~~~~v~v~~~---~g-----~l~ald~~tG~  181 (394)
T PRK11138        117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALS--RPV----VSDGLVLVHTS---NG-----MLQALNESDGA  181 (394)
T ss_pred             EEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceec--CCE----EECCEEEEECC---CC-----EEEEEEccCCC
Confidence            445778885422 4567787       877 321 1111  122    25777776443   22     3567777655 


Q ss_pred             -ceeecCC---C--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC--c------
Q 012294          209 -NWENVTR---S--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--A------  274 (466)
Q Consensus       209 -~W~~va~---M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--~------  274 (466)
                       .|+.-..   +  +.... -++.++.+|++..+     ..+-.+|+++       |+      ..|+.-.  +      
T Consensus       182 ~~W~~~~~~~~~~~~~~~s-P~v~~~~v~~~~~~-----g~v~a~d~~~-------G~------~~W~~~~~~~~~~~~~  242 (394)
T PRK11138        182 VKWTVNLDVPSLTLRGESA-PATAFGGAIVGGDN-----GRVSAVLMEQ-------GQ------LIWQQRISQPTGATEI  242 (394)
T ss_pred             EeeeecCCCCcccccCCCC-CEEECCEEEEEcCC-----CEEEEEEccC-------Ch------hhheeccccCCCccch
Confidence             4875432   1  22222 35568889985432     3577889988       43      2244210  0      


Q ss_pred             -----ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294          275 -----TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       275 -----~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                           ....-+..++.||+++.       .+.+-++|+.+++++|+..-..  ..  .+...+..|| ++..+|.|+.+|
T Consensus       243 ~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~~~--~~--~~~~~~~~vy-~~~~~g~l~ald  310 (394)
T PRK11138        243 DRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQIVWKREYGS--VN--DFAVDGGRIY-LVDQNDRVYALD  310 (394)
T ss_pred             hcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCEEEeecCCC--cc--CcEEECCEEE-EEcCCCeEEEEE
Confidence                 00111236899998663       3479999999999999874221  11  2344677888 566889999999


Q ss_pred             ccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC-CeEEEeEeeeecCCCCCCCCCcccceeeccccCcc
Q 012294          350 LRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG-GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRV  428 (466)
Q Consensus       350 lr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  428 (466)
                      +..-+  .-|   .. ++ ..   .+ .....++++|.||+... |.|.+...     ..       .+.+.|.+..   
T Consensus       311 ~~tG~--~~W---~~-~~-~~---~~-~~~sp~v~~g~l~v~~~~G~l~~ld~-----~t-------G~~~~~~~~~---  364 (394)
T PRK11138        311 TRGGV--ELW---SQ-SD-LL---HR-LLTAPVLYNGYLVVGDSEGYLHWINR-----ED-------GRFVAQQKVD---  364 (394)
T ss_pred             CCCCc--EEE---cc-cc-cC---CC-cccCCEEECCEEEEEeCCCEEEEEEC-----CC-------CCEEEEEEcC---
Confidence            97633  234   32 10 11   11 23345568999998744 44554332     11       2334443221   


Q ss_pred             ccCCCCceEEEeeecceeEEEeeccce
Q 012294          429 TDMGGSKITNLSFGGNKMFVTRKGQQT  455 (466)
Q Consensus       429 ~~~~~~~i~~~~~gg~r~f~~~~~~~~  455 (466)
                         ..+.-..-.+.|+||||.-.|-+.
T Consensus       365 ---~~~~~s~P~~~~~~l~v~t~~G~l  388 (394)
T PRK11138        365 ---SSGFLSEPVVADDKLLIQARDGTV  388 (394)
T ss_pred             ---CCcceeCCEEECCEEEEEeCCceE
Confidence               122334445668899998665443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.72  E-value=0.0054  Score=64.06  Aligned_cols=140  Identities=11%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI  302 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV  302 (466)
                      -++.++.||++..+     ..+-++|+.+       |+      ..|+.--......+..++.||+...       .+.+
T Consensus       252 P~v~~~~vy~~~~~-----g~l~ald~~t-------G~------~~W~~~~~~~~~~~~~~~~vy~~~~-------~g~l  306 (394)
T PRK11138        252 PVVVGGVVYALAYN-----GNLVALDLRS-------GQ------IVWKREYGSVNDFAVDGGRIYLVDQ-------NDRV  306 (394)
T ss_pred             cEEECCEEEEEEcC-----CeEEEEECCC-------CC------EEEeecCCCccCcEEECCEEEEEcC-------CCeE
Confidence            34678999994332     4678999999       54      3366422211223457899999764       4579


Q ss_pred             EEEeCCCCeeeeEEcCCcc-cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294          303 KFWDIRSGNVAWEVKDEVD-CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI  381 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~  381 (466)
                      -++|+.+++.+|+...... ..+...+  .++.|| ++..+|.|+++|...-+     +.+..  +. .   ..+.....
T Consensus       307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~-v~~~~G~l~~ld~~tG~-----~~~~~--~~-~---~~~~~s~P  372 (394)
T PRK11138        307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV-VGDSEGYLHWINREDGR-----FVAQQ--KV-D---SSGFLSEP  372 (394)
T ss_pred             EEEECCCCcEEEcccccCCCcccCCEE--ECCEEE-EEeCCCEEEEEECCCCC-----EEEEE--Ec-C---CCcceeCC
Confidence            9999999999998753321 1222222  466777 78899999999988733     22221  11 1   11234455


Q ss_pred             EEECCEEEEE-eCCeEEEeEe
Q 012294          382 ECHANQVFCG-KGGEIELWSE  401 (466)
Q Consensus       382 ~~~~~~lf~~-~~~~~~v~~~  401 (466)
                      +..+++||+. ++|.|-.+..
T Consensus       373 ~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        373 VVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEECCEEEEEeCCceEEEEeC
Confidence            5689999987 6666766553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.72  E-value=0.0062  Score=62.87  Aligned_cols=138  Identities=13%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI  302 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV  302 (466)
                      ..+.++.||++..     ...+-+||+++       |+      -.|..-......-+..++.||+...       .+.+
T Consensus       237 p~~~~~~vy~~~~-----~g~l~a~d~~t-------G~------~~W~~~~~~~~~p~~~~~~vyv~~~-------~G~l  291 (377)
T TIGR03300       237 PVVDGGQVYAVSY-----QGRVAALDLRS-------GR------VLWKRDASSYQGPAVDDNRLYVTDA-------DGVV  291 (377)
T ss_pred             cEEECCEEEEEEc-----CCEEEEEECCC-------Cc------EEEeeccCCccCceEeCCEEEEECC-------CCeE
Confidence            3456889999443     24688999998       44      2365422111122246899998753       4579


Q ss_pred             EEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294          303 KFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI  381 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~  381 (466)
                      .++|+.+++.+|+.... ....+...+  .+..|| ++..+|.|++.|.++-+  -.|. +.-     .   ..+.....
T Consensus       292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~-~~~~~G~l~~~d~~tG~--~~~~-~~~-----~---~~~~~~sp  357 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV-VGDFEGYLHWLSREDGS--FVAR-LKT-----D---GSGIASPP  357 (377)
T ss_pred             EEEECCCCcEEEccccccCCccccCEE--ECCEEE-EEeCCCEEEEEECCCCC--EEEE-EEc-----C---CCccccCC
Confidence            99999999999998432 222333333  456777 67799999999987744  2232 110     0   11134555


Q ss_pred             EEECCEEEEE-eCCeEEEe
Q 012294          382 ECHANQVFCG-KGGEIELW  399 (466)
Q Consensus       382 ~~~~~~lf~~-~~~~~~v~  399 (466)
                      +.+++.||+. ++|.|..|
T Consensus       358 ~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       358 VVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEECCEEEEEeCCceEEEe
Confidence            6777888865 55566544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.69  E-value=0.0093  Score=61.57  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=101.9

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      .++.+|+.+.   +|     .+.++|+.+.  .|+.-.+-+...+ .++.++.+|+|..     ...+.++|+.|     
T Consensus        64 ~~~~v~v~~~---~g-----~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~-----~g~l~ald~~t-----  124 (377)
T TIGR03300        64 AGGKVYAADA---DG-----TVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTE-----KGEVIALDAED-----  124 (377)
T ss_pred             ECCEEEEECC---CC-----eEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcC-----CCEEEEEECCC-----
Confidence            6777776654   22     4667787644  5874333222223 5667889999544     34789999998     


Q ss_pred             cccccccccCCceeecCccee--eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc-----cceeee
Q 012294          257 EIGQNEIYGTDIESAIPATKL--RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF-----SDVTVS  329 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~--~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~-----~~~~v~  329 (466)
                        |+      -.|+.-.....  .-+..++.+|+..+       .+.+.+||+++++++|+.......+     +...+.
T Consensus       125 --G~------~~W~~~~~~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~  189 (377)
T TIGR03300       125 --GK------ELWRAKLSSEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA  189 (377)
T ss_pred             --Cc------EeeeeccCceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE
Confidence              44      33654322111  11235788888643       4579999999999999986543211     122222


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccc-cccccceeEEEEECCEEEEEe-CCeEEEeE
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNG-KRKEGFGCKIECHANQVFCGK-GGEIELWS  400 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~-~~~~~~~~~~~~~~~~lf~~~-~~~~~v~~  400 (466)
                        +..+| ++..+|.|+..|+++-.  --|..--......+. .+..........+++.||++. ++.+-.|.
T Consensus       190 --~~~v~-~~~~~g~v~ald~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       190 --DGGVL-VGFAGGKLVALDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             --CCEEE-EECCCCEEEEEEccCCC--EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence              23444 67788999999998733  345431110000000 000001233445688888764 55555543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.0019  Score=66.30  Aligned_cols=227  Identities=15%  Similarity=0.139  Sum_probs=132.7

Q ss_pred             eecCCcEEEEcC--Cce-eeEe-------cCC-CCC-CCccccceeeeeecccCCcEEEEecccCC-----Cceecccee
Q 012294          139 TTNYGTLHVSHG--SKI-TSFD-------WSM-RKK-STILTHFTAVDSLLALSPGVAAAGATDFS-----GLQVLDLEN  201 (466)
Q Consensus       139 a~~~g~lyva~G--G~v-e~YD-------W~~-a~m-~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-----g~~~l~svE  201 (466)
                      +..++.+||..|  |.. -..|       |.. +.- ...|.....++    ++++||+.||  +.     -.+.++.+-
T Consensus        43 a~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~----~~~kLyvFgG--~Gk~~~~~~~~~nd~Y  116 (381)
T COG3055          43 ALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAV----IGGKLYVFGG--YGKSVSSSPQVFNDAY  116 (381)
T ss_pred             ceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchhee----eCCeEEEeec--cccCCCCCceEeeeeE
Confidence            445679998888  321 1223       988 543 45566655554    9999999999  53     235678888


Q ss_pred             eeeCCCCceeecCCC--CCceeEE-EEECC-eEEE-EecCC----------------------------------CcCCC
Q 012294          202 GYVKETLNWENVTRS--SSTVQAI-GSSDK-HLFV-SFESG----------------------------------RRNSN  242 (466)
Q Consensus       202 ~ydp~t~~W~~va~M--r~~~~Av-a~l~~-~IYa-Gg~~g----------------------------------~~~l~  242 (466)
                      +|||.+|+|+.+...  +-..++. +.+++ +||. ||.+-                                  .....
T Consensus       117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~  196 (381)
T COG3055         117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK  196 (381)
T ss_pred             EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence            999999999987654  3344433 45566 7888 77421                                  01134


Q ss_pred             eeEEEecCCCCccccccccccccCCceeecCcce------eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294          243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK------LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k------~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~  316 (466)
                      -|-.|||.+               +.|......+      ...+.-+|.|..+-|.=-|.-...-+-++|...+..-|.-
T Consensus       197 ev~sy~p~~---------------n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~  261 (381)
T COG3055         197 EVLSYDPST---------------NQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK  261 (381)
T ss_pred             ccccccccc---------------chhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence            677888888               4444433111      1122247767777664444322335888999999878887


Q ss_pred             cCC--------cccccceeeec-CCCceEEEEE---------eeCceeEee-ccccCC-------CCCeEEeccCCcccc
Q 012294          317 KDE--------VDCFSDVTVSD-NLSAIYKVGI---------NSGEVSYMD-LRKLGD-------SSEWICLGDGRKMVN  370 (466)
Q Consensus       317 ~~~--------~d~~~~~~v~~-~~~~i~~v~~---------~~g~l~~~d-lr~~~~-------~~~W~~~~~~~~~m~  370 (466)
                      ...        .+-.|..=.-- .+..||.-|.         +.|.+|.-+ |.+.=.       .+.|-.+++    |.
T Consensus       262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge----Lp  337 (381)
T COG3055         262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE----LP  337 (381)
T ss_pred             ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc----cC
Confidence            632        01111110001 2222222221         344544444 332211       567888877    44


Q ss_pred             ccccccceeEEEEECCEEEEEeC
Q 012294          371 GKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       371 ~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      .  .. +|-....+++.||+.-|
T Consensus       338 ~--~l-~YG~s~~~nn~vl~IGG  357 (381)
T COG3055         338 Q--GL-AYGVSLSYNNKVLLIGG  357 (381)
T ss_pred             C--Cc-cceEEEecCCcEEEEcc
Confidence            2  22 88888999999999887

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.59  E-value=0.00013  Score=53.71  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             eeEEEEECCeEEE-Eec---CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294          220 VQAIGSSDKHLFV-SFE---SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT  275 (466)
Q Consensus       220 ~~Ava~l~~~IYa-Gg~---~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~  275 (466)
                      ..++++++++||+ ||.   ......+.+++||++|               +.|+.+++|
T Consensus         4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t---------------~~W~~~~~~   48 (49)
T PF07646_consen    4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTET---------------NQWTELSPM   48 (49)
T ss_pred             ceEEEEECCEEEEECCcccCCCCcccceeEEEECCC---------------CEEeecCCC
Confidence            3447899999999 877   4445589999999999               678877665

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.58  E-value=0.042  Score=62.85  Aligned_cols=237  Identities=14%  Similarity=0.158  Sum_probs=125.0

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      +...|.|+  ++|.     +..||..+.+-...-.. ...+-+++..  ++.+++ |+.     ..+|-.||..+.+.+.
T Consensus       545 ~~~las~~--~Dg~-----v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        545 KSQVASSN--FEGV-----VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQGVSIG  612 (793)
T ss_pred             CCEEEEEe--CCCe-----EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCCCcEEE
Confidence            45677777  6653     55566655432111111 2333335554  455555 655     3578999998844333


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-eeeEEcCCcccccceeeecCCCce
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-VAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                      .+....          ....+.|..-++.++++|+.||      +|.+||.++.+ .+-.+..|......+... ++. .
T Consensus       613 ~~~~~~----------~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~  674 (793)
T PLN00181        613 TIKTKA----------NICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-T  674 (793)
T ss_pred             EEecCC----------CeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-E
Confidence            332210          1233455555678888888544      79999999876 345666676566666664 333 4


Q ss_pred             EEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCC
Q 012294          336 YKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       336 ~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~  413 (466)
                      +..++.+|.|-+-|++.-.....|.++..    ..+ ......+.-....++++++  .++.|-||..-...        
T Consensus       675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~g-h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~--------  741 (793)
T PLN00181        675 LVSSSTDNTLKLWDLSMSISGINETPLHS----FMG-HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM--------  741 (793)
T ss_pred             EEEEECCCEEEEEeCCCCccccCCcceEE----EcC-CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC--------
Confidence            55788999999999986432222333332    111 0000111112223444443  67899999753100        


Q ss_pred             Ccccceeec--cccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294          414 PLEERVFRK--NLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       414 ~~~~~~~r~--~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                      .+....+..  ...+...+.....|.++.+-++ .++++=.+...|.|||
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            000000000  0011112234456888877433 4566666677799997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.54  E-value=0.06  Score=51.97  Aligned_cols=230  Identities=14%  Similarity=0.097  Sum_probs=121.0

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccccc
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      .+|+.++  .++     .+-.||+.+.+....-+.......++..  ++.+|+++.    ..+.+..||+.+.+.+..+.
T Consensus        44 ~l~~~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        44 LLYVCAS--DSD-----TIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE----DDNLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             EEEEEEC--CCC-----eEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----CCCeEEEEECCCCeEEeEee
Confidence            3677766  332     3556777776654322221111113333  235887322    13578999998844443332


Q ss_pred             ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEE
Q 012294          260 QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVG  339 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~  339 (466)
                      ..          ..+..+.+.+ ++.+++++..++     ..+..||.++++++.+..... ....+..++++..||..+
T Consensus       113 ~~----------~~~~~~~~~~-dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       113 VG----------VEPEGMAVSP-DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQ-RPRFAEFTADGKELWVSS  175 (300)
T ss_pred             CC----------CCcceEEECC-CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCC-CccEEEECCCCCEEEEEc
Confidence            10          0123344544 444455554222     246778999988765543222 223467788998888766


Q ss_pred             EeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcc
Q 012294          340 INSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGK--GGEIELWSEIVMGSRKSREGGPLE  416 (466)
Q Consensus       340 ~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~  416 (466)
                      ..+|.+++.|+++.+...   .+....+.... .... .+..+.--+..+|++.  ++.|.||..-    ..     .  
T Consensus       176 ~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~----~~-----~--  240 (300)
T TIGR03866       176 EIGGTVSVIDVATRKVIK---KITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK----TY-----E--  240 (300)
T ss_pred             CCCCEEEEEEcCcceeee---eeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECC----CC-----c--
Confidence            689999999998744211   11110000000 0000 1222233345667753  4568888531    11     1  


Q ss_pred             cceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccCC
Q 012294          417 ERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       417 ~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                        + ++..      ..++.|..+++  .|.+|+++=.+...|-||+...
T Consensus       241 --~-~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       241 --V-LDYL------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             --E-EEEE------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence              1 1111      12345766666  8899998755566799998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.52  E-value=0.03  Score=56.19  Aligned_cols=187  Identities=18%  Similarity=0.239  Sum_probs=122.5

Q ss_pred             ccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-------CCceeEEEEECC-eEEE-EecCCCcCCCeeEEEe
Q 012294          178 ALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-------SSTVQAIGSSDK-HLFV-SFESGRRNSNSIMVYD  248 (466)
Q Consensus       178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-------r~~~~Ava~l~~-~IYa-Gg~~g~~~l~sVE~YD  248 (466)
                      .-+++..|.||  .+     |.+..|+..+..=....++       ..+....-.+++ +|.. +|      ..++--||
T Consensus       106 sPSg~~VAcGG--Ld-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalWD  172 (343)
T KOG0286|consen  106 SPSGNFVACGG--LD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALWD  172 (343)
T ss_pred             CCCCCeEEecC--cC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEEE
Confidence            36788999999  55     4567787665433333333       344443444544 5666 44      35788999


Q ss_pred             cCCCCccccccccc-cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294          249 INSLKPVNEIGQNE-IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT  327 (466)
Q Consensus       249 p~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~  327 (466)
                      .++       +++. .|.|..   .+.|.+...+.++..|++||-|.      +..+||.|++.+|=++.+|.--+-.+.
T Consensus       173 ie~-------g~~~~~f~GH~---gDV~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF~ghesDINsv~  236 (343)
T KOG0286|consen  173 IET-------GQQTQVFHGHT---GDVMSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTFEGHESDINSVR  236 (343)
T ss_pred             ccc-------ceEEEEecCCc---ccEEEEecCCCCCCeEEeccccc------ceeeeeccCcceeEeecccccccceEE
Confidence            999       5554 353332   35677777778999999999544      789999999999999999972222333


Q ss_pred             eecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEee
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEI  402 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~  402 (466)
                      .=++|.. |+-|+-++.--+-|||.-- +   +.+=+.. ..+.  +- ..+-...-|.-||+. .+..+.||--.
T Consensus       237 ffP~G~a-fatGSDD~tcRlyDlRaD~-~---~a~ys~~-~~~~--gi-tSv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  237 FFPSGDA-FATGSDDATCRLYDLRADQ-E---LAVYSHD-SIIC--GI-TSVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             EccCCCe-eeecCCCceeEEEeecCCc-E---EeeeccC-cccC--Cc-eeEEEcccccEEEeeecCCceeEeecc
Confidence            4456666 7788899999999999832 1   2221100 1121  11 555566677788884 78899999886

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=97.51  E-value=7.9e-05  Score=54.58  Aligned_cols=45  Identities=16%  Similarity=0.090  Sum_probs=28.3

Q ss_pred             ccccceeeeeeccc-CCcEEEEecccCCCc-eeccceeeeeCCCCceeecCCC
Q 012294          166 ILTHFTAVDSLLAL-SPGVAAAGATDFSGL-QVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       166 ~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~-~~l~svE~ydp~t~~W~~va~M  216 (466)
                      +|..|+++.    + ++.||++||  .+.. ..++.+..||+.+++|+.+++|
T Consensus         1 pR~~h~~~~----~~~~~i~v~GG--~~~~~~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen    1 PRYGHSAVS----IGDNSIYVFGG--RDSSGSPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             --BS-EEEE----E-TTEEEEE----EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred             CcceEEEEE----EeCCeEEEECC--CCCCCcccCCEEEEECCCCEEEECCCC
Confidence            477777665    6 589999999  5443 6899999999999999999776

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.46  E-value=0.039  Score=51.18  Aligned_cols=152  Identities=18%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             eeeeecccCC-cEEEEecccCCCceeccceeeeeCCCCceee-cCCCCCceeEEEEEC-CeEEE-EecCCCcCCCeeEEE
Q 012294          172 AVDSLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWEN-VTRSSSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVY  247 (466)
Q Consensus       172 ~v~sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~-va~Mr~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~Y  247 (466)
                      .+.++.+... .+++.|+  .+|     .+..||..+.+-.. .........+++... +.+.+ |..     ...+..|
T Consensus        95 ~i~~~~~~~~~~~~~~~~--~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~  162 (289)
T cd00200          95 YVSSVAFSPDGRILSSSS--RDK-----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLW  162 (289)
T ss_pred             cEEEEEEcCCCCEEEEec--CCC-----eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEE
Confidence            3444444544 5555555  344     34456665332211 111122233345554 34444 432     3578899


Q ss_pred             ecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT  327 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~  327 (466)
                      |..+.+++..+....         .....+.|.+-++.|++++.       .+.|.+||.++++.+-++..+......+.
T Consensus       163 d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  226 (289)
T cd00200         163 DLRTGKCVATLTGHT---------GEVNSVAFSPDGEKLLSSSS-------DGTIKLWDLSTGKCLGTLRGHENGVNSVA  226 (289)
T ss_pred             EccccccceeEecCc---------cccceEEECCCcCEEEEecC-------CCcEEEEECCCCceecchhhcCCceEEEE
Confidence            998755444433211         12334556554445555543       34799999999988877766665667777


Q ss_pred             eecCCCceEEEEEeeCceeEeeccc
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      .+++ +.++..+..+|.|.+.|++.
T Consensus       227 ~~~~-~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         227 FSPD-GYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             EcCC-CcEEEEEcCCCcEEEEEcCC
Confidence            8877 55665666799999999886

>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.26  E-value=0.00025  Score=70.88  Aligned_cols=81  Identities=14%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------C---ce--eEcCCchhHHHHhcccccCccccCCCCcC
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------T---HR--FIDRDPELFSILLSLLRTGNLPSKAKAFD   88 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~---~~--fiDRDp~~F~~IL~ylrtG~l~~~~~~~~   88 (466)
                      ..++|++-|.+.+|..++..|+. .|.+++..||..       +   +|  --+....+|+.||+|+.+|.+.. |+...
T Consensus        94 ~~~~~t~lvd~~rf~v~q~llt~-~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRC-P~~vS  171 (438)
T KOG3840|consen   94 EGDKVCLLVDQTRFLVSQRLLTS-KPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRC-PSSVS  171 (438)
T ss_pred             CCcceEEEeeeEEEEeeeeeecC-CcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeC-CCCCc
Confidence            36789999999999999999998 899999999974       2   23  23467789999999999999998 67899


Q ss_pred             hHHHHHhhccccchh
Q 012294           89 IEDLIEESKFYNIES  103 (466)
Q Consensus        89 ~~~Ll~EA~f~~l~~  103 (466)
                      +.+|.++++|+-|.-
T Consensus       172 vpELrEACDYLlipF  186 (438)
T KOG3840|consen  172 VSELREACDYLLVPF  186 (438)
T ss_pred             hHHHHhhcceEEeec
Confidence            999999999887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.26  E-value=0.022  Score=55.05  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI  307 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp  307 (466)
                      .+|+ ++.     .+.+.+||+.+.+++..+..     +.     .+..+.|.+-+..||++++.      .+.|..||.
T Consensus         2 ~~~~s~~~-----d~~v~~~d~~t~~~~~~~~~-----~~-----~~~~l~~~~dg~~l~~~~~~------~~~v~~~d~   60 (300)
T TIGR03866         2 KAYVSNEK-----DNTISVIDTATLEVTRTFPV-----GQ-----RPRGITLSKDGKLLYVCASD------SDTIQVIDL   60 (300)
T ss_pred             cEEEEecC-----CCEEEEEECCCCceEEEEEC-----CC-----CCCceEECCCCCEEEEEECC------CCeEEEEEC
Confidence            4666 433     35889999998554443322     11     12345566556678888763      347999999


Q ss_pred             CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .+++.+.+...+.+. ..+.+++++..+|..+..++.|.+.|++..
T Consensus        61 ~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~  105 (300)
T TIGR03866        61 ATGEVIGTLPSGPDP-ELFALHPNGKILYIANEDDNLVTVIDIETR  105 (300)
T ss_pred             CCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            999877665444332 456788899999988888899999999873

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00421 coronin; Provisional

Probab=97.22  E-value=0.051  Score=59.06  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             cceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCce-----eecCCC---CCceeEEEEEC--CeEEE-Eec
Q 012294          169 HFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNW-----ENVTRS---SSTVQAIGSSD--KHLFV-SFE  235 (466)
Q Consensus       169 ~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W-----~~va~M---r~~~~Ava~l~--~~IYa-Gg~  235 (466)
                      +-+.+.++.+-  ++.++|.|+  .++.     +-.||..+...     ..+..+   ...+..++...  +.+.+ |+.
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS--~Dgt-----IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTAS--EDGT-----IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEe--CCCE-----EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            33455555554  467788887  6653     34454433211     111112   23334345442  24555 654


Q ss_pred             CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          236 SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       236 ~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                           ..+|-.||.++.+.+..+...     ..    ....+.|.+ ++.++++|+.|      ++|.+||+|+++++.+
T Consensus       147 -----DgtVrIWDl~tg~~~~~l~~h-----~~----~V~sla~sp-dG~lLatgs~D------g~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        147 -----DMVVNVWDVERGKAVEVIKCH-----SD----QITSLEWNL-DGSLLCTTSKD------KKLNIIDPRDGTIVSS  205 (493)
T ss_pred             -----CCEEEEEECCCCeEEEEEcCC-----CC----ceEEEEEEC-CCCEEEEecCC------CEEEEEECCCCcEEEE
Confidence                 457899999985444333210     10    123456665 56677777744      4799999999999988


Q ss_pred             EcCCccc-ccceeeecCCCceEEEEE---eeCceeEeeccccC
Q 012294          316 VKDEVDC-FSDVTVSDNLSAIYKVGI---NSGEVSYMDLRKLG  354 (466)
Q Consensus       316 ~~~~~d~-~~~~~v~~~~~~i~~v~~---~~g~l~~~dlr~~~  354 (466)
                      ...|... ...+....++..|+.+|.   .++.+.+-|+|++.
T Consensus       206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            8777432 223344556677776653   47899999999876

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.13  E-value=0.0034  Score=66.89  Aligned_cols=147  Identities=14%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             CCCCCCCCCceeeecCCcEEEEcCCc----------eee-----Ee-----------cCC----CCCCCccccceeeeee
Q 012294          127 PLNGRDSPSAIATTNYGTLHVSHGSK----------ITS-----FD-----------WSM----RKKSTILTHFTAVDSL  176 (466)
Q Consensus       127 ~~~~R~~~~a~~a~~~g~lyva~GG~----------ve~-----YD-----------W~~----a~m~~~R~~~~~v~sl  176 (466)
                      +|.+|-.|+  -....+++| .+||.          +-+     |-           |..    ...+.+|-.|.++. -
T Consensus       133 pPCPRlGHS--Fsl~gnKcY-lFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAVi-Y  208 (830)
T KOG4152|consen  133 PPCPRLGHS--FSLVGNKCY-LFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVI-Y  208 (830)
T ss_pred             CCCCccCce--eEEeccEeE-EeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEE-E
Confidence            346777777  556678999 56763          111     22           764    45677888876664 1


Q ss_pred             ccc---CCcEEEEecccCCCceeccceeeeeCCCCceee-----cCCC-CCceeEEEEECCeEEE-EecCC---------
Q 012294          177 LAL---SPGVAAAGATDFSGLQVLDLENGYVKETLNWEN-----VTRS-SSTVQAIGSSDKHLFV-SFESG---------  237 (466)
Q Consensus       177 ~~l---~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~-----va~M-r~~~~Ava~l~~~IYa-Gg~~g---------  237 (466)
                      +..   ..++|+-||  ..|. .|...-..|.++.+|+.     ++|| |+.+. .++++|++|+ ||.-.         
T Consensus       209 ~eKDs~~skmvvyGG--M~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs-a~~IGnKMyvfGGWVPl~~~~~~~~  284 (830)
T KOG4152|consen  209 TEKDSKKSKMVVYGG--MSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS-ATTIGNKMYVFGGWVPLVMDDVKVA  284 (830)
T ss_pred             EeccCCcceEEEEcc--cccc-cccceeEEecceeecccccccCCCCCCccccc-ceeecceeEEecceeeeeccccccc
Confidence            112   357999999  8875 45666667899999975     4677 88877 6899999999 88421         


Q ss_pred             -----CcCCCeeEEEecCCCCccccccccccccCCceeecCc------------ceeeEEeeCCeEEEEeecCCCC
Q 012294          238 -----RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA------------TKLRWVSSYNLLLASGSHSDIS  296 (466)
Q Consensus       238 -----~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~------------~k~~~~~~~~~Lyv~Gg~~g~~  296 (466)
                           -.+.++.-|++..|               ..|..+-.            -..+-+..+.+||.=.|.||-.
T Consensus       285 ~hekEWkCTssl~clNldt---------------~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr  345 (830)
T KOG4152|consen  285 THEKEWKCTSSLACLNLDT---------------MAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR  345 (830)
T ss_pred             cccceeeeccceeeeeecc---------------hheeeeeeccccccccccccccceeEEeccEEEEEeccchhh
Confidence                 12357888888888               33433221            1122335899999999988843

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.13  E-value=0.08  Score=50.26  Aligned_cols=170  Identities=16%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             cCCcEEEE-cCCceeeEe-------cCCCCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCC--ce
Q 012294          141 NYGTLHVS-HGSKITSFD-------WSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETL--NW  210 (466)
Q Consensus       141 ~~g~lyva-~GG~ve~YD-------W~~a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W  210 (466)
                      .++.+|++ ..+.+.+||       |....-......  .+.    .++.+|+...  .+      .+-++|..+.  .|
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~----~~~~v~v~~~--~~------~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV----DGGRVYVGTS--DG------SLYALDAKTGKVLW  100 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE----ETTEEEEEET--TS------EEEEEETTTSCEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee----cccccccccc--ee------eeEecccCCcceee
Confidence            57888876 345677788       887221111121  232    6778877764  22      3455664443  68


Q ss_pred             e-ecCC-----CCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc---------
Q 012294          211 E-NVTR-----SSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT---------  275 (466)
Q Consensus       211 ~-~va~-----Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~---------  275 (466)
                      + ....     ..... +.++.++.+|++..     ...+-++|++|       |+..      |+.-..+         
T Consensus       101 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~g~l~~~d~~t-------G~~~------w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen  101 SIYLTSSPPAGVRSSS-SPAVDGDRLYVGTS-----SGKLVALDPKT-------GKLL------WKYPVGEPRGSSPISS  161 (238)
T ss_dssp             EEEE-SSCTCSTB--S-EEEEETTEEEEEET-----CSEEEEEETTT-------TEEE------EEEESSTT-SS--EEE
T ss_pred             eecccccccccccccc-CceEecCEEEEEec-----cCcEEEEecCC-------CcEE------EEeecCCCCCCcceee
Confidence            7 3322     11222 25666888998554     35788999999       4432      4432211         


Q ss_pred             ----eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          276 ----KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       276 ----k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                          .-..+..++.||++.....      .+.+ |.++++.+|+.. ..+  ........+..||... .+|.|+..|++
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~~g~------~~~~-d~~tg~~~w~~~-~~~--~~~~~~~~~~~l~~~~-~~~~l~~~d~~  230 (238)
T PF13360_consen  162 FSDINGSPVISDGRVYVSSGDGR------VVAV-DLATGEKLWSKP-ISG--IYSLPSVDGGTLYVTS-SDGRLYALDLK  230 (238)
T ss_dssp             ETTEEEEEECCTTEEEEECCTSS------EEEE-ETTTTEEEEEEC-SS---ECECEECCCTEEEEEE-TTTEEEEEETT
T ss_pred             ecccccceEEECCEEEEEcCCCe------EEEE-ECCCCCEEEEec-CCC--ccCCceeeCCEEEEEe-CCCEEEEEECC
Confidence                1223335679999887321      3666 999999999775 332  2222577888988666 89999999999


Q ss_pred             ccC
Q 012294          352 KLG  354 (466)
Q Consensus       352 ~~~  354 (466)
                      +-+
T Consensus       231 tG~  233 (238)
T PF13360_consen  231 TGK  233 (238)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            844

...

>smart00612 Kelch Kelch domain

Probab=97.09  E-value=0.00081  Score=47.71  Aligned_cols=32  Identities=9%  Similarity=0.254  Sum_probs=26.3

Q ss_pred             eEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          285 LLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       285 ~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      .||++||+++. .....|++|||++++  |+..++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~--W~~~~~   32 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNK--WTPLPS   32 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCe--EccCCC
Confidence            48999998763 346689999999999  998654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.03  E-value=0.0012  Score=48.45  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             CCcEEEEecccCC--CceeccceeeeeCCCCceeecCCC---CCcee
Q 012294          180 SPGVAAAGATDFS--GLQVLDLENGYVKETLNWENVTRS---SSTVQ  221 (466)
Q Consensus       180 ~~~lYaiGG~~~~--g~~~l~svE~ydp~t~~W~~va~M---r~~~~  221 (466)
                      +++||+.||  .+  +...++.+-.||+.+++|+.++++   |+.+.
T Consensus         1 g~~~~vfGG--~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~   45 (49)
T PF13415_consen    1 GNKLYVFGG--YDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHT   45 (49)
T ss_pred             CCEEEEECC--cCCCCCCEecCEEEEECCCCEEEECCCCCCCccceE
Confidence            468999999  55  677899999999999999999887   77665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.01  E-value=0.049  Score=62.28  Aligned_cols=151  Identities=14%  Similarity=0.285  Sum_probs=98.4

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+.|.+..+.+.++|+.||      +|.+||..+++.+.++.+|.+.+..+...+....++..|+.+|.+.+-|++...
T Consensus       536 ~~l~~~~~~~~~las~~~Dg------~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEG------VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCC------eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            34567665666777777544      899999999999999999987888888887666677789999999999998633


Q ss_pred             CCCCeEEeccCCccccccccccceeEEE--EECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294          355 DSSEWICLGDGRKMVNGKRKEGFGCKIE--CHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD  430 (466)
Q Consensus       355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~--~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  430 (466)
                      .      +..    ...  .. .-+.+.  ..+++++++  .++.|.+|.--    ..    +   ..+  ..+.+    
T Consensus       610 ~------~~~----~~~--~~-~v~~v~~~~~~g~~latgs~dg~I~iwD~~----~~----~---~~~--~~~~~----  659 (793)
T PLN00181        610 S------IGT----IKT--KA-NICCVQFPSESGRSLAFGSADHKVYYYDLR----NP----K---LPL--CTMIG----  659 (793)
T ss_pred             E------EEE----Eec--CC-CeEEEEEeCCCCCEEEEEeCCCeEEEEECC----CC----C---ccc--eEecC----
Confidence            1      221    111  11 111222  223444443  67889999742    11    0   000  11112    


Q ss_pred             CCCCceEEEeeecceeEEEeeccceEEEeccC
Q 012294          431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~  462 (466)
                       ..+.|+.+.|--+..+++=.....|-+|+..
T Consensus       660 -h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        660 -HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             -CCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence             3457888888655677777777789999864

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=96.93  E-value=0.00035  Score=72.30  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C-ce-eEcCCchhHHHHhcccccCccccCCC-----
Q 012294           19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T-HR-FIDRDPELFSILLSLLRTGNLPSKAK-----   85 (466)
Q Consensus        19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~-----   85 (466)
                      +..-.+|++-|..++|.+||..|+.  .++||++|+-+      + .+ +.+-+.++|+.+|.|+|||++.+..-     
T Consensus        41 ~e~y~DVtfvve~~rfpAHRvILAa--Rs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~l  118 (620)
T KOG4350|consen   41 SEDYSDVTFVVEDTRFPAHRVILAA--RSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDIL  118 (620)
T ss_pred             cCcccceEEEEeccccchhhhhHHH--HHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHH
Confidence            5556899999999999999999998  56799999864      1 23 77888999999999999999876421     


Q ss_pred             ----------------------------CcChHHHHHhhccccchhhHHhhc
Q 012294           86 ----------------------------AFDIEDLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        86 ----------------------------~~~~~~Ll~EA~f~~l~~l~~~~~  109 (466)
                                                  ..|+-++++.|.+|++.+|.+.|+
T Consensus       119 ld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~  170 (620)
T KOG4350|consen  119 LDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM  170 (620)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence                                        123444556777888888887773

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.87  E-value=0.62  Score=47.03  Aligned_cols=229  Identities=12%  Similarity=0.058  Sum_probs=117.8

Q ss_pred             ceeeeeCC-CCceeecCCC--CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC
Q 012294          199 LENGYVKE-TLNWENVTRS--SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP  273 (466)
Q Consensus       199 svE~ydp~-t~~W~~va~M--r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~  273 (466)
                      .+..|+.. ..+++.+...  ......++.. ++ .||++.+.    .++|-+||.++...+.+.-. . +.+    ...
T Consensus        58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~~~~~~~-~-~~~----~~~  127 (330)
T PRK11028         58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN----ANCVSVSPLDKDGIPVAPIQ-I-IEG----LEG  127 (330)
T ss_pred             cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC----CCeEEEEEECCCCCCCCcee-e-ccC----CCc
Confidence            34455554 3345433321  1122225555 23 58884331    46788898875211111000 0 000    011


Q ss_pred             cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-----eEE-cCCcccccceeeecCCCceEEEEEeeCceeE
Q 012294          274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-----WEV-KDEVDCFSDVTVSDNLSAIYKVGINSGEVSY  347 (466)
Q Consensus       274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-----W~~-~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~  347 (466)
                      +....+.+-+..|||+.-.      .+.|.+||..++..+     ... .+++..--.+++++++..+|++...++.|.+
T Consensus       128 ~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v  201 (330)
T PRK11028        128 CHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDV  201 (330)
T ss_pred             ccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence            2233344456788887762      348999999874321     111 1223333467889999999999888999999


Q ss_pred             eeccccCCCCCeEEecc---CCcccccccccc-ceeEEEEECCEEEEE-e-CCeEEEeEeeeecCCCCCCCCCcccceee
Q 012294          348 MDLRKLGDSSEWICLGD---GRKMVNGKRKEG-FGCKIECHANQVFCG-K-GGEIELWSEIVMGSRKSREGGPLEERVFR  421 (466)
Q Consensus       348 ~dlr~~~~~~~W~~~~~---~~~~m~~~~~~~-~~~~~~~~~~~lf~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~r  421 (466)
                      .|+....  +....+..   ....+..  ++- ....++--+.+||++ + .+.|.||.--    ..   ++  .-++..
T Consensus       202 ~~~~~~~--~~~~~~~~~~~~p~~~~~--~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~----~~---~~--~~~~~~  268 (330)
T PRK11028        202 WQLKDPH--GEIECVQTLDMMPADFSD--TRWAADIHITPDGRHLYACDRTASLISVFSVS----ED---GS--VLSFEG  268 (330)
T ss_pred             EEEeCCC--CCEEEEEEEecCCCcCCC--CccceeEEECCCCCEEEEecCCCCeEEEEEEe----CC---CC--eEEEeE
Confidence            9997422  12222221   1111111  110 122333445689998 3 4678888642    11   01  111212


Q ss_pred             ccccCccccCCCCceEEEeeecceeEEEeeccceEEEecc
Q 012294          422 KNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       422 ~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~  461 (466)
                      .-..+.     ...--.+.-.|.+|||+-...+.|.||+-
T Consensus       269 ~~~~~~-----~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        269 HQPTET-----QPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EEeccc-----cCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            111111     11112455679999999887899999964

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.83  E-value=0.25  Score=46.79  Aligned_cols=128  Identities=13%  Similarity=0.186  Sum_probs=76.2

Q ss_pred             CeeEEEecCCCCccccccccccccCCceeecCc--c--ee-eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294          242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA--T--KL-RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--~--k~-~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~  316 (466)
                      .+|.++|+.+       |+      ..|+.--.  .  .. .-+..++.||+..+       .+.+.+||+.+++++|+.
T Consensus         3 g~l~~~d~~t-------G~------~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~   62 (238)
T PF13360_consen    3 GTLSALDPRT-------GK------ELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRF   62 (238)
T ss_dssp             SEEEEEETTT-------TE------EEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEE
T ss_pred             CEEEEEECCC-------CC------EEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEe
Confidence            5788999988       44      34665221  1  11 12237899999843       457999999999999999


Q ss_pred             cCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE-EeccCCccccccccccceeEEEEECCEEEEEe-CC
Q 012294          317 KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI-CLGDGRKMVNGKRKEGFGCKIECHANQVFCGK-GG  394 (466)
Q Consensus       317 ~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~-~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~-~~  394 (466)
                      .-+......  ....++.||.+. .++.|+..|+++.+  -.|. +.... +..    ........+++++++|+.. ++
T Consensus        63 ~~~~~~~~~--~~~~~~~v~v~~-~~~~l~~~d~~tG~--~~W~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   63 DLPGPISGA--PVVDGGRVYVGT-SDGSLYALDAKTGK--VLWSIYLTSS-PPA----GVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             ECSSCGGSG--EEEETTEEEEEE-TTSEEEEEETTTSC--EEEEEEE-SS-CTC----STB--SEEEEETTEEEEEETCS
T ss_pred             eccccccce--eeeccccccccc-ceeeeEecccCCcc--eeeeeccccc-ccc----ccccccCceEecCEEEEEeccC
Confidence            865322222  355677777444 67789999988744  3565 33221 110    1013445555666676665 55


Q ss_pred             eEEEe
Q 012294          395 EIELW  399 (466)
Q Consensus       395 ~~~v~  399 (466)
                      .|-.+
T Consensus       133 ~l~~~  137 (238)
T PF13360_consen  133 KLVAL  137 (238)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            55333

...

>PTZ00420 coronin; Provisional

Probab=96.81  E-value=0.13  Score=56.87  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             cceeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCc--e----eecCCC---CCceeEEEEEC--CeEEE-Ee
Q 012294          169 HFTAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLN--W----ENVTRS---SSTVQAIGSSD--KHLFV-SF  234 (466)
Q Consensus       169 ~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W----~~va~M---r~~~~Ava~l~--~~IYa-Gg  234 (466)
                      +-+.+.++.+..  +.++|.|+  .+|.     +-.||..+..  -    ..+..+   ...+.+++...  ..+.+ |+
T Consensus        73 H~~~V~~lafsP~~~~lLASgS--~Dgt-----IrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGS--EDLT-----IRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEe--CCCe-----EEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            334566666653  56888888  6653     3344433210  0    001111   22333344443  24555 55


Q ss_pred             cCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeee
Q 012294          235 ESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW  314 (466)
Q Consensus       235 ~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW  314 (466)
                      .     ..+|-.||..+.+.+..+.+.          .....+.|.+ +|.++++++.|      +.|.+||+|+++++-
T Consensus       146 ~-----DgtIrIWDl~tg~~~~~i~~~----------~~V~Slswsp-dG~lLat~s~D------~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        146 F-----DSFVNIWDIENEKRAFQINMP----------KKLSSLKWNI-KGNLLSGTCVG------KHMHIIDPRKQEIAS  203 (568)
T ss_pred             C-----CCeEEEEECCCCcEEEEEecC----------CcEEEEEECC-CCCEEEEEecC------CEEEEEECCCCcEEE
Confidence            4     357899999984433333220          0134556665 55566777633      479999999999988


Q ss_pred             EEcCCcccccce-----eeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC
Q 012294          315 EVKDEVDCFSDV-----TVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA  385 (466)
Q Consensus       315 ~~~~~~d~~~~~-----~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~  385 (466)
                      ++..|...+...     +.+.++..|. .++.++    .+.+-|+|.++.     ++..    +..  ....++-+-.|+
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~-----pl~~----~~l--d~~~~~L~p~~D  271 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTS-----ALVT----MSI--DNASAPLIPHYD  271 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCC-----ceEE----EEe--cCCccceEEeee
Confidence            887774322111     1234556655 344443    699999998652     1111    110  111333334443


Q ss_pred             ---CEEEEE--eCCeEEEeEe
Q 012294          386 ---NQVFCG--KGGEIELWSE  401 (466)
Q Consensus       386 ---~~lf~~--~~~~~~v~~~  401 (466)
                         |++|++  .++.|.+|-=
T Consensus       272 ~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        272 ESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             CCCCCEEEEEECCCeEEEEEc
Confidence               888876  3666888853

>PTZ00421 coronin; Provisional

Probab=96.69  E-value=0.31  Score=53.01  Aligned_cols=157  Identities=13%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      .+.|.+..+.++++|+.|+      +|.+||.++++.+-++..|.+.+..+...+++.. +..|+.+|.|.+-|+|+...
T Consensus       130 ~l~f~P~~~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        130 IVSFHPSAMNVLASAGADM------VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             EEEeCcCCCCEEEEEeCCC------EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcE
Confidence            4567766666777887544      7999999999988888888888888889888765 45788999999999998441


Q ss_pred             CCCeEEeccCCccccccccccceeEEEEECCEEEEE-----eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-----KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD  430 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  430 (466)
                         -..+..   ...   .....+.-...++.++.+     .++.|.+|.--     .      +.+.+ ...-.+   .
T Consensus       203 ---v~tl~~---H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr-----~------~~~p~-~~~~~d---~  258 (493)
T PTZ00421        203 ---VSSVEA---HAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR-----K------MASPY-STVDLD---Q  258 (493)
T ss_pred             ---EEEEec---CCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC-----C------CCCce-eEeccC---C
Confidence               111111   000   000111111123455543     35679999742     1      01111 110001   1


Q ss_pred             CCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ...-.+..+...|+.|++.=+....|-+||...
T Consensus       259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            111123345667888888776667788887643

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=96.61  E-value=0.0023  Score=46.73  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CCceeEEEEE-CCeEEE-EecCCC-cCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294          217 SSTVQAIGSS-DKHLFV-SFESGR-RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT  275 (466)
Q Consensus       217 r~~~~Ava~l-~~~IYa-Gg~~g~-~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~  275 (466)
                      |..++ ++.+ ++.||+ ||.+.. ..++.+++||+++               +.|+.+++|
T Consensus         2 R~~h~-~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~---------------~~W~~~~~~   47 (49)
T PF13418_consen    2 RYGHS-AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET---------------NTWTRLPSM   47 (49)
T ss_dssp             -BS-E-EEEE-TTEEEEE--EEE-TEE---EEEEETTT---------------TEEEE--SS
T ss_pred             cceEE-EEEEeCCeEEEECCCCCCCcccCCEEEEECCC---------------CEEEECCCC
Confidence            45565 4555 689999 887554 4599999999999               678887654

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.56  E-value=0.04  Score=56.81  Aligned_cols=163  Identities=14%  Similarity=0.117  Sum_probs=106.4

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEEEECCeEEE-EecCC-----CcCCCeeEEEe
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSSDKHLFV-SFESG-----RRNSNSIMVYD  248 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l~~~IYa-Gg~~g-----~~~l~sVE~YD  248 (466)
                      +++.+|+.=|  ..|...+  ++--+-....|+.++.-    |..+. .++++++||+ ||..-     ...++.+.+||
T Consensus        45 ig~~~YVGLG--s~G~afy--~ldL~~~~k~W~~~a~FpG~~rnqa~-~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~  119 (381)
T COG3055          45 IGDTVYVGLG--SAGTAFY--VLDLKKPGKGWTKIADFPGGARNQAV-AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYD  119 (381)
T ss_pred             ecceEEEEec--cCCccce--ehhhhcCCCCceEcccCCCcccccch-heeeCCeEEEeeccccCCCCCceEeeeeEEec
Confidence            6778998777  4444322  22223345689999976    65555 6899999999 77522     12378999999


Q ss_pred             cCCCCccccccccccccCCceeecCcce---e---eEEeeCC-eEEEEeecCCC-----C--------------------
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATK---L---RWVSSYN-LLLASGSHSDI-----S--------------------  296 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k---~---~~~~~~~-~Lyv~Gg~~g~-----~--------------------  296 (466)
                      |.+               |+|...+..+   +   ....+++ .||..||.+-.     +                    
T Consensus       120 p~~---------------nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~y  184 (381)
T COG3055         120 PST---------------NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHY  184 (381)
T ss_pred             CCC---------------ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHH
Confidence            999               7888777332   2   2334556 99999996521     0                    


Q ss_pred             --------cccceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceEEEEEeeCceeEeeccccCC--------CCC
Q 012294          297 --------KVTGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--------SSE  358 (466)
Q Consensus       297 --------~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--------~~~  358 (466)
                              ..+..|=.|||.+++  |.....  --.+|+.++.-.++.   +-.-+|++. --||+.+.        .-+
T Consensus       185 f~~~~~dy~~n~ev~sy~p~~n~--W~~~G~~pf~~~aGsa~~~~~n~---~~lInGEiK-pGLRt~~~k~~~~~~~~~~  258 (381)
T COG3055         185 FDKKAEDYFFNKEVLSYDPSTNQ--WRNLGENPFYGNAGSAVVIKGNK---LTLINGEIK-PGLRTAEVKQADFGGDNLK  258 (381)
T ss_pred             hCCCHHHhcccccccccccccch--hhhcCcCcccCccCcceeecCCe---EEEEcceec-CCccccceeEEEeccCcee
Confidence                    013347789999999  998763  445677777777776   444556643 34677763        456


Q ss_pred             eEEeccCCc
Q 012294          359 WICLGDGRK  367 (466)
Q Consensus       359 W~~~~~~~~  367 (466)
                      |..+++-..
T Consensus       259 w~~l~~lp~  267 (381)
T COG3055         259 WLKLSDLPA  267 (381)
T ss_pred             eeeccCCCC
Confidence            888876443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.35  E-value=0.049  Score=57.71  Aligned_cols=135  Identities=21%  Similarity=0.349  Sum_probs=84.1

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECC-eEEE--EecCCCcCCCeeEEEecCCCC
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDK-HLFV--SFESGRRNSNSIMVYDINSLK  253 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~-~IYa--Gg~~g~~~l~sVE~YDp~t~~  253 (466)
                      .++.|.+-||  |||.     +-.||..+.+ +.+..+  -.-+.-|..+.+ .++|  |       -++|-+||..+  
T Consensus       164 ~~~hivvtGs--YDg~-----vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~--  226 (487)
T KOG0310|consen  164 ANDHIVVTGS--YDGK-----VRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTT--  226 (487)
T ss_pred             CCCeEEEecC--CCce-----EEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecC--
Confidence            6788999999  9984     6678877773 223333  122222444544 6666  4       35899999998  


Q ss_pred             cccccccccccc-CCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee--eEEcCCcccccceeeec
Q 012294          254 PVNEIGQNEIYG-TDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA--WEVKDEVDCFSDVTVSD  330 (466)
Q Consensus       254 ~~~~~~~~~~~~-~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v--W~~~~~~d~~~~~~v~~  330 (466)
                           |.|.... .+--+  ..+.+....-+-+|+..|       ..+.|..||.-+=++|  |.+.+|.   .++++++
T Consensus       227 -----G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~s-------LD~~VKVfd~t~~Kvv~s~~~~~pv---Lsiavs~  289 (487)
T KOG0310|consen  227 -----GGQLLTSMFNHNK--TVTCLRLASDSTRLLSGS-------LDRHVKVFDTTNYKVVHSWKYPGPV---LSIAVSP  289 (487)
T ss_pred             -----Cceehhhhhcccc--eEEEEEeecCCceEeecc-------cccceEEEEccceEEEEeeecccce---eeEEecC
Confidence                 4444210 00011  223333333344555444       3568999995555777  7776666   9999999


Q ss_pred             CCCceEEEEEeeCceeEe
Q 012294          331 NLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       331 ~~~~i~~v~~~~g~l~~~  348 (466)
                      ++..++ +|--||-|..-
T Consensus       290 dd~t~v-iGmsnGlv~~r  306 (487)
T KOG0310|consen  290 DDQTVV-IGMSNGLVSIR  306 (487)
T ss_pred             CCceEE-Eecccceeeee
Confidence            999976 78888886443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.27  E-value=0.16  Score=54.39  Aligned_cols=182  Identities=18%  Similarity=0.311  Sum_probs=113.9

Q ss_pred             CCeeEEEecCCC-Cc-cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          241 SNSIMVYDINSL-KP-VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       241 l~sVE~YDp~t~-~~-~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      ..++-.||.+.. .. ....||..          ....+.+.+.+ .++++|+.|+      +|++||.++++++-.+.+
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~----------~v~~~~f~p~g-~~i~Sgs~D~------tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHST----------YVTSVAFSPDG-NLLVSGSDDG------TVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCC----------ceEEEEecCCC-CEEEEecCCC------cEEEEeccCCeEEEeeec
Confidence            567889999441 11 12223311          12344555555 7888888544      899999999999999999


Q ss_pred             CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc---ceeEEEEECCEEEEEeCC-
Q 012294          319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG---FGCKIECHANQVFCGKGG-  394 (466)
Q Consensus       319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~---~~~~~~~~~~~lf~~~~~-  394 (466)
                      |.+....++..++++.|... .++|.|.+=|+.+....    ++..    +.. ....   +.+.-+=.+..|+++-.| 
T Consensus       287 hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~----~~~~----~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~  356 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKL----CLKL----LSG-AENSAPVTSVQFSPNGKYLLSASLDR  356 (456)
T ss_pred             cCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCcee----eeec----ccC-CCCCCceeEEEECCCCcEEEEecCCC
Confidence            99899999999999987644 77999999998885510    2222    111 0000   122222234555555555 


Q ss_pred             eEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCC
Q 012294          395 EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       395 ~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~  464 (466)
                      .|-+|.=              ......+.+.++..+. .....-+.+.+.+.+++=.+...|.+|..+..
T Consensus       357 ~~~~w~l--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  357 TLKLWDL--------------RSGKSVGTYTGHSNLV-RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             eEEEEEc--------------cCCcceeeecccCCcc-eeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            6766643              2222344455553331 12223334779999999999999999998754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.25  E-value=0.011  Score=60.79  Aligned_cols=84  Identities=20%  Similarity=0.405  Sum_probs=71.7

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI  307 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp  307 (466)
                      .|.| |+-+     ..|-.||..+++++..+-++.          +.+++.|+. ...||++.-       .+.|+.||.
T Consensus       299 pL~A~G~vd-----G~i~iyD~a~~~~R~~c~he~----------~V~~l~w~~-t~~l~t~c~-------~g~v~~wDa  355 (399)
T KOG0296|consen  299 PLAACGSVD-----GTIAIYDLAASTLRHICEHED----------GVTKLKWLN-TDYLLTACA-------NGKVRQWDA  355 (399)
T ss_pred             chhhccccc-----ceEEEEecccchhheeccCCC----------ceEEEEEcC-cchheeecc-------CceEEeeec
Confidence            3666 5543     467899999999999999866          578999998 788888775       678999999


Q ss_pred             CCCeeeeEEcCCcccccceeeecCCCce
Q 012294          308 RSGNVAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                      ||++.+-+..+|.+.+.+|++.++.+.|
T Consensus       356 RtG~l~~~y~GH~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  356 RTGQLKFTYTGHQMGILDFALSPQKRLV  383 (399)
T ss_pred             cccceEEEEecCchheeEEEEcCCCcEE
Confidence            9999999999999999999999988883

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.19  E-value=1.1  Score=43.42  Aligned_cols=213  Identities=17%  Similarity=0.172  Sum_probs=117.1

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      ++.||.+--  ..+     .+-++|+.+.+-....-. ...+ +++.  ++.+|++..      ..+-.+|+.+      
T Consensus        11 ~g~l~~~D~--~~~-----~i~~~~~~~~~~~~~~~~-~~~G-~~~~~~~g~l~v~~~------~~~~~~d~~~------   69 (246)
T PF08450_consen   11 DGRLYWVDI--PGG-----RIYRVDPDTGEVEVIDLP-GPNG-MAFDRPDGRLYVADS------GGIAVVDPDT------   69 (246)
T ss_dssp             TTEEEEEET--TTT-----EEEEEETTTTEEEEEESS-SEEE-EEEECTTSEEEEEET------TCEEEEETTT------
T ss_pred             CCEEEEEEc--CCC-----EEEEEECCCCeEEEEecC-CCce-EEEEccCCEEEEEEc------CceEEEecCC------
Confidence            567777754  322     355677777764433222 2233 5555  688998432      2345669888      


Q ss_pred             ccccccccCCceee--cC-cce---eeEEeeCCeEEEEeecCCCCccc--ceEEEEeCCCCeeeeEEcCCcccccceeee
Q 012294          258 IGQNEIYGTDIESA--IP-ATK---LRWVSSYNLLLASGSHSDISKVT--GNIKFWDIRSGNVAWEVKDEVDCFSDVTVS  329 (466)
Q Consensus       258 ~~~~~~~~~~~w~~--~~-~~k---~~~~~~~~~Lyv~Gg~~g~~~~~--~sVe~yDprt~~~vW~~~~~~d~~~~~~v~  329 (466)
                       ++.+.+    ...  .. +..   -..+.-+|.||+..-........  +.|-++|+. +++..-. +....--.++++
T Consensus        70 -g~~~~~----~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s  142 (246)
T PF08450_consen   70 -GKVTVL----ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFS  142 (246)
T ss_dssp             -TEEEEE----EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEE
T ss_pred             -CcEEEE----eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEEC
Confidence             322211    000  00 111   11333578899977644433223  679999999 5522211 112222467899


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCC----CCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEEEeEee
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGD----SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIELWSEI  402 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~  402 (466)
                      +++..||..-...+.|+..|+..-+.    ...+..+..         ..+.--.+++- .|.||++  .++.|.+++.-
T Consensus       143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             CcchheeecccccceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            99999999888999999999975332    111222222         00112234443 5899999  78888888641


Q ss_pred             eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec---ceeEEE
Q 012294          403 VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG---NKMFVT  449 (466)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~  449 (466)
                           .    + +-..+ +        -. ...+++++|||   ++||||
T Consensus       214 -----G----~-~~~~i-~--------~p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  214 -----G----K-LLREI-E--------LP-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -----S----C-EEEEE-E---------S-SSSEEEEEEESTTSSEEEEE
T ss_pred             -----c----c-EEEEE-c--------CC-CCCEEEEEEECCCCCEEEEE
Confidence                 1    1 11111 1        12 33799999986   559998

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.16  E-value=0.088  Score=57.73  Aligned_cols=192  Identities=18%  Similarity=0.218  Sum_probs=114.6

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEE---------eeCCeEEEEeecCCCCcc
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV---------SSYNLLLASGSHSDISKV  298 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~---------~~~~~Lyv~Gg~~g~~~~  298 (466)
                      .|+| ||.     .+.+-.|||.|       ..+            .||++-+         .-+|.=..+|+.      
T Consensus       184 t~ivsGgt-----ek~lr~wDprt-------~~k------------imkLrGHTdNVr~ll~~dDGt~~ls~sS------  233 (735)
T KOG0308|consen  184 TIIVSGGT-----EKDLRLWDPRT-------CKK------------IMKLRGHTDNVRVLLVNDDGTRLLSASS------  233 (735)
T ss_pred             eEEEecCc-----ccceEEecccc-------ccc------------eeeeeccccceEEEEEcCCCCeEeecCC------
Confidence            4777 443     68899999999       321            3555432         123333344443      


Q ss_pred             cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294          299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG  378 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~  378 (466)
                      .++|++||...-+|+=+..-|.+..=...++++-..+| -|+.+|.++..|||+-...   +.+.....+      - .-
T Consensus       234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY-sG~rd~~i~~Tdl~n~~~~---tlick~daP------v-~~  302 (735)
T KOG0308|consen  234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY-SGGRDGNIYRTDLRNPAKS---TLICKEDAP------V-LK  302 (735)
T ss_pred             CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE-ecCCCCcEEecccCCchhh---eEeecCCCc------h-hh
Confidence            45899999999988877777765555566778888888 7889999999999994211   334331111      1 22


Q ss_pred             eEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCc--cccC---CCCceEEEeeecceeEEEeec
Q 012294          379 CKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGR--VTDM---GGSKITNLSFGGNKMFVTRKG  452 (466)
Q Consensus       379 ~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~---~~~~i~~~~~gg~r~f~~~~~  452 (466)
                      ..+..+.++++++ ++++|+=|.......-..-+...+..+--+-+....  -+|+   +|..|++-+.=+||=-|+-+|
T Consensus       303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD  382 (735)
T KOG0308|consen  303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD  382 (735)
T ss_pred             hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec
Confidence            2334457888877 888999998764421110000011111112222221  1222   455899988888877666555


Q ss_pred             -cceEEEecc
Q 012294          453 -QQTVEVWQS  461 (466)
Q Consensus       453 -~~~~~vw~~  461 (466)
                       ...+-+|+-
T Consensus       383 a~gnv~lwDI  392 (735)
T KOG0308|consen  383 AKGNVALWDI  392 (735)
T ss_pred             CCCCEEEEEe
Confidence             455788863

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.16  Score=52.85  Aligned_cols=131  Identities=23%  Similarity=0.347  Sum_probs=86.0

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceee--cCcceee-----EE------ee-CCeEEEEeecC
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA--IPATKLR-----WV------SS-YNLLLASGSHS  293 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~--~~~~k~~-----~~------~~-~~~Lyv~Gg~~  293 (466)
                      .|.| ||.   ++.+-++.||.++       ++|.      |++  ++...|+     |.      +- .+.-||.+-  
T Consensus       162 ~Iva~GGk---e~~n~lkiwdle~-------~~qi------w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T--  223 (412)
T KOG3881|consen  162 YIVATGGK---ENINELKIWDLEQ-------SKQI------WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT--  223 (412)
T ss_pred             ceEecCch---hcccceeeeeccc-------ceee------eeccCCCCccccceeeeeeccceecCCCCCceEEEEe--
Confidence            4888 875   3368899999999       5332      443  2333222     33      21 133344333  


Q ss_pred             CCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccc
Q 012294          294 DISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGK  372 (466)
Q Consensus       294 g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~  372 (466)
                          -.+.|++||++.. ++|-++-=-..+.+.++..+++..|| ++-..|+|+..|+|+.-      -++.+-+..+  
T Consensus       224 ----~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy-~gn~~g~l~~FD~r~~k------l~g~~~kg~t--  290 (412)
T KOG3881|consen  224 ----RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY-TGNTKGQLAKFDLRGGK------LLGCGLKGIT--  290 (412)
T ss_pred             ----cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE-EecccchhheecccCce------eeccccCCcc--
Confidence                2447999999988 56655533355678888999999999 78899999999999844      1333233333  


Q ss_pred             ccccceeEEEEECC-EEEEEeC
Q 012294          373 RKEGFGCKIECHAN-QVFCGKG  393 (466)
Q Consensus       373 ~~~~~~~~~~~~~~-~lf~~~~  393 (466)
                         |+-..|+||.+ +|.++-|
T Consensus       291 ---Gsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  291 ---GSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             ---CCcceEEEcCCCceEEeec
Confidence               36668999998 6776654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.17  Score=58.34  Aligned_cols=187  Identities=16%  Similarity=0.225  Sum_probs=110.2

Q ss_pred             CCcEEEEcCC-ceeeEecCC-CCCCCc---cccceeeeeecccCC---cEEEEecccCCCceeccceeeeeCCCC-----
Q 012294          142 YGTLHVSHGS-KITSFDWSM-RKKSTI---LTHFTAVDSLLALSP---GVAAAGATDFSGLQVLDLENGYVKETL-----  208 (466)
Q Consensus       142 ~g~lyva~GG-~ve~YDW~~-a~m~~~---R~~~~~v~sl~~l~~---~lYaiGG~~~~g~~~l~svE~ydp~t~-----  208 (466)
                      ...+++|-+- .+..|||.. ...+..   -.....|+++..+|+   .+..++.  .+|.     +..|++..+     
T Consensus      1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--~dGv-----IRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS--SDGV-----IRIWKDYADKWKKP 1148 (1387)
T ss_pred             CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec--cCce-----EEEecccccccCCc
Confidence            4566655332 356788876 332211   112234445555554   5667766  6664     334433333     


Q ss_pred             ----ceeecCCC---CCceeEEEEE---CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee
Q 012294          209 ----NWENVTRS---SSTVQAIGSS---DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR  278 (466)
Q Consensus       209 ----~W~~va~M---r~~~~Ava~l---~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~  278 (466)
                          .|+.+..|   -+..++++.-   .|+||++|+     ..+|-+||.++-+.++.|.-..    +  +  -++.+.
T Consensus      1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~~~~diP~~s----~--t--~vTaLS 1215 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQVVADIPYGS----S--T--LVTALS 1215 (1387)
T ss_pred             eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccceeEeecccCC----C--c--cceeec
Confidence                47777777   2333335443   468999655     4689999999955555555422    1  1  122333


Q ss_pred             EEeeCCeEEEEeecCCCCcccceEEEEeCCCCe---eeeEEcCCccc--ccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN---VAWEVKDEVDC--FSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~---~vW~~~~~~d~--~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .-..+|-++|+|=-||      +|++||-|...   .|=.+++|.|.  +..+.+-+.|-.=-+-|+++|++++.|||+-
T Consensus      1216 ~~~~~gn~i~AGfaDG------svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADG------SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ccccCCceEEEeecCC------ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            2234567777776444      79999987753   46666667655  6666666655542235669999999999995


Q ss_pred             C
Q 012294          354 G  354 (466)
Q Consensus       354 ~  354 (466)
                      .
T Consensus      1290 ~ 1290 (1387)
T KOG1517|consen 1290 S 1290 (1387)
T ss_pred             c
Confidence            4

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.81  E-value=0.39  Score=51.95  Aligned_cols=148  Identities=13%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCC--CceeecCCC---C----CceeEEEEEC-CeEEEEecCCCcCCCeeEEEe
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKET--LNWENVTRS---S----STVQAIGSSD-KHLFVSFESGRRNSNSIMVYD  248 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t--~~W~~va~M---r----~~~~Ava~l~-~~IYaGg~~g~~~l~sVE~YD  248 (466)
                      .++.+|+...  ..      .+.++|+.+  ..|+.-...   +    ....++++.+ +.||+|..     ...|-++|
T Consensus        60 ~~g~vy~~~~--~g------~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-----~g~v~AlD  126 (488)
T cd00216          60 VDGDMYFTTS--HS------ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-----DGRLVALD  126 (488)
T ss_pred             ECCEEEEeCC--CC------cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----CCeEEEEE
Confidence            7888888765  32      344555553  357643221   0    0111245566 89999543     35788999


Q ss_pred             cCCCCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCCC---cccceEEEEeCCCCeeeeEEc
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDIS---KVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~~---~~~~sVe~yDprt~~~vW~~~  317 (466)
                      ++|       |+.      .|+.-....        -.-...++++|+.. .++..   +..+.+-++|..|++.+|...
T Consensus       127 ~~T-------G~~------~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~-~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         127 AET-------GKQ------VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGS-SGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCC-------CCE------eeeecCCCCcCcceEecCCCEEECCEEEEec-cccccccCCCCcEEEEEECCCCceeeEee
Confidence            999       553      365433221        11123567777643 22211   245689999999999999874


Q ss_pred             CC-cc--------------------cccceeeecCCCceEEEEEee------------------CceeEeeccccC
Q 012294          318 DE-VD--------------------CFSDVTVSDNLSAIYKVGINS------------------GEVSYMDLRKLG  354 (466)
Q Consensus       318 ~~-~d--------------------~~~~~~v~~~~~~i~~v~~~~------------------g~l~~~dlr~~~  354 (466)
                      -. .+                    .-+...+++.+..|| |+..+                  +.|+.+|+.+-+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         193 TTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             ccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            31 10                    012345566777888 44433                  379999998755

The alignment model contains an 8-bladed beta-propeller.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=95.80  E-value=0.45  Score=49.23  Aligned_cols=210  Identities=19%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             eeeeeCCCCceeecCC-CCCceeEEEEECCeEEE--EecCCCcCCCeeEEEecCCCCccccc-cccccccCCceeecCcc
Q 012294          200 ENGYVKETLNWENVTR-SSSTVQAIGSSDKHLFV--SFESGRRNSNSIMVYDINSLKPVNEI-GQNEIYGTDIESAIPAT  275 (466)
Q Consensus       200 vE~ydp~t~~W~~va~-Mr~~~~Ava~l~~~IYa--Gg~~g~~~l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~  275 (466)
                      ...+|..+.+=..--+ .-..+-++++.+-+=|.  .|+     .+.|-|||.+.++.+.+- ||-.          +..
T Consensus       175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge-----dk~VKCwDLe~nkvIR~YhGHlS----------~V~  239 (460)
T KOG0285|consen  175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE-----DKQVKCWDLEYNKVIRHYHGHLS----------GVY  239 (460)
T ss_pred             eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC-----CCeeEEEechhhhhHHHhccccc----------eeE
Confidence            4445555554221111 13344457888877666  444     467999999995544332 2211          122


Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      .+..++..++| +.||      ..+++++||.||...|=.+.+|....+++-..+-+..|| -|++++++-+=|||-...
T Consensus       240 ~L~lhPTldvl-~t~g------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt  311 (460)
T KOG0285|consen  240 CLDLHPTLDVL-VTGG------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT  311 (460)
T ss_pred             EEeccccceeE-EecC------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce
Confidence            23333444444 4444      356899999999999999999977778887777777766 688999999999998442


Q ss_pred             CCCeEEeccCCccccccccccceeEEEEE-CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGG  433 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  433 (466)
                           .+.-    .+.  +. +--.++.| .-.+|+| --|+++-|.              +.++.|=.|+-|+     .
T Consensus       312 -----~~tl----t~h--kk-svral~lhP~e~~fASas~dnik~w~--------------~p~g~f~~nlsgh-----~  360 (460)
T KOG0285|consen  312 -----MITL----THH--KK-SVRALCLHPKENLFASASPDNIKQWK--------------LPEGEFLQNLSGH-----N  360 (460)
T ss_pred             -----eEee----ecc--cc-eeeEEecCCchhhhhccCCccceecc--------------CCccchhhccccc-----c
Confidence                 1111    111  11 00011111 1257777 445665554              4455555554444     6


Q ss_pred             CceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          434 SKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       434 ~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      +-|-.+++--|-..++=.|.-++--|+.-.
T Consensus       361 ~iintl~~nsD~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             ceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence            678889988888888888888888887543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.29  Score=51.83  Aligned_cols=122  Identities=22%  Similarity=0.336  Sum_probs=85.2

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC  361 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~  361 (466)
                      .+.+||-++-       ..+|.+||.-.+.+.-+..-|. ....+++|+....+| ||...|.+|..+|-.+.+      
T Consensus       187 ~~~rl~TaS~-------D~t~k~wdlS~g~LLlti~fp~-si~av~lDpae~~~y-iGt~~G~I~~~~~~~~~~------  251 (476)
T KOG0646|consen  187 TNARLYTASE-------DRTIKLWDLSLGVLLLTITFPS-SIKAVALDPAERVVY-IGTEEGKIFQNLLFKLSG------  251 (476)
T ss_pred             ccceEEEecC-------CceEEEEEeccceeeEEEecCC-cceeEEEcccccEEE-ecCCcceEEeeehhcCCc------
Confidence            3556776664       5689999999999888877664 456788999999999 899999999988877653      


Q ss_pred             eccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee
Q 012294          362 LGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF  441 (466)
Q Consensus       362 ~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~  441 (466)
                       -+    +..        .          .|+                    .-.+..-+++++|+   +.+..|+-+++
T Consensus       252 -~~----~~v--------~----------~k~--------------------~~~~~t~~~~~~Gh---~~~~~ITcLai  285 (476)
T KOG0646|consen  252 -QS----AGV--------N----------QKG--------------------RHEENTQINVLVGH---ENESAITCLAI  285 (476)
T ss_pred             -cc----ccc--------c----------ccc--------------------cccccceeeeeccc---cCCcceeEEEE
Confidence             01    111        0          011                    01222247778887   45568998877


Q ss_pred             ecc-eeEEEeeccceEEEeccCCC
Q 012294          442 GGN-KMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       442 gg~-r~f~~~~~~~~~~vw~~~~~  464 (466)
                      -=| -|-++=.+...|-|||..+.
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchH
Confidence            544 46677788888999998764

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.70  E-value=0.11  Score=55.68  Aligned_cols=202  Identities=16%  Similarity=0.127  Sum_probs=110.8

Q ss_pred             CCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-Ee
Q 012294          162 KKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SF  234 (466)
Q Consensus       162 ~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg  234 (466)
                      +.+.+|..|-+++    +...|.+.||  -+ ....+....|+..+|+|.-.+--      .+.++ .+..+.+||+ ||
T Consensus        28 PvPrpRHGHRAVa----ikELiviFGG--GN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~G-fvcdGtrilvFGG   99 (830)
T KOG4152|consen   28 PVPRPRHGHRAVA----IKELIVIFGG--GN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG-FVCDGTRILVFGG   99 (830)
T ss_pred             CCCCccccchhee----eeeeEEEecC--Cc-ccchhhhhhhccccceeecchhcCCCCCchhhcc-eEecCceEEEEcc
Confidence            4556778887777    9999999998  22 23467788999999999854421      23334 4556668999 77


Q ss_pred             cCCCcCCCeeEEEecCCCCccccccccccccCCceeecC------------cceeeEEeeCCeEEEEeecCCCC------
Q 012294          235 ESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP------------ATKLRWVSSYNLLLASGSHSDIS------  296 (466)
Q Consensus       235 ~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~------------~~k~~~~~~~~~Lyv~Gg~~g~~------  296 (466)
                      --... -.+=+-|....       .+|+      |+.+.            -........+|+-|+-||-..-.      
T Consensus       100 MvEYG-kYsNdLYELQa-------sRWe------Wkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN  165 (830)
T KOG4152|consen  100 MVEYG-KYSNDLYELQA-------SRWE------WKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN  165 (830)
T ss_pred             Eeeec-cccchHHHhhh-------hhhh------HhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence            31111 22334555554       3333      44332            22334556889999999943221      


Q ss_pred             --cccceEEEEeCC--CCeeeeEEcCC-----cccccceee--ec---CCCceEEEEEee----CceeEeeccccCCCCC
Q 012294          297 --KVTGNIKFWDIR--SGNVAWEVKDE-----VDCFSDVTV--SD---NLSAIYKVGINS----GEVSYMDLRKLGDSSE  358 (466)
Q Consensus       297 --~~~~sVe~yDpr--t~~~vW~~~~~-----~d~~~~~~v--~~---~~~~i~~v~~~~----g~l~~~dlr~~~~~~~  358 (466)
                        .|++.....+.+  ++-+.|+.---     --+-+.-+|  .+   .-+.+|+-|+.+    |+|...||..+-    
T Consensus       166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~----  241 (830)
T KOG4152|consen  166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLT----  241 (830)
T ss_pred             cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceee----
Confidence              245544444444  55666886311     111111111  12   235566666644    578888887764    


Q ss_pred             eEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          359 WICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       359 W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      |...+-.  ...- .+| +=+.....+|..|+..|
T Consensus       242 W~kp~~~--G~~P-lPR-SLHsa~~IGnKMyvfGG  272 (830)
T KOG4152|consen  242 WNKPSLS--GVAP-LPR-SLHSATTIGNKMYVFGG  272 (830)
T ss_pred             ccccccc--CCCC-CCc-ccccceeecceeEEecc
Confidence            4332211  1111 244 44555555666665544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.67  E-value=0.11  Score=55.09  Aligned_cols=154  Identities=19%  Similarity=0.311  Sum_probs=103.9

Q ss_pred             CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-eEEeeCCeEEEEeecC
Q 012294          217 SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-RWVSSYNLLLASGSHS  293 (466)
Q Consensus       217 r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-~~~~~~~~Lyv~Gg~~  293 (466)
                      +..+.++.+- ||+|.| |...     .-|-+||..+-.++..|..      .+    +|.+. ...+-+|.+++.|+  
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~a------h~----apv~~~~f~~~d~t~l~s~s--  130 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYA------HQ----APVHVTKFSPQDNTMLVSGS--  130 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhh------cc----CceeEEEecccCCeEEEecC--
Confidence            3344434543 688999 6653     4588999444111122211      11    34443 35567889999988  


Q ss_pred             CCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccc
Q 012294          294 DISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKR  373 (466)
Q Consensus       294 g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~  373 (466)
                          +...+..||..+..++-+..+|.|-.=-.++.+-+..|+.=|++||.+-.-|+|+..   +|+  -+    .|.-.
T Consensus       131 ----Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v--~e----lnhg~  197 (487)
T KOG0310|consen  131 ----DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRV--VE----LNHGC  197 (487)
T ss_pred             ----CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---cee--EE----ecCCC
Confidence                344799999999998889999977776677888999999999999999999999964   343  23    33201


Q ss_pred             cccceeEEEEECCEEEEE-eCCeEEEeEee
Q 012294          374 KEGFGCKIECHANQVFCG-KGGEIELWSEI  402 (466)
Q Consensus       374 ~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~  402 (466)
                      |  --..++.-.|+++++ -|.+|.||-=.
T Consensus       198 p--Ve~vl~lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  198 P--VESVLALPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             c--eeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence            1  234556666678877 66689999765

>PTZ00420 coronin; Provisional

Probab=95.59  E-value=1.2  Score=49.45  Aligned_cols=72  Identities=14%  Similarity=0.246  Sum_probs=56.0

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+.|.+....++++|+.|+      +|.+||.++++.+.+.. +.+.+..+..+.++..| ..+..++.|.+.|+|+..
T Consensus       129 ~sVaf~P~g~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDS------FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCC------eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE-EEEecCCEEEEEECCCCc
Confidence            45678877777888888554      79999999999888774 44566778888887754 566689999999999854

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.43  E-value=0.038  Score=57.61  Aligned_cols=148  Identities=16%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             eecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCc---eeEEE-EECCeEEEEecCCCcCCCeeEEEe
Q 012294          175 SLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SST---VQAIG-SSDKHLFVSFESGRRNSNSIMVYD  248 (466)
Q Consensus       175 sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~---~~Ava-~l~~~IYaGg~~g~~~l~sVE~YD  248 (466)
                      .+-+.++..++|.|  ..|-    .+..++|..|.    ..|  +..   +-.++ .-++..|+++.+    .++|.+||
T Consensus       143 ~m~ws~~g~wmiSg--D~gG----~iKyWqpnmnn----Vk~~~ahh~eaIRdlafSpnDskF~t~Sd----Dg~ikiWd  208 (464)
T KOG0284|consen  143 TMKWSHNGTWMISG--DKGG----MIKYWQPNMNN----VKIIQAHHAEAIRDLAFSPNDSKFLTCSD----DGTIKIWD  208 (464)
T ss_pred             eEEEccCCCEEEEc--CCCc----eEEecccchhh----hHHhhHhhhhhhheeccCCCCceeEEecC----CCeEEEEe
Confidence            34457888899998  5443    24444555442    111  111   00122 236678884432    57899999


Q ss_pred             cCCCCcccccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294          249 INSLKPVNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT  327 (466)
Q Consensus       249 p~t~~~~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~  327 (466)
                      -..       .+++. ..|.+|-   +..+.|++..++|.+ ||-      .+.|.+|||||++|+=+...|..++..+-
T Consensus       209 f~~-------~kee~vL~GHgwd---VksvdWHP~kgLias-gsk------DnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  209 FRM-------PKEERVLRGHGWD---VKSVDWHPTKGLIAS-GSK------DNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             ccC-------CchhheeccCCCC---cceeccCCccceeEE-ccC------CceeEeecCCCcchhhhhhhccceEEEEE
Confidence            887       44432 1467775   456789998887654 442      33799999999999999999988888888


Q ss_pred             eecCCCceEEEEEeeCceeEeeccccC
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ....++.|- -+++|-.+-|.|+|++.
T Consensus       272 f~~n~N~Ll-t~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  272 FNPNGNWLL-TGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             EcCCCCeeE-EccCCceEEEEehhHhH
Confidence            888886644 56788899999999665

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.28  E-value=1.6  Score=47.28  Aligned_cols=194  Identities=15%  Similarity=0.135  Sum_probs=101.1

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccccceeee-eecccC-CcEEEEecccCCCceeccceeeeeCCC
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILTHFTAVD-SLLALS-PGVAAAGATDFSGLQVLDLENGYVKET  207 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~~~~~v~-sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t  207 (466)
                      ++.++.+|+... |.+..+|       |.. ......+.....+. .+.+.+ +.+|+...   +|     .+-++|+.+
T Consensus        58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g-----~v~AlD~~T  129 (488)
T cd00216          58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DG-----RLVALDAET  129 (488)
T ss_pred             EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CC-----eEEEEECCC
Confidence            345888885533 5667777       876 32221111100000 011245 67775433   22     344556653


Q ss_pred             --CceeecCCCC------CceeEEEEECCeEEEEecCCC----cCCCeeEEEecCCCCccccccccccccCCceeecCc-
Q 012294          208 --LNWENVTRSS------STVQAIGSSDKHLFVSFESGR----RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA-  274 (466)
Q Consensus       208 --~~W~~va~Mr------~~~~Ava~l~~~IYaGg~~g~----~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-  274 (466)
                        ..|..-..-.      ... +.++.++.+|+|..++.    .....+-++|.+|       |++.      |+.-.. 
T Consensus       130 G~~~W~~~~~~~~~~~~~i~s-sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-------G~~~------W~~~~~~  195 (488)
T cd00216         130 GKQVWKFGNNDQVPPGYTMTG-APTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-------GKLL------WRFYTTE  195 (488)
T ss_pred             CCEeeeecCCCCcCcceEecC-CCEEECCEEEEeccccccccCCCCcEEEEEECCC-------Ccee------eEeeccC
Confidence              4576543321      122 24667888998432221    1246789999999       4422      432110 


Q ss_pred             -------------------ceeeEE-----eeCCeEEEEeecCC-----------CCcccceEEEEeCCCCeeeeEEcCC
Q 012294          275 -------------------TKLRWV-----SSYNLLLASGSHSD-----------ISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       275 -------------------~k~~~~-----~~~~~Lyv~Gg~~g-----------~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                                         ....|.     ...+++|+..+...           +..+.++|-.+|..+++++|+....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~  275 (488)
T cd00216         196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT  275 (488)
T ss_pred             CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence                               001111     13688998776321           1223458999999999999997422


Q ss_pred             -c-----ccccceeee----cCCCc--eEEEEEeeCceeEeeccccC
Q 012294          320 -V-----DCFSDVTVS----DNLSA--IYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       320 -~-----d~~~~~~v~----~~~~~--i~~v~~~~g~l~~~dlr~~~  354 (466)
                       .     +..+...+.    .++..  +..++.++|.|+.+|+++-+
T Consensus       276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence             1     122221221    23332  22245589999999999854

The alignment model contains an 8-bladed beta-propeller.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.28  E-value=2.3  Score=44.41  Aligned_cols=115  Identities=9%  Similarity=-0.026  Sum_probs=77.7

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecC--CCCc-ccceEEEEeCCCCeeeeEEc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHS--DISK-VTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~--g~~~-~~~sVe~yDprt~~~vW~~~  317 (466)
                      .++|-++|..+++.+..+..-.         .+..  ...+-+..||++..+-  +..+ ..+.|++||+.|.+++.+..
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~---------~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~   94 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGF---------LPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE   94 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccC---------CCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence            3789999999966555554311         0111  1224567899988731  1111 34589999999999999997


Q ss_pred             CCcccc-------cceeeecCCCceEEEEEe-eCceeEeeccccCC-------CCCeEEeccCC
Q 012294          318 DEVDCF-------SDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLGD-------SSEWICLGDGR  366 (466)
Q Consensus       318 ~~~d~~-------~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~~-------~~~W~~~~~~~  366 (466)
                      -+.+++       ..++++++|..||+.--. +..|.++|+.+-.-       ...+++..+..
T Consensus        95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~  158 (352)
T TIGR02658        95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND  158 (352)
T ss_pred             cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC
Confidence            665544       267899999999976654 78899999987542       44566665433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.98  E-value=0.46  Score=50.20  Aligned_cols=135  Identities=20%  Similarity=0.409  Sum_probs=92.7

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC---CCeeeeEEc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR---SGNVAWEVK  317 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr---t~~~vW~~~  317 (466)
                      .++|-.||..+-+|...|-+..    .     ..-++.|++........|++|+      +|.++|-|   .-..-|.+.
T Consensus       265 D~TV~lWD~~~g~p~~s~~~~~----k-----~Vq~l~wh~~~p~~LLsGs~D~------~V~l~D~R~~~~s~~~wk~~  329 (463)
T KOG0270|consen  265 DKTVKLWDVDTGKPKSSITHHG----K-----KVQTLEWHPYEPSVLLSGSYDG------TVALKDCRDPSNSGKEWKFD  329 (463)
T ss_pred             CceEEEEEcCCCCcceehhhcC----C-----ceeEEEecCCCceEEEeccccc------eEEeeeccCccccCceEEec
Confidence            6899999999988777777533    1     2345789999999999998555      79999988   333348886


Q ss_pred             CCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEE--EEeCCe
Q 012294          318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVF--CGKGGE  395 (466)
Q Consensus       318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf--~~~~~~  395 (466)
                      +-.   =.++...-.-..|.++..+|.||-.|+|+.+ .--|.--+.....        ++..+-...--+.  ++..+.
T Consensus       330 g~V---Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~I--------Sgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  330 GEV---EKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEI--------SGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             cce---EEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCc--------ceEEecCCCCcceeeccccce
Confidence            554   4455677777778788899999999999998 4456644441111        3333322222222  345678


Q ss_pred             EEEeEee
Q 012294          396 IELWSEI  402 (466)
Q Consensus       396 ~~v~~~~  402 (466)
                      |.||.=.
T Consensus       398 Vklw~~~  404 (463)
T KOG0270|consen  398 VKLWKFD  404 (463)
T ss_pred             EEEEeec
Confidence            8999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.89  E-value=0.083  Score=54.49  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             eeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccc
Q 012294          243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDC  322 (466)
Q Consensus       243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~  322 (466)
                      .|+.||+....|++.|.-..    |.     -..+..-+..--|.++++.|      .+|-+||.|+++++-..+-.  .
T Consensus       168 ~i~IWD~~R~~Pv~smswG~----Dt-----i~svkfNpvETsILas~~sD------rsIvLyD~R~~~Pl~KVi~~--m  230 (433)
T KOG0268|consen  168 QIDIWDEQRDNPVSSMSWGA----DS-----ISSVKFNPVETSILASCASD------RSIVLYDLRQASPLKKVILT--M  230 (433)
T ss_pred             eeeecccccCCccceeecCC----Cc-----eeEEecCCCcchheeeeccC------CceEEEecccCCccceeeee--c
Confidence            58999999988888887422    21     11222334555677777743      47999999999877554311  0


Q ss_pred             c-cceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          323 F-SDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       323 ~-~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      + -.+.-.+ ..-.|.++..+-+||+-|||.|.+
T Consensus       231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  231 RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR  263 (433)
T ss_pred             cccceecCc-cccceeeccccccceehhhhhhcc
Confidence            0 1223456 777899999999999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=94.87  E-value=0.82  Score=45.41  Aligned_cols=144  Identities=16%  Similarity=0.269  Sum_probs=98.5

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCe
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW  359 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W  359 (466)
                      -++...|++|       ...|++||.++++  +|=++..|..-...++.-.+|..+| -|+.+|.+-+=|||+++..   
T Consensus        50 pdk~~LAaa~-------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~q---  118 (311)
T KOG0315|consen   50 PDKKDLAAAG-------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQ---  118 (311)
T ss_pred             CCcchhhhcc-------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccc---
Confidence            4666777777       3479999999996  4677777755668888999999999 7899999999999998741   


Q ss_pred             EEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEE
Q 012294          360 ICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITN  438 (466)
Q Consensus       360 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~  438 (466)
                             |....+.+- ....++-+.+.||+. +.|.|-||.=.+    .     .-+..+     |-.    ..-.|++
T Consensus       119 -------R~~~~~spV-n~vvlhpnQteLis~dqsg~irvWDl~~----~-----~c~~~l-----iPe----~~~~i~s  172 (311)
T KOG0315|consen  119 -------RNYQHNSPV-NTVVLHPNQTELISGDQSGNIRVWDLGE----N-----SCTHEL-----IPE----DDTSIQS  172 (311)
T ss_pred             -------hhccCCCCc-ceEEecCCcceEEeecCCCcEEEEEccC----C-----cccccc-----CCC----CCcceee
Confidence                   111111233 667888889999998 889999997651    1     111111     111    1235777


Q ss_pred             Eeeecc-eeEEEeeccceEEEeccC
Q 012294          439 LSFGGN-KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       439 ~~~gg~-r~f~~~~~~~~~~vw~~~  462 (466)
                      +.++=| .|.++=++.---=||+..
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEcc
Confidence            766643 355555666666778754

>PLN02772 guanylate kinase

Probab=94.79  E-value=0.075  Score=56.04  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=53.9

Q ss_pred             CccccceeeeeecccCCcEEEEecccCCCce-eccceeeeeCCCCceeecC-----CC-CCceeEEEEECCeEEE-EecC
Q 012294          165 TILTHFTAVDSLLALSPGVAAAGATDFSGLQ-VLDLENGYVKETLNWENVT-----RS-SSTVQAIGSSDKHLFV-SFES  236 (466)
Q Consensus       165 ~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~-~l~svE~ydp~t~~W~~va-----~M-r~~~~Ava~l~~~IYa-Gg~~  236 (466)
                      .++..+.+++    +++++|++||  .+... ..+.+-+||+.+++|+..+     |. |.++.|+..-++.|++ +...
T Consensus        23 ~~~~~~tav~----igdk~yv~GG--~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         23 KPKNRETSVT----IGDKTYVIGG--NHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCCcceeEE----ECCEEEEEcc--cCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            3566666776    9999999999  44433 5678999999999998665     33 8888854444678999 4332


Q ss_pred             CCcCCCeeEEEecCC
Q 012294          237 GRRNSNSIMVYDINS  251 (466)
Q Consensus       237 g~~~l~sVE~YDp~t  251 (466)
                      +.  ..++.---..|
T Consensus        97 ~~--~~~~w~l~~~t  109 (398)
T PLN02772         97 AP--DDSIWFLEVDT  109 (398)
T ss_pred             CC--ccceEEEEcCC
Confidence            32  24555544555

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.78  E-value=3  Score=42.00  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=87.2

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-CeeeeEEcC---CcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAWEVKD---EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~~~---~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      +...+-...|||++.-      .+.|..|+... ++  ++...   ....-+.+++++++..||..+-.+|.|.+.|+..
T Consensus        40 l~~spd~~~lyv~~~~------~~~i~~~~~~~~g~--l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         40 MVISPDKRHLYVGVRP------EFRVLSYRIADDGA--LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             EEECCCCCEEEEEECC------CCcEEEEEECCCCc--eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            3444456678886651      34688888863 44  33222   2223467888999999998877889999999865


Q ss_pred             cCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccc--eeeccccCcc
Q 012294          353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEER--VFRKNLMGRV  428 (466)
Q Consensus       353 ~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~  428 (466)
                      -+...  ..+..    ... ...-..+.+.--++++|++  ..+.|.||.--    ..    +.+...  ...+--.|..
T Consensus       112 ~g~~~--~~~~~----~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~----~~----g~l~~~~~~~~~~~~g~~  176 (330)
T PRK11028        112 DGIPV--APIQI----IEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS----DD----GHLVAQEPAEVTTVEGAG  176 (330)
T ss_pred             CCCCC--Cceee----ccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC----CC----CcccccCCCceecCCCCC
Confidence            33210  11111    111 0110333344445688876  45889999742    11    122111  1011111221


Q ss_pred             ccCCCCceEEEeeecceeEEEeeccceEEEeccC
Q 012294          429 TDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       429 ~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      +   ++  ..|.-.|.+|||+-+..+.|-||+..
T Consensus       177 p---~~--~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        177 P---RH--MVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             C---ce--EEECCCCCEEEEEecCCCEEEEEEEe
Confidence            1   11  23445677999998878888888754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.71  E-value=0.7  Score=50.88  Aligned_cols=171  Identities=18%  Similarity=0.307  Sum_probs=112.4

Q ss_pred             CCeeEEEecCCCCcccccc-ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEIG-QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~-~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      .++|-+||.++-+.+..++ +             ...+.-+..++-+.++|.+||      +|.+||+++++++-+..+|
T Consensus       310 D~tVkVW~v~n~~~l~l~~~h-------------~~~V~~v~~~~~~lvsgs~d~------~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  310 DNTVKVWDVTNGACLNLLRGH-------------TGPVNCVQLDEPLLVSGSYDG------TVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             CceEEEEeccCcceEEEeccc-------------cccEEEEEecCCEEEEEecCc------eEEEEEhhhceeeeeecCC
Confidence            6789999998743333333 2             112233345677778887554      7999999999999999999


Q ss_pred             cccccceeeecCCCceEEEEEeeCceeEeecccc-CCCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eCCeEE
Q 012294          320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL-GDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIE  397 (466)
Q Consensus       320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~-~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~  397 (466)
                      ...+-.+.++.. ..+| =|+.++.+-+-||+.. ..      +--    ..+  ..+.-..+.++++.|-.+ -++.|.
T Consensus       371 ~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~~c------~~t----l~~--h~~~v~~l~~~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  371 TGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKRKC------IHT----LQG--HTSLVSSLLLRDNFLVSSSADGTIK  436 (537)
T ss_pred             cceEEEEEecCc-ceEE-eeeeccceEeecCCchhhh------hhh----hcC--CcccccccccccceeEeccccccEE
Confidence            755566555554 5544 5778888888888876 32      111    222  222336678888888777 555699


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      +|..-    +.     ..-+.+      ..   .+.+.|+.+.+| +-.++...++..+++|.-+.
T Consensus       437 ~WD~~----~~-----~~~~~~------~~---~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  437 LWDAE----EG-----ECLRTL------EG---RHVGGVSALALG-KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             Eeecc----cC-----ceeeee------cc---CCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence            99442    11     111111      11   145679988888 89999999999999997543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=94.64  E-value=0.018  Score=64.54  Aligned_cols=85  Identities=31%  Similarity=0.318  Sum_probs=63.3

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------------C-----c--e-eEcCCchhHHHHhcccccCccc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------------T-----H--R-FIDRDPELFSILLSLLRTGNLP   81 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------------~-----~--~-fiDRDp~~F~~IL~ylrtG~l~   81 (466)
                      =.+|++.||+..|++||-.|+.  .+++|+.+|-.            +     +  + |-|..|.+|++||+|+||..+.
T Consensus       558 ~hDVtf~vg~~~F~aHKfIl~~--rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~  635 (1267)
T KOG0783|consen  558 FHDVTFYVGTSMFHAHKFILCA--RSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL  635 (1267)
T ss_pred             cceEEEEecCeecccceEEEEe--ccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence            3589999999999999999997  46699998752            0     1  3 4468999999999999998654


Q ss_pred             cC--CCC----------cCh-------HHHHHhhccccchhhHHhh
Q 012294           82 SK--AKA----------FDI-------EDLIEESKFYNIESLLINS  108 (466)
Q Consensus        82 ~~--~~~----------~~~-------~~Ll~EA~f~~l~~l~~~~  108 (466)
                      .+  .++          .|.       ++|+.-++-|++.+|....
T Consensus       636 ~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~  681 (1267)
T KOG0783|consen  636 SPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS  681 (1267)
T ss_pred             CCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence            32  111          122       2488888888888887665

>PF13854 Kelch_5: Kelch motif

Probab=94.48  E-value=0.064  Score=38.17  Aligned_cols=38  Identities=13%  Similarity=-0.004  Sum_probs=28.9

Q ss_pred             CCccccceeeeeecccCCcEEEEecccCCC--ceeccceeeeeCCC
Q 012294          164 STILTHFTAVDSLLALSPGVAAAGATDFSG--LQVLDLENGYVKET  207 (466)
Q Consensus       164 ~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g--~~~l~svE~ydp~t  207 (466)
                      +.+|..|++++    ++++||+.||  .++  ...++.+-.+|..+
T Consensus         2 P~~R~~hs~~~----~~~~iyi~GG--~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    2 PSPRYGHSAVV----VGNNIYIFGG--YSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCccceEEEE----ECCEEEEEcC--ccCCCCCEECcEEEEECCC
Confidence            56799998887    8999999999  653  44566666666654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.71  Score=50.00  Aligned_cols=153  Identities=21%  Similarity=0.273  Sum_probs=80.9

Q ss_pred             CCCCCceeeecCCcEEEEcC---CceeeEe-cCCCCCCCccc-cceeeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294          131 RDSPSAIATTNYGTLHVSHG---SKITSFD-WSMRKKSTILT-HFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK  205 (466)
Q Consensus       131 R~~~~a~~a~~~g~lyva~G---G~ve~YD-W~~a~m~~~R~-~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp  205 (466)
                      +...+++.-..+|... |+|   |.++.|| +..-...+.+. +.+.|.+++ -++.+...|.  -++....     +|.
T Consensus       217 ~~~vtSv~ws~~G~~L-avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la-W~~~~lssGs--r~~~I~~-----~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHL-AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA-WNSSVLSSGS--RDGKILN-----HDV  287 (484)
T ss_pred             CCceEEEEECCCCCEE-EEeecCCeEEEEehhhccccccccCCcCceeEEEe-ccCceEEEec--CCCcEEE-----EEE
Confidence            3444433444566666 556   6778888 55522222222 222232222 5678888888  5554321     121


Q ss_pred             CCCceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc-eeeE
Q 012294          206 ETLNWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-KLRW  279 (466)
Q Consensus       206 ~t~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-k~~~  279 (466)
                      ...+-. +..|   +..+++.... ++...| ||.     .|.+-+||.....|...+....          ++- .+.|
T Consensus       288 R~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~~~~~p~~~~~~H~----------aAVKA~aw  351 (484)
T KOG0305|consen  288 RISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDGLSPEPKFTFTEHT----------AAVKALAW  351 (484)
T ss_pred             ecchhh-hhhhhcccceeeeeEECCCCCeeccCCC-----ccceEeccCCCccccEEEeccc----------eeeeEeee
Confidence            111110 0013   3334434444 445666 544     6788999996655444444333          222 3567


Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCee
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV  312 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~  312 (466)
                      .+...=|.|+||  |+.  ...|..||..++..
T Consensus       352 cP~q~~lLAsGG--Gs~--D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  352 CPWQSGLLATGG--GSA--DRCIKFWNTNTGAR  380 (484)
T ss_pred             CCCccCceEEcC--CCc--ccEEEEEEcCCCcE
Confidence            787888888888  654  55688888776653

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=94.47  E-value=0.11  Score=38.00  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             CCeEEEEeecC-CCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          283 YNLLLASGSHS-DISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       283 ~~~Lyv~Gg~~-g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      ++.||+.||.+ .....++.+-+||+.+++  |+..+.
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~   36 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD   36 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC
Confidence            57899999998 334567899999999998  998633

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.36  E-value=0.82  Score=45.74  Aligned_cols=107  Identities=17%  Similarity=0.251  Sum_probs=76.0

Q ss_pred             EEEECC---eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee--EEeeCCeEEEEeecCCCCc
Q 012294          223 IGSSDK---HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR--WVSSYNLLLASGSHSDISK  297 (466)
Q Consensus       223 va~l~~---~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~--~~~~~~~Lyv~Gg~~g~~~  297 (466)
                      ++++++   .+|.|.+     ..-+-+.||.+       |.      -.|.++--.+.-  -.+.+++ .|+|=+     
T Consensus        16 LVV~~dskT~v~igSH-----s~~~~avd~~s-------G~------~~We~ilg~RiE~sa~vvgdf-VV~GCy-----   71 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSH-----SGIVIAVDPQS-------GN------LIWEAILGVRIECSAIVVGDF-VVLGCY-----   71 (354)
T ss_pred             EEEecCCceEEEEecC-----CceEEEecCCC-------Cc------EEeehhhCceeeeeeEEECCE-EEEEEc-----
Confidence            456663   3555544     34578889999       33      558776543332  2336666 566664     


Q ss_pred             ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                       ++-+...+..|++..|.+.....--....++.+++.|| .|.+||++|++|-++-+.
T Consensus        72 -~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIy-cgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   72 -SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIY-CGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             -cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEE-EecCCCcEEEecccccce
Confidence             44688889999998999876643346667889999999 788999999999999774

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=94.15  E-value=0.036  Score=52.89  Aligned_cols=85  Identities=20%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CCCeEEEEECC---eEEEEeHHHhhccCCCCccccccCC-C---c--eeEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294           21 DSNIVTIDVGG---QIFQTTKQTLALAGPKSLLSKLADS-T---H--RFIDRDPELFSILLSLLRTGNLPSKAKAFDIED   91 (466)
Q Consensus        21 ~~~~V~LnVGG---~~F~t~~~tL~~~~p~s~f~~mf~~-~---~--~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~   91 (466)
                      .-.++++.++|   +..++|+-+|+++   |=|..+.+. +   +  ..-|.||++|...+.|+||.+|.+..++.-..+
T Consensus        65 qfSDlk~K~~gns~k~i~AHKfVLAAR---sD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~e  141 (280)
T KOG4591|consen   65 QFSDLKFKFAGNSDKHIPAHKFVLAAR---SDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLE  141 (280)
T ss_pred             cccceeEEecCCccccCchhhhhhhhh---cchhhhccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHH
Confidence            34689999995   7899999999984   244455443 2   2  567899999999999999999998644444678


Q ss_pred             HHHhhccccchhhHHhh
Q 012294           92 LIEESKFYNIESLLINS  108 (466)
Q Consensus        92 Ll~EA~f~~l~~l~~~~  108 (466)
                      |.+-|+-|||+.|.+.|
T Consensus       142 l~e~An~FqLe~Lke~C  158 (280)
T KOG4591|consen  142 LCELANRFQLELLKERC  158 (280)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999988

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=93.60  E-value=0.33  Score=52.85  Aligned_cols=66  Identities=27%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--------cccccce---eeecCCCceEEEEEeeCceeEeec
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--------VDCFSDV---TVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--------~d~~~~~---~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      -.+-|+++|+.+|      .||+||||+.+.|=..--.        +|.+..+   ..+.+|.. +.||.-.|.+|+-||
T Consensus       185 ~~hgLla~Gt~~g------~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  185 EEHGLLACGTEDG------VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDL  257 (703)
T ss_pred             CccceEEecccCc------eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEc
Confidence            4556778888544      7999999999887554322        2222222   22223333 457779999999999


Q ss_pred             cccC
Q 012294          351 RKLG  354 (466)
Q Consensus       351 r~~~  354 (466)
                      |.-.
T Consensus       258 Ra~~  261 (703)
T KOG2321|consen  258 RASK  261 (703)
T ss_pred             ccCC
Confidence            9854

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.31  E-value=1.9  Score=47.34  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=93.4

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCC--CceeecCCC----C-------CceeEEEEECCeEEEEecCCCcCCCeeE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKET--LNWENVTRS----S-------STVQAIGSSDKHLFVSFESGRRNSNSIM  245 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t--~~W~~va~M----r-------~~~~Ava~l~~~IYaGg~~g~~~l~sVE  245 (466)
                      .++.||+...  ..      .+-++|..+  ..|+.-...    .       .+.+ +++.+++||++..     ...+-
T Consensus        68 ~~g~vyv~s~--~g------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~-----dg~l~  133 (527)
T TIGR03075        68 VDGVMYVTTS--YS------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTL-----DARLV  133 (527)
T ss_pred             ECCEEEEECC--CC------cEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcC-----CCEEE
Confidence            7888888654  32      244555554  356543221    1       1122 5778899999433     34688


Q ss_pred             EEecCCCCccccccccccccCCceeecCc-------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          246 VYDINSLKPVNEIGQNEIYGTDIESAIPA-------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       246 ~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      ++|.+|       |+      ..|+.-..       +.-.-+..+++||+.... +..+..+.|-.+|.+|++.+|.+..
T Consensus       134 ALDa~T-------Gk------~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       134 ALDAKT-------GK------VVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             EEECCC-------CC------EEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccC
Confidence            999999       54      33554221       111122368888875431 2223467899999999999999653


Q ss_pred             C-cc-------------------------------cccceeeecCCCceEEEEEe----eC-----------ceeEeecc
Q 012294          319 E-VD-------------------------------CFSDVTVSDNLSAIYKVGIN----SG-----------EVSYMDLR  351 (466)
Q Consensus       319 ~-~d-------------------------------~~~~~~v~~~~~~i~~v~~~----~g-----------~l~~~dlr  351 (466)
                      - .+                               .-..+++|++.+.||.--++    ++           .|..+|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            2 11                               11235888889999944433    34           68888998


Q ss_pred             ccCC--------CCCeEE
Q 012294          352 KLGD--------SSEWIC  361 (466)
Q Consensus       352 ~~~~--------~~~W~~  361 (466)
                      +-+-        +|.|=+
T Consensus       280 TG~~~W~~Q~~~~D~wD~  297 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDY  297 (527)
T ss_pred             cCCEEEeeeCCCCCCccc
Confidence            8652        677744

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=93.30  E-value=0.39  Score=49.48  Aligned_cols=124  Identities=19%  Similarity=0.336  Sum_probs=78.4

Q ss_pred             eCCCCceeecCCC-----------CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccc-cccccccCCceee
Q 012294          204 VKETLNWENVTRS-----------SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI-GQNEIYGTDIESA  271 (466)
Q Consensus       204 dp~t~~W~~va~M-----------r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~  271 (466)
                      |...-.|...+|-           |+.+. ++-.+++..|.-. |   ..++-+||..|..-+..+ |||+         
T Consensus       296 DrsiaVWdm~sps~it~rrVLvGHrAaVN-vVdfd~kyIVsAS-g---DRTikvW~~st~efvRtl~gHkR---------  361 (499)
T KOG0281|consen  296 DRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSAS-G---DRTIKVWSTSTCEFVRTLNGHKR---------  361 (499)
T ss_pred             CceeEEEeccCchHHHHHHHHhhhhhhee-eeccccceEEEec-C---CceEEEEeccceeeehhhhcccc---------
Confidence            3344457666653           55555 5666777444211 1   357889999995544444 2333         


Q ss_pred             cCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          272 IPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       272 ~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                          ...++...++|.|+|..      .++|++||..+|.+..-..+|.+-.--  +.=++-.| +-|+++|.+-+=||.
T Consensus       362 ----GIAClQYr~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRc--iRFd~krI-VSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  362 ----GIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI-VSGAYDGKIKVWDLQ  428 (499)
T ss_pred             ----cceehhccCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhh--eeecCcee-eeccccceEEEEecc
Confidence                12345688999998873      448999999999988777777322111  22234443 257799999999998


Q ss_pred             ccC
Q 012294          352 KLG  354 (466)
Q Consensus       352 ~~~  354 (466)
                      ..+
T Consensus       429 aal  431 (499)
T KOG0281|consen  429 AAL  431 (499)
T ss_pred             ccc
Confidence            766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.21  E-value=0.6  Score=52.19  Aligned_cols=105  Identities=14%  Similarity=0.247  Sum_probs=73.4

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDS  356 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~  356 (466)
                      ...++  |.=|+++|  +   ...+|++||..++.+|.-+.+|..++..+++++.|..| +-|+.+|.|-+=||..... 
T Consensus       541 v~FHP--Ns~Y~aTG--S---sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~-  611 (707)
T KOG0263|consen  541 VSFHP--NSNYVATG--S---SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL-  611 (707)
T ss_pred             EEECC--cccccccC--C---CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc-
Confidence            34444  44567776  1   35699999999999999999999899999999988773 2556888888888887442 


Q ss_pred             CCeEEeccCCcccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEe
Q 012294          357 SEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSE  401 (466)
Q Consensus       357 ~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~  401 (466)
                           +..    |.+ . .+ -++-==+.+|-|+|+  .+-+|-||.-
T Consensus       612 -----v~~----l~~-H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  612 -----VKQ----LKG-H-TGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             -----hhh----hhc-c-cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence                 332    333 1 22 222223667888887  4557999954

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.14  E-value=1.4  Score=43.51  Aligned_cols=215  Identities=17%  Similarity=0.298  Sum_probs=121.4

Q ss_pred             CCcEEEEcCCceeeEecCC---CCCCCccccceeeeeecccCCc-EEEEecccCCCceeccceeeeeCCCCceeecCCC-
Q 012294          142 YGTLHVSHGSKITSFDWSM---RKKSTILTHFTAVDSLLALSPG-VAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-  216 (466)
Q Consensus       142 ~g~lyva~GG~ve~YDW~~---a~m~~~R~~~~~v~sl~~l~~~-lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-  216 (466)
                      |+.-+++.||--.+|-|..   .-....|.+.+-++.+.+-... +.+-|+  ++     +++..+|-.++.-.++--+ 
T Consensus        70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs--fD-----~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS--FD-----SSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc--cc-----ceeEEEEcccCCCCccchhh
Confidence            5555546666433334544   2234446666666655554444 555555  55     4677888888876666544 


Q ss_pred             --CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcccccccccc--ccCCceeecCcceeeEEeeCCeEEEEeec
Q 012294          217 --SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEI--YGTDIESAIPATKLRWVSSYNLLLASGSH  292 (466)
Q Consensus       217 --r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~--~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~  292 (466)
                        +-++..+.+.+-.|.+|.-     ..++-.||...       |+-..  |+.      +...+....-.|++.|... 
T Consensus       143 ea~D~V~Si~v~~heIvaGS~-----DGtvRtydiR~-------G~l~sDy~g~------pit~vs~s~d~nc~La~~l-  203 (307)
T KOG0316|consen  143 EAKDGVSSIDVAEHEIVAGSV-----DGTVRTYDIRK-------GTLSSDYFGH------PITSVSFSKDGNCSLASSL-  203 (307)
T ss_pred             hhcCceeEEEecccEEEeecc-----CCcEEEEEeec-------ceeehhhcCC------cceeEEecCCCCEEEEeec-
Confidence              6677744444444655543     34678999988       33221  111      1122333345666666543 


Q ss_pred             CCCCcccceEEEEeCCCCeeeeEEcCCc--ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc
Q 012294          293 SDISKVTGNIKFWDIRSGNVAWEVKDEV--DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN  370 (466)
Q Consensus       293 ~g~~~~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~  370 (466)
                            .+++++.|-.|++..-+.++|.  .=..|..+....-.+| -|+.+|.+||=||-.-.-      ++.    +.
T Consensus       204 ------~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~-sgSEDG~Vy~wdLvd~~~------~sk----~~  266 (307)
T KOG0316|consen  204 ------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF-SGSEDGKVYFWDLVDETQ------ISK----LS  266 (307)
T ss_pred             ------cceeeecccchhHHHHHhcccccceeeeeeeecccceeEE-eccCCceEEEEEecccee------eee----ec
Confidence                  5689999999999999998882  1223333444444433 466999999999865221      221    11


Q ss_pred             cccccc-ceeEEEEEC--CEEEEEeCCeEEEeEe
Q 012294          371 GKRKEG-FGCKIECHA--NQVFCGKGGEIELWSE  401 (466)
Q Consensus       371 ~~~~~~-~~~~~~~~~--~~lf~~~~~~~~v~~~  401 (466)
                      .  +.. .-..|.||-  -.++.+.+..+-.|-+
T Consensus       267 ~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  267 V--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             c--CCceeEEeeecccCccceeEecCCceeceee
Confidence            0  010 122344443  4667777777766654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.14  E-value=0.62  Score=48.59  Aligned_cols=130  Identities=17%  Similarity=0.420  Sum_probs=81.4

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~  319 (466)
                      ..+|-.||+.|-+|..+|-.     +..|-.    .+.|.+ ++...|+|-      ..++|.+|||.+++.+ -.+.+|
T Consensus       136 D~TvR~WD~~TeTp~~t~Kg-----H~~WVl----cvawsP-Dgk~iASG~------~dg~I~lwdpktg~~~g~~l~gH  199 (480)
T KOG0271|consen  136 DTTVRLWDLDTETPLFTCKG-----HKNWVL----CVAWSP-DGKKIASGS------KDGSIRLWDPKTGQQIGRALRGH  199 (480)
T ss_pred             CceEEeeccCCCCcceeecC-----CccEEE----EEEECC-Ccchhhccc------cCCeEEEecCCCCCcccccccCc
Confidence            46899999999776666643     345653    355654 778888887      3558999999999866 444444


Q ss_pred             -----cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE--EC--CEEEE
Q 012294          320 -----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC--HA--NQVFC  390 (466)
Q Consensus       320 -----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~--~~lf~  390 (466)
                           .=++-++..++..+ .++-++++|++.+=|+.. +     .|+--    |.     |+.-.+.|  .|  |.+|.
T Consensus       200 ~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~-~-----~~~~~----ls-----gHT~~VTCvrwGG~gliyS  263 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL-G-----TCVRT----LS-----GHTASVTCVRWGGEGLIYS  263 (480)
T ss_pred             ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC-c-----eEEEE----ec-----cCccceEEEEEcCCceEEe
Confidence                 22233344455555 566677999987777654 2     22221    22     12233333  33  56776


Q ss_pred             E-eCCeEEEeEee
Q 012294          391 G-KGGEIELWSEI  402 (466)
Q Consensus       391 ~-~~~~~~v~~~~  402 (466)
                      + ++..|.||-.-
T Consensus       264 gS~DrtIkvw~a~  276 (480)
T KOG0271|consen  264 GSQDRTIKVWRAL  276 (480)
T ss_pred             cCCCceEEEEEcc
Confidence            5 88899999764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=93.12  E-value=3.3  Score=41.71  Aligned_cols=183  Identities=18%  Similarity=0.275  Sum_probs=107.3

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      .+++-.||... ...-+|....   +..|-    ..+.|.|.. +-+.+.+|.|.      +|.+||.++=+.-=...+|
T Consensus       126 DkTiklwnt~g-~ck~t~~~~~---~~~WV----scvrfsP~~~~p~Ivs~s~Dk------tvKvWnl~~~~l~~~~~gh  191 (315)
T KOG0279|consen  126 DKTIKLWNTLG-VCKYTIHEDS---HREWV----SCVRFSPNESNPIIVSASWDK------TVKVWNLRNCQLRTTFIGH  191 (315)
T ss_pred             cceeeeeeecc-cEEEEEecCC---CcCcE----EEEEEcCCCCCcEEEEccCCc------eEEEEccCCcchhhccccc
Confidence            78888898877 1111222100   02233    245666654 78888888655      7999999998866677777


Q ss_pred             cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCCeEEEe
Q 012294          320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELW  399 (466)
Q Consensus       320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~  399 (466)
                      .--..-++|++||+.+- =|+++|+.+.-||+.-+.    .|--+.+-..       ..+..--.+=+|-+..+-+|-+|
T Consensus       192 ~~~v~t~~vSpDGslca-sGgkdg~~~LwdL~~~k~----lysl~a~~~v-------~sl~fspnrywL~~at~~sIkIw  259 (315)
T KOG0279|consen  192 SGYVNTVTVSPDGSLCA-SGGKDGEAMLWDLNEGKN----LYSLEAFDIV-------NSLCFSPNRYWLCAATATSIKIW  259 (315)
T ss_pred             cccEEEEEECCCCCEEe-cCCCCceEEEEEccCCce----eEeccCCCeE-------eeEEecCCceeEeeccCCceEEE
Confidence            55668889999998733 366999999999998553    2111100000       11111111235666788889999


Q ss_pred             EeeeecCCCCCCCCCcccceeeccccCccccCC-CCceE-EEee--ecceeEEEeeccceEEEeccC
Q 012294          400 SEIVMGSRKSREGGPLEERVFRKNLMGRVTDMG-GSKIT-NLSF--GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~i~-~~~~--gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      ..-    ..     ..=+.+ +-.+.|.  .+. ++.|| ++++  -|.-||.-=.| |+|+|||-.
T Consensus       260 dl~----~~-----~~v~~l-~~d~~g~--s~~~~~~~clslaws~dG~tLf~g~td-~~irv~qv~  313 (315)
T KOG0279|consen  260 DLE----SK-----AVVEEL-KLDGIGP--SSKAGDPICLSLAWSADGQTLFAGYTD-NVIRVWQVA  313 (315)
T ss_pred             ecc----ch-----hhhhhc-ccccccc--ccccCCcEEEEEEEcCCCcEEEeeecC-CcEEEEEee
Confidence            873    11     001111 2222332  222 22332 3444  49999987655 799999943

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=93.10  E-value=0.58  Score=49.02  Aligned_cols=98  Identities=22%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      .++|-+.|..|.+++..|....    +...     .+...+-+..+|+++.       .+.|-++|+.+++++.+..-..
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~----~~h~-----~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGG----APHA-----GLKFSPDGRYLYVANR-------DGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-ST----TEEE-----EEE-TT-SSEEEEEET-------TSEEEEEETTSSSEEEEEE-SS
T ss_pred             CCEEEEEECCCCeEEEEEcCCC----Ccee-----EEEecCCCCEEEEEcC-------CCeEEEEECCcccEEEEEecCC
Confidence            5789999999977777665411    1100     0011122457999853       3479999999999999986655


Q ss_pred             ccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      .++ +++++.||..||+.|-..+.+-+.|.++++-
T Consensus        79 ~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~  112 (369)
T PF02239_consen   79 NPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEP  112 (369)
T ss_dssp             EEE-EEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred             Ccc-eEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence            444 4889999999999999999999999999883

...

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=92.90  E-value=0.81  Score=48.18  Aligned_cols=141  Identities=18%  Similarity=0.269  Sum_probs=94.9

Q ss_pred             ECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEE
Q 012294          226 SDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIK  303 (466)
Q Consensus       226 l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe  303 (466)
                      .+|.+-+ ||.+     +.--+||..|       |++.-| .|..   .+...+.|- -+|...|.|+.      .+++.
T Consensus       313 ~DGSL~~tGGlD-----~~~RvWDlRt-------gr~im~L~gH~---k~I~~V~fs-PNGy~lATgs~------Dnt~k  370 (459)
T KOG0272|consen  313 PDGSLAATGGLD-----SLGRVWDLRT-------GRCIMFLAGHI---KEILSVAFS-PNGYHLATGSS------DNTCK  370 (459)
T ss_pred             CCCceeeccCcc-----chhheeeccc-------CcEEEEecccc---cceeeEeEC-CCceEEeecCC------CCcEE
Confidence            3567777 6653     2335899999       776654 2211   112233444 48899999983      45899


Q ss_pred             EEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEE
Q 012294          304 FWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIE  382 (466)
Q Consensus       304 ~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~  382 (466)
                      +||.|.-+.+-+.-+|.+-.+++-.++..+...+-|+++.+   +-|=+   +..|.+++.    |.+  -++ --+.--
T Consensus       371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t---~kiWs---~~~~~~~ks----LaG--He~kV~s~Di  438 (459)
T KOG0272|consen  371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT---VKIWS---TRTWSPLKS----LAG--HEGKVISLDI  438 (459)
T ss_pred             EeeecccccceecccccchhhheEecccCCeEEEEcccCcc---eeeec---CCCcccchh----hcC--CccceEEEEe
Confidence            99999999999999998888999999866766667788888   43333   577888888    775  222 222223


Q ss_pred             EECCEEEEE--eCCeEEEeE
Q 012294          383 CHANQVFCG--KGGEIELWS  400 (466)
Q Consensus       383 ~~~~~lf~~--~~~~~~v~~  400 (466)
                      .+++|.+++  .+-++.+|.
T Consensus       439 s~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  439 SPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCCceEEEeccCceeeecc
Confidence            456777766  556666664

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=92.87  E-value=0.069  Score=56.87  Aligned_cols=86  Identities=20%  Similarity=0.168  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEEC-----CeEEEEeHHHhhccCCCCccccccCC----C---c-eeEcCCchhHHHHhcccccCccccCCC
Q 012294           19 SIDSNIVTIDVG-----GQIFQTTKQTLALAGPKSLLSKLADS----T---H-RFIDRDPELFSILLSLLRTGNLPSKAK   85 (466)
Q Consensus        19 ~~~~~~V~LnVG-----G~~F~t~~~tL~~~~p~s~f~~mf~~----~---~-~fiDRDp~~F~~IL~ylrtG~l~~~~~   85 (466)
                      .+...++++-||     -+.|+.||-.|+.  .+.-|.+||.+    +   + -.-|.+|.+|...|.|+|...+.+.  
T Consensus       111 n~~~adv~fivg~~~~~~q~~paHk~vla~--gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~--  186 (521)
T KOG2075|consen  111 NELLADVHFIVGEEDGGSQRIPAHKLVLAD--GSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA--  186 (521)
T ss_pred             CcccceeEEEeccCCCcccccchhhhhhhc--chHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh--
Confidence            444678999998     3899999999997  56799999986    2   2 3779999999999999999887764  


Q ss_pred             CcChHHHHHhhccccchhhHHhh
Q 012294           86 AFDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        86 ~~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                      ..++..++..|+=|-+..|.++|
T Consensus       187 ~dtvi~tl~~AkKY~VpaLer~C  209 (521)
T KOG2075|consen  187 ADTVITTLYAAKKYLVPALERQC  209 (521)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH
Confidence            46788999999999999999998

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.55  E-value=6.7  Score=43.10  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             eCCeEEEEeecCCC---------CcccceEEEEeCCCCeeeeEEcCC------ccccc-ceeee--cCCC--ceEEEEEe
Q 012294          282 SYNLLLASGSHSDI---------SKVTGNIKFWDIRSGNVAWEVKDE------VDCFS-DVTVS--DNLS--AIYKVGIN  341 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~---------~~~~~sVe~yDprt~~~vW~~~~~------~d~~~-~~~v~--~~~~--~i~~v~~~  341 (466)
                      -.|+||+-.|.-.|         +-+.++|=..|++|++.+|.+-..      -|.-+ .+-++  .++.  .+..+..+
T Consensus       244 ~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K  323 (527)
T TIGR03075       244 ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR  323 (527)
T ss_pred             CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC
Confidence            57899998876222         224668999999999999998643      12212 22222  3554  35556669


Q ss_pred             eCceeEeeccccC
Q 012294          342 SGEVSYMDLRKLG  354 (466)
Q Consensus       342 ~g~l~~~dlr~~~  354 (466)
                      +|.+|++|=+.-+
T Consensus       324 ~G~~~vlDr~tG~  336 (527)
T TIGR03075       324 NGFFYVLDRTNGK  336 (527)
T ss_pred             CceEEEEECCCCc
Confidence            9999999977633

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13854 Kelch_5: Kelch motif

Probab=92.48  E-value=0.25  Score=35.05  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             CCceeEEEEECCeEEE-EecCC--CcCCCeeEEEecCC
Q 012294          217 SSTVQAIGSSDKHLFV-SFESG--RRNSNSIMVYDINS  251 (466)
Q Consensus       217 r~~~~Ava~l~~~IYa-Gg~~g--~~~l~sVE~YDp~t  251 (466)
                      |..++ +++.+++||+ ||.++  ....+.+.+||..+
T Consensus         5 R~~hs-~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    5 RYGHS-AVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             ccceE-EEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            67776 6788999999 88863  44488999999876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.45  E-value=14  Score=37.84  Aligned_cols=249  Identities=14%  Similarity=0.131  Sum_probs=129.9

Q ss_pred             CCcEEEEecccCCCceeccceeee--eCCCCceeecCCC----CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGY--VKETLNWENVTRS----SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINS  251 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~y--dp~t~~W~~va~M----r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t  251 (466)
                      +..||++..  ..  ..-..+..|  ++.+.+.+.+...    ..-+. +++.  +..||+..+.    ..+|.+|+...
T Consensus        48 ~~~LY~~~e--~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~-i~~~~~g~~l~vany~----~g~v~v~~l~~  118 (345)
T PF10282_consen   48 GRRLYVVNE--GS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH-IAVDPDGRFLYVANYG----GGSVSVFPLDD  118 (345)
T ss_dssp             SSEEEEEET--TS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEE-EEECTTSSEEEEEETT----TTEEEEEEECT
T ss_pred             CCEEEEEEc--cc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEE-EEEecCCCEEEEEEcc----CCeEEEEEccC
Confidence            356888865  21  011234444  3433455444332    22233 5553  3468884432    56788888877


Q ss_pred             CCccccccccccccC---CceeecCc--ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--ee---eEEcCCcc
Q 012294          252 LKPVNEIGQNEIYGT---DIESAIPA--TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VA---WEVKDEVD  321 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~---~~w~~~~~--~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~v---W~~~~~~d  321 (466)
                      .-.+.+......+.+   +.-....+  -.+.+.+-++.|||+--  |    .+.|..|+...+.  ..   .-..+++.
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G----~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--G----ADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--T----TTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--C----CCEEEEEEEeCCCceEEEeeccccccCC
Confidence            211111110000000   00000011  12233455678888765  3    3368888877665  21   12223344


Q ss_pred             cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEE--CCEEEEEe--CCeE
Q 012294          322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECH--ANQVFCGK--GGEI  396 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~--~~~lf~~~--~~~~  396 (466)
                      -=-.+.+.+++..+|+++-.+++|.+.++..-.  +.+..+..-. .+....... ....|+..  +..||++-  .+.|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTIS-TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEE-SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccC--CceeEEEEee-eccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            444688999999999999999999999988322  2333222200 010001111 45566666  78899993  4468


Q ss_pred             EEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEecc
Q 012294          397 ELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       397 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~  461 (466)
                      .+|.-=   .+.    +.|+    +   ++..+ .+|..-.+|++  -|++|+|+-.+.+.|.|++-
T Consensus       270 ~vf~~d---~~~----g~l~----~---~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  270 SVFDLD---PAT----GTLT----L---VQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEC---TTT----TTEE----E---EEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEe---cCC----CceE----E---EEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            777651   011    1121    1   11111 23444888888  99999999999999999863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.43  E-value=4  Score=45.06  Aligned_cols=159  Identities=18%  Similarity=0.205  Sum_probs=94.0

Q ss_pred             CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEE--EEC--CeEEEEecC
Q 012294          161 RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIG--SSD--KHLFVSFES  236 (466)
Q Consensus       161 a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava--~l~--~~IYaGg~~  236 (466)
                      +-..+.|.+.+.|.++ .+++.+.+.|.  ++|     ++-.||+.+.+  -+..++...++|.  +++  +.+|-|.. 
T Consensus       322 ~~l~l~~~h~~~V~~v-~~~~~~lvsgs--~d~-----~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~~~~~~Sgs~-  390 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCV-QLDEPLLVSGS--YDG-----TVKVWDPRTGK--CLKSLSGHTGRVYSLIVDSENRLLSGSL-  390 (537)
T ss_pred             ceEEEeccccccEEEE-EecCCEEEEEe--cCc-----eEEEEEhhhce--eeeeecCCcceEEEEEecCcceEEeeee-
Confidence            5556666544555444 35566666666  665     46777777554  3444422222222  223  33443443 


Q ss_pred             CCcCCCeeEEEecCCC-CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          237 GRRNSNSIMVYDINSL-KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       237 g~~~l~sVE~YDp~t~-~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                          ..+|.+||+++. +.+.....-.            .-..-+.+.+.+++++..|+      +|++||..+++++-.
T Consensus       391 ----D~~IkvWdl~~~~~c~~tl~~h~------------~~v~~l~~~~~~Lvs~~aD~------~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  391 ----DTTIKVWDLRTKRKCIHTLQGHT------------SLVSSLLLRDNFLVSSSADG------TIKLWDAEEGECLRT  448 (537)
T ss_pred             ----ccceEeecCCchhhhhhhhcCCc------------ccccccccccceeEeccccc------cEEEeecccCceeee
Confidence                378999999995 3333333311            11123346777888888555      899999999999999


Q ss_pred             EcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          316 VKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       316 ~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      ..++ .   ..+..-..+...+...+.+|.+..-|||+...
T Consensus       449 ~~~~~~---~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  449 LEGRHV---GGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             eccCCc---ccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            9773 3   22222222234444566999999999999664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=92.18  E-value=5.8  Score=43.98  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=99.2

Q ss_pred             CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-Eec
Q 012294          163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFE  235 (466)
Q Consensus       163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~  235 (466)
                      ....-.+..++-++..+.+..-.|-.  ..+    ++...+|..+..-....-.      +.+.+ ..-.|-.+|+ ||.
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsa--sGD----sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c-f~~~n~~vF~tGgR  165 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSA--SGD----STIRPWDVKTSRLVGGRLNLGHTGSVKSEC-FMPTNPAVFCTGGR  165 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEc--cCC----ceeeeeeeccceeecceeecccccccchhh-hccCCCcceeeccC
Confidence            34445667778888888877655544  222    2455666666665544211      11221 2344556999 887


Q ss_pred             CCCcCCCeeEEEecCCC--------------------CccccccccccccCCceeecCccee----eEEeeCCeEEEEee
Q 012294          236 SGRRNSNSIMVYDINSL--------------------KPVNEIGQNEIYGTDIESAIPATKL----RWVSSYNLLLASGS  291 (466)
Q Consensus       236 ~g~~~l~sVE~YDp~t~--------------------~~~~~~~~~~~~~~~~w~~~~~~k~----~~~~~~~~Lyv~Gg  291 (466)
                      ++.     +..||..-.                    +|..+.-++.    .+|.+-..+-.    ..+..++-..|..|
T Consensus       166 Dg~-----illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~----~k~kA~s~ti~ssvTvv~fkDe~tlaSag  236 (720)
T KOG0321|consen  166 DGE-----ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI----RKWKAASNTIFSSVTVVLFKDESTLASAG  236 (720)
T ss_pred             CCc-----EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc----cccccccCceeeeeEEEEEeccceeeecc
Confidence            553     445554431                    2333333333    34443322211    12335555556555


Q ss_pred             cCCCCcccceEEEEeCCCCeeeeEEcCC-cc----------cccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          292 HSDISKVTGNIKFWDIRSGNVAWEVKDE-VD----------CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       292 ~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d----------~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      -     ..+.|.+||.|++.+.-+--.. .|          .+.-+.+|..|..||+=|. |+.+|+-+|+++..
T Consensus       237 a-----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~  305 (720)
T KOG0321|consen  237 A-----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI  305 (720)
T ss_pred             C-----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc
Confidence            2     2558999999999866544322 11          1234567788999999998 99999999999883

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.17  E-value=2.7  Score=42.74  Aligned_cols=100  Identities=22%  Similarity=0.272  Sum_probs=58.3

Q ss_pred             eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC
Q 012294          229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR  308 (466)
Q Consensus       229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr  308 (466)
                      .+|+|+-     ...|-+||..| +..-.+|.      +.   .+...+......|+ +++||+|.      +|++||||
T Consensus        67 ~~~~G~~-----dg~vr~~Dln~-~~~~~igt------h~---~~i~ci~~~~~~~~-vIsgsWD~------~ik~wD~R  124 (323)
T KOG1036|consen   67 TIVTGGL-----DGQVRRYDLNT-GNEDQIGT------HD---EGIRCIEYSYEVGC-VISGSWDK------TIKFWDPR  124 (323)
T ss_pred             eEEEecc-----CceEEEEEecC-Ccceeecc------CC---CceEEEEeeccCCe-EEEcccCc------cEEEEecc
Confidence            5877654     45789999999 11111111      10   01111122223444 46677655      79999999


Q ss_pred             CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          309 SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       309 t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ...++=...-+.   .=.+++..++. -.||..+-.+.+-|||.++
T Consensus       125 ~~~~~~~~d~~k---kVy~~~v~g~~-LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  125 NKVVVGTFDQGK---KVYCMDVSGNR-LVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ccccccccccCc---eEEEEeccCCE-EEEeecCceEEEEEccccc
Confidence            866554443333   11234444444 3488888999999999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.12  E-value=1.8  Score=43.02  Aligned_cols=142  Identities=20%  Similarity=0.273  Sum_probs=89.2

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKP  254 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~  254 (466)
                      +.+..|++|  ..      -+--||..++.=.+++.-   +.++.+|++- +| .+|.|+++     .+|-+||...+  
T Consensus        51 dk~~LAaa~--~q------hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdlR~~--  115 (311)
T KOG0315|consen   51 DKKDLAAAG--NQ------HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDLRSL--  115 (311)
T ss_pred             Ccchhhhcc--CC------eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEeccCc--
Confidence            456667777  32      356788877762222222   5566655553 33 47877764     46789998873  


Q ss_pred             cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCC
Q 012294          255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLS  333 (466)
Q Consensus       255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~  333 (466)
                          .-|+.|..+.    +...+..++...-|++.-       -++.|+.||.+++.+--+..+. ......++|..||+
T Consensus       116 ----~~qR~~~~~s----pVn~vvlhpnQteLis~d-------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs  180 (311)
T KOG0315|consen  116 ----SCQRNYQHNS----PVNTVVLHPNQTELISGD-------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS  180 (311)
T ss_pred             ----ccchhccCCC----CcceEEecCCcceEEeec-------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence                4455443231    223344445666665533       2568999999999877776654 55667889999999


Q ss_pred             ceEEEEEeeCceeEeeccc
Q 012294          334 AIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~  352 (466)
                      ++- ..-.-|++|+=+|-.
T Consensus       181 ml~-a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  181 MLA-AANNKGNCYVWRLLN  198 (311)
T ss_pred             EEE-EecCCccEEEEEccC
Confidence            943 222678999987655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.02  E-value=1.8  Score=46.00  Aligned_cols=195  Identities=16%  Similarity=0.235  Sum_probs=122.7

Q ss_pred             EEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294          224 GSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI  302 (466)
Q Consensus       224 a~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV  302 (466)
                      +..+|+.+| ||.     .+-|.+||+.|++++.....-+         .+.+.+..---.+.||+++-       ..+|
T Consensus       210 vS~Dgkylatgg~-----d~~v~Iw~~~t~ehv~~~~ghr---------~~V~~L~fr~gt~~lys~s~-------Drsv  268 (479)
T KOG0299|consen  210 VSSDGKYLATGGR-----DRHVQIWDCDTLEHVKVFKGHR---------GAVSSLAFRKGTSELYSASA-------DRSV  268 (479)
T ss_pred             EcCCCcEEEecCC-----CceEEEecCcccchhhcccccc---------cceeeeeeecCccceeeeec-------CCce
Confidence            445667777 654     3457899999977776632212         13445555556778888764       5589


Q ss_pred             EEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEE
Q 012294          303 KFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIE  382 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~  382 (466)
                      .+|+......|=++-+|+|-+.++++-.....+ .||+-|.++-+-++            .+..+.+-. -.+++=-.++
T Consensus       269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v-tVGgrDrT~rlwKi------------~eesqlifr-g~~~sidcv~  334 (479)
T KOG0299|consen  269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCV-TVGGRDRTVRLWKI------------PEESQLIFR-GGEGSIDCVA  334 (479)
T ss_pred             EEEehhHhHHHHHHhCCccceeeechhcccceE-EeccccceeEEEec------------cccceeeee-CCCCCeeeEE
Confidence            999999999888999999999998888777772 24446666322222            233333332 0122334556


Q ss_pred             EECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc--cCCCC--ceEEE-eeecceeEEEeeccce
Q 012294          383 CHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT--DMGGS--KITNL-SFGGNKMFVTRKGQQT  455 (466)
Q Consensus       383 ~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~--~i~~~-~~gg~r~f~~~~~~~~  455 (466)
                      ..+..=|++  .+|+|-+||-.....       ..+    +++-=|-.+  +.-.+  =|+.+ .++|.-||++=.-.-.
T Consensus       335 ~In~~HfvsGSdnG~IaLWs~~KKkp-------lf~----~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~  403 (479)
T KOG0299|consen  335 FINDEHFVSGSDNGSIALWSLLKKKP-------LFT----SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC  403 (479)
T ss_pred             EecccceeeccCCceEEEeeecccCc-------eeE----eeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence            667777776  789999999863211       001    111111111  11222  46665 4799999999999999


Q ss_pred             EEEeccCCC
Q 012294          456 VEVWQSSSR  464 (466)
Q Consensus       456 ~~vw~~~~~  464 (466)
                      |-+|.+...
T Consensus       404 vrLW~i~~g  412 (479)
T KOG0299|consen  404 VRLWKIEDG  412 (479)
T ss_pred             eEEEEecCC
Confidence            999998653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.99  E-value=1.9  Score=44.95  Aligned_cols=87  Identities=9%  Similarity=0.046  Sum_probs=60.9

Q ss_pred             CceeecCcceeeEEeeCCeEEEEe--ecCCCCc-ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC-ceEEEEEee
Q 012294          267 DIESAIPATKLRWVSSYNLLLASG--SHSDISK-VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS-AIYKVGINS  342 (466)
Q Consensus       267 ~~w~~~~~~k~~~~~~~~~Lyv~G--g~~g~~~-~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~-~i~~v~~~~  342 (466)
                      .+|.....-.+...+-++.|||..  +-.|+.. --+.|..+|.++.+++-... -+..--.+++++|+. .||..+..+
T Consensus       243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s  321 (352)
T TIGR02658       243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGD  321 (352)
T ss_pred             cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCC
Confidence            356655533355666789999943  1111111 12379999999999885542 133446889999999 999999999


Q ss_pred             CceeEeeccccC
Q 012294          343 GEVSYMDLRKLG  354 (466)
Q Consensus       343 g~l~~~dlr~~~  354 (466)
                      ++|.++|+.+..
T Consensus       322 ~~VsViD~~t~k  333 (352)
T TIGR02658       322 KTLYIFDAETGK  333 (352)
T ss_pred             CcEEEEECcCCe
Confidence            999999997764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=91.95  E-value=1.7  Score=43.06  Aligned_cols=112  Identities=23%  Similarity=0.399  Sum_probs=82.0

Q ss_pred             eEE-eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCC
Q 012294          278 RWV-SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDS  356 (466)
Q Consensus       278 ~~~-~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~  356 (466)
                      .|+ +-.|-|+-+||       .+-+.+||.++++..-+.++|.|-.-.+.-...++-|+ -|+.+|++-+=|++.... 
T Consensus       120 m~ldP~enSi~~AgG-------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~-  190 (325)
T KOG0649|consen  120 MWLDPSENSILFAGG-------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKH-  190 (325)
T ss_pred             eEeccCCCcEEEecC-------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccce-
Confidence            455 36777777887       45799999999999999999988877777767777777 688999999999998664 


Q ss_pred             CCeEEeccCCccccccccccce---eEEEEECCEEEEEeCCeEEEeEee
Q 012294          357 SEWICLGDGRKMVNGKRKEGFG---CKIECHANQVFCGKGGEIELWSEI  402 (466)
Q Consensus       357 ~~W~~~~~~~~~m~~~~~~~~~---~~~~~~~~~lf~~~~~~~~v~~~~  402 (466)
                         |.+=+-.|.-+..+|. .+   -.|+....|+.|..|-.+.+|-=.
T Consensus       191 ---v~~ie~yk~~~~lRp~-~g~wigala~~edWlvCGgGp~lslwhLr  235 (325)
T KOG0649|consen  191 ---VSMIEPYKNPNLLRPD-WGKWIGALAVNEDWLVCGGGPKLSLWHLR  235 (325)
T ss_pred             ---eEEeccccChhhcCcc-cCceeEEEeccCceEEecCCCceeEEecc
Confidence               3222212211111232 22   357778899999999999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=91.94  E-value=1.7  Score=44.16  Aligned_cols=76  Identities=17%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             CcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          273 PATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       273 ~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      |.|.+.|..-++.||.+|-       ..+|..||.++++++.....|.++.-.+..++-|..|-.=+.-+|++-+-|+|+
T Consensus        92 AVM~l~~~~d~s~i~S~gt-------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGT-------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeEeeeeccCCCEEEEecC-------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            5788889888888887774       558999999999999999999877777666665555544444888999999997


Q ss_pred             cCC
Q 012294          353 LGD  355 (466)
Q Consensus       353 ~~~  355 (466)
                      -+.
T Consensus       165 k~~  167 (338)
T KOG0265|consen  165 KEA  167 (338)
T ss_pred             cch
Confidence            664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.74  E-value=1.6  Score=43.77  Aligned_cols=105  Identities=15%  Similarity=0.061  Sum_probs=69.8

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      -++.+|.--|  ..|.   +++..||+.+.+=....++  +..+.+++.++++||. -..     .+.+-+||+.|++++
T Consensus        54 ~~g~LyESTG--~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   54 DDGTLYESTG--LYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKKI  123 (264)
T ss_dssp             ETTEEEEEEC--STTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTTTEEE
T ss_pred             CCCEEEEeCC--CCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEccccceEE
Confidence            3578888877  5564   5677889999875555555  6666779999999999 654     567899999998877


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV  312 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~  312 (466)
                      .+..-    .+.+|-..        .-+..|+.+-|       ++.+..+||.+=+.
T Consensus       124 ~~~~y----~~EGWGLt--------~dg~~Li~SDG-------S~~L~~~dP~~f~~  161 (264)
T PF05096_consen  124 GTFPY----PGEGWGLT--------SDGKRLIMSDG-------SSRLYFLDPETFKE  161 (264)
T ss_dssp             EEEE-----SSS--EEE--------ECSSCEEEE-S-------SSEEEEE-TTT-SE
T ss_pred             EEEec----CCcceEEE--------cCCCEEEEECC-------ccceEEECCcccce
Confidence            76654    45788753        23556666655       44789999987653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.71  E-value=1  Score=44.52  Aligned_cols=93  Identities=23%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             CCeeEEEecCCCCcccccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVK  317 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~  317 (466)
                      .+.|.+||.+|       |++.- |.+..-    ..+.....-..-+.++|+      +.++|++||=|+.+  +|=.+.
T Consensus        80 Dk~v~vwDV~T-------Gkv~Rr~rgH~a----qVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   80 DKAVQVWDVNT-------GKVDRRFRGHLA----QVNTVRFNEESSVVASGS------FDSSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             CceEEEEEccc-------Ceeeeecccccc----eeeEEEecCcceEEEecc------ccceeEEEEcccCCCCccchhh
Confidence            36899999999       55431 212211    111112224455667776      45689999999986  222222


Q ss_pred             CCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +..|..+.+.+....   -..|+.+|++-.-|||+-
T Consensus       143 ea~D~V~Si~v~~he---IvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  143 EAKDGVSSIDVAEHE---IVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             hhcCceeEEEecccE---EEeeccCCcEEEEEeecc
Confidence            335666665555433   337889999999999983

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=91.63  E-value=1.1  Score=47.24  Aligned_cols=80  Identities=15%  Similarity=0.289  Sum_probs=60.1

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      .+++-+||...-+.+..|..-+    |-     .+++..-+-.|...|.++|      .+++.+|.+++-+++.+..+|.
T Consensus       366 Dnt~kVWDLR~r~~ly~ipAH~----nl-----VS~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  366 DNTCKVWDLRMRSELYTIPAHS----NL-----VSQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             CCcEEEeeecccccceeccccc----ch-----hhheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCc
Confidence            6889999999844444443322    11     2344455567888888884      5589999999999999999999


Q ss_pred             ccccceeeecCCCce
Q 012294          321 DCFSDVTVSDNLSAI  335 (466)
Q Consensus       321 d~~~~~~v~~~~~~i  335 (466)
                      +++..++.+.++..|
T Consensus       431 ~kV~s~Dis~d~~~i  445 (459)
T KOG0272|consen  431 GKVISLDISPDSQAI  445 (459)
T ss_pred             cceEEEEeccCCceE
Confidence            999999999999883

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.53  E-value=1.2  Score=49.87  Aligned_cols=146  Identities=18%  Similarity=0.244  Sum_probs=98.7

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      |.-+|-++  +|+...|=+++..+|..--   +..+ +-+.++.+..|.=|+ .|.    ...+|-.||..|       |
T Consensus       505 GyYFatas--~D~tArLWs~d~~~PlRif---aghl-sDV~cv~FHPNs~Y~aTGS----sD~tVRlWDv~~-------G  567 (707)
T KOG0263|consen  505 GYYFATAS--HDQTARLWSTDHNKPLRIF---AGHL-SDVDCVSFHPNSNYVATGS----SDRTVRLWDVST-------G  567 (707)
T ss_pred             ceEEEecC--CCceeeeeecccCCchhhh---cccc-cccceEEECCcccccccCC----CCceEEEEEcCC-------C
Confidence            34445555  6666655555555544321   2222 333446677777777 432    157899999999       4


Q ss_pred             c-cccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEE
Q 012294          260 Q-NEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKV  338 (466)
Q Consensus       260 ~-~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v  338 (466)
                      . .|+|.|..-   +...+... -+|+-.|+|+.+|      .|-+||..+++.|-++.+|.+..-.+..+.+|.. .++
T Consensus       568 ~~VRiF~GH~~---~V~al~~S-p~Gr~LaSg~ed~------~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v-Las  636 (707)
T KOG0263|consen  568 NSVRIFTGHKG---PVTALAFS-PCGRYLASGDEDG------LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV-LAS  636 (707)
T ss_pred             cEEEEecCCCC---ceEEEEEc-CCCceEeecccCC------cEEEEEcCCCcchhhhhcccCceeEEEEecCCCE-EEe
Confidence            3 346755331   22333333 3788888888555      6999999999999999999888888999999876 668


Q ss_pred             EEeeCceeEeeccccC
Q 012294          339 GINSGEVSYMDLRKLG  354 (466)
Q Consensus       339 ~~~~g~l~~~dlr~~~  354 (466)
                      |+.+-.|-+=|+...-
T Consensus       637 gg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  637 GGADNSVRLWDLTKVI  652 (707)
T ss_pred             cCCCCeEEEEEchhhc
Confidence            8888888888888765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=91.19  E-value=3.3  Score=43.39  Aligned_cols=150  Identities=17%  Similarity=0.342  Sum_probs=98.4

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc---
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL---  353 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~---  353 (466)
                      .+..+ ++.-+|.|+  |    ..+|++||+.|.++.-+.++|..=..-++-++|+..|- -|.++|++-+=|=.+-   
T Consensus       121 ~~fsp-~g~~l~tGs--G----D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-SG~~dg~I~lwdpktg~~~  192 (480)
T KOG0271|consen  121 VQFSP-TGSRLVTGS--G----DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-SGSKDGSIRLWDPKTGQQI  192 (480)
T ss_pred             EEecC-CCceEEecC--C----CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhh-ccccCCeEEEecCCCCCcc
Confidence            33444 566667776  3    34899999999999999999844447777899988743 4558888766663332   


Q ss_pred             ----CCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc
Q 012294          354 ----GDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT  429 (466)
Q Consensus       354 ----~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  429 (466)
                          -++-.|..-=...| ++- .++ |+ .+|      =++++++|-+|.-.             ..+. =+++-|+  
T Consensus       193 g~~l~gH~K~It~Lawep-~hl-~p~-~r-~la------s~skDg~vrIWd~~-------------~~~~-~~~lsgH--  246 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEP-LHL-VPP-CR-RLA------SSSKDGSVRIWDTK-------------LGTC-VRTLSGH--  246 (480)
T ss_pred             cccccCcccceeEEeecc-ccc-CCC-cc-cee------cccCCCCEEEEEcc-------------CceE-EEEeccC--
Confidence                23455643222222 221 133 32 222      24589999999875             1111 2233333  


Q ss_pred             cCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          430 DMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       430 ~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                         ...||-+--||+-|..+-+-...|.||+...
T Consensus       247 ---T~~VTCvrwGG~gliySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  247 ---TASVTCVRWGGEGLIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             ---ccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence               5589999999999999999999999998754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=91.07  E-value=17  Score=40.56  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=63.7

Q ss_pred             cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294          299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG  378 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~  378 (466)
                      -|+|..||+..++.+=+.+-+..-...++++++++.+| +.+.++.++-..+...  ...||..+.+.-.-.      .=
T Consensus       224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~--~~~wv~~~~r~~h~h------dv  294 (691)
T KOG2048|consen  224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTN--KSEWVINSRRDLHAH------DV  294 (691)
T ss_pred             CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCC--ccceeeeccccCCcc------cc
Confidence            45899999999998888877743335578888889977 5667888744444333  345998776443311      22


Q ss_pred             eEEEEECCEEEEEeCCeEEEeEee
Q 012294          379 CKIECHANQVFCGKGGEIELWSEI  402 (466)
Q Consensus       379 ~~~~~~~~~lf~~~~~~~~v~~~~  402 (466)
                      -++++|++++|..--|-.=+.+..
T Consensus       295 rs~av~~~~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  295 RSMAVIENALISGGRDFTLAICSS  318 (691)
T ss_pred             eeeeeecceEEecceeeEEEEccc
Confidence            368889999988754444444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.83  E-value=9.6  Score=40.90  Aligned_cols=165  Identities=23%  Similarity=0.289  Sum_probs=91.6

Q ss_pred             CCCccccceeeeeecccC-CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCC
Q 012294          163 KSTILTHFTAVDSLLALS-PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGR  238 (466)
Q Consensus       163 m~~~R~~~~~v~sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~  238 (466)
                      |.+.+.+...+.++++.. +.+++.|+  +++.     |-.+|..+.+=...-+- ...+.++++- ++.+++ +.+   
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs--~D~t-----vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGS--DDGT-----VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEec--CCCc-----EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            344444444555555543 46888888  7664     44455554221111000 2222223333 234444 533   


Q ss_pred             cCCCeeEEEecCCCCc--cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294          239 RNSNSIMVYDINSLKP--VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       239 ~~l~sVE~YDp~t~~~--~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~  316 (466)
                        ...|.+||..+++.  +.++..      ..-.. +.+..++.+-...|++...       .+.+..||.+.+.++-++
T Consensus       309 --d~~i~vwd~~~~~~~~~~~~~~------~~~~~-~~~~~~fsp~~~~ll~~~~-------d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  309 --DGTIRVWDLETGSKLCLKLLSG------AENSA-PVTSVQFSPNGKYLLSASL-------DRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             --CccEEEEECCCCceeeeecccC------CCCCC-ceeEEEECCCCcEEEEecC-------CCeEEEEEccCCcceeee
Confidence              56789999999652  233322      11111 2334444433333333322       448999999999999998


Q ss_pred             cCCc---ccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          317 KDEV---DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       317 ~~~~---d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++.   .|+-++.....+..|| .|..++.+++-|+.+.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~-sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIY-SGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             cccCCcceeEecccccCCCCeEE-EEeCCceEEEEeCCccc
Confidence            8883   2554555555666655 88899999999998855

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=90.73  E-value=1.9  Score=45.51  Aligned_cols=163  Identities=20%  Similarity=0.354  Sum_probs=106.0

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCC--CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR--SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr--t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      -+.|++.+.-||++.|.|      +.+-+||.|  ++++.-....|.-.+--+++.+-+.-|.+-|+.+++|+.-|||.|
T Consensus       232 DV~~h~~h~~lF~sv~dd------~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  232 DVAWHPLHEDLFGSVGDD------GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             hhhccccchhhheeecCC------CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence            346889999999999844      478899999  556556666665555566788899999999999999999999999


Q ss_pred             CCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCC--Ccccceee-ccccCc
Q 012294          354 GDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGG--PLEERVFR-KNLMGR  427 (466)
Q Consensus       354 ~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~r-~~~~~~  427 (466)
                      ..     ++-.    +.+ ...+ ..+.-.=+..-|+++  -++-|-||-=.-.+.+.+.|-+  +-.|-+|= +     
T Consensus       306 ~~-----~lh~----~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-----  370 (422)
T KOG0264|consen  306 NK-----PLHT----FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-----  370 (422)
T ss_pred             cc-----Ccee----ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec-----
Confidence            83     1111    111 1111 222223345667776  5677889965422222111111  22444441 1     


Q ss_pred             cccCCCCceEEEeeecce--eEEEeeccceEEEeccC
Q 012294          428 VTDMGGSKITNLSFGGNK--MFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       428 ~~~~~~~~i~~~~~gg~r--~f~~~~~~~~~~vw~~~  462 (466)
                         -..++|++|+.-=++  +-++=.|.+...||+-+
T Consensus       371 ---GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  371 ---GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ---CcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence               145689998887664  56778889999999865

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.61  E-value=26  Score=40.44  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             eeCCeEEEEee-cCC--CCcccceEEEEeCCCCeeeeEEcC--C--------c--------ccccceeeecCCCceEEEE
Q 012294          281 SSYNLLLASGS-HSD--ISKVTGNIKFWDIRSGNVAWEVKD--E--------V--------DCFSDVTVSDNLSAIYKVG  339 (466)
Q Consensus       281 ~~~~~Lyv~Gg-~~g--~~~~~~sVe~yDprt~~~vW~~~~--~--------~--------d~~~~~~v~~~~~~i~~v~  339 (466)
                      ..+++||+.+. .++  .....+.|..||.+|++.+|.+.-  |        +        ..-..++.|++.+.||.=-
T Consensus       314 V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt  393 (764)
T TIGR03074       314 VAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM  393 (764)
T ss_pred             EECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC
Confidence            46888887432 111  112367899999999999999852  1        1        1114456777777777511


Q ss_pred             -----------------EeeCceeEeeccccC
Q 012294          340 -----------------INSGEVSYMDLRKLG  354 (466)
Q Consensus       340 -----------------~~~g~l~~~dlr~~~  354 (466)
                                       -+.+.|..+|+++-+
T Consensus       394 Gn~~pd~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       394 GNQTPDQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             CCccccccCCccccCcccccceEEEEeCCCCc
Confidence                             145677778887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.41  E-value=1.1  Score=46.36  Aligned_cols=159  Identities=8%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCcee-EEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQ-AIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~-Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      =+|.+.-+.= +.+|.......+.||++.+-....+.+ +.... .-.+.+|.||. -.. +.. -.-...|...|    
T Consensus       155 ~DGsl~~v~L-d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls-g~~-~~~~~~~~~~t----  227 (342)
T PF06433_consen  155 GDGSLLTVTL-DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS-GDS-AKFGKPWSLLT----  227 (342)
T ss_dssp             TTSCEEEEEE-TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET-TSS-EEEEEEEESS-----
T ss_pred             cCCceEEEEE-CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc-CCc-ccccCcccccC----
Confidence            3555555443 124554444557889988766555444 33222 12577888888 322 111 12233333322    


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc----eEEEEeCCCCeee--eEEcCCcccccceeee
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG----NIKFWDIRSGNVA--WEVKDEVDCFSDVTVS  329 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~----sVe~yDprt~~~v--W~~~~~~d~~~~~~v~  329 (466)
                       +-.+     +.+|.+..=--+..+...|+|||. .|.|..+.+.    .|=.||+.+++.|  |+...+.   ..++|+
T Consensus       228 -~~e~-----~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~---~Si~Vs  297 (342)
T PF06433_consen  228 -DAEK-----ADGWRPGGWQLIAYHAASGRLYVL-MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI---DSIAVS  297 (342)
T ss_dssp             -HHHH-----HTTEEE-SSS-EEEETTTTEEEEE-EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE---SEEEEE
T ss_pred             -cccc-----ccCcCCcceeeeeeccccCeEEEE-ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc---ceEEEc
Confidence             1111     256766544445666789999985 5666543222    4777899999998  5553333   467888


Q ss_pred             cCCC-ceEEEEEeeCceeEeeccccC
Q 012294          330 DNLS-AIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       330 ~~~~-~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .+.. .||.+...+++|++.|.++.+
T Consensus       298 qd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  298 QDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            8776 667777788999999999844

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.65  E-value=21  Score=40.64  Aligned_cols=170  Identities=18%  Similarity=0.238  Sum_probs=98.4

Q ss_pred             EEcC----CceeeEecCC-CCCCCccccceeeeeecc-cCCcEEEEecccCCCc-eecccee--eeeCCCCceeecCCCC
Q 012294          147 VSHG----SKITSFDWSM-RKKSTILTHFTAVDSLLA-LSPGVAAAGATDFSGL-QVLDLEN--GYVKETLNWENVTRSS  217 (466)
Q Consensus       147 va~G----G~ve~YDW~~-a~m~~~R~~~~~v~sl~~-l~~~lYaiGG~~~~g~-~~l~svE--~ydp~t~~W~~va~Mr  217 (466)
                      +|+|    |+.-+|+|.. .-....-.++..++++++ -+|++.|.|+  .||. ...++.-  |+...+..       .
T Consensus       322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteH-------t  392 (893)
T KOG0291|consen  322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEH-------T  392 (893)
T ss_pred             EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccC-------C
Confidence            3556    4567899987 222222233444555544 4567888888  5553 2222222  22222221       2


Q ss_pred             CceeEEEE--ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc--ceeeEEeeC--CeEEEEee
Q 012294          218 STVQAIGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA--TKLRWVSSY--NLLLASGS  291 (466)
Q Consensus       218 ~~~~Ava~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--~k~~~~~~~--~~Lyv~Gg  291 (466)
                      +++.|+.+  .++.|+-..-     ..+|-.||...       .+      |-=+...|  .....+.++  |.|..+|.
T Consensus       393 s~Vt~v~f~~~g~~llssSL-----DGtVRAwDlkR-------Yr------NfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSL-----DGTVRAWDLKR-------YR------NFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             CceEEEEEEecCCEEEEeec-----CCeEEeeeecc-------cc------eeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            33333332  2233443222     45788899877       22      22333333  344455555  88888887


Q ss_pred             cCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294          292 HSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       292 ~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                      .|-     =.|-+|+.+||+..=-.++|.-+...+.++.+++.|+ =++++-++-+=|
T Consensus       455 ~d~-----F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La-S~SWDkTVRiW~  506 (893)
T KOG0291|consen  455 QDS-----FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA-SGSWDKTVRIWD  506 (893)
T ss_pred             cce-----EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE-eccccceEEEEE
Confidence            443     2599999999998888889977888888999999865 566777754433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=89.19  E-value=1.6  Score=49.42  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=78.8

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccc-cccCCceeecCcceeeEE--eeCCeEEEEeecCCCCcc-
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNE-IYGTDIESAIPATKLRWV--SSYNLLLASGSHSDISKV-  298 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~--~~~~~Lyv~Gg~~g~~~~-  298 (466)
                      +..++|..++|..     -.+|++||..+       |.-+ .|+.....   .+.+.-+  -..|.+++++|.+|.-.+ 
T Consensus       456 vs~CGNF~~IG~S-----~G~Id~fNmQS-------Gi~r~sf~~~~ah---~~~V~gla~D~~n~~~vsa~~~Gilkfw  520 (910)
T KOG1539|consen  456 VSFCGNFVFIGYS-----KGTIDRFNMQS-------GIHRKSFGDSPAH---KGEVTGLAVDGTNRLLVSAGADGILKFW  520 (910)
T ss_pred             EeccCceEEEecc-----CCeEEEEEccc-------CeeecccccCccc---cCceeEEEecCCCceEEEccCcceEEEE
Confidence            4556676776433     45899999999       4433 13211111   1222222  245666777776654211 


Q ss_pred             ----------------------------------cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCc
Q 012294          299 ----------------------------------TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGE  344 (466)
Q Consensus       299 ----------------------------------~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~  344 (466)
                                                        .-+|.+||..|-++|.++.+|++++-|+++++|+..|- ....|+.
T Consensus       521 ~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli-sasmD~t  599 (910)
T KOG1539|consen  521 DFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI-SASMDST  599 (910)
T ss_pred             ecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE-EeecCCc
Confidence                                              12599999999999999999999999999999999965 5558899


Q ss_pred             eeEeeccccC
Q 012294          345 VSYMDLRKLG  354 (466)
Q Consensus       345 l~~~dlr~~~  354 (466)
                      +..=||=+..
T Consensus       600 Ir~wDlpt~~  609 (910)
T KOG1539|consen  600 IRTWDLPTGT  609 (910)
T ss_pred             EEEEeccCcc
Confidence            9888887754

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.12  E-value=4.3  Score=41.10  Aligned_cols=119  Identities=23%  Similarity=0.387  Sum_probs=68.8

Q ss_pred             EEEEec---CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294          230 LFVSFE---SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD  306 (466)
Q Consensus       230 IYaGg~---~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD  306 (466)
                      |||||.   .|.-....|=.||+.+       .+|..++.+  -....+.+.|+ .++.|||+|-..-..+...++-.||
T Consensus         1 v~VGG~F~~aGsL~C~~lC~yd~~~-------~qW~~~g~~--i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd   70 (281)
T PF12768_consen    1 VYVGGSFTSAGSLPCPGLCLYDTDN-------SQWSSPGNG--ISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYD   70 (281)
T ss_pred             CEEeeecCCCCCcCCCEEEEEECCC-------CEeecCCCC--ceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEe
Confidence            577543   2332367888999999       443333222  11113355666 6889999987443322345799999


Q ss_pred             CCCCeeeeEEcCCcc------ccccee-eecCCCceEEEEE-eeCceeEeeccccCCCCCeEEecc
Q 012294          307 IRSGNVAWEVKDEVD------CFSDVT-VSDNLSAIYKVGI-NSGEVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       307 prt~~~vW~~~~~~d------~~~~~~-v~~~~~~i~~v~~-~~g~l~~~dlr~~~~~~~W~~~~~  364 (466)
                      ..+.+  |+....+.      +..-+. ...+.+.+|..|. .+|.-   .|-+-. ...|..+..
T Consensus        71 ~~~~~--w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~---~l~~~d-Gs~W~~i~~  130 (281)
T PF12768_consen   71 FKNQT--WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGST---FLMKYD-GSSWSSIGS  130 (281)
T ss_pred             cCCCe--eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCc---eEEEEc-CCceEeccc
Confidence            99999  97765421      112222 2336777776666 56663   333444 456776665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.09  E-value=29  Score=40.12  Aligned_cols=127  Identities=15%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             EEEECCeEEEEec--CCC---cCCCeeEEEecCC----CC--cccc-----ccccccc---cCCceeecCcceeeEEeeC
Q 012294          223 IGSSDKHLFVSFE--SGR---RNSNSIMVYDINS----LK--PVNE-----IGQNEIY---GTDIESAIPATKLRWVSSY  283 (466)
Q Consensus       223 va~l~~~IYaGg~--~g~---~~l~sVE~YDp~t----~~--~~~~-----~~~~~~~---~~~~w~~~~~~k~~~~~~~  283 (466)
                      -++.++.||+|+.  +..   .....|-.||.+|    |+  +..+     +.....|   +++.|...+     .=+-.
T Consensus       312 P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s-----~D~~~  386 (764)
T TIGR03074       312 PLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVAS-----YDEKL  386 (764)
T ss_pred             CEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceE-----EcCCC
Confidence            4677999999542  111   1145789999999    21  0000     0000011   112222211     01245


Q ss_pred             CeEEEEeecCCC-----------CcccceEEEEeCCCCeeeeEEcC-Cc-----cccccee---eec-CCC--ceEEEEE
Q 012294          284 NLLLASGSHSDI-----------SKVTGNIKFWDIRSGNVAWEVKD-EV-----DCFSDVT---VSD-NLS--AIYKVGI  340 (466)
Q Consensus       284 ~~Lyv~Gg~~g~-----------~~~~~sVe~yDprt~~~vW~~~~-~~-----d~~~~~~---v~~-~~~--~i~~v~~  340 (466)
                      |++|+-.|...+           ..+.++|=..|++|++.+|..-. |.     |.-+...   +.. ++.  .+-.++.
T Consensus       387 glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~  466 (764)
T TIGR03074       387 GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT  466 (764)
T ss_pred             CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC
Confidence            788886653222           23677999999999999999854 21     1111111   222 332  1223666


Q ss_pred             eeCceeEeeccccC
Q 012294          341 NSGEVSYMDLRKLG  354 (466)
Q Consensus       341 ~~g~l~~~dlr~~~  354 (466)
                      ++|.+|+.|-++-+
T Consensus       467 K~G~~~vlDr~tG~  480 (764)
T TIGR03074       467 KQGQIYVLDRRTGE  480 (764)
T ss_pred             CCCEEEEEECCCCC
Confidence            99999999988744

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=88.99  E-value=4  Score=42.69  Aligned_cols=116  Identities=22%  Similarity=0.291  Sum_probs=73.5

Q ss_pred             CCceeEEEEECC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          217 SSTVQAIGSSDK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       217 r~~~~Ava~l~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      +..+.+|...+. .+|-+..     ..+|-+||.+|-+.+.++-....|          .....++ ...|.++|+.   
T Consensus       260 t~~Vs~V~w~d~~v~yS~Sw-----DHTIk~WDletg~~~~~~~~~ksl----------~~i~~~~-~~~Ll~~gss---  320 (423)
T KOG0313|consen  260 TEPVSSVVWSDATVIYSVSW-----DHTIKVWDLETGGLKSTLTTNKSL----------NCISYSP-LSKLLASGSS---  320 (423)
T ss_pred             ccceeeEEEcCCCceEeecc-----cceEEEEEeecccceeeeecCcce----------eEeeccc-ccceeeecCC---
Confidence            444454444432 3554222     468999999993322222221110          0112223 5566777773   


Q ss_pred             CcccceEEEEeCCCC--eee-eEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          296 SKVTGNIKFWDIRSG--NVA-WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       296 ~~~~~sVe~yDprt~--~~v-W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                         ...+++||||++  ++| =++.+|..=...+.-++.+-.+|+=+++++.+-+=|+|+-.
T Consensus       321 ---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  321 ---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence               336999999998  344 77778854556777788999999999999999999999854

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.98  E-value=2.3  Score=42.22  Aligned_cols=112  Identities=9%  Similarity=0.054  Sum_probs=69.2

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCC----CceeecC-CC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEec
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKET----LNWENVT-RS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDI  249 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t----~~W~~va-~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp  249 (466)
                      -+|.+...||  +.+  -.+.+..|+|..    ..|...+ .|   |.+..+..--||.|++ ||..    ..+.|.|++
T Consensus        76 ~dG~ll~tGG--~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~----~~t~E~~P~  147 (243)
T PF07250_consen   76 PDGRLLQTGG--DND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN----NPTYEFWPP  147 (243)
T ss_pred             CCCCEEEeCC--CCc--cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC----CCcccccCC
Confidence            5789999999  432  223445566654    6798775 47   8888855555778999 8874    346777766


Q ss_pred             CCCCccccccccccccCCceeecCcc---------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294          250 NSLKPVNEIGQNEIYGTDIESAIPAT---------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       250 ~t~~~~~~~~~~~~~~~~~w~~~~~~---------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~  316 (466)
                      ...      +..    ...|.....+         ...|+.-+|.||+.+..        .-.+||+.++++|-++
T Consensus       148 ~~~------~~~----~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------~s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  148 KGP------GPG----PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------GSIIYDYKTNTVVRTL  205 (243)
T ss_pred             ccC------CCC----ceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------CcEEEeCCCCeEEeeC
Confidence            441      000    0111111111         23466678999988862        3578999999866554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=88.93  E-value=2.1  Score=44.29  Aligned_cols=172  Identities=16%  Similarity=0.329  Sum_probs=108.6

Q ss_pred             CCeeEEEecCCCCccccc-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEI-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      .++|-+||..+.+....+ ||             ...+-++..++++.++|..      .++|+.||..+++++-+...|
T Consensus       216 DnTikiWD~n~~~c~~~L~GH-------------tGSVLCLqyd~rviisGSS------DsTvrvWDv~tge~l~tlihH  276 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILTGH-------------TGSVLCLQYDERVIVSGSS------DSTVRVWDVNTGEPLNTLIHH  276 (499)
T ss_pred             cCceEEeccccHHHHHhhhcC-------------CCcEEeeeccceEEEecCC------CceEEEEeccCCchhhHHhhh
Confidence            789999999984322221 11             1233455678888888873      448999999999999999888


Q ss_pred             cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEE
Q 012294          320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIE  397 (466)
Q Consensus       320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~  397 (466)
                      .+....+  ...++. -+-|+++-.+.+=||-+-..      +.- ++.+.+  .+ ..+-++-+..++.++  .+-.|.
T Consensus       277 ceaVLhl--rf~ng~-mvtcSkDrsiaVWdm~sps~------it~-rrVLvG--Hr-AaVNvVdfd~kyIVsASgDRTik  343 (499)
T KOG0281|consen  277 CEAVLHL--RFSNGY-MVTCSKDRSIAVWDMASPTD------ITL-RRVLVG--HR-AAVNVVDFDDKYIVSASGDRTIK  343 (499)
T ss_pred             cceeEEE--EEeCCE-EEEecCCceeEEEeccCchH------HHH-HHHHhh--hh-hheeeeccccceEEEecCCceEE
Confidence            6655554  444444 34788888888887766432      111 011221  12 445556666665555  556799


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCC
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~  464 (466)
                      ||+--     .         .-|=|-+-|+    .+| |.-+..- |||.|+=+-.+.|-+||-+..
T Consensus       344 vW~~s-----t---------~efvRtl~gH----kRG-IAClQYr-~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  344 VWSTS-----T---------CEFVRTLNGH----KRG-IACLQYR-DRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             EEecc-----c---------eeeehhhhcc----ccc-ceehhcc-CeEEEecCCCceEEEEecccc
Confidence            99863     1         0123333343    344 5555543 589999999999999997643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.78  E-value=12  Score=38.46  Aligned_cols=164  Identities=19%  Similarity=0.250  Sum_probs=89.1

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCC--CeeeeEEcC----CcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS--GNVAWEVKD----EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt--~~~vW~~~~----~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      +.+.+-+++||++.....   ..+.|..|+...  ++  .+...    .+..=+.+++++++..||+..-.+|.+.+.+|
T Consensus        42 l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~--L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGT--LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             EEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTE--EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcce--eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            334457899999977431   234566666554  45  22221    24444678899999999988888999999999


Q ss_pred             cccCC--C--CCeEEeccCCcccccccccc-ceeEEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceee
Q 012294          351 RKLGD--S--SEWICLGDGRKMVNGKRKEG-FGCKIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFR  421 (466)
Q Consensus       351 r~~~~--~--~~W~~~~~~~~~m~~~~~~~-~~~~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r  421 (466)
                      ..-+.  .  ..+..-..+. ...  +..+ .-+.+...  +++||+.  ..|.|.+|.--    ..   .+.|++    
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~-~~~--rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~----~~---~~~l~~----  182 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGP-NPD--RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID----DD---TGKLTP----  182 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEES-STT--TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-----TT---S-TEEE----
T ss_pred             cCCcccceeeeecccCCCCC-ccc--ccccccceeEEECCCCCEEEEEecCCCEEEEEEEe----CC---CceEEE----
Confidence            88653  1  0010000100 000  0111 22233333  5689988  45666666552    11   112332    


Q ss_pred             ccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccC
Q 012294          422 KNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       422 ~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      ...+ +.  ..|.-=.++.|  -|.+|||+.+.-+.|.|++-.
T Consensus       183 ~~~~-~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  183 VDSI-KV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEEE-EC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eecc-cc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            1111 11  11222344444  678999999999999988754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=88.49  E-value=0.83  Score=50.41  Aligned_cols=86  Identities=16%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccc
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF  377 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~  377 (466)
                      |..+||+||.++.+.-=.+.+|.|.+.+++-+++|..|--|| ++|.|.+-.=|+-+     .++-+++-..-   -|+.
T Consensus       698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e-----~pv~Eg~gpvg---tRgA  768 (1012)
T KOG1445|consen  698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSRE-----QPVYEGKGPVG---TRGA  768 (1012)
T ss_pred             ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCC-----CccccCCCCcc---Ccce
Confidence            566999999999987788999999999999999999976665 89999999888876     34555333211   2335


Q ss_pred             eeEEEEECCEEEEEe
Q 012294          378 GCKIECHANQVFCGK  392 (466)
Q Consensus       378 ~~~~~~~~~~lf~~~  392 (466)
                      ...-||-+--|.|+.
T Consensus       769 Ri~wacdgr~viv~G  783 (1012)
T KOG1445|consen  769 RILWACDGRIVIVVG  783 (1012)
T ss_pred             eEEEEecCcEEEEec
Confidence            566666666666553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.39  E-value=16  Score=37.76  Aligned_cols=187  Identities=14%  Similarity=0.121  Sum_probs=102.8

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCc--eeecCCC---CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCC
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRS---SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLK  253 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W~~va~M---r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~  253 (466)
                      -++++|+-.   .+|     .+-.+|+.+..  |+....-   ..+.. +...+|+||+|..++     .+-+||+.+  
T Consensus        67 ~dg~v~~~~---~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~-~~~~~G~i~~g~~~g-----~~y~ld~~~--  130 (370)
T COG1520          67 GDGTVYVGT---RDG-----NIFALNPDTGLVKWSYPLLGAVAQLSGP-ILGSDGKIYVGSWDG-----KLYALDAST--  130 (370)
T ss_pred             eCCeEEEec---CCC-----cEEEEeCCCCcEEecccCcCcceeccCc-eEEeCCeEEEecccc-----eEEEEECCC--
Confidence            788888862   344     34466777776  9654431   12333 445589999955544     688999988  


Q ss_pred             ccccccccccccCCceeecCcc--e--eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc--cccccee
Q 012294          254 PVNEIGQNEIYGTDIESAIPAT--K--LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV--DCFSDVT  327 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~w~~~~~~--k--~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~  327 (466)
                           |.      ..|+.-.+.  +  -.-+..++.+|+..       ..+.+-+.|+.+++..|+..-+.  +..-...
T Consensus       131 -----G~------~~W~~~~~~~~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~  192 (370)
T COG1520         131 -----GT------LVWSRNVGGSPYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGS  192 (370)
T ss_pred             -----Cc------EEEEEecCCCeEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccC
Confidence                 55      347765555  1  12334677777765       14578999999999999953321  0000011


Q ss_pred             eecCCCceEEEEEe--eCceeEeeccccCCCCCeEE----eccC-----Ccc-ccccccccceeEEEEECCEEEEEeCC-
Q 012294          328 VSDNLSAIYKVGIN--SGEVSYMDLRKLGDSSEWIC----LGDG-----RKM-VNGKRKEGFGCKIECHANQVFCGKGG-  394 (466)
Q Consensus       328 v~~~~~~i~~v~~~--~g~l~~~dlr~~~~~~~W~~----~~~~-----~~~-m~~~~~~~~~~~~~~~~~~lf~~~~~-  394 (466)
                      .....+.+| ++..  ++.|+..|... + ...|..    -...     .+. ....---+.+.-...+++++|+.... 
T Consensus       193 ~~~~~~~vy-~~~~~~~~~~~a~~~~~-G-~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~  269 (370)
T COG1520         193 PAIASGTVY-VGSDGYDGILYALNAED-G-TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT  269 (370)
T ss_pred             ceeecceEE-EecCCCcceEEEEEccC-C-cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence            113444444 3434  55677776654 2 344541    1110     011 11100011333466777888887544 


Q ss_pred             eEEEeEee
Q 012294          395 EIELWSEI  402 (466)
Q Consensus       395 ~~~v~~~~  402 (466)
                      .=++|+..
T Consensus       270 G~~~W~~~  277 (370)
T COG1520         270 GELIWSFP  277 (370)
T ss_pred             CceEEEEe
Confidence            44567765

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=88.38  E-value=0.68  Score=49.93  Aligned_cols=126  Identities=15%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             CCceeEEEEECC--eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-----cceeeEE-----eeC
Q 012294          217 SSTVQAIGSSDK--HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-----ATKLRWV-----SSY  283 (466)
Q Consensus       217 r~~~~Ava~l~~--~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-----~~k~~~~-----~~~  283 (466)
                      |.++. .+...+  +||. ||.+|...+...-.|.-..               |+|+.+-     |.++.++     ...
T Consensus       261 RgGHQ-MV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e---------------~~W~~iN~~t~~PG~RsCHRMVid~S~  324 (723)
T KOG2437|consen  261 RGGHQ-MVIDVQTECVYLYGGWDGTQDLADFWAYSVKE---------------NQWTCINRDTEGPGARSCHRMVIDISR  324 (723)
T ss_pred             cCcce-EEEeCCCcEEEEecCcccchhHHHHHhhcCCc---------------ceeEEeecCCCCCcchhhhhhhhhhhH
Confidence            66666 666555  8999 9999987788888888877               6676654     3343332     355


Q ss_pred             CeEEEEeecCCCCcc-----cceEEEEeCCCCeeeeEEcCCccc-------c--cceeeecCCCceEEEEE--------e
Q 012294          284 NLLLASGSHSDISKV-----TGNIKFWDIRSGNVAWEVKDEVDC-------F--SDVTVSDNLSAIYKVGI--------N  341 (466)
Q Consensus       284 ~~Lyv~Gg~~g~~~~-----~~sVe~yDprt~~~vW~~~~~~d~-------~--~~~~v~~~~~~i~~v~~--------~  341 (466)
                      .+||..|-+-+.+..     ...+=.||..+++  |..-.-.|.       +  ..|.|+.+..+||+-|+        +
T Consensus       325 ~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~  402 (723)
T KOG2437|consen  325 RKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQ  402 (723)
T ss_pred             hHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCcc
Confidence            689999887665421     1134556666665  765422110       1  23566667777998887        4


Q ss_pred             eCceeEeeccccCCCCCeEEecc
Q 012294          342 SGEVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       342 ~g~l~~~dlr~~~~~~~W~~~~~  364 (466)
                      .+-||+-|+-.    -.|.+++.
T Consensus       403 f~GLYaf~~~~----~~w~~l~e  421 (723)
T KOG2437|consen  403 FSGLYAFNCQC----QTWKLLRE  421 (723)
T ss_pred             ccceEEEecCC----ccHHHHHH
Confidence            56688887643    34555544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=88.36  E-value=3.4  Score=43.31  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC--CCCe
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--SSEW  359 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--~~~W  359 (466)
                      ..|++||+--      -.++|.+.|..+++++.+.....+.-+.+..++|+..+|+. ..+|.|.+.||.+.+-  +   
T Consensus         4 ~~~l~~V~~~------~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~-~rdg~vsviD~~~~~~v~~---   73 (369)
T PF02239_consen    4 TGNLFYVVER------GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA-NRDGTVSVIDLATGKVVAT---   73 (369)
T ss_dssp             GGGEEEEEEG------GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE-ETTSEEEEEETTSSSEEEE---
T ss_pred             CccEEEEEec------CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE-cCCCeEEEEECCcccEEEE---
Confidence            3567777664      24589999999999998886555444556678999999965 6799999999999773  2   


Q ss_pred             EEeccCCccccccccccceeEEEEE-CCEEEEEeCCeEEEeEeeee
Q 012294          360 ICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCGKGGEIELWSEIVM  404 (466)
Q Consensus       360 ~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~~~~~~v~~~~~~  404 (466)
                      +..+...+.+.. .+.|.+.-+++| .++|-+.....+|+-..+..
T Consensus        74 i~~G~~~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   74 IKVGGNPRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EE-SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             EecCCCcceEEE-cCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            333332232332 234455555554 45666666666766666543

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.58  E-value=11  Score=39.28  Aligned_cols=197  Identities=15%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             eEEE--Eec----CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce-eeEEeeCCeEEEEeecCCCCcccce
Q 012294          229 HLFV--SFE----SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK-LRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       229 ~IYa--Gg~----~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k-~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      .+|+  .++    .|.+ ..-||.||+.|+++..||--..   ...-...+--. .+...-+..|||.--  -   -..+
T Consensus        49 ~~y~a~T~~sR~~rG~R-tDvv~~~D~~TL~~~~EI~iP~---k~R~~~~~~~~~~~ls~dgk~~~V~N~--T---Pa~S  119 (342)
T PF06433_consen   49 TIYVAETFYSRGTRGER-TDVVEIWDTQTLSPTGEIEIPP---KPRAQVVPYKNMFALSADGKFLYVQNF--T---PATS  119 (342)
T ss_dssp             EEEEEEEEEEETTEEEE-EEEEEEEETTTTEEEEEEEETT---S-B--BS--GGGEEE-TTSSEEEEEEE--S---SSEE
T ss_pred             EEEEEEEEEeccccccc-eeEEEEEecCcCcccceEecCC---cchheecccccceEEccCCcEEEEEcc--C---CCCe
Confidence            4776  443    1333 7899999999999999776532   00011111111 122234455666543  1   2458


Q ss_pred             EEEEeCCCCeeeeEEcCCc---------ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccc
Q 012294          302 IKFWDIRSGNVAWEVKDEV---------DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGK  372 (466)
Q Consensus       302 Ve~yDprt~~~vW~~~~~~---------d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~  372 (466)
                      |.+-|..++++|-|..-|+         +.|+  .++.||+.+...=..+|...   .++-+     +--.+..+..+..
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~--~lC~DGsl~~v~Ld~~Gk~~---~~~t~-----~F~~~~dp~f~~~  189 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS--MLCGDGSLLTVTLDADGKEA---QKSTK-----VFDPDDDPLFEHP  189 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEETTEEE--EEETTSCEEEEEETSTSSEE---EEEEE-----ESSTTTS-B-S--
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecCCCceE--EEecCCceEEEEECCCCCEe---Eeecc-----ccCCCCccccccc
Confidence            9999999999998887664         2222  34445555333333445532   11111     1122222222210


Q ss_pred             c-cc-cceeEEEEECCEEEEE--eCCeEEEeEee-eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeE
Q 012294          373 R-KE-GFGCKIECHANQVFCG--KGGEIELWSEI-VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMF  447 (466)
Q Consensus       373 ~-~~-~~~~~~~~~~~~lf~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f  447 (466)
                      . .+ +..---..|.|+||..  .++.++. ..+ .+..+..++.+      +|         .+|-.+..+.-..+|||
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~------Wr---------PGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADG------WR---------PGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTT------EE---------E-SSS-EEEETTTTEEE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccC------cC---------CcceeeeeeccccCeEE
Confidence            0 01 1223336889999985  4555433 222 11111111112      56         36768888888999999


Q ss_pred             EEeec-------cceEEEec
Q 012294          448 VTRKG-------QQTVEVWQ  460 (466)
Q Consensus       448 ~~~~~-------~~~~~vw~  460 (466)
                      |+...       ..+=|||.
T Consensus       254 vLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEE
T ss_pred             EEecCCCCCCccCCceEEEE
Confidence            98641       23557775

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.58  E-value=9.2  Score=44.92  Aligned_cols=72  Identities=19%  Similarity=0.340  Sum_probs=57.0

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC-CcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      +.|-.-.|.||+.|+       ..+|+.||...-.++-..-- ...+...++.+-.++.|+++|=.||.|-+-|.|+...
T Consensus      1171 ~dWqQ~~G~Ll~tGd-------~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-------VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred             eehhhhCCeEEecCC-------eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence            457778999999997       34899999999987755422 2555566666777788999999999999999999884

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=87.50  E-value=6.9  Score=41.92  Aligned_cols=191  Identities=13%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             ccceeeeeecccCC-cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CC--eEEEEecCCCcC
Q 012294          168 THFTAVDSLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DK--HLFVSFESGRRN  240 (466)
Q Consensus       168 ~~~~~v~sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~--~IYaGg~~g~~~  240 (466)
                      ..++.++|+-+... .+..++|  +++.-.+--+   |-++|.  .+.+|   ++-...++.. +|  .|++++.     
T Consensus       211 ps~~~I~sv~FHp~~plllvaG--~d~~lrifqv---DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----  278 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAG--LDGTLRIFQV---DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----  278 (514)
T ss_pred             cCcCCceEEEecCCCceEEEec--CCCcEEEEEe---cCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----
Confidence            33455666656554 4777888  7765332222   344444  45555   2222112222 33  3665433     


Q ss_pred             CCeeEEEecCC--CCccccccccccccCCceeecCccee-eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          241 SNSIMVYDINS--LKPVNEIGQNEIYGTDIESAIPATKL-RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       241 l~sVE~YDp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~-~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      -.-...||.++  .+.+..+.-++         -..|.. .+...++ ..++.|+      .++|-+.-..|++  |-.+
T Consensus       279 rky~ysyDle~ak~~k~~~~~g~e---------~~~~e~FeVShd~~-fia~~G~------~G~I~lLhakT~e--li~s  340 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTKLKPPYGVE---------EKSMERFEVSHDSN-FIAIAGN------NGHIHLLHAKTKE--LITS  340 (514)
T ss_pred             ceEEEEeeccccccccccCCCCcc---------cchhheeEecCCCC-eEEEccc------CceEEeehhhhhh--hhhe
Confidence            45678999998  22233322211         011211 1222344 4556664      4478888888888  5433


Q ss_pred             CC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEE-EECCEEEEE--eC
Q 012294          318 DE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIE-CHANQVFCG--KG  393 (466)
Q Consensus       318 ~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~-~~~~~lf~~--~~  393 (466)
                      =+ .-..++++.+.++-.|+. ++-+|++|+.|||.......|+-=+.    .       +|-.++ ..++++||+  .-
T Consensus       341 ~KieG~v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~----v-------~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  341 FKIEGVVSDFTFSSDSKELLA-SGGTGEVYVWNLRQNSCLHRFVDDGS----V-------HGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             eeeccEEeeEEEecCCcEEEE-EcCCceEEEEecCCcceEEEEeecCc----c-------ceeeeeecCCCceEEeccCc
Confidence            22 224588889989988884 55567999999999765444442221    0       444444 244556655  34


Q ss_pred             CeEEEeE
Q 012294          394 GEIELWS  400 (466)
Q Consensus       394 ~~~~v~~  400 (466)
                      |-|-++.
T Consensus       409 GiVNIYd  415 (514)
T KOG2055|consen  409 GIVNIYD  415 (514)
T ss_pred             ceEEEec
Confidence            4566666

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.33  E-value=11  Score=40.09  Aligned_cols=154  Identities=17%  Similarity=0.302  Sum_probs=95.4

Q ss_pred             CCeeEEEecCC---CCccccccccc----------cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294          241 SNSIMVYDINS---LKPVNEIGQNE----------IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI  307 (466)
Q Consensus       241 l~sVE~YDp~t---~~~~~~~~~~~----------~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp  307 (466)
                      ...||+||+.-   -.|.-.+|...          .+++.+-+ -|...+.|-....-|.|+|+      ...+|-+||.
T Consensus       201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgs------aD~TV~lWD~  273 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGS------ADKTVKLWDV  273 (463)
T ss_pred             CceeEEeccccccccccceeechhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecC------CCceEEEEEc
Confidence            45899999986   44444555221          11110111 01123344445556778887      3558999999


Q ss_pred             CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-CCCeEEeccCCccccccccccceeEEEEECC
Q 012294          308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIECHAN  386 (466)
Q Consensus       308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~  386 (466)
                      .++++.-++..+++.+..+.--.....+---|++++.+.+.|+|..+. +-.|-..+.--|.... ..-++..-+..-+|
T Consensus       274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~-~~se~~f~~~tddG  352 (463)
T KOG0270|consen  274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD-PHSENSFFVSTDDG  352 (463)
T ss_pred             CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec-CCCceeEEEecCCc
Confidence            999999999888888888888888888777888999999999996443 3345555543333221 01114444444456


Q ss_pred             EEEEE--eCCeEEEeEee
Q 012294          387 QVFCG--KGGEIELWSEI  402 (466)
Q Consensus       387 ~lf~~--~~~~~~v~~~~  402 (466)
                      .|+-.  |+..=-||+-.
T Consensus       353 ~v~~~D~R~~~~~vwt~~  370 (463)
T KOG0270|consen  353 TVYYFDIRNPGKPVWTLK  370 (463)
T ss_pred             eEEeeecCCCCCceeEEE
Confidence            66554  55555677664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=87.04  E-value=1.1  Score=49.36  Aligned_cols=75  Identities=19%  Similarity=0.351  Sum_probs=62.4

Q ss_pred             CcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE--EcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294          273 PATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE--VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       273 ~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~--~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      |.+.+.|++.+-+|.-+.|       ..++++||..+++++=.  ..+|.-.+-.+...+.+..+|+-|+.||++.+.|+
T Consensus       102 AifDl~wapge~~lVsasG-------DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  102 AIFDLKWAPGESLLVSASG-------DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             eeEeeccCCCceeEEEccC-------CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            4577889985555555555       34899999999998865  88887677788889999999999999999999999


Q ss_pred             cccC
Q 012294          351 RKLG  354 (466)
Q Consensus       351 r~~~  354 (466)
                      |...
T Consensus       175 R~n~  178 (720)
T KOG0321|consen  175 RCNG  178 (720)
T ss_pred             eccc
Confidence            9876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=86.27  E-value=7.1  Score=40.90  Aligned_cols=72  Identities=19%  Similarity=0.416  Sum_probs=45.5

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-eeeEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-VAWEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~~~~  319 (466)
                      ..-+-.|||.+.+  ..|-+|..-|+..|-.    .+.|.+.+-.++++|.||+      ++.+||.|+-+ ..-....|
T Consensus       321 dr~irl~DPR~~~--gs~v~~s~~gH~nwVs----svkwsp~~~~~~~S~S~D~------t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  321 DRHIRLWDPRTGD--GSVVSQSLIGHKNWVS----SVKWSPTNEFQLVSGSYDN------TVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             CCceeecCCCCCC--CceeEEeeecchhhhh----heecCCCCceEEEEEecCC------eEEEEEeccCCCcceeeccC
Confidence            3457899999921  1111222114444542    4678899999999999666      79999999887 44444444


Q ss_pred             ccccc
Q 012294          320 VDCFS  324 (466)
Q Consensus       320 ~d~~~  324 (466)
                      .|+..
T Consensus       389 ~DKvl  393 (423)
T KOG0313|consen  389 NDKVL  393 (423)
T ss_pred             CceEE
Confidence            44443

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=85.83  E-value=0.34  Score=50.79  Aligned_cols=85  Identities=12%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--Cc---eeE-------cCCchhHHHHhcccccCccccCCCC
Q 012294           19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--TH---RFI-------DRDPELFSILLSLLRTGNLPSKAKA   86 (466)
Q Consensus        19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~~---~fi-------DRDp~~F~~IL~ylrtG~l~~~~~~   86 (466)
                      ...+.+|.|--=|...+.|+--|.+ .  .||.+||++  .+   .+|       ..|-..|...|.=||..++.+.  -
T Consensus        66 q~enSDv~l~alg~eWrlHk~yL~Q-S--~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~--l  140 (488)
T KOG4682|consen   66 QGENSDVILEALGFEWRLHKPYLFQ-S--EYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK--L  140 (488)
T ss_pred             cCCCcceehhhccceeeeeeeeeec-c--HHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc--H
Confidence            3457899999999999999999987 3  499999997  21   222       3566889999999999888875  3


Q ss_pred             cChHHHHHhhccccchhhHHhh
Q 012294           87 FDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        87 ~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                      .++..++..|.+++++.+++.|
T Consensus       141 ~dv~gvlAaA~~lqldgl~qrC  162 (488)
T KOG4682|consen  141 SDVVGVLAAACLLQLDGLIQRC  162 (488)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH
Confidence            5678899999999999999999

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=85.46  E-value=9.8  Score=40.40  Aligned_cols=119  Identities=15%  Similarity=0.233  Sum_probs=86.5

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      +.+=+.++.|+|.|+.|+      +|.+||+|.= ++.=++.+|.|-+..+.-++.+..|++-.+.++.|-+=||.+.+.
T Consensus       278 ~~fnp~~~~ilAT~S~D~------tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADK------TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             EEeCCCCCceEEeccCCC------cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            345568899999998544      8999999985 555777788888899999999999999999999999999999986


Q ss_pred             CCCeEEeccCCccccccccccceeEEE-----EECCEEEEE--eCCeEEEeEee
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIE-----CHANQVFCG--KGGEIELWSEI  402 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~-----~~~~~lf~~--~~~~~~v~~~~  402 (466)
                      +-+|..=.++++-+-= .-+|...+|.     -..-|+.||  .+..+.||.=.
T Consensus       352 eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  352 EQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            4445544444443110 0123444443     234677776  67789999765

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=84.54  E-value=1.4  Score=47.59  Aligned_cols=158  Identities=13%  Similarity=0.161  Sum_probs=92.5

Q ss_pred             CccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEE--CCeEEE-Eec
Q 012294          165 TILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSS--DKHLFV-SFE  235 (466)
Q Consensus       165 ~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l--~~~IYa-Gg~  235 (466)
                      ..|.+|..|-.  .-+.+||.-||  .+|...|...-.|....|.|+.+..=      |+.+- .+.-  ..+||. |-+
T Consensus       259 ~~RgGHQMV~~--~~~~CiYLYGG--WdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR-MVid~S~~KLYLlG~Y  333 (723)
T KOG2437|consen  259 GMRGGHQMVID--VQTECVYLYGG--WDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR-MVIDISRRKLYLLGRY  333 (723)
T ss_pred             cccCcceEEEe--CCCcEEEEecC--cccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh-hhhhhhHhHHhhhhhc
Confidence            45777766641  12238999999  99999999999999999999977532      43332 3322  337999 765


Q ss_pred             CCCcC------CCeeEEEecCCCCccccccccccccCCceeecC--------cc-----eeeEEeeCCeEEEEeecCCCC
Q 012294          236 SGRRN------SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--------AT-----KLRWVSSYNLLLASGSHSDIS  296 (466)
Q Consensus       236 ~g~~~------l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--------~~-----k~~~~~~~~~Lyv~Gg~~g~~  296 (466)
                      -+.+.      -..+-+||..|               +.|..+.        |.     .+.+..-.++|||.||..-..
T Consensus       334 ~~sS~r~~~s~RsDfW~FDi~~---------------~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~  398 (723)
T KOG2437|consen  334 LDSSVRNSKSLRSDFWRFDIDT---------------NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC  398 (723)
T ss_pred             cccccccccccccceEEEecCC---------------ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC
Confidence            33221      34577888877               3344322        11     122334566799999954332


Q ss_pred             c--ccceEEEEeCCCCeeeeEEcCC---------cccccc----eeeecCCCceEEEEEeeCc
Q 012294          297 K--VTGNIKFWDIRSGNVAWEVKDE---------VDCFSD----VTVSDNLSAIYKVGINSGE  344 (466)
Q Consensus       297 ~--~~~sVe~yDprt~~~vW~~~~~---------~d~~~~----~~v~~~~~~i~~v~~~~g~  344 (466)
                      .  ..+-...||-  +...|+....         .+...+    |-..+++..+|.-+++.-+
T Consensus       399 ~e~~f~GLYaf~~--~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  399 NEPQFSGLYAFNC--QCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             CCccccceEEEec--CCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            1  1122455554  4444876432         111111    1234588899988875443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=84.54  E-value=42  Score=35.28  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             ceeeeeCCCCcee--ecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccccc-ccccccCCceeecC
Q 012294          199 LENGYVKETLNWE--NVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG-QNEIYGTDIESAIP  273 (466)
Q Consensus       199 svE~ydp~t~~W~--~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~-~~~~~~~~~w~~~~  273 (466)
                      .|.|||.+.|+-.  ...-| +++-++...  .+.|+.|+.     ...+-+||..|-..|..|. |..          +
T Consensus       216 ~VKCwDLe~nkvIR~YhGHl-S~V~~L~lhPTldvl~t~gr-----Dst~RvWDiRtr~~V~~l~GH~~----------~  279 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHL-SGVYCLDLHPTLDVLVTGGR-----DSTIRVWDIRTRASVHVLSGHTN----------P  279 (460)
T ss_pred             eeEEEechhhhhHHHhcccc-ceeEEEeccccceeEEecCC-----cceEEEeeecccceEEEecCCCC----------c
Confidence            5889999988732  11122 222212222  233444543     4678999999944444443 211          1


Q ss_pred             cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      ...+..-+.++.+|. |.|      .++|++||.+.|+..=+...|
T Consensus       280 V~~V~~~~~dpqvit-~S~------D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  280 VASVMCQPTDPQVIT-GSH------DSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             ceeEEeecCCCceEE-ecC------CceEEEeeeccCceeEeeecc
Confidence            223333345666654 333      458999999999855555444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=84.31  E-value=3.8  Score=43.21  Aligned_cols=54  Identities=20%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ...|+.||.|+..++-+.-..+ .+..++++.++..|- .|+-++.|=++|||..+
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             ccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-eecCCCceeeeeccccc
Confidence            4579999999999888875555 778888999999877 67999999999999988

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=83.97  E-value=2.1  Score=44.63  Aligned_cols=110  Identities=26%  Similarity=0.398  Sum_probs=68.0

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC---eeeeEEcCCcccccceeeec---CCCceEEEEEeeCceeEee
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG---NVAWEVKDEVDCFSDVTVSD---NLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~~~~~~d~~~~~~v~~---~~~~i~~v~~~~g~l~~~d  349 (466)
                      -++|.+...-+|++++-||      +|+.||.|++   .+|=. +.|.   +|+.|-.   .-. +.+-|+-+|+|.+-|
T Consensus       262 DLqWSptE~~vfaScS~Dg------sIrIWDiRs~~~~~~~~~-kAh~---sDVNVISWnr~~~-lLasG~DdGt~~iwD  330 (440)
T KOG0302|consen  262 DLQWSPTEDGVFASCSCDG------SIRIWDIRSGPKKAAVST-KAHN---SDVNVISWNRREP-LLASGGDDGTLSIWD  330 (440)
T ss_pred             hhccCCccCceEEeeecCc------eEEEEEecCCCccceeEe-eccC---CceeeEEccCCcc-eeeecCCCceEEEEE
Confidence            4677788899999998544      8999999999   44433 5566   6766654   222 556788999999999


Q ss_pred             ccccCCCCCeEEeccCCccccc-cccccceeEEEEECCEEEEEe--CCeEEEeEeeee
Q 012294          350 LRKLGDSSEWICLGDGRKMVNG-KRKEGFGCKIECHANQVFCGK--GGEIELWSEIVM  404 (466)
Q Consensus       350 lr~~~~~~~W~~~~~~~~~m~~-~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~~~~~  404 (466)
                      ||.... .  .+++.    .+. |.+= ....-+-+..-+|++-  ++.|.+|-=-.+
T Consensus       331 LR~~~~-~--~pVA~----fk~Hk~pI-tsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  331 LRQFKS-G--QPVAT----FKYHKAPI-TSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             hhhccC-C--Cccee----EEeccCCe-eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            999873 2  12222    110 0011 2222233345556553  456888976544

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=83.96  E-value=40  Score=32.13  Aligned_cols=98  Identities=16%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             cceeeeeCCCCceeecCCC-----CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCcee-
Q 012294          198 DLENGYVKETLNWENVTRS-----SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIES-  270 (466)
Q Consensus       198 ~svE~ydp~t~~W~~va~M-----r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~-  270 (466)
                      ..+|.|+..+++|..+.+.     ....  .+.++|.||= ...........|..||..+               ..|. 
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~---------------E~f~~  132 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSS---------------ERFKE  132 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEccc---------------ceEee
Confidence            4789999999999987643     1122  3578998888 4332211123899999998               3344 


Q ss_pred             ecC-cc-------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-CeeeeEE
Q 012294          271 AIP-AT-------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAWEV  316 (466)
Q Consensus       271 ~~~-~~-------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~  316 (466)
                      .++ |.       ......++|.|.++......    ..+++|=-+. ++..|+-
T Consensus       133 ~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~----~~~~IWvl~d~~~~~W~k  183 (230)
T TIGR01640       133 FIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT----NNFDLWVLNDAGKQEWSK  183 (230)
T ss_pred             eeecCccccccccceEEEEECCEEEEEEecCCC----CcEEEEEECCCCCCceeE
Confidence            122 11       12344578888887764331    2488886552 2223763

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=83.94  E-value=30  Score=35.43  Aligned_cols=51  Identities=22%  Similarity=0.384  Sum_probs=40.6

Q ss_pred             ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeecc
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLR  351 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr  351 (466)
                      ..+.|..||||.|.+--..++|.|.+..+.++++|+.   +.+  .+-.|-+.|.|
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~---llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF---LLSNSMDNTVRVWDVR  246 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCc---cccccccceEEEEEec
Confidence            4567999999999999999999999999999999998   444  34444444444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=83.22  E-value=13  Score=40.60  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             eeeEecCC-CCCCCccccc--eeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEE
Q 012294          153 ITSFDWSM-RKKSTILTHF--TAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIG  224 (466)
Q Consensus       153 ve~YDW~~-a~m~~~R~~~--~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava  224 (466)
                      ...|-|.. ...-+.-..+  ..++|+.+. +|...|||-  .+|     .++.||..+.+  .+..|    ...++ +-
T Consensus       197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~--~~g-----~v~iwD~~~~k--~~~~~~~~h~~rvg-~l  266 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGT--SDG-----TVQIWDVKEQK--KTRTLRGSHASRVG-SL  266 (484)
T ss_pred             ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEee--cCC-----eEEEEehhhcc--ccccccCCcCceeE-EE
Confidence            34577877 3332222222  334454443 477888887  555     57888888776  45555    23344 33


Q ss_pred             EECCeEEE-EecCCCcCCCeeEEEecCCCCcccc-cc-ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccce
Q 012294          225 SSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNE-IG-QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       225 ~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~-~~-~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      .-++.+.. |..+     ..|-.+|..+-+...+ +. |..-          .-++.|. .++..+|+||.      .+.
T Consensus       267 aW~~~~lssGsr~-----~~I~~~dvR~~~~~~~~~~~H~qe----------VCgLkws-~d~~~lASGgn------DN~  324 (484)
T KOG0305|consen  267 AWNSSVLSSGSRD-----GKILNHDVRISQHVVSTLQGHRQE----------VCGLKWS-PDGNQLASGGN------DNV  324 (484)
T ss_pred             eccCceEEEecCC-----CcEEEEEEecchhhhhhhhcccce----------eeeeEEC-CCCCeeccCCC------ccc
Confidence            44556666 5443     4577888877333322 22 1110          1233444 47888899984      447


Q ss_pred             EEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeeccc
Q 012294          302 IKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLRK  352 (466)
Q Consensus       302 Ve~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~  352 (466)
                      |-.||-.+..+.-...+|....-.++-++-...|-++|+  .++++-|=|-..
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence            999999888877777777644456677888888888887  788877766664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.19  E-value=38  Score=39.62  Aligned_cols=192  Identities=15%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             eeecCCcEEEEcCCce-----------eeEe----cCC---CCCCCccccceeeeeeccc-CCcEEEEecccCCCceecc
Q 012294          138 ATTNYGTLHVSHGSKI-----------TSFD----WSM---RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLD  198 (466)
Q Consensus       138 ~a~~~g~lyva~GG~v-----------e~YD----W~~---a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~  198 (466)
                      .+.+++.-+ |.||++           ..++    |..   .+..+.+.+.+.++|+.+- +|+.+|.|+  .+..   -
T Consensus        20 dv~pdg~~~-aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS--DD~~---v   93 (942)
T KOG0973|consen   20 DVHPDGVKF-ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS--DDRL---V   93 (942)
T ss_pred             EecCCceeE-ecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc--Ccce---E
Confidence            456677777 456532           1132    544   2334567777888887664 566777777  4432   1


Q ss_pred             ceeee--------------eCCCCceeecCCCCCceeEEEE----ECCeEEE-EecCCCcCCCeeEEEecCCCCccccc-
Q 012294          199 LENGY--------------VKETLNWENVTRSSSTVQAIGS----SDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEI-  258 (466)
Q Consensus       199 svE~y--------------dp~t~~W~~va~Mr~~~~Ava~----l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~-  258 (466)
                      .+-.|              .+..-+|..+..+|..-+-|..    -++.+.| ++     ..++|-.||-.|...+..| 
T Consensus        94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s-----~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS-----LDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec-----ccceEEEEccccceeeeeee
Confidence            11122              2333355555444211111111    1355666 33     2689999999994333332 


Q ss_pred             cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC------cccccceeeecCC
Q 012294          259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE------VDCFSDVTVSDNL  332 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~------~d~~~~~~v~~~~  332 (466)
                      +|+.--.|-.|-          + -|.-+|+=.      ...+|..|+.-+=.++....+|      ..-|.++.-++||
T Consensus       169 ~H~s~VKGvs~D----------P-~Gky~ASqs------dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG  231 (942)
T KOG0973|consen  169 GHQSLVKGVSWD----------P-IGKYFASQS------DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG  231 (942)
T ss_pred             cccccccceEEC----------C-ccCeeeeec------CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence            222211223333          2 233333333      3558999983332355555566      5678888999999


Q ss_pred             CceEEEEEeeCceeEeeccccCCCCCeE
Q 012294          333 SAIYKVGINSGEVSYMDLRKLGDSSEWI  360 (466)
Q Consensus       333 ~~i~~v~~~~g~l~~~dlr~~~~~~~W~  360 (466)
                      ..|-..-+.+|-..-+  --++ .+.|.
T Consensus       232 ~~las~nA~n~~~~~~--~Iie-R~tWk  256 (942)
T KOG0973|consen  232 HHLASPNAVNGGKSTI--AIIE-RGTWK  256 (942)
T ss_pred             CeecchhhccCCccee--EEEe-cCCce
Confidence            9987777766654333  3445 36776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=82.97  E-value=26  Score=35.88  Aligned_cols=139  Identities=21%  Similarity=0.329  Sum_probs=82.4

Q ss_pred             EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCC
Q 012294          279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSE  358 (466)
Q Consensus       279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~  358 (466)
                      ..+..+.|.|+. +||      ++++||..+++.-=++ .++-+..+.+..+ .+.+| +|+-+|+|-..||..-..   
T Consensus        21 f~~~~~~LLvss-WDg------slrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~-~G~~dg~vr~~Dln~~~~---   87 (323)
T KOG1036|consen   21 FSPSSSDLLVSS-WDG------SLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIV-TGGLDGQVRRYDLNTGNE---   87 (323)
T ss_pred             EcCcCCcEEEEe-ccC------cEEEEeccchhhhhhe-ecCCceeeeeccC-CceEE-EeccCceEEEEEecCCcc---
Confidence            336677777776 666      7999999998532222 1233445555555 34445 788999999999987552   


Q ss_pred             eEEeccCCccccccccccceeEEEEE-CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCce
Q 012294          359 WICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKI  436 (466)
Q Consensus       359 W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i  436 (466)
                       .-++...        ++..|.--+| .|+|.+. =+..|++|..-    .+     ......           ..+.+|
T Consensus        88 -~~igth~--------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R----~~-----~~~~~~-----------d~~kkV  138 (323)
T KOG1036|consen   88 -DQIGTHD--------EGIRCIEYSYEVGCVISGSWDKTIKFWDPR----NK-----VVVGTF-----------DQGKKV  138 (323)
T ss_pred             -eeeccCC--------CceEEEEeeccCCeEEEcccCccEEEEecc----cc-----cccccc-----------ccCceE
Confidence             2233311        1122222222 3444443 57889999874    12     111111           234489


Q ss_pred             EEEeeecceeEEEeeccceEEEec
Q 012294          437 TNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       437 ~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      -.++.+||||-|.=+|.+ |-+|+
T Consensus       139 y~~~v~g~~LvVg~~~r~-v~iyD  161 (323)
T KOG1036|consen  139 YCMDVSGNRLVVGTSDRK-VLIYD  161 (323)
T ss_pred             EEEeccCCEEEEeecCce-EEEEE
Confidence            999999999999655544 33554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.81  E-value=2.6  Score=41.79  Aligned_cols=91  Identities=16%  Similarity=0.240  Sum_probs=57.2

Q ss_pred             eeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc-
Q 012294          200 ENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA-  274 (466)
Q Consensus       200 vE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-  274 (466)
                      .-.|||.+++++.+.-.   -++.+ +..-||.+.. ||+.. . .+.+-.|+|.+       ..    +...|...+. 
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~~-G-~~~ir~~~p~~-------~~----~~~~w~e~~~~  113 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDND-G-NKAIRIFTPCT-------SD----GTCDWTESPND  113 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCCc-c-ccceEEEecCC-------CC----CCCCceECccc
Confidence            34689999999877654   22333 3334667666 88743 2 56888999876       11    1134655442 


Q ss_pred             cee-eEEe-----eCCeEEEEeecCCCCcccceEEEEeCCC
Q 012294          275 TKL-RWVS-----SYNLLLASGSHSDISKVTGNIKFWDIRS  309 (466)
Q Consensus       275 ~k~-~~~~-----~~~~Lyv~Gg~~g~~~~~~sVe~yDprt  309 (466)
                      |.. +|.+     .+|.++|+||...     .+.|.|+++.
T Consensus       114 m~~~RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~  149 (243)
T PF07250_consen  114 MQSGRWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKG  149 (243)
T ss_pred             ccCCCccccceECCCCCEEEEeCcCC-----CcccccCCcc
Confidence            322 3543     6899999999663     3589887743

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=81.79  E-value=14  Score=37.22  Aligned_cols=74  Identities=20%  Similarity=0.354  Sum_probs=57.7

Q ss_pred             cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      +++..|-+++..|.+ |..      .++|..||.++| +.|-+-.+|...+.|+-.+++... |.-++++-+-...|.++
T Consensus       150 it~a~Wg~l~~~ii~-Ghe------~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  150 ITSALWGPLGETIIA-GHE------DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRT  221 (327)
T ss_pred             eeeeeecccCCEEEE-ecC------CCcEEEEEcccCceeeechhhhccccccccccCCcce-EEecccCccceeeeccc
Confidence            455668788777654 332      457999999998 666666777778888888888765 87888999988999999


Q ss_pred             cCC
Q 012294          353 LGD  355 (466)
Q Consensus       353 ~~~  355 (466)
                      |+.
T Consensus       222 l~v  224 (327)
T KOG0643|consen  222 LEV  224 (327)
T ss_pred             eee
Confidence            996

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=81.66  E-value=4.3  Score=41.23  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=58.0

Q ss_pred             cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee--e-eEEcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294          274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV--A-WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~--v-W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      -+..-|-.++..+..+..      ..-++-.||.+++..  | =..+.|-...-|++....+..+|+-++.+|.+-|.||
T Consensus       153 lTSFDWne~dp~~igtSS------iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  153 LTSFDWNEVDPNLIGTSS------IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccccccccCCcceeEeec------ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            345667777776665554      344789999999732  3 3455664455888999999999999999999999999


Q ss_pred             cccCC
Q 012294          351 RKLGD  355 (466)
Q Consensus       351 r~~~~  355 (466)
                      |+++.
T Consensus       227 R~leH  231 (364)
T KOG0290|consen  227 RSLEH  231 (364)
T ss_pred             ccccc
Confidence            99995

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=81.48  E-value=2.5  Score=29.35  Aligned_cols=40  Identities=25%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          310 GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       310 ~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      ++++|+..-+..-.+.+++  .+..|| |+..+|.||..|.++
T Consensus         1 G~~~W~~~~~~~~~~~~~v--~~g~vy-v~~~dg~l~ald~~t   40 (40)
T PF13570_consen    1 GKVLWSYDTGGPIWSSPAV--AGGRVY-VGTGDGNLYALDAAT   40 (40)
T ss_dssp             S-EEEEEE-SS---S--EE--CTSEEE-EE-TTSEEEEEETT-
T ss_pred             CceeEEEECCCCcCcCCEE--ECCEEE-EEcCCCEEEEEeCCC
Confidence            4567888766534444444  567788 777899999999763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.39  E-value=7  Score=44.24  Aligned_cols=136  Identities=22%  Similarity=0.339  Sum_probs=91.3

Q ss_pred             CCeeEEEecCCCCccccccccc--cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNE--IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~--~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      ...|-+||...-     +..+.  +|...   ..++.++.|+....-|.++|+.||      +|.+||-|.++-+=++..
T Consensus       109 nG~i~vWdlnk~-----~rnk~l~~f~EH---~Rs~~~ldfh~tep~iliSGSQDg------~vK~~DlR~~~S~~t~~~  174 (839)
T KOG0269|consen  109 NGVISVWDLNKS-----IRNKLLTVFNEH---ERSANKLDFHSTEPNILISGSQDG------TVKCWDLRSKKSKSTFRS  174 (839)
T ss_pred             CCcEEEEecCcc-----ccchhhhHhhhh---ccceeeeeeccCCccEEEecCCCc------eEEEEeeecccccccccc
Confidence            557788888771     12222  23111   135678999999999999999666      799999999975555555


Q ss_pred             CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE---eCCe
Q 012294          319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG---KGGE  395 (466)
Q Consensus       319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~---~~~~  395 (466)
                      ..++.=|+..++.-.-.|.-+--+|.|-.-|||.-.   .|+.       +.. .-.|-...+--|=+|.|.+   |++-
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~-------k~~-AH~GpV~c~nwhPnr~~lATGGRDK~  243 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEK-------KLT-AHNGPVLCLNWHPNREWLATGGRDKM  243 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHH-------Hhh-cccCceEEEeecCCCceeeecCCCcc
Confidence            677778999999888899888899999999999844   2221       110 0112222233344666665   6667


Q ss_pred             EEEeEe
Q 012294          396 IELWSE  401 (466)
Q Consensus       396 ~~v~~~  401 (466)
                      |-||--
T Consensus       244 vkiWd~  249 (839)
T KOG0269|consen  244 VKIWDM  249 (839)
T ss_pred             EEEEec
Confidence            888854

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.24  E-value=64  Score=33.62  Aligned_cols=199  Identities=13%  Similarity=0.162  Sum_probs=104.5

Q ss_pred             CCeEEE-Eec-CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCC---Ccccc
Q 012294          227 DKHLFV-SFE-SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDI---SKVTG  300 (466)
Q Consensus       227 ~~~IYa-Gg~-~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~---~~~~~  300 (466)
                      ++...| +-+ .|.. ...+-++|.+|-+.+..          .-.......+.|+.-+ .++|..-.....   .++..
T Consensus       134 dg~~la~~~s~~G~e-~~~l~v~Dl~tg~~l~d----------~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSE-WYTLRVFDLETGKFLPD----------GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             TSSEEEEEEEETTSS-EEEEEEEETTTTEEEEE----------EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             CCCEEEEEecCCCCc-eEEEEEEECCCCcCcCC----------cccccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            344434 433 2443 67899999999222211          1011112227787643 344444332211   12344


Q ss_pred             eEEEEeCCCC----eeeeEEcCCcccccceeeecCCCceEEEEE--ee-CceeEeeccccC-CCCCeEEeccCCcccccc
Q 012294          301 NIKFWDIRSG----NVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NS-GEVSYMDLRKLG-DSSEWICLGDGRKMVNGK  372 (466)
Q Consensus       301 sVe~yDprt~----~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~-g~l~~~dlr~~~-~~~~W~~~~~~~~~m~~~  372 (466)
                      .|.+|..-++    .+|++-.++.-.+.++..+.++..|+.-..  .+ -++|++|+.... ....|.++.++.      
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------  276 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------  276 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence            6888886555    578877655323567888999998884343  33 468999998851 146788887622      


Q ss_pred             ccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeec
Q 012294          373 RKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKG  452 (466)
Q Consensus       373 ~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~  452 (466)
                        .+...-+..+++.+|+..+++-+=+.=+...-..      ....-.+.-++   +....-.|.+++.-+++|++.-.+
T Consensus       277 --~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~------~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~  345 (414)
T PF02897_consen  277 --DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD------PSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYRE  345 (414)
T ss_dssp             --SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTS------TSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred             --CceEEEEEccCCEEEEeeCCCCCCcEEEEecccc------cccccceeEEc---CCCCceeEEEEEEECCEEEEEEEE
Confidence              2255556667999998877443221111110011      01001111222   223455899999999999987654


Q ss_pred             c
Q 012294          453 Q  453 (466)
Q Consensus       453 ~  453 (466)
                      .
T Consensus       346 ~  346 (414)
T PF02897_consen  346 N  346 (414)
T ss_dssp             T
T ss_pred             C
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=81.01  E-value=54  Score=31.47  Aligned_cols=171  Identities=16%  Similarity=0.131  Sum_probs=83.7

Q ss_pred             cCCcEEEEcCCceeeEe-----cCC-CCC-----CCccccceeeeeecccCCcEEEEecccCCCceec--cceeeeeCCC
Q 012294          141 NYGTLHVSHGSKITSFD-----WSM-RKK-----STILTHFTAVDSLLALSPGVAAAGATDFSGLQVL--DLENGYVKET  207 (466)
Q Consensus       141 ~~g~lyva~GG~ve~YD-----W~~-a~m-----~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l--~svE~ydp~t  207 (466)
                      .++.+|++..+....+|     +.. ...     ...+.+-.++.    -+|.+|+---. .......  ..+-++++. 
T Consensus        50 ~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd----~~G~ly~t~~~-~~~~~~~~~g~v~~~~~~-  123 (246)
T PF08450_consen   50 PDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD----PDGNLYVTDSG-GGGASGIDPGSVYRIDPD-  123 (246)
T ss_dssp             TTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-----TTS-EEEEEEC-CBCTTCGGSEEEEEEETT-
T ss_pred             cCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEc----CCCCEEEEecC-CCccccccccceEEECCC-
Confidence            47888888776666666     222 222     12222222332    56778876431 1111111  345677888 


Q ss_pred             CceeecCC-CCCceeEEEEECC--eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-----cceeeE
Q 012294          208 LNWENVTR-SSSTVQAIGSSDK--HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-----ATKLRW  279 (466)
Q Consensus       208 ~~W~~va~-Mr~~~~Ava~l~~--~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-----~~k~~~  279 (466)
                      .+.+.+.. +...-+ ++...+  .||+.-    ...+.|.+||+..-.  .++..++.|     ...+     |..+..
T Consensus       124 ~~~~~~~~~~~~pNG-i~~s~dg~~lyv~d----s~~~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  124 GKVTVVADGLGFPNG-IAFSPDGKTLYVAD----SFNGRIWRFDLDADG--GELSNRRVF-----IDFPGGPGYPDGLAV  191 (246)
T ss_dssp             SEEEEEEEEESSEEE-EEEETTSSEEEEEE----TTTTEEEEEEEETTT--CCEEEEEEE-----EE-SSSSCEEEEEEE
T ss_pred             CeEEEEecCcccccc-eEECCcchheeecc----cccceeEEEeccccc--cceeeeeeE-----EEcCCCCcCCCcceE
Confidence            55444432 333334 666643  588721    125679999997511  111122222     1111     122222


Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceee-ecCCCceEE
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTV-SDNLSAIYK  337 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v-~~~~~~i~~  337 (466)
                       -.+|.||++.-      ..+.|.+|||+ ++++=+..-|...-..+++ .++...||.
T Consensus       192 -D~~G~l~va~~------~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  192 -DSDGNLWVADW------GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             -BTTS-EEEEEE------TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             -cCCCCEEEEEc------CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence             35889999855      13479999999 7766544434333344444 245555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=80.57  E-value=4.4  Score=41.74  Aligned_cols=147  Identities=20%  Similarity=0.297  Sum_probs=93.1

Q ss_pred             CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEE
Q 012294          227 DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW  305 (466)
Q Consensus       227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~y  305 (466)
                      +-+.+| |++     -+++..|.-..-.|...++-+.         ...+.++|.+-+|.||+-.     . -...|++|
T Consensus       219 ~~~~~a~gsY-----~q~~giy~~~~~~pl~llggh~---------gGvThL~~~edGn~lfsGa-----R-k~dkIl~W  278 (406)
T KOG2919|consen  219 DSKTLAVGSY-----GQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQWCEDGNKLFSGA-----R-KDDKILCW  278 (406)
T ss_pred             CCcceeeecc-----cceeeeEecCCCCceeeecccC---------CCeeeEEeccCcCeecccc-----c-CCCeEEEE
Confidence            345777 776     3456777766655665555433         2467899999999988633     3 24489999


Q ss_pred             eCCCC-eeeeEEcCCc---ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcc-cccc--ccccce
Q 012294          306 DIRSG-NVAWEVKDEV---DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKM-VNGK--RKEGFG  378 (466)
Q Consensus       306 Dprt~-~~vW~~~~~~---d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~-m~~~--~~~~~~  378 (466)
                      |.|.- .+||+.-.+.   ..|.-++.++.+..| +-|..+|-+-|=||..++.   ||-+-....- .|+-  .|- .-
T Consensus       279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L-asG~tdG~V~vwdlk~~gn---~~sv~~~~sd~vNgvslnP~-mp  353 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL-ASGDTDGSVRVWDLKDLGN---EVSVTGNYSDTVNGVSLNPI-MP  353 (406)
T ss_pred             eehhccchhhhhhhhccCccceEEEecCCCCcee-eccCCCccEEEEecCCCCC---cccccccccccccceecCcc-cc
Confidence            98865 8899998773   356667788877763 2344999999999999772   3333221110 1100  011 33


Q ss_pred             eEEEEECCEEEEE-eCCeEEE
Q 012294          379 CKIECHANQVFCG-KGGEIEL  398 (466)
Q Consensus       379 ~~~~~~~~~lf~~-~~~~~~v  398 (466)
                      ....++|.++|.- +.|++|.
T Consensus       354 ilatssGqr~f~~~~dD~ge~  374 (406)
T KOG2919|consen  354 ILATSSGQRIFKYPKDDNGEL  374 (406)
T ss_pred             eeeeccCceeecCCCcccccc
Confidence            4567888888876 3344443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=80.25  E-value=23  Score=36.83  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC
Q 012294          229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR  308 (466)
Q Consensus       229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr  308 (466)
                      .+|+|.+.- +....|.+|+..|-+  .++....    -......|+-+.|.+-...||++..-+...+.  ..-.+|++
T Consensus         4 ~~YiGtyT~-~~s~gI~v~~ld~~~--g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggv--aay~iD~~   74 (346)
T COG2706           4 TVYIGTYTK-RESQGIYVFNLDTKT--GELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGV--AAYRIDPD   74 (346)
T ss_pred             EEEEeeecc-cCCCceEEEEEeCcc--cccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcE--EEEEEcCC
Confidence            578865532 226789999988511  1111100    01111225556666677899999885332211  34556777


Q ss_pred             CCeeeeEEcCC----cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          309 SGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       309 t~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +|+  -+....    +.+-+.++++++++.+|..-=+.|.+-+.-++.-+
T Consensus        75 ~G~--Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG  122 (346)
T COG2706          75 DGR--LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG  122 (346)
T ss_pred             CCe--EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC
Confidence            787  555544    55557889999999999777789998888887754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=80.18  E-value=70  Score=36.16  Aligned_cols=106  Identities=20%  Similarity=0.267  Sum_probs=64.7

Q ss_pred             CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          217 SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       217 r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      ..+++++...+.-.-+ |..     ..++-+|-+..+... -.+|+.    ..|+.        +.+....|+.|+-   
T Consensus       101 ~snVC~ls~~~~~~~iSgSW-----D~TakvW~~~~l~~~-l~gH~a----sVWAv--------~~l~e~~~vTgsa---  159 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGTLISGSW-----DSTAKVWRIGELVYS-LQGHTA----SVWAV--------ASLPENTYVTGSA---  159 (745)
T ss_pred             ccceeeeecCCcCceEeccc-----ccceEEecchhhhcc-cCCcch----heeee--------eecCCCcEEeccC---
Confidence            4555544433444434 433     345566655542211 225544    44542        1233348998883   


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                         ..+|.+|.-  ++++-++++|.||.=.+++-+++..  .=|+++|-+-.-||
T Consensus       160 ---DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f--lScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  160 ---DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF--LSCSNDGSIRLWDL  207 (745)
T ss_pred             ---cceeeeccC--CchhhhhccchhheeeeEEecCCCe--EeecCCceEEEEec
Confidence               448999986  7777999999999888877776554  35888888766666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
3drx_A	202	X-Ray Crystal Structure Of Human Kctd5 Protein Crys		2e-07
3drz_A	107	X-Ray Crystal Structure Of The N-Terminal Btb Domai		2e-07

>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  
Sbjct: 11  SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 69
Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 70  VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 103

>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L           D T  + IDRDP  F  
Sbjct: 5   SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 63
Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 64  VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	5e-23
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	6e-21
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	1e-19
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	5e-19
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	2e-17
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	5e-17
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	3e-16
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	4e-07

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 92.4 bits (230), Expect = 5e-23
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 13/95 (13%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-----------FIDRDPELFSI 70
           S  V ++VGG  F TT+QTL    PKS L +L  +               IDRDP  F  
Sbjct: 5   SKWVRLNVGGTYFLTTRQTLCRD-PKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 63

Query: 71  LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 64  VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 97

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score = 89.6 bits (222), Expect = 6e-21
 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 13  SKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-----------FI 61
           + ++     S  V ++VGG  F TT+QTL    PKS L +L  +               I
Sbjct: 2   ALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRD-PKSFLYRLCQADPDLDSDKDETGAYLI 60

Query: 62  DRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
           DRDP  F  +L+ LR G L    K    E ++EE++FYNI SL+
Sbjct: 61  DRDPTYFGPVLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 103

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 1   MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR- 59
           MP     MP + +    +     ++ ++V G+ FQT + TL    P +LL          
Sbjct: 15  MPVANCPMPLAPADKNKRQ--DELIVLNVSGRRFQTWRTTLE-RYPDTLLGSTEKEFFFN 71

Query: 60  ------FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
                 F DRDPE+F  +L+  RTG L    +   I    +E  FY I   +I  
Sbjct: 72  EDTKEYFFDRDPEVFRCVLNFYRTGKL-HYPRYECISAYDDELAFYGILPEIIGD 125

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124

 Score = 81.7 bits (202), Expect = 5e-19
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 8   MPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-------F 60
           + P+    +       ++ ++V G+ FQT + TL    P +LL                F
Sbjct: 2   LAPADKNKRQ----DELIVLNVSGRRFQTWRTTLE-RYPDTLLGSTEKEFFFNEDTKEYF 56

Query: 61  IDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
            DRDPE+F  +L+  RTG L    +   I    +E  FY I   +I  
Sbjct: 57  FDRDPEVFRCVLNFYRTGKL-HYPRYECISAYDDELAFYGILPEIIGD 103

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 24  IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-------FIDRDPELFSILLSLLR 76
           ++ ++V G  FQT + TL    P +LL                F DRDP++F  +L+  R
Sbjct: 1   LIVLNVSGTRFQTWQDTLERY-PDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYR 59

Query: 77  TGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
           TG L        I    EE  F+ +   +I  
Sbjct: 60  TGKLHYPRH-ECISAYDEELAFFGLIPEIIGD 90

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115

 Score = 75.9 bits (187), Expect = 5e-17
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 22  SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR--------FIDRDPELFSILLS 73
            N V I+VGG   +T K TL    P + LS+L +            F DR P +F+ +++
Sbjct: 4   ENRVIINVGGIRHETYKATLKKI-PATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIIN 62

Query: 74  LLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
             R+G L             EE +F+ ++S  +  
Sbjct: 63  YYRSGKLH-YPTDVCGPLFEEELEFWGLDSNQVEP 96

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 24  IVTIDVGGQIFQTTKQTLALAGPKSLLSKLA--------DSTHRFIDRDPELFSILLSLL 75
            V I+V G  F+T  +TL    P +LL                 F DR+   F  +L   
Sbjct: 2   RVVINVSGLRFETQLKTLNQF-PDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60

Query: 76  RTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
           ++G    +     ++   EE KFY +       
Sbjct: 61  QSGGRLRRPVNVPLDVFSEEIKFYELGENAFER 93

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 9   PPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR--------F 60
           P      ++    S  V I++ G  F+T  +TLA   P++LL                 F
Sbjct: 38  PQDTYDPEADHESSERVVINISGLRFETQLKTLAQF-PETLLGDPKKRMRYFDPLRNEYF 96

Query: 61  IDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
            DR+   F  +L   ++G    +     ++   EE +FY +    +  
Sbjct: 97  FDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEM 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.94
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.93
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.93
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.92
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.91
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.9
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	99.87
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	99.86
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	99.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.86
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	99.86
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	99.84
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	99.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.82
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	99.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.81
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.81
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.76
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.66
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.07
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.07
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.06
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.04
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.02
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.01
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.0
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.98
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	98.98
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	98.98
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.97
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.96
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.93
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.93
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	98.88
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.85
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.82
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.81
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.77
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.57
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.55
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	98.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.53
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.51
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.46
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.41
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.4
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.37
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.33
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.3
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.3
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.27
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.26
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.25
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.23
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.22
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.19
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.19
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.18
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.17
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.16
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.16
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.15
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.11
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.1
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.09
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.07
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.07
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.07
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.99
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.85
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.84
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.84
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.79
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.77
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.75
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.71
2pm7_B	297	Protein transport protein SEC13, protein transport	97.71
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.69
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.69
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.68
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.68
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.65
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.63
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.63
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.61
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.6
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.6
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.59
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.59
3jro_A	753	Fusion protein of protein transport protein SEC13	97.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.57
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.56
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.56
3jro_A	753	Fusion protein of protein transport protein SEC13	97.55
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.55
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.49
2pm7_B	297	Protein transport protein SEC13, protein transport	97.47
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	97.46
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.45
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.45
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.42
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.4
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.39
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.38
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.37
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.37
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.36
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.35
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.34
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.31
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.3
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.22
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.21
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.2
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.14
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.13
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.12
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.11
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.06
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.06
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.03
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.03
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.0
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.87
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.84
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.78
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	96.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.67
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.67
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.65
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	96.62
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.61
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.57
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.57
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.5
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.49
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.43
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.37
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.35
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.34
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.25
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.22
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.21
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.15
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.06
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.03
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	96.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.77
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.43
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.38
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.36
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.35
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.94
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.69
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	94.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.17
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	94.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	93.99
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	93.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	93.71
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	93.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	93.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	92.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	92.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.34
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	92.24
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	92.21
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	92.14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.13
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	91.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	91.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	91.67
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	91.44
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	91.14
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	90.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	90.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	90.24
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	90.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	89.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	88.89
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	88.58
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	88.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	87.73
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	86.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	86.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	85.99
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	85.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	85.61
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	85.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	85.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	85.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	84.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	84.95
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	84.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	84.1
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	83.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	83.82
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	83.31
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	82.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	82.19
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	81.5
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	81.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.0
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	80.05

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.94  E-value=7.2e-26  Score=221.90  Aligned_cols=226  Identities=19%  Similarity=0.265  Sum_probs=178.3

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCCc--------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEec
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK--------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGA  188 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~--------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG  188 (466)
                      +.+|+ .+|..++  ++..++.||+. ||.        +++||     |.. ++|+.+|..+++++    ++++||++||
T Consensus        45 ~~~~p-~~r~~~~--~~~~~~~lyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG  116 (302)
T 2xn4_A           45 VAELP-SRRCRAG--MVYMAGLVFAV-GGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV----LNGLLYAVGG  116 (302)
T ss_dssp             ECCCS-SCCBSCE--EEEETTEEEEE-SCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE----ETTEEEEEEE
T ss_pred             cccCC-cccccce--EEEECCEEEEE-eCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE----ECCEEEEEcC
Confidence            34566 7788777  67889999955 542        57899     999 99999999998887    8999999999


Q ss_pred             ccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCc--CCCeeEEEecCCCCccccccccc
Q 012294          189 TDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRR--NSNSIMVYDINSLKPVNEIGQNE  262 (466)
Q Consensus       189 ~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~--~l~sVE~YDp~t~~~~~~~~~~~  262 (466)
                        .++...++.++.||+.+++|+.+++|   |..++ +++++++||+ ||.++..  .++.+++||+.+           
T Consensus       117 --~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-----------  182 (302)
T 2xn4_A          117 --FDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG-VGVVGGLLYAVGGYDVASRQCLSTVECYNATT-----------  182 (302)
T ss_dssp             --ECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCEETTTTEECCCEEEEETTT-----------
T ss_pred             --CCCCccCceEEEEeCCCCeEeecCCCCCcccCce-EEEECCEEEEEeCCCCCCCccccEEEEEeCCC-----------
Confidence              77777889999999999999999998   66665 7889999999 8765432  378999999999           


Q ss_pred             cccCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceE
Q 012294          263 IYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       263 ~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~  336 (466)
                          +.|+.+++|..     ..+..++.||++||+++.. ..+.+++||+++++  |+...+ ..++...++...++.||
T Consensus       183 ----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~i~  255 (302)
T 2xn4_A          183 ----NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL-VRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAVNGLLY  255 (302)
T ss_dssp             ----TEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS-BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEE
T ss_pred             ----CcEEECCCCccccccccEEEECCEEEEECCCCCCc-ccceEEEEeCCCCC--EeeCCCCCCccccCeEEEECCEEE
Confidence                66777765532     3446899999999998764 56789999999999  998766 44556667777789999


Q ss_pred             EEEEeeCc-----eeEeeccccCCCCCeEEec-cCCccccccccccceeEEEEECCEE
Q 012294          337 KVGINSGE-----VSYMDLRKLGDSSEWICLG-DGRKMVNGKRKEGFGCKIECHANQV  388 (466)
Q Consensus       337 ~v~~~~g~-----l~~~dlr~~~~~~~W~~~~-~~~~~m~~~~~~~~~~~~~~~~~~l  388 (466)
                      .+|+.++.     +++-|+.    .+.|..+. +    |..  +| +++.+++++++|
T Consensus       256 v~GG~~~~~~~~~v~~yd~~----~~~W~~~~~~----~~~--~r-~~~~~~~~~~~i  302 (302)
T 2xn4_A          256 VVGGDDGSCNLASVEYYNPT----TDKWTVVSSC----MST--GR-SYAGVTVIDKRL  302 (302)
T ss_dssp             EECCBCSSSBCCCEEEEETT----TTEEEECSSC----CSS--CC-BSCEEEEEEC--
T ss_pred             EECCcCCCcccccEEEEcCC----CCeEEECCcc----cCc--cc-ccceEEEecccC
Confidence            99997764     3444433    57899987 4    553  66 788888888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.94  E-value=3.8e-25  Score=216.74  Aligned_cols=219  Identities=18%  Similarity=0.223  Sum_probs=174.7

Q ss_pred             eecCCcEEEEcCCc-------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294          139 TTNYGTLHVSHGSK-------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK  205 (466)
Q Consensus       139 a~~~g~lyva~GG~-------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp  205 (466)
                      ..+++.||+. ||.       +++||     |.. ++|+.+|..+++++    ++++||++||  .++...++.+++|||
T Consensus        12 ~~~~~~i~v~-GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv~GG--~~~~~~~~~~~~~d~   84 (302)
T 2xn4_A           12 MNLPKLMVVV-GGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY----MAGLVFAVGG--FNGSLRVRTVDSYDP   84 (302)
T ss_dssp             ---CEEEEEE-CCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE----ETTEEEEESC--BCSSSBCCCEEEEET
T ss_pred             cCCCCEEEEE-CCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE----ECCEEEEEeC--cCCCccccceEEECC
Confidence            3457889955 552       57898     999 99999999988776    8999999999  777677899999999


Q ss_pred             CCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee----
Q 012294          206 ETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL----  277 (466)
Q Consensus       206 ~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~----  277 (466)
                      .+++|+.+++|   |..++ +++++++||+ ||.++...++++|+||+.+               +.|+.+++|..    
T Consensus        85 ~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~---------------~~W~~~~~~p~~r~~  148 (302)
T 2xn4_A           85 VKDQWTSVANMRDRRSTLG-AAVLNGLLYAVGGFDGSTGLSSVEAYNIKS---------------NEWFHVAPMNTRRSS  148 (302)
T ss_dssp             TTTEEEEECCCSSCCBSCE-EEEETTEEEEEEEECSSCEEEEEEEEETTT---------------TEEEEECCCSSCCBS
T ss_pred             CCCceeeCCCCCccccceE-EEEECCEEEEEcCCCCCccCceEEEEeCCC---------------CeEeecCCCCCcccC
Confidence            99999999999   66665 7889999999 8876665689999999999               66777776533    


Q ss_pred             -eEEeeCCeEEEEeecCCCC-cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc-----eeEee
Q 012294          278 -RWVSSYNLLLASGSHSDIS-KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE-----VSYMD  349 (466)
Q Consensus       278 -~~~~~~~~Lyv~Gg~~g~~-~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~-----l~~~d  349 (466)
                       ..+..++.||++||.++.. ...+.+++||+.+++  |+...+ -..+...++...++.||.+|+.++.     ++..|
T Consensus       149 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd  226 (302)
T 2xn4_A          149 VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD  226 (302)
T ss_dssp             CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE
T ss_pred             ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEe
Confidence             2345899999999988764 246689999999999  998765 4456666777788999999997654     44444


Q ss_pred             ccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          350 LRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       350 lr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      +.    ++.|..+.+    |..  +| .++.++.++++||+.-|
T Consensus       227 ~~----~~~W~~~~~----~~~--~r-~~~~~~~~~~~i~v~GG  259 (302)
T 2xn4_A          227 PT----TNAWRQVAD----MNM--CR-RNAGVCAVNGLLYVVGG  259 (302)
T ss_dssp             TT----TTEEEEECC----CSS--CC-BSCEEEEETTEEEEECC
T ss_pred             CC----CCCEeeCCC----CCC--cc-ccCeEEEECCEEEEECC
Confidence            42    578999987    663  56 77889999999999966

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=222.55  Aligned_cols=227  Identities=14%  Similarity=0.171  Sum_probs=179.5

Q ss_pred             CCCCCCCceeeecCCcEEEEcCCc--------------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEec
Q 012294          129 NGRDSPSAIATTNYGTLHVSHGSK--------------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGA  188 (466)
Q Consensus       129 ~~R~~~~a~~a~~~g~lyva~GG~--------------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG  188 (466)
                      .+|..++  ++..++.||+.+| .              +++||     |.. ++|+.+|..+++++    ++++||++||
T Consensus        34 ~~r~~~~--~~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv~GG  106 (315)
T 4asc_A           34 VPKNHVS--LVTKENQVFVAGG-LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE----ALNSIYVVGG  106 (315)
T ss_dssp             SCSSEEE--EECTTCCEEEEEE-EEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE----ETTEEEEECC
T ss_pred             CCccceE--EEEECCEEEEEcC-cccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE----ECCEEEEEeC
Confidence            5687777  7788999996644 2              46788     998 99999999998887    8999999999


Q ss_pred             ccC-CCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-Eec-CCCcCCCeeEEEecCCCCccccccccc
Q 012294          189 TDF-SGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFE-SGRRNSNSIMVYDINSLKPVNEIGQNE  262 (466)
Q Consensus       189 ~~~-~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~-~g~~~l~sVE~YDp~t~~~~~~~~~~~  262 (466)
                      ... ++...++.+++|||.+++|+.+++|   |..++ +++++++||+ ||. ++...++.+++|||.+           
T Consensus       107 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~-----------  174 (315)
T 4asc_A          107 REIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT-VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK-----------  174 (315)
T ss_dssp             EESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCTTSCBCCCEEEEETTT-----------
T ss_pred             CcCCCCCcccceEEEECCCCCcEeECCCCCCccccee-EEEECCEEEEEeCCCCCCcccceEEEEeCCC-----------
Confidence            432 3466789999999999999999998   66665 7889999999 876 4555589999999999           


Q ss_pred             cccCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceE
Q 012294          263 IYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       263 ~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~  336 (466)
                          +.|+.+++|..     .....++.||++||+++.. ..+.+++|||.+++  |+..++ -.+|...++...++.||
T Consensus       175 ----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~  247 (315)
T 4asc_A          175 ----FEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNK--WAPFEAFPQERSSLSLVSLVGTLY  247 (315)
T ss_dssp             ----TEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-EEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEE
T ss_pred             ----CeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-ccceEEEEECCCCe--EEECCCCCCcccceeEEEECCEEE
Confidence                66777776533     2445899999999998764 56789999999999  999876 44566667777788999


Q ss_pred             EEEEeeC------c--------eeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294          337 KVGINSG------E--------VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       337 ~v~~~~g------~--------l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                      .+|+.++      +        ++.-|+.    ++.|..+.+        .+| .++.+++++++||+.+..
T Consensus       248 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~----~~~W~~~~~--------~~r-~~~~~~~~~~~l~v~~~~  306 (315)
T 4asc_A          248 AIGGFATLETESGELVPTELNDIWRYNEE----EKKWEGVLR--------EIA-YAAGATFLPVRLNVLRLT  306 (315)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEETT----TTEEEEEES--------CSS-CCSSCEEEEEEECGGGSE
T ss_pred             EECCccccCcCCccccccccCcEEEecCC----CChhhhhcc--------CCc-CccceEEeCCEEEEEEeh
Confidence            9999753      2        3333332    578998843        355 677789999999988763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.94  E-value=4.5e-25  Score=217.76  Aligned_cols=226  Identities=15%  Similarity=0.200  Sum_probs=177.0

Q ss_pred             CCCCCCCceeeecCCcEEEEcCC-------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccC----
Q 012294          129 NGRDSPSAIATTNYGTLHVSHGS-------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDF----  191 (466)
Q Consensus       129 ~~R~~~~a~~a~~~g~lyva~GG-------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~----  191 (466)
                      .+|..+.  .+..++.||+. ||       .+.+||     |.. ++|+.+|..+++++    ++++||++||  .    
T Consensus        13 ~~~~~~~--~~~~~~~i~v~-GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv~GG--~~~~~   83 (308)
T 1zgk_A           13 LVPRGSH--APKVGRLIYTA-GGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV----VGGLLYAVGG--RNNSP   83 (308)
T ss_dssp             ----------CCCCCCEEEE-CCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE----ETTEEEEECC--EEEET
T ss_pred             eeeCCcc--ccCCCCEEEEE-eCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE----ECCEEEEECC--CcCCC
Confidence            3455555  56778999955 55       357898     998 99999999988776    8999999999  5    


Q ss_pred             CCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCC
Q 012294          192 SGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTD  267 (466)
Q Consensus       192 ~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~  267 (466)
                      ++...++.+++|||.+++|+.+++|   |..++ +++++++||+ ||.++...++.+++||+.+               +
T Consensus        84 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~---------------~  147 (308)
T 1zgk_A           84 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPER---------------D  147 (308)
T ss_dssp             TEEEECCCEEEEETTTTEEEECCCCSSCCBTCE-EEEETTEEEEECCEETTEECCCEEEEETTT---------------T
T ss_pred             CCCeecceEEEECCCCCeEeECCCCCcCccccE-EEEECCEEEEEcCCCCCcccccEEEECCCC---------------C
Confidence            5666789999999999999999998   66666 7889999999 8876655689999999999               6


Q ss_pred             ceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEe
Q 012294          268 IESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGIN  341 (466)
Q Consensus       268 ~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~  341 (466)
                      .|+.++++..     .....++.||++||.++.. .++.+++||+.+++  |+...+ ..++...++...++.||.+|+.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  224 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYAAGGY  224 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             eEeECCCCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEEEEeCC
Confidence            6777765532     2345799999999998765 46789999999999  998866 4456666777778999999997


Q ss_pred             eC-----ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          342 SG-----EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       342 ~g-----~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      ++     +++..|+.    ++.|..+.+    |..  +| .++.+++++++||+.-|
T Consensus       225 ~~~~~~~~v~~yd~~----~~~W~~~~~----~p~--~r-~~~~~~~~~~~i~v~GG  270 (308)
T 1zgk_A          225 DGQDQLNSVERYDVE----TETWTFVAP----MKH--RR-SALGITVHQGRIYVLGG  270 (308)
T ss_dssp             CSSSBCCCEEEEETT----TTEEEECCC----CSS--CC-BSCEEEEETTEEEEECC
T ss_pred             CCCCccceEEEEeCC----CCcEEECCC----CCC--Cc-cceEEEEECCEEEEEcC
Confidence            64     45555553    578999987    663  66 78889999999999965

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.93  E-value=9.8e-25  Score=215.34  Aligned_cols=221  Identities=17%  Similarity=0.197  Sum_probs=174.1

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCCc------------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEE
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK------------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVA  184 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~------------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lY  184 (466)
                      +.+|+ .+|..++  ++..++.||+. ||.            +++||     |.. ++|+.+|..+++++    ++++||
T Consensus        54 ~~~~p-~~r~~~~--~~~~~~~lyv~-GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iy  125 (308)
T 1zgk_A           54 LADLQ-VPRSGLA--GCVVGGLLYAV-GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV----IDGHIY  125 (308)
T ss_dssp             CCCCS-SCCBSCE--EEEETTEEEEE-CCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE----ETTEEE
T ss_pred             CCCCC-cccccce--EEEECCEEEEE-CCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE----ECCEEE
Confidence            34566 7788877  77889999955 554            46788     999 99999999998887    899999


Q ss_pred             EEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccc
Q 012294          185 AAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQ  260 (466)
Q Consensus       185 aiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~  260 (466)
                      ++||  .++...++.+++||+.+++|+.+++|   |..++ +++++++||+ ||.++...++.+++||+.+         
T Consensus       126 v~GG--~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~---------  193 (308)
T 1zgk_A          126 AVGG--SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPER---------  193 (308)
T ss_dssp             EECC--EETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTT---------
T ss_pred             EEcC--CCCCcccccEEEECCCCCeEeECCCCCccccceE-EEEECCEEEEEeCCCCCCcCceEEEEeCCC---------
Confidence            9999  76777889999999999999999998   66665 7888999999 8876665689999999999         


Q ss_pred             cccccCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCc
Q 012294          261 NEIYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSA  334 (466)
Q Consensus       261 ~~~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~  334 (466)
                            +.|+.+++|..     ..+..++.||++||.++.. ....+++||+.+++  |+...+ ..++...++...++.
T Consensus       194 ------~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~  264 (308)
T 1zgk_A          194 ------NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETET--WTFVAPMKHRRSALGITVHQGR  264 (308)
T ss_dssp             ------TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTE
T ss_pred             ------CeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC-ccceEEEEeCCCCc--EEECCCCCCCccceEEEEECCE
Confidence                  66777765532     2445799999999998754 56789999999999  998866 344566667777899


Q ss_pred             eEEEEEeeCc-----eeEeeccccCCCCCeEEeccCCccccccccccceeEEEE
Q 012294          335 IYKVGINSGE-----VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC  383 (466)
Q Consensus       335 i~~v~~~~g~-----l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~  383 (466)
                      ||.+|+.++.     ++..|+.    ++.|..+.+    |..  +| +++.+++
T Consensus       265 i~v~GG~~~~~~~~~v~~yd~~----~~~W~~~~~----~p~--~r-~~~~~~~  307 (308)
T 1zgk_A          265 IYVLGGYDGHTFLDSVECYDPD----TDTWSEVTR----MTS--GR-SGVGVAV  307 (308)
T ss_dssp             EEEECCBCSSCBCCEEEEEETT----TTEEEEEEE----CSS--CC-BSCEEEE
T ss_pred             EEEEcCcCCCcccceEEEEcCC----CCEEeecCC----CCC--Cc-ccceeEe
Confidence            9999997654     3333332    588999977    663  55 5555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.93  E-value=6.9e-25  Score=215.32  Aligned_cols=222  Identities=15%  Similarity=0.195  Sum_probs=174.5

Q ss_pred             cccccCCCCCCCCCceeeecCCcEEEEcCCc-------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEec
Q 012294          122 KSLILPLNGRDSPSAIATTNYGTLHVSHGSK-------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGA  188 (466)
Q Consensus       122 ~va~l~~~~R~~~~a~~a~~~g~lyva~GG~-------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG  188 (466)
                      .+++|+ .+|..++  ++.+++.||+. ||.       +++||     |.. ++|+.+|..+++++    ++++||++||
T Consensus        38 ~~~~~p-~~r~~~~--~~~~~~~lyv~-GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG  109 (306)
T 3ii7_A           38 DIRCPF-EKRRDAA--CVFWDNVVYIL-GGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA----AEGKIYTSGG  109 (306)
T ss_dssp             ECCCCS-CCCBSCE--EEEETTEEEEE-CCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE----ETTEEEEECC
T ss_pred             cCCCCC-cccceeE--EEEECCEEEEE-eCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE----ECCEEEEECC
Confidence            345677 7888888  77889999955 552       57899     999 99999999998887    8999999999


Q ss_pred             ccCC-CceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcC----CCeeEEEecCCCCcccccc
Q 012294          189 TDFS-GLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRN----SNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       189 ~~~~-g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~----l~sVE~YDp~t~~~~~~~~  259 (466)
                        .+ +...++.+++||+.+++|+.+++|   |..++ +++++++||+ ||.++...    ++.+++|||.+        
T Consensus       110 --~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--------  178 (306)
T 3ii7_A          110 --SEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT--------  178 (306)
T ss_dssp             --BBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCEESCTTTCEECCCEEEEETTT--------
T ss_pred             --CCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeE-EEEECCEEEEECCCCCCCCcccccceEEEeCCCC--------
Confidence              65 666789999999999999999998   66665 7889999999 87655544    89999999999        


Q ss_pred             ccccccCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCC
Q 012294          260 QNEIYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLS  333 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~  333 (466)
                             +.|+.+++|..     ..+..++.||++||.++.. ....+++||+.+++  |+...+ -.++...++...++
T Consensus       179 -------~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~  248 (306)
T 3ii7_A          179 -------ETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-GLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGS  248 (306)
T ss_dssp             -------TEEEEECCCSSCCBSCEEEEETTEEEEECCEETTE-EBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEETT
T ss_pred             -------CeEEECCCccchhhcceEEEECCEEEEEeCCCCCC-CCceEEEeeCCCCc--EEECCCCCCCccceeEEEECC
Confidence                   66777776533     3445799999999988763 56689999999999  999876 44566677777789


Q ss_pred             ceEEEEEeeCc-----eeEeeccccCCCCCeEEeccCCccccccccccceeEEEE
Q 012294          334 AIYKVGINSGE-----VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC  383 (466)
Q Consensus       334 ~i~~v~~~~g~-----l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~  383 (466)
                      .||.+|+.++.     +++-|+.    .+.|..+.+    |..  +| .++.+++
T Consensus       249 ~i~v~GG~~~~~~~~~~~~yd~~----~~~W~~~~~----~~~--~r-~~~~~~~  292 (306)
T 3ii7_A          249 IVYVLAGFQGVGRLGHILEYNTE----TDKWVANSK----VRA--FP-VTSCLIC  292 (306)
T ss_dssp             EEEEEECBCSSSBCCEEEEEETT----TTEEEEEEE----EEC--CS-CTTCEEE
T ss_pred             EEEEEeCcCCCeeeeeEEEEcCC----CCeEEeCCC----ccc--cc-ceeEEEE
Confidence            99999996654     3344432    578999987    663  55 4444444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.93  E-value=4.1e-24  Score=209.81  Aligned_cols=216  Identities=15%  Similarity=0.188  Sum_probs=173.4

Q ss_pred             CCcEEEEcCC----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCcee
Q 012294          142 YGTLHVSHGS----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       142 ~g~lyva~GG----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~  211 (466)
                      .+.||+++|.    .+++||     |.. ++|+.+|..+++++    ++++||++||  .+ ...++.++.|||.+++|+
T Consensus        11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv~GG--~~-~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF----WDNVVYILGG--SQ-LFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE----ETTEEEEECC--BS-SSBCCEEEEEETTTTEEE
T ss_pred             cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE----ECCEEEEEeC--CC-CCCcceEEEEeCCCCeEE
Confidence            3688865543    367899     999 99999999998887    9999999999  65 567899999999999999


Q ss_pred             ecCCC---CCceeEEEEECCeEEE-EecC-CCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-----eEEe
Q 012294          212 NVTRS---SSTVQAIGSSDKHLFV-SFES-GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-----RWVS  281 (466)
Q Consensus       212 ~va~M---r~~~~Ava~l~~~IYa-Gg~~-g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-----~~~~  281 (466)
                      .+++|   |..++ +++++++||+ ||.+ +...++.+++||+.+               +.|+.+++|..     ..+.
T Consensus        84 ~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~---------------~~W~~~~~~p~~r~~~~~~~  147 (306)
T 3ii7_A           84 SKLGPPTPRDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRT---------------ESWHTKPSMLTQRCSHGMVE  147 (306)
T ss_dssp             EEECCSSCCBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTT---------------TEEEEECCCSSCCBSCEEEE
T ss_pred             ECCCCCcccccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCC---------------CceEeCCCCcCCcceeEEEE
Confidence            99998   66665 7889999999 8865 555689999999999               66777776532     2345


Q ss_pred             eCCeEEEEeecCCCCc---ccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc-----eeEeeccc
Q 012294          282 SYNLLLASGSHSDISK---VTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE-----VSYMDLRK  352 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~---~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~-----l~~~dlr~  352 (466)
                      .++.||++||.++...   ..+.+++||+.+++  |+...+ ...+...++...++.||.+|+.++.     +++.|+. 
T Consensus       148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~-  224 (306)
T 3ii7_A          148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK-  224 (306)
T ss_dssp             ETTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT-
T ss_pred             ECCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC-
Confidence            8999999999887653   16789999999999  999876 4456677777778899999998765     3333332 


Q ss_pred             cCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       353 ~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                         .+.|..+.+    |..  +| .++.+++++++||+.-|
T Consensus       225 ---~~~W~~~~~----~p~--~r-~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          225 ---LNEWKMVSP----MPW--KG-VTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             ---TTEEEECCC----CSC--CB-SCCEEEEETTEEEEEEC
T ss_pred             ---CCcEEECCC----CCC--Cc-cceeEEEECCEEEEEeC
Confidence               578999987    653  56 78888999999999977

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.93  E-value=4.2e-24  Score=208.89  Aligned_cols=218  Identities=17%  Similarity=0.248  Sum_probs=174.6

Q ss_pred             eecCCcEEEEcCC---------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeee
Q 012294          139 TTNYGTLHVSHGS---------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGY  203 (466)
Q Consensus       139 a~~~g~lyva~GG---------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~y  203 (466)
                      ...++.||+. ||         .+++||     |.. ++|+.+|..++++.    ++++||++||  .++...++.+++|
T Consensus        11 ~~~~~~i~~~-GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~l~v~GG--~~~~~~~~~~~~~   83 (301)
T 2vpj_A           11 LGANEVLLVV-GGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS----LHDRIYVIGG--YDGRSRLSSVECL   83 (301)
T ss_dssp             --CCEEEEEE-CCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE----ETTEEEEECC--BCSSCBCCCEEEE
T ss_pred             ccCCCEEEEE-eCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE----ECCEEEEEcC--CCCCccCceEEEE
Confidence            4467889955 55         247898     999 88999999988877    8999999999  7677778999999


Q ss_pred             eCCCCc---eeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce
Q 012294          204 VKETLN---WENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK  276 (466)
Q Consensus       204 dp~t~~---W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k  276 (466)
                      |+.+++   |+.+++|   |..++ +++++++||+ ||.++...++.+++||+.+               +.|+.++++.
T Consensus        84 d~~~~~~~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~---------------~~W~~~~~~p  147 (301)
T 2vpj_A           84 DYTADEDGVWYSVAPMNVRRGLAG-ATTLGDMIYVSGGFDGSRRHTSMERYDPNI---------------DQWSMLGDMQ  147 (301)
T ss_dssp             ETTCCTTCCCEEECCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTT---------------TEEEEEEECS
T ss_pred             ECCCCCCCeeEECCCCCCCcccee-EEEECCEEEEEcccCCCcccceEEEEcCCC---------------CeEEECCCCC
Confidence            999999   9999998   66665 7889999999 8876665689999999999               5677766543


Q ss_pred             e-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeC-----ce
Q 012294          277 L-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSG-----EV  345 (466)
Q Consensus       277 ~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g-----~l  345 (466)
                      .     .....++.||+.||.++.. .++.+++||+.+++  |+..++ -..+...++...++.||.+|+.++     ++
T Consensus       148 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v  224 (301)
T 2vpj_A          148 TAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSV  224 (301)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred             CCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCc--EEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceE
Confidence            2     2345799999999998764 67789999999999  998765 345566677777899999999764     44


Q ss_pred             eEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          346 SYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       346 ~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      +..|+.    ++.|..+.+    |..  +| .++.+++++++||+.-|
T Consensus       225 ~~yd~~----~~~W~~~~~----~p~--~r-~~~~~~~~~~~i~v~GG  261 (301)
T 2vpj_A          225 EAYNIR----TDSWTTVTS----MTT--PR-CYVGATVLRGRLYAIAG  261 (301)
T ss_dssp             EEEETT----TTEEEEECC----CSS--CC-BSCEEEEETTEEEEECC
T ss_pred             EEEeCC----CCcEEECCC----CCC--cc-cceeEEEECCEEEEEcC
Confidence            555543    578999987    653  56 78888999999999976

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.92  E-value=6e-24  Score=213.04  Aligned_cols=234  Identities=11%  Similarity=0.019  Sum_probs=174.1

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCC----ceeeEe-------cCC-CCCC-CccccceeeeeecccCCcEEEEecc
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGS----KITSFD-------WSM-RKKS-TILTHFTAVDSLLALSPGVAAAGAT  189 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG----~ve~YD-------W~~-a~m~-~~R~~~~~v~sl~~l~~~lYaiGG~  189 (466)
                      +++|| .+|..+.  ++..++.||+. ||    .+.+||       |.. ++|+ .+|..+++++    ++++||++||.
T Consensus         3 l~~lP-~~r~~~~--~~~~~~~iyv~-GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~----~~~~lyv~GG~   74 (357)
T 2uvk_A            3 LPETP-VPFKSGT--GAIDNDTVYIG-LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF----IDGNLYVFGGI   74 (357)
T ss_dssp             SCCCS-SCCCSCE--EEEETTEEEEE-CGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE----ETTEEEEECCE
T ss_pred             CCCCC-ccccceE--EEEECCEEEEE-eCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE----ECCEEEEEcCC
Confidence            56677 7787765  66779999955 55    357887       988 8999 8999998887    99999999993


Q ss_pred             -c--CCCceeccceeeeeCCCCceeecCCC----CCceeEEEEECCeEEE-EecCCC-----------------------
Q 012294          190 -D--FSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSSDKHLFV-SFESGR-----------------------  238 (466)
Q Consensus       190 -~--~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l~~~IYa-Gg~~g~-----------------------  238 (466)
                       .  ..+...++.+++|||.+++|+.+++|    |..++ +++++++||+ ||.++.                       
T Consensus        75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (357)
T 2uvk_A           75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHV-TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN  153 (357)
T ss_dssp             EECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEE-EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccce-EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence             1  12346689999999999999999987    66665 5679999999 886542                       


Q ss_pred             -----------cCCCeeEEEecCCCCccccccccccccCCceeecCcce------eeEEeeCCeEEEEeecCCCCcccce
Q 012294          239 -----------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK------LRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       239 -----------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k------~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                                 ..++.+++|||.+               +.|+.+++|.      ...+..++.||++||.++.......
T Consensus       154 ~~~~~~~~~~~~~~~~v~~yd~~~---------------~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  218 (357)
T 2uvk_A          154 AHYFDKKAEDYFFNKFLLSFDPST---------------QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDA  218 (357)
T ss_dssp             HHHHSSCGGGGCCCCEEEEEETTT---------------TEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCC
T ss_pred             hhhccccccccCCcccEEEEeCCC---------------CcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCc
Confidence                       1368999999999               6677766543      2344589999999998776545667


Q ss_pred             EEEEeC--CCCeeeeEEcCCc---ccccceeeecCCCceEEEEEeeC----------------------ceeEeeccccC
Q 012294          302 IKFWDI--RSGNVAWEVKDEV---DCFSDVTVSDNLSAIYKVGINSG----------------------EVSYMDLRKLG  354 (466)
Q Consensus       302 Ve~yDp--rt~~~vW~~~~~~---d~~~~~~v~~~~~~i~~v~~~~g----------------------~l~~~dlr~~~  354 (466)
                      +++||+  .+++  |+...+.   ..+...++...++.||.+|+.+.                      ++.+-|+.   
T Consensus       219 v~~~d~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~---  293 (357)
T 2uvk_A          219 VFELDFTGNNLK--WNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH---  293 (357)
T ss_dssp             EEEEECC---CE--EEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred             eEEEEecCCCCc--EEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC---
Confidence            999976  8888  9987652   22445557777889999999652                      33444443   


Q ss_pred             CCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          355 DSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                       ++.|..+++    |..  +| .++..+.++++||+.-|
T Consensus       294 -~~~W~~~~~----~p~--~r-~~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          294 -NGKWDKSGE----LSQ--GR-AYGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             ----CEEEEE----CSS--CC-BSSEEEEETTEEEEEEE
T ss_pred             -CCceeeCCC----CCC--Cc-ccceeEEeCCEEEEEee
Confidence             578999987    663  66 67788899999999966

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.92  E-value=3.2e-24  Score=212.27  Aligned_cols=226  Identities=14%  Similarity=0.222  Sum_probs=175.3

Q ss_pred             CCCCCCCceeeecCCcEEEEcCC---------c----eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecc
Q 012294          129 NGRDSPSAIATTNYGTLHVSHGS---------K----ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGAT  189 (466)
Q Consensus       129 ~~R~~~~a~~a~~~g~lyva~GG---------~----ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~  189 (466)
                      .+|..++  ++..++.||+.+|-         .    +++||     |.. ++|+.+|..+++++    ++++||++||.
T Consensus        45 ~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~  118 (318)
T 2woz_A           45 IPRNHSS--IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE----VDDKIYVVAGK  118 (318)
T ss_dssp             SCSSEEE--EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE----ETTEEEEEEEE
T ss_pred             CCccceE--EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE----ECCEEEEEcCc
Confidence            5677766  67789999966551         1    46788     999 99999999998887    89999999994


Q ss_pred             cCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-Eec-CCCcCCCeeEEEecCCCCccccccccccc
Q 012294          190 DFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFE-SGRRNSNSIMVYDINSLKPVNEIGQNEIY  264 (466)
Q Consensus       190 ~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~-~g~~~l~sVE~YDp~t~~~~~~~~~~~~~  264 (466)
                      ...+...++.+++||+.+++|+.+++|   |..++ +++++++||+ ||. .+...++.+++|||.+             
T Consensus       119 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~-------------  184 (318)
T 2woz_A          119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKK-------------  184 (318)
T ss_dssp             BTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTT-------------
T ss_pred             cCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCC-------------
Confidence            333566789999999999999999988   66665 6789999999 775 3344589999999999             


Q ss_pred             cCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEE
Q 012294          265 GTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKV  338 (466)
Q Consensus       265 ~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v  338 (466)
                        +.|+.+++|..     ..+..++.||++||.++.. ..+.+++||+.+++  |+..++ -..+...++...++.||.+
T Consensus       185 --~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~  259 (318)
T 2woz_A          185 --GDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAI  259 (318)
T ss_dssp             --TEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-EEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             --CEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-ccceEEEEECCCCe--EEECCCCCCcccceEEEEECCEEEEE
Confidence              66777775532     3445899999999988753 56789999999999  999876 3355666777778899999


Q ss_pred             EEeeC--------------ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe
Q 012294          339 GINSG--------------EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK  392 (466)
Q Consensus       339 ~~~~g--------------~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~  392 (466)
                      |+.++              +++.-|+.    ++.|..+-      .  .+| .++..+++++++|+.+
T Consensus       260 GG~~~~~~~~~~~~~~~~~~v~~yd~~----~~~W~~~~------~--~~r-~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          260 GGFAMIQLESKEFAPTEVNDIWKYEDD----KKEWAGML------K--EIR-YASGASCLATRLNLFK  314 (318)
T ss_dssp             CCBCCBC----CCBCCBCCCEEEEETT----TTEEEEEE------S--CCG-GGTTCEEEEEEEEGGG
T ss_pred             CCeeccCCCCceeccceeeeEEEEeCC----CCEehhhc------c--ccc-ccccceeeCCEEEEEE
Confidence            98653              34455543    47899882      2  245 6777888999999764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=205.89  Aligned_cols=222  Identities=12%  Similarity=0.148  Sum_probs=174.7

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCCc--------eeeEe--------cCC-CCCCCccccceeeeeecccCCcEEE
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK--------ITSFD--------WSM-RKKSTILTHFTAVDSLLALSPGVAA  185 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~--------ve~YD--------W~~-a~m~~~R~~~~~v~sl~~l~~~lYa  185 (466)
                      +.+|+ .+|..++  ++..++.||+. ||.        +++||        |.. ++|+.+|..+++++    ++++||+
T Consensus        46 ~~~~p-~~r~~~~--~~~~~~~l~v~-GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv  117 (301)
T 2vpj_A           46 LPSIT-RKRRYVA--SVSLHDRIYVI-GGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT----LGDMIYV  117 (301)
T ss_dssp             CCCCS-SCCBSCE--EEEETTEEEEE-CCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE----ETTEEEE
T ss_pred             CCCCC-hhhcccc--EEEECCEEEEE-cCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE----ECCEEEE
Confidence            34566 6788777  77889999955 542        57888        888 99999999998887    8999999


Q ss_pred             EecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccccc
Q 012294          186 AGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQN  261 (466)
Q Consensus       186 iGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~  261 (466)
                      +||  .++...++.++.||+.+++|+.+++|   |..++ +++++++||+ ||.++...++.+++||+.+          
T Consensus       118 ~GG--~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~----------  184 (301)
T 2vpj_A          118 SGG--FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG-LVVASGVIYCLGGYDGLNILNSVEKYDPHT----------  184 (301)
T ss_dssp             ECC--BCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTT----------
T ss_pred             Ecc--cCCCcccceEEEEcCCCCeEEECCCCCCCcccce-EEEECCEEEEECCCCCCcccceEEEEeCCC----------
Confidence            999  77777789999999999999999988   66665 7888999999 8876666689999999999          


Q ss_pred             ccccCCceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCce
Q 012294          262 EIYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAI  335 (466)
Q Consensus       262 ~~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i  335 (466)
                           +.|+.++++..     ..+..++.||++||.++.. ..+.|++||+++++  |+..++ ...+...++...++.|
T Consensus       185 -----~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i  256 (301)
T 2vpj_A          185 -----GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRL  256 (301)
T ss_dssp             -----TEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEE
T ss_pred             -----CcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-ccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEE
Confidence                 66777765532     3446899999999988764 46789999999999  998866 4455666677778899


Q ss_pred             EEEEEeeCc-----eeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE
Q 012294          336 YKVGINSGE-----VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH  384 (466)
Q Consensus       336 ~~v~~~~g~-----l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~  384 (466)
                      |.+|+.++.     ++.-|+.    ++.|..+.+    |..  +| +++..++.
T Consensus       257 ~v~GG~~~~~~~~~v~~yd~~----~~~W~~~~~----~~~--~r-~~~~~~~~  299 (301)
T 2vpj_A          257 YAIAGYDGNSLLSSIECYDPI----IDSWEVVTS----MGT--QR-CDAGVCVL  299 (301)
T ss_dssp             EEECCBCSSSBEEEEEEEETT----TTEEEEEEE----EEE--EE-ESCEEEEE
T ss_pred             EEEcCcCCCcccccEEEEcCC----CCeEEEcCC----CCc--cc-ccceEEEe
Confidence            999997653     4444443    578999987    663  55 55555554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.91  E-value=2e-22  Score=199.11  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=168.1

Q ss_pred             CcEEEEcCCceeeEe-----cCCCCC--CCccccceeeeeecccCCcEEEEecccC--C--CceeccceeeeeCCCCcee
Q 012294          143 GTLHVSHGSKITSFD-----WSMRKK--STILTHFTAVDSLLALSPGVAAAGATDF--S--GLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       143 g~lyva~GG~ve~YD-----W~~a~m--~~~R~~~~~v~sl~~l~~~lYaiGG~~~--~--g~~~l~svE~ydp~t~~W~  211 (466)
                      ..||+.+|..+.+||     |..++|  +.+|..+++++    ++++||++||...  +  .....+.+++|||.+++|+
T Consensus         5 ~~l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            5 DLIFMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVT----KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEEC----TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             eEEEEEcCCceEEECCCCCeEecCCCCCCCCccceEEEE----ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            467756555678999     987444  55788887776    8999999999311  1  1223456999999999999


Q ss_pred             ecCCC---CCceeEEEEECCeEEE-EecC---CCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-----eE
Q 012294          212 NVTRS---SSTVQAIGSSDKHLFV-SFES---GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-----RW  279 (466)
Q Consensus       212 ~va~M---r~~~~Ava~l~~~IYa-Gg~~---g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-----~~  279 (466)
                      .+++|   |..++ +++++++||+ ||.+   +...++.+++||+.+               +.|+.++++..     ..
T Consensus        81 ~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~---------------~~W~~~~~~p~~r~~~~~  144 (315)
T 4asc_A           81 GMPPLPSPRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLS---------------FKWGESDPLPYVVYGHTV  144 (315)
T ss_dssp             ECCCBSSCEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTT---------------TEEEECCCCSSCCBSCEE
T ss_pred             ECCCCCcchhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCC---------------CcEeECCCCCCcccceeE
Confidence            99998   66655 7889999999 8753   344589999999999               56777775532     24


Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC-CC
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-SS  357 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-~~  357 (466)
                      +..++.||+.||.+......+.+++|||.+++  |+...+ -.+|...++...++.||.+|+.++.-...++-...- ++
T Consensus       145 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          145 LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            45899999999985444567799999999999  999876 445666777778889999999876522222222211 57


Q ss_pred             CeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294          358 EWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG  394 (466)
Q Consensus       358 ~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~  394 (466)
                      .|..+.+    |..  +| .++.+++++++||+.-|-
T Consensus       223 ~W~~~~~----~p~--~r-~~~~~~~~~~~l~v~GG~  252 (315)
T 4asc_A          223 KWAPFEA----FPQ--ER-SSLSLVSLVGTLYAIGGF  252 (315)
T ss_dssp             EEEEECC----CSS--CC-BSCEEEEETTEEEEEEEE
T ss_pred             eEEECCC----CCC--cc-cceeEEEECCEEEEECCc
Confidence            8999987    663  66 788899999999998664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.90  E-value=2.8e-22  Score=198.31  Aligned_cols=223  Identities=12%  Similarity=0.165  Sum_probs=165.2

Q ss_pred             CCcEEEEcCCceeeEe-----cCCCCCC--CccccceeeeeecccCCcEEEEecccCC--Cc--eeccceeeeeCCCCce
Q 012294          142 YGTLHVSHGSKITSFD-----WSMRKKS--TILTHFTAVDSLLALSPGVAAAGATDFS--GL--QVLDLENGYVKETLNW  210 (466)
Q Consensus       142 ~g~lyva~GG~ve~YD-----W~~a~m~--~~R~~~~~v~sl~~l~~~lYaiGG~~~~--g~--~~l~svE~ydp~t~~W  210 (466)
                      ++.||+.+|..+++||     |..++|+  .+|..+++++    ++++||++||...+  +.  ...+.+++|||.+++|
T Consensus        15 ~~~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~----~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   90 (318)
T 2woz_A           15 KDLILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVT----QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW   90 (318)
T ss_dssp             EEEEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEEC----SSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred             cchhhhccccceEEECCCCCceecccCCccCCccceEEEE----ECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence            4678855444578999     9874443  6788877766    89999999993222  11  1223489999999999


Q ss_pred             eecCCC---CCceeEEEEECCeEEE-EecC--CCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-----eE
Q 012294          211 ENVTRS---SSTVQAIGSSDKHLFV-SFES--GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-----RW  279 (466)
Q Consensus       211 ~~va~M---r~~~~Ava~l~~~IYa-Gg~~--g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-----~~  279 (466)
                      +.+++|   |..++ +++++++||+ ||.+  +...++.+++||+.+               +.|+.++++..     ..
T Consensus        91 ~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~---------------~~W~~~~~~p~~r~~~~~  154 (318)
T 2woz_A           91 VGLPPLPSARCLFG-LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVA---------------AKWSEVKNLPIKVYGHNV  154 (318)
T ss_dssp             EECSCBSSCBCSCE-EEEETTEEEEEEEEBTTTCCEEEEEEEEETTT---------------TEEEEECCCSSCEESCEE
T ss_pred             EECCCCCccccccc-eEEECCEEEEEcCccCCCCcccceEEEEeCCC---------------CCEeECCCCCCcccccEE
Confidence            999998   66665 7889999999 8864  334488999999999               66887775532     23


Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC-CC
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-SS  357 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-~~  357 (466)
                      +..++.||+.||.+......+.+++||+.+++  |+...+ -.++...++...++.||.+|+.++.-...++-...- ++
T Consensus       155 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          155 ISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            35899999999986555567789999999999  998866 445666677777889999999776532222222221 68


Q ss_pred             CeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          358 EWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       358 ~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      .|..+.+    |..  +| .++.++.++++||+.-|
T Consensus       233 ~W~~~~~----~p~--~r-~~~~~~~~~~~i~v~GG  261 (318)
T 2woz_A          233 KWEVMTE----FPQ--ER-SSISLVSLAGSLYAIGG  261 (318)
T ss_dssp             CEEECCC----CSS--CC-BSCEEEEETTEEEEECC
T ss_pred             eEEECCC----CCC--cc-cceEEEEECCEEEEECC
Confidence            8999987    653  56 77889999999999865

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=99.87  E-value=9.8e-23  Score=174.56  Aligned_cols=88  Identities=43%  Similarity=0.641  Sum_probs=79.4

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC----------C-ceeEcCCchhHHHHhcccccCccccCCCCcC
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS----------T-HRFIDRDPELFSILLSLLRTGNLPSKAKAFD   88 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~----------~-~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~   88 (466)
                      +.++.|+|||||++|+|+++||++ +|+|+|++||+.          + +|||||||.+|++||||||+|+|++ |.+.+
T Consensus         3 ~~~~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~-p~~~~   80 (107)
T 3drz_A            3 SVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVI-NKDLA   80 (107)
T ss_dssp             --CCEEEEEETTEEEEEEHHHHTS-STTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCC-CTTSC
T ss_pred             CCCCEEEEEECCEEEEECHHHHhc-CCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCC-CCCCC
Confidence            457899999999999999999998 999999999863          1 3999999999999999999999998 66788


Q ss_pred             hHHHHHhhccccchhhHHhhc
Q 012294           89 IEDLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        89 ~~~Ll~EA~f~~l~~l~~~~~  109 (466)
                      ...|++||+||+|.+|++.|+
T Consensus        81 ~~~l~~Ea~fy~l~~L~~~l~  101 (107)
T 3drz_A           81 EEGVLEEAEFYNITSLIKLVK  101 (107)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHH
Confidence            899999999999999999884

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=99.86  E-value=4e-22  Score=172.94  Aligned_cols=87  Identities=30%  Similarity=0.398  Sum_probs=77.8

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------C-ceeEcCCchhHHHHhcccccCccccCCCCcChHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------T-HRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDL   92 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~-~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~L   92 (466)
                      +++.|+|||||++|+|+++||++ +|+|+|++|++.       + +|||||||.+|++||||||+|+|++ |.+.+...|
T Consensus         3 ~~~~V~LNVGG~~f~T~~~TL~~-~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~-p~~~~~~~~   80 (115)
T 3kvt_A            3 AENRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHY-PTDVCGPLF   80 (115)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCC-CSSSCHHHH
T ss_pred             CCCEEEEEECCEEEEecHHHHhc-CCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCCC-CCcccHHHH
Confidence            57899999999999999999998 899999999974       2 3999999999999999999999998 667889999


Q ss_pred             HHhhccccchhhH-Hhhc
Q 012294           93 IEESKFYNIESLL-INSQ  109 (466)
Q Consensus        93 l~EA~f~~l~~l~-~~~~  109 (466)
                      ++||+||+|.+.. ..|+
T Consensus        81 ~~Ea~fy~i~~~~l~~CC   98 (115)
T 3kvt_A           81 EEELEFWGLDSNQVEPCC   98 (115)
T ss_dssp             HHHHHHHTCCGGGBCGGG
T ss_pred             HHHHHHhCCChHHHHHHH
Confidence            9999999999975 4453

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=99.86  E-value=5.1e-22  Score=177.83  Aligned_cols=104  Identities=31%  Similarity=0.483  Sum_probs=86.5

Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C-ceeEcCCchhHHHHhc
Q 012294            1 MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T-HRFIDRDPELFSILLS   73 (466)
Q Consensus         1 ~~~~~~~~p~~~~~~~~~~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~fiDRDp~~F~~IL~   73 (466)
                      +|+-+.+|||.....  .+..++.|+|||||++|+|+++||++ +|+|+|.+.-..      + +|||||||.+|++|||
T Consensus        15 ~p~~~~~~~~~~~~~--~~~~~~~V~LNVGG~~F~T~~~TL~~-~P~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILn   91 (140)
T 2nz0_B           15 MPVANCPMPLAPADK--NKRQDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLN   91 (140)
T ss_dssp             SSSSCCSSCSSCGGG--CTTCCCEEEEEETTEEEEEEHHHHHT-CTTSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHH
T ss_pred             cccccCCCCCCcccc--cCCCCCEEEEEECCEEEEeeHHHHhc-CCCeeecccCCcccccCCCCeEEEeCCcHHHHHHHH
Confidence            467777787755422  23457899999999999999999998 999999984221      2 3999999999999999


Q ss_pred             ccccCccccCCCCcChHHHHHhhccccchhhH-Hhh
Q 012294           74 LLRTGNLPSKAKAFDIEDLIEESKFYNIESLL-INS  108 (466)
Q Consensus        74 ylrtG~l~~~~~~~~~~~Ll~EA~f~~l~~l~-~~~  108 (466)
                      |||+|+|++ |.+.+...|++||+||+|.+++ +.|
T Consensus        92 flR~G~l~~-p~~~~~~~l~eEa~fy~i~~l~l~~C  126 (140)
T 2nz0_B           92 FYRTGKLHY-PRYECISAYDDELAFYGILPEIIGDC  126 (140)
T ss_dssp             HHHHSSBCC-CTTSCHHHHHHHHHHHTCCGGGBCTT
T ss_pred             HHhcCCcCC-CCCcCHHHHHHHHHHcCCChHHHHHH
Confidence            999999997 6678899999999999999984 555

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.86  E-value=1e-20  Score=189.44  Aligned_cols=212  Identities=11%  Similarity=0.100  Sum_probs=151.0

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCCc-------------eeeEe-----cCC-CCCC-CccccceeeeeecccCCc
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK-------------ITSFD-----WSM-RKKS-TILTHFTAVDSLLALSPG  182 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~-------------ve~YD-----W~~-a~m~-~~R~~~~~v~sl~~l~~~  182 (466)
                      +++|+..+|..++  ++.+++.||+. ||.             +++||     |.. ++|. .+|..+++++    ++++
T Consensus        48 ~~~~p~~~R~~~~--~~~~~~~lyv~-GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~----~~~~  120 (357)
T 2uvk_A           48 LAAFPGGPRDQAT--SAFIDGNLYVF-GGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV----HNGK  120 (357)
T ss_dssp             CCCCTTCCCBSCE--EEEETTEEEEE-CCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE----ETTE
T ss_pred             CCCCCCCcCccce--EEEECCEEEEE-cCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE----ECCE
Confidence            4456645788887  78889999955 554             46798     999 8888 8888887776    9999


Q ss_pred             EEEEecccCCCce----------------------------------eccceeeeeCCCCceeecCCC---CCceeEEEE
Q 012294          183 VAAAGATDFSGLQ----------------------------------VLDLENGYVKETLNWENVTRS---SSTVQAIGS  225 (466)
Q Consensus       183 lYaiGG~~~~g~~----------------------------------~l~svE~ydp~t~~W~~va~M---r~~~~Ava~  225 (466)
                      ||++||  .++..                                  .++.+++|||.+++|+.+++|   |+...++++
T Consensus       121 iyv~GG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~  198 (357)
T 2uvk_A          121 AYVTGG--VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN  198 (357)
T ss_dssp             EEEEEC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE
T ss_pred             EEEEeC--cCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE
Confidence            999999  65432                                  468999999999999999988   455244789


Q ss_pred             ECCeEEE-EecCCC-cCCCeeEEEec--CCCCccccccccccccCCceeecCcce-------eeEEeeCCeEEEEeecCC
Q 012294          226 SDKHLFV-SFESGR-RNSNSIMVYDI--NSLKPVNEIGQNEIYGTDIESAIPATK-------LRWVSSYNLLLASGSHSD  294 (466)
Q Consensus       226 l~~~IYa-Gg~~g~-~~l~sVE~YDp--~t~~~~~~~~~~~~~~~~~w~~~~~~k-------~~~~~~~~~Lyv~Gg~~g  294 (466)
                      ++++||+ ||.++. ...+.+++||+  ++               +.|+.+++|.       ......++.||++||.+.
T Consensus       199 ~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~---------------~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~  263 (357)
T 2uvk_A          199 KGDKTWLINGEAKPGLRTDAVFELDFTGNN---------------LKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGF  263 (357)
T ss_dssp             ETTEEEEECCEEETTEECCCEEEEECC------------------CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEEC
T ss_pred             ECCEEEEEeeecCCCcccCceEEEEecCCC---------------CcEEecCCCCCCcccccceEEEECCEEEEEcCccc
Confidence            9999999 775332 23788999986  66               5577666542       124568999999999653


Q ss_pred             CC----------------cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc------eeEeecc
Q 012294          295 IS----------------KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE------VSYMDLR  351 (466)
Q Consensus       295 ~~----------------~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~------l~~~dlr  351 (466)
                      ..                ..+..+++||+.+++  |+..++ -..|...++...++.||.+|+.++.      +++.+|+
T Consensus       264 ~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~  341 (357)
T 2uvk_A          264 KGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVK  341 (357)
T ss_dssp             TTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-
T ss_pred             cCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEc
Confidence            21                123579999999999  998765 3445556666688899999996543      3333333


Q ss_pred             ccCCCCCeEEecc
Q 012294          352 KLGDSSEWICLGD  364 (466)
Q Consensus       352 ~~~~~~~W~~~~~  364 (466)
                          .+.|+...+
T Consensus       342 ----~~~~~~~~~  350 (357)
T 2uvk_A          342 ----DNKVTVQNL  350 (357)
T ss_dssp             ----CCSCEEEC-
T ss_pred             ----CcEeEeeec
Confidence                577887765

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=99.86  E-value=4.1e-22  Score=168.74  Aligned_cols=82  Identities=28%  Similarity=0.434  Sum_probs=74.6

Q ss_pred             CeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------CceeEcCCchhHHHHhccccc-CccccCCCCcChHHHH
Q 012294           23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------THRFIDRDPELFSILLSLLRT-GNLPSKAKAFDIEDLI   93 (466)
Q Consensus        23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~~~fiDRDp~~F~~IL~ylrt-G~l~~~~~~~~~~~Ll   93 (466)
                      ++|+|||||++|+|+++||++ +|+|+|++|++.        ++|||||||.+|++||||||+ |+|++ |++.+...|+
T Consensus         1 ~~v~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~-p~~~~~~~~~   78 (100)
T 1t1d_A            1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRR-PVNVPLDVFS   78 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCC-CTTSCHHHHH
T ss_pred             CEEEEEECCEEEEeeHHHHhc-CCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCcccC-CCCCCHHHHH
Confidence            479999999999999999998 999999999862        239999999999999999999 99997 6678999999


Q ss_pred             HhhccccchhhHH
Q 012294           94 EESKFYNIESLLI  106 (466)
Q Consensus        94 ~EA~f~~l~~l~~  106 (466)
                      +||+||+|.+++.
T Consensus        79 ~Ea~fy~i~~~~~   91 (100)
T 1t1d_A           79 EEIKFYELGENAF   91 (100)
T ss_dssp             HHHHHTTCCHHHH
T ss_pred             HHHHHcCCCHHHH
Confidence            9999999999753

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=99.84  E-value=2e-21  Score=170.70  Aligned_cols=87  Identities=31%  Similarity=0.482  Sum_probs=75.8

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccC-----C--CceeEcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLAD-----S--THRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI   93 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~-----~--~~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll   93 (466)
                      .++.|+|||||++|+|+++||++ +|+|+|++.-.     +  ++|||||||.+|++||||||+|+|++ |.+.+...|+
T Consensus        11 ~~~~V~LNVGG~~F~t~~~TL~~-~p~S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~-p~~~~~~~l~   88 (124)
T 1s1g_A           11 QDELIVLNVSGRRFQTWRTTLER-YPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHY-PRYECISAYD   88 (124)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTT-STTSSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCC-CTTSCHHHHH
T ss_pred             CCCEEEEEeCCEEEEEeHHHHhc-CCCceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCC-CCCcCHHHHH
Confidence            46899999999999999999998 99999988221     1  23999999999999999999999997 6678899999


Q ss_pred             HhhccccchhhH-Hhhc
Q 012294           94 EESKFYNIESLL-INSQ  109 (466)
Q Consensus        94 ~EA~f~~l~~l~-~~~~  109 (466)
                      +||+||+|.+++ +.|+
T Consensus        89 ~Ea~fy~i~~l~l~~cC  105 (124)
T 1s1g_A           89 DELAFYGILPEIIGDCC  105 (124)
T ss_dssp             HHHHHTTCCGGGBCHHH
T ss_pred             HHHHHcCCChHHHHHHH
Confidence            999999999984 6663

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=99.83  E-value=5.1e-21  Score=180.19  Aligned_cols=89  Identities=42%  Similarity=0.618  Sum_probs=81.8

Q ss_pred             CCCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------C---ceeEcCCchhHHHHhcccccCccccCCCC
Q 012294           18 KSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------T---HRFIDRDPELFSILLSLLRTGNLPSKAKA   86 (466)
Q Consensus        18 ~~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~---~~fiDRDp~~F~~IL~ylrtG~l~~~~~~   86 (466)
                      +...++.|+|||||++|+|+++||++ +|+|+|.+||+.        +   +|||||||.+|++||||||+|+|++ |.+
T Consensus         7 ~g~~~~~V~LNVGG~~F~Tt~sTL~r-~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~l-P~~   84 (202)
T 3drx_A            7 PGSVSKWVRLNVGGTYFLTTRQTLCR-DPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVI-NKD   84 (202)
T ss_dssp             SSCCCCEEEEEETTEEEEEETTGGGS-CTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCC-CTT
T ss_pred             CCCCCCEEEEEECCEEEEEeHHHHhC-CCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCC-CCC
Confidence            45667999999999999999999998 999999999863        1   2999999999999999999999998 678


Q ss_pred             cChHHHHHhhccccchhhHHhh
Q 012294           87 FDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        87 ~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                      .+...|++||+||+|.+|++.|
T Consensus        85 ~~~~~l~eEA~FygL~~Lv~~l  106 (202)
T 3drx_A           85 LAEEGVLEEAEFYNITSLIKLV  106 (202)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHCCcHHHHHHH
Confidence            8889999999999999999998

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.82  E-value=1.3e-19  Score=197.61  Aligned_cols=258  Identities=15%  Similarity=0.140  Sum_probs=171.2

Q ss_pred             ccccCCCCCCCCCc-eeeecCCcEEEEcCC----ceeeEe-----cCC-CCCCCccccceeeeeeccc-CCcEEEEeccc
Q 012294          123 SLILPLNGRDSPSA-IATTNYGTLHVSHGS----KITSFD-----WSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATD  190 (466)
Q Consensus       123 va~l~~~~R~~~~a-~~a~~~g~lyva~GG----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~  190 (466)
                      +.+|+ .+|..+++ .++..++.||++ ||    .+++||     |.. ++|+.+|..+++++    + +++||++||. 
T Consensus       234 ~~~~~-~~~~~~~~~~~~~~~g~lyv~-GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~----~~dg~iyv~GG~-  306 (656)
T 1k3i_A          234 RTVTV-TKHDMFCPGISMDGNGQIVVT-GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT----MSDGRVFTIGGS-  306 (656)
T ss_dssp             CEEEE-CSCCCSSCEEEECTTSCEEEE-CSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEE----CTTSCEEEECCC-
T ss_pred             CcccC-CCCCCccccccCCCCCCEEEe-CCCCCCceEEecCcCCceeECCCCCccccccceEE----ecCCeEEEEeCc-
Confidence            34555 55655542 233468999955 55    378999     999 99999999988777    7 9999999993 


Q ss_pred             CCCceeccceeeeeCCCCceeec-----CCC--CCceeEEEEECCeEEE-EecCCCc----CCCeeEEEecCCCCccccc
Q 012294          191 FSGLQVLDLENGYVKETLNWENV-----TRS--SSTVQAIGSSDKHLFV-SFESGRR----NSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       191 ~~g~~~l~svE~ydp~t~~W~~v-----a~M--r~~~~Ava~l~~~IYa-Gg~~g~~----~l~sVE~YDp~t~~~~~~~  258 (466)
                      .++...++++|+|||.+++|+.+     ++|  +...+ +++.+++||+ ||.++..    .++.+++||+.+.+-...+
T Consensus       307 ~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~-~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~  385 (656)
T 1k3i_A          307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG-LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA  385 (656)
T ss_dssp             CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG-GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred             ccCCcccccceEeCCCCCcceeCCCccccccccccccc-eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence            24455789999999999999987     556  22233 5678999999 8776542    3689999999992211111


Q ss_pred             cccccccCCceeecCcce-eeEE--eeCCeEEEEeecCCCC--cccc---eEEEEeCCCCeeeeEEcC--C-ccccccee
Q 012294          259 GQNEIYGTDIESAIPATK-LRWV--SSYNLLLASGSHSDIS--KVTG---NIKFWDIRSGNVAWEVKD--E-VDCFSDVT  327 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~k-~~~~--~~~~~Lyv~Gg~~g~~--~~~~---sVe~yDprt~~~vW~~~~--~-~d~~~~~~  327 (466)
                      +....   ......+++. ...+  ..++.||++||.++..  ..+.   .|++|||.+++  |+...  + -..|...+
T Consensus       386 ~~~~~---~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          386 GKRQS---NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHT  460 (656)
T ss_dssp             EECEE---TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCE
T ss_pred             Ccccc---ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCC
Confidence            11100   0000000000 1111  2589999999965311  1233   79999999999  98764  2 33444444


Q ss_pred             eecC-CCceEEEEEeeC-----------ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeC
Q 012294          328 VSDN-LSAIYKVGINSG-----------EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKG  393 (466)
Q Consensus       328 v~~~-~~~i~~v~~~~g-----------~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~  393 (466)
                      +... ++.||.+|+.+.           ++.+-|..    .+.|..+.+    |..  +| .++..++.  +|+||++-|
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~----t~~W~~~~~----~~~--~R-~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE----QDTFYKQNP----NSI--VR-VYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG----GTEEEECCC----CSS--CC-CTTEEEEECTTSCEEEEEC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC----CCceeecCC----CCC--cc-ccccHhhcCCCcEEEecCC
Confidence            4443 778999999652           23333332    578999887    664  67 77888887  999999988


Q ss_pred             C----------eEEEeEeeee
Q 012294          394 G----------EIELWSEIVM  404 (466)
Q Consensus       394 ~----------~~~v~~~~~~  404 (466)
                      +          ++|+|+-+-+
T Consensus       530 ~~~~~~~~~~~~~e~~~Ppyl  550 (656)
T 1k3i_A          530 GLCGDCTTNHFDAQIFTPNYL  550 (656)
T ss_dssp             CCCTTCSCCCCEEEEEECGGG
T ss_pred             CCCCCCCCCeeEEEEEeChhh
Confidence            5          4777776644

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=99.82  E-value=8.6e-21  Score=162.02  Aligned_cols=84  Identities=30%  Similarity=0.474  Sum_probs=74.0

Q ss_pred             eEEEEECCeEEEEeHHHhhccCCCCccccccCC-------CceeEcCCchhHHHHhcccccCccccCCCCcChHHHHHhh
Q 012294           24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------THRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEES   96 (466)
Q Consensus        24 ~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA   96 (466)
                      +|+|||||++|+|+++||++ +|+|+|+++-..       ++|||||||.+|++||||||+|+|++ |.+.+...|++||
T Consensus         1 ~V~LNVGG~~f~t~~~TL~~-~p~s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~-p~~~~~~~l~~Ea   78 (105)
T 1nn7_A            1 LIVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHY-PRHECISAYDEEL   78 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHT-SCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCC-CTTSCHHHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhc-CCCccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCC-CCCcCHHHHHHHH
Confidence            58999999999999999998 999999995331       23999999999999999999999997 5678899999999


Q ss_pred             ccccchhhH-Hhhc
Q 012294           97 KFYNIESLL-INSQ  109 (466)
Q Consensus        97 ~f~~l~~l~-~~~~  109 (466)
                      +||+|.+++ +.|+
T Consensus        79 ~fy~i~~l~~~~cc   92 (105)
T 1nn7_A           79 AFFGLIPEIIGDCC   92 (105)
T ss_dssp             HHHTCCSCCBCHHH
T ss_pred             HHcCCCHHHHHHHH
Confidence            999999974 5553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.81  E-value=2.1e-19  Score=196.03  Aligned_cols=219  Identities=13%  Similarity=0.021  Sum_probs=153.1

Q ss_pred             CCcEEEEcCC-------------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceee
Q 012294          142 YGTLHVSHGS-------------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENG  202 (466)
Q Consensus       142 ~g~lyva~GG-------------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~  202 (466)
                      ++.||+.+|.             .+.+||     |.. ++|+..|..++... ....+++||++||  +++.    .+++
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~-~~~~~g~lyv~GG--~~~~----~v~~  269 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI-SMDGNGQIVVTGG--NDAK----KTSL  269 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE-EECTTSCEEEECS--SSTT----CEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccc-cCCCCCCEEEeCC--CCCC----ceEE
Confidence            8999966441             246798     998 88888887765221 0126899999999  6542    7999


Q ss_pred             eeCCCCceeecCCC---CCceeEEEEE-CCeEEE-Ee-cCCCcCCCeeEEEecCCCCccccccccccccCCceeec----
Q 012294          203 YVKETLNWENVTRS---SSTVQAIGSS-DKHLFV-SF-ESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAI----  272 (466)
Q Consensus       203 ydp~t~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg-~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~----  272 (466)
                      |||.+++|+.+++|   |..++ ++++ +++||+ || .++...++++|+|||.+               +.|+.+    
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s-~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t---------------~~W~~~~~~~  333 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQS-SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS---------------KTWTSLPNAK  333 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCE-EEECTTSCEEEECCCCCSSSCCCCEEEEETTT---------------TEEEEETTSC
T ss_pred             ecCcCCceeECCCCCccccccc-eEEecCCeEEEEeCcccCCcccccceEeCCCC---------------CcceeCCCcc
Confidence            99999999999999   66665 6788 999999 88 55555689999999999               667775    


Q ss_pred             -Ccceee----EEeeCCeEEEEeecCCCC---cccceEEEEeCCCCeeeeEEcCC--c-------ccccceeee--cCCC
Q 012294          273 -PATKLR----WVSSYNLLLASGSHSDIS---KVTGNIKFWDIRSGNVAWEVKDE--V-------DCFSDVTVS--DNLS  333 (466)
Q Consensus       273 -~~~k~~----~~~~~~~Lyv~Gg~~g~~---~~~~sVe~yDprt~~~vW~~~~~--~-------d~~~~~~v~--~~~~  333 (466)
                       ++|...    ....++.||+.||.+|..   +....|+.||+.+++  |.....  .       ++++..++.  ..++
T Consensus       334 ~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~  411 (656)
T 1k3i_A          334 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG--DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  411 (656)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC--EEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             ccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc--eeecCCccccccccCCCCCCCceEeccCCCC
Confidence             334332    223789999999988752   235689999999998  653211  1       122333433  4678


Q ss_pred             ceEEEEEeeC---ceeE-----eeccccCCCCCeEEec--cCCccccccccccceeEEEEE-CCEEEEEeC
Q 012294          334 AIYKVGINSG---EVSY-----MDLRKLGDSSEWICLG--DGRKMVNGKRKEGFGCKIECH-ANQVFCGKG  393 (466)
Q Consensus       334 ~i~~v~~~~g---~l~~-----~dlr~~~~~~~W~~~~--~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~~  393 (466)
                      .||.+|+.++   .-..     +++-..+ .+.|..+.  +    |..  +| ..+..+++ +|+||+.-|
T Consensus       412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~----mp~--~R-~~~~~~~l~~g~i~v~GG  474 (656)
T 1k3i_A          412 KILTFGGSPDYQDSDATTNAHIITLGEPG-TSPNTVFASNG----LYF--AR-TFHTSVVLPDGSTFITGG  474 (656)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTT-SCCEEEECTTC----CSS--CC-BSCEEEECTTSCEEEECC
T ss_pred             eEEEEeCCCCCCCCCcCCcceEEEcCCCC-CCCeeEEccCC----CCC--Cc-ccCCeEECCCCCEEEECC
Confidence            9999999543   1111     1111122 68899887  4    663  56 66666666 999999977

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.81  E-value=5.7e-19  Score=194.88  Aligned_cols=227  Identities=11%  Similarity=0.039  Sum_probs=158.2

Q ss_pred             eecCCcEEEEcCCc-------eeeEe-----cCC-C-C-----CCCccccceeeeeeccc--CCcEEEEecccCCCce-e
Q 012294          139 TTNYGTLHVSHGSK-------ITSFD-----WSM-R-K-----KSTILTHFTAVDSLLAL--SPGVAAAGATDFSGLQ-V  196 (466)
Q Consensus       139 a~~~g~lyva~GG~-------ve~YD-----W~~-a-~-----m~~~R~~~~~v~sl~~l--~~~lYaiGG~~~~g~~-~  196 (466)
                      ++.++.||+. ||.       +++||     |.. + +     |+.+|..|++++    +  +++||++||  .++.. .
T Consensus       394 ~~~~~~iyv~-GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~----~~~~~~lyv~GG--~~~~~~~  466 (695)
T 2zwa_A          394 DVAGNDVFYM-GGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT----ISRNNQLLLIGG--RKAPHQG  466 (695)
T ss_dssp             EECSSCEEEE-CCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE----ETTTTEEEEECC--BSSTTCB
T ss_pred             EEECCEEEEE-CCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE----EccCCEEEEEcC--CCCCCCc
Confidence            4489999955 653       57898     988 6 5     889999998887    8  999999999  55433 6


Q ss_pred             ccceeeeeCCCCceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceee
Q 012294          197 LDLENGYVKETLNWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA  271 (466)
Q Consensus       197 l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~  271 (466)
                      ++.+++||+.+++|+.+++|   |..++ ++++ +++||+ ||.++..   .+++||+.+               +.|+.
T Consensus       467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~---~v~~yd~~t---------------~~W~~  527 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGP---AMLLYNVTE---------------EIFKD  527 (695)
T ss_dssp             CCCCEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSC---SEEEEETTT---------------TEEEE
T ss_pred             cccEEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCC---CEEEEECCC---------------CceEE
Confidence            89999999999999999999   76666 5665 999999 8875543   899999999               66777


Q ss_pred             cCc---cee-----eEEeeC---CeEEEEeecCCCC-cccceEEEEeCCCCe----eeeEEcCC--cccccceeeecCC-
Q 012294          272 IPA---TKL-----RWVSSY---NLLLASGSHSDIS-KVTGNIKFWDIRSGN----VAWEVKDE--VDCFSDVTVSDNL-  332 (466)
Q Consensus       272 ~~~---~k~-----~~~~~~---~~Lyv~Gg~~g~~-~~~~sVe~yDprt~~----~vW~~~~~--~d~~~~~~v~~~~-  332 (466)
                      +++   +..     ..+.++   +.||+.||.+... ..++.+++||+.+++    +.|+...+  ...|...++...+ 
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~  607 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP  607 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred             ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence            664   211     112334   8999999985432 357789999999998    23554422  3455666666666 


Q ss_pred             CceEEEEEeeC--------ceeEeeccccCCCCCeEEeccCCcccc-ccccccceeEEEEECC-EEEEEeCCeE
Q 012294          333 SAIYKVGINSG--------EVSYMDLRKLGDSSEWICLGDGRKMVN-GKRKEGFGCKIECHAN-QVFCGKGGEI  396 (466)
Q Consensus       333 ~~i~~v~~~~g--------~l~~~dlr~~~~~~~W~~~~~~~~~m~-~~~~~~~~~~~~~~~~-~lf~~~~~~~  396 (466)
                      +.||.+|+.++        +++..|+.    ++.|..+.-.. ... ...+.-.++..+++++ +||+.-|+..
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~----t~~W~~~~~p~-~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~  676 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPL----SETLTSIPISR-RIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT  676 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETT----TTEEEECCCCH-HHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECC----CCeEEEeeccc-cccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence            89999999653        35555543    47798543211 000 0001114566666665 8999888654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.76  E-value=1.1e-17  Score=184.63  Aligned_cols=191  Identities=17%  Similarity=0.085  Sum_probs=137.0

Q ss_pred             cCCCCCCCCCceeeec--CCcEEEEcCCc---------eeeEe-----cCC-CCCCCccccceeeeeeccc-CCcEEEEe
Q 012294          126 LPLNGRDSPSAIATTN--YGTLHVSHGSK---------ITSFD-----WSM-RKKSTILTHFTAVDSLLAL-SPGVAAAG  187 (466)
Q Consensus       126 l~~~~R~~~~a~~a~~--~g~lyva~GG~---------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiG  187 (466)
                      |+ .+|..++  ++.+  ++.||++ ||.         +++||     |.. ++|+.+|..+++++    + +++||++|
T Consensus       436 ~p-~~R~~hs--~~~~~~~~~lyv~-GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~----~~~~~iyv~G  507 (695)
T 2zwa_A          436 VP-VARMCHT--FTTISRNNQLLLI-GGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS----LPDGNVLILG  507 (695)
T ss_dssp             CC-CCCBSCE--EEEETTTTEEEEE-CCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEE----CTTSCEEEEC
T ss_pred             CC-ccccceE--EEEEccCCEEEEE-cCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEE----EcCCEEEEEC
Confidence            55 7888888  7888  9999965 542         47899     999 99999999998887    6 99999999


Q ss_pred             cccCCCceeccceeeeeCCCCceeecCC---C---CCceeEEEEEC---CeEEE-EecC--CCcCCCeeEEEecCCCCcc
Q 012294          188 ATDFSGLQVLDLENGYVKETLNWENVTR---S---SSTVQAIGSSD---KHLFV-SFES--GRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       188 G~~~~g~~~l~svE~ydp~t~~W~~va~---M---r~~~~Ava~l~---~~IYa-Gg~~--g~~~l~sVE~YDp~t~~~~  255 (466)
                      |  .++..   .+++|||.+++|+.+++   |   |..++ +++++   ++||+ ||.+  +...++.+++|||.+    
T Consensus       508 G--~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~-a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----  577 (695)
T 2zwa_A          508 G--VTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSA-GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA----  577 (695)
T ss_dssp             C--BCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSC-EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT----
T ss_pred             C--CCCCC---CEEEEECCCCceEEccCCCCCCCccccee-EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC----
Confidence            9  65544   89999999999999986   5   66665 46666   88999 8863  334589999999999    


Q ss_pred             ccccccccccCCceeecCcc------eeeEEeeC-CeEEEEeecCCCC--cccceEEEEeCCCCeeeeEEcCCc-c----
Q 012294          256 NEIGQNEIYGTDIESAIPAT------KLRWVSSY-NLLLASGSHSDIS--KVTGNIKFWDIRSGNVAWEVKDEV-D----  321 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~------k~~~~~~~-~~Lyv~Gg~~g~~--~~~~sVe~yDprt~~~vW~~~~~~-d----  321 (466)
                         ++|+  -.-.|+.++++      ....+..+ +.||++||.++..  ...+.|++||+.+++  |+...-. .    
T Consensus       578 ---~~w~--~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~p~~~~~~  650 (695)
T 2zwa_A          578 ---ENAT--EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET--LTSIPISRRIWED  650 (695)
T ss_dssp             ---TCSS--CCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE--EEECCCCHHHHHH
T ss_pred             ---Cccc--cceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe--EEEeeccccccCC
Confidence               2110  00126666432      12344567 9999999987653  246789999999999  9854321 0    


Q ss_pred             ---cccceeeec-CCCceEEEEEe
Q 012294          322 ---CFSDVTVSD-NLSAIYKVGIN  341 (466)
Q Consensus       322 ---~~~~~~v~~-~~~~i~~v~~~  341 (466)
                         .+...++.. .++.||.+||.
T Consensus       651 ~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          651 HSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             SCCCCSSCEEECC---CEEEECCE
T ss_pred             CCccceeeeEEEeCCCEEEEEeCC
Confidence               123343444 33489999983

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.66  E-value=5.2e-17  Score=173.72  Aligned_cols=84  Identities=27%  Similarity=0.417  Sum_probs=75.9

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------CceeEcCCchhHHHHhccccc-CccccCCCCcChH
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------THRFIDRDPELFSILLSLLRT-GNLPSKAKAFDIE   90 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~~~fiDRDp~~F~~IL~ylrt-G~l~~~~~~~~~~   90 (466)
                      ..+++|+|||||++|+|+++||++ +|+|+|+++++.        ++|||||||.+|++||||||+ |+|++ |.+.+.+
T Consensus        49 ~~~~~v~lNVgG~~f~t~~~tL~~-~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~-p~~~~~~  126 (514)
T 2r9r_B           49 ESSERVVINISGLRFETQLKTLAQ-FPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRR-PVNVPLD  126 (514)
T ss_dssp             --CCEEEEEETTEEEEEEHHHHTT-STTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCC-CTTSCHH
T ss_pred             CCCCEEEEEeCCEEEEecHHHHhc-CCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCcccc-CCcccHH
Confidence            347899999999999999999998 899999998862        349999999999999999999 99997 6788999


Q ss_pred             HHHHhhccccchhhH
Q 012294           91 DLIEESKFYNIESLL  105 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~  105 (466)
                      .|++||+||+|+++.
T Consensus       127 ~~~~E~~f~~i~~~~  141 (514)
T 2r9r_B          127 IFSEEIRFYELGEEA  141 (514)
T ss_dssp             HHHHHHHHTTCCHHH
T ss_pred             HHHHHHHhcCCCHHH
Confidence            999999999999975

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.07  E-value=6e-11  Score=104.49  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=74.1

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESK   97 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~   97 (466)
                      -.||+|.|+|+.|.+||.+|+++  ++||++||.+   +.+ +.|.+++.|+.+|+|+|||++.+.  ..++.+|+..|+
T Consensus        25 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~--~~~v~~ll~~A~  100 (135)
T 2yy9_A           25 YCDATLDVGGLVFKAHWSVLACC--SHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALT--SGNRDQVLLAAK  100 (135)
T ss_dssp             TCCEEEEETTEEEEECHHHHHHH--CHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCC--TTTHHHHHHHHH
T ss_pred             CcceEEEECCEEEehHHHHHHHh--CHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHH
Confidence            45899999999999999999984  5699999986   234 568899999999999999999875  478999999999


Q ss_pred             cccchhhHHhhc
Q 012294           98 FYNIESLLINSQ  109 (466)
Q Consensus        98 f~~l~~l~~~~~  109 (466)
                      +|+|+.|++.|.
T Consensus       101 ~l~i~~L~~~C~  112 (135)
T 2yy9_A          101 ELRVPEAVELCQ  112 (135)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCcHHHHHHHH
Confidence            999999999994

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.07  E-value=5.5e-11  Score=102.31  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=74.5

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESK   97 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~   97 (466)
                      -.||+|.|||+.|.+||.+|+++  ++||++||.+   +.+ +.|.+|+.|+.+|+|+|||++.++  ..++.+|+..|+
T Consensus        24 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~--~~~v~~ll~~A~   99 (119)
T 3b84_A           24 YCDATLDVGGLVFKAHWSVLACC--SHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALT--SGNRDQVLLAAR   99 (119)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCCCCC--TTTHHHHHHHHH
T ss_pred             CcceEEEECCEEEEeeHHHHhhc--CHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCCccC--HHHHHHHHHHHH
Confidence            46899999999999999999984  5599999986   234 668899999999999999999975  468999999999


Q ss_pred             cccchhhHHhhc
Q 012294           98 FYNIESLLINSQ  109 (466)
Q Consensus        98 f~~l~~l~~~~~  109 (466)
                      +|+|+.+.+.|.
T Consensus       100 ~~~i~~L~~~C~  111 (119)
T 3b84_A          100 ELRVPEAVELCQ  111 (119)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCcHHHHHHHH
Confidence            999999999993

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.06  E-value=7.6e-11  Score=100.69  Aligned_cols=84  Identities=17%  Similarity=0.313  Sum_probs=73.9

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---Cce-eE--cCCchhHHHHhcccccCccccCCCCcChHHHHHh
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---THR-FI--DRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEE   95 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---~~~-fi--DRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~E   95 (466)
                      -.||+|.|||+.|.+||.+|+++  ++||++||.+   +.+ +.  |.+|+.|+.+|+|+|||++.++  ..++.+|+..
T Consensus        22 ~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~--~~~v~~ll~~   97 (116)
T 2vpk_A           22 LCDCTIVIGEFQFKAHRNVLASF--SEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLD--SWNVKEIHQA   97 (116)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCCCCC--TTTHHHHHHH
T ss_pred             CCcEEEEECCEEEeccHHHHhhc--CHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCcccC--HHHHHHHHHH
Confidence            46899999999999999999984  5699999986   234 44  6899999999999999999975  5689999999


Q ss_pred             hccccchhhHHhhc
Q 012294           96 SKFYNIESLLINSQ  109 (466)
Q Consensus        96 A~f~~l~~l~~~~~  109 (466)
                      |++|+|+.|.+.|.
T Consensus        98 A~~~~i~~L~~~C~  111 (116)
T 2vpk_A           98 ADYLKVEEVVTKCK  111 (116)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHH
Confidence            99999999999983

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.04  E-value=7.4e-11  Score=101.69  Aligned_cols=84  Identities=26%  Similarity=0.287  Sum_probs=74.5

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhcc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKF   98 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~f   98 (466)
                      -.||+|.|+|+.|.+||.+|+.+  ++||++||++  +.+ +.|.+|+.|+.+|+|+|||++.++  ..++.+|+..|++
T Consensus        28 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~--~~~~~~ll~~A~~  103 (121)
T 1buo_A           28 LCDVVIMVDSQEFHAHRTVLACT--SKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAK--AEDLDDLLYAAEI  103 (121)
T ss_dssp             TCCEEEEESSCEEEECHHHHHHH--CHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCC--GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCEEEehhHHHHhhc--CHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCCC--HHHHHHHHHHHHH
Confidence            46999999999999999999984  5699999987  234 668999999999999999999975  5788999999999


Q ss_pred             ccchhhHHhhc
Q 012294           99 YNIESLLINSQ  109 (466)
Q Consensus        99 ~~l~~l~~~~~  109 (466)
                      |+++.+.+.|.
T Consensus       104 ~~i~~L~~~c~  114 (121)
T 1buo_A          104 LEIEYLEEQCL  114 (121)
T ss_dssp             HTCHHHHHHHH
T ss_pred             HCCHHHHHHHH
Confidence            99999999983

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.02  E-value=1.3e-10  Score=100.69  Aligned_cols=85  Identities=20%  Similarity=0.281  Sum_probs=74.4

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--C---c-eeE--cCCchhHHHHhcccccCccccCCCCcChHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--T---H-RFI--DRDPELFSILLSLLRTGNLPSKAKAFDIEDL   92 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~---~-~fi--DRDp~~F~~IL~ylrtG~l~~~~~~~~~~~L   92 (466)
                      .-.+|+|.|+|+.|.+||.+|+.+  ++||++||.+  .   . +-+  |.+|+.|+.+|+|+|||++.++  ..++.+|
T Consensus        28 ~~~Dv~l~v~~~~~~aHk~iLaa~--S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~--~~~~~~l  103 (127)
T 1r29_A           28 ILTDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLR--EGNIMAV  103 (127)
T ss_dssp             CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCC--TTTHHHH
T ss_pred             CCCCEEEEECCEEEehHHHHHHHh--CHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcC--HHHHHHH
Confidence            356999999999999999999984  5699999985  1   2 544  8899999999999999999975  5789999


Q ss_pred             HHhhccccchhhHHhhc
Q 012294           93 IEESKFYNIESLLINSQ  109 (466)
Q Consensus        93 l~EA~f~~l~~l~~~~~  109 (466)
                      +..|++|+|+.|.+.|.
T Consensus       104 l~~A~~~~i~~L~~~c~  120 (127)
T 1r29_A          104 MATAMYLQMEHVVDTCR  120 (127)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            99999999999999983

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.01  E-value=1.8e-10  Score=101.60  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=73.4

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--C--c-eeE--cCCchhHHHHhcccccCccccCCCCcChHHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--T--H-RFI--DRDPELFSILLSLLRTGNLPSKAKAFDIEDLIE   94 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~--~-~fi--DRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~   94 (466)
                      -.||+|.|+|+.|.+||.+|+++  ++||++||.+  .  . +-+  +.+++.|+.+|+|+|||++.++  ..++.+|+.
T Consensus        36 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~--~~~v~~ll~  111 (138)
T 2z8h_A           36 LCDVTVLVEGQRFRAHRSVLAAC--SSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILS--KDNVDEVCR  111 (138)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCC--TTTHHHHHH
T ss_pred             CcCeEEEECCEEEechHHHHHHc--CHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccC--HHHHHHHHH
Confidence            46899999999999999999984  5599999986  2  2 433  7899999999999999999875  468999999


Q ss_pred             hhccccchhhHHhh
Q 012294           95 ESKFYNIESLLINS  108 (466)
Q Consensus        95 EA~f~~l~~l~~~~  108 (466)
                      .|++|+|..|.+.|
T Consensus       112 ~A~~~~i~~L~~~C  125 (138)
T 2z8h_A          112 CVEFLSVHNIEESC  125 (138)
T ss_dssp             HHHHHTCGGGHHHH
T ss_pred             HHHHhCCHHHHHHH
Confidence            99999999999999

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.00  E-value=9e-11  Score=100.99  Aligned_cols=84  Identities=15%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-C-ce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhcc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-T-HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKF   98 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~f   98 (466)
                      -.||+|.|+|+.|.+||.+|+.+  ++||++||++ + .+ +-+.+++.|+.+|+|+|||++.++  ..++.+|+..|++
T Consensus        27 ~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~--~~~~~~ll~~A~~  102 (119)
T 2q81_A           27 LCDCTFVVDGVHFKAHKAVLAAC--SEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLS--PENVDDVLAVATF  102 (119)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCCCCC--TTTHHHHHHHHHH
T ss_pred             CcceEEEECCEEEehhHHHHHHc--CHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCCccC--HHHHHHHHHHHHH
Confidence            46899999999999999999984  5599999986 2 24 445689999999999999999975  4689999999999


Q ss_pred             ccchhhHHhhc
Q 012294           99 YNIESLLINSQ  109 (466)
Q Consensus        99 ~~l~~l~~~~~  109 (466)
                      |+|+.+.+.|.
T Consensus       103 l~i~~L~~~C~  113 (119)
T 2q81_A          103 LQMQDIITACH  113 (119)
T ss_dssp             TTCHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            99999999983

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.98  E-value=1.7e-10  Score=98.96  Aligned_cols=85  Identities=20%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------Cc-e-eEcCCchhHHHHhcccccCccccCCCCcChHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------TH-R-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDL   92 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~~-~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~L   92 (466)
                      .-.+|+|.|||+.|.+||.+|+.+  ++||++||++      .. + +-|.+|+.|+.+|+|+|||++.++  ..++..|
T Consensus        24 ~~~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~--~~~~~~l   99 (120)
T 2if5_A           24 LLCDVVILVEGREFPTHRSVLAAC--SQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVS--TANVGDI   99 (120)
T ss_dssp             CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCC--GGGHHHH
T ss_pred             CCCCeEEEECCEEEeHHHHHHHHh--CHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccC--HHHHHHH
Confidence            356999999999999999999984  5699999975      12 3 557899999999999999999875  4688999


Q ss_pred             HHhhccccchhhHHhhc
Q 012294           93 IEESKFYNIESLLINSQ  109 (466)
Q Consensus        93 l~EA~f~~l~~l~~~~~  109 (466)
                      +..|++|+|+.+.+.|.
T Consensus       100 l~~A~~~~i~~L~~~C~  116 (120)
T 2if5_A          100 LSAARLLEIPAVSHVCA  116 (120)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            99999999999999983

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=98.98  E-value=1.1e-10  Score=100.99  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=73.6

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--C---ce-eEc-CCchhHHHHhcccccCccccCCCCcChHHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--T---HR-FID-RDPELFSILLSLLRTGNLPSKAKAFDIEDLIE   94 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~---~~-fiD-RDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~   94 (466)
                      -.||+|.|+|+.|.+||.+|+++  ++||++||.+  .   .+ +.| .+++.|+.+|+|+|||++.++  ..++.+|+.
T Consensus        32 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~--~~~v~~ll~  107 (125)
T 3ohu_A           32 LCDVTLIVERKEFRAHRAVLAAC--SEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLS--RENIREVIR  107 (125)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEEC--TTTHHHHHH
T ss_pred             ccceEEEECCEEEechHHHHHHc--CHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEEC--HHHHHHHHH
Confidence            46899999999999999999984  5699999986  2   24 446 899999999999999999985  578999999


Q ss_pred             hhccccchhhHHhhc
Q 012294           95 ESKFYNIESLLINSQ  109 (466)
Q Consensus        95 EA~f~~l~~l~~~~~  109 (466)
                      .|++|+|..|.+.|.
T Consensus       108 ~A~~l~i~~L~~~C~  122 (125)
T 3ohu_A          108 CAEFLRMHNLEDSCF  122 (125)
T ss_dssp             HHHHHTBSSCTTSSC
T ss_pred             HHHHhCCHHHHHHHH
Confidence            999999999998884

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=98.98  E-value=3.4e-10  Score=97.89  Aligned_cols=82  Identities=20%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCCCce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhcccc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYN  100 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~f~~  100 (466)
                      -.||+|.|||+.|.+||.+|+.  .++||++.  .+.+ +-|.+|+.|+.+|+|+|||++.+.  ..+++.|+..|++|+
T Consensus        30 ~~Dv~l~v~~~~f~aHk~vLaa--~S~yF~~~--~~~i~l~~v~~~~f~~ll~fiYtg~~~i~--~~~v~~ll~aA~~l~  103 (119)
T 3m5b_A           30 LCDTLITVGSQEFPAHSLVLAG--VSQQLGRR--GQWALGEGISPSTFAQLLNFVYGESVELQ--PGELRPLQEAARALG  103 (119)
T ss_dssp             TCCEEEEETTEEEEECHHHHHT--TCGGGCCC--EEEECCSSCCHHHHHHHHHHHTTCCEEEC--GGGHHHHHHHHHHTT
T ss_pred             CcceEEEECCEEEeeEHHHHHH--cCHHHhcC--CCEEEeCCCCHHHHHHHHHHHcCCCcCcC--HHHHHHHHHHHHHhC
Confidence            4689999999999999999998  45699862  1233 567999999999999999999985  578999999999999


Q ss_pred             chhhHHhhc
Q 012294          101 IESLLINSQ  109 (466)
Q Consensus       101 l~~l~~~~~  109 (466)
                      |..+.+.|.
T Consensus       104 i~~l~~~C~  112 (119)
T 3m5b_A          104 VQSLEEACW  112 (119)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999999993

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=98.97  E-value=1.1e-10  Score=101.06  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=73.5

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--C--c-eeE--cCCchhHHHHhcccccCccccCCCCcChHHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--T--H-RFI--DRDPELFSILLSLLRTGNLPSKAKAFDIEDLIE   94 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~--~-~fi--DRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~   94 (466)
                      -.||+|.|||+.|.+||.+|+++  ++||++||.+  .  . +-+  +.+++.|+.+|+|+|||++.++  ..++.+|+.
T Consensus        29 ~~Dv~l~v~~~~~~aHk~vLaa~--S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~--~~~v~~ll~  104 (124)
T 2ihc_A           29 LCDVTIFVEGQRFRAHRSVLAAC--SSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILS--KENVDEVCK  104 (124)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--BHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEE--TTTHHHHHH
T ss_pred             CcCEEEEECCEEEecHHHHHHHc--CHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccC--HHHHHHHHH
Confidence            46899999999999999999984  5599999986  1  2 433  7899999999999999999875  468999999


Q ss_pred             hhccccchhhHHhhc
Q 012294           95 ESKFYNIESLLINSQ  109 (466)
Q Consensus        95 EA~f~~l~~l~~~~~  109 (466)
                      .|.+|+++.+.+.|.
T Consensus       105 ~A~~~~~~~L~~~C~  119 (124)
T 2ihc_A          105 CVEFLSVHNIEESCF  119 (124)
T ss_dssp             HHHHHTBSSCCGGGG
T ss_pred             HHHHHCCHHHHHHHH
Confidence            999999999999984

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.96  E-value=9.3e-11  Score=102.20  Aligned_cols=84  Identities=23%  Similarity=0.316  Sum_probs=72.8

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---CceeE--cCCchhHHHHhcccccCccccCCCCcChHHHHHhh
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---THRFI--DRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEES   96 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---~~~fi--DRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA   96 (466)
                      -.||+|.|||+.|.+||.+|+.+  ++||++||.+   ..+.+  |.+++.|+.+|+|+|||++.++  ..++..|+..|
T Consensus        33 ~~Dv~l~v~~~~~~~Hk~vLaa~--S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~--~~~~~~ll~~A  108 (129)
T 3ga1_A           33 YCDVSVVVKGHAFKAHRAVLAAS--SSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMN--VGDQDLLMYTA  108 (129)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--BHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECC--TTTHHHHHHHH
T ss_pred             CcceEEEECCEEEEehHHHHHHc--CHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccC--HHHHHHHHHHH
Confidence            46899999999999999999984  5699999985   23545  7999999999999999999985  46899999999


Q ss_pred             ccccchhhHHhhc
Q 012294           97 KFYNIESLLINSQ  109 (466)
Q Consensus        97 ~f~~l~~l~~~~~  109 (466)
                      ++|+|..+.+.|.
T Consensus       109 ~~~~i~~l~~~C~  121 (129)
T 3ga1_A          109 GFLQIQEIMEKGT  121 (129)
T ss_dssp             HHTTBTTSSCC--
T ss_pred             HHhCCHHHHHHHH
Confidence            9999999999884

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.93  E-value=5.6e-10  Score=93.84  Aligned_cols=85  Identities=20%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             CCCeEEEEECC----eEEEEeHHHhhccCCCCccccccCC-----Cc-e-eEcCCchhHHHHhcccccCccccCCCCcCh
Q 012294           21 DSNIVTIDVGG----QIFQTTKQTLALAGPKSLLSKLADS-----TH-R-FIDRDPELFSILLSLLRTGNLPSKAKAFDI   89 (466)
Q Consensus        21 ~~~~V~LnVGG----~~F~t~~~tL~~~~p~s~f~~mf~~-----~~-~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~   89 (466)
                      .-.||+|.|||    +.|.+||.+|+.+  ++||++||++     .. + +.|.+|+.|+.+|+|+|||++.++  ..++
T Consensus         7 ~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~--S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~--~~~~   82 (109)
T 2vkp_A            7 LMADVHFVVGPPGATRTVPAHKYVLAVG--SSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLE--ADTV   82 (109)
T ss_dssp             TTCCEEEEESSTTSCEEEEECHHHHHHH--CHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCC--TTTH
T ss_pred             CcccEEEEECCCCCcEEEEeeHHHHHHc--CHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCC--HHHH
Confidence            35699999999    9999999999984  4599999986     12 4 458899999999999999999875  4788


Q ss_pred             HHHHHhhccccchhhHHhhc
Q 012294           90 EDLIEESKFYNIESLLINSQ  109 (466)
Q Consensus        90 ~~Ll~EA~f~~l~~l~~~~~  109 (466)
                      ..|+..|++|+++.|.+.|.
T Consensus        83 ~~ll~~A~~~~~~~L~~~c~  102 (109)
T 2vkp_A           83 LATLYAAKKYIVPALAKACV  102 (109)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999983

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=100.65  Aligned_cols=84  Identities=13%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------C-ce-eEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------T-HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIED   91 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~   91 (466)
                      -.||+|.|+|+.|.+||.+|+++  ++||++||.+        . .+ +-|.+++.|+.+|+|+|||++.++  ..++.+
T Consensus        47 ~~Dv~l~v~~~~f~aHk~vLaa~--S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~--~~~v~~  122 (144)
T 2ppi_A           47 FCDAHLVLDGEEIPVQKNILAAA--SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN--EDTIQD  122 (144)
T ss_dssp             CCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCC--TTTHHH
T ss_pred             CcceEEEECCEEEehHHHHHHHc--CHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCC--HHHHHH
Confidence            45899999999999999999984  5599999963        1 24 557899999999999999999875  578999


Q ss_pred             HHHhhccccchhhHHhhc
Q 012294           92 LIEESKFYNIESLLINSQ  109 (466)
Q Consensus        92 Ll~EA~f~~l~~l~~~~~  109 (466)
                      |+..|.+|+|..|.+.|.
T Consensus       123 ll~~A~~l~i~~L~~~C~  140 (144)
T 2ppi_A          123 VVQAADLLLLTDLKTLCC  140 (144)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHH
Confidence            999999999999999984

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=98.88  E-value=6.2e-10  Score=95.54  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-C-ce-eEcCCchhHHHHhcccccCcc-ccCCCCcChHHHHHhhc
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-T-HR-FIDRDPELFSILLSLLRTGNL-PSKAKAFDIEDLIEESK   97 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-~-~~-fiDRDp~~F~~IL~ylrtG~l-~~~~~~~~~~~Ll~EA~   97 (466)
                      -.+|+|.|||+.|.+||.+|+.+  ++||++||.+ . .+ +-|.+|+.|+.+|+|+|||++ .++  ..++.+|+..|+
T Consensus        31 ~~Dv~l~v~~~~f~aHk~vLaa~--S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~--~~~~~~ll~~A~  106 (116)
T 3fkc_A           31 FCDVTVIVEDRKFRAHKNILSAS--STYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVR--SDLLDELIKSGQ  106 (116)
T ss_dssp             TCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCC--HHHHHHHHHHHH
T ss_pred             ceeEEEEECCEEEehhHHHHHHc--CHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCC--HHHHHHHHHHHH
Confidence            45899999999999999999984  5699999987 3 34 568999999999999999999 453  567899999999


Q ss_pred             cccchhhHH
Q 012294           98 FYNIESLLI  106 (466)
Q Consensus        98 f~~l~~l~~  106 (466)
                      +|+|..|.+
T Consensus       107 ~l~i~~L~~  115 (116)
T 3fkc_A          107 LLGVKFIAA  115 (116)
T ss_dssp             HHTCHHHHT
T ss_pred             HhCccccCc
Confidence            999998864

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=96.56  Aligned_cols=85  Identities=25%  Similarity=0.380  Sum_probs=74.3

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDL   92 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~L   92 (466)
                      .-.+|+|.|||+.|.+||.+|+.+  ++||++||++       ..+ +.|.+++.|+.+|+|+|+|++.++  ..++..|
T Consensus        24 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~--~~~~~~l   99 (145)
T 4eoz_A           24 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL--DKMADDL   99 (145)
T ss_dssp             CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTG--GGTHHHH
T ss_pred             CCcceEEEECCEEEEeehHHHHHc--CHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCc--HHHHHHH
Confidence            356899999999999999999984  5699999985       124 568999999999999999999864  5688999


Q ss_pred             HHhhccccchhhHHhhc
Q 012294           93 IEESKFYNIESLLINSQ  109 (466)
Q Consensus        93 l~EA~f~~l~~l~~~~~  109 (466)
                      +..|.+|+++.+.+.|.
T Consensus       100 l~~A~~~~~~~l~~~c~  116 (145)
T 4eoz_A          100 LAAADKYALERLKVMCE  116 (145)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHH
Confidence            99999999999999993

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.82  E-value=2.6e-09  Score=103.28  Aligned_cols=92  Identities=10%  Similarity=0.089  Sum_probs=76.5

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--C-------ce-eEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--T-------HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIE   90 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~-------~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~   90 (466)
                      .-.||+|.|||+.|.+||.+|+.  .++||++||++  .       .+ +.|.+|+.|+.||+|+|||++.++  ..++.
T Consensus        30 ~~~Dv~l~v~~~~f~~Hr~vLaa--~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~--~~~v~  105 (256)
T 3hve_A           30 RFCDAHLVLDGEEIPVQKNILAA--ASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN--EDTIQ  105 (256)
T ss_dssp             CCCCEEEEETTEEEEECHHHHHT--TCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC---CCHH
T ss_pred             CCcceEEEECCEEEechHHHHHH--cCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCccc--HhHHH
Confidence            35699999999999999999998  45699999974  1       24 558899999999999999999875  57899


Q ss_pred             HHHHhhccccchhhHHhh------cCCCCCCc
Q 012294           91 DLIEESKFYNIESLLINS------QSNPSQFD  116 (466)
Q Consensus        91 ~Ll~EA~f~~l~~l~~~~------~~~p~~~~  116 (466)
                      .|+..|.+|++..+.+.|      .++++++.
T Consensus       106 ~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~  137 (256)
T 3hve_A          106 DVVQAADLLLLTDLKTLCCEFLEGCIAAENCI  137 (256)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTH
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHhhCCHhhHH
Confidence            999999999999999998      35565554

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.81  E-value=1.5e-09  Score=98.22  Aligned_cols=84  Identities=25%  Similarity=0.376  Sum_probs=73.8

Q ss_pred             CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C-ce-eEcCCchhHHHHhcccccCccccCCCCcChHHH
Q 012294           21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T-HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDL   92 (466)
Q Consensus        21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~L   92 (466)
                      .-.+|+|.|+|+.|.+||.+|+.+  ++||++||.+      + .+ +.|.+|+.|+.+|+|+|+|++.++  ..++..|
T Consensus        33 ~~~Dv~l~v~~~~~~~Hk~iL~~~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~--~~~~~~l  108 (172)
T 3htm_A           33 RFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL--DKMADDL  108 (172)
T ss_dssp             CSCCEEEEETTEEEEECHHHHHHH--CHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTG--GGTHHHH
T ss_pred             CCcceEEEECCEEEEeeHHHHHHc--CHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCc--HHHHHHH
Confidence            356899999999999999999984  5699999985      1 24 568999999999999999999864  5688999


Q ss_pred             HHhhccccchhhHHhh
Q 012294           93 IEESKFYNIESLLINS  108 (466)
Q Consensus        93 l~EA~f~~l~~l~~~~  108 (466)
                      +..|.+|+++.+.+.|
T Consensus       109 l~~A~~~~~~~l~~~c  124 (172)
T 3htm_A          109 LAAADKYALERLKVMC  124 (172)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHH
Confidence            9999999999999998

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.77  E-value=4e-09  Score=103.38  Aligned_cols=91  Identities=15%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             CCeEEEEEC---CeEEEEeHHHhhccCCCCccccccCC------C-ceeE-------cCCchhHHHHhcccccCccccCC
Q 012294           22 SNIVTIDVG---GQIFQTTKQTLALAGPKSLLSKLADS------T-HRFI-------DRDPELFSILLSLLRTGNLPSKA   84 (466)
Q Consensus        22 ~~~V~LnVG---G~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~fi-------DRDp~~F~~IL~ylrtG~l~~~~   84 (466)
                      -.+|+|.||   |+.|.+||.+|+.+  ++||++||++      + .+-+       +.+|+.|+.+|+|+|||++.++ 
T Consensus        32 ~~Dv~l~v~~~~~~~f~~Hr~vLaa~--S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~-  108 (279)
T 3i3n_A           32 FCDITLCFGGAGGREFRAHRSVLAAA--TEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVS-  108 (279)
T ss_dssp             TCCEEEECC----CEEEECHHHHHHH--CTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEE-
T ss_pred             CCCeEEEEcCCCCeEEehHHHHHHHc--CHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccC-
Confidence            468999999   99999999999984  5599999986      1 2433       7899999999999999999985 


Q ss_pred             CCcChHHHHHhhccccchhhHHhh------cCCCCCCc
Q 012294           85 KAFDIEDLIEESKFYNIESLLINS------QSNPSQFD  116 (466)
Q Consensus        85 ~~~~~~~Ll~EA~f~~l~~l~~~~------~~~p~~~~  116 (466)
                       ..++..|+..|.+|++..+.+.|      .++++++.
T Consensus       109 -~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~  145 (279)
T 3i3n_A          109 -TGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCV  145 (279)
T ss_dssp             -TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHH
T ss_pred             -HHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHH
Confidence             46899999999999999999998      34565544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.57  E-value=5.6e-06  Score=82.63  Aligned_cols=234  Identities=12%  Similarity=0.086  Sum_probs=142.1

Q ss_pred             eeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCC--C---CCceeEEEEE-CCeEEE-EecCCCcCCCee
Q 012294          172 AVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR--S---SSTVQAIGSS-DKHLFV-SFESGRRNSNSI  244 (466)
Q Consensus       172 ~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~--M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sV  244 (466)
                      .+.++++..+..++.|+  .+|     ++..||..+.+-.....  +   ...+-+++.. ++...+ |+.     ..+|
T Consensus        84 ~v~~~~~s~d~~l~~~s--~dg-----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i  151 (344)
T 4gqb_B           84 GVADLTWVGERGILVAS--DSG-----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICI  151 (344)
T ss_dssp             CEEEEEEETTTEEEEEE--TTS-----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCE
T ss_pred             CEEEEEEeCCCeEEEEE--CCC-----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeE
Confidence            46677788888788888  665     35667766654221111  1   2234445555 345555 665     3578


Q ss_pred             EEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--ccc
Q 012294          245 MVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--VDC  322 (466)
Q Consensus       245 E~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--~d~  322 (466)
                      -.||..+.+++..+..     +..    ....+.|.+-+..++++|+.|+      +|.+||.++++++-+...+  ...
T Consensus       152 ~iwd~~~~~~~~~~~~-----h~~----~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~  216 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRA-----HAA----QVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCSAPGYL  216 (344)
T ss_dssp             EEEETTTTEEEEEECC-----CSS----CEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC----CCC
T ss_pred             EEEECCCCcEEEEEcC-----cCC----ceEEEEecCCCCCceeeecccc------ccccccccccceeeeeecceeecc
Confidence            9999999554444321     011    1233455555667888888554      7999999999987666433  333


Q ss_pred             ccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEE--EeCCeEEE
Q 012294          323 FSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFC--GKGGEIEL  398 (466)
Q Consensus       323 ~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~--~~~~~~~v  398 (466)
                      ...+...+++..++..|..+|.|.+-|+++...      +..    +.. ... .=..|+..  +.++++  +.++.|.|
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~------~~~----~~~-h~~-~v~~v~fsp~g~~~lasgs~D~~i~v  284 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC------VLS----SAV-HSQ-CVTGLVFSPHSVPFLASLSEDCSLAV  284 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--C------CEE----EEC-CSS-CEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcE------EEE----EcC-CCC-CEEEEEEccCCCeEEEEEeCCCeEEE
Confidence            455667788888898999999999999987542      111    111 011 11233333  335444  47789999


Q ss_pred             eEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccCCC
Q 012294          399 WSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~~  464 (466)
                      |.--             +..+++  +.+     ..+.|++++|  -|.+|+++=.+-..|-+|.-+..
T Consensus       285 wd~~-------------~~~~~~--~~~-----H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          285 LDSS-------------LSELFR--SQA-----HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ECTT-------------CCEEEE--ECC-----CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EECC-------------CCcEEE--EcC-----CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9531             112333  223     3567999998  47789998887788899976543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.55  E-value=9.5e-06  Score=80.06  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=135.5

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC--CeEEEEecCCCcCCCeeEEEecCCCCcccccc
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD--KHLFVSFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~--~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      .||+.++  .++     .+..+|..+.+-...-+......+++...  ..||+++..    .+.|.+||+.+.+.+..+.
T Consensus        45 ~l~~~~~--~d~-----~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~~~~~~~~~  113 (391)
T 1l0q_A           45 KVYVANA--HSN-----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSNTVAGTVK  113 (391)
T ss_dssp             EEEEEEG--GGT-----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEE
T ss_pred             EEEEECC--CCC-----eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC----CCEEEEEECCCCeEEEEEe
Confidence            3667776  333     45667877665433222222333355553  358874321    3679999999954443333


Q ss_pred             ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEE
Q 012294          260 QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVG  339 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~  339 (466)
                      ...          .+..+.|.+-+..||+++..      .+.|.+||.+++++++....+. ....+.+++++..||..+
T Consensus       114 ~~~----------~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          114 TGK----------SPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             CSS----------SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred             CCC----------CcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEe
Confidence            211          13345566666778888763      3489999999999988876553 336788899999999888


Q ss_pred             EeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE--ECCEEEEEe----CCeEEEeEeeeecCCCCCCCC
Q 012294          340 INSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC--HANQVFCGK----GGEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       340 ~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~~lf~~~----~~~~~v~~~~~~~~~~~~~~~  413 (466)
                      ..+|.|++.|++....      +..    ...  .. .-..++.  -+.+||++.    ++.|.+|.--    ..     
T Consensus       177 ~~~~~v~~~d~~~~~~------~~~----~~~--~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~----~~-----  234 (391)
T 1l0q_A          177 FDSMSISVIDTVTNSV------IDT----VKV--EA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG----TN-----  234 (391)
T ss_dssp             TTTTEEEEEETTTTEE------EEE----EEC--SS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETT----TT-----
T ss_pred             CCCCEEEEEECCCCeE------EEE----Eec--CC-CccceEECCCCCEEEEEecCcCCCcEEEEECC----CC-----
Confidence            8999999999987431      111    110  11 1112233  245777774    6889999742    11     


Q ss_pred             CcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          414 PLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       414 ~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                          +..+. +      ..+..+..+++-  |.+||++-.+...|.||+...
T Consensus       235 ----~~~~~-~------~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          235 ----KITAR-I------PVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ----EEEEE-E------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ----eEEEE-E------ecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence                11111 0      012346777766  788999977778999998653

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=98.54  E-value=2.4e-08  Score=99.16  Aligned_cols=85  Identities=25%  Similarity=0.365  Sum_probs=74.2

Q ss_pred             CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C-ce-eEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294           20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T-HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIED   91 (466)
Q Consensus        20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~   91 (466)
                      ..-.+|+|.|+|+.|.+||.+|+++  ++||.+||.+      . .+ +-|.+|+.|+.+|+|+|+|++.+.  ..++..
T Consensus       172 ~~~~Dv~l~v~~~~f~~Hk~vLaa~--S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~--~~~~~~  247 (312)
T 3hqi_A          172 SRFTDCCLCVAGQEFQAHKAILAAR--SPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL--DKMADD  247 (312)
T ss_dssp             TCSCCEEEEETTEEEEECHHHHHHH--CHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTH--HHHHHH
T ss_pred             CCCCceEEEECCEEEeHHHHHHHHc--CHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCCh--HHHHHH
Confidence            3457999999999999999999984  5699999985      1 24 668999999999999999999864  467899


Q ss_pred             HHHhhccccchhhHHhh
Q 012294           92 LIEESKFYNIESLLINS  108 (466)
Q Consensus        92 Ll~EA~f~~l~~l~~~~  108 (466)
                      |+..|++|+++.|...|
T Consensus       248 ll~~A~~~~~~~l~~~c  264 (312)
T 3hqi_A          248 LLAAADKYALERLKVMC  264 (312)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHH
Confidence            99999999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.53  E-value=7.6e-05  Score=75.55  Aligned_cols=260  Identities=16%  Similarity=0.206  Sum_probs=150.6

Q ss_pred             cCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-
Q 012294          141 NYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-  216 (466)
Q Consensus       141 ~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-  216 (466)
                      +++...++++  |.+..||... ....+...+-+.+.++.+ ++.+++.|+  .+|     ++..||..+.+-...-.. 
T Consensus       127 ~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~~--~dg-----~i~vwd~~~~~~~~~~~~h  198 (445)
T 2ovr_B          127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM-RDNIIISGS--TDR-----TLKVWNAETGECIHTLYGH  198 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE-ETTEEEEEE--TTS-----CEEEEETTTTEEEEEECCC
T ss_pred             EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEe-cCCEEEEEe--CCC-----eEEEEECCcCcEEEEECCC
Confidence            3455443433  4556666433 222222223334444444 577788888  665     355666665542221111 


Q ss_pred             CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC
Q 012294          217 SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS  296 (466)
Q Consensus       217 r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~  296 (466)
                      ...+.+++..++.|++|+.     ..+|..||..+.+++..+...     .       .....+..++.++++|+.||  
T Consensus       199 ~~~v~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~-----~-------~~v~~~~~~~~~l~~~~~dg--  259 (445)
T 2ovr_B          199 TSTVRCMHLHEKRVVSGSR-----DATLRVWDIETGQCLHVLMGH-----V-------AAVRCVQYDGRRVVSGAYDF--  259 (445)
T ss_dssp             SSCEEEEEEETTEEEEEET-----TSEEEEEESSSCCEEEEEECC-----S-------SCEEEEEECSSCEEEEETTS--
T ss_pred             CCcEEEEEecCCEEEEEeC-----CCEEEEEECCCCcEEEEEcCC-----c-------ccEEEEEECCCEEEEEcCCC--
Confidence            3344445666666666665     357899999984433332210     1       11122233777788888544  


Q ss_pred             cccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc
Q 012294          297 KVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG  376 (466)
Q Consensus       297 ~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~  376 (466)
                          +|.+||.++++++.+...+......+..  ++. .+.+|+.+|.+.+-|+++...      +..    +..  ...
T Consensus       260 ----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~------~~~----~~~--~~~  320 (445)
T 2ovr_B          260 ----MVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNC------IHT----LTG--HQS  320 (445)
T ss_dssp             ----CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCE------EEE----ECC--CCS
T ss_pred             ----EEEEEECCCCcEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCE------EEE----EcC--Ccc
Confidence                7999999999999999888666666555  444 455888999999999988441      111    111  111


Q ss_pred             ceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccce
Q 012294          377 FGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQT  455 (466)
Q Consensus       377 ~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~  455 (466)
                      .-..++..++.|+++ .++.|.+|.--    ..        +.+ + .+-+  .....+.|+.+++.|+.|+.. .+...
T Consensus       321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~----~~--------~~~-~-~~~~--~~~~~~~v~~~~~~~~~l~s~-~~dg~  383 (445)
T 2ovr_B          321 LTSGMELKDNILVSGNADSTVKIWDIK----TG--------QCL-Q-TLQG--PNKHQSAVTCLQFNKNFVITS-SDDGT  383 (445)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETT----TC--------CEE-E-EECS--TTSCSSCEEEEEECSSEEEEE-ETTSE
T ss_pred             cEEEEEEeCCEEEEEeCCCeEEEEECC----CC--------cEE-E-EEcc--CCCCCCCEEEEEECCCEEEEE-eCCCe
Confidence            333455667777766 57789999742    11        111 1 1111  112456899999987665555 55578


Q ss_pred             EEEeccCC
Q 012294          456 VEVWQSSS  463 (466)
Q Consensus       456 ~~vw~~~~  463 (466)
                      |-||+...
T Consensus       384 v~iwd~~~  391 (445)
T 2ovr_B          384 VKLWDLKT  391 (445)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.51  E-value=3.4e-05  Score=78.21  Aligned_cols=269  Identities=15%  Similarity=0.170  Sum_probs=146.9

Q ss_pred             ecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      ..++...++++  |.+..||... ....+...+-+.+.++.+ ++.+++.|+  .+|.     +..||..+.+-...-.-
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~--~dg~-----i~vwd~~~~~~~~~~~~  211 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGS--SDST-----VRVWDVNTGEMLNTLIH  211 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEE--TTSC-----EEEEESSSCCEEEEECC
T ss_pred             EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEc--CCCe-----EEEEECCCCcEEEEEcC
Confidence            34565553433  4456666332 222222233344555555 888999998  6653     55666665543221111


Q ss_pred             -CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          217 -SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       217 -r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                       ...+.+++..++.|++|+.     ..+|-.||..+.+.+....   .+.+.      ...+..+..++..+++|+.|  
T Consensus       212 h~~~v~~l~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~---~~~~~------~~~v~~~~~~~~~l~s~~~d--  275 (435)
T 1p22_A          212 HCEAVLHLRFNNGMMVTCSK-----DRSIAVWDMASPTDITLRR---VLVGH------RAAVNVVDFDDKYIVSASGD--  275 (435)
T ss_dssp             CCSCEEEEECCTTEEEEEET-----TSCEEEEECSSSSCCEEEE---EECCC------SSCEEEEEEETTEEEEEETT--
T ss_pred             CCCcEEEEEEcCCEEEEeeC-----CCcEEEEeCCCCCCceeee---EecCC------CCcEEEEEeCCCEEEEEeCC--
Confidence             3344445555565655665     3578999998833221100   01000      01111222256666777744  


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                          ++|.+||.++++++.+...+......+..  + +.++.+|+.+|.|.+-|+++...      +..    +..  ..
T Consensus       276 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~g~~dg~i~iwd~~~~~~------~~~----~~~--h~  336 (435)
T 1p22_A          276 ----RTIKVWNTSTCEFVRTLNGHKRGIACLQY--R-DRLVVSGSSDNTIRLWDIECGAC------LRV----LEG--HE  336 (435)
T ss_dssp             ----SEEEEEETTTCCEEEEEECCSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTCCE------EEE----ECC--CS
T ss_pred             ----CeEEEEECCcCcEEEEEcCCCCcEEEEEe--C-CCEEEEEeCCCeEEEEECCCCCE------EEE----EeC--Cc
Confidence                48999999999999999888766665555  3 34566888999999999987431      221    111  11


Q ss_pred             cceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccc
Q 012294          376 GFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQ  454 (466)
Q Consensus       376 ~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~  454 (466)
                      +.-..++..++.|+++ .++.|.||.--......     .......-+.+.     ...+.|..+++.|++| ++=.+..
T Consensus       337 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~-----~h~~~v~~l~~~~~~l-~s~s~Dg  405 (435)
T 1p22_A          337 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-----APAGTLCLRTLV-----EHSGRVFRLQFDEFQI-VSSSHDD  405 (435)
T ss_dssp             SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-----SCTTTTEEEEEC-----CCSSCCCCEEECSSCE-EECCSSS
T ss_pred             CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-----ccccchheeecc-----CCCCCeEEEEeCCCEE-EEEeCCC
Confidence            1222344444455544 57789999853111111     000000111122     2456799999976654 5556667


Q ss_pred             eEEEeccC
Q 012294          455 TVEVWQSS  462 (466)
Q Consensus       455 ~~~vw~~~  462 (466)
                      .|-||+-.
T Consensus       406 ~i~iwd~~  413 (435)
T 1p22_A          406 TILIWDFL  413 (435)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEECC
Confidence            89999854

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.46  E-value=8.1e-05  Score=74.16  Aligned_cols=199  Identities=15%  Similarity=0.157  Sum_probs=126.3

Q ss_pred             ceeEEEEECCe-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCc
Q 012294          219 TVQAIGSSDKH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISK  297 (466)
Q Consensus       219 ~~~Ava~l~~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~  297 (466)
                      .+.+++..++. |.+|+.     ..+|..||..+.+......... .++..    +...+.|.+ ++.++++|+.||   
T Consensus        84 ~v~~~~~s~d~~l~~~s~-----dg~v~lWd~~~~~~~~~~~~~~-~~H~~----~V~~v~~sp-dg~~l~sgs~d~---  149 (344)
T 4gqb_B           84 GVADLTWVGERGILVASD-----SGAVELWELDENETLIVSKFCK-YEHDD----IVSTVSVLS-SGTQAVSGSKDI---  149 (344)
T ss_dssp             CEEEEEEETTTEEEEEET-----TSEEEEEEECTTSSCEEEEEEE-ECCSS----CEEEEEECT-TSSEEEEEETTS---
T ss_pred             CEEEEEEeCCCeEEEEEC-----CCEEEEEeccCCCceeEeeccc-cCCCC----CEEEEEECC-CCCEEEEEeCCC---
Confidence            34456666654 444655     3579999999843332221100 01111    123344544 667778888554   


Q ss_pred             ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccc
Q 012294          298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF  377 (466)
Q Consensus       298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~  377 (466)
                         +|.+||.++++++.++.+|.+.+..+.+..++..++..|+.+|.|.+-|+++...   -..+..     .  .....
T Consensus       150 ---~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~-----~--~~~~~  216 (344)
T 4gqb_B          150 ---CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGC-----S--APGYL  216 (344)
T ss_dssp             ---CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC-----------CCC
T ss_pred             ---eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce---eeeeec-----c--eeecc
Confidence               7999999999999999999888888899999999998999999999999987542   011111     0  01111


Q ss_pred             eeEEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEee
Q 012294          378 GCKIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRK  451 (466)
Q Consensus       378 ~~~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~  451 (466)
                      -..++.+  +++++++  .++.|.+|.--     .   +..+     + .+-+     ..+.|+.++|-  |.+++++=.
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-----~---~~~~-----~-~~~~-----h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTK-----S---TSCV-----L-SSAV-----HSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESC-----C-----CC-----E-EEEC-----CSSCEEEEEECSSSSCCEEEEE
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECC-----C---CcEE-----E-EEcC-----CCCCEEEEEEccCCCeEEEEEe
Confidence            1233333  5677764  67889999642     1   1111     1 1222     35679999995  668888888


Q ss_pred             ccceEEEeccCC
Q 012294          452 GQQTVEVWQSSS  463 (466)
Q Consensus       452 ~~~~~~vw~~~~  463 (466)
                      +...|-||+...
T Consensus       278 ~D~~i~vwd~~~  289 (344)
T 4gqb_B          278 EDCSLAVLDSSL  289 (344)
T ss_dssp             TTSCEEEECTTC
T ss_pred             CCCeEEEEECCC
Confidence            888999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.41  E-value=0.00029  Score=71.22  Aligned_cols=185  Identities=11%  Similarity=0.202  Sum_probs=115.6

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI  302 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV  302 (466)
                      +...++.|++|+.     ...|..||..+.+++..+....         .....+.|.+ ++..+++|+.|      ++|
T Consensus       276 ~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~sg~~d------g~i  334 (464)
T 3v7d_B          276 VSGHGNIVVSGSY-----DNTLIVWDVAQMKCLYILSGHT---------DRIYSTIYDH-ERKRCISASMD------TTI  334 (464)
T ss_dssp             EEEETTEEEEEET-----TSCEEEEETTTTEEEEEECCCS---------SCEEEEEEET-TTTEEEEEETT------SCE
T ss_pred             EcCCCCEEEEEeC-----CCeEEEEECCCCcEEEEecCCC---------CCEEEEEEcC-CCCEEEEEeCC------CcE
Confidence            3333445555665     3468999999855544432211         1123445554 45556677744      479


Q ss_pred             EEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEE
Q 012294          303 KFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIE  382 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~  382 (466)
                      .+||.++++++.++..|......+..+  + ..+..|+.+|.|.+-|+++...  .+. ...        ........+.
T Consensus       335 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~--~~~-~~~--------~~~~~~~~~~  400 (464)
T 3v7d_B          335 RIWDLENGELMYTLQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSR--KFS-YHH--------TNLSAITTFY  400 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE--EEE-EEC--------TTCCCEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCce--eee-ecC--------CCCccEEEEE
Confidence            999999999999999887666666655  3 4556888999999999987542  111 111        0110333444


Q ss_pred             EECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccc--eEEEec
Q 012294          383 CHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQ--TVEVWQ  460 (466)
Q Consensus       383 ~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~--~~~vw~  460 (466)
                      ..+..|.++.++.|.||.--             +.++.++.+.+     ..+.|.++++=|++|+++=.+..  .+++|+
T Consensus       401 ~~~~~l~~~~dg~i~iwd~~-------------~g~~~~~~~~~-----~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          401 VSDNILVSGSENQFNIYNLR-------------SGKLVHANILK-----DADQIWSVNFKGKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             ECSSEEEEEETTEEEEEETT-------------TCCEEESCTTT-----TCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             eCCCEEEEecCCeEEEEECC-------------CCcEEehhhcc-----CCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence            45566667788999999752             11222333333     36789999999999999876554  445554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.40  E-value=5.2e-05  Score=75.80  Aligned_cols=269  Identities=8%  Similarity=0.087  Sum_probs=152.4

Q ss_pred             eeecCCcEEEEcC--CceeeEecCC-CCCC-----Cccccceeeeeecc-cCCcEEEEecccCCCceeccceeeeeCCCC
Q 012294          138 ATTNYGTLHVSHG--SKITSFDWSM-RKKS-----TILTHFTAVDSLLA-LSPGVAAAGATDFSGLQVLDLENGYVKETL  208 (466)
Q Consensus       138 ~a~~~g~lyva~G--G~ve~YDW~~-a~m~-----~~R~~~~~v~sl~~-l~~~lYaiGG~~~~g~~~l~svE~ydp~t~  208 (466)
                      +..+++.++++.+  |.+..||... ....     ....+.+.+.++++ -++.+|+.++  .++     .+..||+.+.
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~-----~v~~~d~~~~  201 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM--QAN-----AVHVFDLKTL  201 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG--GGT-----EEEEEETTTC
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC--CCC-----EEEEEECCCc
Confidence            3445777885543  3466666332 1111     11122233444444 3567888877  443     4667777765


Q ss_pred             ceeecCCC-CCceeEEEEEC--CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCC
Q 012294          209 NWENVTRS-SSTVQAIGSSD--KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYN  284 (466)
Q Consensus       209 ~W~~va~M-r~~~~Ava~l~--~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~  284 (466)
                      +-...-+. .....+++...  ..+|+ +..     ...|.+||+.+.+.+..+..      ..    .+..+.|.+-++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~------~~----~~~~~~~~~~g~  266 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWI-----SEDISVIDRKTKLEIRKTDK------IG----LPRGLLLSKDGK  266 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEECCC------CS----EEEEEEECTTSS
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-----CCcEEEEECCCCcEEEEecC------CC----CceEEEEcCCCC
Confidence            43221111 22333355553  35887 433     35799999998444333322      11    133445555555


Q ss_pred             eEEEEeecCCCCc-ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEec
Q 012294          285 LLLASGSHSDISK-VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLG  363 (466)
Q Consensus       285 ~Lyv~Gg~~g~~~-~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~  363 (466)
                      .|++++..++... -.+.|.+||++++++++....+ .....+..++++..||..+..++.|.+.|+++..      .+.
T Consensus       267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~------~~~  339 (433)
T 3bws_A          267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK------VQK  339 (433)
T ss_dssp             EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE------EEE
T ss_pred             EEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-CCcceEEECCCCCEEEEEecCCCEEEEEECCCCc------EEE
Confidence            7776665333211 2568999999999988776322 2345678889999999888999999999998533      111


Q ss_pred             cCCccccccccccceeEEEEE--CCEEEEEeC----------------CeEEEeEeeeecCCCCCCCCCcccceeecccc
Q 012294          364 DGRKMVNGKRKEGFGCKIECH--ANQVFCGKG----------------GEIELWSEIVMGSRKSREGGPLEERVFRKNLM  425 (466)
Q Consensus       364 ~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~  425 (466)
                      .    +..  .. .-..++..  +..||++..                +.|.+|.--    ..     .+. ..+.    
T Consensus       340 ~----~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~----~~-----~~~-~~~~----  398 (433)
T 3bws_A          340 S----IPV--FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT----TD-----TVK-EFWE----  398 (433)
T ss_dssp             E----EEC--SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT----TT-----EEE-EEEE----
T ss_pred             E----ecC--CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC----CC-----cEE-EEec----
Confidence            1    110  11 11233333  456887754                388888642    11     001 1111    


Q ss_pred             CccccCCCCceEEEee--ecceeEEEeeccceEEEeccC
Q 012294          426 GRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       426 ~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~  462 (466)
                            .++.|..+++  .|..|+++-.+...|.||+..
T Consensus       399 ------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          399 ------AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ------CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ------CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                  2346888877  577888887778899999853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.37  E-value=0.00051  Score=69.43  Aligned_cols=271  Identities=14%  Similarity=0.165  Sum_probs=151.8

Q ss_pred             CCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-C
Q 012294          142 YGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-S  217 (466)
Q Consensus       142 ~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r  217 (466)
                      ++.+.++++  |.+..||... ....+...+-+.+.++.+..+.+++.|+  .+|.     +..+|..+.+-...-.- .
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s--~dg~-----i~vwd~~~~~~~~~~~~h~  203 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS--TDRT-----VRVWDIKKGCCTHVFEGHN  203 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEE--TTSC-----EEEEETTTTEEEEEECCCS
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEe--CCCC-----EEEEECCCCcEEEEECCCC
Confidence            444442332  4456666322 2222223344566666677666788888  6653     55666665542211111 2


Q ss_pred             CceeEEEEE---CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccc-----c--CCc--eeecC--cceeeEEee
Q 012294          218 STVQAIGSS---DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIY-----G--TDI--ESAIP--ATKLRWVSS  282 (466)
Q Consensus       218 ~~~~Ava~l---~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~-----~--~~~--w~~~~--~~k~~~~~~  282 (466)
                      ..+.+++..   ++.+.+ |+.     ..+|-.||..+.+...........     .  .+.  -....  ......+..
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  278 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG  278 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEET-----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE
T ss_pred             CccEEEEEecCCCCCEEEEEcC-----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC
Confidence            333334544   345555 655     356889999885544333222100     0  000  00000  111223344


Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      ++.++++|+.||      .|.+||.++++++.++..+.+....+..++++..|+ +|+.+|.|.+-|+++.+      ++
T Consensus       279 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~------~~  345 (464)
T 3v7d_B          279 HGNIVVSGSYDN------TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLENGE------LM  345 (464)
T ss_dssp             ETTEEEEEETTS------CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTTE------EE
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc------EE
Confidence            566677777544      799999999999999998988888899999887755 78899999999998733      22


Q ss_pred             ccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee
Q 012294          363 GDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF  441 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~  441 (466)
                      ..    +..  ..+.-..++..++.|+++ .++.|.||.--     .       .+..+.-      .......+..+..
T Consensus       346 ~~----~~~--h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~-----~-------~~~~~~~------~~~~~~~~~~~~~  401 (464)
T 3v7d_B          346 YT----LQG--HTALVGLLRLSDKFLVSAAADGSIRGWDAN-----D-------YSRKFSY------HHTNLSAITTFYV  401 (464)
T ss_dssp             EE----ECC--CSSCEEEEEECSSEEEEEETTSEEEEEETT-----T-------CCEEEEE------ECTTCCCEEEEEE
T ss_pred             EE----EeC--CCCcEEEEEEcCCEEEEEeCCCcEEEEECC-----C-------Cceeeee------cCCCCccEEEEEe
Confidence            22    221  111223445556666664 56789999752     1       1111111      1233446778888


Q ss_pred             ecceeEEEeeccceEEEeccCC
Q 012294          442 GGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       442 gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      .|..|++.-  ...|.||+...
T Consensus       402 ~~~~l~~~~--dg~i~iwd~~~  421 (464)
T 3v7d_B          402 SDNILVSGS--ENQFNIYNLRS  421 (464)
T ss_dssp             CSSEEEEEE--TTEEEEEETTT
T ss_pred             CCCEEEEec--CCeEEEEECCC
Confidence            888777665  46899998654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.35  E-value=0.00037  Score=70.43  Aligned_cols=261  Identities=15%  Similarity=0.198  Sum_probs=146.3

Q ss_pred             ecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCC
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR  215 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~  215 (466)
                      .+++.+.++++  |.+..||+.. ....+...+-..+.++.+. ++.+++.|+  .++.     +..||..+.+  .+..
T Consensus       117 ~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs--~D~~-----i~iwd~~~~~--~~~~  187 (410)
T 1vyh_C          117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS--ADMT-----IKLWDFQGFE--CIRT  187 (410)
T ss_dssp             CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE--TTSC-----CCEEETTSSC--EEEC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe--CCCe-----EEEEeCCCCc--eeEE
Confidence            34566654433  4566676554 3333333333445555554 467888888  6653     4456655433  2222


Q ss_pred             C---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEe
Q 012294          216 S---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASG  290 (466)
Q Consensus       216 M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~G  290 (466)
                      +   ...+.+++... +...+ |+.     ..+|-.||..+.+.+..+.     +...|-    ..+.+ ..++.++++|
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~~~~~~~~~~-----~h~~~v----~~~~~-~~~g~~l~s~  252 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQTGYCVKTFT-----GHREWV----RMVRP-NQDGTLIASC  252 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTCCEEEEEE-----CCSSCE----EEEEE-CTTSSEEEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEe-----CCCccE----EEEEE-CCCCCEEEEE
Confidence            3   23344455543 34444 655     4578999999844333221     111111    11222 2467788888


Q ss_pred             ecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCC-------------------CceEEEEEeeCceeEeecc
Q 012294          291 SHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNL-------------------SAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       291 g~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~-------------------~~i~~v~~~~g~l~~~dlr  351 (466)
                      +.||      +|.+||.++++++-+..+|......+..+++.                   +.++..|+.+|.+.+-|++
T Consensus       253 s~D~------~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          253 SNDQ------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             ETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             cCCC------eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            8544      79999999999888887776555666666643                   3456688899999999998


Q ss_pred             ccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcc
Q 012294          352 KLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRV  428 (466)
Q Consensus       352 ~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  428 (466)
                      +..      ++..    +.+  ..+.=..++.+  +..|+++ .++.|.||.--    ..    . .- ..+.       
T Consensus       327 ~~~------~~~~----~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~----~~----~-~~-~~~~-------  377 (410)
T 1vyh_C          327 TGM------CLMT----LVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NK----R-CM-KTLN-------  377 (410)
T ss_dssp             TTE------EEEE----EEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCT----TS----C-CC-EEEE-------
T ss_pred             CCc------eEEE----EEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CC----c-eE-EEEc-------
Confidence            743      1211    111  01011112222  2344443 56779999642    11    1 11 1112       


Q ss_pred             ccCCCCceEEEeeecce-eEEEeeccceEEEecc
Q 012294          429 TDMGGSKITNLSFGGNK-MFVTRKGQQTVEVWQS  461 (466)
Q Consensus       429 ~~~~~~~i~~~~~gg~r-~f~~~~~~~~~~vw~~  461 (466)
                        ...+.|+.++|.-+. ++++=.....|-||+.
T Consensus       378 --~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          378 --AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             --CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             --CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence              245679999997653 6677777788999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.33  E-value=0.0002  Score=70.16  Aligned_cols=222  Identities=14%  Similarity=0.241  Sum_probs=129.5

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCc--eeecCCC---CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRS---SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLK  253 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W~~va~M---r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~  253 (466)
                      ++...+.||  .++     .+..||..+..  ......+   ...+.+++.. ++.|++|+.     ..+|-.||..+.+
T Consensus       108 ~~~~l~s~~--~d~-----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~-----d~~i~~wd~~~~~  175 (340)
T 1got_B          108 SGNYVACGG--LDN-----ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-----DTTCALWDIETGQ  175 (340)
T ss_dssp             TSSEEEEEE--TTC-----EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEET-----TSCEEEEETTTTE
T ss_pred             CCCEEEEEe--CCC-----eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEEC-----CCcEEEEECCCCc
Confidence            567788888  655     34556554432  1111111   1222223443 455555554     3578999999844


Q ss_pred             ccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC
Q 012294          254 PVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS  333 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~  333 (466)
                      ++..+..     ...    ....+.|.+ ++.++++|+.||      +|.+||.++++++.++..|......+.+++++.
T Consensus       176 ~~~~~~~-----h~~----~v~~~~~~~-~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~  239 (340)
T 1got_B          176 QTTTFTG-----HTG----DVMSLSLAP-DTRLFVSGACDA------SAKLWDVREGMCRQTFTGHESDINAICFFPNGN  239 (340)
T ss_dssp             EEEEECC-----CSS----CEEEEEECT-TSSEEEEEETTS------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEEcC-----CCC----ceEEEEECC-CCCEEEEEeCCC------cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC
Confidence            4433321     111    123445554 667788888544      799999999999999988887788888998876


Q ss_pred             ceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce-eEEEEE-CCEEEEE--eCCeEEEeEeeeecCCCC
Q 012294          334 AIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG-CKIECH-ANQVFCG--KGGEIELWSEIVMGSRKS  409 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~-~~~~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~  409 (466)
                      . +..|+.+|.+.+-|+++...   -..+...+       .. .+ ..++.. +|+++++  .++.|.||.-.    .. 
T Consensus       240 ~-l~s~s~d~~v~iwd~~~~~~---~~~~~~~~-------~~-~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~----~~-  302 (340)
T 1got_B          240 A-FATGSDDATCRLFDLRADQE---LMTYSHDN-------II-CGITSVSFSKSGRLLLAGYDDFNCNVWDAL----KA-  302 (340)
T ss_dssp             E-EEEEETTSCEEEEETTTTEE---EEEECCTT-------CC-SCEEEEEECTTSSEEEEEETTSEEEEEETT----TC-
T ss_pred             E-EEEEcCCCcEEEEECCCCcE---EEEEccCC-------cc-cceEEEEECCCCCEEEEECCCCeEEEEEcc----cC-
Confidence            5 55888999999999987431   01111100       00 11 112221 3444433  56789999742    11 


Q ss_pred             CCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294          410 REGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       410 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                         .  ....    +-+     ..+.|..++|--| +++++=.....|-||+
T Consensus       303 ---~--~~~~----~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 ---D--RAGV----LAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---C--EEEE----EEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ---c--EeeE----eec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence               1  1111    222     3567999988644 4566667777899995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.30  E-value=0.00037  Score=69.71  Aligned_cols=234  Identities=15%  Similarity=0.202  Sum_probs=139.2

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECCeEEEEecCCCcCCCeeEEEec
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDI  249 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp  249 (466)
                      .+.++++. ++.++++|+  .+|     .+..||..+.+-...-.- ...+.+++..++.|++|+.     ...|-.||.
T Consensus       136 ~v~~v~~s~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----dg~i~i~d~  203 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGL--GNG-----LVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSR-----SGAIHHHDV  203 (401)
T ss_dssp             CEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEET-----TSEEEEEET
T ss_pred             CEEEEEECCCCCEEEEEC--CCC-----eEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcC-----CCCEEEEec
Confidence            34444444 566788887  555     356677766543222112 3444445554444544665     357899999


Q ss_pred             CC-CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceee
Q 012294          250 NS-LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTV  328 (466)
Q Consensus       250 ~t-~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v  328 (466)
                      .+ .+.+..+..     ..    .....+.|.+ ++.++++|+.||      .|.+||.++++.+.+..++......+..
T Consensus       204 ~~~~~~~~~~~~-----~~----~~v~~~~~~~-~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~v~~~~~  267 (401)
T 4aez_A          204 RIANHQIGTLQG-----HS----SEVCGLAWRS-DGLQLASGGNDN------VVQIWDARSSIPKFTKTNHNAAVKAVAW  267 (401)
T ss_dssp             TSSSCEEEEEEC-----CS----SCEEEEEECT-TSSEEEEEETTS------CEEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred             ccCcceeeEEcC-----CC----CCeeEEEEcC-CCCEEEEEeCCC------eEEEccCCCCCccEEecCCcceEEEEEE
Confidence            85 111111110     01    1223455665 667777887544      7999999999999999888888899999


Q ss_pred             ecCCCceEEEEE--eeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEE---eCCeEEEeEee
Q 012294          329 SDNLSAIYKVGI--NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG---KGGEIELWSEI  402 (466)
Q Consensus       329 ~~~~~~i~~v~~--~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~---~~~~~~v~~~~  402 (466)
                      ++++..++..|+  .+|.|.+-|+++...      +..    +..  ... ......-.+..|+++   .++.|.||.-.
T Consensus       268 ~p~~~~ll~~~~gs~d~~i~i~d~~~~~~------~~~----~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          268 CPWQSNLLATGGGTMDKQIHFWNAATGAR------VNT----VDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             CTTSTTEEEEECCTTTCEEEEEETTTCCE------EEE----EEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCCCEEEEecCCCCCEEEEEECCCCCE------EEE----EeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            999999998876  899999999987441      111    111  111 222222234455554   47899999864


Q ss_pred             eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          403 VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                          ..     .. ...+.  +-     ...+.|..+++-  |..|+..- ....|-||+...
T Consensus       336 ----~~-----~~-~~~~~--~~-----~h~~~v~~~~~s~dg~~l~s~~-~dg~i~iw~~~~  380 (401)
T 4aez_A          336 ----SS-----GL-TKQVD--IP-----AHDTRVLYSALSPDGRILSTAA-SDENLKFWRVYD  380 (401)
T ss_dssp             ----TT-----EE-EEEEE--EE-----CCSSCCCEEEECTTSSEEEEEC-TTSEEEEEECCC
T ss_pred             ----Cc-----cc-eeEEE--ec-----CCCCCEEEEEECCCCCEEEEEe-CCCcEEEEECCC
Confidence                11     01 11111  11     234578877775  55565554 446799998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.30  E-value=0.00029  Score=71.20  Aligned_cols=256  Identities=14%  Similarity=0.158  Sum_probs=140.8

Q ss_pred             CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC
Q 012294          151 SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK  228 (466)
Q Consensus       151 G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~  228 (466)
                      |.+..||+.. ....+...+-..+.++.+ ++..++.|+  .+|     ++..||..+.+-...-.- ...+.+++. ++
T Consensus       179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~s--~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~  249 (445)
T 2ovr_B          179 RTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVVSGS--RDA-----TLRVWDIETGQCLHVLMGHVAAVRCVQY-DG  249 (445)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEESSSCCEEEEEECCSSCEEEEEE-CS
T ss_pred             CeEEEEECCcCcEEEEECCCCCcEEEEEe-cCCEEEEEe--CCC-----EEEEEECCCCcEEEEEcCCcccEEEEEE-CC
Confidence            3455666433 222222223333444433 667778887  555     355666665442111111 233333444 55


Q ss_pred             e-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294          229 H-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI  307 (466)
Q Consensus       229 ~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp  307 (466)
                      . |++|+.     ...|..||+.+.+++.++....     .    ....+.   .++..+++|+.||      +|.+||.
T Consensus       250 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~-----~----~v~~~~---~~~~~l~~~~~d~------~i~i~d~  306 (445)
T 2ovr_B          250 RRVVSGAY-----DFMVKVWDPETETCLHTLQGHT-----N----RVYSLQ---FDGIHVVSGSLDT------SIRVWDV  306 (445)
T ss_dssp             SCEEEEET-----TSCEEEEEGGGTEEEEEECCCS-----S----CEEEEE---ECSSEEEEEETTS------CEEEEET
T ss_pred             CEEEEEcC-----CCEEEEEECCCCcEeEEecCCC-----C----ceEEEE---ECCCEEEEEeCCC------eEEEEEC
Confidence            5 444665     3578999999855444443211     0    112222   3777778887544      7999999


Q ss_pred             CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCE
Q 012294          308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQ  387 (466)
Q Consensus       308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~  387 (466)
                      ++++++++...+......+..  ++. ++.+|+.+|.|.+-|+++.+.  . ..+...   ..   ....=..++..++.
T Consensus       307 ~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~vwd~~~~~~--~-~~~~~~---~~---~~~~v~~~~~~~~~  374 (445)
T 2ovr_B          307 ETGNCIHTLTGHQSLTSGMEL--KDN-ILVSGNADSTVKIWDIKTGQC--L-QTLQGP---NK---HQSAVTCLQFNKNF  374 (445)
T ss_dssp             TTCCEEEEECCCCSCEEEEEE--ETT-EEEEEETTSCEEEEETTTCCE--E-EEECST---TS---CSSCEEEEEECSSE
T ss_pred             CCCCEEEEEcCCcccEEEEEE--eCC-EEEEEeCCCeEEEEECCCCcE--E-EEEccC---CC---CCCCEEEEEECCCE
Confidence            999999999888655555444  343 555888999999999987441  0 111110   00   11122234455556


Q ss_pred             EEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccce-----EEEecc
Q 012294          388 VFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQT-----VEVWQS  461 (466)
Q Consensus       388 lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~-----~~vw~~  461 (466)
                      |+++ .++.|.||.--    ..         +..+. +.........+.|..+++-.+..+++=-..++     +.||+-
T Consensus       375 l~s~~~dg~v~iwd~~----~~---------~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLK----TG---------EFIRN-LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             EEEEETTSEEEEEETT----TC---------CEEEE-EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEEEeCCCeEEEEECC----CC---------ceeee-eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            6655 46789999742    11         11121 11111123567899999987776654443333     999986


Q ss_pred             CCC
Q 012294          462 SSR  464 (466)
Q Consensus       462 ~~~  464 (466)
                      ...
T Consensus       441 ~~~  443 (445)
T 2ovr_B          441 DVD  443 (445)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.30  E-value=0.00056  Score=64.86  Aligned_cols=226  Identities=15%  Similarity=0.165  Sum_probs=127.9

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CCe-EEEEecCCCcCCCeeE
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DKH-LFVSFESGRRNSNSIM  245 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~~-IYaGg~~g~~~l~sVE  245 (466)
                      .+.++.+. +++.+++|+  .+|     .+..||..+.+......+   ...+.+++.. ++. |++|+.+     ..|.
T Consensus        99 ~v~~~~~~~~~~~l~~~~--~d~-----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~  166 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGG--EAS-----TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIA  166 (337)
T ss_dssp             BEEEEEECTTSSEEEEEE--SSS-----EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             cEEEEEEcCCCCEEEEEc--CCC-----cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEE
Confidence            34444444 456777777  554     466777777664333322   2233334554 344 4446553     4689


Q ss_pred             EEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccc
Q 012294          246 VYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSD  325 (466)
Q Consensus       246 ~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~  325 (466)
                      .||..+.+++..+....         .....+.|.+ ++.++++|+.      .+.|.+||.++++.+.... +......
T Consensus       167 ~~d~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~-~~~~v~~  229 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQGHT---------DGASCIDISN-DGTKLWTGGL------DNTVRSWDLREGRQLQQHD-FTSQIFS  229 (337)
T ss_dssp             EEETTTTEEEEEECCCS---------SCEEEEEECT-TSSEEEEEET------TSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred             EEeCCCCceeeeeeccc---------CceEEEEECC-CCCEEEEEec------CCcEEEEECCCCceEeeec-CCCceEE
Confidence            99999854444332111         1123345554 5555666664      4479999999999887764 3345567


Q ss_pred             eeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE-eCCeEEEeEee
Q 012294          326 VTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEIELWSEI  402 (466)
Q Consensus       326 ~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~~v~~~~  402 (466)
                      +..++++..|+ ++..+|.|.+.|++..+.    ..+..         ..+.-..++..  +..|+++ .++.|.+|.-.
T Consensus       230 ~~~s~~~~~l~-~~~~~~~i~~~~~~~~~~----~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          230 LGYCPTGEWLA-VGMESSNVEVLHVNKPDK----YQLHL---------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEECTTSSEEE-EEETTSCEEEEETTSSCE----EEECC---------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEECCCCCEEE-EEcCCCcEEEEECCCCCe----EEEcC---------CccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            77888877654 788899999999987541    11111         11111223332  3344444 57789999742


Q ss_pred             eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294          403 VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                           .       .+.++..        ...+.|..+++--| +++++=.+...|.||+
T Consensus       296 -----~-------~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          296 -----Y-------GASIFQS--------KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             -----T-------CCEEEEE--------ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             -----C-------CeEEEEe--------cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence                 1       1112111        24567998888532 3444445566789997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.27  E-value=0.00046  Score=67.38  Aligned_cols=240  Identities=15%  Similarity=0.216  Sum_probs=135.3

Q ss_pred             eeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE----CCeEEE-EecCCCcCCCe
Q 012294          171 TAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS----DKHLFV-SFESGRRNSNS  243 (466)
Q Consensus       171 ~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l----~~~IYa-Gg~~g~~~l~s  243 (466)
                      ..+.++.+.  ++.+++.|+  .+|     .+..||..+.+-...........+++..    ++.+.+ |+.     ...
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  167 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSS--FDK-----TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR-----GPK  167 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEE--TTS-----EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-----SSS
T ss_pred             CcEEEEEEccCCCcEEEEEe--CCC-----eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-----CCe
Confidence            445555555  445777777  554     3556666655433222221222223333    222444 655     356


Q ss_pred             eEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-eeeEE------
Q 012294          244 IMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-VAWEV------  316 (466)
Q Consensus       244 VE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~------  316 (466)
                      |..||..+.+++..+....         .+...+.|.+-+..|+++|+.+|      .|.+||.++++ ++..+      
T Consensus       168 v~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          168 VQLCDLKSGSCSHILQGHR---------QEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             EEEEESSSSCCCEEECCCC---------SCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTC
T ss_pred             EEEEeCCCcceeeeecCCC---------CcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccc
Confidence            8999999855444433211         12345567666666888888554      79999999876 33333      


Q ss_pred             ---------cCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeE--EEEEC
Q 012294          317 ---------KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCK--IECHA  385 (466)
Q Consensus       317 ---------~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~--~~~~~  385 (466)
                               ..+......+..++++..|+ +|+.+|.|.+-|+++.+.  .........  ..  ........  .....
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~--~~~~~~~~~--~~--~~~~~~~~~~~~~~~  305 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLL-TVGTDNRMRLWNSSNGEN--TLVNYGKVC--NN--SKKGLKFTVSCGCSS  305 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCB--CCCCCCCCC--CC--CSSCCCCEECCSSSS
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEE-EecCCCeEEEEECCCCcc--ceecccccc--cc--ccccceeEEecCCCc
Confidence                     34455667778888877654 788999999999998652  001011100  00  00001111  11124


Q ss_pred             CEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccCC
Q 012294          386 NQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       386 ~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~  463 (466)
                      ..++++.++.|.||.-.    ..         +. .+.+-+     ..+.|+.+++--| +++++=.+...|-||+...
T Consensus       306 ~~~~~~~~~~i~v~d~~----~~---------~~-~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          306 EFVFVPYGSTIAVYTVY----SG---------EQ-ITMLKG-----HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             CEEEEEETTEEEEEETT----TC---------CE-EEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eEEEEecCCEEEEEECc----CC---------cc-eeeecc-----CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            56677789999999753    11         11 111111     3567999888754 5566666667899998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.26  E-value=0.00046  Score=68.39  Aligned_cols=282  Identities=12%  Similarity=0.078  Sum_probs=150.5

Q ss_pred             cCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC
Q 012294          141 NYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       141 ~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      +++.+.++++  |.+..||... ........+-..+.++++. ++.+.+.|+  .++     .+..||..+.+  .+..+
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~-----~i~iwd~~~~~--~~~~~  177 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS--QDM-----QLKIWSVKDGS--NPRTL  177 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCC--CCEEE
T ss_pred             cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe--CCC-----eEEEEeCCCCc--CceEE
Confidence            4565553432  3455555322 1111222333455555555 466777777  555     35566665432  11111


Q ss_pred             ---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCc----ee-----------ecCcce
Q 012294          217 ---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDI----ES-----------AIPATK  276 (466)
Q Consensus       217 ---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~----w~-----------~~~~~k  276 (466)
                         ...+.+++.. ++..++ |+.     ..+|..||..+.+++..+..........    |.           ......
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~  252 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASL-----DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN  252 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEET-----TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcC-----CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence               2334445555 344444 655     3468999999865555544311000000    00           000111


Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC-CcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      +.|. -++.++++|+.+|      .|.+||.++++.+.+... +......+..++++..++..|+.+|.|.+-|+++.+.
T Consensus       253 ~~~s-~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          253 LEFG-TYGKYVIAGHVSG------VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TCSS-CTTEEEEEEETTS------CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             eEEc-CCCCEEEEEcCCC------eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            2222 3666777777444      799999999998888754 4566778889999986777899999999999998552


Q ss_pred             CCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGG  433 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  433 (466)
                        +-..+..        .....-..+....++++++  .++.|.+|.-.......  .-..+....+   ++     ...
T Consensus       326 --~~~~~~~--------~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~---~~-----~~~  385 (420)
T 3vl1_A          326 --PVGEFLI--------NEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESER--PAIEFETPTF---LV-----SND  385 (420)
T ss_dssp             --CSEEEEE--------STTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCS--CEECTTSCEE---EC-----CSS
T ss_pred             --chhhhhc--------cCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCc--cceeccCccE---Ec-----cCC
Confidence              1111111        0111233446667877776  46789999854211110  0000011100   11     234


Q ss_pred             CceEEEee--ecc---eeEEEeeccceEEEeccCCC
Q 012294          434 SKITNLSF--GGN---KMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       434 ~~i~~~~~--gg~---r~f~~~~~~~~~~vw~~~~~  464 (466)
                      +.|.++.|  -|.   +|+++=+ ...+-+|....|
T Consensus       386 ~~v~~~~~s~~~~~~g~l~a~g~-~g~~~~~~~~~~  420 (420)
T 3vl1_A          386 DAVSQFCYVSDDESNGEVLEVGK-NNFCALYNLSNP  420 (420)
T ss_dssp             CCCCEEEEECCSSSSCEEEEEET-TTEEEEEESCC-
T ss_pred             cceEEEEEccCCCCcceEEEEcC-CceEEEEeccCC
Confidence            56777765  344   5666654 457888987643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.25  E-value=0.00047  Score=68.47  Aligned_cols=269  Identities=13%  Similarity=0.116  Sum_probs=136.2

Q ss_pred             EEEEcCCceeeEecCC-CCCCCccccceeeeeecc-cCCcEEEEecccCCCceecc-ceeeeeCCCCc--eeecCCC---
Q 012294          145 LHVSHGSKITSFDWSM-RKKSTILTHFTAVDSLLA-LSPGVAAAGATDFSGLQVLD-LENGYVKETLN--WENVTRS---  216 (466)
Q Consensus       145 lyva~GG~ve~YDW~~-a~m~~~R~~~~~v~sl~~-l~~~lYaiGG~~~~g~~~l~-svE~ydp~t~~--W~~va~M---  216 (466)
                      +|+..+|......|.+ +..+  ..+-..+.++++ -+|++.|.|+  .+.....+ ++..|+..+..  .......   
T Consensus        18 ~~~~~~g~~~~~~w~~p~~~p--~~H~~~V~~v~fSpDG~~las~s--~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~   93 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVTAP--ACMEVQIGAVRYRRDGALLLAAS--SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT   93 (357)
T ss_dssp             ------------------------CCCSEEEEEEECSSSCEEEEEE--CSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred             eEEecCCCccccccCCCCCCc--ccccCCEEEEEECCCCCEEEEEc--CCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence            4434444333344876 2222  122233444444 3567777777  43221111 23344333221  1111111   


Q ss_pred             CCceeEEEEECC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          217 SSTVQAIGSSDK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       217 r~~~~Ava~l~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      ...+.+++...+ .+.+++.     ..+|..||..+.+......... ++...    +...+.|.+ ++.++++|+.|| 
T Consensus        94 ~~~V~~~~~s~d~~~l~~s~-----dg~v~lWd~~~~~~~~~~~~~~-~~h~~----~V~~v~~sp-dg~~l~sgs~dg-  161 (357)
T 4g56_B           94 EAGVTDVAWVSEKGILVASD-----SGAVELWEILEKESLLVNKFAK-YEHDD----IVKTLSVFS-DGTQAVSGGKDF-  161 (357)
T ss_dssp             SSCEEEEEEETTTEEEEEET-----TSCEEEC--------CCCCEEE-CCCSS----CEEEEEECS-SSSEEEEEETTS-
T ss_pred             CCCEEEEEEcCCCCEEEEEC-----CCEEEEeeccccceeEEEeecc-CCCCC----CEEEEEECC-CCCEEEEEeCCC-
Confidence            333444666654 5555554     3468999998833222111100 00010    123344544 566677787544 


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                           +|.+||.++++++.++..|.+....++++.++..++..++.+|.|.+-|+++...      +..    .......
T Consensus       162 -----~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~------~~~----~~~~~~~  226 (357)
T 4g56_B          162 -----SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP------ATR----IDFCASD  226 (357)
T ss_dssp             -----CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC------BCB----CCCTTCC
T ss_pred             -----eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce------eee----eeecccc
Confidence                 7999999999999999998877888888999988898999999999999987542      111    1100011


Q ss_pred             cceeEEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEE
Q 012294          376 GFGCKIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVT  449 (466)
Q Consensus       376 ~~~~~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~  449 (466)
                      ..-..|+.+  +++++++  .++.|.+|.--    ..    .  ..+.++         ...+.|+.++|-  |.+++++
T Consensus       227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----~~----~--~~~~~~---------~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NP----D--SAQTSA---------VHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             SCEEEEEECTTSTTEEEEEESSSCEEEEESS----CG----G--GCEEEC---------CCSSCEEEEEECSSSSCCEEE
T ss_pred             ccccchhhhhcccceEEEeecccceeEEECC----CC----c--EeEEEe---------ccceeEEEEEEcCCCCCEEEE
Confidence            122234443  4566654  67789999642    11    0  111112         135579999884  6688888


Q ss_pred             eeccceEEEeccCC
Q 012294          450 RKGQQTVEVWQSSS  463 (466)
Q Consensus       450 ~~~~~~~~vw~~~~  463 (466)
                      =.+-..|-||+...
T Consensus       288 gs~D~~i~iwd~~~  301 (357)
T 4g56_B          288 ISEDCTVAVLDADF  301 (357)
T ss_dssp             EETTSCEEEECTTS
T ss_pred             EeCCCEEEEEECCC
Confidence            88888899998653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.23  E-value=0.0015  Score=64.61  Aligned_cols=228  Identities=12%  Similarity=0.130  Sum_probs=132.2

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      .++.++|+|+  .+|     .+..||..+.+=...-.- ...+.+++.. ++.+.+ |+.     ..+|-.||..+.+.+
T Consensus       107 ~~~~~l~~~~--~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          107 LQMRRFILGT--TEG-----DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVKDGSNP  174 (420)
T ss_dssp             SSSCEEEEEE--TTS-----CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCCC
T ss_pred             cCCCEEEEEE--CCC-----CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCcCc
Confidence            4678888888  655     355666655442222111 3344445555 344444 655     357999999985544


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc---------------
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV---------------  320 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~---------------  320 (466)
                      ..+...     .    .+...+.|.+ ++.++++|+.||      +|.+||.+++++++++..+.               
T Consensus       175 ~~~~~h-----~----~~v~~~~~~~-~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  238 (420)
T 3vl1_A          175 RTLIGH-----R----ATVTDIAIID-RGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT  238 (420)
T ss_dssp             EEEECC-----S----SCEEEEEEET-TTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECC
T ss_pred             eEEcCC-----C----CcEEEEEEcC-CCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCC
Confidence            443210     1    1233456665 455556777444      79999999999999887531               


Q ss_pred             ---------ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CC-EE
Q 012294          321 ---------DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--AN-QV  388 (466)
Q Consensus       321 ---------d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~-~l  388 (466)
                               .....+..++++..| .+|..+|.|.+-|+++...  . ..+..     .   ....-..++..  +. .|
T Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~--~-~~~~~-----~---~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          239 DRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKEQ--T-IQLPS-----K---FTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             CSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCCE--E-EEECC-----T---TSSCEEEEEECSSCTTEE
T ss_pred             cceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCce--e-EEccc-----c---cCCCceeEEEeCCCCCEE
Confidence                     222334445566554 5788999999999987542  0 11110     0   01112223333  22 45


Q ss_pred             EEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          389 FCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       389 f~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      +++ .++.|.||.--    ..    .. .-..+..        ..++.|+.+.+--++++++=.+...|-||+...
T Consensus       307 ~~g~~dg~i~vwd~~----~~----~~-~~~~~~~--------~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          307 YAGYENGMLAQWDLR----SP----EC-PVGEFLI--------NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEETTSEEEEEETT----CT----TS-CSEEEEE--------STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             EEEeCCCeEEEEEcC----CC----cC-chhhhhc--------cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            554 55789999642    11    00 0111121        245678888888778888888888999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.22  E-value=0.00036  Score=67.13  Aligned_cols=215  Identities=13%  Similarity=0.144  Sum_probs=127.4

Q ss_pred             CCc-EEEEecccCCCceeccceeeeeCCCCceeecCCC----C------CceeEEEEEC--CeEEEEecCCCcCCCeeEE
Q 012294          180 SPG-VAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----S------STVQAIGSSD--KHLFVSFESGRRNSNSIMV  246 (466)
Q Consensus       180 ~~~-lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r------~~~~Ava~l~--~~IYaGg~~g~~~l~sVE~  246 (466)
                      +++ +|+.+.  .++     .+..+|+.+.+-...-+.    +      ....+++...  +.||++...   ....|.+
T Consensus        99 dg~~l~v~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~i~~  168 (353)
T 3vgz_A           99 TTQTLWFGNT--VNS-----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---KESVIWV  168 (353)
T ss_dssp             TTTEEEEEET--TTT-----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---SSCEEEE
T ss_pred             CCCEEEEEec--CCC-----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---CCceEEE
Confidence            455 777665  332     566788877653211111    1      0123355543  468883321   1357999


Q ss_pred             EecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----ccc
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDC  322 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~  322 (466)
                      ||+.+.+.+..+....         ..+..+.+.+-++.||++..       .+.|.+||+.++++++.....    ...
T Consensus       169 ~d~~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~  232 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTG---------KMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHF  232 (353)
T ss_dssp             EETTTTEEEEEECCCC---------TTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred             EcCCCCceEEEecCCC---------CccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence            9999955444433100         01344556666778888754       347889999999999888652    223


Q ss_pred             ccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeE
Q 012294          323 FSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWS  400 (466)
Q Consensus       323 ~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~  400 (466)
                      ..++++++++..||..+..++.|++.|+.+.+.    +  ..    ...  ....+..+.--+++||++.  ++.|.+|.
T Consensus       233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~--~~----~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNI----L--AK----VAA--PESLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEEEEEETTTTEEEEEESSSSEEEEEETTTCCE----E--EE----EEC--SSCCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----E--EE----EEc--CCCceEEECCCCCEEEEEECCCCeEEEEE
Confidence            345789999999998887889999999976441    1  11    110  1112333333456799885  57888886


Q ss_pred             eeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeec
Q 012294          401 EIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKG  452 (466)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~  452 (466)
                      --    ..         ++.+. +      ..++.+..+++  -|.+||++..+
T Consensus       301 ~~----~~---------~~~~~-~------~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          301 AK----SY---------KVVKT-F------DTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TT----TT---------EEEEE-E------ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CC----CC---------eEEEE-E------ecCCCCCeEEEcCCCCEEEEEEcc
Confidence            42    11         11111 0      12345777777  47789999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.19  E-value=0.00075  Score=67.57  Aligned_cols=229  Identities=14%  Similarity=0.236  Sum_probs=129.1

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      +++.+|.|+  .++     ++..||..+.+-...-.- ...+.+++.. ++ .|+.|+.     ..+|-.||..+.+...
T Consensus       134 dg~~l~s~~--~d~-----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          134 DGKFLATGA--EDR-----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             TSSEEEEEE--TTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEc--CCC-----eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----CCcEEEEECCCCeeEE
Confidence            567888888  655     355666665542221111 2333335554 33 3444554     3578999999843333


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE-------cCCcccccceeee
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV-------KDEVDCFSDVTVS  329 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~-------~~~~d~~~~~~v~  329 (466)
                      .+....          ....+.+.+.++.++++|+.||      +|.+||.++++++-..       .+|.+....+..+
T Consensus       202 ~~~~~~----------~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  265 (393)
T 1erj_A          202 TLSIED----------GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  265 (393)
T ss_dssp             EEECSS----------CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             EEEcCC----------CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence            222211          1233445556788889998554      7999999999888766       3556677788888


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCCCCC------eEEeccCCccccccccccceeEEEEE-CCEEEE--EeCCeEEEeE
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGDSSE------WICLGDGRKMVNGKRKEGFGCKIECH-ANQVFC--GKGGEIELWS  400 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~~~~------W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~--~~~~~~~v~~  400 (466)
                      +++..|+ .|+.+|.+.+-|++.......      ..+...    ..+  ....-..++.. +++.++  +.++.|.+|.
T Consensus       266 ~~g~~l~-s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~----~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          266 RDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----YIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             TTSSEEE-EEETTSEEEEEEC---------------CEEEE----EEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             CCCCEEE-EEeCCCEEEEEECCCCCCcccccCCCCCcceEE----Eec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            8887764 788999999999987542000      000000    000  00011112222 233333  3677899997


Q ss_pred             eeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-------ceeEEEeeccceEEEeccC
Q 012294          401 EIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-------NKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-------~r~f~~~~~~~~~~vw~~~  462 (466)
                      --     .   +.  .-..++    +     ..+.|..+++-.       .++|++=.+...|-||+..
T Consensus       339 ~~-----~---~~--~~~~l~----~-----h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          339 KK-----S---GN--PLLMLQ----G-----HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TT-----T---CC--EEEEEE----C-----CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CC-----C---Ce--EEEEEC----C-----CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            42     1   01  111112    2     356788888753       4678888888899999853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.19  E-value=0.00014  Score=72.69  Aligned_cols=198  Identities=14%  Similarity=0.284  Sum_probs=115.7

Q ss_pred             EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC-
Q 012294          230 LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR-  308 (466)
Q Consensus       230 IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-  308 (466)
                      |+.|+.     ..+|-.||..+.+.+..++...    ..-.......+.+.+.++.++++|+.||      +|.+||.+ 
T Consensus       173 l~s~s~-----D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~  237 (380)
T 3iz6_a          173 LITGSG-----DQTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRI  237 (380)
T ss_dssp             EEEECT-----TSCEEEECTTTCCEEEEECCCS----SSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTT
T ss_pred             EEEECC-----CCcEEEEEcCCCcEEEEeeccc----CCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCC
Confidence            555544     4578999999855444332211    0000112334455556788899998555      79999998 


Q ss_pred             CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE--ECC
Q 012294          309 SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC--HAN  386 (466)
Q Consensus       309 t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~  386 (466)
                      +++++-++.+|...+..+..++++.. +..|+.+|.+.+-|+++....  -+.-....+ ...  ....-..++.  .+.
T Consensus       238 ~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~--~~~~~~~~~-~~~--~~~~v~~~~~s~~g~  311 (380)
T 3iz6_a          238 TSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQL--QVYNREPDR-NDN--ELPIVTSVAFSISGR  311 (380)
T ss_dssp             TCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEE--EEECCCCSS-SCC--SSCSCSEEEECSSSS
T ss_pred             CCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEE--EEecccccc-ccc--ccCceEEEEECCCCC
Confidence            45777888888878888899998776 457889999999999974320  011111000 000  0001112222  234


Q ss_pred             EEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccCC
Q 012294          387 QVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       387 ~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~  463 (466)
                      .|++. .++.|.||.-.    .        .+.+ +.  ++.......+.|..+++--| +++++=.....|-||+.+.
T Consensus       312 ~l~~g~~dg~i~vwd~~----~--------~~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          312 LLFAGYSNGDCYVWDTL----L--------AEMV-LN--LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEEEECTTSCEEEEETT----T--------CCEE-EE--ECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEEEECCCCEEEEECC----C--------CceE-EE--EecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            45554 67889999742    1        1111 10  11111234667988888643 4566777778899998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.18  E-value=0.00015  Score=71.37  Aligned_cols=220  Identities=13%  Similarity=0.080  Sum_probs=133.0

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC-C-eEEE-EecCCCcCCCeeEEEecCCCCcccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD-K-HLFV-SFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~-~-~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      +.+|+.|+  .++     .+..+|..+.+-...-+......+++... + .||+ +..     .+.|.+||+.+.+.+..
T Consensus         2 ~~l~vs~~--~d~-----~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----d~~i~v~d~~~~~~~~~   69 (391)
T 1l0q_A            2 TFAYIANS--ESD-----NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVIAT   69 (391)
T ss_dssp             EEEEEEET--TTT-----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEEEE
T ss_pred             CEEEEEcC--CCC-----EEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCC-----CCeEEEEECCCCeEEEE
Confidence            35677776  443     45667776654322211112233355543 3 5888 433     35789999998554444


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~  337 (466)
                      +..      ..    .+..+.|.+-+..||+++..      .+.|.+||+++++++.....+. ....+.+++++..||.
T Consensus        70 ~~~------~~----~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           70 VPA------GS----SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEC------SS----SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEE
T ss_pred             EEC------CC----CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEE
Confidence            332      11    23445566667778888753      3479999999999988876553 4467889999999998


Q ss_pred             EEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCC
Q 012294          338 VGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       338 v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~  413 (466)
                      .+..++.|++.|+++...    +  ..    ...  .. .-..++..  +++||++  .++.|.+|.--    ..     
T Consensus       133 ~~~~~~~v~~~d~~~~~~----~--~~----~~~--~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~----~~-----  190 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAV----I--NT----VSV--GR-SPKGIAVTPDGTKVYVANFDSMSISVIDTV----TN-----  190 (391)
T ss_dssp             EETTTTEEEEEETTTTEE----E--EE----EEC--CS-SEEEEEECTTSSEEEEEETTTTEEEEEETT----TT-----
T ss_pred             EeCCCCEEEEEECCCCcE----E--EE----Eec--CC-CcceEEECCCCCEEEEEeCCCCEEEEEECC----CC-----
Confidence            888999999999986431    1  11    110  11 11222322  4578766  45679999642    11     


Q ss_pred             CcccceeeccccCccccCCCCceEEEee--ecceeEEEee--ccceEEEeccC
Q 012294          414 PLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRK--GQQTVEVWQSS  462 (466)
Q Consensus       414 ~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~--~~~~~~vw~~~  462 (466)
                      ... ..+.          ..+.+..+++  .|.+|+++-.  ....|-||+..
T Consensus       191 ~~~-~~~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          191 SVI-DTVK----------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEE-EEEE----------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             eEE-EEEe----------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            001 1111          2335666666  4788999886  56788999854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.17  E-value=0.00075  Score=66.46  Aligned_cols=239  Identities=17%  Similarity=0.219  Sum_probs=138.7

Q ss_pred             eeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC---CCceeEEEEEC--CeEEE-EecCCCcCC
Q 012294          171 TAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS---SSTVQAIGSSD--KHLFV-SFESGRRNS  241 (466)
Q Consensus       171 ~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M---r~~~~Ava~l~--~~IYa-Gg~~g~~~l  241 (466)
                      ..+.++++- ++.+++.|+  .+|     .+..||..+.  ....+..+   ...+.+++...  +.+++ |+.     .
T Consensus        68 ~~v~~~~~s~~~~~l~~~~--~dg-----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d  135 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGAL--DNG-----SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----N  135 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEE--SSS-----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----S
T ss_pred             CceEEEEECCCCCeEEEEc--cCC-----eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----C
Confidence            344455453 456777777  554     3455555541  11112112   23333355553  44444 654     3


Q ss_pred             CeeEEEecCCCC------ccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          242 NSIMVYDINSLK------PVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       242 ~sVE~YDp~t~~------~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                      ..|-.||..+.+      ....+....  +    .......+.|.+-++.++++|+.+|      .|.+||.++++++.+
T Consensus       136 g~v~iwd~~~~~~~~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~  203 (416)
T 2pm9_A          136 GEIFIWDMNKCTESPSNYTPLTPGQSM--S----SVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIH  203 (416)
T ss_dssp             SCEEBCBTTTTSSCTTTCCCBCCCCSC--C----SSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCcccccccccccccccc--C----CCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceE
Confidence            568899998843      111111100  0    0112345566665567788887544      799999999999988


Q ss_pred             EcCC------cccccceeeecCCCceEEEEEeeC---ceeEeeccccCCCCCeEEeccCCcccc-ccccccceeEEEEE-
Q 012294          316 VKDE------VDCFSDVTVSDNLSAIYKVGINSG---EVSYMDLRKLGDSSEWICLGDGRKMVN-GKRKEGFGCKIECH-  384 (466)
Q Consensus       316 ~~~~------~d~~~~~~v~~~~~~i~~v~~~~g---~l~~~dlr~~~~~~~W~~~~~~~~~m~-~~~~~~~~~~~~~~-  384 (466)
                      ...+      ......+..++++..++.++..+|   .|.+-|+++...     ++..    +. . ... .-..++.. 
T Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~----~~~~-~~~-~v~~~~~s~  272 (416)
T 2pm9_A          204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQT----LNQG-HQK-GILSLDWCH  272 (416)
T ss_dssp             ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBC----CCSC-CSS-CEEEEEECS
T ss_pred             EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEE----eecC-ccC-ceeEEEeCC
Confidence            8766      566788889999988888999998   999999998531     0111    11 1 011 12233332 


Q ss_pred             -CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc--eeEEEeeccceEEEe
Q 012294          385 -ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN--KMFVTRKGQQTVEVW  459 (466)
Q Consensus       385 -~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw  459 (466)
                       +++++++  .++.|.||.--     .       .+.+ + .+-     ...+.|..+++--|  +++++=.....|-||
T Consensus       273 ~~~~~l~s~~~dg~v~~wd~~-----~-------~~~~-~-~~~-----~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          273 QDEHLLLSSGRDNTVLLWNPE-----S-------AEQL-S-QFP-----ARGNWCFKTKFAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             SCSSCEEEEESSSEEEEECSS-----S-------CCEE-E-EEE-----CSSSCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred             CCCCeEEEEeCCCCEEEeeCC-----C-------Cccc-e-eec-----CCCCceEEEEECCCCCCEEEEEecCCcEEEE
Confidence             4554444  56789999632     1       0111 1 111     13456888888654  688888888899999


Q ss_pred             ccCC
Q 012294          460 QSSS  463 (466)
Q Consensus       460 ~~~~  463 (466)
                      +...
T Consensus       334 ~~~~  337 (416)
T 2pm9_A          334 TLQN  337 (416)
T ss_dssp             ESCC
T ss_pred             EccC
Confidence            8654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.17  E-value=0.00024  Score=70.96  Aligned_cols=223  Identities=14%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINS  251 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t  251 (466)
                      ++.+|+.++  .++     .+..||+.+.+.....+.      ...+.+++.. ++.+|+ ++.     ...|.+||+.+
T Consensus       133 ~~~~~~~~~--~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~~  200 (433)
T 3bws_A          133 NTRLAIPLL--EDE-----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLKT  200 (433)
T ss_dssp             SSEEEEEBT--TSS-----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETTT
T ss_pred             CCeEEEEeC--CCC-----eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECCC
Confidence            567777776  443     466778887765543332      1223324443 567888 543     35789999998


Q ss_pred             CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecC
Q 012294          252 LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDN  331 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~  331 (466)
                      .+.+..+...     .    ..+..+.|.+-++.||+++..+      +.|.+||++++++++....+. ....+.++++
T Consensus       201 ~~~~~~~~~~-----~----~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~  264 (433)
T 3bws_A          201 LAYKATVDLT-----G----KWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKIG-LPRGLLLSKD  264 (433)
T ss_dssp             CCEEEEEECS-----S----SSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCCS-EEEEEEECTT
T ss_pred             ceEEEEEcCC-----C----CCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCCC-CceEEEEcCC
Confidence            5444333210     0    1234456666677888888643      479999999999988876543 3567788899


Q ss_pred             CCceEEEEE-------eeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEe
Q 012294          332 LSAIYKVGI-------NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSE  401 (466)
Q Consensus       332 ~~~i~~v~~-------~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~  401 (466)
                      +..||..+.       .+|.|++.|+++.+.    +..-.        .... ....+.-.+++||++  .++.|.+|.-
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKL----IDTIG--------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EEEEE--------EEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcE----Eeecc--------CCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            998886554       367888999986431    11110        0111 122222234578886  6778999964


Q ss_pred             eeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccc--------------eEEEeccC
Q 012294          402 IVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQ--------------TVEVWQSS  462 (466)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~--------------~~~vw~~~  462 (466)
                      -    ..         ++.+. +      ..++.+..+++.  |.+|+++-.+.+              .|-||+..
T Consensus       333 ~----~~---------~~~~~-~------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          333 K----EK---------KVQKS-I------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             T----TT---------EEEEE-E------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             C----CC---------cEEEE-e------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            2    11         11111 0      124457888876  778999877654              78999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.16  E-value=0.001  Score=65.84  Aligned_cols=213  Identities=10%  Similarity=0.109  Sum_probs=120.0

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCc---cccceeeeeecccCCcEEEEecccCCCceeccceeeeeCC
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTI---LTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKE  206 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~---R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~  206 (466)
                      ++.++.||++.. |.+.+||       |.. ......   .........+...++.||+...  . +     .+-++|+.
T Consensus        50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~-g-----~l~a~d~~  121 (376)
T 3q7m_A           50 ALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--K-A-----QVYALNTS  121 (376)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET--T-S-----EEEEEETT
T ss_pred             EEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC--C-C-----EEEEEECC
Confidence            445888996643 5677888       876 322100   0011111122336777887544  2 2     35567776


Q ss_pred             CC--ceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce-------e
Q 012294          207 TL--NWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK-------L  277 (466)
Q Consensus       207 t~--~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k-------~  277 (466)
                      +.  .|+.-.+-..... .++.++.||++..     ...+-+||+.|       |+.      .|..-....       .
T Consensus       122 tG~~~W~~~~~~~~~~~-p~~~~~~v~v~~~-----~g~l~~~d~~t-------G~~------~W~~~~~~~~~~~~~~~  182 (376)
T 3q7m_A          122 DGTVAWQTKVAGEALSR-PVVSDGLVLIHTS-----NGQLQALNEAD-------GAV------KWTVNLDMPSLSLRGES  182 (376)
T ss_dssp             TCCEEEEEECSSCCCSC-CEEETTEEEEECT-----TSEEEEEETTT-------CCE------EEEEECCC-----CCCC
T ss_pred             CCCEEEEEeCCCceEcC-CEEECCEEEEEcC-----CCeEEEEECCC-------CcE------EEEEeCCCCceeecCCC
Confidence            54  5865433211222 3566899999543     34789999999       543      255432111       1


Q ss_pred             eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc-------cccce--eeecCCCceEEEEEeeCceeEe
Q 012294          278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD-------CFSDV--TVSDNLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d-------~~~~~--~v~~~~~~i~~v~~~~g~l~~~  348 (466)
                      .-+..++.||+...       .+.+..||+++++++|+......       .+.++  .....+..|| ++..+|.|+..
T Consensus       183 ~~~~~~~~v~~g~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~-~~~~~g~l~~~  254 (376)
T 3q7m_A          183 APTTAFGAAVVGGD-------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF-ALAYNGNLTAL  254 (376)
T ss_dssp             CCEEETTEEEECCT-------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE-EECTTSCEEEE
T ss_pred             CcEEECCEEEEEcC-------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE-EEecCcEEEEE
Confidence            12235788877432       34799999999999999864310       11111  1122456777 56688999999


Q ss_pred             eccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC-CeEEEeE
Q 012294          349 DLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG-GEIELWS  400 (466)
Q Consensus       349 dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~-~~~~v~~  400 (466)
                      |+++-+  -.|..-           . +....++..++.||+... +.|-.+.
T Consensus       255 d~~tG~--~~w~~~-----------~-~~~~~~~~~~~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          255 DLRSGQ--IMWKRE-----------L-GSVNDFIVDGNRIYLVDQNDRVMALT  293 (376)
T ss_dssp             ETTTCC--EEEEEC-----------C-CCEEEEEEETTEEEEEETTCCEEEEE
T ss_pred             ECCCCc--EEeecc-----------C-CCCCCceEECCEEEEEcCCCeEEEEE
Confidence            988744  223321           0 123446677899998854 4665554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.16  E-value=0.0007  Score=65.45  Aligned_cols=288  Identities=13%  Similarity=0.115  Sum_probs=151.0

Q ss_pred             eeecCCcEEEEcC--CceeeEecCCC---CCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCcee
Q 012294          138 ATTNYGTLHVSHG--SKITSFDWSMR---KKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       138 ~a~~~g~lyva~G--G~ve~YDW~~a---~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~  211 (466)
                      ...+++.+.++.+  |.+..||....   ...+...+-..+.++.+. ++.+++.|+  .+|     .+..||..+.++.
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg-----~i~vwd~~~~~~~   87 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDR-----NAYVWTLKGRTWK   87 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTS-----CEEEEEEETTEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--CCC-----eEEEEECCCCeee
Confidence            4455666554433  34555552221   222222223344444444 567788887  554     3556777776665


Q ss_pred             ecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294          212 NVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL  286 (466)
Q Consensus       212 ~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L  286 (466)
                      ....+   ...+.+++.. ++.+++ |+.     ...|..||..+.+....+..  ...+.   ......+.|.+ ++.+
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~--~~~~~---~~~i~~~~~~~-~~~~  156 (372)
T 1k8k_C           88 PTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQENDWWVCKH--IKKPI---RSTVLSLDWHP-NSVL  156 (372)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTTTEEEEEE--ECTTC---CSCEEEEEECT-TSSE
T ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCCcceeeee--eeccc---CCCeeEEEEcC-CCCE
Confidence            44332   3334435554 344444 655     35678899887221000000  00000   01223445554 5666


Q ss_pred             EEEeecCCCCcccceEEEEeCC------------------CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294          287 LASGSHSDISKVTGNIKFWDIR------------------SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       287 yv~Gg~~g~~~~~~sVe~yDpr------------------t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~  348 (466)
                      +++|+.+      +.|.+||.+                  +++++-++..+......+..++++..|+ +++.+|.|.+-
T Consensus       157 l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~  229 (372)
T 1k8k_C          157 LAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVSHDSTVCLA  229 (372)
T ss_dssp             EEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEETTTEEEEE
T ss_pred             EEEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE-EEeCCCEEEEE
Confidence            7777744      479999954                  6788888888877778888888887544 77899999999


Q ss_pred             eccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEeCCeEEEeEeeeecCCC------C-----CCCCCcc
Q 012294          349 DLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGKGGEIELWSEIVMGSRK------S-----REGGPLE  416 (466)
Q Consensus       349 dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~------~-----~~~~~~~  416 (466)
                      |+++...      +..    ... .... ......--+..|.++.++.|.+|.--.....+      .     .++....
T Consensus       230 d~~~~~~------~~~----~~~-~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          230 DADKKMA------VAT----LAS-ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             EGGGTTE------EEE----EEC-SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             ECCCCce------eEE----Ecc-CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            9997542      111    111 0111 12222222334555578889999864200000      0     0000000


Q ss_pred             ccee-----ecccc------CccccCCCCceEEEe-eecc----eeEEEeeccceEEEecc
Q 012294          417 ERVF-----RKNLM------GRVTDMGGSKITNLS-FGGN----KMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       417 ~~~~-----r~~~~------~~~~~~~~~~i~~~~-~gg~----r~f~~~~~~~~~~vw~~  461 (466)
                      -++|     +....      ........+.|+.++ +--|    +++++=.+-..|-||+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence            0111     00000      111123456899998 4344    78888888899999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.15  E-value=0.00019  Score=70.19  Aligned_cols=156  Identities=16%  Similarity=0.197  Sum_probs=100.0

Q ss_pred             eeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCceeecCC--------------CCCceeEEEEEC--CeEEE
Q 012294          171 TAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR--------------SSSTVQAIGSSD--KHLFV  232 (466)
Q Consensus       171 ~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~--------------Mr~~~~Ava~l~--~~IYa  232 (466)
                      +.+.++++.  ++.++|.|+  .+|.     +..||..+.+......              -...+.+++...  +.+++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~--~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGG--SDGV-----IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEE--TTSC-----EEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             CcEEEEEEecCCCCEEEEEc--CCCe-----EEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            344444454  567888888  5553     4455554433211110              123334355543  33444


Q ss_pred             -EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee--CCeEEEEeecCCCCcccceEEEEeCCC
Q 012294          233 -SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS--YNLLLASGSHSDISKVTGNIKFWDIRS  309 (466)
Q Consensus       233 -Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~--~~~Lyv~Gg~~g~~~~~~sVe~yDprt  309 (466)
                       |+.     ...|..||..+.+.+..+....          ....+.+.+.  ++.++++|+.+      +.|.+||.++
T Consensus       117 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~  175 (408)
T 4a11_B          117 SSSF-----DKTLKVWDTNTLQTADVFNFEE----------TVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKS  175 (408)
T ss_dssp             EEET-----TSEEEEEETTTTEEEEEEECSS----------CEEEEEECSSCSSCCEEEEEESS------SSEEEEESSS
T ss_pred             EEeC-----CCeEEEeeCCCCccceeccCCC----------ceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCC
Confidence             654     3578999999844443333211          1122333332  45577777744      4799999999


Q ss_pred             CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          310 GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       310 ~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++.....+...+..+..++++..|+..|..+|.|.+-|+|...
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence            999999988887888899999999888899999999999999865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.14  E-value=0.00046  Score=68.75  Aligned_cols=258  Identities=12%  Similarity=0.127  Sum_probs=142.2

Q ss_pred             CceeeEecCC-C----CCCCccccceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCcee-----ecCCC--
Q 012294          151 SKITSFDWSM-R----KKSTILTHFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNWE-----NVTRS--  216 (466)
Q Consensus       151 G~ve~YDW~~-a----~m~~~R~~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~-----~va~M--  216 (466)
                      |.+..||... .    .....+.+-+.+.++++.  ++.+++.|+  .+|     ++..||..+....     .+..+  
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s--~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDC-----TVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE--TTS-----EEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe--CCC-----eEEEEEccCCCCccccCCceEEecC
Confidence            4556666422 1    122233344556666665  578888988  665     3556666655331     11111  


Q ss_pred             -CCceeEEEEECC--eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeec
Q 012294          217 -SSTVQAIGSSDK--HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSH  292 (466)
Q Consensus       217 -r~~~~Ava~l~~--~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~  292 (466)
                       ...+.+++...+  .+++ |+.     ..+|..||..+.+.+..+....   ..    .....+.|.+ ++.++++|+.
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~---~~----~~v~~~~~~~-~~~~l~~~~~  196 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDVGTGAAVLTLGPDV---HP----DTIYSVDWSR-DGALICTSCR  196 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEET-----TSCEEEEETTTTEEEEEECTTT---CC----SCEEEEEECT-TSSCEEEEET
T ss_pred             CCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEECCCCCccEEEecCC---CC----CceEEEEECC-CCCEEEEEec
Confidence             233444555543  3555 665     3568999999855554442000   01    1233455665 5666667764


Q ss_pred             CCCCcccceEEEEeCCCCeeeeEE-cCCccc-ccceeeecCCCceEEEE---EeeCceeEeeccccCCCCCeEEeccCCc
Q 012294          293 SDISKVTGNIKFWDIRSGNVAWEV-KDEVDC-FSDVTVSDNLSAIYKVG---INSGEVSYMDLRKLGDSSEWICLGDGRK  367 (466)
Q Consensus       293 ~g~~~~~~sVe~yDprt~~~vW~~-~~~~d~-~~~~~v~~~~~~i~~v~---~~~g~l~~~dlr~~~~~~~W~~~~~~~~  367 (466)
                      |      +.|.+||+++++++.+. ..+... ...+..++++. ++.+|   ..+|.|.+-|++..+.  +-....    
T Consensus       197 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~~----  263 (402)
T 2aq5_A          197 D------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE--PLSLQE----  263 (402)
T ss_dssp             T------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS--CSEEEE----
T ss_pred             C------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC--CceEEe----
Confidence            4      48999999999999988 566433 56677777755 44455   5899999999998652  111111    


Q ss_pred             ccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc
Q 012294          368 MVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN  444 (466)
Q Consensus       368 ~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~  444 (466)
                       +..  ... ..+...--+..|+++  .++.|.+|.--    ..    ...-..+ ..    .   ...+.|..+++-.|
T Consensus       264 -~~~--~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~----~~----~~~~~~l-~~----~---~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          264 -LDT--SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT----SE----APFLHYL-SM----F---SSKESQRGMGYMPK  324 (402)
T ss_dssp             -CCC--CSSCEEEEEETTTTEEEEEETTCSCEEEEEEC----SS----TTCEEEE-EE----E---CCSSCCSEEEECCG
T ss_pred             -ccC--CCceeEEEEcCCCCEEEEEEcCCCeEEEEEec----CC----CcceEee-cc----c---ccCCcccceEEecc
Confidence             110  111 222222235567655  37789999753    11    0101111 11    0   13456888888777


Q ss_pred             eeEEEeeccceEEEecc
Q 012294          445 KMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       445 r~f~~~~~~~~~~vw~~  461 (466)
                      +.++.-.++ .+-+|+-
T Consensus       325 ~~~~~s~~~-~~~~~~l  340 (402)
T 2aq5_A          325 RGLEVNKCE-IARFYKL  340 (402)
T ss_dssp             GGSCGGGTE-EEEEEEE
T ss_pred             cccceecce-eEEEEEc
Confidence            666655444 6667764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.0011  Score=63.40  Aligned_cols=200  Identities=17%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             eeecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeec
Q 012294          138 ATTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENV  213 (466)
Q Consensus       138 ~a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~v  213 (466)
                      +..+++.+.++.+  |.+..||... ........+-..+.++.+. ++..++.|+  .+|     .+..||..+.+-...
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg-----~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS--ADY-----SIKLWDVSNGQCVAT  111 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTT-----EEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcEEEE
Confidence            3445665553433  3455666333 2222222233345555554 466777887  555     355566655543222


Q ss_pred             CCCCCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeec------CcceeeEEeeCCe
Q 012294          214 TRSSSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAI------PATKLRWVSSYNL  285 (466)
Q Consensus       214 a~Mr~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~------~~~k~~~~~~~~~  285 (466)
                      -.....+.+++... +..++ ++.+.......|..||..+.+....+.....  ...-...      ....+.|.+ ++.
T Consensus       112 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~  188 (369)
T 3zwl_B          112 WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE--EPIHKIITHEGLDAATVAGWST-KGK  188 (369)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--SCSEEEECCTTCCCEEEEEECG-GGC
T ss_pred             eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc--ceeeeccCCcCccceeEEEEcC-CCC
Confidence            11222233344443 33334 5543222257899999988443333222110  0000000      122334544 444


Q ss_pred             EEEEeecCCCCcccceEEEEeCCC-CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          286 LLASGSHSDISKVTGNIKFWDIRS-GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       286 Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++|+.      .+.|.+||.++ .+.+.....+......+..++++..| .++..+|.|.+-|+++..
T Consensus       189 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          189 YIIAGHK------DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYF-ITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             EEEEEET------TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCC
T ss_pred             EEEEEcC------CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEE-EEecCCceEEEEECCCCc
Confidence            5566664      34899999999 78888888887788888899987765 477899999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.10  E-value=0.00027  Score=71.46  Aligned_cols=221  Identities=16%  Similarity=0.233  Sum_probs=122.7

Q ss_pred             CCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCcee---ecCC
Q 012294          142 YGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWE---NVTR  215 (466)
Q Consensus       142 ~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~---~va~  215 (466)
                      ++.+.++++  |.+..||... ....+...+...+.++.+ ++..++.|+  .+|     ++..||..+.+-.   ....
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s--~dg-----~i~vwd~~~~~~~~~~~~~~  253 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCS--KDR-----SIAVWDMASPTDITLRRVLV  253 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC-CTTEEEEEE--TTS-----CEEEEECSSSSCCEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE-cCCEEEEee--CCC-----cEEEEeCCCCCCceeeeEec
Confidence            555553433  4566666443 322232333344444444 566778887  555     3556666554321   1111


Q ss_pred             C-CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCC
Q 012294          216 S-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD  294 (466)
Q Consensus       216 M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g  294 (466)
                      - ...+.+++.-++.|++|+.     ...|-.||..+.+++..+....            ..+..+..++.++++|+.||
T Consensus       254 ~~~~~v~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~------------~~v~~~~~~~~~l~~g~~dg  316 (435)
T 1p22_A          254 GHRAAVNVVDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGHK------------RGIACLQYRDRLVVSGSSDN  316 (435)
T ss_dssp             CCSSCEEEEEEETTEEEEEET-----TSEEEEEETTTCCEEEEEECCS------------SCEEEEEEETTEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCEEEEEeC-----CCeEEEEECCcCcEEEEEcCCC------------CcEEEEEeCCCEEEEEeCCC
Confidence            1 3344445554555665665     3578999999955544443211            11122233566777887444


Q ss_pred             CCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC---CCCeEEeccCCccccc
Q 012294          295 ISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD---SSEWICLGDGRKMVNG  371 (466)
Q Consensus       295 ~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~---~~~W~~~~~~~~~m~~  371 (466)
                            +|.+||.++++++.++..+......+..  + +..+..|+.+|.|.+-|++....   .....++..    +..
T Consensus       317 ------~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~  383 (435)
T 1p22_A          317 ------TIRLWDIECGACLRVLEGHEELVRCIRF--D-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT----LVE  383 (435)
T ss_dssp             ------CEEEEETTTCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE----ECC
T ss_pred             ------eEEEEECCCCCEEEEEeCCcCcEEEEEe--c-CCEEEEEeCCCcEEEEECCCCCCccccccchheee----ccC
Confidence                  7999999999999999888766665555  3 34466888999999999988652   011112221    111


Q ss_pred             cccccceeEEEEECCEEEEE-eCCeEEEeEee
Q 012294          372 KRKEGFGCKIECHANQVFCG-KGGEIELWSEI  402 (466)
Q Consensus       372 ~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~  402 (466)
                        ..+.=..++..+.+|+++ .++.|.+|.=.
T Consensus       384 --h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          384 --HSGRVFRLQFDEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             --CSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred             --CCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence              111122344444455444 46789999754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.09  E-value=0.00064  Score=66.83  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=136.2

Q ss_pred             ccCCcEEEEecccCCCceeccceeeeeCCCCcee-ecCCCCCceeEEEE-ECCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          178 ALSPGVAAAGATDFSGLQVLDLENGYVKETLNWE-NVTRSSSTVQAIGS-SDKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~-~va~Mr~~~~Ava~-l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      +-++++|++..  .+     +.+..+|+.+.+-. .++.. ....++++ -+++||++..    ..+.|-+||+.|.+..
T Consensus        51 ~~~~~lyv~~~--~~-----~~v~viD~~t~~~~~~i~~~-~~p~~i~~~~~g~lyv~~~----~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           51 IRDGIGWIVVN--NS-----HVIFAIDINTFKEVGRITGF-TSPRYIHFLSDEKAYVTQI----WDYRIFIINPKTYEIT  118 (328)
T ss_dssp             EETTEEEEEEG--GG-----TEEEEEETTTCCEEEEEECC-SSEEEEEEEETTEEEEEEB----SCSEEEEEETTTTEEE
T ss_pred             EECCEEEEEEc--CC-----CEEEEEECcccEEEEEcCCC-CCCcEEEEeCCCeEEEEEC----CCCeEEEEECCCCeEE
Confidence            46888999876  32     46788899887652 23222 22223566 6889999331    1468999999995544


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCce
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                      ..+....    ..=....|..+.+  .++.|||+.-  +   ..+.|.++|+++++++++.... ..-.++.+++++. |
T Consensus       119 ~~i~~g~----~~~~~~~p~~i~~--~~~~lyv~~~--~---~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~-l  185 (328)
T 3dsm_A          119 GYIECPD----MDMESGSTEQMVQ--YGKYVYVNCW--S---YQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNK-M  185 (328)
T ss_dssp             EEEECTT----CCTTTCBCCCEEE--ETTEEEEEEC--T---TCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSE-E
T ss_pred             EEEEcCC----ccccCCCcceEEE--ECCEEEEEcC--C---CCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCC-E
Confidence            4332200    0000001222223  6899999863  1   2458999999999988877533 2235677777765 7


Q ss_pred             EEEEEee----------CceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeCCeEEEeEeee
Q 012294          336 YKVGINS----------GEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKGGEIELWSEIV  403 (466)
Q Consensus       336 ~~v~~~~----------g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~~~~~v~~~~~  403 (466)
                      |.++..+          +.|++.|..+..-... +.+..          ...-..|+..  ++.||++-. .|.+|.-- 
T Consensus       186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~-~~~~~----------g~~p~~la~~~d~~~lyv~~~-~v~~~d~~-  252 (328)
T 3dsm_A          186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ-FKFKL----------GDWPSEVQLNGTRDTLYWINN-DIWRMPVE-  252 (328)
T ss_dssp             EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE-EECCT----------TCCCEEEEECTTSCEEEEESS-SEEEEETT-
T ss_pred             EEEECCCccCCccccCCceEEEEECCCCeEEEE-EecCC----------CCCceeEEEecCCCEEEEEcc-EEEEEECC-
Confidence            8777654          7899999876431000 11111          0012245555  688998866 66555431 


Q ss_pred             ecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEe----eccceEEEeccC
Q 012294          404 MGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTR----KGQQTVEVWQSS  462 (466)
Q Consensus       404 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~----~~~~~~~vw~~~  462 (466)
                         ..     .    +..+.++..    .++....|++  -+++|||+-    .....|-||+..
T Consensus       253 ---t~-----~----~~~~~~~~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          253 ---AD-----R----VPVRPFLEF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             ---CS-----S----CCSSCSBCC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ---CC-----c----eeeeeeecC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence               11     1    112222221    2456778888  478999997    677888888754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.07  E-value=0.00012  Score=72.76  Aligned_cols=188  Identities=15%  Similarity=0.065  Sum_probs=110.6

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCceeec
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLNWENV  213 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~v  213 (466)
                      ..+++...+..+  |.+..||... ........+-..+.++++..  +.+++.|+  .+|.     +..||..+.+-...
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~-----v~~wd~~~~~~~~~  219 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGR-----ILLWDTRKPKPATR  219 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSC-----EEECCTTSSSCBCB
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCc-----eEEEECCCCceeee
Confidence            345666553433  3455666333 22222222333444444432  35777787  5553     45566665543222


Q ss_pred             CCC---CCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEE
Q 012294          214 TRS---SSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLL  287 (466)
Q Consensus       214 a~M---r~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Ly  287 (466)
                      ...   ...+.+++..  ++.++| |+.     ...|-.||..+.+++..+....     .    +...+.|.+-++.+.
T Consensus       220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~-----d~~i~~wd~~~~~~~~~~~~~~-----~----~v~~l~~sp~~~~~l  285 (357)
T 4g56_B          220 IDFCASDTIPTSVTWHPEKDDTFACGDE-----TGNVSLVNIKNPDSAQTSAVHS-----Q----NITGLAYSYHSSPFL  285 (357)
T ss_dssp             CCCTTCCSCEEEEEECTTSTTEEEEEES-----SSCEEEEESSCGGGCEEECCCS-----S----CEEEEEECSSSSCCE
T ss_pred             eeeccccccccchhhhhcccceEEEeec-----ccceeEEECCCCcEeEEEeccc-----e----eEEEEEEcCCCCCEE
Confidence            222   2233335554  345777 665     3468899999855444332211     1    123445555555777


Q ss_pred             EEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          288 ASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       288 v~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |+|+.||      +|.+||.++++++... +|.+....++.++.+..++..|+.||.|.+=||.+-+
T Consensus       286 asgs~D~------~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          286 ASISEDC------TVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEETTS------CEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEEeCCC------EEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            8888554      7999999999988654 7877888888888666677789999999999997755

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.07  E-value=0.0014  Score=62.99  Aligned_cols=228  Identities=13%  Similarity=0.054  Sum_probs=129.8

Q ss_pred             cceeeeeCCCCceeecCCC-CCceeEEEEEC-C-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc
Q 012294          198 DLENGYVKETLNWENVTRS-SSTVQAIGSSD-K-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA  274 (466)
Q Consensus       198 ~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~  274 (466)
                      ..+..+|+.+.+-...-+. ..-.+ +++.. + .+|++...    .+.|.+||+.+.+.+..+..........-....+
T Consensus        69 ~~v~~~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHNDLKPFG-ATINNTTQTLWFGNTV----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQP  143 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCS-EEEETTTTEEEEEETT----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEE
T ss_pred             ccEEEEcCCCCeEEEEEecCCCcce-EEECCCCCEEEEEecC----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCC
Confidence            4566777776653322222 11122 44443 3 58883321    3589999999955444443311000000000112


Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+.+.+-++.||+++..     ..+.|..||++++++++....++.....+.+++++..||.. ..++.|++.|+.+.+
T Consensus       144 ~~~~~s~dg~~l~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~i~~~d~~~~~  217 (353)
T 3vgz_A          144 RELVADDATNTVYISGIG-----KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT-NADGELITIDTADNK  217 (353)
T ss_dssp             EEEEEETTTTEEEEEEES-----SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE-CTTSEEEEEETTTTE
T ss_pred             ceEEECCCCCEEEEEecC-----CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEE-cCCCeEEEEECCCCe
Confidence            335566667889988742     13479999999999999886455445778899999998854 458999999988744


Q ss_pred             CCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeC--CeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294          355 DSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKG--GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD  430 (466)
Q Consensus       355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  430 (466)
                      .  .+. +...   -.  .++..-..++..  +++||++..  +.|.+|.--    ..     .    +.++--++.   
T Consensus       218 ~--~~~-~~~~---~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~----~~-----~----~~~~~~~~~---  273 (353)
T 3vgz_A          218 I--LSR-KKLL---DD--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTR----NG-----N----ILAKVAAPE---  273 (353)
T ss_dssp             E--EEE-EECC---CS--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT----TC-----C----EEEEEECSS---
T ss_pred             E--EEE-EEcC---CC--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECC----CC-----c----EEEEEEcCC---
Confidence            1  111 1110   00  011122234443  678998853  678888541    11     1    112111221   


Q ss_pred             CCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                         +.-..++--|++||++-.+...|-||+...
T Consensus       274 ---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          274 ---SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             ---CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             ---CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence               122345556889999998889999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.07  E-value=0.0018  Score=63.39  Aligned_cols=252  Identities=12%  Similarity=0.123  Sum_probs=137.2

Q ss_pred             eeeeeecccC-----C---cEEEEecccCCCceeccceeeeeCCCCc------eeecCCC-----CCceeEEEEE-----
Q 012294          171 TAVDSLLALS-----P---GVAAAGATDFSGLQVLDLENGYVKETLN------WENVTRS-----SSTVQAIGSS-----  226 (466)
Q Consensus       171 ~~v~sl~~l~-----~---~lYaiGG~~~~g~~~l~svE~ydp~t~~------W~~va~M-----r~~~~Ava~l-----  226 (466)
                      ..+.++.+..     +   .+++.|+  .+|.     +..||..+.+      +......     ...+.+++..     
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~--~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTS--FSGD-----LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEE--TTSC-----EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             CcEEEEEEecccccCCccccEEEEEc--CCCC-----EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            4455555554     4   6777777  5553     4445544443      4433222     1344445666     


Q ss_pred             CCeE-EE-EecCCCcCCCeeEEEecCC------CCccc-----cccccccccCCceeecCcceeeEEeeCCeEEEEeecC
Q 012294          227 DKHL-FV-SFESGRRNSNSIMVYDINS------LKPVN-----EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHS  293 (466)
Q Consensus       227 ~~~I-Ya-Gg~~g~~~l~sVE~YDp~t------~~~~~-----~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~  293 (466)
                      ++.. ++ |+.+     ..|-.||..+      .+.+.     .+......  ..-.......+.|.+ ++ ++++|+. 
T Consensus       136 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~-~~-~l~~~~~-  205 (397)
T 1sq9_A          136 LLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVES--PMTPSQFATSVDISE-RG-LIATGFN-  205 (397)
T ss_dssp             --CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC--SSSSCCCCCEEEECT-TS-EEEEECT-
T ss_pred             CCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeecc--ccCCCCCceEEEECC-Cc-eEEEEeC-
Confidence            3444 44 6653     5688999887      33333     22100000  000011233445554 45 7777774 


Q ss_pred             CCCcccceEEEEeCCCCeeeeEEcC---C---cccccceeeecCCCceEEEEEee---CceeEeeccccCCCCCeEEecc
Q 012294          294 DISKVTGNIKFWDIRSGNVAWEVKD---E---VDCFSDVTVSDNLSAIYKVGINS---GEVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       294 g~~~~~~sVe~yDprt~~~vW~~~~---~---~d~~~~~~v~~~~~~i~~v~~~~---g~l~~~dlr~~~~~~~W~~~~~  364 (466)
                           .+.|.+||.++++++.++..   |   ......+..++++..| .++..+   |.|.+-|+++...  ... +..
T Consensus       206 -----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l-~~~~~d~~~g~i~i~d~~~~~~--~~~-~~~  276 (397)
T 1sq9_A          206 -----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGER--IGS-LSV  276 (397)
T ss_dssp             -----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE-EEEEEETTEEEEEEEETTTCCE--EEE-ECB
T ss_pred             -----CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE-EEEecCCCCceEEEEECCCCcc--cce-ecc
Confidence                 44799999999999999988   6   7777888888887654 477788   9999999987542  011 111


Q ss_pred             CC----ccccccccccceeEEEEE--CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeecccc------Cc----
Q 012294          365 GR----KMVNGKRKEGFGCKIECH--ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLM------GR----  427 (466)
Q Consensus       365 ~~----~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~------~~----  427 (466)
                      ..    ..+......+.-..++..  +..|+++ .++.|.||.--    ..        + . .+.+-      ++    
T Consensus       277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~--------~-~-~~~~~~~~~~~~~~~~~  342 (397)
T 1sq9_A          277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK----TK--------E-R-ITTLNMHCDDIEIEEDI  342 (397)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TT--------E-E-EEEEECCGGGCSSGGGC
T ss_pred             CcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC----CC--------c-e-eEEEecccCcccchhhh
Confidence            00    000000011111223332  3444444 56789999642    00        0 0 01111      11    


Q ss_pred             ------cccCCCCceEEEeeecc-----------eeEEEeeccceEEEeccC
Q 012294          428 ------VTDMGGSKITNLSFGGN-----------KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       428 ------~~~~~~~~i~~~~~gg~-----------r~f~~~~~~~~~~vw~~~  462 (466)
                            ..+...+.|..+++--|           +++++=.+...|-||+..
T Consensus       343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence                  11112678999999888           688888888999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.00042  Score=66.91  Aligned_cols=191  Identities=15%  Similarity=0.176  Sum_probs=113.0

Q ss_pred             eecCCcEEEEcC--CceeeEecC--C-CCCCCccccceeeeeeccc-C--CcEEEEecccCCCceeccceeeeeCCCCce
Q 012294          139 TTNYGTLHVSHG--SKITSFDWS--M-RKKSTILTHFTAVDSLLAL-S--PGVAAAGATDFSGLQVLDLENGYVKETLNW  210 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~--~-a~m~~~R~~~~~v~sl~~l-~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W  210 (466)
                      ..+++.+.++.+  |.+..||..  . ......+.+-..+.++.+. +  +.+++.|+  .+|     .+-.||..+.+|
T Consensus        19 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg-----~v~iwd~~~~~~   91 (379)
T 3jrp_A           19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVLIWKEENGRW   91 (379)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTS-----CEEEEEEETTEE
T ss_pred             EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCC-----EEEEEEcCCCce
Confidence            345565553432  445555532  1 1112222333455566664 2  57888888  665     356677777776


Q ss_pred             eecCCC---CCceeEEEEEC---Ce-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee-
Q 012294          211 ENVTRS---SSTVQAIGSSD---KH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS-  282 (466)
Q Consensus       211 ~~va~M---r~~~~Ava~l~---~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-  282 (466)
                      ..+..+   ...+.+++...   +. |++|+.     ...|-.||..+......+.    +.+.   ......+.|.+. 
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~----~~~~---~~~v~~~~~~~~~  159 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPII----IDAH---AIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTTSCCCEEE----EECC---TTCEEEEEECCCC
T ss_pred             eEeeeecCCCcceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCCCceeeEE----ecCC---CCceEEEEEcCcc
Confidence            655443   33444455554   33 444655     4578999998832211110    0000   011234455554 


Q ss_pred             -----------CCeEEEEeecCCCCcccceEEEEeCCCCeee----eEEcCCcccccceeeecCC--CceEEEEEeeCce
Q 012294          283 -----------YNLLLASGSHSDISKVTGNIKFWDIRSGNVA----WEVKDEVDCFSDVTVSDNL--SAIYKVGINSGEV  345 (466)
Q Consensus       283 -----------~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v----W~~~~~~d~~~~~~v~~~~--~~i~~v~~~~g~l  345 (466)
                                 ++.++++|+.||      .|.+||.++++..    -....|......+..++++  ..++..|+.+|.|
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             ----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             ccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence                       577888888554      7999999988644    4455566677888899986  6677789999999


Q ss_pred             eEeeccccC
Q 012294          346 SYMDLRKLG  354 (466)
Q Consensus       346 ~~~dlr~~~  354 (466)
                      .+-|++..+
T Consensus       234 ~iwd~~~~~  242 (379)
T 3jrp_A          234 IIWTQDNEQ  242 (379)
T ss_dssp             EEEEESSTT
T ss_pred             EEEeCCCCC
Confidence            999999854

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.04  E-value=0.0018  Score=63.99  Aligned_cols=175  Identities=18%  Similarity=0.299  Sum_probs=107.2

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      ..+|-.||.++.+++..+..     ...    ....+.+.+. ++.++++|+.||      +|.+||.++++++..+..|
T Consensus       175 D~~v~lwd~~~~~~~~~~~~-----h~~----~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~~h  239 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHG-----HGA----DVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFETH  239 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-----CSS----CEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEECCC
T ss_pred             CCcEEEEeCCCCeEEEEEcC-----CCC----CeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEecCC
Confidence            45789999998544433321     111    1223344443 457788888554      7999999999999999888


Q ss_pred             cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE-eCCeE
Q 012294          320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEI  396 (466)
Q Consensus       320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~  396 (466)
                      .+....+...+++.. +..|+.+|.+.+-|+|....    +..-...   .   ....-..++..  +..|+++ .++.|
T Consensus       240 ~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~----~~~~~~~---~---~~~~~~~~~~s~~g~~l~~g~~d~~i  308 (354)
T 2pbi_B          240 ESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADRE----VAIYSKE---S---IIFGASSVDFSLSGRLLFAGYNDYTI  308 (354)
T ss_dssp             SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEE----EEEECCT---T---CCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcE----EEEEcCC---C---cccceeEEEEeCCCCEEEEEECCCcE
Confidence            777788888888765 55888999999999987431    1111100   0   00011122222  3445544 56689


Q ss_pred             EEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294          397 ELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       397 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                      .||.-.     .       .+.+  ..+.+     ..+.|+.++|--| +++++=.+...|-||+
T Consensus       309 ~vwd~~-----~-------~~~~--~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          309 NVWDVL-----K-------GSRV--SILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETT-----T-------CSEE--EEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECC-----C-------CceE--EEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999742     1       1111  11222     3568999998543 4667777778899995

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.00  E-value=0.0016  Score=64.39  Aligned_cols=224  Identities=17%  Similarity=0.225  Sum_probs=127.5

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC---------CCceeEEEEECCeEEEEecCCCcCCCeeEEE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS---------SSTVQAIGSSDKHLFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M---------r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~Y  247 (466)
                      .++.||+...  ..      .+-+||+.+.  .|+.-.+.         .......++.++.||++..     ...+-++
T Consensus        52 ~~~~v~~~~~--~g------~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-----~g~l~a~  118 (376)
T 3q7m_A           52 ADNVVYAADR--AG------LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE-----KAQVYAL  118 (376)
T ss_dssp             ETTEEEEECT--TS------EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET-----TSEEEEE
T ss_pred             ECCEEEEEcC--CC------eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC-----CCEEEEE
Confidence            7888888765  22      4567777644  57754421         0112336778999999544     3578999


Q ss_pred             ecCCCCccccccccccccCCceeecCcce--eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc--
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPATK--LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF--  323 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k--~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~--  323 (466)
                      |+.|       |+.      .|+.-....  ..-+..++.||+...       .+.+..||+++++++|+...+...+  
T Consensus       119 d~~t-------G~~------~W~~~~~~~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          119 NTSD-------GTV------AWQTKVAGEALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTT-------CCE------EEEEECSSCCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----
T ss_pred             ECCC-------CCE------EEEEeCCCceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceee
Confidence            9999       543      355432211  112345888888553       4479999999999999987553221  


Q ss_pred             ---cceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc--ccccccceeEEEEECCEEEEEe-CCeEE
Q 012294          324 ---SDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN--GKRKEGFGCKIECHANQVFCGK-GGEIE  397 (466)
Q Consensus       324 ---~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~--~~~~~~~~~~~~~~~~~lf~~~-~~~~~  397 (466)
                         +...+  .+..|| ++..+|.|+..|+++-+  --|..-....+...  ..... .....+..++.||+.. ++.|.
T Consensus       179 ~~~~~~~~--~~~~v~-~g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          179 RGESAPTT--AFGAAV-VGGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSD-VDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             CCCCCCEE--ETTEEE-ECCTTTEEEEEETTTCC--EEEEEECCC-----------C-CCCCCEEETTEEEEECTTSCEE
T ss_pred             cCCCCcEE--ECCEEE-EEcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccc-cCCCcEEECCEEEEEecCcEEE
Confidence               22223  345566 56778999999988633  34543222111000  00000 1233345688999875 56665


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeec--------cceEEEeccC
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKG--------QQTVEVWQSS  462 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~--------~~~~~vw~~~  462 (466)
                      .+..-     .       .+.+++..         -+....+..-++++|+.-.+        ..+-.+|+..
T Consensus       253 ~~d~~-----t-------G~~~w~~~---------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          253 ALDLR-----S-------GQIMWKRE---------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEETT-----T-------CCEEEEEC---------CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             EEECC-----C-------CcEEeecc---------CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            55431     1       23334431         12355667778888887654        3444667654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00082  Score=65.77  Aligned_cols=201  Identities=17%  Similarity=0.175  Sum_probs=111.6

Q ss_pred             EEEECC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccce
Q 012294          223 IGSSDK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       223 va~l~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      ++..++ .+++|+.     ...|..||..+.+++..+....         .+...+.|.+ ++.++++|+.+      +.
T Consensus       212 ~~~~~~~~~~~~~~-----~g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~l~~~~~d------~~  270 (425)
T 1r5m_A          212 VEWVDDDKFVIPGP-----KGAIFVYQITEKTPTGKLIGHH---------GPISVLEFND-TNKLLLSASDD------GT  270 (425)
T ss_dssp             CEEEETTEEEEECG-----GGCEEEEETTCSSCSEEECCCS---------SCEEEEEEET-TTTEEEEEETT------SC
T ss_pred             EEEcCCCEEEEEcC-----CCeEEEEEcCCCceeeeeccCC---------CceEEEEECC-CCCEEEEEcCC------CE
Confidence            344444 4444655     3578999999855444332111         1123455655 44566666644      47


Q ss_pred             EEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294          302 IKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI  381 (466)
Q Consensus       302 Ve~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~  381 (466)
                      |.+||.++++.+..+..+......+..++++  ++.+++.+|.|.+-|+++...      +..    ...  ....-..+
T Consensus       271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~------~~~----~~~--~~~~i~~~  336 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL------LAL----SIV--DGVPIFAG  336 (425)
T ss_dssp             EEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE------EEE----EEC--TTCCEEEE
T ss_pred             EEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE------eEe----ccc--CCccEEEE
Confidence            9999999999999998887778888899888  677888999999999987431      111    110  01111122


Q ss_pred             EEE--CCEEEEE-eCCeEEEeEeeeecC-CCCCCCCCcccceeec---cccCccccCCCC-ceEEEeee--cceeEEEee
Q 012294          382 ECH--ANQVFCG-KGGEIELWSEIVMGS-RKSREGGPLEERVFRK---NLMGRVTDMGGS-KITNLSFG--GNKMFVTRK  451 (466)
Q Consensus       382 ~~~--~~~lf~~-~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~---~~~~~~~~~~~~-~i~~~~~g--g~r~f~~~~  451 (466)
                      +..  +..|+++ .++.|.||.--.... .....+.  ....++.   ..+...+....+ .|+.+++-  |..|++.- 
T Consensus       337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  413 (425)
T 1r5m_A          337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN--RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-  413 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECHHHHC----------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCccceeeeecc--cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-
Confidence            222  3445544 567899998641110 0000000  0000000   011111112233 89999996  44555554 


Q ss_pred             ccceEEEecc
Q 012294          452 GQQTVEVWQS  461 (466)
Q Consensus       452 ~~~~~~vw~~  461 (466)
                      +...|-||+-
T Consensus       414 ~dg~i~iw~~  423 (425)
T 1r5m_A          414 SLQEGSVVAI  423 (425)
T ss_dssp             SSSCCEEEEC
T ss_pred             cCceEEEEee
Confidence            5567899984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.98  E-value=0.0063  Score=57.95  Aligned_cols=264  Identities=15%  Similarity=0.167  Sum_probs=139.6

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecC
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT  214 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va  214 (466)
                      ..+++...++.+  |.+..||... ........+-..+.++++. ++.+.+.|+  .+|     .+..||..+.+-  +.
T Consensus        31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~-----~i~vwd~~~~~~--~~  101 (312)
T 4ery_A           31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS--DDK-----TLKIWDVSSGKC--LK  101 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTCCE--EE
T ss_pred             ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC--CCC-----EEEEEECCCCcE--EE
Confidence            345666553433  3455555322 1111112222334444443 467778887  554     355666665431  11


Q ss_pred             CC---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEE
Q 012294          215 RS---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLAS  289 (466)
Q Consensus       215 ~M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~  289 (466)
                      .+   ...+.+++... +.+++ |+.+     ..|-.||..+.+.+..+....         .+...+.|.+ ++.++++
T Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~~  166 (312)
T 4ery_A          102 TLKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLKTLPAHS---------DPVSAVHFNR-DGSLIVS  166 (312)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEEEECCCS---------SCEEEEEECT-TSSEEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEEEecCCC---------CcEEEEEEcC-CCCEEEE
Confidence            11   22233234332 33444 6653     468999999855444332211         1122344543 5667778


Q ss_pred             eecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcc
Q 012294          290 GSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKM  368 (466)
Q Consensus       290 Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~  368 (466)
                      |+.||      .|.+||.++++.+.+.... ......+..++++..|+ ++..+|.+.+-|+++...      +..    
T Consensus       167 ~~~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~------~~~----  229 (312)
T 4ery_A          167 SSYDG------LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGKC------LKT----  229 (312)
T ss_dssp             EETTS------CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE-EEETTTEEEEEETTTTEE------EEE----
T ss_pred             EeCCC------cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEE-EEcCCCeEEEEECCCCcE------EEE----
Confidence            87544      7999999999988776544 33456677888877654 688999999999987431      111    


Q ss_pred             cccccccc--ceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--
Q 012294          369 VNGKRKEG--FGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--  442 (466)
Q Consensus       369 m~~~~~~~--~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--  442 (466)
                      ........  ........+++++++  .++.|.||.--    ..         .+.+ .+-+     ..+.|..+++-  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~----~~---------~~~~-~~~~-----h~~~v~~~~~~p~  290 (312)
T 4ery_A          230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ----TK---------EIVQ-KLQG-----HTDVVISTACHPT  290 (312)
T ss_dssp             ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT----TC---------CEEE-EECC-----CSSCEEEEEECSS
T ss_pred             EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC----Cc---------hhhh-hhhc-----cCCcEEEEeecCc
Confidence            11000010  111122234554444  56789999742    11         1111 1222     34568888874  


Q ss_pred             cceeEEEe-eccceEEEeccC
Q 012294          443 GNKMFVTR-KGQQTVEVWQSS  462 (466)
Q Consensus       443 g~r~f~~~-~~~~~~~vw~~~  462 (466)
                      |..|+.+- ++...|-||++.
T Consensus       291 ~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          291 ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSEEEEEECTTTCCEEEEECC
T ss_pred             CCceEEEEccCCccEEEecCC
Confidence            44455443 356779999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.94  E-value=0.00052  Score=68.61  Aligned_cols=186  Identities=18%  Similarity=0.179  Sum_probs=111.0

Q ss_pred             ecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      .+++.+.++++  |.+..||... ....+...+-..+.++.+ ++.+++.|+  .+|     .+..||.....- .+..+
T Consensus       143 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~--~dg-----~i~i~d~~~~~~-~~~~~  213 (401)
T 4aez_A          143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGS--RSG-----AIHHHDVRIANH-QIGTL  213 (401)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEE--TTS-----EEEEEETTSSSC-EEEEE
T ss_pred             CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEc--CCC-----CEEEEecccCcc-eeeEE
Confidence            34565553432  4556666332 222222233334445545 778888888  655     344566553221 11111


Q ss_pred             ---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEee
Q 012294          217 ---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGS  291 (466)
Q Consensus       217 ---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg  291 (466)
                         ...+.+++.. ++.+++ |+.     .+.|-.||..+.+++..+....         .+...+.|.+-++.|+++|+
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGN-----DNVVQIWDARSSIPKFTKTNHN---------AAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCSSEEEEECCCS---------SCCCEEEECTTSTTEEEEEC
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEccCCCCCccEEecCCc---------ceEEEEEECCCCCCEEEEec
Confidence               2333334554 444555 665     3578999999855444332111         12456677776777777775


Q ss_pred             cCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE-eeCceeEeecccc
Q 012294          292 HSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI-NSGEVSYMDLRKL  353 (466)
Q Consensus       292 ~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~-~~g~l~~~dlr~~  353 (466)
                        |.  ..+.|.+||.++++++.+.. +......+..++++..|+..++ .+|.|.+-|+++.
T Consensus       280 --gs--~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          280 --GT--MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             --CT--TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             --CC--CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence              21  35589999999999988885 3445678888999998876644 8999999999873

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.94  E-value=0.00025  Score=71.95  Aligned_cols=155  Identities=12%  Similarity=0.170  Sum_probs=98.7

Q ss_pred             eeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE--CCe-EEEEecCCCcCCCee
Q 012294          173 VDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS--DKH-LFVSFESGRRNSNSI  244 (466)
Q Consensus       173 v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l--~~~-IYaGg~~g~~~l~sV  244 (466)
                      |+++++.  ++.+.|.|+  .+|.     +..||..+.+-......   ...+.+++..  ++. |+.|+.     ..+|
T Consensus       122 V~~l~~~P~~~~~lasGs--~dg~-----i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~-----D~~v  189 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGS--KGGD-----IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-----EGTT  189 (435)
T ss_dssp             EEEEEECSSCTTCEEEEE--TTSC-----EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS-----SSCE
T ss_pred             EEEEEEeCCCCCEEEEEe--CCCE-----EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC-----CCEE
Confidence            4555554  567888998  7664     55566665543332222   3344446664  444 444655     3568


Q ss_pred             EEEecCCCCccccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc
Q 012294          245 MVYDINSLKPVNEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF  323 (466)
Q Consensus       245 E~YDp~t~~~~~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~  323 (466)
                      -+||.++       +....+ ..+. .......+.+. -++.++++|+.+|      +|.+||.+. +.++++..|.+.+
T Consensus       190 ~iwd~~~-------~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~g~~dg------~i~~wd~~~-~~~~~~~~h~~~v  253 (435)
T 4e54_B          190 RLQDFKG-------NILRVFASSDT-INIWFCSLDVS-ASSRMVVTGDNVG------NVILLNMDG-KELWNLRMHKKKV  253 (435)
T ss_dssp             EEEETTS-------CEEEEEECCSS-CSCCCCCEEEE-TTTTEEEEECSSS------BEEEEESSS-CBCCCSBCCSSCE
T ss_pred             EEeeccC-------CceeEEeccCC-CCccEEEEEEC-CCCCEEEEEeCCC------cEeeeccCc-ceeEEEecccceE
Confidence            8999887       221111 1111 11112233444 3666777787444      799999875 4577888888788


Q ss_pred             cceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          324 SDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       324 ~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      ..+...+++..++..|+.+|.+.+-|+|+...
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~  285 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRG  285 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccc
Confidence            88899999999998999999999999998663

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.93  E-value=0.0023  Score=62.74  Aligned_cols=287  Identities=14%  Similarity=0.213  Sum_probs=150.2

Q ss_pred             eeeecCCcEEEEcC--CceeeEecCCCC---CCC-ccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCc
Q 012294          137 IATTNYGTLHVSHG--SKITSFDWSMRK---KST-ILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLN  209 (466)
Q Consensus       137 ~~a~~~g~lyva~G--G~ve~YDW~~a~---m~~-~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~  209 (466)
                      ++-.+++.+.+..|  |.+..||.....   ... ...+-..+.++++- ++...|.|+  .++.     +..||..+..
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s--~D~~-----v~iw~~~~~~   94 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS--FDAT-----TCIWKKNQDD   94 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE--TTSC-----EEEEEECCC-
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE--CCCc-----EEEEEccCCC
Confidence            34456777664443  345555422110   000 01122334444443 567888888  6653     4455655555


Q ss_pred             eeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCC
Q 012294          210 WENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYN  284 (466)
Q Consensus       210 W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~  284 (466)
                      +..+..+   ...+.+++.. ++.+.+ |+.     ..+|-.||..+......+.   .+.+..   .....+.|.+ ++
T Consensus        95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~---~~~~h~---~~v~~~~~~p-~~  162 (345)
T 3fm0_A           95 FECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEEDEYECVS---VLNSHT---QDVKHVVWHP-SQ  162 (345)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECTTSCEEEEE---EECCCC---SCEEEEEECS-SS
T ss_pred             eEEEEEccCCCCCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCCCCeEEEE---EecCcC---CCeEEEEECC-CC
Confidence            4433333   2334445555 345555 665     3578899987621110000   000000   0123345554 45


Q ss_pred             eEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-------
Q 012294          285 LLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-------  355 (466)
Q Consensus       285 ~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-------  355 (466)
                      .++++|+.|+      +|.+||.++++  ++-+..+|......+..++++..| ..|+.+|.|.+-|++..+.       
T Consensus       163 ~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          163 ELLASASYDD------TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             SCEEEEETTS------CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             CEEEEEeCCC------cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEE-EEEeCCCeEEEeccccCCCCccceee
Confidence            5677777544      79999999986  234566777778888999988764 4788999999988765432       


Q ss_pred             --CCCeEEeccCCccccccccccceeEEEE-E-CCEEEE-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294          356 --SSEWICLGDGRKMVNGKRKEGFGCKIEC-H-ANQVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD  430 (466)
Q Consensus       356 --~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~-~~~lf~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  430 (466)
                        ...|.++..    +.+-....-+ .++. . ++.|.. +.++.|.||..-...  .      .....+.  +..+...
T Consensus       236 ~~~~~~~~~~~----~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~i~vw~~~~~~--~------~~~~~~~--~~~~~~~  300 (345)
T 3fm0_A          236 GSDPSWKCICT----LSGFHSRTIY-DIAWCQLTGALATACGDDAIRVFQEDPNS--D------PQQPTFS--LTAHLHQ  300 (345)
T ss_dssp             ---CEEEEEEE----ECSSCSSCEE-EEEECTTTCCEEEEETTSCEEEEEECTTS--C------TTSCCEE--EEEEETT
T ss_pred             ccCCccceeEE----ecCCCCCcEE-EEEEecCCCEEEEEeCCCeEEEEEeCCCC--C------cceeeEE--EEeeecc
Confidence              233554433    1110000011 1111 1 233333 367889999753100  0      0011110  1111111


Q ss_pred             CCCCceEEEeeec--ceeEEEeeccceEEEeccCCC
Q 012294          431 MGGSKITNLSFGG--NKMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       431 ~~~~~i~~~~~gg--~r~f~~~~~~~~~~vw~~~~~  464 (466)
                      ...+.|..++|--  .+++++=.+...|-+|+...+
T Consensus       301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            2456799999864  469999999999999987653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.93  E-value=0.00045  Score=66.25  Aligned_cols=147  Identities=10%  Similarity=0.113  Sum_probs=91.5

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCc--eeecCCC----CCceeEEEE-----ECCeEEE-EecCCCcCCCeeEEE
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRS----SSTVQAIGS-----SDKHLFV-SFESGRRNSNSIMVY  247 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W~~va~M----r~~~~Ava~-----l~~~IYa-Gg~~g~~~l~sVE~Y  247 (466)
                      ++..++.|+  .+|     .+..||..+.+  .......    ...+-+++.     -++.+++ |+.     ...|..|
T Consensus       128 ~~~~l~~~~--~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~  195 (357)
T 3i2n_A          128 GAPEIVTGS--RDG-----TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----NGDIKLF  195 (357)
T ss_dssp             CCCEEEEEE--TTS-----CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----TSEEEEE
T ss_pred             CccEEEEEe--CCC-----eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----CCeEEEE
Confidence            456777777  554     34455555443  2222111    112322331     2455555 655     3578999


Q ss_pred             ecCCCCccccccccccccCCceeecCcceeeEEee--CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc-----CCc
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS--YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK-----DEV  320 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~--~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~-----~~~  320 (466)
                      |..+.+.+....+..          ....+.|.+.  ++.++++|+.+      +.|.+||.++++.+..+.     ++.
T Consensus       196 d~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~  259 (357)
T 3i2n_A          196 DLRNMALRWETNIKN----------GVCSLEFDRKDISMNKLVATSLE------GKFHVFDMRTQHPTKGFASVSEKAHK  259 (357)
T ss_dssp             ETTTTEEEEEEECSS----------CEEEEEESCSSSSCCEEEEEEST------TEEEEEEEEEEETTTEEEEEEEECCS
T ss_pred             ECccCceeeecCCCC----------ceEEEEcCCCCCCCCEEEEECCC------CeEEEEeCcCCCcccceeeeccCCCc
Confidence            999844332222211          2234455552  55566666644      479999999988776655     777


Q ss_pred             ccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+..+..++++..++..|+.+|.+.+-|++...
T Consensus       260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            7788889999988788899999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.92  E-value=0.0025  Score=60.80  Aligned_cols=229  Identities=15%  Similarity=0.204  Sum_probs=126.5

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      ++...+.|+  .+|.     +..||..+.+....-.- ...+.+++... +.+.+ |+.     ...|..||..+.+.+.
T Consensus        34 ~~~~l~s~~--~dg~-----i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           34 NGEWLASSS--ADKL-----IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----DKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             TSSEEEEEE--TTSC-----EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEE
T ss_pred             CCCEEEEee--CCCe-----EEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----CCEEEEEECCCCcEEE
Confidence            456677777  5553     44555555544322221 33344355543 34444 665     3578999999854443


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceE
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      .+....     .    ....+.|.+ ++.++++|+.||      +|.+||.++++++.+...+.+....+..++++.. +
T Consensus       102 ~~~~~~-----~----~v~~~~~~~-~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l  164 (312)
T 4ery_A          102 TLKGHS-----N----YVFCCNFNP-QSNLIVSGSFDE------SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL-I  164 (312)
T ss_dssp             EEECCS-----S----CEEEEEECS-SSSEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-E
T ss_pred             EEcCCC-----C----CEEEEEEcC-CCCEEEEEeCCC------cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCE-E
Confidence            332111     0    112334444 455667777444      7999999999999999888777788888887765 4


Q ss_pred             EEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE-eCCeEEEeEeeeecCCCCCCCC
Q 012294          337 KVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~  413 (466)
                      ..|+.+|.|.+-|+++...      +..    +.. .....-..++..  +..|+++ .++.|.+|.--     .     
T Consensus       165 ~~~~~d~~i~~wd~~~~~~------~~~----~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~-----  223 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQC------LKT----LID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-----K-----  223 (312)
T ss_dssp             EEEETTSCEEEEETTTCCE------EEE----ECC-SSCCCEEEEEECTTSSEEEEEETTTEEEEEETT-----T-----
T ss_pred             EEEeCCCcEEEEECCCCce------eeE----Eec-cCCCceEEEEECCCCCEEEEEcCCCeEEEEECC-----C-----
Confidence            5888999999999987441      111    000 000011112221  2344443 57789999642     1     


Q ss_pred             CcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          414 PLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       414 ~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                         .+. .+.+.++... .......+..-+++++++=.+...|-||+...
T Consensus       224 ---~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          224 ---GKC-LKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             ---TEE-EEEECSSCCS-SSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             ---CcE-EEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence               011 1122222111 11122344445566667766777888998643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.90  E-value=0.0028  Score=60.99  Aligned_cols=241  Identities=9%  Similarity=0.148  Sum_probs=132.7

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-C--Ce-EEEEecCCCcCCCe
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-D--KH-LFVSFESGRRNSNS  243 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~--~~-IYaGg~~g~~~l~s  243 (466)
                      .+.++++- ++.++|.|+  .+|.     +..||....++..+..+   ...+-+++.. +  +. |++|+.+     ..
T Consensus        13 ~v~~~~~s~~~~~l~~~~--~dg~-----i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~   80 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCS--SDKT-----IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   80 (379)
T ss_dssp             CEEEEEECSSSSEEEEEE--TTSC-----EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SC
T ss_pred             cEEEEEEcCCCCEEEEEE--CCCc-----EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CE
Confidence            34444443 466778887  5553     45566655555444333   3344445554 2  34 4446653     46


Q ss_pred             eEEEecCCCC--ccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcC
Q 012294          244 IMVYDINSLK--PVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKD  318 (466)
Q Consensus       244 VE~YDp~t~~--~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~  318 (466)
                      |-.||..+.+  .+..+..      .   ..+...+.|.+.. +.++++|+.+      +.|.+||.++++  .......
T Consensus        81 v~iwd~~~~~~~~~~~~~~------~---~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAV------H---SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             EEEEEEETTEEEEEEEECC------C---SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC
T ss_pred             EEEEEcCCCceeEeeeecC------C---CcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC
Confidence            8899998821  1111110      0   0122345565542 5666777644      489999999984  2345556


Q ss_pred             CcccccceeeecC------------CCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC-
Q 012294          319 EVDCFSDVTVSDN------------LSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA-  385 (466)
Q Consensus       319 ~~d~~~~~~v~~~------------~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~-  385 (466)
                      +......+...+.            +..++.+|..+|.|.+-|++...  ..|..+..    +..  ..+.-..++... 
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----~~~--h~~~v~~~~~sp~  217 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLEST----LEG--HSDWVRDVAWSPT  217 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--TEEEEEEE----ECC--CSSCEEEEEECCC
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--cceeeEEE----Eec--ccCcEeEEEECCC
Confidence            6666677777774            45667789999999999999744  34554443    221  111122333332 


Q ss_pred             ---CEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEE
Q 012294          386 ---NQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEV  458 (466)
Q Consensus       386 ---~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~v  458 (466)
                         ++++++  .++.|.||.--    ..  + ......+++     .  ....+.|+.+++  -|..|++.-. ...|-|
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~----~~--~-~~~~~~~~~-----~--~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~i  282 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQD----NE--Q-GPWKKTLLK-----E--EKFPDVLWRASWSLSGNVLALSGG-DNKVTL  282 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEES----ST--T-SCCEEEESS-----S--SCCSSCEEEEEECSSSCCEEEEES-SSSEEE
T ss_pred             CCCCCeEEEEeCCCEEEEEeCC----CC--C-ccceeeeec-----c--ccCCCcEEEEEEcCCCCEEEEecC-CCcEEE
Confidence               444444  57789999753    11  0 011111111     1  124557888887  4555555544 567999


Q ss_pred             eccC
Q 012294          459 WQSS  462 (466)
Q Consensus       459 w~~~  462 (466)
                      |+..
T Consensus       283 w~~~  286 (379)
T 3jrp_A          283 WKEN  286 (379)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            9854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.88  E-value=0.0012  Score=63.24  Aligned_cols=235  Identities=13%  Similarity=0.176  Sum_probs=123.6

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCC-CCCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR-SSSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~-Mr~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      +.++++|+  .+|     .+..||..+.+=...-. -...+.+++..  ++.+++ |+.     ...|-.||..+.+.+.
T Consensus        85 ~~~l~~~~--~dg-----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           85 HPLLAVAG--SRG-----IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQTDTLVA  152 (366)
T ss_dssp             CEEEEEEE--TTC-----EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTTTEEEE
T ss_pred             CCEEEEec--CCC-----EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEeecCeEEE
Confidence            35778887  555     35566665543211101 12334445555  345555 665     3578999999855444


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC------------------
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD------------------  318 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~------------------  318 (466)
                      .+..-.      -.......+.|.+ ++.++++|+.|      +.|.+||.++++.+-+...                  
T Consensus       153 ~~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          153 IFGGVE------GHRDEVLSADYDL-LGEKIMSCGMD------HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EECSTT------SCSSCEEEEEECT-TSSEEEEEETT------SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             Eecccc------cccCceeEEEECC-CCCEEEEecCC------CCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            442100      0011234556665 45566777744      4799999999875543332                  


Q ss_pred             ----------CcccccceeeecCCCceEEEEEeeCceeEeeccccCC--------CCCeEEeccCCcccccccccc-cee
Q 012294          319 ----------EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--------SSEWICLGDGRKMVNGKRKEG-FGC  379 (466)
Q Consensus       319 ----------~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--------~~~W~~~~~~~~~m~~~~~~~-~~~  379 (466)
                                +.+.+..+..+   ..++..++.+|.|.+-|+++...        ......+..    ... .... ...
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~v~~~  291 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR----FDY-SQCDIWYM  291 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE----EEC-SSCCSSCC
T ss_pred             ccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc----ccc-cCCcEEEE
Confidence                      44444555555   33566788999999999988653        011111111    110 0000 122


Q ss_pred             EEEEE--CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccce
Q 012294          380 KIECH--ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQT  455 (466)
Q Consensus       380 ~~~~~--~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~  455 (466)
                      .+.-.  +..|++. .++.|.||.--    ..    ..+...+ + .+-++   ...+.|+.+++-- .+++++=.+...
T Consensus       292 ~~s~~~~~~~l~~~~~dg~i~vwd~~----~~----~~~~~~~-~-~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          292 RFSMDFWQKMLALGNQVGKLYVWDLE----VE----DPHKAKC-T-TLTHH---KCGAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             CCEECTTSSEEEEECTTSCEEEEECC----SS----SGGGCEE-E-EECCT---TCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEcCCCCCcEEEEEecCCcEEEEECC----CC----CCccccc-e-EEccc---ccCCceEEEEeCCCCCeEEEEeCCCE
Confidence            22222  4445544 56789999853    11    0111111 1 11111   1257899999853 245555566678


Q ss_pred             EEEecc
Q 012294          456 VEVWQS  461 (466)
Q Consensus       456 ~~vw~~  461 (466)
                      |-||+-
T Consensus       359 i~iwd~  364 (366)
T 3k26_A          359 IWRWDR  364 (366)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.0015  Score=64.32  Aligned_cols=159  Identities=13%  Similarity=0.164  Sum_probs=104.9

Q ss_pred             eeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-------CCceeEEEEECC--eEEE-EecCCC
Q 012294          171 TAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-------SSTVQAIGSSDK--HLFV-SFESGR  238 (466)
Q Consensus       171 ~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-------r~~~~Ava~l~~--~IYa-Gg~~g~  238 (466)
                      ..+.++.+..  +.+++.|+  .+|.     +..||..+.+-...-..       ...+.+++...+  .+++ |+.++.
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~--~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  238 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAG--SSNF-----ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN  238 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEES--SSSC-----EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred             CCeeEEEeCCCCCcEEEEEc--CCCC-----EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence            3455555554  46888888  5553     45566655442211111       122333555543  4555 665432


Q ss_pred             cCCCeeEEEecCCC-Ccccccc--ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          239 RNSNSIMVYDINSL-KPVNEIG--QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       239 ~~l~sVE~YDp~t~-~~~~~~~--~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                        ...|..||..+. +++..+.  +..          ....+.|.+.++.++++|+.|      ++|.+||.++++++.+
T Consensus       239 --~~~i~~~d~~~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          239 --DPSILIWDLRNANTPLQTLNQGHQK----------GILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             --SCCCCEEETTSTTSCSBCCCSCCSS----------CEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEE
T ss_pred             --CceEEEEeCCCCCCCcEEeecCccC----------ceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCcccee
Confidence              247899999983 4444443  211          234556666577778888754      4799999999999999


Q ss_pred             EcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          316 VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       316 ~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +..+......+..++++..++..++.+|.|.+-|++...
T Consensus       301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            988888888999999997778889999999999998865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.85  E-value=0.0038  Score=59.40  Aligned_cols=149  Identities=17%  Similarity=0.294  Sum_probs=89.4

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      .+.++++|+.|      ++|.+||.++++++.++.++.+.+..+++++++.. +..|+.+|.+.+-|+++...      +
T Consensus       184 ~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i~iwd~~~~~~------~  250 (340)
T 4aow_A          184 SNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNEGKH------L  250 (340)
T ss_dssp             SSCEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTCEEEEEETTTTEE------E
T ss_pred             CCcEEEEEcCC------CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEeCCCeEEEEEeccCce------e
Confidence            45677777744      47999999999999999988878888889988775 45788999999999987542      2


Q ss_pred             ccCCccccccccccceeEEEEE-CC-EEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEe
Q 012294          363 GDGRKMVNGKRKEGFGCKIECH-AN-QVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLS  440 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~~-~~-~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~  440 (466)
                      ..    +..  .. .-..++.. ++ .|.++.++.|.||.--     .    +.+-. .++............+.|+.++
T Consensus       251 ~~----~~~--~~-~v~~~~~~~~~~~~~~~~d~~i~iwd~~-----~----~~~~~-~~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          251 YT----LDG--GD-IINALCFSPNRYWLCAATGPSIKIWDLE-----G----KIIVD-ELKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             EE----EEC--SS-CEEEEEECSSSSEEEEEETTEEEEEETT-----T----TEEEE-EECCC-------CCCCCEEEEE
T ss_pred             ee----ecC--Cc-eEEeeecCCCCceeeccCCCEEEEEECC-----C----CeEEE-eccccceeeeccCCCCCEEEEE
Confidence            21    111  11 11112222 22 3445588899999642     0    00000 0111111111123566899998


Q ss_pred             ee--cceeEEEeeccceEEEeccC
Q 012294          441 FG--GNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       441 ~g--g~r~f~~~~~~~~~~vw~~~  462 (466)
                      |-  |..|+. =.+...|-||+..
T Consensus       314 ~s~dg~~l~s-gs~Dg~v~iW~~~  336 (340)
T 4aow_A          314 WSADGQTLFA-GYTDNLVRVWQVT  336 (340)
T ss_dssp             ECTTSSEEEE-EETTSCEEEEEEE
T ss_pred             ECCCCCEEEE-EeCCCEEEEEeCC
Confidence            85  445544 4455679999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.85  E-value=0.0025  Score=60.97  Aligned_cols=232  Identities=12%  Similarity=0.078  Sum_probs=133.4

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCc-c
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKP-V  255 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~-~  255 (466)
                      .+.+|+...  .+     ..+..+|+.+.+.....+. .... ++++. ++ .||+....    .+.|.+||+.+.+. .
T Consensus         9 ~~~~~v~~~--~~-----~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~----~~~i~~~d~~~~~~~~   76 (331)
T 3u4y_A            9 SNFGIVVEQ--HL-----RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF----CQTLVQIETQLEPPKV   76 (331)
T ss_dssp             CCEEEEEEG--GG-----TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST----TCEEEEEECSSSSCEE
T ss_pred             CCEEEEEec--CC-----CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC----CCeEEEEECCCCceeE
Confidence            456787776  33     3577888888877544333 2333 35554 34 48883321    34899999998433 2


Q ss_pred             ccccccccccCCceeecCcce-eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc
Q 012294          256 NEIGQNEIYGTDIESAIPATK-LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA  334 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k-~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~  334 (466)
                      ..+...          ..+.. +.+.+-+..||+..+ ++   ....|.+||+.+++++.....+. ...++++++++..
T Consensus        77 ~~~~~~----------~~~~~~~~~s~dg~~l~~~~~-~~---~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~  141 (331)
T 3u4y_A           77 VAIQEG----------QSSMADVDITPDDQFAVTVTG-LN---HPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNG  141 (331)
T ss_dssp             EEEEEC----------SSCCCCEEECTTSSEEEECCC-SS---SSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSC
T ss_pred             EecccC----------CCCccceEECCCCCEEEEecC-CC---CcccEEEEECCCCCeEEEEECCC-CccceEECCCCCE
Confidence            221110          11333 556666677883322 11   12379999999999887765443 3367889999999


Q ss_pred             eEEEEEeeCc-eeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEe--CCeEEEeEeeeecCCCC
Q 012294          335 IYKVGINSGE-VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGK--GGEIELWSEIVMGSRKS  409 (466)
Q Consensus       335 i~~v~~~~g~-l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~--~~~~~v~~~~~~~~~~~  409 (466)
                      ||..+..++. +.+.|+..-+.   -....  .+...   ....-..++..  +.+||++-  ++.|.||.--    .. 
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~---~~~~~--~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~----~~-  208 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGV---LFDTG--QEFIS---GGTRPFNITFTPDGNFAFVANLIGNSIGILETQ----NP-  208 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCC---EEEEE--EEEEC---SSSSEEEEEECTTSSEEEEEETTTTEEEEEECS----ST-
T ss_pred             EEEEecCCCceEEEEEECCCCc---EeecC--Ccccc---CCCCccceEECCCCCEEEEEeCCCCeEEEEECC----CC-
Confidence            9988887788 88888875331   11111  11111   11011223332  34588874  5679999732    11 


Q ss_pred             CCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          410 REGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       410 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                          .+...+ +.     .  ..++.+..+++-  |.+||++....+.|-||+...
T Consensus       209 ----~~~~~~-~~-----~--~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          209 ----ENITLL-NA-----V--GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             ----TSCEEE-EE-----E--ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             ----ccccee-ee-----c--cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence                110001 11     0  123445566665  778999988888899998653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.84  E-value=0.0025  Score=62.21  Aligned_cols=223  Identities=12%  Similarity=0.204  Sum_probs=128.0

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      ++.+.+.|+  .++     ++..+|..+.+-...-.. ...+.+++.. ++...+ |+.     ...|..||..+.+...
T Consensus        91 ~~~~l~s~s--~D~-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           91 TLPIAASSS--LDA-----HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGVESGKKEY  158 (321)
T ss_dssp             SSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEETTTCSEEE
T ss_pred             CCCEEEEEe--CCC-----cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEcCCCceeE
Confidence            345677777  555     344556555432111111 1112123444 344444 654     4578999998833222


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceE
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      .+....     .    ....+.|.+ ++.++++|+.||      .|.+||.++++++.++..+......+..++++..| 
T Consensus       159 ~~~~~~-----~----~v~~~~~sp-dg~~lasg~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l-  221 (321)
T 3ow8_A          159 SLDTRG-----K----FILSIAYSP-DGKYLASGAIDG------IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL-  221 (321)
T ss_dssp             EEECSS-----S----CEEEEEECT-TSSEEEEEETTS------CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE-
T ss_pred             EecCCC-----c----eEEEEEECC-CCCEEEEEcCCC------eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE-
Confidence            221110     0    112334443 666777887544      79999999999999998887778888999987754 


Q ss_pred             EEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CC-EEEE-EeCCeEEEeEeeeecCCCCCCCC
Q 012294          337 KVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-AN-QVFC-GKGGEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~-~lf~-~~~~~~~v~~~~~~~~~~~~~~~  413 (466)
                      ..|+.+|.+.+-|++..+.      +..    +..  ..+.=..++.. ++ .|++ +.++.|.||.--     .     
T Consensus       222 ~s~s~dg~i~iwd~~~~~~------~~~----~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~-----~-----  279 (321)
T 3ow8_A          222 VTASDDGYIKIYDVQHANL------AGT----LSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG-----T-----  279 (321)
T ss_dssp             EEECTTSCEEEEETTTCCE------EEE----ECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----T-----
T ss_pred             EEEcCCCeEEEEECCCcce------eEE----EcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-----C-----
Confidence            4788999999999987441      111    111  11011122222 23 3433 367789999642     1     


Q ss_pred             CcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccC
Q 012294          414 PLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       414 ~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~  462 (466)
                         .+. -+.+.+     ..+.|..+++-.| +++++=.+...|-||+.|
T Consensus       280 ---~~~-~~~~~~-----h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          280 ---RTC-VHTFFD-----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ---TEE-EEEECC-----CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ---CEE-EEEEcC-----CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence               111 112222     3567999998654 456677777889999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.84  E-value=0.0061  Score=61.42  Aligned_cols=245  Identities=13%  Similarity=0.196  Sum_probs=134.3

Q ss_pred             eeeeeecccC-CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEE
Q 012294          171 TAVDSLLALS-PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMV  246 (466)
Q Consensus       171 ~~v~sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~  246 (466)
                      ..+.++++.. +.+++.|+  .+|     ++..||..+.+-...-.. ...+.+++.. ++.+.+ |+.+     .+|-.
T Consensus       109 ~~V~~~~~~p~~~~l~s~s--~Dg-----~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i~i  176 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSAS--EDA-----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-----MTIKL  176 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEE--SSS-----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-----SCCCE
T ss_pred             CcEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-----CeEEE
Confidence            4455554443 56778887  555     355667665542221111 2334435554 345555 6653     46789


Q ss_pred             EecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccce
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDV  326 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~  326 (466)
                      ||..+.+.+..+...     ..    ....+.|.+ ++..+++|+.|      ++|.+||.++++++-++.+|.+....+
T Consensus       177 wd~~~~~~~~~~~~h-----~~----~V~~v~~~p-~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          177 WDFQGFECIRTMHGH-----DH----NVSSVSIMP-NGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             EETTSSCEEECCCCC-----SS----CEEEEEECS-SSSEEEEEETT------SEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EeCCCCceeEEEcCC-----CC----CEEEEEEeC-CCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            999885554444221     11    123445555 44455677744      489999999999999998887777777


Q ss_pred             eeecCCCceEEEEEeeCceeEeeccccCC------CCCeE---EeccCCccccccccccceeEEEEE-CCEEEE-EeCCe
Q 012294          327 TVSDNLSAIYKVGINSGEVSYMDLRKLGD------SSEWI---CLGDGRKMVNGKRKEGFGCKIECH-ANQVFC-GKGGE  395 (466)
Q Consensus       327 ~v~~~~~~i~~v~~~~g~l~~~dlr~~~~------~~~W~---~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~-~~~~~  395 (466)
                      ...+++.. +..|+.+|.+.+-|+++.+.      +...+   .+.+...........+........ +..|.+ +.++.
T Consensus       241 ~~~~~g~~-l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          241 RPNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             EECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             EECCCCCE-EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            77777664 55888999999999987542      11111   122211100000000000001111 223333 36778


Q ss_pred             EEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee-cceeEEEeeccceEEEeccCC
Q 012294          396 IELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG-GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       396 ~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~~~~~~vw~~~~  463 (466)
                      |.+|.--     .        ... -+.+.+     ..+.|+.++|- .++++++=.+...|-||+...
T Consensus       320 i~iwd~~-----~--------~~~-~~~~~~-----h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          320 IKMWDVS-----T--------GMC-LMTLVG-----HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             EEEEETT-----T--------TEE-EEEEEC-----CSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             EEEEECC-----C--------Cce-EEEEEC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            9999642     1        011 112223     34568888774 235556666777899998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.82  E-value=0.012  Score=56.50  Aligned_cols=232  Identities=16%  Similarity=0.181  Sum_probs=130.7

Q ss_pred             eeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEEC-Ce-EEEEecCCCcCCCeeEEEe
Q 012294          173 VDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSD-KH-LFVSFESGRRNSNSIMVYD  248 (466)
Q Consensus       173 v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~~-IYaGg~~g~~~l~sVE~YD  248 (466)
                      +.++++- ++.+.+.|+  .+|     ++..||..+..-...-.. ...+.+++... +. |++|+.     ..+|-.||
T Consensus        16 V~~~~fsp~~~~l~s~~--~dg-----~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-----d~~i~vwd   83 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTL--YSG-----RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFRIRVFN   83 (304)
T ss_dssp             EEEEEECSSSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEE
T ss_pred             eEEEEECCCCCEEEEEc--CCC-----cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-----CCEEEEEE
Confidence            3333333 456777777  665     355666665432111111 22233344443 33 444665     45789999


Q ss_pred             cCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCccccccee
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVT  327 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~  327 (466)
                      ..+.+.+..+..     +..    ....+.+.+ ++.++++|+.||      +|.+||.+++ .+.-.+.+|......++
T Consensus        84 ~~~~~~~~~~~~-----h~~----~v~~~~~~~-~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           84 YNTGEKVVDFEA-----HPD----YIRSIAVHP-TKPYVLSGSDDL------TVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             TTTCCEEEEEEC-----CSS----CEEEEEECS-SSSEEEEEETTS------CEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             CCCCcEEEEEeC-----CCC----cEEEEEEcC-CCCEEEEECCCC------eEEEEECCCCcchhhhhcccCCcEEEEE
Confidence            998443333221     111    122344544 455667777444      7999999988 44456667777777888


Q ss_pred             eecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee-EEEEE---CCEEEE--EeCCeEEEeEe
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC-KIECH---ANQVFC--GKGGEIELWSE  401 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~-~~~~~---~~~lf~--~~~~~~~v~~~  401 (466)
                      .++.+..++..|+.+|.+.+-|++....  ... +..      .  .. ... .+..+   ++++++  +.++.|.+|.-
T Consensus       148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~-~~~------~--~~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~  215 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFT-LTT------G--QE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (304)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEETTCSSC--SEE-EEC------C--CT-TCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCc--cce-ecc------C--Cc-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence            8887777788999999999999987442  111 111      0  11 111 12221   333333  36788999964


Q ss_pred             eeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccCC
Q 012294          402 IVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~  463 (466)
                      -     .        .+. -+.+-+     ..+.|+.++|--+ +++++=.+...|.||+...
T Consensus       216 ~-----~--------~~~-~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          216 Q-----T--------KSC-VATLEG-----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             T-----T--------TEE-EEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             C-----C--------Ccc-ceeeCC-----CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            2     1        011 111222     3456887777544 4677777778899998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.82  E-value=0.00087  Score=67.95  Aligned_cols=253  Identities=15%  Similarity=0.214  Sum_probs=140.6

Q ss_pred             eeeeeecccC--CcEEEEecccCCCceeccceeeeeCCC--------CceeecCCC---CCceeEEEEECC-e-EEE-Ee
Q 012294          171 TAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKET--------LNWENVTRS---SSTVQAIGSSDK-H-LFV-SF  234 (466)
Q Consensus       171 ~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t--------~~W~~va~M---r~~~~Ava~l~~-~-IYa-Gg  234 (466)
                      +.+.++++..  +.++|+|+  .+|.     +..||..+        .+......+   ...+.+++...+ . +++ |+
T Consensus       129 ~~v~~l~~~p~~~~~lat~~--~dg~-----V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKT--PSSD-----VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEEC--SSSC-----EEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             CcEEEEEECCCCCcEEEEEC--CCCc-----EEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            4455555664  46788887  5553     34444432        111111111   222223455432 2 444 65


Q ss_pred             cCCCcCCCeeEEEecCCCCcccc-ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC---
Q 012294          235 ESGRRNSNSIMVYDINSLKPVNE-IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG---  310 (466)
Q Consensus       235 ~~g~~~l~sVE~YDp~t~~~~~~-~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---  310 (466)
                      .     ..+|-.||..+.+.... +.....|.+.   ......+.|.+.++.++++|+.+      +.|.+||.+++   
T Consensus       202 ~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~h---~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~~~~~  267 (430)
T 2xyi_A          202 D-----DHTICLWDINATPKEHRVIDAKNIFTGH---TAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRNNNTS  267 (430)
T ss_dssp             T-----TSCEEEEETTSCCBGGGEEECSEEECCC---SSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCSCSS
T ss_pred             C-----CCeEEEEeCCCCCCCCceeccceeecCC---CCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCCCCCC
Confidence            4     35688999987211100 0000111000   01133456777678888888744      48999999998   


Q ss_pred             eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEE
Q 012294          311 NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQV  388 (466)
Q Consensus       311 ~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~l  388 (466)
                      +.+.....+......+...+++..++.+|+.+|.|.+-|+|....  +   +..    +..  ..+.-..|+.+  +..+
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~---~~~----~~~--h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--K---LHS----FES--HKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--C---SEE----EEC--CSSCEEEEEECSSCTTE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--C---eEE----eec--CCCCEEEEEECCCCCCE
Confidence            577888888777788889999999999999999999999998552  1   111    110  11112223332  3455


Q ss_pred             EEE--eCCeEEEeEeeeecCCCCCCC--CCcccceeeccccCccccCCCCceEEEeeecc--eeEEEeeccceEEEeccC
Q 012294          389 FCG--KGGEIELWSEIVMGSRKSREG--GPLEERVFRKNLMGRVTDMGGSKITNLSFGGN--KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       389 f~~--~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~  462 (466)
                      +++  .++.|.||.--....+...+.  .+..+.++.  +-     ..++.|+++++--+  .++++=.+.+.|.||+..
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-----~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI--HG-----GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE--CC-----CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE--cC-----CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            554  467899997542111100000  000122211  11     13557999998644  488888888999999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.79  E-value=0.0027  Score=62.35  Aligned_cols=135  Identities=14%  Similarity=0.069  Sum_probs=88.5

Q ss_pred             ccceeeeeCCCCceeecC-------CCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCce
Q 012294          197 LDLENGYVKETLNWENVT-------RSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIE  269 (466)
Q Consensus       197 l~svE~ydp~t~~W~~va-------~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w  269 (466)
                      -.++..+||.+.++..--       ++......++..++++|+...    ..+.|.++|+.|.+.+.++..     +.  
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~----~~~~v~viD~~t~~~~~~i~~-----~~--   84 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN----NSHVIFAIDINTFKEVGRITG-----FT--   84 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG----GGTEEEEEETTTCCEEEEEEC-----CS--
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc----CCCEEEEEECcccEEEEEcCC-----CC--
Confidence            357888999998875311       221223347788999999332    146899999999665555521     00  


Q ss_pred             eecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc-----ccccceeeecCCCceEEEEE-eeC
Q 012294          270 SAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV-----DCFSDVTVSDNLSAIYKVGI-NSG  343 (466)
Q Consensus       270 ~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~-----d~~~~~~v~~~~~~i~~v~~-~~g  343 (466)
                         .|..+... -++.|||+..+      .+.|.+||+.+++++++..-..     ..-..+++  ++..||+..- .++
T Consensus        85 ---~p~~i~~~-~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~  152 (328)
T 3dsm_A           85 ---SPRYIHFL-SDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQN  152 (328)
T ss_dssp             ---SEEEEEEE-ETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCC
T ss_pred             ---CCcEEEEe-CCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCC
Confidence               12222221 46799999863      4589999999999888764221     02234555  7888997765 588


Q ss_pred             ceeEeeccccC
Q 012294          344 EVSYMDLRKLG  354 (466)
Q Consensus       344 ~l~~~dlr~~~  354 (466)
                      .|.+.|+.+..
T Consensus       153 ~v~viD~~t~~  163 (328)
T 3dsm_A          153 RILKIDTETDK  163 (328)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCe
Confidence            99999998744

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.79  E-value=0.0023  Score=63.58  Aligned_cols=202  Identities=14%  Similarity=0.188  Sum_probs=119.6

Q ss_pred             ceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccc-cccCCceeecCcceeeEEeeCCeEEEEeecCC
Q 012294          219 TVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNE-IYGTDIESAIPATKLRWVSSYNLLLASGSHSD  294 (466)
Q Consensus       219 ~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g  294 (466)
                      .+.+++..  ++.+++ |+.     ..+|..||..+.+...+..+.. .+.+..   .....+.|.+.+..++++|+.||
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSE-----DCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEET-----TSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEETTS
T ss_pred             CEEEEEeCCCCCCEEEEEeC-----CCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEcCCC
Confidence            34445555  455666 665     3578999998842221111111 010010   12334566665546777777544


Q ss_pred             CCcccceEEEEeCCCCeeeeEE--cCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccc-cc
Q 012294          295 ISKVTGNIKFWDIRSGNVAWEV--KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMV-NG  371 (466)
Q Consensus       295 ~~~~~~sVe~yDprt~~~vW~~--~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m-~~  371 (466)
                            +|.+||.++++++.+.  ..+.+....+..++++..|+ +++.+|.|.+-|+++...      +..    + ..
T Consensus       155 ------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~------~~~----~~~~  217 (402)
T 2aq5_A          155 ------VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC-TSCRDKRVRVIEPRKGTV------VAE----KDRP  217 (402)
T ss_dssp             ------CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE-EEETTSEEEEEETTTTEE------EEE----EECS
T ss_pred             ------EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE-EEecCCcEEEEeCCCCce------eee----eccC
Confidence                  7999999999999998  77887888889999777644 788999999999998441      211    1 10


Q ss_pred             ccccc-ceeEEEEECCEEEEE-----eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--c
Q 012294          372 KRKEG-FGCKIECHANQVFCG-----KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--G  443 (466)
Q Consensus       372 ~~~~~-~~~~~~~~~~~lf~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g  443 (466)
                       .... .....-.-+++++++     .++.|.+|.--    ..     ...-..+.   +     ...+.|..+++-  |
T Consensus       218 -~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~----~~-----~~~~~~~~---~-----~~~~~v~~~~~s~~~  279 (402)
T 2aq5_A          218 -HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK----HL-----EEPLSLQE---L-----DTSSGVLLPFFDPDT  279 (402)
T ss_dssp             -SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT----BC-----SSCSEEEE---C-----CCCSSCEEEEEETTT
T ss_pred             -CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc----cc-----cCCceEEe---c-----cCCCceeEEEEcCCC
Confidence             0110 112222235666664     57889999753    11     00011111   1     123347766664  7


Q ss_pred             ceeEEEeeccceEEEeccCC
Q 012294          444 NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       444 ~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ..||++=.+...|-||+...
T Consensus       280 ~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          280 NIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             TEEEEEETTCSCEEEEEECS
T ss_pred             CEEEEEEcCCCeEEEEEecC
Confidence            78888887778899998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.77  E-value=0.0057  Score=59.24  Aligned_cols=229  Identities=13%  Similarity=0.181  Sum_probs=128.8

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKP  254 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~  254 (466)
                      ++...+.|+  .++     ++..||..+.+=  +..+   ...+.+++... +.+.+ |+.     ..+|-.||......
T Consensus        76 dg~~l~s~s--~D~-----~v~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~vwd~~~~~~  141 (319)
T 3frx_A           76 DGAYALSAS--WDK-----TLRLWDVATGET--YQRFVGHKSDVMSVDIDKKASMIISGSR-----DKTIKVWTIKGQCL  141 (319)
T ss_dssp             TSSEEEEEE--TTS-----EEEEEETTTTEE--EEEEECCSSCEEEEEECTTSCEEEEEET-----TSCEEEEETTSCEE
T ss_pred             CCCEEEEEe--CCC-----EEEEEECCCCCe--eEEEccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeE
Confidence            566777777  654     455667666542  1111   23343344443 34445 665     35788999865111


Q ss_pred             cccccccccccCCceeecCcceeeEEe-----eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeee
Q 012294          255 VNEIGQNEIYGTDIESAIPATKLRWVS-----SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVS  329 (466)
Q Consensus       255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~-----~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~  329 (466)
                      ..-.++      ..+    ...+.+.+     .++.++++|+.|+      +|.+||.++.+++-++.+|......++++
T Consensus       142 ~~~~~h------~~~----v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~h~~~v~~~~~s  205 (319)
T 3frx_A          142 ATLLGH------NDW----VSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFIGHNSNINTLTAS  205 (319)
T ss_dssp             EEECCC------SSC----EEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEECCCCSCEEEEEEC
T ss_pred             EEEecc------CCc----EEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeecCCCCcEEEEEEc
Confidence            111111      111    11233332     2455777887544      79999999999988998898788888999


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEeCCeEEEeEeeeecCCC
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGKGGEIELWSEIVMGSRK  408 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~  408 (466)
                      +++..| ..|+.+|.+.+-|+++...      +..    +..  ... ......--+..|.++.++.+.||+--    ..
T Consensus       206 p~g~~l-~s~~~dg~i~iwd~~~~~~------~~~----~~~--~~~v~~~~~sp~~~~la~~~~~~i~v~~~~----~~  268 (319)
T 3frx_A          206 PDGTLI-ASAGKDGEIMLWNLAAKKA------MYT----LSA--QDEVFSLAFSPNRYWLAAATATGIKVFSLD----PQ  268 (319)
T ss_dssp             TTSSEE-EEEETTCEEEEEETTTTEE------EEE----EEC--CSCEEEEEECSSSSEEEEEETTEEEEEEET----TE
T ss_pred             CCCCEE-EEEeCCCeEEEEECCCCcE------EEE----ecC--CCcEEEEEEcCCCCEEEEEcCCCcEEEEeC----cC
Confidence            988764 4788999999999987431      111    110  111 11222222456677788899999752    00


Q ss_pred             CCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccC
Q 012294          409 SREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       409 ~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~  462 (466)
                           .+ -..+|..+.+..+. ..+.|..++|--| +++++=.+...|.||+..
T Consensus       269 -----~~-~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          269 -----YL-VDDLRPEFAGYSKA-AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             -----EE-EEEECCCCTTCCGG-GCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             -----ee-eeccCccccccccC-cCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence                 00 01123322222111 2345777777533 455555666789999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.0042  Score=58.21  Aligned_cols=217  Identities=13%  Similarity=0.120  Sum_probs=117.8

Q ss_pred             eecCCcEEEEcC--CceeeEe-cCC---CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceee
Q 012294          139 TTNYGTLHVSHG--SKITSFD-WSM---RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWEN  212 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YD-W~~---a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~  212 (466)
                      ..+++.+.++.+  |.+..|| |..   ........+-..+.++.+ ++..++.|+  .+|.     +..||.....+..
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~--~d~~-----i~~~d~~~~~~~~  138 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGS--WDKT-----AKVWKEGSLVYNL  138 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEE--TTSE-----EEEEETTEEEEEE
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEe--CCCC-----EEEEcCCcEEEec
Confidence            344555553433  3455566 433   112222233344555555 777888888  5553     4445533322222


Q ss_pred             cCCCCCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEE
Q 012294          213 VTRSSSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLAS  289 (466)
Q Consensus       213 va~Mr~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~  289 (466)
                      ... ...+.+++..  ++..++ |+.     ...|..||..+  ++..+..      .  .......+.|.+ ++. +++
T Consensus       139 ~~~-~~~v~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~--~~~~~~~------~--~~~~i~~~~~~~-~~~-~~~  200 (313)
T 3odt_A          139 QAH-NASVWDAKVVSFSENKFLTASA-----DKTIKLWQNDK--VIKTFSG------I--HNDVVRHLAVVD-DGH-FIS  200 (313)
T ss_dssp             ECC-SSCEEEEEEEETTTTEEEEEET-----TSCEEEEETTE--EEEEECS------S--CSSCEEEEEEEE-TTE-EEE
T ss_pred             ccC-CCceeEEEEccCCCCEEEEEEC-----CCCEEEEecCc--eEEEEec------c--CcccEEEEEEcC-CCe-EEE
Confidence            211 1222223333  444444 655     34688999544  1111110      0  001123344543 455 667


Q ss_pred             eecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccc
Q 012294          290 GSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMV  369 (466)
Q Consensus       290 Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m  369 (466)
                      |+.+      +.|.+||.++++++.++..+......+..++++ . +..++.+|.|.+-|+++...      +..    +
T Consensus       201 ~~~d------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~------~~~----~  262 (313)
T 3odt_A          201 CSND------GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSL------KQV----I  262 (313)
T ss_dssp             EETT------SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCE------EEE----E
T ss_pred             ccCC------CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCce------eEE----E
Confidence            7744      479999999999999998888788888899888 3 55888999999999987541      111    1


Q ss_pred             cccccccceeEEEEE-CCEEE-EEeCCeEEEeEe
Q 012294          370 NGKRKEGFGCKIECH-ANQVF-CGKGGEIELWSE  401 (466)
Q Consensus       370 ~~~~~~~~~~~~~~~-~~~lf-~~~~~~~~v~~~  401 (466)
                      ..  ..+.-..++.. +++++ ++.++.|.+|.-
T Consensus       263 ~~--~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          263 TL--PAISIWSVDCMSNGDIIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EC--SSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred             ec--cCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence            11  11111223322 33444 457889999975

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=0.0013  Score=63.50  Aligned_cols=187  Identities=13%  Similarity=0.004  Sum_probs=119.2

Q ss_pred             ccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          178 ALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      +.++.||.-.|  ..|.   +++..+|+.+.+=....++  +....+++..+++||+.-.    ..+.+-+||+.|++.+
T Consensus        28 ~~~~~LyestG--~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw----~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           28 YLRGHLYESTG--ETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW----RNHEGFVYDLATLTPR   98 (243)
T ss_dssp             EETTEEEEEEC--CTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES----SSSEEEEEETTTTEEE
T ss_pred             EECCEEEEECC--CCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe----eCCEEEEEECCcCcEE
Confidence            36788999988  6554   4677889998875444444  3344458999999999322    2578999999998888


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc--CCcccccce-eeecCC
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK--DEVDCFSDV-TVSDNL  332 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~--~~~d~~~~~-~v~~~~  332 (466)
                      .++..    ++.+|...        .-++.||++-|       .+.|..+||.|.+++-+..  ..+..+..+ .+...+
T Consensus        99 ~ti~~----~~~Gwglt--------~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~  159 (243)
T 3mbr_X           99 ARFRY----PGEGWALT--------SDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN  159 (243)
T ss_dssp             EEEEC----SSCCCEEE--------ECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EEEeC----CCCceEEe--------eCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC
Confidence            77765    33556542        23678898855       3479999999998774442  111111111 223346


Q ss_pred             CceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccc-ccccc-ceeEEEEE--CCEEEEEeC
Q 012294          333 SAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNG-KRKEG-FGCKIECH--ANQVFCGKG  393 (466)
Q Consensus       333 ~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~-~~~~~-~~~~~~~~--~~~lf~~~~  393 (466)
                      +.||+-+-++++|.++|.++.. --.|+.++.-.+.... ..+.+ .=-.||..  .++||++-.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~-V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGK-VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCB-EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEECCCCC-EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            7799555589999999999966 3456776652211100 00122 23456665  689999865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=0.004  Score=60.14  Aligned_cols=149  Identities=12%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             eEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          221 QAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       221 ~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      .++...++.||. .|..|   .++|-++|+.|.+.+..+.-..          .+-..+....++.||++...      .
T Consensus        24 qGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~----------~~fgeGi~~~~~~ly~ltw~------~   84 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPP----------PYFGAGIVAWRDRLIQLTWR------N   84 (243)
T ss_dssp             EEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCT----------TCCEEEEEEETTEEEEEESS------S
T ss_pred             ccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCC----------CcceeEEEEeCCEEEEEEee------C
Confidence            348899999999 55544   4689999999954444332211          01112344568999999863      4


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      +.+-.||+.|.+++-++.-+.   .+.+++.++..||+--+ ++.|++.|-.++.-... +.+.+..+.+     + .=-
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~---~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~-I~V~~~g~~~-----~-~lN  153 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPG---EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGS-IKVTAGGRPL-----D-NLN  153 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSS---CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEE-EECEETTEEC-----C-CEE
T ss_pred             CEEEEEECCcCcEEEEEeCCC---CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEE-EEEccCCccc-----c-cce
Confidence            589999999999998887655   56788889999998775 89999999887652100 2333311111     1 223


Q ss_pred             EEEEECCEEEEEe--CCeEEEe
Q 012294          380 KIECHANQVFCGK--GGEIELW  399 (466)
Q Consensus       380 ~~~~~~~~lf~~~--~~~~~v~  399 (466)
                      .|++.+|+||+.-  .+.|.|-
T Consensus       154 eLe~~~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          154 ELEWVNGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEEEETTEEEEEETTTTEEEEE
T ss_pred             eeEEeCCEEEEEECCCCeEEEE
Confidence            5788899999883  5555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.75  E-value=0.0032  Score=61.38  Aligned_cols=227  Identities=13%  Similarity=0.023  Sum_probs=114.8

Q ss_pred             eeecCCcEEEEcC---CceeeEecCCC---CCCCccccceeeeeecccC-CcEEEEecccCCCceeccceeeeeCCCCc-
Q 012294          138 ATTNYGTLHVSHG---SKITSFDWSMR---KKSTILTHFTAVDSLLALS-PGVAAAGATDFSGLQVLDLENGYVKETLN-  209 (466)
Q Consensus       138 ~a~~~g~lyva~G---G~ve~YDW~~a---~m~~~R~~~~~v~sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t~~-  209 (466)
                      ...+++.+. +.|   |.+..||....   ...+...+-..+.++++.. +.+++.|+  .++     ++..||..+.+ 
T Consensus        18 ~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~d~-----~v~vwd~~~~~~   89 (377)
T 3dwl_C           18 AFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS--QDR-----NAYVYEKRPDGT   89 (377)
T ss_dssp             EECSSSSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE--TTS-----SEEEC------C
T ss_pred             EECCCCCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe--CCC-----eEEEEEcCCCCc
Confidence            455667666 444   34555552211   1122222333455555543 56777777  554     35566666655 


Q ss_pred             eeecCCC---CCceeEEEEE-CCe-EEEEecCCCcCCCeeEEEecCCCC---ccccccccccccCCceeecCcceeeEEe
Q 012294          210 WENVTRS---SSTVQAIGSS-DKH-LFVSFESGRRNSNSIMVYDINSLK---PVNEIGQNEIYGTDIESAIPATKLRWVS  281 (466)
Q Consensus       210 W~~va~M---r~~~~Ava~l-~~~-IYaGg~~g~~~l~sVE~YDp~t~~---~~~~~~~~~~~~~~~w~~~~~~k~~~~~  281 (466)
                      |.....+   ...+.+++.. ++. |++|+.     ...|..||..+.+   ....+..     +.   ......+.|.+
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~-----~h---~~~v~~~~~~~  156 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQENDWWVSKHLKR-----PL---RSTILSLDWHP  156 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEES-----SSCEEECCC-----CCCCEEECS-----SC---CSCEEEEEECT
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEec-----CCeEEEEEECCcccceeeeEeec-----cc---CCCeEEEEEcC
Confidence            4443333   2333334444 344 444655     3468889988732   1222221     00   01223445554


Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCC------------------CCeeeeEEcCCcccccceeeecCCCceEEEEEeeC
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIR------------------SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSG  343 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDpr------------------t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g  343 (466)
                       ++.++++|+.|      ++|.+||.+                  +++++-++ .+......+..++++..| ..|+.+|
T Consensus       157 -~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l-~~~~~d~  227 (377)
T 3dwl_C          157 -NNVLLAAGCAD------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL-AYAGHDS  227 (377)
T ss_dssp             -TSSEEEEEESS------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE-EEEETTT
T ss_pred             -CCCEEEEEeCC------CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE-EEEeCCC
Confidence             56677777754      479999985                  45566666 677777888899988754 4778999


Q ss_pred             ceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEE-EeCCeEEEeEee
Q 012294          344 EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFC-GKGGEIELWSEI  402 (466)
Q Consensus       344 ~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~-~~~~~~~v~~~~  402 (466)
                      .|.+-|+++.+  .+...+..    +.. .... ..... ..+|++++ +.++.+-+|...
T Consensus       228 ~i~iwd~~~~~--~~~~~~~~----~~~-~~~~v~~~~~-s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          228 SVTIAYPSAPE--QPPRALIT----VKL-SQLPLRSLLW-ANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEC-CEECSTT--SCEEECCC----EEC-SSSCEEEEEE-EETTEEEEEESSSSEEEECCC
T ss_pred             cEEEEECCCCC--CcceeeEe----ecC-CCCceEEEEE-cCCCCEEEEEcCCcEEEEEeC
Confidence            99999998854  22222222    221 0111 11222 22455444 466677788765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.75  E-value=0.0014  Score=66.37  Aligned_cols=116  Identities=20%  Similarity=0.321  Sum_probs=84.0

Q ss_pred             ceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCC---CccccccccccccCCceeecCcceeeEEeeCCeEEEEeec
Q 012294          219 TVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSL---KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSH  292 (466)
Q Consensus       219 ~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~---~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~  292 (466)
                      .+.+++..  ++.+++ |+.     ...|-.||..+.   +++..+..     ..    .+...+.|.+.+..++++|+.
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~-----~~----~~v~~i~~~p~~~~~l~tg~~  298 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVAD-----DQKLMIWDTRNNNTSKPSHTVDA-----HT----AEVNCLSFNPYSEFILATGSA  298 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEET-----TSEEEEEETTCSCSSSCSEEEEC-----CS----SCEEEEEECSSCTTEEEEEET
T ss_pred             CEeeeEEeCCCCCEEEEEeC-----CCeEEEEECCCCCCCcceeEeec-----CC----CCeEEEEeCCCCCCEEEEEeC
Confidence            34445554  456776 655     457899999983   22222211     01    123456677767778999985


Q ss_pred             CCCCcccceEEEEeCCC-CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          293 SDISKVTGNIKFWDIRS-GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       293 ~g~~~~~~sVe~yDprt-~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +      ++|.+||.++ ++++-++..+......+..++++..++..|+.+|.|.+-|+++.+
T Consensus       299 d------g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          299 D------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             T------SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             C------CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            4      4799999998 567788888877888999999999999999999999999999965

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.72  E-value=0.0011  Score=75.87  Aligned_cols=272  Identities=12%  Similarity=0.100  Sum_probs=149.2

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecC
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT  214 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va  214 (466)
                      ..+++...++++  |.+..||... ........+...+.++.+. +++..+.|+  .+|     .+..||..+.+.....
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg-----~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS--EDS-----VIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC--SSS-----BEEEEETTTTEEECCB
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc--CCC-----EEEEEECCCCceEEEe
Confidence            344555553322  4566666322 2222222222334344343 456777777  554     3566777776654332


Q ss_pred             CCCCceeEEEEECCe-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecC
Q 012294          215 RSSSTVQAIGSSDKH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHS  293 (466)
Q Consensus       215 ~Mr~~~~Ava~l~~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~  293 (466)
                      .....+.+++...+. +++++.     ..+|..||..+.+++..+...     ..    ....+.|.+ ++.++++|+.|
T Consensus      1042 ~~~~~v~~~~~~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~~-----~~----~v~~~~~s~-d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1042 AHQETVKDFRLLQDSRLLSWSF-----DGTVKVWNVITGRIERDFTCH-----QG----TVLSCAISS-DATKFSSTSAD 1106 (1249)
T ss_dssp             CCSSCEEEEEECSSSEEEEEES-----SSEEEEEETTTTCCCEEEECC-----SS----CCCCEEECS-SSSSCEEECCS
T ss_pred             cCCCcEEEEEEcCCCcEEEEEC-----CCcEEEEECCCCceeEEEccc-----CC----cEEEEEECC-CCCEEEEEcCC
Confidence            223333335555554 444554     357899999985444333211     11    123344443 55566777644


Q ss_pred             CCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccc
Q 012294          294 DISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKR  373 (466)
Q Consensus       294 g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~  373 (466)
                      |      +|.+||..+++++.+...|......+++++++..|. .|+.+|.|.+-|+++.+.......+..... ...  
T Consensus      1107 ~------~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la-t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~-- 1176 (1249)
T 3sfz_A         1107 K------TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA-TGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TAT-- 1176 (1249)
T ss_dssp             S------CCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE-EEETTSCCCEEESSSSCCCCCCCCCC----------
T ss_pred             C------cEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEE-EEeCCCEEEEEECCCCceEEEecccccccc-ccc--
Confidence            4      799999999999999998888888889999887644 788999999999987542100000000000 000  


Q ss_pred             cccceeEEEE-ECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEee
Q 012294          374 KEGFGCKIEC-HANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRK  451 (466)
Q Consensus       374 ~~~~~~~~~~-~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~  451 (466)
                      ..+.-..++. -+|+.+++-++.|.||.-.    ..    ..+  ..++.         .++.|+.++|--| +++++=.
T Consensus      1177 ~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~----~g----~~~--~~~~~---------~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A         1177 HGGWVTDVCFSPDSKTLVSAGGYLKWWNVA----TG----DSS--QTFYT---------NGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp             CCSCCCEEEECTTSSCEEEESSSEEEBCSS----SC----BCC--CCCCC---------SSCCCCCCEECSSSCCEEEEC
T ss_pred             cCceEEEEEECCCCCEEEECCCeEEEEECC----CC----cee--eeeec---------cCCcccEEEECCCCCEEEEec
Confidence            1111112222 2455666667999999742    11    111  11121         3456777777654 4555556


Q ss_pred             ccceEEEecc
Q 012294          452 GQQTVEVWQS  461 (466)
Q Consensus       452 ~~~~~~vw~~  461 (466)
                      +...|-||+-
T Consensus      1238 ~dg~v~vw~l 1247 (1249)
T 3sfz_A         1238 NLGILYILQV 1247 (1249)
T ss_dssp             TTCCEEEECC
T ss_pred             CCcEEEEEee
Confidence            6678999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.72  E-value=0.0038  Score=58.99  Aligned_cols=151  Identities=10%  Similarity=0.036  Sum_probs=93.5

Q ss_pred             eeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEe
Q 012294          173 VDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYD  248 (466)
Q Consensus       173 v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YD  248 (466)
                      +.++.+. ++..+++|+  .+|     .+..||..+.+-...-.. ...+.+++.. ++..++ |+.     ...|..||
T Consensus       144 i~~~~~~~~~~~l~~~~--~dg-----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d  211 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCC--SDG-----NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-----DNTVRSWD  211 (337)
T ss_dssp             EEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe--CCC-----cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec-----CCcEEEEE
Confidence            3444444 566777887  554     355677666543322221 2333335554 344444 654     45789999


Q ss_pred             cCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceee
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTV  328 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v  328 (466)
                      ..+.+++..+.+..          ....+.|.+ ++.++++|+.+      +.|.+||.++++. .....+......+..
T Consensus       212 ~~~~~~~~~~~~~~----------~v~~~~~s~-~~~~l~~~~~~------~~i~~~~~~~~~~-~~~~~~~~~v~~~~~  273 (337)
T 1gxr_A          212 LREGRQLQQHDFTS----------QIFSLGYCP-TGEWLAVGMES------SNVEVLHVNKPDK-YQLHLHESCVLSLKF  273 (337)
T ss_dssp             TTTTEEEEEEECSS----------CEEEEEECT-TSSEEEEEETT------SCEEEEETTSSCE-EEECCCSSCEEEEEE
T ss_pred             CCCCceEeeecCCC----------ceEEEEECC-CCCEEEEEcCC------CcEEEEECCCCCe-EEEcCCccceeEEEE
Confidence            99855444443311          123344544 45556666643      4799999999875 466677777788889


Q ss_pred             ecCCCceEEEEEeeCceeEeeccccC
Q 012294          329 SDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       329 ~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++..|+ ++..+|.|.+-|+++.+
T Consensus       274 ~~~~~~l~-~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          274 AYCGKWFV-STGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             CTTSSEEE-EEETTSEEEEEETTTCC
T ss_pred             CCCCCEEE-EecCCCcEEEEECCCCe
Confidence            98887654 77889999999998744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.71  E-value=0.0024  Score=69.22  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=109.4

Q ss_pred             eecCCcEEEEcC--CceeeEecCCC-CC-CCccccceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCc--e
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSMR-KK-STILTHFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLN--W  210 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~a-~m-~~~R~~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W  210 (466)
                      ..+++...++.+  |.+..|||... .. .....+-+.+.++.+.  ++.++++|+  .+|     ++-.||..+.+  +
T Consensus       105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg-----~v~vwd~~~~~~~~  177 (814)
T 3mkq_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDR-----TVKVWSLGQSTPNF  177 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTS-----EEEEEETTCSSCSE
T ss_pred             EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCccee
Confidence            344554442322  45667775431 21 1111222334455555  456888887  555     35556654332  2


Q ss_pred             eecCCCCCceeEEEEE---CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294          211 ENVTRSSSTVQAIGSS---DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL  286 (466)
Q Consensus       211 ~~va~Mr~~~~Ava~l---~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L  286 (466)
                      .....-...+..++..   ++.+++ |+.     ...|-.||..+.+++..+....         .....+.|.+ ++.+
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~  242 (814)
T 3mkq_A          178 TLTTGQERGVNYVDYYPLPDKPYMITASD-----DLTIKIWDYQTKSCVATLEGHM---------SNVSFAVFHP-TLPI  242 (814)
T ss_dssp             EEECCCTTCCCEEEECCSTTCCEEEEECT-----TSEEEEEETTTTEEEEEEECCS---------SCEEEEEECS-SSSE
T ss_pred             EEecCCCCCEEEEEEEECCCCCEEEEEeC-----CCEEEEEECCCCcEEEEEcCCC---------CCEEEEEEcC-CCCE
Confidence            2111111223324444   454444 655     3578999998844443332100         1123345554 4456


Q ss_pred             EEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          287 LASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       287 yv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +++|+.|      ++|.+||..+++.+++...+.+....++..+++..++.+++.++.+.+.++...
T Consensus       243 l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          243 IISGSED------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEEEETT------SCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             EEEEeCC------CeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence            6777744      479999999999999999888788888999999988778888888888887653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.71  E-value=0.0072  Score=57.76  Aligned_cols=194  Identities=13%  Similarity=0.189  Sum_probs=111.7

Q ss_pred             ecCCcEEEEcC--CceeeEecCC---CCCCCccccceeeeeecccC---CcEEEEecccCCCceeccceeeeeCCCCcee
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM---RKKSTILTHFTAVDSLLALS---PGVAAAGATDFSGLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~---a~m~~~R~~~~~v~sl~~l~---~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~  211 (466)
                      .++|...++.+  |.+..||...   ....+...+-+.+.++.+..   +.++|.|+  .++     ++-.+|..+.+|.
T Consensus        18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s--~D~-----~v~iWd~~~~~~~   90 (297)
T 2pm7_B           18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDG-----KVMIWKEENGRWS   90 (297)
T ss_dssp             CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTT-----EEEEEEBSSSCBC
T ss_pred             CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc--CCC-----EEEEEEcCCCceE
Confidence            35666654433  3344554321   11122223334555665543   67888888  665     4566777777765


Q ss_pred             ecCCC---CCceeEEEEEC---CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee--
Q 012294          212 NVTRS---SSTVQAIGSSD---KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS--  282 (466)
Q Consensus       212 ~va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~--  282 (466)
                      .+..+   ...+.+++...   +.+.+ |+.     ..+|-.||..+.....    ...+.+..   .....+.|.+.  
T Consensus        91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-----d~~v~~wd~~~~~~~~----~~~~~~h~---~~v~~~~~~p~~~  158 (297)
T 2pm7_B           91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASS-----DGKVSVVEFKENGTTS----PIIIDAHA---IGVNSASWAPATI  158 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEEBCSSSCBC----CEEEECCS---SCEEEEEECCCC-
T ss_pred             EEEEeecCCCceeEEEeCcCCCCcEEEEEEC-----CCcEEEEEecCCCcee----eeeeeccc---CccceEeecCCcc
Confidence            44322   23344455543   44555 655     3578899987721110    00010000   01122334332  


Q ss_pred             ----------CCeEEEEeecCCCCcccceEEEEeCCCCe----eeeEEcCCcccccceeeecCC--CceEEEEEeeCcee
Q 012294          283 ----------YNLLLASGSHSDISKVTGNIKFWDIRSGN----VAWEVKDEVDCFSDVTVSDNL--SAIYKVGINSGEVS  346 (466)
Q Consensus       283 ----------~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~----~vW~~~~~~d~~~~~~v~~~~--~~i~~v~~~~g~l~  346 (466)
                                ++.++|+|+.|+      +|.+||.++++    ++-++.+|.+....++.++++  ..++..|+.+|.+.
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             -----------CCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             cccccCCCCCCcceEEEEcCCC------cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence                      256788888554      79999999876    445667787778888899886  56777889999999


Q ss_pred             EeeccccCCCCCeE
Q 012294          347 YMDLRKLGDSSEWI  360 (466)
Q Consensus       347 ~~dlr~~~~~~~W~  360 (466)
                      +-|++...  .+|.
T Consensus       233 iWd~~~~~--~~~~  244 (297)
T 2pm7_B          233 IWTQDNEQ--GPWK  244 (297)
T ss_dssp             EEEESSTT--SCCE
T ss_pred             EEEeCCCC--Cccc
Confidence            99988733  3454

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.69  E-value=0.0024  Score=62.31  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             eEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          221 QAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       221 ~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      .++...++.||+ .|..+   .++|-++|++|.+.+..+.-..          ..-..+....++.||++...      .
T Consensus        46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~----------~~FgeGit~~g~~ly~ltw~------~  106 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGK----------RYFGEGISDWKDKIVGLTWK------N  106 (262)
T ss_dssp             EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCT----------TCCEEEEEEETTEEEEEESS------S
T ss_pred             ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCC----------ccceeEEEEeCCEEEEEEee------C
Confidence            348888999999 66544   3589999999944443332110          01112344578999999873      4


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      +.+-.||+.|.+++-+..-+.   -+.+++.++..||+--+ ++.|.+.|-.+.+-... +.+....+.+     + .=-
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~-I~V~~~g~~~-----~-~lN  175 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRT-ITVTAHGEEL-----P-ELN  175 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEE-EECEETTEEC-----C-CEE
T ss_pred             CEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEE-EEeccCCccc-----c-ccc
Confidence            579999999999998886554   55678889999887665 78899999877652100 2232211110     1 111


Q ss_pred             EEEEECCEEEEE--eCCeEEEe
Q 012294          380 KIECHANQVFCG--KGGEIELW  399 (466)
Q Consensus       380 ~~~~~~~~lf~~--~~~~~~v~  399 (466)
                      .+++.+|+||+.  ..+.|.|-
T Consensus       176 ELe~~~G~lyan~w~~~~I~vI  197 (262)
T 3nol_A          176 ELEWVDGEIFANVWQTNKIVRI  197 (262)
T ss_dssp             EEEEETTEEEEEETTSSEEEEE
T ss_pred             eeEEECCEEEEEEccCCeEEEE
Confidence            477889999998  35555444

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.035  Score=51.77  Aligned_cols=230  Identities=13%  Similarity=0.145  Sum_probs=129.4

Q ss_pred             eeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEEC-Ce-EEEEecCCCcCCCeeEEE
Q 012294          171 TAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSD-KH-LFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       171 ~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~~-IYaGg~~g~~~l~sVE~Y  247 (466)
                      ..+.++++.++..++.|+  .+|     .+..||..+.+-...-.. ...+.+++... +. |++|+.+     ..|..|
T Consensus        19 ~~v~~~~~~~~~~l~s~~--~dg-----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~   86 (313)
T 3odt_A           19 QDVRDVVAVDDSKVASVS--RDG-----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-----TMINGV   86 (313)
T ss_dssp             SCEEEEEEEETTEEEEEE--TTS-----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred             CCcEEEEecCCCEEEEEE--cCC-----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----CeEEEE
Confidence            445555566777888888  665     345566554432211111 33333455553 33 4446653     456777


Q ss_pred             ecCCCC---ccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccc
Q 012294          248 DINSLK---PVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFS  324 (466)
Q Consensus       248 Dp~t~~---~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~  324 (466)
                      |.....   ++..+..     ..    .....+.|   ++.++++|+.+      +.|.+||  +++.+.....+.....
T Consensus        87 ~~~~~~~~~~~~~~~~-----~~----~~i~~~~~---~~~~l~~~~~d------~~i~~~d--~~~~~~~~~~~~~~v~  146 (313)
T 3odt_A           87 PLFATSGEDPLYTLIG-----HQ----GNVCSLSF---QDGVVISGSWD------KTAKVWK--EGSLVYNLQAHNASVW  146 (313)
T ss_dssp             ETTCCTTSCC-CEECC-----CS----SCEEEEEE---ETTEEEEEETT------SEEEEEE--TTEEEEEEECCSSCEE
T ss_pred             EeeecCCCCcccchhh-----cc----cCEEEEEe---cCCEEEEEeCC------CCEEEEc--CCcEEEecccCCCcee
Confidence            776622   1221111     00    01122333   45566777744      4799999  7778888888877777


Q ss_pred             ceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeee
Q 012294          325 DVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIV  403 (466)
Q Consensus       325 ~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~  403 (466)
                      .+...+....++.++..+|.|.+-|.+....     .+..    ..   .....+..-.-+++++++ .++.|.+|.-- 
T Consensus       147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~----~~---~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~-  213 (313)
T 3odt_A          147 DAKVVSFSENKFLTASADKTIKLWQNDKVIK-----TFSG----IH---NDVVRHLAVVDDGHFISCSNDGLIKLVDMH-  213 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTEEEE-----EECS----SC---SSCEEEEEEEETTEEEEEETTSEEEEEETT-
T ss_pred             EEEEccCCCCEEEEEECCCCEEEEecCceEE-----EEec----cC---cccEEEEEEcCCCeEEEccCCCeEEEEECC-
Confidence            7777774555666889999999998444221     1111    00   111222222335565544 67789999752 


Q ss_pred             ecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          404 MGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       404 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                         ..    .  .-..++         ...+.|+.+++--+..+++=.....|-||+...
T Consensus       214 ---~~----~--~~~~~~---------~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          214 ---TG----D--VLRTYE---------GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             ---TC----C--EEEEEE---------CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred             ---ch----h--hhhhhh---------cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence               11    1  111112         245679999997664566777778899998654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.68  E-value=0.011  Score=61.29  Aligned_cols=199  Identities=11%  Similarity=0.005  Sum_probs=110.7

Q ss_pred             CCCCCceeeecCCcEEEE-cCCceeeEecCCC----CC-CCcccccee-eeeeccc---CCcEEEEecccCCCceeccce
Q 012294          131 RDSPSAIATTNYGTLHVS-HGSKITSFDWSMR----KK-STILTHFTA-VDSLLAL---SPGVAAAGATDFSGLQVLDLE  200 (466)
Q Consensus       131 R~~~~a~~a~~~g~lyva-~GG~ve~YDW~~a----~m-~~~R~~~~~-v~sl~~l---~~~lYaiGG~~~~g~~~l~sv  200 (466)
                      +....+++..+++.+.++ .++.+..||....    .. .....+-.. +.++++.   ++++.|.|+  .+|.     +
T Consensus        18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~--~dg~-----v   90 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD--ESGK-----V   90 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE--TTSE-----E
T ss_pred             cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec--CCCE-----E
Confidence            344444556677754433 3355666663321    11 111222234 5555554   467888888  6653     4


Q ss_pred             eeeeCCCC------ceeecCCC---CCceeEEEEECC-e-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCce
Q 012294          201 NGYVKETL------NWENVTRS---SSTVQAIGSSDK-H-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIE  269 (466)
Q Consensus       201 E~ydp~t~------~W~~va~M---r~~~~Ava~l~~-~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w  269 (466)
                      ..||..+.      .......+   ...+.+++...+ . |++++.+... ...|..||..+  .+..+..     ... 
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d~~~--~~~~~~~-----~~~-  161 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGN--SLGEVSG-----HSQ-  161 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCC--EEEECCS-----CSS-
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEECCC--cceeeec-----CCc-
Confidence            44444322      11111111   223333454433 3 4445543222 45777777332  2222211     011 


Q ss_pred             eecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc---cccceeeecCCCceEEEEEeeCcee
Q 012294          270 SAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD---CFSDVTVSDNLSAIYKVGINSGEVS  346 (466)
Q Consensus       270 ~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d---~~~~~~v~~~~~~i~~v~~~~g~l~  346 (466)
                         ....+.|.+-+..++++|+.+      +.|.+||.++.+++.+...+.+   .+..+..+++++.++.++..+|.|.
T Consensus       162 ---~v~~~~~~~~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          162 ---RINACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             ---CEEEEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ---cEEEEEECCCCCcEEEEEeCC------CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence               123345555555577777744      4899999999999999988877   7888899998344455788999999


Q ss_pred             EeeccccC
Q 012294          347 YMDLRKLG  354 (466)
Q Consensus       347 ~~dlr~~~  354 (466)
                      +-|+++.+
T Consensus       233 vwd~~~~~  240 (615)
T 1pgu_A          233 CFDGKSGE  240 (615)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99998744

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.68  E-value=0.0034  Score=61.29  Aligned_cols=154  Identities=12%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             eeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEe
Q 012294          172 AVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYD  248 (466)
Q Consensus       172 ~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YD  248 (466)
                      .+.++.+.++..++.|+  .++     ++..||..+.+-...-.- ...+.+++... +.+++ |+.     ..+|-.||
T Consensus       145 ~v~~~~~~~~~~l~s~s--~d~-----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~-----d~~v~~wd  212 (340)
T 1got_B          145 YLSCCRFLDDNQIVTSS--GDT-----TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-----DASAKLWD  212 (340)
T ss_dssp             CEEEEEEEETTEEEEEE--TTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEE
T ss_pred             cEEEEEECCCCcEEEEE--CCC-----cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC-----CCcEEEEE
Confidence            34444455555566666  444     355677666543211111 22333345543 45666 665     35789999


Q ss_pred             cCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--cccccce
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--VDCFSDV  326 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~  326 (466)
                      ..+.+++..+..     ...    +...+.|.+ ++.++++|+.||      +|.+||.++++.+.....+  ...+..+
T Consensus       213 ~~~~~~~~~~~~-----h~~----~v~~v~~~p-~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          213 VREGMCRQTFTG-----HES----DINAICFFP-NGNAFATGSDDA------TCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             TTTCSEEEEECC-----CSS----CEEEEEECT-TSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             CCCCeeEEEEcC-----CcC----CEEEEEEcC-CCCEEEEEcCCC------cEEEEECCCCcEEEEEccCCcccceEEE
Confidence            988444333321     011    123344554 566777787544      7999999999988776533  2345667


Q ss_pred             eeecCCCceEEEEEeeCceeEeeccccC
Q 012294          327 TVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       327 ~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..++++..| .+|..+|.+.+-|+++..
T Consensus       277 ~~s~~g~~l-~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          277 SFSKSGRLL-LAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             EECTTSSEE-EEEETTSEEEEEETTTCC
T ss_pred             EECCCCCEE-EEECCCCeEEEEEcccCc
Confidence            788887664 478899999999988744

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.68  E-value=0.007  Score=58.92  Aligned_cols=222  Identities=18%  Similarity=0.284  Sum_probs=127.1

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCc----eeecCCCCCceeEEEEECC-eEEE-EecCCCcCCCeeEEEecCCCCc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLN----WENVTRSSSTVQAIGSSDK-HLFV-SFESGRRNSNSIMVYDINSLKP  254 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~----W~~va~Mr~~~~Ava~l~~-~IYa-Gg~~g~~~l~sVE~YDp~t~~~  254 (466)
                      +.+.|.|+  .++.     +..+|....+    |+.... ...+.+++...+ .+.+ |+.     ..+|-.||..+.+.
T Consensus        48 ~~~l~tgs--~D~~-----v~vW~~~~~~~~~~~~l~gh-~~~v~~~~~~~~~~~l~s~s~-----D~~i~lWd~~~~~~  114 (321)
T 3ow8_A           48 SETVVTGS--LDDL-----VKVWKWRDERLDLQWSLEGH-QLGVVSVDISHTLPIAASSSL-----DAHIRLWDLENGKQ  114 (321)
T ss_dssp             -CEEEEEE--TTSC-----EEEEEEETTEEEEEEEECCC-SSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEE
T ss_pred             CCEEEEEc--CCCC-----EEEEECCCCCeeeeeeeccC-CCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCCCCE
Confidence            45777787  6653     4444443332    222111 233333444433 4555 554     45789999998443


Q ss_pred             cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc
Q 012294          255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA  334 (466)
Q Consensus       255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~  334 (466)
                      +..+....         .....+.|.+ ++.++++|+.+      +.|.+||.++++..++...+......++.++++..
T Consensus       115 ~~~~~~~~---------~~~~~~~~sp-dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          115 IKSIDAGP---------VDAWTLAFSP-DSQYLATGTHV------GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEEECCT---------TCCCCEEECT-TSSEEEEECTT------SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             EEEEeCCC---------ccEEEEEECC-CCCEEEEEcCC------CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            33332111         1122344544 55666777744      47999999999999998888777788889998876


Q ss_pred             eEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCC
Q 012294          335 IYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCG--KGGEIELWSEIVMGSRKSRE  411 (466)
Q Consensus       335 i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~  411 (466)
                      |. .|+.+|.+.+-|+++..      .+..    +..  ....=..|+. -+++++++  .++.|.||.--    ..   
T Consensus       179 la-sg~~dg~i~iwd~~~~~------~~~~----~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----~~---  238 (321)
T 3ow8_A          179 LA-SGAIDGIINIFDIATGK------LLHT----LEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----HA---  238 (321)
T ss_dssp             EE-EEETTSCEEEEETTTTE------EEEE----ECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETT----TC---
T ss_pred             EE-EEcCCCeEEEEECCCCc------EEEE----Ecc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----Cc---
Confidence            54 78899999999998743      1211    111  0101112222 23444444  56789999742    11   


Q ss_pred             CCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEeccCC
Q 012294          412 GGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       412 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~  463 (466)
                        .+     .+.+.+     ..+.|..++|-- ++++++=.....|-||+...
T Consensus       239 --~~-----~~~~~~-----h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          239 --NL-----AGTLSG-----HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             --CE-----EEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             --ce-----eEEEcC-----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence              11     111222     355799988852 24566666667899998643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0091  Score=58.08  Aligned_cols=243  Identities=15%  Similarity=0.248  Sum_probs=130.1

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCC-----CceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcC
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKET-----LNWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRN  240 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t-----~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~  240 (466)
                      .+.++++- ++.+.|.|+  .++.     +..||...     ..+..+..+   ...+.+++.. ++...| |+.     
T Consensus        60 ~v~~v~~sp~~~~las~s--~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----  127 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGS--FDST-----VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----  127 (330)
T ss_dssp             CEEEEEECTTSSEEEEEE--TTSC-----EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----
T ss_pred             CEEEEEECCCCCEEEEEe--CCCc-----EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----
Confidence            44444443 467888888  6653     34444422     122222222   2233335554 345555 665     


Q ss_pred             CCeeEEEecCC----CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC--eeee
Q 012294          241 SNSIMVYDINS----LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG--NVAW  314 (466)
Q Consensus       241 l~sVE~YDp~t----~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~--~~vW  314 (466)
                      ..+|-.||..+    ++.+..+..     ...    +...+.|.+ ++.++++|+.|+      +|.+||.+++  +++-
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~-----h~~----~v~~v~~~p-~~~~l~s~s~D~------~i~iW~~~~~~~~~~~  191 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQE-----HSQ----DVKHVIWHP-SEALLASSSYDD------TVRIWKDYDDDWECVA  191 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECC-----CSS----CEEEEEECS-SSSEEEEEETTS------CEEEEEEETTEEEEEE
T ss_pred             CCEEEEEeccCCCCCeEEEEEecc-----CCC----ceEEEEECC-CCCEEEEEcCCC------eEEEEECCCCCeeEEE
Confidence            35788999853    111111110     011    123445655 456677787544      7999999887  5667


Q ss_pred             EEcCCcccccceeeecCCC-ceEEEEEeeCceeEeeccccCC--CCCeEEeccCCccccccccccceeEEEEE-CCEEEE
Q 012294          315 EVKDEVDCFSDVTVSDNLS-AIYKVGINSGEVSYMDLRKLGD--SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFC  390 (466)
Q Consensus       315 ~~~~~~d~~~~~~v~~~~~-~i~~v~~~~g~l~~~dlr~~~~--~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~  390 (466)
                      ...+|.+....+..++++. .+...|+.++.+.+-|++....  ...|.+...    +.. .....=..++.. ++.|++
T Consensus       192 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~----~~~-~h~~~v~~v~~s~~~~l~s  266 (330)
T 2hes_X          192 VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI----LPD-VHKRQVYNVAWGFNGLIAS  266 (330)
T ss_dssp             EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE----CCS-CCSSCEEEEEECTTSCEEE
T ss_pred             EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee----ccc-ccccceEEEEEcCCCEEEE
Confidence            7778877777778888743 3455778999999999987532  345665543    111 011111223333 344444


Q ss_pred             E-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCC-ceEEEeee---cceeEEEeeccceEEEeccCC
Q 012294          391 G-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGS-KITNLSFG---GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       391 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~i~~~~~g---g~r~f~~~~~~~~~~vw~~~~  463 (466)
                      . .++.|.||...    ..       ..+.....+.+     ..+ .|..+++-   +.+++++=.+-..|-||+...
T Consensus       267 ~~~dg~v~iw~~~----~~-------~~~~~~~~~~~-----h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          267 VGADGVLAVYEEV----DG-------EWKVFAKRALC-----HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTSCEEEEEEE----TT-------EEEEEEEESCT-----TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EeCCCEEEEEEcC----CC-------ceEEEeccccc-----cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3 67789999853    11       10111111112     233 68888774   346667777778899998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.016  Score=58.63  Aligned_cols=153  Identities=10%  Similarity=0.028  Sum_probs=91.8

Q ss_pred             eeEEEEEC----CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCC
Q 012294          220 VQAIGSSD----KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD  294 (466)
Q Consensus       220 ~~Ava~l~----~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g  294 (466)
                      +.+++...    +.+++ |+.     ...|-+||..+.+.+..+-.    +...    ....+.|.  ++.++++|+.| 
T Consensus       198 v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~----~h~~----~v~~~~~s--d~~~l~s~~~d-  261 (450)
T 2vdu_B          198 LTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQCFIVDKWLF----GHKH----FVSSICCG--KDYLLLSAGGD-  261 (450)
T ss_dssp             EEEEEEEECTTSCEEEEEEET-----TSCEEEEEESCTTCEEEECC----CCSS----CEEEEEEC--STTEEEEEESS-
T ss_pred             eEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCCCceeeeeec----CCCC----ceEEEEEC--CCCEEEEEeCC-
Confidence            33355544    44444 655     35789999988443333110    1111    23345565  77777788744 


Q ss_pred             CCcccceEEEEeCCCCeeeeEEcCC-------------------------cccccceeeecCCCceEEEEEeeCceeEee
Q 012294          295 ISKVTGNIKFWDIRSGNVAWEVKDE-------------------------VDCFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       295 ~~~~~~sVe~yDprt~~~vW~~~~~-------------------------~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                           ++|.+||.++++++-++..+                         ...+.++...+++..||..+..++.|.+-|
T Consensus       262 -----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          262 -----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             -----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             -----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence                 48999999999988666421                         123456677778888876655899999999


Q ss_pred             ccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC---------eEEEeEe
Q 012294          350 LRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG---------EIELWSE  401 (466)
Q Consensus       350 lr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~---------~~~v~~~  401 (466)
                      +.... .+.+..+..    +..  . +.-..++...+.++++.+.         .|+||.-
T Consensus       337 ~~~~~-~~~l~~~~~----~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          337 MSEKQ-KGDLALKQI----ITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             ECSSS-TTCEEEEEE----EEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             eccCC-CCceeeccE----ecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            92212 234444443    322  1 2445667777778777543         3777764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.63  E-value=0.031  Score=54.64  Aligned_cols=186  Identities=10%  Similarity=0.089  Sum_probs=106.9

Q ss_pred             eecCC-cEEEEcC--CceeeEecCC-CCCCCcc--ccceeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCce
Q 012294          139 TTNYG-TLHVSHG--SKITSFDWSM-RKKSTIL--THFTAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLNW  210 (466)
Q Consensus       139 a~~~g-~lyva~G--G~ve~YDW~~-a~m~~~R--~~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W  210 (466)
                      ..+++ .+.++++  |.+..||... .......  .+-..+.++.+..  +.+++.|+  .++     .+..||......
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~-----~i~iwd~~~~~~  153 (383)
T 3ei3_B           81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS--IRG-----ATTLRDFSGSVI  153 (383)
T ss_dssp             ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE--TTT-----EEEEEETTSCEE
T ss_pred             ECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe--CCC-----EEEEEECCCCce
Confidence            34455 4553433  4556666433 2111111  1334555666654  46777777  554     345566665544


Q ss_pred             eecCCC---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCe
Q 012294          211 ENVTRS---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNL  285 (466)
Q Consensus       211 ~~va~M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~  285 (466)
                      .....-   ...+.+++... +.+.+ |+.     ...|..||... +++..+..     ..    .....+.|.+-+..
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-~~~~~~~~-----h~----~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGLDG-HEIFKEKL-----HK----AKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEETTS-CEEEEEEC-----SS----SCEEEEEECSSCTT
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEECCC-CEEEEecc-----CC----CcEEEEEECCCCCC
Confidence            433222   12233355543 34444 655     35789999843 22222211     01    12344566665554


Q ss_pred             EEEEeecCCCCcccceEEEEeCCC----CeeeeEEcCCcccccceeeec-CCCceEEEEEeeCceeEeeccccC
Q 012294          286 LLASGSHSDISKVTGNIKFWDIRS----GNVAWEVKDEVDCFSDVTVSD-NLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       286 Lyv~Gg~~g~~~~~~sVe~yDprt----~~~vW~~~~~~d~~~~~~v~~-~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++|+.|      ++|.+||.++    ++++... ++......+..++ ++.. +.+++.+|.|.+-|+++..
T Consensus       219 ~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          219 LMATSSVD------ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             EEEEEETT------SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTT
T ss_pred             EEEEEeCC------CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCc
Confidence            77788744      4899999998    6666665 5666778888888 6655 4588899999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.61  E-value=0.012  Score=60.85  Aligned_cols=183  Identities=12%  Similarity=0.101  Sum_probs=104.1

Q ss_pred             eecCCcEEEEcCCc----eeeEecCC-CCCCCccccceeeeeecccCCc--EEEEecccCCCceeccceeeeeCCCCcee
Q 012294          139 TTNYGTLHVSHGSK----ITSFDWSM-RKKSTILTHFTAVDSLLALSPG--VAAAGATDFSGLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       139 a~~~g~lyva~GG~----ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~--lYaiGG~~~~g~~~l~svE~ydp~t~~W~  211 (466)
                      -.+++...++.|..    ...+.|.. ........+-..+.++.+..+.  +++.|+  .++     .+..||..+.+-.
T Consensus       124 ~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~-----~v~vwd~~~~~~~  196 (615)
T 1pgu_A          124 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDG-----SVVFYQGPPFKFS  196 (615)
T ss_dssp             ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE--TTT-----EEEEEETTTBEEE
T ss_pred             EeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe--CCC-----cEEEEeCCCccee
Confidence            34566555343321    34455765 3333333333445555554443  777777  554     3455665543321


Q ss_pred             ecCCC-CC---ceeEEEEEC--Ce-EEEEecCCCcCCCeeEEEecCCCCccccc-----cccccccCCceeecCcceeeE
Q 012294          212 NVTRS-SS---TVQAIGSSD--KH-LFVSFESGRRNSNSIMVYDINSLKPVNEI-----GQNEIYGTDIESAIPATKLRW  279 (466)
Q Consensus       212 ~va~M-r~---~~~Ava~l~--~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~-----~~~~~~~~~~w~~~~~~k~~~  279 (466)
                      ..-.- ..   .+.+++...  +. |++|+.     ...|-.||..+.+++..+     ++..          +...+.|
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~----------~v~~~~~  261 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-----DRKISCFDGKSGEFLKYIEDDQEPVQG----------GIFALSW  261 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEET-----TCCEEEEETTTCCEEEECCBTTBCCCS----------CEEEEEE
T ss_pred             eeecccCCCCceEEEEEECCCCCCEEEEEeC-----CCeEEEEECCCCCEeEEecccccccCC----------ceEEEEE
Confidence            11111 22   344456553  34 444665     357899999996666666     2211          2234455


Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc----ccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV----DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~----d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .  ++.++++++.+      ++|.+||.++++++.++..+.    .....+... + ...+.++..+|.+.+-|++..
T Consensus       262 ~--~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          262 L--DSQKFATVGAD------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             S--SSSEEEEEETT------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEETTEE
T ss_pred             c--CCCEEEEEcCC------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-C-CCeEEEEECCCCEEEEECCCC
Confidence            5  77777888744      479999999999998886552    222333333 3 444557889999999998873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0022  Score=62.64  Aligned_cols=152  Identities=12%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             eeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEec
Q 012294          173 VDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDI  249 (466)
Q Consensus       173 v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp  249 (466)
                      +.++.+..+..+++|+  .+|     .+..||..+.+-...-.. ...+.+++.. ++.+++ |+.     ...|-.||.
T Consensus       209 ~~~~~~~~~~~~~~~~--~~g-----~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~  276 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPG--PKG-----AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-----DGTLRIWHG  276 (425)
T ss_dssp             BSCCEEEETTEEEEEC--GGG-----CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-----TSCEEEECS
T ss_pred             eeEEEEcCCCEEEEEc--CCC-----eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEEC
Confidence            3444556677788887  443     355666665432111111 2333335555 344444 654     346899999


Q ss_pred             CCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeee
Q 012294          250 NSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVS  329 (466)
Q Consensus       250 ~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~  329 (466)
                      .+.+++..+....         .....+.|.+ ++ ++++|+.+      +.|.+||.++++++.....+......+..+
T Consensus       277 ~~~~~~~~~~~~~---------~~i~~~~~~~-~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          277 GNGNSQNCFYGHS---------QSIVSASWVG-DD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             SSBSCSEEECCCS---------SCEEEEEEET-TT-EEEEEETT------SEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             CCCccceEecCCC---------ccEEEEEECC-CC-EEEEEeCC------CcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            9855544443211         1233455665 44 66677644      489999999999999998887777888899


Q ss_pred             cCCCceEEEEEeeCceeEeeccccC
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +++..| .++..+|.|.+-|++...
T Consensus       340 ~~~~~l-~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          340 QDGQKY-AVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSSEE-EEEETTSCEEEEECHHHH
T ss_pred             CCCCEE-EEEECCCeEEEEECCCCc
Confidence            887754 478899999999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.60  E-value=0.0022  Score=61.40  Aligned_cols=154  Identities=12%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE----CCe-EEEEecCCCcCCCeeEEEecCCCC
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS----DKH-LFVSFESGRRNSNSIMVYDINSLK  253 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l----~~~-IYaGg~~g~~~l~sVE~YDp~t~~  253 (466)
                      -++.++++|+  .+|     .+..||..+.+=.........+.+++..    ++. |++|+.     ...|..||..+.+
T Consensus       178 ~~~~~l~~~~--~d~-----~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  245 (357)
T 3i2n_A          178 QEERVVCAGY--DNG-----DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSL-----EGKFHVFDMRTQH  245 (357)
T ss_dssp             -CCCEEEEEE--TTS-----EEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES-----TTEEEEEEEEEEE
T ss_pred             CCCCEEEEEc--cCC-----eEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECC-----CCeEEEEeCcCCC
Confidence            4677888887  554     3556666655422111112334445665    344 444655     3578999998855


Q ss_pred             ccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-------------------eeee
Q 012294          254 PVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-------------------NVAW  314 (466)
Q Consensus       254 ~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-------------------~~vW  314 (466)
                      ++..+.... +.+.   ......+.|.+-+..++++|+.||      .|.+||.+++                   +.+.
T Consensus       246 ~~~~~~~~~-~~~~---~~~v~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          246 PTKGFASVS-EKAH---KSTVWQVRHLPQNRELFLTAGGAG------GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             TTTEEEEEE-EECC---SSCEEEEEEETTEEEEEEEEETTS------EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred             cccceeeec-cCCC---cCCEEEEEECCCCCcEEEEEeCCC------cEEEeecCCCcccccccCCCCccccccccceee
Confidence            444432110 0000   112344556654444788888544      7999998865                   4567


Q ss_pred             EEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          315 EVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       315 ~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +...+.+....+..++++..|+.-|+.+|.|.+-|+.+++
T Consensus       316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            7777777888999999999877668899999999998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.59  E-value=0.011  Score=55.52  Aligned_cols=165  Identities=14%  Similarity=0.212  Sum_probs=99.8

Q ss_pred             ceeeEEee-CCeEEEEeecCCCCcccceEEEEeCCCC---------eeeeEEcCCcccccceeeecCC-CceEEEEEeeC
Q 012294          275 TKLRWVSS-YNLLLASGSHSDISKVTGNIKFWDIRSG---------NVAWEVKDEVDCFSDVTVSDNL-SAIYKVGINSG  343 (466)
Q Consensus       275 ~k~~~~~~-~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---------~~vW~~~~~~d~~~~~~v~~~~-~~i~~v~~~~g  343 (466)
                      ..+.|.+. ++.++++|+.||      +|.+||.+++         +.+.+...+.+....+...++. +.++..|+.+|
T Consensus        61 ~~~~~~~~~d~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  134 (351)
T 3f3f_A           61 VAIDWASPEYGRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG  134 (351)
T ss_dssp             EEEEECCGGGCSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred             EEEEEcCCCCCCEEEEEcCCC------eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence            34556654 477788888544      7999999998         5678888887788888888883 34455788999


Q ss_pred             ceeEeeccccCCCCCeEEeccCCccccccc--cccceeEEEEE-----CCEEEEEeCCeEEEeEeeeecCCCCCCCCCcc
Q 012294          344 EVSYMDLRKLGDSSEWICLGDGRKMVNGKR--KEGFGCKIECH-----ANQVFCGKGGEIELWSEIVMGSRKSREGGPLE  416 (466)
Q Consensus       344 ~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~--~~~~~~~~~~~-----~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~  416 (466)
                      .|.+-|+++......|..-.. .+.+....  ....-..++..     +..+.++..+..-+|.-.    ..       .
T Consensus       135 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~----~~-------~  202 (351)
T 3f3f_A          135 ILRLYDALEPSDLRSWTLTSE-MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG----KD-------G  202 (351)
T ss_dssp             EEEEEECSSTTCTTCCEEEEE-EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC----TT-------S
T ss_pred             cEEEecCCChHHhcccccccc-ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc----CC-------C
Confidence            999999998664333331111 11111000  01011222222     455666655555555443    11       1


Q ss_pred             cceeeccccCccccCCCCceEEEeeecc-----eeEEEeeccceEEEeccC
Q 012294          417 ERVFRKNLMGRVTDMGGSKITNLSFGGN-----KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       417 ~~~~r~~~~~~~~~~~~~~i~~~~~gg~-----r~f~~~~~~~~~~vw~~~  462 (466)
                      +......+-+     ..+.|+.+++--+     +++++=.+...|.||+..
T Consensus       203 ~~~~~~~~~~-----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          203 KLHVAAKLPG-----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             CEEEEEECCC-----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             ceeeeeecCC-----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence            1101111222     3567999998776     788888888889999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.0019  Score=64.65  Aligned_cols=153  Identities=13%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC--CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCe
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD--EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW  359 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~--~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W  359 (466)
                      -++.++++|+.|      ++|.+||.+++++++++..  +.+.+..+.+++++.. +..|+.+|.|.+-|+|+..     
T Consensus       180 ~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~-----  247 (437)
T 3gre_A          180 EEKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGIIDIWDIRFNV-----  247 (437)
T ss_dssp             SSCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSCEEEEETTTTE-----
T ss_pred             CCCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCeEEEEEcCCcc-----
Confidence            357778888754      4899999999999999987  5667788888888665 4488899999999999732     


Q ss_pred             EEeccCCccccccccccceeEEEEE--------CCEEEEE--eCCeEEEeEeeee-------cCCCCCCCCCcccceeec
Q 012294          360 ICLGDGRKMVNGKRKEGFGCKIECH--------ANQVFCG--KGGEIELWSEIVM-------GSRKSREGGPLEERVFRK  422 (466)
Q Consensus       360 ~~~~~~~~~m~~~~~~~~~~~~~~~--------~~~lf~~--~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~r~  422 (466)
                       ++..    +..   . ....|.+.        +++++++  .++.|.||.--..       ..+.     .+....|.-
T Consensus       248 -~~~~----~~~---~-~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~  313 (437)
T 3gre_A          248 -LIRS----WSF---G-DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE-----QPSMEHFLP  313 (437)
T ss_dssp             -EEEE----EBC---T-TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS-----CCCGGGGSC
T ss_pred             -EEEE----Eec---C-CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC-----CCccceecc
Confidence             2222    110   0 11122222        2445554  3456999974200       0000     011011110


Q ss_pred             --------cccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          423 --------NLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       423 --------~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                              .+.+   +...+.|+.+++-.++++++=.+...|-||+...
T Consensus       314 ~~~~l~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          314 IEKGLEELNFCG---IRSLNALSTISVSNDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             BCSSGGGCCCCC---CCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred             cccccccceecc---cccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence                    0111   1245678889998888999999889999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.0035  Score=68.90  Aligned_cols=242  Identities=9%  Similarity=0.162  Sum_probs=132.3

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC---CeEEE-EecCCCcCCCe
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD---KHLFV-SFESGRRNSNS  243 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~~l~s  243 (466)
                      .+.++++- ++..++.|+  .+|     ++..||....++..+..+   ...+-+++...   +.+.+ |+.+     .+
T Consensus        11 ~V~~l~~s~dg~~latg~--~dg-----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~   78 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCS--SDK-----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   78 (753)
T ss_dssp             CEEEECCCSSSCCEEEEE--TTT-----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SC
T ss_pred             eeEEEEECCCCCeEEEEE--CCC-----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----Ce
Confidence            34444443 466777777  665     355666665566554443   34444456542   44444 6653     46


Q ss_pred             eEEEecCCCC--ccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcC
Q 012294          244 IMVYDINSLK--PVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKD  318 (466)
Q Consensus       244 VE~YDp~t~~--~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~  318 (466)
                      |-.||..+.+  .+..+..      .   ..+...+.|.+-. +.++++|+.|      ++|.+||.++++  .......
T Consensus        79 I~vwd~~~~~~~~~~~~~~------h---~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAV------H---SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             EEEEEEETTEEEEEEEECC------C---SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEEC
T ss_pred             EEEEECCCCcccccccccC------C---CCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeec
Confidence            8899998821  1111110      0   0122345565542 6677777744      489999999883  2345555


Q ss_pred             CcccccceeeecC------------CCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-C
Q 012294          319 EVDCFSDVTVSDN------------LSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-A  385 (466)
Q Consensus       319 ~~d~~~~~~v~~~------------~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~  385 (466)
                      +...+..+..++.            ++.++.+|+.+|.+.+-|+++..  .++..+..    +..  ..+.=..++.. +
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~----~~~--h~~~V~~l~~sp~  215 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLEST----LEG--HSDWVRDVAWSPT  215 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--TEEEEEEE----ECC--CSSCEEEEEECCC
T ss_pred             CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--ccceeeee----ecC--CCCcEEEEEeccC
Confidence            6666677777774            35567789999999999999844  44444443    221  11111223333 1


Q ss_pred             ---CEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEE
Q 012294          386 ---NQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEV  458 (466)
Q Consensus       386 ---~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~v  458 (466)
                         +.++++  .++.|.||.--    ..  ++ .....++.     .  ....+.|+.+++-  |..|+..- ....|-|
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~----~~--~~-~~~~~~~~-----~--~~~~~~v~~l~~spdg~~l~s~s-~Dg~I~v  280 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQD----NE--QG-PWKKTLLK-----E--EKFPDVLWRASWSLSGNVLALSG-GDNKVTL  280 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEES----SS--SS-CCBCCBSS-----S--SCCSSCCCCEEECTTTCCEEEEC-SSSCEEC
T ss_pred             CCCCCEEEEEecCCEEEEecCC----CC--CC-cceeEEec-----c--CCCCCceEEEEEcCCCCEEEEEc-CCCEEEE
Confidence               344444  56789999763    11  00 00111110     0  1245567777763  44555444 4556999


Q ss_pred             eccCC
Q 012294          459 WQSSS  463 (466)
Q Consensus       459 w~~~~  463 (466)
                      |+...
T Consensus       281 wd~~~  285 (753)
T 3jro_A          281 WKENL  285 (753)
T ss_dssp             CBCCS
T ss_pred             EecCC
Confidence            98653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.57  E-value=0.008  Score=58.88  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=96.1

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC--CeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD--KHLFV-SFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~--~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      .+++.|+  .+|     .+..||..+.+.......   ...+.+++...  +.+++ |+.     ..+|-.||..+ +.+
T Consensus        87 ~~l~s~~--~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~-~~~  153 (383)
T 3ei3_B           87 TTVAVGS--KGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-----RGATTLRDFSG-SVI  153 (383)
T ss_dssp             TEEEEEE--BTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-----TTEEEEEETTS-CEE
T ss_pred             CEEEEEc--CCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-----CCEEEEEECCC-Cce
Confidence            5778887  554     466777777665544332   34444466665  24444 654     35788999987 111


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCce
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                      ..+..     ..... .....+.|.+ ++.++++|+.|      +.|.+||. +++.+.....+......+..++++..+
T Consensus       154 ~~~~~-----~~~~~-~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          154 QVFAK-----TDSWD-YWYCCVDVSV-SRQMLATGDST------GRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEC-----CCCSS-CCEEEEEEET-TTTEEEEEETT------SEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEec-----cCCCC-CCeEEEEECC-CCCEEEEECCC------CCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            11111     01100 1123455655 45566677644      48999999 577889998888888899999999877


Q ss_pred             EEEEEeeCceeEeeccccC
Q 012294          336 YKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       336 ~~v~~~~g~l~~~dlr~~~  354 (466)
                      +..|+.+|.|.+-|+++.+
T Consensus       220 l~s~~~d~~i~iwd~~~~~  238 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIK  238 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCC
T ss_pred             EEEEeCCCEEEEEeCCCCC
Confidence            8899999999999999865

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.56  E-value=0.02  Score=54.53  Aligned_cols=245  Identities=13%  Similarity=0.154  Sum_probs=132.2

Q ss_pred             ccceeeeeecccCC----cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CCe-EEEEecCCC
Q 012294          168 THFTAVDSLLALSP----GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DKH-LFVSFESGR  238 (466)
Q Consensus       168 ~~~~~v~sl~~l~~----~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~~-IYaGg~~g~  238 (466)
                      .+-..+.++++...    .+.+.|+  .+|.     +..||..+........+   ...+.+++.. ++. |++|+.   
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~--~dg~-----i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---  106 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGS--WAND-----VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC---  106 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEE--TTSE-----EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---
T ss_pred             CCCCceEEEEEcCCCCCceEEEEEC--CCCc-----EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC---
Confidence            33455666666654    7788887  6553     45566655322221111   3334445555 344 444655   


Q ss_pred             cCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEE-eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          239 RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV-SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       239 ~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~-~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                        ...|-.||..+.+.+...++..          +...+.|. ..++.++++|+.|      ++|.+||.++++++....
T Consensus       107 --dg~v~iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A          107 --DKTAKMWDLSSNQAIQIAQHDA----------PVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             --TSEEEEEETTTTEEEEEEECSS----------CEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEEEE
T ss_pred             --CCcEEEEEcCCCCceeeccccC----------ceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEEEe
Confidence              3578999999855444333311          23345564 2466777788754      479999999999998887


Q ss_pred             CCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC-----CEEEEEe
Q 012294          318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA-----NQVFCGK  392 (466)
Q Consensus       318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~-----~~lf~~~  392 (466)
                      .+.   .-..++.... ...++..++.+.+-|++...  .++..+..   ...   ....-..+....     +-+..+.
T Consensus       169 ~~~---~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          169 LPE---RCYCADVIYP-MAVVATAERGLIVYQLENQP--SEFRRIES---PLK---HQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSS---CEEEEEEETT-EEEEEEGGGCEEEEECSSSC--EEEEECCC---SCS---SCEEEEEEEECTTSCEEEEEEEET
T ss_pred             cCC---CceEEEecCC-eeEEEeCCCcEEEEEecccc--chhhhccc---ccc---CCCceEEEcccCCCCCCeEEEecC
Confidence            665   2233444444 44578889999999998754  22333322   111   010111111111     1455568


Q ss_pred             CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc-------cCCCCceEEEeeecc-eeEEEeeccceEEEeccCC
Q 012294          393 GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT-------DMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       393 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-------~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~~  463 (466)
                      ++.|.+|.--...         ..+.++  .+-++..       ......|+.+++--| +++++=.....|-||+...
T Consensus       237 dg~i~i~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          237 EGRVAIHYINPPN---------PAKDNF--TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             TSEEEEEESSCSC---------HHHHSE--EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCcEEEEecCCCC---------ccccce--eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence            8899999753110         001110  0111110       001125998888533 3555556667799998653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.56  E-value=0.003  Score=60.46  Aligned_cols=199  Identities=8%  Similarity=0.120  Sum_probs=111.9

Q ss_pred             eeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC---CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY---NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~---~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      .|..||..+.+.+..+....    ..-.......+.|.+-.   +.++++|+.||      .|.+||.++++++.++..+
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg------~i~v~d~~~~~~~~~~~~~  114 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYV----DADADENFYTCAWTYDSNTSHPLLAVAGSRG------IIRIINPITMQCIKHYVGH  114 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEE----CSCTTCCEEEEEEEECTTTCCEEEEEEETTC------EEEEECTTTCCEEEEEESC
T ss_pred             EEEEEEcCCCcEEEeeeecc----ccCCCCcEEEEEeccCCCCCCCEEEEecCCC------EEEEEEchhceEeeeecCC
Confidence            68899998744433333211    00000123445666532   57888888544      8999999999999999989


Q ss_pred             cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE-eCCeE
Q 012294          320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEI  396 (466)
Q Consensus       320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~  396 (466)
                      .+.+..+...+++..++..|+.+|.|.+-|++..+.   -..+..    +..  ....=..++..  +..|+++ .++.|
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~----~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i  185 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL---VAIFGG----VEG--HRDEVLSADYDLLGEKIMSCGMDHSL  185 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE---EEEECS----TTS--CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE---EEEecc----ccc--ccCceeEEEECCCCCEEEEecCCCCE
Confidence            888889999996666677899999999999987431   111211    010  11111222222  3455544 57899


Q ss_pred             EEeEeeeecCC--------CCCCCCCc---ccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          397 ELWSEIVMGSR--------KSREGGPL---EERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       397 ~v~~~~~~~~~--------~~~~~~~~---~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      .+|.--.....        .+..+..+   +....-  ..-.......+.|..+++-|+ ++++-.....|-||+...
T Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF--PDFSTRDIHRNYVDCVRWLGD-LILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC--CSEEECSSCSSCCCEEEEETT-EEEEECSSSEEEEEEESS
T ss_pred             EEEECCCCccccccceeEEecCCCCcccccceeecc--CccccccCCcceEEEEEEcCC-EEEEEecCCEEEEEeCCC
Confidence            99975311000        00000000   000000  000011125667999999866 555555667899998543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0012  Score=72.50  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=112.0

Q ss_pred             cCCcEEEEcC--CceeeEecCC---CCCCCccccceeeeeeccc-C--CcEEEEecccCCCceeccceeeeeCCCCceee
Q 012294          141 NYGTLHVSHG--SKITSFDWSM---RKKSTILTHFTAVDSLLAL-S--PGVAAAGATDFSGLQVLDLENGYVKETLNWEN  212 (466)
Q Consensus       141 ~~g~lyva~G--G~ve~YDW~~---a~m~~~R~~~~~v~sl~~l-~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~  212 (466)
                      +++...+++|  |.+..||...   ....+...+-+.+.++.+. +  +..++.|+  .+|.     +-.||..+.+|..
T Consensus        19 ~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg~-----I~vwd~~~~~~~~   91 (753)
T 3jro_A           19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGK-----VLIWKEENGRWSQ   91 (753)
T ss_dssp             SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTSC-----EEEEEEETTEEEE
T ss_pred             CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCCe-----EEEEECCCCcccc
Confidence            4555443433  4455666321   1122222333455566664 3  67888888  6653     5667777777655


Q ss_pred             cCCC---CCceeEEEEEC---CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee---
Q 012294          213 VTRS---SSTVQAIGSSD---KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS---  282 (466)
Q Consensus       213 va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~---  282 (466)
                      +..+   ...+.+++...   +.+++ |+.     ..+|-.||..+......+...   +..    .....+.|.+.   
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~~~~~~~~~---~~~----~~v~~l~~~p~~~~  159 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIID---AHA----IGVNSASWAPATIE  159 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSSCCCCEEEE---CCS----SCEEEEEECCCC--
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCCCcceeEee---cCC----CceEEEEecCcccc
Confidence            5443   33444455553   44555 665     357899999883221111100   000    01223445443   


Q ss_pred             ---------CCeEEEEeecCCCCcccceEEEEeCCCC----eeeeEEcCCcccccceeeecCC--CceEEEEEeeCceeE
Q 012294          283 ---------YNLLLASGSHSDISKVTGNIKFWDIRSG----NVAWEVKDEVDCFSDVTVSDNL--SAIYKVGINSGEVSY  347 (466)
Q Consensus       283 ---------~~~Lyv~Gg~~g~~~~~~sVe~yDprt~----~~vW~~~~~~d~~~~~~v~~~~--~~i~~v~~~~g~l~~  347 (466)
                               ++.++++|+.||      +|.+||.+++    +++-+...|......+..++++  +.++..|+.+|.+.+
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             -------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             cccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence                     467777887544      7999999988    4445566677777888889885  666778999999999


Q ss_pred             eeccccC
Q 012294          348 MDLRKLG  354 (466)
Q Consensus       348 ~dlr~~~  354 (466)
                      -|+++.+
T Consensus       234 wd~~~~~  240 (753)
T 3jro_A          234 WTQDNEQ  240 (753)
T ss_dssp             EEESSSS
T ss_pred             ecCCCCC
Confidence            9999854

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.55  E-value=0.004  Score=59.83  Aligned_cols=186  Identities=12%  Similarity=0.111  Sum_probs=103.2

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCC-CCccccceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCc--e
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKK-STILTHFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLN--W  210 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m-~~~R~~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W  210 (466)
                      ..+++.+.+.++  |.+..||+.. ... .....+-..+.++++.  ++.+++.|+  .++     ++-.||..+..  .
T Consensus       105 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs--~D~-----~v~iwd~~~~~~~~  177 (304)
T 2ynn_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDR-----TVKVWSLGQSTPNF  177 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE--TTS-----EEEEEETTCSSCSE
T ss_pred             EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe--CCC-----eEEEEECCCCCccc
Confidence            345565553433  3456666433 111 1112222344555554  457888888  665     34555554322  1


Q ss_pred             eecCCCCCceeEEEEE---CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294          211 ENVTRSSSTVQAIGSS---DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL  286 (466)
Q Consensus       211 ~~va~Mr~~~~Ava~l---~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L  286 (466)
                      .....-...+..+...   ++.+.+ |+.     ..+|-.||..+.+.+.++...     ..    ....+.|.+ ++.+
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~h-----~~----~v~~~~~~p-~~~~  242 (304)
T 2ynn_A          178 TLTTGQERGVNYVDYYPLPDKPYMITASD-----DLTIKIWDYQTKSCVATLEGH-----MS----NVSFAVFHP-TLPI  242 (304)
T ss_dssp             EEECCCTTCEEEEEECCSTTCCEEEEEET-----TSEEEEEETTTTEEEEEEECC-----SS----CEEEEEECS-SSSE
T ss_pred             eeccCCcCcEEEEEEEEcCCCCEEEEEcC-----CCeEEEEeCCCCccceeeCCC-----CC----CEEEEEECC-CCCE
Confidence            1110111222223332   344444 655     457999999985444433211     11    112334444 4556


Q ss_pred             EEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          287 LASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       287 yv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      +++|+.||      +|.+||.++.+++.+...+.+....++..+++..+|.+++.++.+.+.++..
T Consensus       243 l~s~s~Dg------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          243 IISGSEDG------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEEETTS------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             EEEEcCCC------eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            77887554      7999999999999999887666667777888887766777776666665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.55  E-value=0.0015  Score=63.77  Aligned_cols=185  Identities=10%  Similarity=-0.024  Sum_probs=116.6

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      .++.||+..|  ..|.   +++..+|+.+.+=....++  +....+++..+++||+.-.    ..+.+-+||+.|++.+.
T Consensus        51 ~~~~LyestG--~~g~---S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw----~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           51 RNGYFYESTG--LNGR---SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW----KNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             ETTEEEEEEE--ETTE---EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES----SSSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECC--CCCC---ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe----eCCEEEEEECccCcEEE
Confidence            5789999999  5553   4577889998874433344  3334448999999999322    25789999999988887


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--cccccce-eeecCCC
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--VDCFSDV-TVSDNLS  333 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~-~v~~~~~  333 (466)
                      ++.-    ++.+|...        .-++.||++-|       .+.|..+||.|.+++-+..-.  +.++..+ .+...++
T Consensus       122 ti~~----~~eG~glt--------~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G  182 (262)
T 3nol_A          122 SFNY----DGEGWGLT--------HNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDG  182 (262)
T ss_dssp             EEEC----SSCCCCEE--------ECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETT
T ss_pred             EEEC----CCCceEEe--------cCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECC
Confidence            7765    33556542        23567888755       247999999999877554211  1122211 1222255


Q ss_pred             ceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc-cccccc-ceeEEEEE--CCEEEEEeC
Q 012294          334 AIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN-GKRKEG-FGCKIECH--ANQVFCGKG  393 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~-~~~~~~-~~~~~~~~--~~~lf~~~~  393 (466)
                      .||+-+-.+++|.++|.++.+ --.|+.++.-.+... . .+.+ .=-.||..  .+.||++-.
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~-~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGK-VTGIIDLNGILAEAGPL-PSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCB-EEEEEECTTGGGGSCSC-CSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEEccCCeEEEEECCCCc-EEEEEECCcCccccccc-cCcCCceEEEEEcCCCCEEEEECC
Confidence            899655589999999999866 334566654211110 0 1111 22345554  588998865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.49  E-value=0.012  Score=57.48  Aligned_cols=237  Identities=12%  Similarity=0.219  Sum_probs=128.2

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCC-
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSL-  252 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~-  252 (466)
                      ++.+.|.||  .++     ++..||..+.+|.....+    ...+.+++.. ++...| |+.     ..+|-.||..+. 
T Consensus        27 ~g~~las~~--~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-----D~~v~iw~~~~~~   94 (345)
T 3fm0_A           27 AGTLLASCG--GDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-----DATTCIWKKNQDD   94 (345)
T ss_dssp             TSSCEEEEE--TTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECCC-
T ss_pred             CCCEEEEEc--CCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-----CCcEEEEEccCCC
Confidence            567778888  655     355667776666432211    3344445554 344445 665     346788988761 


Q ss_pred             -CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC---eeeeEEcCCcccccceee
Q 012294          253 -KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG---NVAWEVKDEVDCFSDVTV  328 (466)
Q Consensus       253 -~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~~~~~~d~~~~~~v  328 (466)
                       +.+..+.      +..   .+...+.|.+ ++.++++|+.|+      +|.+||.+++   +++-....|.+....+..
T Consensus        95 ~~~~~~~~------~h~---~~v~~v~~sp-~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           95 FECVTTLE------GHE---NEVKSVAWAP-SGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEEEEEEC------CCS---SCEEEEEECT-TSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             eEEEEEcc------CCC---CCceEEEEeC-CCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence             1111111      110   0123455655 566777777544      7999999876   345566677766777888


Q ss_pred             ecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEEEeEeeeec
Q 012294          329 SDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIELWSEIVMG  405 (466)
Q Consensus       329 ~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~~~~  405 (466)
                      ++++.. +..|+.+|.+.+-|++.    +.|+++..    +.+  ..+.=..|+.. +|+.+++  .++.|.+|......
T Consensus       159 ~p~~~~-l~s~s~d~~i~~w~~~~----~~~~~~~~----~~~--h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          159 HPSQEL-LASASYDDTVKLYREEE----DDWVCCAT----LEG--HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             CSSSSC-EEEEETTSCEEEEEEET----TEEEEEEE----ECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred             CCCCCE-EEEEeCCCcEEEEEecC----CCEEEEEE----ecC--CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence            888765 45788999998888765    34555543    221  11111122222 3444443  67889999753211


Q ss_pred             CCCCCCCCCcc----cceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEeccC
Q 012294          406 SRKSREGGPLE----ERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       406 ~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~  462 (466)
                      ...     .+.    ...++  .+-.........|.++++-- +.++++=.....|.||+..
T Consensus       228 ~~~-----~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          228 NEQ-----GVACSGSDPSWK--CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             CTT-----CCCCC---CEEE--EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             CCc-----cceeeccCCccc--eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence            111     000    00000  00011111345688887742 2355566666789999643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.47  E-value=0.041  Score=52.44  Aligned_cols=235  Identities=9%  Similarity=0.176  Sum_probs=124.5

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC---CeEEE-EecCCCcCCCeeEEEecCC
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD---KHLFV-SFESGRRNSNSIMVYDINS  251 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~~l~sVE~YDp~t  251 (466)
                      -+++..|.|+  .++.     +..||....+...+..+   ...+-+++...   +.+.| |+.     ..+|-.||..+
T Consensus        19 ~~g~~las~s--~D~~-----v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-----D~~v~iWd~~~   86 (297)
T 2pm7_B           19 YYGKRMATCS--SDKT-----IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-----DGKVMIWKEEN   86 (297)
T ss_dssp             TTSSEEEEEE--TTSC-----EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----TTEEEEEEBSS
T ss_pred             CCCCEEEEEe--CCCE-----EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-----CCEEEEEEcCC
Confidence            4577888888  6653     45566554333222222   23344355542   55556 665     35789999987


Q ss_pred             C--CccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCCcccceEEEEeCCCCee--eeEEcCCcccccce
Q 012294          252 L--KPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDISKVTGNIKFWDIRSGNV--AWEVKDEVDCFSDV  326 (466)
Q Consensus       252 ~--~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~--vW~~~~~~d~~~~~  326 (466)
                      -  +.+..+..     ..    .+...+.|.+- .+.++++|+.|      ++|.+||.+++..  .-....|......+
T Consensus        87 ~~~~~~~~~~~-----h~----~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           87 GRWSQIAVHAV-----HS----ASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (297)
T ss_dssp             SCBCCCEEECC-----CS----SCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred             CceEEEEEeec-----CC----CceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecccCccceE
Confidence            2  11111110     00    11234556553 26677788754      4899999988731  23344454444455


Q ss_pred             eeecCC------------CceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC----CEEEE
Q 012294          327 TVSDNL------------SAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA----NQVFC  390 (466)
Q Consensus       327 ~v~~~~------------~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~----~~lf~  390 (466)
                      ..++++            +.++..|+.+|.+.+-|+++..  .+|.....    +.+  ....=..|+..-    +++++
T Consensus       152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--~~~~~~~~----l~~--H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLEST----LEG--HSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             EECCCC------------CCEEEEEETTSCEEEEEEETTT--TEEEEEEE----ECC--CSSCEEEEEECCCCSSSEEEE
T ss_pred             eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC--ceEEEEEE----ecC--CCCceEEEEECCCCCCceEEE
Confidence            555542            4577789999999999998733  34444433    221  111112233322    35665


Q ss_pred             E--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          391 G--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       391 ~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                      +  .++.|.+|.--    ..  . +.....++.     .  ....+.|..++|-  |..|+ +=.+...|-||+...
T Consensus       224 s~s~D~~v~iWd~~----~~--~-~~~~~~~~~-----~--~~~~~~v~~~~~s~~g~~la-s~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          224 SVSQDRTCIIWTQD----NE--Q-GPWKKTLLK-----E--EKFPDVLWRASWSLSGNVLA-LSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEETTSCEEEEEES----ST--T-SCCEEEESS-----S--SCCSSCEEEEEECSSSCCEE-EEETTSCEEEEEECT
T ss_pred             EEECCCcEEEEEeC----CC--C-Cccceeeee-----c--ccCCCcEEEEEECCCCCEEE-EEcCCCcEEEEEECC
Confidence            5  67889999752    11  0 001111111     0  0124568777774  54554 444556789998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.45  E-value=0.014  Score=58.22  Aligned_cols=192  Identities=14%  Similarity=0.101  Sum_probs=101.5

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecC
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT  214 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va  214 (466)
                      -.+++...++++  |.+..||... ........+-..+.++.+. ++..++.|+  .++     ++-.||..+.+-...-
T Consensus       131 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~-----~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDR-----TVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec--CCC-----cEEEEECCCCeeEEEE
Confidence            345666553432  3455555322 1111222223344455444 456677777  554     3556676665432221


Q ss_pred             CCCCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCcccccccccc-ccCCceeecCcceeeEEeeCCeEEEEe
Q 012294          215 RSSSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASG  290 (466)
Q Consensus       215 ~Mr~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~G  290 (466)
                      .....+.+++..  ++.+++ |+.     ..+|..||..+.+.+..+..... ..+.   ......+.|.+ ++.++++|
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~h---~~~v~~v~~~~-~g~~l~s~  274 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSL-----DRAVRVWDSETGFLVERLDSENESGTGH---KDSVYSVVFTR-DGQSVVSG  274 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEET-----TSCEEEEETTTCCEEEEEC------CCC---SSCEEEEEECT-TSSEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEECCCCcEEEeecccccCCCCC---CCCEEEEEECC-CCCEEEEE
Confidence            122223334444  456666 665     35689999988544433321110 0000   00122344443 56666778


Q ss_pred             ecCCCCcccceEEEEeCCCC------------eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          291 SHSDISKVTGNIKFWDIRSG------------NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       291 g~~g~~~~~~sVe~yDprt~------------~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +.||      +|.+||.++.            .+.-++.+|.+....++.++++..|. .|+.+|.+.+-|+++.
T Consensus       275 s~d~------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          275 SLDR------SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             ETTS------EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTC
T ss_pred             eCCC------EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCC
Confidence            7544      8999998764            34455666766667778888777654 7789999999998763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.45  E-value=0.011  Score=62.67  Aligned_cols=231  Identities=11%  Similarity=0.061  Sum_probs=130.2

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC-C-eEEEEecCCCcCCCeeEEEec--CCCCcc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD-K-HLFVSFESGRRNSNSIMVYDI--NSLKPV  255 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~-~-~IYaGg~~g~~~l~sVE~YDp--~t~~~~  255 (466)
                      ++.+|+.+.  .++     ++-.+|..+.+-...-+....+.++++.. + .||++..     .++|-+||+  .|.+.+
T Consensus       148 ~~~~~vs~~--~d~-----~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-----d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          148 PNLFSVTLR--DAG-----QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-----DARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             GGEEEEEEG--GGT-----EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCEEE
T ss_pred             CCEEEEEEc--CCC-----eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC-----CCeEEEEECcCCCCcEE
Confidence            456666665  322     34555666554322111111233355543 3 6888544     268999999  786555


Q ss_pred             ccccccccccCCceeecCcceeeEEe----eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc-----------
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVS----SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV-----------  320 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~----~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~-----------  320 (466)
                      .++....          .+..+.+.+    -+..||++.-.      .++|.+||..+.+++.+...++           
T Consensus       216 ~~i~~g~----------~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~  279 (543)
T 1nir_A          216 AEIKIGI----------EARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  279 (543)
T ss_dssp             EEEECCS----------EEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             EEEecCC----------CcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccC
Confidence            5443311          122333444    45577776642      3479999999999988775421           


Q ss_pred             ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE-EeccCCccccccccccceeEEEEECCEEEEE--eCCeEE
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI-CLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIE  397 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~-~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~  397 (466)
                      ...+.+.++.++..+|.-+..+|.|.+.|+...+.  ..+ .+....      .++  ...+.--+..+|++  ..+.|.
T Consensus       280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~--l~~~~i~~~~------~~~--~~~~spdg~~l~va~~~~~~v~  349 (543)
T 1nir_A          280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIGAAP------FLH--DGGWDSSHRYFMTAANNSNKVA  349 (543)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS--CEEEEEECCS------SCC--CEEECTTSCEEEEEEGGGTEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc--ceeEEeccCc------Ccc--CceECCCCCEEEEEecCCCeEE
Confidence            13456778888888776666889999999987542  111 111100      111  12222224457766  357899


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee-ecceeEEEee-ccceEEEeccCC
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF-GGNKMFVTRK-GQQTVEVWQSSS  463 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~-gg~r~f~~~~-~~~~~~vw~~~~  463 (466)
                      ||.--             +.++...--+++.++..+|.  .|.. .|.++|++=+ ..+.|-||++.+
T Consensus       350 v~D~~-------------tg~l~~~i~~g~~ph~g~g~--~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          350 VIDSK-------------DRRLSALVDVGKTPHPGRGA--NFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEETT-------------TTEEEEEEECSSSBCCTTCE--EEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEECC-------------CCeEEEeeccCCCCCCCCCc--ccCCCCCccEEEeccCCCceEEEEEeCC
Confidence            98642             11222222356656655553  2332 3567888854 678899998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.42  E-value=0.015  Score=54.54  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=38.3

Q ss_pred             eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEecc
Q 012294          311 NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       311 ~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~  364 (466)
                      +.+-+..+|.+....+..++++..| ..|+.+|.|.+-|+..   ...|.++..
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~---~~~~~~~~~  346 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKATY---SNEFKCMSV  346 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSSCCE-EEEETTSCEEEEEECT---TSCEEEEEE
T ss_pred             cEEEEEecccccEEEEEEcCCCCEE-EEecCCCcEEEEecCc---Ccchhheee
Confidence            5666777777788889999988754 4788999999999887   345777665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.40  E-value=0.0076  Score=68.93  Aligned_cols=243  Identities=14%  Similarity=0.144  Sum_probs=136.9

Q ss_pred             eeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEEC-CeEEE-EecCCCcCCCeeEE
Q 012294          171 TAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMV  246 (466)
Q Consensus       171 ~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~  246 (466)
                      ..+.++++- +++..|.|+  .+|     ++..||..+.+-...-.- ...+.+++... +...| |+.     ..+|-+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~--~d~-----~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~v~v  683 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCG--ADK-----TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-----DKKVKI  683 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEE
T ss_pred             ccEEEEEECCCCCEEEEEe--CCC-----eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-----CCeEEE
Confidence            344444443 567788888  655     466677766543221111 23344455553 44444 654     357999


Q ss_pred             EecCCCCccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccc
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSD  325 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~  325 (466)
                      ||..+.+.+..+...     ..    ....+.|.+- ++.++++|+.|      ++|.+||.++++++.+..+|.+....
T Consensus       684 wd~~~~~~~~~~~~~-----~~----~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEH-----SE----QVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             EETTTCCEEEEEECC-----SS----CEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             EECCCCceEEEEcCC-----CC----cEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhheecCCCCCEEE
Confidence            999995444433211     11    1223445443 55677777744      47999999999999999999888888


Q ss_pred             eeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccc-----ccc-ceeEEEEECCEEEEEeCCeEEEe
Q 012294          326 VTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKR-----KEG-FGCKIECHANQVFCGKGGEIELW  399 (466)
Q Consensus       326 ~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~-----~~~-~~~~~~~~~~~lf~~~~~~~~v~  399 (466)
                      +.+++++.. +..|+.+|.|.+-|+++....   ..+...........     ... ..+....-+..++++.++.+.+|
T Consensus       749 ~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          749 CRFSPDDEL-LASCSADGTLRLWDVRSANER---KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             EEECSSTTE-EEEEESSSEEEEEEGGGTEEE---EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             EEEecCCCE-EEEEECCCeEEEEeCCCCccc---ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            999998875 447889999999999875420   00110000000000     000 11222223566777778899999


Q ss_pred             EeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          400 SEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                      .-.    ..         +..+.-     .....+.|+.+++-  |..+ ++-.....|.||+...
T Consensus       825 d~~----~~---------~~~~~~-----~~~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          825 DIH----TS---------GLLAEI-----HTGHHSTIQYCDFSPYDHLA-VIALSQYCVELWNIDS  871 (1249)
T ss_dssp             ETT----TC---------CEEEEE-----ECSSSSCCCEEEECSSTTEE-EEECSSSCEEEEETTT
T ss_pred             Eec----CC---------CceeEE-----cCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Confidence            753    11         111110     01234456666554  4444 4445566799998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.39  E-value=0.022  Score=54.20  Aligned_cols=234  Identities=13%  Similarity=0.116  Sum_probs=120.9

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCc----eeecCCCCCceeEEEEE-CCe--EEEEecCCCcCCCeeEEEec-CC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLN----WENVTRSSSTVQAIGSS-DKH--LFVSFESGRRNSNSIMVYDI-NS  251 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~----W~~va~Mr~~~~Ava~l-~~~--IYaGg~~g~~~l~sVE~YDp-~t  251 (466)
                      ++.++++|+  .+|.     +..||..+..    -.........+.+++.. ++.  |++|+.     ...|-.||. .+
T Consensus        22 ~~~~l~~~~--~d~~-----v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~   89 (342)
T 1yfq_A           22 SKSLLLITS--WDGS-----LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QGEILKVDLIGS   89 (342)
T ss_dssp             GGTEEEEEE--TTSE-----EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TSCEEEECSSSS
T ss_pred             CCCEEEEEc--CCCe-----EEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CCeEEEEEeccC
Confidence            456677777  5542     4445444433    11111112333335554 445  554665     347899999 77


Q ss_pred             CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCC---------CeeeeEEcCCccc
Q 012294          252 LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS---------GNVAWEVKDEVDC  322 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt---------~~~vW~~~~~~d~  322 (466)
                      .+.       ..+.+. ........+.|.+  +.++++|+.      .+.|.+||.++         ++++.+.. +...
T Consensus        90 ~~~-------~~~~~~-~~~~~v~~l~~~~--~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~  152 (342)
T 1yfq_A           90 PSF-------QALTNN-EANLGICRICKYG--DDKLIAASW------DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK  152 (342)
T ss_dssp             SSE-------EECBSC-CCCSCEEEEEEET--TTEEEEEET------TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred             Cce-------Eecccc-CCCCceEEEEeCC--CCEEEEEcC------CCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence            322       111110 0011234566777  445556663      44899999998         77777665 4445


Q ss_pred             ccceeeecCCCceEEEEEeeCceeEeeccc-cCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEE--eCCeEE
Q 012294          323 FSDVTVSDNLSAIYKVGINSGEVSYMDLRK-LGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG--KGGEIE  397 (466)
Q Consensus       323 ~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~-~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~--~~~~~~  397 (466)
                      ...+..++++   +.++..+|.|.+-|++. ...  +......     .  ... .-..++..  +++++++  .++.|.
T Consensus       153 v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~--~~~~~~~-----~--~~~-~i~~i~~~~~~~~~l~~~~~dg~i~  219 (342)
T 1yfq_A          153 IFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD--NGTIEES-----G--LKY-QIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             EEEEEECSSE---EEEEESTTEEEEEESSCCTTC--CCEEEEC-----S--CSS-CEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             eEEEEecCCc---EEEEeCCCeEEEEECCccccc--cceeeec-----C--CCC-ceeEEEECCCCCCEEEEEecCCcEE
Confidence            5666666665   55888999999999998 441  1121111     0  011 12233343  3444433  667899


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccc----cCCCCceEEEeeec-ceeEEEeeccceEEEeccCC
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVT----DMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ||.--...+..  ...  ....++.    +..    ....+.|..+++-- ++++++=.+...|-||+...
T Consensus       220 i~~~~~~~~~~--~~~--~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          220 VEFFDDQGDDY--NSS--KRFAFRC----HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EEECCTTCCST--TCT--TCEEEEC----CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             EEEEcCCCccc--ccc--cceeeec----ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            98742100000  000  1112221    111    01244799998853 34455556667899998653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.38  E-value=0.0078  Score=57.10  Aligned_cols=223  Identities=11%  Similarity=0.113  Sum_probs=119.3

Q ss_pred             ceeeeeCC--CCceeecCCC--CCceeEEEEEC-C-eEEEEecCCCcCCCeeEEEec---CCCCccccccccccccCCce
Q 012294          199 LENGYVKE--TLNWENVTRS--SSTVQAIGSSD-K-HLFVSFESGRRNSNSIMVYDI---NSLKPVNEIGQNEIYGTDIE  269 (466)
Q Consensus       199 svE~ydp~--t~~W~~va~M--r~~~~Ava~l~-~-~IYaGg~~g~~~l~sVE~YDp---~t~~~~~~~~~~~~~~~~~w  269 (466)
                      .+..|+..  +.++..+...  ......++... + .||+++..    .+.|.+||.   .+.+.+..+..      .. 
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~------~~-  129 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVTRLEDGLPVGVVDVVEG------LD-  129 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEEEEETTEEEEEEEEECC------CT-
T ss_pred             eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC----CCeEEEEECCCCccccccccccC------CC-
Confidence            45566554  5566544333  12233345543 3 48884431    356899998   33222222211      00 


Q ss_pred             eecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-Ceeee----EEcC-CcccccceeeecCCCceEEEEEeeC
Q 012294          270 SAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAW----EVKD-EVDCFSDVTVSDNLSAIYKVGINSG  343 (466)
Q Consensus       270 ~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW----~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g  343 (466)
                         .+..+.|.+-++.||+++..      .+.|.+||..+ +++.-    .... .+.....+.+++++..||.++..++
T Consensus       130 ---~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          130 ---GCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             ---TBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ---CceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence               13345566666688887742      34799999998 65321    1221 2323345788999999998877899


Q ss_pred             ceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEE--CCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccc
Q 012294          344 EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECH--ANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEER  418 (466)
Q Consensus       344 ~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~--~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~  418 (466)
                      .+.+.|+....  ..+..+..-.. ........ .-..++..  +..||++-  ++.|.||.--    ..   ++  +-+
T Consensus       201 ~i~~~~~~~~~--g~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~----~~---~~--~~~  268 (343)
T 1ri6_A          201 SVDVWELKDPH--GNIECVQTLDM-MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS----ED---GS--VLS  268 (343)
T ss_dssp             EEEEEESSCTT--SCCEEEEEEEC-SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC----TT---SC--CEE
T ss_pred             EEEEEEecCCC--CcEEEEeeccc-cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc----CC---CC--ceE
Confidence            99999996532  22222221000 00000000 11134444  45788764  5789999753    11   01  111


Q ss_pred             eeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEec
Q 012294          419 VFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       419 ~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~  460 (466)
                      ....     .  ..++.+..+++-  |.+||++-.+...|.||+
T Consensus       269 ~~~~-----~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          269 KEGF-----Q--PTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEE-----E--ECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             Eeee-----e--cCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            1111     0  112236666664  888999998889999994

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.021  Score=54.43  Aligned_cols=184  Identities=12%  Similarity=0.126  Sum_probs=105.6

Q ss_pred             CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294          242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD  321 (466)
Q Consensus       242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d  321 (466)
                      ..|.+||..+.+.+..+....     .    ....+.|.+ ++.++++|+.|      ++|.+||.++++++..+. +..
T Consensus        54 g~i~vwd~~~~~~~~~~~~h~-----~----~v~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~-~~~  116 (369)
T 3zwl_B           54 SSASVWYSLNGERLGTLDGHT-----G----TIWSIDVDC-FTKYCVTGSAD------YSIKLWDVSNGQCVATWK-SPV  116 (369)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----S----CEEEEEECT-TSSEEEEEETT------TEEEEEETTTCCEEEEEE-CSS
T ss_pred             CEEEEEeCCCchhhhhhhhcC-----C----cEEEEEEcC-CCCEEEEEeCC------CeEEEEECCCCcEEEEee-cCC
Confidence            468899998855544443211     1    123445554 55566777744      489999999999998887 555


Q ss_pred             cccceeeecCCCceEEEEEee-----CceeEeeccccCCCCCeEEeccCCcc-ccccccccceeE-EEE--ECCEEEEE-
Q 012294          322 CFSDVTVSDNLSAIYKVGINS-----GEVSYMDLRKLGDSSEWICLGDGRKM-VNGKRKEGFGCK-IEC--HANQVFCG-  391 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~~-----g~l~~~dlr~~~~~~~W~~~~~~~~~-m~~~~~~~~~~~-~~~--~~~~lf~~-  391 (466)
                      ....+..++++..|+ ++..+     |.|.+.|++.......+......... +.. ........ ++.  -+..|+++ 
T Consensus       117 ~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          117 PVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             CEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEE
T ss_pred             CeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-CcCccceeEEEEcCCCCEEEEEc
Confidence            667788888887755 55566     99999999986643233322221110 110 00100111 111  13345544 


Q ss_pred             eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccCC
Q 012294          392 KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       392 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      .++.|.+|.--    ..    +. .-..+.         ...+.|..+++  -|+.| ++-.....|-||+...
T Consensus       195 ~dg~i~i~d~~----~~----~~-~~~~~~---------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          195 KDGKISKYDVS----NN----YE-YVDSID---------LHEKSISDMQFSPDLTYF-ITSSRDTNSFLVDVST  249 (369)
T ss_dssp             TTSEEEEEETT----TT----TE-EEEEEE---------CCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTT
T ss_pred             CCCEEEEEECC----CC----cE-eEEEEe---------cCCCceeEEEECCCCCEE-EEecCCceEEEEECCC
Confidence            66889999752    10    00 111111         14567998888  45444 4445566799998653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.37  E-value=0.018  Score=62.21  Aligned_cols=188  Identities=11%  Similarity=0.122  Sum_probs=110.5

Q ss_pred             eecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecC
Q 012294          139 TTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT  214 (466)
Q Consensus       139 a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va  214 (466)
                      -.+++...++++  |.+..||+.. ....+...+-..+.++++. ++...++|+  .+|     ++..||..+. |....
T Consensus        63 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg-----~i~vw~~~~~-~~~~~  134 (814)
T 3mkq_A           63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDL-----TVKLWNWENN-WALEQ  134 (814)
T ss_dssp             EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTS-----EEEEEEGGGT-SEEEE
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc--CCC-----EEEEEECCCC-ceEEE
Confidence            345665553433  4456666544 3222222233445555554 455667777  554     3556666554 22111


Q ss_pred             CC---CCceeEEEEEC--CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEee-CCeEE
Q 012294          215 RS---SSTVQAIGSSD--KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLL  287 (466)
Q Consensus       215 ~M---r~~~~Ava~l~--~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Ly  287 (466)
                      .+   ...+.+++...  +.+++ |+.     ..+|-.||..+.++...+....        ......+.|.+. ++.++
T Consensus       135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEE
T ss_pred             EEcCCCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEE
Confidence            11   23344456653  44555 655     3578999998733322222100        011223445442 56667


Q ss_pred             EEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          288 ASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       288 v~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++|+.+      +.|.+||.++++++.+...+...+..+..++++.. +.+|+.+|.|.+-|+++..
T Consensus       202 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          202 ITASDD------LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             EEECTT------SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCS
T ss_pred             EEEeCC------CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCc
Confidence            777644      47999999999999999888777788888988875 4478899999999988743

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.36  E-value=0.004  Score=63.01  Aligned_cols=157  Identities=10%  Similarity=0.063  Sum_probs=95.5

Q ss_pred             cceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCC
Q 012294          169 HFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNS  241 (466)
Q Consensus       169 ~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l  241 (466)
                      +-+.|.++.+.  ++.+++.|+  .+|.     +-.+|..+..-.....-   ...+.+++.. ++.+.+ |+.     .
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s--~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----d  230 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASS--MEGT-----TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----V  230 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEEC--SSSC-----EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----S
T ss_pred             CCCCEEEEEEeCCCCCEEEEEe--CCCE-----EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----C
Confidence            44567777774  577888888  6653     44566665543322221   1222224444 445555 655     3


Q ss_pred             CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE---EcC
Q 012294          242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE---VKD  318 (466)
Q Consensus       242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~---~~~  318 (466)
                      ..|-.||..+- .+..+.     +...    ....+.|.+.++.++++|+.|+      +|.+||.++.+..-+   ..+
T Consensus       231 g~i~~wd~~~~-~~~~~~-----~h~~----~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~~~~~  294 (435)
T 4e54_B          231 GNVILLNMDGK-ELWNLR-----MHKK----KVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFLYSLP  294 (435)
T ss_dssp             SBEEEEESSSC-BCCCSB-----CCSS----CEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCSBCCB
T ss_pred             CcEeeeccCcc-eeEEEe-----cccc----eEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEEEeee
Confidence            56889998761 111111     1111    1234556666777888888554      799999998764322   234


Q ss_pred             CcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |.+.+..+..++++..|+ .|+.+|.|.+-|+++.+
T Consensus       295 h~~~v~~~~~spdg~~l~-s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          295 HRHPVNAACFSPDGARLL-TTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             CSSCEEECCBCTTSSEEE-EEESSSCEEEEESSSSS
T ss_pred             ccccccceeECCCCCeeE-EEcCCCEEEEEECCCCc
Confidence            566667777888887754 78899999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.35  E-value=0.18  Score=53.47  Aligned_cols=204  Identities=12%  Similarity=0.099  Sum_probs=113.4

Q ss_pred             cccCCCCCCCCCceeeecCCcEEE-EcCCceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccce
Q 012294          124 LILPLNGRDSPSAIATTNYGTLHV-SHGSKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLE  200 (466)
Q Consensus       124 a~l~~~~R~~~~a~~a~~~g~lyv-a~GG~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~sv  200 (466)
                      ++.+...|....++...++|...+ +.++.+..+|... ....+...+-..+.++++- ++++.|.|+  .+|.     +
T Consensus        11 ~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~--~d~~-----v   83 (611)
T 1nr0_A           11 PSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD--VHGN-----V   83 (611)
T ss_dssp             CCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE--TTSE-----E
T ss_pred             CCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEe--CCCC-----E
Confidence            334434566655555667775442 3333333433322 2222222223344444443 467888888  6653     5


Q ss_pred             eeeeCCCCceeecCCC---CCceeEEEEEC-Ce-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294          201 NGYVKETLNWENVTRS---SSTVQAIGSSD-KH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT  275 (466)
Q Consensus       201 E~ydp~t~~W~~va~M---r~~~~Ava~l~-~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~  275 (466)
                      ..+|..+.+......+   ...+.+++... +. |.+++.+... ...|-.||..+  ...++..     +..    +..
T Consensus        84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~~~--~~~~l~g-----h~~----~v~  151 (611)
T 1nr0_A           84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGT--SNGNLTG-----QAR----AMN  151 (611)
T ss_dssp             EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCC--BCBCCCC-----CSS----CEE
T ss_pred             EEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeCCC--CcceecC-----CCC----Cce
Confidence            5566543322111111   22333455553 34 4445442211 34677777433  1111111     111    223


Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .+.|.+-+..++++|+.|+      +|.+||.++.+++-++.+|.+....+..++++.. +..|+.+|.+.+-|++..
T Consensus       152 ~v~f~p~~~~~l~s~s~D~------~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDN------TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             EEEECSSSSCEEEEEETTS------CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC
T ss_pred             EEEECCCCCeEEEEEeCCC------eEEEEECCCCeEeeeeccccCceEEEEECCCCCE-EEEEECCCcEEEEECCCC
Confidence            4556655556788888544      7999999999988899899888888999998765 557889999999988763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.34  E-value=0.05  Score=52.17  Aligned_cols=77  Identities=12%  Similarity=-0.019  Sum_probs=55.9

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      .+.|.+ ++.++++|+.|      +.|.+||.++++++.++..+...+..+..++++..|  +++.+|.+.+-|++... 
T Consensus       207 ~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~i~~~~~~~-  276 (372)
T 1k8k_C          207 GVCFSA-NGSRVAWVSHD------STVCLADADKKMAVATLASETLPLLAVTFITESSLV--AAGHDCFPVLFTYDSAA-  276 (372)
T ss_dssp             EEEECS-SSSEEEEEETT------TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE--EEETTSSCEEEEEETTT-
T ss_pred             EEEECC-CCCEEEEEeCC------CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEE--EEEeCCeEEEEEccCcC-
Confidence            444554 44556666643      479999999999999998887777888888887643  34499999999998832 


Q ss_pred             CCCeEEec
Q 012294          356 SSEWICLG  363 (466)
Q Consensus       356 ~~~W~~~~  363 (466)
                       +.|..+.
T Consensus       277 -~~~~~~~  283 (372)
T 1k8k_C          277 -GKLSFGG  283 (372)
T ss_dssp             -TEEEECC
T ss_pred             -ceEEEee
Confidence             4465553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.31  E-value=0.011  Score=57.75  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             eeeeecccCCcEEEEecccCCCceeccceeeeeCCCCc----eeecCCC---CCceeEEEEEC-----C---eEEE-Eec
Q 012294          172 AVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLN----WENVTRS---SSTVQAIGSSD-----K---HLFV-SFE  235 (466)
Q Consensus       172 ~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~----W~~va~M---r~~~~Ava~l~-----~---~IYa-Gg~  235 (466)
                      .+.++++ ++.+++.|+  .+|     .+..||..+.+    +..+..+   ...+.+++...     +   .+.+ |+.
T Consensus        18 ~i~~~~~-~~~~l~s~~--~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~   89 (397)
T 1sq9_A           18 DIFSVSA-CNSFTVSCS--GDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   89 (397)
T ss_dssp             CEEEEEE-CSSEEEEEE--TTS-----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CeEEEEe-cCCeEEEEc--CCC-----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence            4444444 447788888  655     34556655544    2222222   23333355443     4   5555 655


Q ss_pred             CCCcCCCeeEEEecCCCCc-----cccccccccccCCcee--ecCcceeeEE----eeCCeEEEEeecCCCCcccceEEE
Q 012294          236 SGRRNSNSIMVYDINSLKP-----VNEIGQNEIYGTDIES--AIPATKLRWV----SSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       236 ~g~~~l~sVE~YDp~t~~~-----~~~~~~~~~~~~~~w~--~~~~~k~~~~----~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                           ...|..||..+.+.     +..+..      ..-.  ......+.|.    +-++.++++|+.+      +.|.+
T Consensus        90 -----dg~i~iw~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~i  152 (397)
T 1sq9_A           90 -----SGDLLFYRITREDETKKVIFEKLDL------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------GTTYI  152 (397)
T ss_dssp             -----TSCEEEEEEEECTTTCCEEEEEECC------SCTTGGGSCEEEEEEECCC----CEEEEEEETT------SCEEE
T ss_pred             -----CCCEEEEEccCCcccccccceeecc------cccccCCCcEEEEEEeeccCCCCceEEEEEeCC------CcEEE
Confidence                 35688999888432     222111      1000  1123455676    5455537777744      47999


Q ss_pred             EeCCC------Ceeee-----EE-------cCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          305 WDIRS------GNVAW-----EV-------KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       305 yDprt------~~~vW-----~~-------~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ||.++      ++.+.     ++       ..+......+.+++++  ++.+|..+|.|.+-|+++..
T Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE
T ss_pred             EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc
Confidence            99999      66665     55       3355666788888888  77788899999999998743

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.30  E-value=0.14  Score=51.20  Aligned_cols=230  Identities=15%  Similarity=0.219  Sum_probs=129.0

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECCeEEE-EecCCCcCCCeeEEEe
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYD  248 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YD  248 (466)
                      .|.++++. ++..+|+|+  .+|     ++..||..+.+-...-.- ...+.+++ .++.+.+ |+.     ...+..||
T Consensus       149 ~V~sv~fspdg~~lasgs--~Dg-----~v~iWd~~~~~~~~~~~~h~~~v~~~s-~~~~~l~sgs~-----d~~i~~~d  215 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGT--SSA-----EVQLWDVQQQKRLRNMTSHSARVGSLS-WNSYILSSGSR-----SGHIHHHD  215 (420)
T ss_dssp             CEEEEEECTTSSEEEEEE--TTS-----CEEEEETTTTEEEEEECCCSSCEEEEE-EETTEEEEEET-----TSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEE--CCC-----eEEEEEcCCCcEEEEEeCCCCceEEEe-eCCCEEEEEeC-----CCceeEee
Confidence            45666665 467888888  665     356677766542211111 33344344 3555555 655     35678888


Q ss_pred             cCCC-CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee----eEEcCCcccc
Q 012294          249 INSL-KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA----WEVKDEVDCF  323 (466)
Q Consensus       249 p~t~-~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v----W~~~~~~d~~  323 (466)
                      ..+. ..+..+..     ...    ....+.|. .++.++++|+.|+      .|.+||.++++..    .....+...+
T Consensus       216 ~~~~~~~~~~~~~-----h~~----~~~~~~~~-~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~V  279 (420)
T 4gga_A          216 VRVAEHHVATLSG-----HSQ----EVCGLRWA-PDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAV  279 (420)
T ss_dssp             TTSSSCEEEEEEC-----CSS----CEEEEEEC-TTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred             ecccceeeEEecc-----ccc----ceeeeeec-CCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCce
Confidence            8761 11111110     000    01122333 3566667777444      7999999987633    3444555556


Q ss_pred             cceeeecCCCceEEEEE--eeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEe---CCeEE
Q 012294          324 SDVTVSDNLSAIYKVGI--NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGK---GGEIE  397 (466)
Q Consensus       324 ~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~---~~~~~  397 (466)
                      ..+...+.+..++.+++  .++.|.+-|+++...      +..    ...  ... ........+++++++-   ++.|.
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~------~~~----~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC------LSA----VDA--HSQVCSILWSPHYKELISGHGFAQNQLV  347 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE------EEE----EEC--SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc------cee----ecc--ccceeeeeecCCCCeEEEEEecCCCEEE
Confidence            66777888888777755  788998888887431      111    111  111 2233333456666653   57899


Q ss_pred             EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEecc
Q 012294          398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~  461 (466)
                      ||.-.    ..        +.+ + -+-||     .+.|+.++|--| ++++|=.+-..|-||+-
T Consensus       348 iwd~~----~~--------~~v-~-~l~gH-----~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          348 IWKYP----TM--------AKV-A-ELKGH-----TSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EEETT----TC--------CEE-E-EECCC-----SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             EEECC----CC--------cEE-E-EEcCC-----CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            99753    11        111 1 12233     568999999632 46667677788999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.22  E-value=0.27  Score=52.07  Aligned_cols=271  Identities=13%  Similarity=0.125  Sum_probs=137.6

Q ss_pred             eeecCCcEEEEcCCc----eeeEecCC-CCCCCccccceeeeeecccCC--cEEEEecccCCCceeccceeeeeCCCCce
Q 012294          138 ATTNYGTLHVSHGSK----ITSFDWSM-RKKSTILTHFTAVDSLLALSP--GVAAAGATDFSGLQVLDLENGYVKETLNW  210 (466)
Q Consensus       138 ~a~~~g~lyva~GG~----ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~--~lYaiGG~~~~g~~~l~svE~ydp~t~~W  210 (466)
                      +-.+++...++.|..    ...+.|.. ....+...+-..+.++.+..+  .+++.|+  .++.     +-.||..+.+.
T Consensus       110 ~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s--~D~~-----v~lwd~~~~~~  182 (611)
T 1nr0_A          110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDNT-----VAIFEGPPFKF  182 (611)
T ss_dssp             EECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTSC-----EEEEETTTBEE
T ss_pred             EECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEe--CCCe-----EEEEECCCCeE
Confidence            334566655454421    24566876 444343444445555555543  3577777  5543     44555444322


Q ss_pred             eecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcccccccccc--ccCCceeecCcceeeEEeeCCe
Q 012294          211 ENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEI--YGTDIESAIPATKLRWVSSYNL  285 (466)
Q Consensus       211 ~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~--~~~~~w~~~~~~k~~~~~~~~~  285 (466)
                      ...-.- ...+.+++.. ++.++| |+.     ..+|-.||..+.+.+..+.....  .+...    ....+.|.+ ++.
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~las~s~-----D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~----~V~~v~~sp-dg~  252 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSLFASTGG-----DGTIVLYNGVDGTKTGVFEDDSLKNVAHSG----SVFGLTWSP-DGT  252 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTCCEEEECBCTTSSSCSSSS----CEEEEEECT-TSS
T ss_pred             eeeeccccCceEEEEECCCCCEEEEEEC-----CCcEEEEECCCCcEeeeeccccccccccCC----CEEEEEECC-CCC
Confidence            111011 2334445555 456666 665     35788999888544444311000  00011    223445554 566


Q ss_pred             EEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc-cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEecc
Q 012294          286 LLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD-CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGD  364 (466)
Q Consensus       286 Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~  364 (466)
                      ++++|+.|      ++|.+||.++++++-+...+.. ......+.-++.. +..+..+|.+.+-|++...      +...
T Consensus       253 ~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~i~~~~~~~~~------~~~~  319 (611)
T 1nr0_A          253 KIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFVNPELGS------IDQV  319 (611)
T ss_dssp             EEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC-EEEEETTCCEEEEETTTTE------EEEE
T ss_pred             EEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE-EEEEeCCCcEEEEeCCCCC------cceE
Confidence            77788744      4899999999997766643210 0011222333433 4467788888777765421      1111


Q ss_pred             CCccccccccccceeEEEEE-CC-EEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee
Q 012294          365 GRKMVNGKRKEGFGCKIECH-AN-QVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF  441 (466)
Q Consensus       365 ~~~~m~~~~~~~~~~~~~~~-~~-~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~  441 (466)
                          +.+ ... .=..++.. +| .|+.+ .++.|.+|.--    ..     . ..+.+        .....+.|..+++
T Consensus       320 ----~~g-h~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~----~~-----~-~~~~~--------~~~h~~~v~~~~~  375 (611)
T 1nr0_A          320 ----RYG-HNK-AITALSSSADGKTLFSADAEGHINSWDIS----TG-----I-SNRVF--------PDVHATMITGIKT  375 (611)
T ss_dssp             ----ECC-CSS-CEEEEEECTTSSEEEEEETTSCEEEEETT----TC-----C-EEECS--------SCSCSSCEEEEEE
T ss_pred             ----EcC-CCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECC----CC-----c-eeeec--------ccCCcceEEEEEE
Confidence                111 001 11112221 23 44433 67889999742    11     0 11111        1124567888888


Q ss_pred             ecceeEEEeeccceEEEeccC
Q 012294          442 GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       442 gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      -.+..+++=...+.+.+|+..
T Consensus       376 s~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          376 TSKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             CTTSCEEEEETTTEEEEECSS
T ss_pred             CCCCcEEEEEcCCceEEeecC
Confidence            655566666777789999854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.21  E-value=0.013  Score=55.67  Aligned_cols=190  Identities=9%  Similarity=0.068  Sum_probs=105.4

Q ss_pred             eecCCc-EEEEcC--CceeeEec-CCCCCCCccc--cceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCC---c
Q 012294          139 TTNYGT-LHVSHG--SKITSFDW-SMRKKSTILT--HFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETL---N  209 (466)
Q Consensus       139 a~~~g~-lyva~G--G~ve~YDW-~~a~m~~~R~--~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~---~  209 (466)
                      ..+++. ..++++  |.+..||. ..........  +-..+.++.+..+.+++.|+  .++.     +..||..+.   .
T Consensus        64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~--~d~~-----i~iwd~~~~~~~~  136 (342)
T 1yfq_A           64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS--WDGL-----IEVIDPRNYGDGV  136 (342)
T ss_dssp             EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE--TTSE-----EEEECHHHHTTBC
T ss_pred             ECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEc--CCCe-----EEEEccccccccc
Confidence            344565 443333  44556665 3322222222  33345555555577778887  5553     333443320   0


Q ss_pred             ----eeecCCC--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCC-CCccccccccccccCCceeecCcceeeEEee
Q 012294          210 ----WENVTRS--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINS-LKPVNEIGQNEIYGTDIESAIPATKLRWVSS  282 (466)
Q Consensus       210 ----W~~va~M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t-~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~  282 (466)
                          ...+...  ...+.+++...+.+++|+.     ...|..||..+ .+.....-. .  ...    .....+.|.+.
T Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~-~--~~~----~~i~~i~~~~~  204 (342)
T 1yfq_A          137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN-----NSQVQWFRLPLCEDDNGTIEE-S--GLK----YQIRDVALLPK  204 (342)
T ss_dssp             EEEEESCSSSSSSCCCEEEEEECSSEEEEEES-----TTEEEEEESSCCTTCCCEEEE-C--SCS----SCEEEEEECSG
T ss_pred             ccccCCeeeEEeeCCceEEEEecCCcEEEEeC-----CCeEEEEECCccccccceeee-c--CCC----CceeEEEECCC
Confidence                1111111  2334446777777666654     35789999887 331100000 0  000    01234455541


Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCC------eeeeEEcCCcc---------cccceeeecCCCceEEEEEeeCceeE
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSG------NVAWEVKDEVD---------CFSDVTVSDNLSAIYKVGINSGEVSY  347 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~------~~vW~~~~~~d---------~~~~~~v~~~~~~i~~v~~~~g~l~~  347 (466)
                      ++.++++|+.+      +.|.+||.+++      +.+.++..+..         ....+..++++..|+ .|+.+|.|.+
T Consensus       205 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v  277 (342)
T 1yfq_A          205 EQEGYACSSID------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDGIISC  277 (342)
T ss_dssp             GGCEEEEEETT------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTSCEEE
T ss_pred             CCCEEEEEecC------CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE-EecCCceEEE
Confidence            45667777744      47999998887      77777777644         677888888887654 7789999999


Q ss_pred             eeccccC
Q 012294          348 MDLRKLG  354 (466)
Q Consensus       348 ~dlr~~~  354 (466)
                      -|+++..
T Consensus       278 wd~~~~~  284 (342)
T 1yfq_A          278 WNLQTRK  284 (342)
T ss_dssp             EETTTTE
T ss_pred             EcCccHh
Confidence            9998743

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.21  E-value=0.02  Score=56.76  Aligned_cols=156  Identities=18%  Similarity=0.289  Sum_probs=87.1

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE-----cCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV-----KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~-----~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      +.+.+-.+..+++|+.|      ++|.+||.++++.+..+     .+|......+.+...+..++..|+.+|.+.+-|+|
T Consensus       163 ~~~~~~~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~  236 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR  236 (380)
T ss_dssp             CBCCSSSSSCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred             EEEecCCCCEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence            34445445556667644      47999999999988776     34555556666666667778899999999999998


Q ss_pred             ccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcc
Q 012294          352 KLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRV  428 (466)
Q Consensus       352 ~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  428 (466)
                      ..+.  +   +..    +.+  ..+.=..|+.. +++.+++  .++.|.+|.--     .   +.  .-..+...  ...
T Consensus       237 ~~~~--~---~~~----~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~-----~---~~--~~~~~~~~--~~~  293 (380)
T 3iz6_a          237 ITSR--A---VRT----YHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR-----T---GH--QLQVYNRE--PDR  293 (380)
T ss_dssp             TTCC--C---CEE----ECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETT-----T---TE--EEEEECCC--CSS
T ss_pred             CCCc--c---eEE----ECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECC-----C---Cc--EEEEeccc--ccc
Confidence            6431  1   110    111  01111122222 4555554  67889999742     1   00  11111110  001


Q ss_pred             ccCCCCceEEEee--ecceeEEEeeccceEEEeccC
Q 012294          429 TDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       429 ~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      .+.....|+.++|  .|..|++. .....|-||+..
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~vwd~~  328 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAG-YSNGDCYVWDTL  328 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEE-CTTSCEEEEETT
T ss_pred             cccccCceEEEEECCCCCEEEEE-ECCCCEEEEECC
Confidence            1122334666555  56555555 445678999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.20  E-value=0.0082  Score=58.59  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=102.8

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      +.||+..|  ..+.   +++..+|+.+.+=...-++  +....+++..++.||+...    ..+.+.+||+.|++.+.++
T Consensus        32 g~Lyvstg--~~~~---s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~----~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           32 DTLFESTG--LYGR---SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW----LKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             TEEEEEEC--STTT---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET----TCSEEEEEETTTTEEEEEE
T ss_pred             CeEEEECC--CCCC---CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe----cCCEEEEEECCCCcEEEEE
Confidence            68999877  3332   4677888888874433333  3343448888999999433    2578999999998888877


Q ss_pred             cccccccCCceeec------------------Ccc--ee-eE----------------EeeCCeEEEEeecCCCCcccce
Q 012294          259 GQNEIYGTDIESAI------------------PAT--KL-RW----------------VSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       259 ~~~~~~~~~~w~~~------------------~~~--k~-~~----------------~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      ....   +.+|...                  ++-  +. .-                ...++.|||.-.      ..+.
T Consensus       103 ~~g~---~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~------~~~~  173 (266)
T 2iwa_A          103 THQM---KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW------QTDC  173 (266)
T ss_dssp             ECCS---SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET------TSSE
T ss_pred             ECCC---CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC------CCCe
Confidence            4320   1222211                  111  00 00                012677776654      2458


Q ss_pred             EEEEeCCCCeeeeEEcCC-------------cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          302 IKFWDIRSGNVAWEVKDE-------------VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       302 Ve~yDprt~~~vW~~~~~-------------~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |-+-||.+++++=...-+             .+..-+++.++++..+|+.|...+.||.+||....
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            999999999988444211             13345788999999999999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.14  E-value=0.024  Score=55.06  Aligned_cols=146  Identities=13%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCC-
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLK-  253 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~-  253 (466)
                      ++.++|.|+  .++     .+..||..+..|..+..+   ...+.+++... +.+.+ |+.     ..+|-.||..+.+ 
T Consensus        22 ~g~~l~~~~--~d~-----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           22 QRTEFVTTT--ATN-----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-----DRNAYVYEKRPDGT   89 (377)
T ss_dssp             SSSEEECCC--SSS-----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-----TSSEEEC------C
T ss_pred             CCCEEEEec--CCC-----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCCc
Confidence            467777777  554     456778888777776666   33444455553 34444 655     3568899998832 


Q ss_pred             --ccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe---eeeEEcC-Cccccccee
Q 012294          254 --PVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN---VAWEVKD-EVDCFSDVT  327 (466)
Q Consensus       254 --~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~---~vW~~~~-~~d~~~~~~  327 (466)
                        +...+..     ..    .....+.|.+ ++.++++|+.|+      +|.+||.++++   ++-.... +.+....+.
T Consensus        90 ~~~~~~~~~-----~~----~~v~~~~~~~-~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           90 WKQTLVLLR-----LN----RAATFVRWSP-NEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             CCCEEECCC-----CS----SCEEEEECCT-TSSCCEEEESSS------CEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             eeeeeEecc-----cC----CceEEEEECC-CCCEEEEEecCC------eEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence              2111111     01    1123344554 556667777444      79999999987   3566666 676778888


Q ss_pred             eecCCCceEEEEEeeCceeEeeccccC
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++++.. +..|+.+|.+.+-|++..+
T Consensus       154 ~~~~~~~-l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          154 WHPNNVL-LAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             ECTTSSE-EEEEESSSCEEEEEECCSS
T ss_pred             EcCCCCE-EEEEeCCCEEEEEEEEecc
Confidence            8887764 5578899999999997544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.13  E-value=0.059  Score=50.77  Aligned_cols=144  Identities=10%  Similarity=0.047  Sum_probs=82.5

Q ss_pred             ceeeeeCCCCceeecCCC-CC--ceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC
Q 012294          199 LENGYVKETLNWENVTRS-SS--TVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP  273 (466)
Q Consensus       199 svE~ydp~t~~W~~va~M-r~--~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~  273 (466)
                      .+..+|+.+.+-...-++ ..  ....+++. ++ .+|+....    ...|.+||+.+.+.+..+....    ..-....
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~   83 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK----SESLVKIDLVTGETLGRIDLST----PEERVKS   83 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT----TTEEEEEETTTCCEEEEEECCB----TTEEEEC
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC----CCeEEEEECCCCCeEeeEEcCC----ccccccc
Confidence            455666665543222122 10  12224554 34 68883321    3579999999855443332210    0000012


Q ss_pred             cceeeEEeeCCeEEEEeecC--CCCcc---cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294          274 ATKLRWVSSYNLLLASGSHS--DISKV---TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       274 ~~k~~~~~~~~~Lyv~Gg~~--g~~~~---~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~  348 (466)
                      +..+.|.+-++.||++....  ++..+   .+.|.+||+.++++++.... +.....+.+++++..||..   ++.|++.
T Consensus        84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~  159 (337)
T 1pby_B           84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVM  159 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEE
T ss_pred             ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEE
Confidence            33455555556888875211  11111   36899999999998887754 3344677899999998865   7999999


Q ss_pred             eccccC
Q 012294          349 DLRKLG  354 (466)
Q Consensus       349 dlr~~~  354 (466)
                      |+.+.+
T Consensus       160 d~~~~~  165 (337)
T 1pby_B          160 DPEAGT  165 (337)
T ss_dssp             ETTTTE
T ss_pred             ECCCCc
Confidence            987643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.12  E-value=0.032  Score=52.83  Aligned_cols=195  Identities=13%  Similarity=0.256  Sum_probs=107.0

Q ss_pred             eEEEEecCCCcCCCeeEEEecC--C--CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294          229 HLFVSFESGRRNSNSIMVYDIN--S--LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       229 ~IYaGg~~g~~~l~sVE~YDp~--t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                      .||++..+    ...|.+||..  +  ++.+..+..      ..    .+..+.|.+-+..||+++..      .+.|.+
T Consensus        51 ~l~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~s~dg~~l~~~~~~------~~~i~~  110 (343)
T 1ri6_A           51 YLYVGVRP----EFRVLAYRIAPDDGALTFAAESAL------PG----SLTHISTDHQGQFVFVGSYN------AGNVSV  110 (343)
T ss_dssp             EEEEEETT----TTEEEEEEECTTTCCEEEEEEEEC------SS----CCSEEEECTTSSEEEEEETT------TTEEEE
T ss_pred             EEEEeecC----CCeEEEEEecCCCCceeecccccc------CC----CCcEEEEcCCCCEEEEEecC------CCeEEE
Confidence            48885442    2578898887  3  111111111      11    24455666666678877652      347999


Q ss_pred             EeC---CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeE-
Q 012294          305 WDI---RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCK-  380 (466)
Q Consensus       305 yDp---rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~-  380 (466)
                      ||.   ++.+.+.....+ .....+.+++++..||..+..++.|.+.|++.-+   ....+... . ...  ..+..+. 
T Consensus       111 ~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~-~-~~~--~~~~~~~~  182 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG---HLVAQDPA-E-VTT--VEGAGPRH  182 (343)
T ss_dssp             EEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS---CEEEEEEE-E-EEC--STTCCEEE
T ss_pred             EECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC---ceeeeccc-c-ccc--CCCCCcce
Confidence            999   444444444333 2346678999999999766689999999997633   22222200 0 010  1111222 


Q ss_pred             EEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc--CCCCceEEEeee--cceeEEEeec
Q 012294          381 IECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD--MGGSKITNLSFG--GNKMFVTRKG  452 (466)
Q Consensus       381 ~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~i~~~~~g--g~r~f~~~~~  452 (466)
                      ++..  +..||++  .++.|.+|.--    ..   .+.+.  ....  +...+.  .....+..+++-  |.+||++-..
T Consensus       183 ~~~~pdg~~l~~~~~~~~~i~~~~~~----~~---~g~~~--~~~~--~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          183 MVFHPNEQYAYCVNELNSSVDVWELK----DP---HGNIE--CVQT--LDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESS----CT---TSCCE--EEEE--EECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEec----CC---CCcEE--EEee--ccccCccccccCCccceEECCCCCEEEEEecC
Confidence            3332  3458777  46779898752    11   01111  0000  111111  122356666666  7789999888


Q ss_pred             cceEEEeccC
Q 012294          453 QQTVEVWQSS  462 (466)
Q Consensus       453 ~~~~~vw~~~  462 (466)
                      ...|.||+..
T Consensus       252 ~~~i~v~d~~  261 (343)
T 1ri6_A          252 ASLITVFSVS  261 (343)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEEEc
Confidence            8889999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.15  Score=49.35  Aligned_cols=238  Identities=11%  Similarity=0.176  Sum_probs=123.4

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-----CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCC
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-----SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLK  253 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~  253 (466)
                      +.++|.|+  .++.     +..||..++.+.....+     ...+.+++.. ++.+.| |+.     ..+|-.||..+..
T Consensus        24 ~~~las~~--~D~~-----i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-----D~~v~iw~~~~~~   91 (330)
T 2hes_X           24 QGILATGS--TDRK-----IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-----DSTVSIWAKEESA   91 (330)
T ss_dssp             TTEEEEEE--SSSC-----EEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-----TSCEEEEEC----
T ss_pred             CCEEEEEc--CCCE-----EEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-----CCcEEEEEcccCc
Confidence            34777777  5543     44556555433222111     2233335554 345555 665     3568899986411


Q ss_pred             cc-ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC----eeeeEEcCCcccccceee
Q 012294          254 PV-NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG----NVAWEVKDEVDCFSDVTV  328 (466)
Q Consensus       254 ~~-~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~----~~vW~~~~~~d~~~~~~v  328 (466)
                      .. .+......+.+..   -+...+.|.+ ++.++++|+.|+      +|.+||.+..    +++-...+|.+....+..
T Consensus        92 ~~~~~~~~~~~~~~h~---~~V~~v~~sp-~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           92 DRTFEMDLLAIIEGHE---NEVKGVAWSN-DGYYLATCSRDK------SVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             ---CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             CccccceeEEEEcCCC---CcEEEEEECC-CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            00 0000000010110   0122344544 566777887544      7999999543    456677778777788888


Q ss_pred             ecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC---CE-EEE-EeCCeEEEeEeee
Q 012294          329 SDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA---NQ-VFC-GKGGEIELWSEIV  403 (466)
Q Consensus       329 ~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~---~~-lf~-~~~~~~~v~~~~~  403 (466)
                      ++++.. +..|+.+|.+.+-|++..    .|.++..    +.+  ..+.=..++...   +. |.. +.++.|.||.--.
T Consensus       162 ~p~~~~-l~s~s~D~~i~iW~~~~~----~~~~~~~----~~~--h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          162 HPSEAL-LASSSYDDTVRIWKDYDD----DWECVAV----LNG--HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CSSSSE-EEEEETTSCEEEEEEETT----EEEEEEE----ECC--CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCCCCE-EEEEcCCCeEEEEECCCC----CeeEEEE----ccC--CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            888765 457889999988887652    3444443    221  110111122222   23 333 3678899997532


Q ss_pred             ecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEecc
Q 012294          404 MGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       404 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~  461 (466)
                      .....      ..+.....    ..+....+.|..+++.-+.++++=.+...|.||+.
T Consensus       231 ~~~~~------~~~~~~~~----~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          231 DDEDD------QQEWVCEA----ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE  278 (330)
T ss_dssp             ECTTS------CEEEEEEE----ECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEE
T ss_pred             CCccc------cceeEEee----ecccccccceEEEEEcCCCEEEEEeCCCEEEEEEc
Confidence            11100      00000011    11112456799998876667777777788999975

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.11  E-value=0.013  Score=57.40  Aligned_cols=145  Identities=10%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             eEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          221 QAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       221 ~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      .++...++.||+ .|..+     .|-++|++|.+.+..+ -..    .      .-..+....++.||++...      .
T Consensus        58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~----~------~FgeGit~~g~~Ly~ltw~------~  115 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLG----N------IFAEGLASDGERLYQLTWT------E  115 (268)
T ss_dssp             EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECT----T------CCEEEEEECSSCEEEEESS------S
T ss_pred             ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCC----C------cceeEEEEeCCEEEEEEcc------C
Confidence            448888999999 55533     3899999996555554 211    0      1112344578999999763      4


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      +.+-.||+.|.+++-+..-+.   ...+++.++..||+--+ ++.|.+.|-.+.+-... +.+..+.+.+.      .=-
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~---eGwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~-I~V~~~g~~v~------~lN  184 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSG---EGWGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGA-VQVKLRGQPVE------LIN  184 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSS---CCCCEEEETTEEEEECS-SSEEEEECTTTCCEEEE-EECEETTEECC------CEE
T ss_pred             CEEEEEECCcCcEEEEEeCCC---ceeEEecCCCEEEEECC-CCEEEEEcCCCCeEEEE-EEeCCCCcccc------ccc
Confidence            579999999999998886554   45778889999997764 89999999877652100 22332111111      113


Q ss_pred             EEEEECCEEEEEe--CCeEEE
Q 012294          380 KIECHANQVFCGK--GGEIEL  398 (466)
Q Consensus       380 ~~~~~~~~lf~~~--~~~~~v  398 (466)
                      .|++.+|+||+.-  .+.|.|
T Consensus       185 eLe~~dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          185 ELECANGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EEEEETTEEEEEETTCSEEEE
T ss_pred             ccEEeCCEEEEEECCCCeEEE
Confidence            4788899999873  455543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.09  E-value=0.072  Score=50.54  Aligned_cols=109  Identities=9%  Similarity=0.058  Sum_probs=72.7

Q ss_pred             ECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294          226 SDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       226 l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                      .++.+|+ +..     .+.|.+||+.+.+.+..+.....        ..+..+.+.+-++.||+++..      .+.|.+
T Consensus         9 ~~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~--------~~~~~~~~s~dg~~~~v~~~~------~~~i~~   69 (349)
T 1jmx_B            9 AGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDK--------FGPGTAMMAPDNRTAYVLNNH------YGDIYG   69 (349)
T ss_dssp             TTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSC--------CSSCEEEECTTSSEEEEEETT------TTEEEE
T ss_pred             CCCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCCC--------CCCceeEECCCCCEEEEEeCC------CCcEEE
Confidence            3567888 543     46899999998444433322110        023445555555678888752      347999


Q ss_pred             EeCCCCeeeeEEcCCc------ccccceeeecCCCceEEEEEe-----------eCceeEeecccc
Q 012294          305 WDIRSGNVAWEVKDEV------DCFSDVTVSDNLSAIYKVGIN-----------SGEVSYMDLRKL  353 (466)
Q Consensus       305 yDprt~~~vW~~~~~~------d~~~~~~v~~~~~~i~~v~~~-----------~g~l~~~dlr~~  353 (466)
                      ||+.++++++...-+.      .....+.+++++..||.....           ++.|++.|+.+.
T Consensus        70 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           70 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence            9999999888775322      224677899999998866533           489999999873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.06  E-value=0.021  Score=55.74  Aligned_cols=148  Identities=10%  Similarity=-0.042  Sum_probs=94.2

Q ss_pred             EEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          222 AIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       222 Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      ++++.+ +.||+ .|..+   .++|-++|+.|.+.+..+.-..          .+-..+....++.||++.-      ..
T Consensus        25 Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~----------~~fgeGi~~~g~~lyv~t~------~~   85 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDD----------SYFGEGLTLLNEKLYQVVW------LK   85 (266)
T ss_dssp             EEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCT----------TCCEEEEEEETTEEEEEET------TC
T ss_pred             cEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCC----------CcceEEEEEeCCEEEEEEe------cC
Confidence            377776 79999 44322   4789999999966555443211          0111233345789999986      34


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      +.|..||+.|.+++.+..-.  .-...+++.++..+|+-. .++.|+++|..+.+-.. =+.+..+.+.+.      .=-
T Consensus        86 ~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~-~I~Vg~~~~p~~------~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIK-KHNVKYNGHRVI------RLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE-EEECEETTEECC------CEE
T ss_pred             CEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE-EEEECCCCcccc------cce
Confidence            57999999999999887433  114567888999999655 68999999998866200 022333111111      111


Q ss_pred             EEEEECCEEEEEe--CCeEEE
Q 012294          380 KIECHANQVFCGK--GGEIEL  398 (466)
Q Consensus       380 ~~~~~~~~lf~~~--~~~~~v  398 (466)
                      .+++.+|+||+.-  .+.|.|
T Consensus       156 ele~~dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          156 ELEYINGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEEETTEEEEEETTSSEEEE
T ss_pred             eEEEECCEEEEecCCCCeEEE
Confidence            4666799999985  345543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.06  E-value=0.05  Score=53.50  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             eeEEeeCCeEEEEeecCCCCcccce-EEEEeCCCCeeeeEEc-C-CcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGN-IKFWDIRSGNVAWEVK-D-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~s-Ve~yDprt~~~vW~~~-~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +.|.+ ++.++++|+.||      + |.+||.++++++-++. + |...+..++.++++..| ..|+.+|.+.+-|++..
T Consensus       201 ~~~s~-~g~~l~s~s~d~------~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l-~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          201 VRLNR-KSDMVATCSQDG------TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKL-AVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEECT-TSSEEEEEETTC------SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEE-EEEETTCEEEEEESSCC
T ss_pred             EEECC-CCCEEEEEeCCC------CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEE-EEEECCCEEEEEEccCC
Confidence            34444 777888888554      6 9999999999999887 4 77778888999988764 47889999999999875


Q ss_pred             CCCCCeEE
Q 012294          354 GDSSEWIC  361 (466)
Q Consensus       354 ~~~~~W~~  361 (466)
                      . .+++..
T Consensus       273 ~-~~~~~~  279 (355)
T 3vu4_A          273 Q-DNKRHA  279 (355)
T ss_dssp             S-CCCSEE
T ss_pred             C-Cccccc
Confidence            4 344443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.054  Score=53.89  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294          228 KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD  306 (466)
Q Consensus       228 ~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD  306 (466)
                      +.+.+ |+.     ...|-.||..+.+++..+....   ..    .....+.|.+ ++.++++|+.||      +|.+||
T Consensus       182 ~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~---h~----~~v~~~~~s~-~~~~l~s~~~dg------~i~iwd  242 (437)
T 3gre_A          182 KSLLVALTN-----LSRVIIFDIRTLERLQIIENSP---RH----GAVSSICIDE-ECCVLILGTTRG------IIDIWD  242 (437)
T ss_dssp             CEEEEEEET-----TSEEEEEETTTCCEEEEEECCG---GG----CCEEEEEECT-TSCEEEEEETTS------CEEEEE
T ss_pred             CCEEEEEeC-----CCeEEEEeCCCCeeeEEEccCC---CC----CceEEEEECC-CCCEEEEEcCCC------eEEEEE
Confidence            44444 655     3578999999955444443200   00    1223344443 567777787544      799999


Q ss_pred             CCCCeeeeEEc-CCcccccceeeecC---CCceEEEEEeeCceeEeeccccC
Q 012294          307 IRSGNVAWEVK-DEVDCFSDVTVSDN---LSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       307 prt~~~vW~~~-~~~d~~~~~~v~~~---~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++++++-++. ++...+..+...+.   .+.++..|..+|.|.+-|+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          243 IRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             TTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             cCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            99999988775 45445555544432   23455577799999999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.04  Score=55.73  Aligned_cols=156  Identities=14%  Similarity=0.196  Sum_probs=91.8

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCC--CCeeeeEEc--CCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR--SGNVAWEVK--DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr--t~~~vW~~~--~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      .+.|.+-+..|+++|+.|      ++|.+||.+  +++++-.+.  .+......+..++++..|+ +|..+|.++..|++
T Consensus       107 ~~~~s~d~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI-IADKFGDVYSIDIN  179 (450)
T ss_dssp             EEEECTTSSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCC------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE-EEeCCCcEEEEecC
Confidence            345666666778888854      479999999  787776654  3345567788888887765 67789999999998


Q ss_pred             ccCCCCCeEEeccCCccccccccccceeEEEEEC---CEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccC
Q 012294          352 KLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA---NQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMG  426 (466)
Q Consensus       352 ~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~---~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~  426 (466)
                      ......  .++..    +.. ....-.+..-.-+   ++++++  .++.|.||.-.    ..     ..-    +.-+.+
T Consensus       180 ~~~~~~--~~~~~----~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~----~~-----~~~----~~~~~~  239 (450)
T 2vdu_B          180 SIPEEK--FTQEP----ILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP----QC-----FIV----DKWLFG  239 (450)
T ss_dssp             SCCCSS--CCCCC----SEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES----CT-----TCE----EEECCC
T ss_pred             Cccccc--cccee----eec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC----CC-----cee----eeeecC
Confidence            755210  00001    111 0111112222223   544433  67899999842    11     111    110112


Q ss_pred             ccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294          427 RVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       427 ~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                           ..+.|..++|-.++++++=.+...|-||+...
T Consensus       240 -----h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          240 -----HKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             -----CSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred             -----CCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence                 34678888885334455556667899998543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.03  E-value=0.27  Score=47.59  Aligned_cols=244  Identities=14%  Similarity=0.148  Sum_probs=125.4

Q ss_pred             eeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCe-EEEEecCCCcCCCeeEE
Q 012294          171 TAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKH-LFVSFESGRRNSNSIMV  246 (466)
Q Consensus       171 ~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~-IYaGg~~g~~~l~sVE~  246 (466)
                      ..+.++++. ++.+.+.|+  .++     ++..||..+.+-...-.- ...+.+++.. ++. |++|+.     ..+|-.
T Consensus        77 ~~V~~~~~~~~~~~l~s~s--~D~-----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----d~~i~~  144 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSS--WDK-----TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----EREIKL  144 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEE--TTS-----EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----TSCEEE
T ss_pred             CceEEEEECCCCCEEEEEc--CCC-----cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----CCEEEE
Confidence            344444444 355667777  554     455667666542211011 2333335554 334 444655     356888


Q ss_pred             EecCCCCccccccccccccCCceeecCcceeeEEee---------CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS---------YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~---------~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      ||.......... ...  +...|    ...+.|.+.         .+.++++|+.|      ++|.+|| .+.+...++.
T Consensus       145 wd~~~~~~~~~~-~~~--~~~~~----v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd-~~~~~~~~~~  210 (343)
T 2xzm_R          145 WNILGECKFSSA-EKE--NHSDW----VSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWN-TNFQIRYTFK  210 (343)
T ss_dssp             EESSSCEEEECC-TTT--SCSSC----EEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEE-TTTEEEEEEE
T ss_pred             EeccCCceeeee-ccc--CCCce----eeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEc-CCCceeEEEc
Confidence            998641111000 000  00111    112222221         12567777754      4899999 5567777888


Q ss_pred             CCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeCCe
Q 012294          318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKGGE  395 (466)
Q Consensus       318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~~~  395 (466)
                      .|......++.++++..| ..|+.+|.|.+-|++..+.  +-..+....          .-..++..  +..|.++.++.
T Consensus       211 ~h~~~v~~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~--~~~~~~~~~----------~v~~v~~sp~~~~la~~~d~~  277 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTY--PQREFDAGS----------TINQIAFNPKLQWVAVGTDQG  277 (343)
T ss_dssp             CCSSCEEEEEECTTSSEE-EEEETTCEEEEEESSCCSS--CSEEEECSS----------CEEEEEECSSSCEEEEEESSC
T ss_pred             CccccceEEEECCCCCEE-EEEcCCCeEEEEECCCCcc--cceeecCCC----------cEEEEEECCCCCEEEEECCCC
Confidence            887777888899988764 4788999999999976542  111111100          11112221  23455667889


Q ss_pred             EEEeEeeeecCCCCCCCCCcccceeeccccCcc--ccCCCCceEEEeee--cceeEEEeeccceEEEeccC
Q 012294          396 IELWSEIVMGSRKSREGGPLEERVFRKNLMGRV--TDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       396 ~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~  462 (466)
                      |.+|.-.    ..    ..+....+....+.+.  .....+.|..+++.  |..|+.. .+...|-||+..
T Consensus       278 v~iw~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~Dg~v~~w~~~  339 (343)
T 2xzm_R          278 VKIFNLM----TQ----SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG-FTDGVIRTFSFE  339 (343)
T ss_dssp             EEEEESS----SC----CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE-ETTSEEEEEEEE
T ss_pred             EEEEEeC----CC----CCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe-cCCceEEEEEEE
Confidence            9999743    11    0000000010000000  01234568888886  6666655 455678999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.00  E-value=0.033  Score=54.78  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      +.+++.|+  .+|     ++-.||..+.+....-.- ...+.+++.. ++.+++ |+.     ..+|-.||..+.+.+..
T Consensus       210 g~~l~sgs--~Dg-----~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          210 GNTFVSGG--CDK-----KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-----DATCRLYDLRADREVAI  277 (354)
T ss_dssp             CCEEEEEE--TTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEE
T ss_pred             CCEEEEEe--CCC-----eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEE
Confidence            57888888  665     355667666553322111 2334445554 345555 665     35688999987433322


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~  337 (466)
                      +....    .   ......+.+. .++.++++|+.|      ++|.+||.++++.+-...+|.+....+++++++..| .
T Consensus       278 ~~~~~----~---~~~~~~~~~s-~~g~~l~~g~~d------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l-~  342 (354)
T 2pbi_B          278 YSKES----I---IFGASSVDFS-LSGRLLFAGYND------YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF-C  342 (354)
T ss_dssp             ECCTT----C---CSCEEEEEEC-TTSSEEEEEETT------SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE-E
T ss_pred             EcCCC----c---ccceeEEEEe-CCCCEEEEEECC------CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE-E
Confidence            22111    0   0112233343 356677777744      479999999999998888888888899999988764 4


Q ss_pred             EEEeeCceeE
Q 012294          338 VGINSGEVSY  347 (466)
Q Consensus       338 v~~~~g~l~~  347 (466)
                      .|+.+|.|.+
T Consensus       343 sgs~D~~v~v  352 (354)
T 2pbi_B          343 SGSWDHTLRV  352 (354)
T ss_dssp             EEETTSEEEE
T ss_pred             EEcCCCCEEe
Confidence            7778888654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.032  Score=54.15  Aligned_cols=106  Identities=19%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEE
Q 012294          227 DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW  305 (466)
Q Consensus       227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~y  305 (466)
                      ++.+++ |+.     ..+|-.||..+.+.+.....      .  .......+.|.+ ++.++++|+.||      +|.+|
T Consensus       138 ~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~------~--~~~~i~~~~~~p-dg~~lasg~~dg------~i~iw  197 (343)
T 3lrv_A          138 NTEYFIWADN-----RGTIGFQSYEDDSQYIVHSA------K--SDVEYSSGVLHK-DSLLLALYSPDG------ILDVY  197 (343)
T ss_dssp             -CCEEEEEET-----TCCEEEEESSSSCEEEEECC------C--SSCCCCEEEECT-TSCEEEEECTTS------CEEEE
T ss_pred             CCCEEEEEeC-----CCcEEEEECCCCcEEEEEec------C--CCCceEEEEECC-CCCEEEEEcCCC------EEEEE
Confidence            345566 665     35789999998443221110      0  001133445554 778888888544      79999


Q ss_pred             eCCCCeee-eEEcC-CcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          306 DIRSGNVA-WEVKD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       306 Dprt~~~v-W~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |.++++.+ -++.. |......+..++++..|. .++ ++.|.+-|||+..
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~-s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV-VEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE-EEE-SSBEEEEETTSST
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE-EEe-CCeEEEEEcCCCC
Confidence            99999877 66666 777788889999887755 344 7799999999865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.98  E-value=0.0088  Score=58.53  Aligned_cols=184  Identities=9%  Similarity=-0.045  Sum_probs=111.9

Q ss_pred             ccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          178 ALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      +-++.||+..|  ..|.     +..+|+++.+=.... +  +....+++..+++||+.-.    ..+.+-+||+.|++.+
T Consensus        62 ~~~~~Ly~stG--~~g~-----v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw----~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           62 FHQGHFFESTG--HQGT-----LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTW----TEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EETTEEEEEET--TTTE-----EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEES----SSCEEEEEETTTTEEE
T ss_pred             EECCEEEEEcC--CCCE-----EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEc----cCCEEEEEECCcCcEE
Confidence            35788999999  6554     677788877533222 3  3333348888999999322    2578999999998888


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc--cccce-eeecCC
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD--CFSDV-TVSDNL  332 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d--~~~~~-~v~~~~  332 (466)
                      .++.-    ++.+|...        .-++.||++-|       .+.|..+||.|.+++-+..-..+  .+.-+ .+.-.+
T Consensus       130 ~ti~~----~~eGwGLt--------~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d  190 (268)
T 3nok_A          130 RTTRY----SGEGWGLC--------YWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN  190 (268)
T ss_dssp             EEEEC----SSCCCCEE--------EETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred             EEEeC----CCceeEEe--------cCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC
Confidence            77765    33555542        24678999865       34799999999987755421111  11110 112224


Q ss_pred             CceEEEEEeeCceeEeeccccCCCCCeEEeccCCcc-cccccccc-ceeEEEEE--CCEEEEEeC
Q 012294          333 SAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKM-VNGKRKEG-FGCKIECH--ANQVFCGKG  393 (466)
Q Consensus       333 ~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~-m~~~~~~~-~~~~~~~~--~~~lf~~~~  393 (466)
                      +.||+-+-.+++|.++|.++.+ --.|+.++.-.+. .+.+...+ .=-.||..  .++||++-.
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            5799544479999999999866 2345666531110 00000111 22346655  578888754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.97  E-value=0.034  Score=54.06  Aligned_cols=146  Identities=18%  Similarity=0.282  Sum_probs=88.8

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC--------
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG--------  354 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~--------  354 (466)
                      ++.+.++|+.|      ++|.+||.++++++.++.+|.+....++.++++..|+ .|+.+|.+.+-|++.-.        
T Consensus        87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             STTEEEEEETT------SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE-EEETTSCEEEEESSSCEEEECCTTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE-EEcCCCEEEEEeccCCceeeeeccc
Confidence            56667777744      4899999999999999999988888899999988765 78899999999986311        


Q ss_pred             CCCCeEEeccCCccccccccccceeEEEEECCEEE-EEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCC
Q 012294          355 DSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVF-CGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGG  433 (466)
Q Consensus       355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  433 (466)
                      ....|+..-.-.+...      ....+.-++..+. ++.++.|.+|..     ..     . .    +..+-+     ..
T Consensus       160 ~~~~~v~~~~~~~~~~------~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~-----~-~----~~~~~~-----h~  213 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMK------SANKVQPFAPYFASVGWDGRLKVWNT-----NF-----Q-I----RYTFKA-----HE  213 (343)
T ss_dssp             SCSSCEEEEEECCCCC------SCSCCCSSCCEEEEEETTSEEEEEET-----TT-----E-E----EEEEEC-----CS
T ss_pred             CCCceeeeeeeccccc------cccccCCCCCEEEEEcCCCEEEEEcC-----CC-----c-e----eEEEcC-----cc
Confidence            0111221111000000      0000000112233 236889999982     11     0 1    111112     34


Q ss_pred             CceEEEeeecc-eeEEEeeccceEEEecc
Q 012294          434 SKITNLSFGGN-KMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       434 ~~i~~~~~gg~-r~f~~~~~~~~~~vw~~  461 (466)
                      +.|..++|--| +++++=.....|-||+.
T Consensus       214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          214 SNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            57998888533 45666666778999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.90  E-value=0.052  Score=56.00  Aligned_cols=139  Identities=14%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      +++.++.|+  .++.     +..||.....-.....-...+.+++.. ++.+.+ ++.     ..+|..||... +.+..
T Consensus       396 dg~~l~~~~--~d~~-----v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----d~~v~~w~~~~-~~~~~  462 (577)
T 2ymu_A          396 DGQTIASAS--DDKT-----VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD-----DKTVKLWNRNG-QLLQT  462 (577)
T ss_dssp             TSSCEEEEE--TTSE-----EEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTS-CEEEE
T ss_pred             CCCEEEEEe--CCCE-----EEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcC-----CCEEEEEECCC-CEEEE
Confidence            466777777  5542     344553222111111112333335555 345555 654     35788999654 11111


Q ss_pred             c-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceE
Q 012294          258 I-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       258 ~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      + ++..          ....+.+. -++.++++|+.|      ++|.+|| .+++++.++..|.+....+++++++..|.
T Consensus       463 ~~~~~~----------~v~~~~~s-pd~~~las~~~d------~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          463 LTGHSS----------SVRGVAFS-PDGQTIASASDD------KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA  524 (577)
T ss_dssp             EECCSS----------CEEEEEEC-TTSCEEEEEETT------SEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             EcCCCC----------CEEEEEEc-CCCCEEEEEeCC------CEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence            1 1100          11233343 367777888744      4799999 57888999999988888899999988765


Q ss_pred             EEEEeeCceeEeec
Q 012294          337 KVGINSGEVSYMDL  350 (466)
Q Consensus       337 ~v~~~~g~l~~~dl  350 (466)
                       .++.+|.|.+-|+
T Consensus       525 -s~~~dg~v~lwd~  537 (577)
T 2ymu_A          525 -SASDDKTVKLWNR  537 (577)
T ss_dssp             -EEETTSEEEEECT
T ss_pred             -EEECcCEEEEEeC
Confidence             6778999988884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.87  E-value=0.00087  Score=67.45  Aligned_cols=171  Identities=15%  Similarity=0.155  Sum_probs=80.8

Q ss_pred             ecCCcEEEEcC-CceeeEe-------cCCCCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCC--Cc
Q 012294          140 TNYGTLHVSHG-SKITSFD-------WSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKET--LN  209 (466)
Q Consensus       140 ~~~g~lyva~G-G~ve~YD-------W~~a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t--~~  209 (466)
                      +.++.||+... |.+..+|       |.... .....  ..+    ..++.+|++++  .+|.     +-++|+.+  ..
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s--~p~----~~~g~~~v~~s--~dg~-----l~a~d~~tG~~~   72 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQ--VPT----HVEEPAFLPDP--NDGS-----LYTLGSKNNEGL   72 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCC--CC---------CCEEECT--TTCC-----EEEC-----CCS
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCcee--cce----EcCCCEEEEeC--CCCE-----EEEEECCCCcee
Confidence            34677775433 5566777       87721 11111  111    25667888876  5442     44556643  34


Q ss_pred             eeecCCC----CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCe
Q 012294          210 WENVTRS----SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNL  285 (466)
Q Consensus       210 W~~va~M----r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~  285 (466)
                      |..-...    ..+.  +...++.||+|..     ...+-+||+.|       |+.      .|+.-........+.++.
T Consensus        73 w~~~~~~~~~~~~sp--~~~~~~~v~~g~~-----dg~v~a~D~~t-------G~~------~w~~~~~~~~~~~p~~~~  132 (369)
T 2hz6_A           73 TKLPFTIPELVQASP--CRSSDGILYMGKK-----QDIWYVIDLLT-------GEK------QQTLSSAFADSLSPSTSL  132 (369)
T ss_dssp             EECSCCHHHHHTTCS--CC-----CCCCEE-----EEEEEEECCC-----------------------------------
T ss_pred             eeeeccCccccccCc--eEecCCEEEEEeC-----CCEEEEEECCC-------CcE------EEEecCCCcccccccCCE
Confidence            5432221    1111  1124778888443     34689999999       442      254322211222235677


Q ss_pred             EEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCC---CceEEEEEeeCceeEeeccccC
Q 012294          286 LLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNL---SAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       286 Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~---~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ||+.+.       .+.|..||+++++++|+.....  .....++.+.   ..|| ++..+|.|+..|+++-+
T Consensus       133 v~~~~~-------dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~-~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          133 LYLGRT-------EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHF-VSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EEEEEE-------EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEE-EEETSCEEEEECTTTCC
T ss_pred             EEEEec-------CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEE-EECCCCEEEEEECCCCc
Confidence            776543       4579999999999999985321  2333444432   5666 57789999999998733

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.84  E-value=0.22  Score=51.24  Aligned_cols=216  Identities=14%  Similarity=0.260  Sum_probs=114.3

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      ++...+.|+  .+|.     +..||.....-.....-...+.+++... +...+ |+.     ...|..||... +.+..
T Consensus       355 ~g~~l~~~~--~dg~-----v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~~~-~~~~~  421 (577)
T 2ymu_A          355 DGQTIASAS--DDKT-----VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNRNG-QLLQT  421 (577)
T ss_dssp             TSSEEEEEE--TTSE-----EEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECTTC-CEEEE
T ss_pred             CCCEEEEEe--CCCE-----EEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCC-CEEEE
Confidence            567778877  5553     3445543222111111123333455543 44444 655     35788898543 22211


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~  337 (466)
                      +..      ..   .+...+.+. -++.++++++.|      ++|.+||. +++.+....++...+..+++++++..| .
T Consensus       422 ~~~------~~---~~v~~~~~s-~d~~~l~~~~~d------~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~l-a  483 (577)
T 2ymu_A          422 LTG------HS---SSVWGVAFS-PDDQTIASASDD------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI-A  483 (577)
T ss_dssp             EEC------CS---SCEEEEEEC-TTSSEEEEEETT------SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEE-E
T ss_pred             ecC------CC---CCeEEEEEC-CCCCEEEEEcCC------CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEE-E
Confidence            111      00   011223343 356667777744      47999995 667788888888788888999988764 4


Q ss_pred             EEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE-ECCE-EEEE-eCCeEEEeEeeeecCCCCCCCCC
Q 012294          338 VGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQ-VFCG-KGGEIELWSEIVMGSRKSREGGP  414 (466)
Q Consensus       338 v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~-lf~~-~~~~~~v~~~~~~~~~~~~~~~~  414 (466)
                      .+..++.+.+-|+.  + .    ++..    +.. ... .=..|+. -+|+ |+++ .++.|.||...     .    . 
T Consensus       484 s~~~d~~i~iw~~~--~-~----~~~~----~~~-h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-----~----~-  540 (577)
T 2ymu_A          484 SASDDKTVKLWNRN--G-Q----LLQT----LTG-HSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-----G----Q-  540 (577)
T ss_dssp             EEETTSEEEEEETT--S-C----EEEE----EEC-CSS-CEEEEEECTTSSCEEEEETTSEEEEECTT-----S----C-
T ss_pred             EEeCCCEEEEEcCC--C-C----EEEE----EeC-CCC-CEEEEEEcCCCCEEEEEECcCEEEEEeCC-----C----C-
Confidence            67788998887742  1 1    1111    111 001 1011222 2344 4433 66789999731     1    1 


Q ss_pred             cccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEec
Q 012294          415 LEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       415 ~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~  460 (466)
                          ..+ .+.+     ..+.|+.++|-  |..| +|=..-..|-||.
T Consensus       541 ----~~~-~~~~-----h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 ----LLQ-TLTG-----HSSSVWGVAFSPDGQTI-ASASSDKTVKLWN  577 (577)
T ss_dssp             ----EEE-EEEC-----CSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ----EEE-EEcC-----CCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence                111 1223     35679999886  4445 4444446689995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.80  E-value=0.12  Score=49.62  Aligned_cols=231  Identities=11%  Similarity=0.187  Sum_probs=120.2

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC---CeEEE-EecCCCcCCCeeEEEecCCC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD---KHLFV-SFESGRRNSNSIMVYDINSL  252 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~~l~sVE~YDp~t~  252 (466)
                      ++++.|.|+  .++     ++..||..+.....+..+   ...+-+++...   +.+.+ |+.     ..+|-.||..+-
T Consensus        24 ~g~~lasgs--~D~-----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-----D~~v~iWd~~~~   91 (316)
T 3bg1_A           24 YGTRLATCS--SDR-----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-----DRKVIIWREENG   91 (316)
T ss_dssp             GGCEEEEEE--TTT-----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-----TSCEEEECCSSS
T ss_pred             CCCEEEEEe--CCC-----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-----CCEEEEEECCCC
Confidence            567788888  665     345556554433222222   23344455542   44555 655     357889999872


Q ss_pred             --CccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE----cCCcccccc
Q 012294          253 --KPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV----KDEVDCFSD  325 (466)
Q Consensus       253 --~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~----~~~~d~~~~  325 (466)
                        +.+..+.      +..   .+...+.|.+- .+.++++|+.||      +|.+||.+++. .|+.    ..|......
T Consensus        92 ~~~~~~~~~------~h~---~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~-~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           92 TWEKSHEHA------GHD---SSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEG-QWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CCCEEEEEC------CCS---SCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSS-CEEECCBTTSSSSCBCC
T ss_pred             cceEEEEcc------CCC---CceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCC-CcceeeeeccccCCcce
Confidence              1111111      010   12334556654 367888888554      79999998763 1432    233333333


Q ss_pred             eeeecCC----------------CceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-C---
Q 012294          326 VTVSDNL----------------SAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-A---  385 (466)
Q Consensus       326 ~~v~~~~----------------~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~---  385 (466)
                      +..+++.                ..++..|+.+|.+.+-|++.   ...|.++..    +..  ....=..++.. .   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~---~~~~~~~~~----l~~--h~~~V~~v~~sp~~~~  226 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE---DGQWKEEQK----LEA--HSDWVRDVAWAPSIGL  226 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT---TSCEEEEEC----CBC--CSSCEEEEECCCCSSC
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC---CCccceeee----ccc--CCCceEEEEecCCCCC
Confidence            4444432                34677788999988888864   234555543    221  11011112222 1   


Q ss_pred             -CEEEE--EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEecc
Q 012294          386 -NQVFC--GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       386 -~~lf~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~  461 (466)
                       +++++  +.++.|.+|.--.... .     ....+++..         ..+.|..++|-- .+++++-.+...|-||+.
T Consensus       227 ~~~~las~s~D~~v~iw~~~~~~~-~-----~~~~~~~~~---------~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          227 PTSTIASCSQDGRVFIWTCDDASS-N-----TWSPKLLHK---------FNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SCCEEEEEETTCEEEEEECSSTTC-C-----CCBCCEEEE---------CSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEEccCccc-c-----chhhhhhhc---------CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence             24444  3678899997420000 0     001112111         245788888853 245555566677999986


Q ss_pred             C
Q 012294          462 S  462 (466)
Q Consensus       462 ~  462 (466)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.78  E-value=0.019  Score=54.77  Aligned_cols=144  Identities=10%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC  361 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~  361 (466)
                      ..+.+|++...      .+.|.+||+.+++++.....+.... .+++++++..||..+..++.|++.|+.+...  .-..
T Consensus         8 ~~~~~~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~   78 (331)
T 3u4y_A            8 TSNFGIVVEQH------LRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVA   78 (331)
T ss_dssp             CCCEEEEEEGG------GTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEE
T ss_pred             CCCEEEEEecC------CCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEe
Confidence            46788998873      3489999999999888776555444 8889999999998887889999999976431  0111


Q ss_pred             eccCCccccccccccce-eEEEEECCEEEEEeCC----eEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCce
Q 012294          362 LGDGRKMVNGKRKEGFG-CKIECHANQVFCGKGG----EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKI  436 (466)
Q Consensus       362 ~~~~~~~m~~~~~~~~~-~~~~~~~~~lf~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i  436 (466)
                      +...    .  .+  .. ..+.--+.+||++.++    .|.||.--     .        .++.+.  +     ..+...
T Consensus        79 ~~~~----~--~~--~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-----~--------~~~~~~--~-----~~~~~~  130 (331)
T 3u4y_A           79 IQEG----Q--SS--MADVDITPDDQFAVTVTGLNHPFNMQSYSFL-----K--------NKFIST--I-----PIPYDA  130 (331)
T ss_dssp             EEEC----S--SC--CCCEEECTTSSEEEECCCSSSSCEEEEEETT-----T--------TEEEEE--E-----ECCTTE
T ss_pred             cccC----C--CC--ccceEECCCCCEEEEecCCCCcccEEEEECC-----C--------CCeEEE--E-----ECCCCc
Confidence            1110    0  01  22 3333345678877766    79999642     1        111111  0     123345


Q ss_pred             EEEeee--cceeEEEeeccce-EEEeccC
Q 012294          437 TNLSFG--GNKMFVTRKGQQT-VEVWQSS  462 (466)
Q Consensus       437 ~~~~~g--g~r~f~~~~~~~~-~~vw~~~  462 (466)
                      ..+++-  |.+||++-.+.+. +.||+-.
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            666664  5589999777666 8888754

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=96.73  E-value=0.00027  Score=63.93  Aligned_cols=83  Identities=11%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CeEEEEE-CCeEEEEeHHHhhccCCCCccccccCC----Cce-eEcCCchhHHHHhcccccCccc---------------
Q 012294           23 NIVTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS----THR-FIDRDPELFSILLSLLRTGNLP---------------   81 (466)
Q Consensus        23 ~~V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~----~~~-fiDRDp~~F~~IL~ylrtG~l~---------------   81 (466)
                      ..|+|.- .|+.|.+++.+...   +.+|+.|+.+    +++ +.+.++.+++.|++|+++.+-.               
T Consensus         4 ~~v~L~SsDg~~f~v~~~vA~~---S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~   80 (160)
T 2p1m_A            4 KKIVLKSSDGESFEVEEAVALE---SQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD   80 (160)
T ss_dssp             ----CCC---------CHHHHT---CTTTC------------CCTTSCHHHHHHHHHC----------------------
T ss_pred             CEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccccccc
Confidence            4678875 69999999998443   5699999986    234 6699999999999999987621               


Q ss_pred             ----------cCCCCcChHHHHHhhccccchhhHHhh
Q 012294           82 ----------SKAKAFDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        82 ----------~~~~~~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                                +.-+...+.+|+.+|+|++|..|++.|
T Consensus        81 ~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~  117 (160)
T 2p1m_A           81 DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLT  117 (160)
T ss_dssp             --------------------CHHHHHHTTCHHHHHHH
T ss_pred             chhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence                      000123567899999999999999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.67  E-value=0.25  Score=45.39  Aligned_cols=182  Identities=8%  Similarity=-0.010  Sum_probs=98.0

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      ++.+|+...  .      ..+-.||+....-...... -....++++. ++.||++...    .+.|.+||+.+......
T Consensus        77 ~g~l~v~~~--~------~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           77 AGTVYVTDF--N------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG----NNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             TCCEEEEET--T------TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG----GTEEEEECTTCCSCEEC
T ss_pred             CCCEEEEcC--C------CEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC----CCEEEEEECCCceeEee
Confidence            567887754  1      2355677776654333211 1233345655 6789993221    35788998877221110


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~  337 (466)
                      ..       ..  ...+..+.+. -+|.||++...      .+.|.+||+.++..............++++++++ .||.
T Consensus       145 ~~-------~~--~~~p~~i~~~-~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v  207 (270)
T 1rwi_B          145 PF-------TG--LNDPDGVAVD-NSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYV  207 (270)
T ss_dssp             CC-------CS--CCSCCCEEEC-TTCCEEEEEGG------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEE
T ss_pred             cc-------cc--CCCceeEEEe-CCCCEEEEECC------CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEE
Confidence            00       00  0012223332 35679988752      3479999999887543322222333556777776 7886


Q ss_pred             EEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE-ECCEEEEEe--CCeEEEeEee
Q 012294          338 VGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCGK--GGEIELWSEI  402 (466)
Q Consensus       338 v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~~--~~~~~v~~~~  402 (466)
                      ....++.|+..|+....   ... ...  ..+.      .-..|+. -+|+||++-  ++.|.++...
T Consensus       208 ~~~~~~~v~~~~~~~~~---~~~-~~~--~~~~------~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          208 TEHNTNQVVKLLAGSTT---STV-LPF--TGLN------TPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EETTTSCEEEECTTCSC---CEE-CCC--CSCS------CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EECCCCcEEEEcCCCCc---cee-ecc--CCCC------CceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            66667888888765422   111 111  0011      1223444 357899984  6778888776

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.67  E-value=0.28  Score=52.64  Aligned_cols=192  Identities=15%  Similarity=0.152  Sum_probs=105.9

Q ss_pred             eeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCe-EEEEecCCCcCCCeeEEE
Q 012294          172 AVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKH-LFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       172 ~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~-IYaGg~~g~~~l~sVE~Y  247 (466)
                      .+.++++. ++.+.+.|+  .+|     ++..+|..+.+-...-.- ...+.+++.. ++. |..|+.     ..+|-.|
T Consensus       432 ~v~~v~~s~~g~~l~sgs--~Dg-----~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----D~~i~iw  499 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGS--WDG-----ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-----DRTIKLW  499 (694)
T ss_dssp             CEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEE
T ss_pred             cEEEEEECCCCCEEEEEe--CCC-----cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-----CCEEEEE
Confidence            34444443 467778887  665     345566554431111000 2233334544 333 444655     3578889


Q ss_pred             ecCCCCccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccce
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDV  326 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~  326 (466)
                      |....... .+.... .++..|    ...+.|.+.. ..++++|+.|+      +|.+||.++++++-+..+|...+..+
T Consensus       500 d~~~~~~~-~~~~~~-~~h~~~----v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~h~~~v~~v  567 (694)
T 3dm0_A          500 NTLGECKY-TISEGG-EGHRDW----VSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLAGHTGYVSTV  567 (694)
T ss_dssp             CTTSCEEE-EECSST-TSCSSC----EEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ECCCCcce-eeccCC-CCCCCc----EEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            87551100 000000 000111    1223444322 24667777544      79999999999999999898788888


Q ss_pred             eeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE--ECCEEEEEeCCeEEEeEe
Q 012294          327 TVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC--HANQVFCGKGGEIELWSE  401 (466)
Q Consensus       327 ~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~~lf~~~~~~~~v~~~  401 (466)
                      .+++++.. +..|+.+|.|.+-|+++...      +..    +..  .. .-..++.  -+..|.++.++.|.||.-
T Consensus       568 ~~spdg~~-l~sg~~Dg~i~iwd~~~~~~------~~~----~~~--~~-~v~~~~~sp~~~~l~~~~~~~i~iwd~  630 (694)
T 3dm0_A          568 AVSPDGSL-CASGGKDGVVLLWDLAEGKK------LYS----LEA--NS-VIHALCFSPNRYWLCAATEHGIKIWDL  630 (694)
T ss_dssp             EECTTSSE-EEEEETTSBCEEEETTTTEE------EEC----CBC--SS-CEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred             EEeCCCCE-EEEEeCCCeEEEEECCCCce------EEE----ecC--CC-cEEEEEEcCCCcEEEEEcCCCEEEEEC
Confidence            99998765 44788999999999987431      222    111  00 1111222  234566668888999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.65  E-value=0.14  Score=48.58  Aligned_cols=157  Identities=9%  Similarity=-0.029  Sum_probs=85.1

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-C-CceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-S-STVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKP  254 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r-~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~  254 (466)
                      -++.+|+.++  .++     .+..+|+.+.+....-+. . ....++++. ++ .+|+...    ....|.+||+.+.+.
T Consensus         9 ~~~~~~v~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            9 AGHEYMIVTN--YPN-----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKN   77 (349)
T ss_dssp             TTCEEEEEEE--TTT-----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----TTTEEEEEETTTTEE
T ss_pred             CCCEEEEEeC--CCC-----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC----CCCcEEEEeCCCCcE
Confidence            4667888877  443     466778877654322222 1 122235555 33 5888332    146799999998443


Q ss_pred             cccccccccccCCceeecCcceeeEEeeCCeEEEEeec----CCCC-cccceEEEEeCCCCee---eeEEcCCcccccce
Q 012294          255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSH----SDIS-KVTGNIKFWDIRSGNV---AWEVKDEVDCFSDV  326 (466)
Q Consensus       255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~----~g~~-~~~~sVe~yDprt~~~---vW~~~~~~d~~~~~  326 (466)
                      +..+....   ...-....+..+.+.+-+..||+++..    .... ...+.|.+||..+++.   +.....+. ....+
T Consensus        78 ~~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~  153 (349)
T 1jmx_B           78 TFHANLSS---VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLM  153 (349)
T ss_dssp             EEEEESCC---STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCE
T ss_pred             EEEEEccc---ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-cccce
Confidence            33322100   000000113344555555577776631    0000 0125899999998543   33443333 34667


Q ss_pred             eeecCCCceEEEEEeeCceeEeeccccC
Q 012294          327 TVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       327 ~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++++. ||..   +++|++.|+.+.+
T Consensus       154 ~~s~dg~-l~~~---~~~i~~~d~~~~~  177 (349)
T 1jmx_B          154 RAADDGS-LYVA---GPDIYKMDVKTGK  177 (349)
T ss_dssp             EECTTSC-EEEE---SSSEEEECTTTCC
T ss_pred             eECCCCc-EEEc---cCcEEEEeCCCCc
Confidence            7899998 8862   5669999987644

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=96.62  E-value=0.00072  Score=55.92  Aligned_cols=71  Identities=17%  Similarity=0.261  Sum_probs=55.5

Q ss_pred             EEEEE-CCeEEEEeHHHhhccCCCCccccccCC--------C-ce-eEcCCchhHHHHhcccc-----c---Cccc---c
Q 012294           25 VTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS--------T-HR-FIDRDPELFSILLSLLR-----T---GNLP---S   82 (466)
Q Consensus        25 V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~--------~-~~-fiDRDp~~F~~IL~ylr-----t---G~l~---~   82 (466)
                      |+|.- +|+.|.++|.+ ++  .+.+|++||++        + ++ +.+.++.+++.|++|++     +   +.++   +
T Consensus         4 v~L~SsDg~~F~v~r~v-A~--~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i   80 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-AL--TSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI   80 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HT--TSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred             EEEEecCCcEEEecHHH-HH--HhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence            55554 58999999998 55  45699999975        1 24 66899999999999999     4   5666   4


Q ss_pred             CCCCcChHHHHHhhcccc
Q 012294           83 KAKAFDIEDLIEESKFYN  100 (466)
Q Consensus        83 ~~~~~~~~~Ll~EA~f~~  100 (466)
                      +  ..++.+|+.+|+|++
T Consensus        81 ~--~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           81 A--PEIALELLMAANFLD   96 (97)
T ss_dssp             C--GGGHHHHHHHHHHHT
T ss_pred             C--HHHHHHHHHHHhhhC
Confidence            3  456889999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.61  E-value=0.059  Score=53.95  Aligned_cols=98  Identities=11%  Similarity=0.216  Sum_probs=73.5

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      ..+|-.||..+.+....+....          ....+.|.+-.+.|++++|+     ..+.|.+||.++++++.++.+|.
T Consensus       300 D~~I~iwd~~t~~~~~~~~~~~----------~v~~~~~~~~~~~lv~~sg~-----~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDAHS----------QVCSILWSPHYKELISGHGF-----AQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEECSS----------CEEEEEEETTTTEEEEEECT-----TTCCEEEEETTTCCEEEEECCCS
T ss_pred             CCEEEEEeCCccccceeecccc----------ceeeeeecCCCCeEEEEEec-----CCCEEEEEECCCCcEEEEEcCCC
Confidence            5689999999944443333211          12345566677777777663     23579999999999999999998


Q ss_pred             ccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +.+..+++++++..|. -|+.||.|.+=|+....
T Consensus       365 ~~V~~l~~spdg~~l~-S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          365 SRVLSLTMSPDGATVA-SAAADETLRLWRCFELD  397 (420)
T ss_dssp             SCEEEEEECTTSSCEE-EEETTTEEEEECCSCSS
T ss_pred             CCEEEEEEcCCCCEEE-EEecCCeEEEEECCCCC
Confidence            8899999999998755 67899999888887654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.57  E-value=0.017  Score=55.76  Aligned_cols=157  Identities=14%  Similarity=0.169  Sum_probs=93.6

Q ss_pred             ceeeeeecccC---CcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEEC---CeEEE-EecCCCc
Q 012294          170 FTAVDSLLALS---PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSD---KHLFV-SFESGRR  239 (466)
Q Consensus       170 ~~~v~sl~~l~---~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~---~~IYa-Gg~~g~~  239 (466)
                      -+.+.++++..   +.+.|.|+  .++     ++-.||..+.+|.....+   ...+.+++...   +.+.| |+.    
T Consensus        57 ~~~V~~v~~~~~~~~~~l~s~s--~D~-----~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~----  125 (316)
T 3bg1_A           57 EGPVWQVAWAHPMYGNILASCS--YDR-----KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS----  125 (316)
T ss_dssp             SSCEEEEEECCGGGSSCEEEEE--TTS-----CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS----
T ss_pred             CccEEEEEeCCCCCCCEEEEEE--CCC-----EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC----
Confidence            34555666543   67788888  665     356677777666544322   23334455553   45555 655    


Q ss_pred             CCCeeEEEecCCCC---ccccccccccccCCceeecCcceeeEEee----------------CCeEEEEeecCCCCcccc
Q 012294          240 NSNSIMVYDINSLK---PVNEIGQNEIYGTDIESAIPATKLRWVSS----------------YNLLLASGSHSDISKVTG  300 (466)
Q Consensus       240 ~l~sVE~YDp~t~~---~~~~~~~~~~~~~~~w~~~~~~k~~~~~~----------------~~~Lyv~Gg~~g~~~~~~  300 (466)
                       ..+|-.||..+..   +...+.      +..   .....+.|.+.                .+.++++|+.|+      
T Consensus       126 -D~~i~lwd~~~~~~~~~~~~~~------~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~------  189 (316)
T 3bg1_A          126 -DGAISLLTYTGEGQWEVKKINN------AHT---IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN------  189 (316)
T ss_dssp             -SSCEEEEEECSSSCEEECCBTT------SSS---SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS------
T ss_pred             -CCCEEEEecCCCCCcceeeeec------ccc---CCcceEEEccccCCccccccccccCccccceEEEecCCC------
Confidence             3567888887621   111110      000   01112233221                145677887544      


Q ss_pred             eEEEEeCCCC---eeeeEEcCCcccccceeeecCC---CceEEEEEeeCceeEeecccc
Q 012294          301 NIKFWDIRSG---NVAWEVKDEVDCFSDVTVSDNL---SAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       301 sVe~yDprt~---~~vW~~~~~~d~~~~~~v~~~~---~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +|.+||.+++   +++-++.+|.+...+++.++++   ..++..|+.+|.|.+-|++..
T Consensus       190 ~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~  248 (316)
T 3bg1_A          190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA  248 (316)
T ss_dssp             BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred             eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence            7999999865   3455666777777888888876   356778899999999998874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.57  E-value=0.099  Score=57.04  Aligned_cols=200  Identities=13%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccc----cceeeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILT----HFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK  205 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~----~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp  205 (466)
                      ++.++.||++.. +.+..+|       |.. ........    +......+++.++.||+...   ++     .+-++|.
T Consensus        74 ~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg-----~l~alD~  145 (677)
T 1kb0_A           74 VVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DG-----RLIALDA  145 (677)
T ss_dssp             EEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TS-----EEEEEET
T ss_pred             EEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---CC-----EEEEEEC
Confidence            345889996543 4567777       877 33221100    00001112235677777643   22     2445566


Q ss_pred             CCC--ceeecCC------CCCceeEEEEECCeEEEEecCC-CcCCCeeEEEecCCCCccccccccc--cc----------
Q 012294          206 ETL--NWENVTR------SSSTVQAIGSSDKHLFVSFESG-RRNSNSIMVYDINSLKPVNEIGQNE--IY----------  264 (466)
Q Consensus       206 ~t~--~W~~va~------Mr~~~~Ava~l~~~IYaGg~~g-~~~l~sVE~YDp~t~~~~~~~~~~~--~~----------  264 (466)
                      .+.  .|+.-..      -.... +.++.++.||+|...+ ......|.+||+.|       |+..  ..          
T Consensus       146 ~tG~~~W~~~~~~~~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t-------G~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          146 ATGKEVWHQNTFEGQKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAET-------GERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             TTCCEEEEEETTTTCCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTT-------CCEEEEEESSCCCTTSCC
T ss_pred             CCCCEEeeecCCcCcCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCC-------CcEEEEeccCCCCccccc
Confidence            544  4765432      11112 2456799999933211 11246899999999       3322  00          


Q ss_pred             -------cCCcee-------e--cCc--ceeeEEeeCCeEEEEeecC------------CCCcccceEEEEeCCCCeeee
Q 012294          265 -------GTDIES-------A--IPA--TKLRWVSSYNLLLASGSHS------------DISKVTGNIKFWDIRSGNVAW  314 (466)
Q Consensus       265 -------~~~~w~-------~--~~~--~k~~~~~~~~~Lyv~Gg~~------------g~~~~~~sVe~yDprt~~~vW  314 (466)
                             +...|.       .  .+.  .....-+-.++||+..+..            |..-+.++|-.+|++|++++|
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                   000111       0  000  0011123478999877643            333356689999999999999


Q ss_pred             EEcCC-cc-----cccceeee---cCCC--ceEEEEEeeCceeEeeccccC
Q 012294          315 EVKDE-VD-----CFSDVTVS---DNLS--AIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       315 ~~~~~-~d-----~~~~~~v~---~~~~--~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +..-. .|     ..+...+.   .++.  .++.++.++|.||++|.++-+
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            97532 11     11122222   2442  445577799999999988744

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.56  E-value=0.068  Score=50.54  Aligned_cols=140  Identities=14%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccc
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      .+++.|+  .++     ++..||..+.+-...-.- ...+.+++.. ++.+++ |+.     ...|-.||..+.+++..+
T Consensus       186 ~~~~s~~--~d~-----~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          186 PIIVSCG--WDK-----LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK-----DGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             CEEEEEE--TTS-----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TCEEEEEETTTTEEEEEE
T ss_pred             cEEEEEc--CCC-----EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEEeccCceeeee
Confidence            4566666  444     345566665543221111 2334445554 345555 665     357889999996555544


Q ss_pred             cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC---------cccccceeee
Q 012294          259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE---------VDCFSDVTVS  329 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~---------~d~~~~~~v~  329 (466)
                      ....          ....+.+.+ ++.+ ++++.|      ++|.+||.+++.++++...+         ...+..++.+
T Consensus       254 ~~~~----------~v~~~~~~~-~~~~-~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  315 (340)
T 4aow_A          254 DGGD----------IINALCFSP-NRYW-LCAATG------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS  315 (340)
T ss_dssp             ECSS----------CEEEEEECS-SSSE-EEEEET------TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred             cCCc----------eEEeeecCC-CCce-eeccCC------CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence            4311          112223332 3444 445533      47999999999999887643         4455667888


Q ss_pred             cCCCceEEEEEeeCceeEeeccc
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      +++..|+ .|+.+|.|.+=|+++
T Consensus       316 ~dg~~l~-sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          316 ADGQTLF-AGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TTSSEEE-EEETTSCEEEEEEEC
T ss_pred             CCCCEEE-EEeCCCEEEEEeCCC
Confidence            8888765 688999999988886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.55  E-value=0.24  Score=47.90  Aligned_cols=220  Identities=14%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             eCCCCceeecCCC---CCceeEEEEECC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCcee----ecC-c
Q 012294          204 VKETLNWENVTRS---SSTVQAIGSSDK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIES----AIP-A  274 (466)
Q Consensus       204 dp~t~~W~~va~M---r~~~~Ava~l~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~----~~~-~  274 (466)
                      |+.+.+.+.+...   ......++. ++ .||+..+.    ..+|.+||..+...+..+.....+.+.+-.    ..+ +
T Consensus        83 ~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~  157 (361)
T 3scy_A           83 DKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYS----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHL  157 (361)
T ss_dssp             ETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETT----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCE
T ss_pred             eCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECC----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcc
Confidence            4444455444332   223333555 55 58884331    467899998763333222211101111000    000 1


Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-------e-------eeEEcCCcccccceeeecCCCceEEEEE
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-------V-------AWEVKDEVDCFSDVTVSDNLSAIYKVGI  340 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-------~-------vW~~~~~~d~~~~~~v~~~~~~i~~v~~  340 (466)
                      ..+.+.+-+..||+++.  +    .+.|.+||...+.       .       ... ..++.....+.+++++..||.++.
T Consensus       158 ~~~~~spdg~~l~~~~~--~----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          158 HCVRITPDGKYLLADDL--G----TDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             EEEEECTTSSEEEEEET--T----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEET
T ss_pred             eEEEECCCCCEEEEEeC--C----CCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEEEEcC
Confidence            12445454556888764  1    3478999766543       1       122 222333346889999999998877


Q ss_pred             eeCceeEeeccccCCCCCeEEeccCCccccccccc-cc-eeEEEE--ECCEEEEEe-C--CeEEEeEeeeecCCCCCCCC
Q 012294          341 NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE-GF-GCKIEC--HANQVFCGK-G--GEIELWSEIVMGSRKSREGG  413 (466)
Q Consensus       341 ~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~-~~-~~~~~~--~~~~lf~~~-~--~~~~v~~~~~~~~~~~~~~~  413 (466)
                      .++.|.+.|+.. +   .+..+..    ... .+. .. -..++.  -+..||++- +  +.|.||.--   ...    +
T Consensus       231 ~~~~v~v~~~~~-g---~~~~~~~----~~~-~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~---~~~----g  294 (361)
T 3scy_A          231 IGGTVIAFRYAD-G---MLDEIQT----VAA-DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD---ETN----G  294 (361)
T ss_dssp             TTCEEEEEEEET-T---EEEEEEE----EES-CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC---TTT----C
T ss_pred             CCCeEEEEEecC-C---ceEEeEE----Eec-CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc---CCC----C
Confidence            899999999883 1   2222222    110 011 01 113333  345688864 3  679999742   011    1


Q ss_pred             CcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEec
Q 012294          414 PLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       414 ~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~  460 (466)
                      .+ +.+      ...+  .+..+..+++-  |.+|+++-.+.+.|.||+
T Consensus       295 ~~-~~~------~~~~--~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          295 TL-TKV------GYQL--TGIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             CE-EEE------EEEE--CSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             cE-EEe------eEec--CCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            11 011      1111  13456667765  788999998889999975

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.50  E-value=0.66  Score=44.81  Aligned_cols=204  Identities=12%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             EEEEE-CCeEEEEecCCCcCCCeeEEEecCCC-CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          222 AIGSS-DKHLFVSFESGRRNSNSIMVYDINSL-KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       222 Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~-~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      ++++. ++.||+...    ..+.|.+||+... ..+..++....-+...-....|..+.+.+.++.||++.++.     .
T Consensus        95 gia~d~~g~l~v~d~----~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~  165 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDV----ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----N  165 (329)
T ss_dssp             EEEECTTSCEEEEET----TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----C
T ss_pred             EEEECCCCCEEEEEC----CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----C
Confidence            35655 567999322    1467999999762 13444433110000000111233344443478999998521     3


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcc----------cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccc
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVD----------CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMV  369 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d----------~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m  369 (466)
                      +.|.+|| .+++.++.+...+.          .-.+++++++++.||+....++.|.+.|+..-+    .+..-.    .
T Consensus       166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~~~~----~  236 (329)
T 3fvz_A          166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVREIK----H  236 (329)
T ss_dssp             CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEEC----C
T ss_pred             CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEEEEe----c
Confidence            4799999 56777777753322          134677888888889887788888888776311    111110    0


Q ss_pred             cccccccceeEEEEECCEEEEEeCC---------eEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEe
Q 012294          370 NGKRKEGFGCKIECHANQVFCGKGG---------EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLS  440 (466)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~lf~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~  440 (466)
                      ..  ....-..++...+.+|++.+.         .|.+|.-.     .   | .    +...  ++.. .........++
T Consensus       237 ~~--~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~-----~---g-~----~~~~--~~~~-~~~~~~p~~ia  298 (329)
T 3fvz_A          237 AS--FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS-----S---G-E----IIDV--FKPV-RKHFDMPHDIV  298 (329)
T ss_dssp             TT--TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT-----T---C-C----EEEE--ECCS-SSCCSSEEEEE
T ss_pred             cc--cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC-----C---C-e----EEEE--EcCC-CCccCCeeEEE
Confidence            00  011111344444666666442         34444321     0   0 1    1110  1110 11234577888


Q ss_pred             eecc-eeEEEeeccceEEEecc
Q 012294          441 FGGN-KMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       441 ~gg~-r~f~~~~~~~~~~vw~~  461 (466)
                      +.-| .|||+-...+.|-+|+.
T Consensus       299 ~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          299 ASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             ECTTSEEEEEESSSCCEEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEeC
Confidence            8655 89999988889999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.49  E-value=0.083  Score=49.41  Aligned_cols=97  Identities=11%  Similarity=0.218  Sum_probs=70.6

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      ...|..||..+.+......+..          ......+.+.++.|++++|.     ..+.|.+||.++++++.++.+|.
T Consensus       220 ~~~i~lwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~sg~-----~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAVDAHS----------QVCSILWSPHYKELISGHGF-----AQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             TCEEEEEETTTCCEEEEEECSS----------CEEEEEEETTTTEEEEEECT-----TTCCEEEEETTTCCEEEEECCCS
T ss_pred             CCEEEEEeccccccccccccee----------eeeeeeecccccceEEEEEc-----CCCEEEEEECCCCcEEEEEcCCC
Confidence            5678999998833222222211          12344566677777776652     24579999999999999999998


Q ss_pred             ccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      +.+..+++++++..|. -|+.||.|.+=|++.+
T Consensus       285 ~~V~~l~~spdg~~l~-S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          285 SRVLSLTMSPDGATVA-SAAADETLRLWRCFEL  316 (318)
T ss_dssp             SCEEEEEECTTSSCEE-EEETTTEEEEECCSCC
T ss_pred             CCEEEEEEcCCCCEEE-EEecCCeEEEEECCCC
Confidence            8889999999988754 6889999888887664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.11  Score=50.43  Aligned_cols=180  Identities=13%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEE
Q 012294          227 DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW  305 (466)
Q Consensus       227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~y  305 (466)
                      ++.+++ |+.     ..+|-.||..+.+.+..+....           ...+.+.+.    +++|+.|+      +|.+|
T Consensus        47 d~~~l~sg~~-----Dg~v~iwd~~~~~~~~~~~~~~-----------v~~~~~~~~----~~s~s~D~------~i~~w  100 (343)
T 3lrv_A           47 DKWVCMCRCE-----DGALHFTQLKDSKTITTITTPN-----------PRTGGEHPA----IISRGPCN------RLLLL  100 (343)
T ss_dssp             EEEEEEEEEE-----TTEEEEEEESSSSCEEEEEEEC-----------CCTTCCCCS----EEEECSTT------EEEEE
T ss_pred             CCCEEEEECC-----CCcEEEEECCCCcEEEEEecCC-----------ceeeeeCCc----eEEecCCC------eEEEE
Confidence            444555 666     3578899998844433332111           111222222    55666444      56666


Q ss_pred             eCC---------CCeeeeEEc-CCcccccceeeec--CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccc
Q 012294          306 DIR---------SGNVAWEVK-DEVDCFSDVTVSD--NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKR  373 (466)
Q Consensus       306 Dpr---------t~~~vW~~~-~~~d~~~~~~v~~--~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~  373 (466)
                      |..         +++++.... ++.+....+...+  ++. ++..|+.+|.+.+-|+++...    +.+..    ..  .
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~----~~~~~----~~--~  169 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQ----YIVHS----AK--S  169 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCE----EEEEC----CC--S
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcE----EEEEe----cC--C
Confidence            544         555444443 3335567777777  554 455788999999999987441    22221    00  0


Q ss_pred             cccceeEEEEE-CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEE
Q 012294          374 KEGFGCKIECH-ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFV  448 (466)
Q Consensus       374 ~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~  448 (466)
                      .. .-..++.+ +|+++++  .++.|.||.--    ..    ..+.. .+.    +    ...+.|+.++|-  |..|+.
T Consensus       170 ~~-~i~~~~~~pdg~~lasg~~dg~i~iwd~~----~~----~~~~~-~~~----~----~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          170 DV-EYSSGVLHKDSLLLALYSPDGILDVYNLS----SP----DQASS-RFP----V----DEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             SC-CCCEEEECTTSCEEEEECTTSCEEEEESS----CT----TSCCE-ECC----C----CTTSCEEEEEECTTSSEEEE
T ss_pred             CC-ceEEEEECCCCCEEEEEcCCCEEEEEECC----CC----CCCcc-EEe----c----cCCCCEEEEEEeCCCCEEEE
Confidence            11 11223332 4666664  78999999752    11    11101 111    1    135789999994  556666


Q ss_pred             EeeccceEEEeccCC
Q 012294          449 TRKGQQTVEVWQSSS  463 (466)
Q Consensus       449 ~~~~~~~~~vw~~~~  463 (466)
                      .- |. .|-||+...
T Consensus       232 ~~-~~-~v~iwd~~~  244 (343)
T 3lrv_A          232 EC-DQ-TVVCFDLRK  244 (343)
T ss_dssp             EE-SS-BEEEEETTS
T ss_pred             Ee-CC-eEEEEEcCC
Confidence            66 33 999998654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.37  E-value=0.058  Score=59.03  Aligned_cols=147  Identities=14%  Similarity=0.204  Sum_probs=90.0

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCCC-----------CceeEEEEECCeEEEEecCCCcCCCeeE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRSS-----------STVQAIGSSDKHLFVSFESGRRNSNSIM  245 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~Mr-----------~~~~Ava~l~~~IYaGg~~g~~~l~sVE  245 (466)
                      .++.||+.+.  ..      .+-++|..+.  .|+.-....           .+.+ +++.+++||+|..     ...+.
T Consensus        69 ~~g~vyv~~~--~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~v~~~-----dg~l~  134 (689)
T 1yiq_A           69 VDGVMYTTGP--FS------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG-VAVWKGKVYVGVL-----DGRLE  134 (689)
T ss_dssp             ETTEEEEECG--GG------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC-CEEETTEEEEECT-----TSEEE
T ss_pred             ECCEEEEEcC--CC------eEEEEECCCCceeEEEcCCCCccccccccccCCCCc-cEEECCEEEEEcc-----CCEEE
Confidence            7888988765  32      2445565443  476543320           1122 5778999999543     35689


Q ss_pred             EEecCCCCccccccccccccCCceeecCc--------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          246 VYDINSLKPVNEIGQNEIYGTDIESAIPA--------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       246 ~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      ++|..|       |+..      |+.-..        ..-.-+..++.||+..+. +..+..+.|..||++|++.+|++.
T Consensus       135 AlDa~T-------G~~~------W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          135 AIDAKT-------GQRA------WSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEETTT-------CCEE------EEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEECCC-------CCEe------eeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEec
Confidence            999999       5432      544221        001122368898885431 112246799999999999999985


Q ss_pred             C-Ccc------------------------------cccceeeecCCCceEEEEEeeC-------------------ceeE
Q 012294          318 D-EVD------------------------------CFSDVTVSDNLSAIYKVGINSG-------------------EVSY  347 (466)
Q Consensus       318 ~-~~d------------------------------~~~~~~v~~~~~~i~~v~~~~g-------------------~l~~  347 (466)
                      . +.+                              ....++++++++.|| ++..+|                   .|+.
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy-~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLY-IGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEE-EeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            2 111                              112456777888888 565554                   3888


Q ss_pred             eeccccC
Q 012294          348 MDLRKLG  354 (466)
Q Consensus       348 ~dlr~~~  354 (466)
                      .|+++-+
T Consensus       280 lD~~TG~  286 (689)
T 1yiq_A          280 VNADTGE  286 (689)
T ss_dssp             EETTTCC
T ss_pred             EEccCCc
Confidence            9988744

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.35  E-value=0.72  Score=44.13  Aligned_cols=225  Identities=12%  Similarity=0.185  Sum_probs=113.8

Q ss_pred             eeeCCCCceeecCCC--CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee
Q 012294          202 GYVKETLNWENVTRS--SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR  278 (466)
Q Consensus       202 ~ydp~t~~W~~va~M--r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~  278 (466)
                      .+|+.+.+++.+...  -....++++. +++||+....+  ..+.|.+||..+       +..+......-....+..+.
T Consensus        22 ~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~--~~~~v~~~~~~~-------g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           22 TLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED--DEGGIAAWQIDG-------QTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             EEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET--TEEEEEEEEEET-------TEEEEEEEEEEESCCCSEEE
T ss_pred             EEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC--CCceEEEEEecC-------CcEEEeeeeecCCCCCEEEE
Confidence            347776666543221  1122224544 56799832211  135789999876       22110000000001234455


Q ss_pred             EEeeCCeEEEEeecCCCCcccceEEEEeCCCC---eeeeEEcCCc---------ccccceeeecCCCceEEEEEeeCcee
Q 012294          279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSG---NVAWEVKDEV---------DCFSDVTVSDNLSAIYKVGINSGEVS  346 (466)
Q Consensus       279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~~~~~~---------d~~~~~~v~~~~~~i~~v~~~~g~l~  346 (466)
                      +.+-+..||+++..      .+.|.+||...+   +.+......+         .....+++++++. ||..+..++.+.
T Consensus        93 ~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~  165 (347)
T 3hfq_A           93 VDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVY  165 (347)
T ss_dssp             EETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred             ECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEE
Confidence            55556678887642      347999998633   2233332111         0123478899999 887777788899


Q ss_pred             EeeccccCCCCCeEEeccCCcccccccccccee-EEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceee
Q 012294          347 YMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC-KIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFR  421 (466)
Q Consensus       347 ~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~-~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r  421 (466)
                      +.|+..-+   ....+..    ...  ..+.++ .++..  +..||++  .++.|.||.--   ...    +.+. .+ .
T Consensus       166 ~~~~~~~g---~~~~~~~----~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~---~~~----g~~~-~~-~  227 (347)
T 3hfq_A          166 VYNVSDAG---QLSEQSV----LTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD---TQT----GAFT-QL-G  227 (347)
T ss_dssp             EEEECTTS---CEEEEEE----EEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE---TTT----TEEE-EE-E
T ss_pred             EEEECCCC---cEEEeee----EEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec---CCC----CceE-Ee-e
Confidence            99988422   2222221    110  111111 23333  3358886  46778888642   000    0000 00 0


Q ss_pred             ccccCcccc--CCCCceEEEeee--cceeEEEeeccceEEEeccC
Q 012294          422 KNLMGRVTD--MGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       422 ~~~~~~~~~--~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~  462 (466)
                      .  +...+.  .....+..+++-  |.+||++-...+.|.||+..
T Consensus       228 ~--~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          228 I--VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             E--EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             e--eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            0  000000  112356666665  77899998888899999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.34  E-value=0.26  Score=47.31  Aligned_cols=185  Identities=17%  Similarity=0.221  Sum_probs=101.9

Q ss_pred             EEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc
Q 012294          223 IGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       223 va~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      ++.. ++...+ |+.     ..+|-.||..+.+.+..+..     ...    +...+.+.+ ++.++++|+.|+      
T Consensus        71 ~~~s~dg~~l~s~s~-----D~~v~~wd~~~~~~~~~~~~-----h~~----~v~~~~~~~-~~~~l~s~s~D~------  129 (319)
T 3frx_A           71 CTLTADGAYALSASW-----DKTLRLWDVATGETYQRFVG-----HKS----DVMSVDIDK-KASMIISGSRDK------  129 (319)
T ss_dssp             EEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEEC-----CSS----CEEEEEECT-TSCEEEEEETTS------
T ss_pred             EEECCCCCEEEEEeC-----CCEEEEEECCCCCeeEEEcc-----CCC----cEEEEEEcC-CCCEEEEEeCCC------
Confidence            4444 334444 655     46799999998443332211     010    122334443 566677787544      


Q ss_pred             eEEEEeCCCCeeeeEEcCCcccccceeeecC-----CCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          301 NIKFWDIRSGNVAWEVKDEVDCFSDVTVSDN-----LSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~-----~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                      +|.+||.+. +++-+..+|.+....+.+.+.     .+.++..|+.+|.+.+-|+++...      ...    +.+ ...
T Consensus       130 ~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------~~~----~~~-h~~  197 (319)
T 3frx_A          130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI------EAD----FIG-HNS  197 (319)
T ss_dssp             CEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE------EEE----ECC-CCS
T ss_pred             eEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh------hee----ecC-CCC
Confidence            799999974 556777777666666666653     334566888999999999987431      111    111 011


Q ss_pred             cceeEEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeec
Q 012294          376 GFGCKIEC-HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKG  452 (466)
Q Consensus       376 ~~~~~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~  452 (466)
                       .=..++. -+|+++++  .++.|.||.--     .        .+..+. +      .....|..++|--|.-+++=..
T Consensus       198 -~v~~~~~sp~g~~l~s~~~dg~i~iwd~~-----~--------~~~~~~-~------~~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          198 -NINTLTASPDGTLIASAGKDGEIMLWNLA-----A--------KKAMYT-L------SAQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             -CEEEEEECTTSSEEEEEETTCEEEEEETT-----T--------TEEEEE-E------ECCSCEEEEEECSSSSEEEEEE
T ss_pred             -cEEEEEEcCCCCEEEEEeCCCeEEEEECC-----C--------CcEEEE-e------cCCCcEEEEEEcCCCCEEEEEc
Confidence             1111222 23444444  67789999742     1        111111 1      1234688888865554444444


Q ss_pred             cceEEEecc
Q 012294          453 QQTVEVWQS  461 (466)
Q Consensus       453 ~~~~~vw~~  461 (466)
                      ..++.||.-
T Consensus       257 ~~~i~v~~~  265 (319)
T 3frx_A          257 ATGIKVFSL  265 (319)
T ss_dssp             TTEEEEEEE
T ss_pred             CCCcEEEEe
Confidence            567888864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.30  E-value=0.18  Score=48.37  Aligned_cols=163  Identities=17%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      ..+.+.+ +|.||+++..++    .+.|.+||..+++  .+.+...+......+++++++..||..+..++.+.+.|+..
T Consensus        43 ~~~a~sp-dg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           43 TYLALSA-KDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CCEEECT-TCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEcc-CCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            3344444 666888875321    4579999998876  33333334556678899999999997766789999999875


Q ss_pred             cCCCCCeEEecc----CCcccccccccccee-EEEEE-CCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccceeeccc
Q 012294          353 LGDSSEWICLGD----GRKMVNGKRKEGFGC-KIECH-ANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERVFRKNL  424 (466)
Q Consensus       353 ~~~~~~W~~~~~----~~~~m~~~~~~~~~~-~~~~~-~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~  424 (466)
                      -+.   ...+..    ...+...  .....+ .++.. +|+||++.  ++.|.||.--    ..    +.+.. + ..  
T Consensus       118 ~g~---~~~~~~~~~~~~~p~~~--~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~----~~----g~~~~-~-~~--  180 (347)
T 3hfq_A          118 DGA---LTLTDTVQHSGHGPRPE--QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS----DA----GQLSE-Q-SV--  180 (347)
T ss_dssp             TSC---EEEEEEEECCCCCSSTT--CSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC----TT----SCEEE-E-EE--
T ss_pred             CCC---eeecceeecCCCCCCcc--ccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC----CC----CcEEE-e-ee--
Confidence            321   111111    0000000  001111 13332 56688884  5678888752    11    11111 0 00  


Q ss_pred             cCccccCCCCceEEEeee--cceeEEEeeccceEEEeccC
Q 012294          425 MGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       425 ~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~  462 (466)
                         .....+..+..++|-  |.+||++-...+.|.||+..
T Consensus       181 ---~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          181 ---LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             ---EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ---EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence               011123345556664  67899998888888888743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.29  E-value=0.061  Score=58.55  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=68.2

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC--C---------CceeEEEEECCeEEEEecCCCcCCCeeE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS--S---------STVQAIGSSDKHLFVSFESGRRNSNSIM  245 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M--r---------~~~~Ava~l~~~IYaGg~~g~~~l~sVE  245 (466)
                      .++.||+...  ..      .+-++|..+.  .|+.-...  .         ...+ +++.+++||++..     ...+.
T Consensus        65 ~~g~vyv~~~--~~------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~-----dg~l~  130 (668)
T 1kv9_A           65 HDGVIYTSMS--WS------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG-VALWGDKVYVGTL-----DGRLI  130 (668)
T ss_dssp             ETTEEEEEEG--GG------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC-CEEEBTEEEEECT-----TSEEE
T ss_pred             ECCEEEEECC--CC------eEEEEECCCChhceEECCCCCccccccccccCCccc-eEEECCEEEEEcC-----CCEEE
Confidence            7888888765  22      3445565443  47654332  0         0122 5678999999543     35689


Q ss_pred             EEecCCCCccccccccccccCCceeecCc-------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          246 VYDINSLKPVNEIGQNEIYGTDIESAIPA-------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       246 ~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      ++|+.|       |+..      |+.-..       ..-.-+..++.||+..+. +..+..+.|..||++|++++|++.
T Consensus       131 alD~~t-------G~~~------W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          131 ALDAKT-------GKAI------WSQQTTDPAKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEETTT-------CCEE------EEEECSCTTSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEECCC-------CCEe------eeeccCCCCCcceecCCCEEECCEEEEeCCC-CCcCCCCEEEEEECCCCcEEEEec
Confidence            999999       5433      554221       001112368888885431 112346799999999999999985

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.25  E-value=0.076  Score=57.94  Aligned_cols=113  Identities=10%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC-C---------CceeEEEEECCeEEEEecCCCcCCCeeEE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS-S---------STVQAIGSSDKHLFVSFESGRRNSNSIMV  246 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M-r---------~~~~Ava~l~~~IYaGg~~g~~~l~sVE~  246 (466)
                      .++.||+...  .      ..+-++|..+.  .|+.-... .         ....++++.++.||++..     ...+-+
T Consensus        76 ~~g~vyv~~~--~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-----dg~l~a  142 (677)
T 1kb0_A           76 VDGIMYVSAS--W------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-----DGRLIA  142 (677)
T ss_dssp             ETTEEEEECG--G------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-----TSEEEE
T ss_pred             ECCEEEEECC--C------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-----CCEEEE
Confidence            7889998876  3      23455666543  47654432 0         011236778999999543     356899


Q ss_pred             EecCCCCccccccccccccCCceeecCc--------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPA--------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~--------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      +|..|       |+..      |+.-..        ..-.-+..++.||+.++. +..+..++|..||++|++.+|++..
T Consensus       143 lD~~t-------G~~~------W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          143 LDAAT-------GKEV------WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG-AEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             EETTT-------CCEE------EEEETTTTCCSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             EECCC-------CCEE------eeecCCcCcCcCcccccCcEEECCEEEEEecc-cccCCCCEEEEEECCCCcEEEEecc
Confidence            99999       4422      544221        111122468899886542 1123467999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.22  E-value=0.088  Score=52.08  Aligned_cols=70  Identities=19%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee----eeEEcCCcc------------cccceeeecCCCceEEE
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV----AWEVKDEVD------------CFSDVTVSDNLSAIYKV  338 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~----vW~~~~~~d------------~~~~~~v~~~~~~i~~v  338 (466)
                      ..+.|.+-+..++++|+.||      +|.+||.++++.    +..+..+.+            .+..+..++++..|. .
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~  302 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKG------TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM-T  302 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTS------CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE-E
T ss_pred             EEEEECCCCCcEEEEEeCCC------eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE-E
Confidence            34556655546778887544      799999999987    677777765            678888999887755 5


Q ss_pred             EEeeCceeEeeccc
Q 012294          339 GINSGEVSYMDLRK  352 (466)
Q Consensus       339 ~~~~g~l~~~dlr~  352 (466)
                      +.. |.|.+-|+++
T Consensus       303 ~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          303 RDY-LSVKVWDLNM  315 (447)
T ss_dssp             EES-SEEEEEETTC
T ss_pred             eeC-CeEEEEeCCC
Confidence            556 9999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.22  E-value=0.35  Score=51.86  Aligned_cols=146  Identities=13%  Similarity=0.265  Sum_probs=91.5

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC  361 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~  361 (466)
                      -++.+.++|+.|      ++|.+||.++++.+.++.+|.+.+..+..++++..|. .|+.++.+.+-|++.-.   .+ .
T Consensus       440 ~~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~---~~-~  508 (694)
T 3dm0_A          440 SDGQFALSGSWD------GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGEC---KY-T  508 (694)
T ss_dssp             TTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCE---EE-E
T ss_pred             CCCCEEEEEeCC------CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCc---ce-e
Confidence            366777888754      4899999999999999999988888899999888754 78899999888875421   11 1


Q ss_pred             eccCCccccccccccceeEEEEEC----CEEE-EEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCce
Q 012294          362 LGDGRKMVNGKRKEGFGCKIECHA----NQVF-CGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKI  436 (466)
Q Consensus       362 ~~~~~~~m~~~~~~~~~~~~~~~~----~~lf-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i  436 (466)
                      +...   ...  .+..=..++...    ..|+ ++.++.|.||.--    ..         + .++.+-+     ..+.|
T Consensus       509 ~~~~---~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~---------~-~~~~~~~-----h~~~v  564 (694)
T 3dm0_A          509 ISEG---GEG--HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS----NC---------K-LRSTLAG-----HTGYV  564 (694)
T ss_dssp             ECSS---TTS--CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT----TC---------C-EEEEECC-----CSSCE
T ss_pred             eccC---CCC--CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC----CC---------c-EEEEEcC-----CCCCE
Confidence            1110   000  010111222221    1233 3468899999742    11         1 1222222     35679


Q ss_pred             EEEeeec-ceeEEEeeccceEEEeccC
Q 012294          437 TNLSFGG-NKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       437 ~~~~~gg-~r~f~~~~~~~~~~vw~~~  462 (466)
                      +.+++-- ++++++=.....|-||+..
T Consensus       565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          565 STVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            8888853 2566777777789999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.21  E-value=0.46  Score=44.19  Aligned_cols=95  Identities=19%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294          242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD  321 (466)
Q Consensus       242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d  321 (466)
                      ++|-.||.+|.+.+..+.-..   +..    ....+.|.+ ++.++++|+.||      +|.+||.++++++.+...|..
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~---~~~----~V~~v~~~~-~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~~h~~  110 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQ---PGE----YISSVAWIK-EGNYLAVGTSSA------EVQLWDVQQQKRLRNMTSHSA  110 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCS---TTC----CEEEEEECT-TSSEEEEEETTS------EEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCCCEEEEEEecC---CCC----eEEEEEECC-CCCEEEEEECCC------cEEEeecCCceeEEEecCccc
Confidence            578899999844433331100   011    112344443 566777888544      899999999999999988864


Q ss_pred             cccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      ....  ++.++ .+...+..++.+.+.+....
T Consensus       111 ~~~~--~~~~~-~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A          111 RVGS--LSWNS-YILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             CEEE--EEEET-TEEEEEETTSEEEEEETTSS
T ss_pred             eEEE--eecCC-CEEEEEecCCceEeeecCCC
Confidence            4433  33333 34557778888777666553

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.16  E-value=0.091  Score=52.38  Aligned_cols=67  Identities=12%  Similarity=0.033  Sum_probs=56.4

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++.++|+|+.|+      +|++||.+++..+-....+......+...+++..++..|..+|.+.+-|+++-.
T Consensus       154 ~d~~~las~s~D~------tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          154 LAEQVIASVGDDC------TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEEEETTS------EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             CCCCEEEEEECCC------eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            4788999999544      899999999988877777766667788888988888899999999999998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.15  E-value=0.84  Score=42.41  Aligned_cols=184  Identities=10%  Similarity=0.084  Sum_probs=94.0

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      ++.+|+.+.  ..    -..+..||+....-...... .....++++. ++.||++..    ..+.|.+||+.. +.+..
T Consensus        88 ~g~l~v~~~--~~----~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~~g-~~~~~  156 (286)
T 1q7f_A           88 SGDIIVTER--SP----THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC----KVMRVIIFDQNG-NVLHK  156 (286)
T ss_dssp             TTEEEEEEC--GG----GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEET----TTTEEEEECTTS-CEEEE
T ss_pred             CCeEEEEcC--CC----CCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEEC----CCCEEEEEcCCC-CEEEE
Confidence            678888864  10    12355667544332222211 1223335554 568999332    135789999865 11111


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc--ccccceeeecCCCce
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV--DCFSDVTVSDNLSAI  335 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~v~~~~~~i  335 (466)
                      ++...    ..   ..+..+.+- -+|.||++...      .+.|.+||+ +++.++++..++  ..-..+++++++ .|
T Consensus       157 ~~~~~----~~---~~p~~i~~~-~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G-~l  220 (286)
T 1q7f_A          157 FGCSK----HL---EFPNGVVVN-DKQEIFISDNR------AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNG-EI  220 (286)
T ss_dssp             EECTT----TC---SSEEEEEEC-SSSEEEEEEGG------GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTC-CE
T ss_pred             eCCCC----cc---CCcEEEEEC-CCCCEEEEECC------CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCC-CE
Confidence            11100    00   012222222 36789998752      447999998 455667765442  233566777766 57


Q ss_pred             EEEEEeeC-ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEE-eCCeEEEeEe
Q 012294          336 YKVGINSG-EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG-KGGEIELWSE  401 (466)
Q Consensus       336 ~~v~~~~g-~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~-~~~~~~v~~~  401 (466)
                      |.....++ .|.+.|..  + .-.+. +...   .    ....-..|+.. +|+||++ .++.|.||.-
T Consensus       221 ~v~~~~~~~~i~~~~~~--g-~~~~~-~~~~---~----~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQD--G-QLISA-LESK---V----KHAQCFDVALMDDGSVVLASKDYRLYIYRY  278 (286)
T ss_dssp             EEEECSSSCEEEEECTT--S-CEEEE-EEES---S----CCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCC--C-CEEEE-Eccc---C----CCCcceeEEECCCCcEEEECCCCeEEEEEc
Confidence            76666665 78777632  1 10011 1110   0    11011234443 6789987 4667999964

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.15  E-value=0.3  Score=52.08  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=47.3

Q ss_pred             eCCeEEEEeecCC---------CCcccceEEEEeCCCCeeeeEEcCC-cc-----cccceeee---cCCC--ceEEEEEe
Q 012294          282 SYNLLLASGSHSD---------ISKVTGNIKFWDIRSGNVAWEVKDE-VD-----CFSDVTVS---DNLS--AIYKVGIN  341 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g---------~~~~~~sVe~yDprt~~~vW~~~~~-~d-----~~~~~~v~---~~~~--~i~~v~~~  341 (466)
                      ..++||+..|...         ...+.++|-.+|++|++++|+.... .|     ..+...+.   .++.  .++.++..
T Consensus       245 ~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~  324 (571)
T 2ad6_A          245 KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDR  324 (571)
T ss_dssp             TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECT
T ss_pred             CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCC
Confidence            4689999876421         1224468999999999999998532 11     12222222   2454  34556778


Q ss_pred             eCceeEeeccccC
Q 012294          342 SGEVSYMDLRKLG  354 (466)
Q Consensus       342 ~g~l~~~dlr~~~  354 (466)
                      +|.||++|..+-+
T Consensus       325 ~G~l~~lD~~tG~  337 (571)
T 2ad6_A          325 NGILYTLNRENGN  337 (571)
T ss_dssp             TSEEEEEETTTCC
T ss_pred             CcEEEEEECCCCC
Confidence            9999999987643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.11  E-value=0.062  Score=55.07  Aligned_cols=101  Identities=11%  Similarity=0.137  Sum_probs=70.1

Q ss_pred             CCeeEEEecCCC-----CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          241 SNSIMVYDINSL-----KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       241 l~sVE~YDp~t~-----~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                      ..+|..||..+.     +....+.....+.+.   ..+...+.|.+.++.++++|+.||      +|.+||.+++..+..
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~las~s~Dg------~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA---GGMVIDMKWNPTVPSMVAVCLADG------SIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG---GGSEEEEEECSSCTTEEEEEETTS------CEEEEEESSSEEEEE
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCC---CCceEEEEECCCCCCEEEEEECCC------eEEEEEcCCCcceee
Confidence            578999998773     111111111111111   113446678877678888888554      799999999988877


Q ss_pred             EcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          316 VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       316 ~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      ..+|.+....++.++++..|+ +|..+|.|.+-|+|
T Consensus       188 ~~~~~~~v~~v~wspdg~~la-sgs~dg~v~iwd~~  222 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPKGKQLA-VGKQNGTVVQYLPT  222 (434)
T ss_dssp             EECGGGCEEEEEECTTSSCEE-EEETTSCEEEECTT
T ss_pred             ccCCCCceeEEEEcCCCCEEE-EEcCCCcEEEEccC
Confidence            777777778888999977655 78899999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.11  E-value=0.2  Score=47.48  Aligned_cols=152  Identities=12%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             eeeeeecc---cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEE
Q 012294          171 TAVDSLLA---LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       171 ~~v~sl~~---l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~Y  247 (466)
                      ..+.++.+   -++.+++.|+  .+|     .+..||..+.+-...-.......++....+.++++..     ...+..|
T Consensus       128 ~~v~~~~~~~~~~~~~l~~~~--~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~  195 (368)
T 3mmy_A          128 APVKTIHWIKAPNYSCVMTGS--WDK-----TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA-----ERGLIVY  195 (368)
T ss_dssp             SCEEEEEEEECSSCEEEEEEE--TTS-----EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG-----GGCEEEE
T ss_pred             CceEEEEEEeCCCCCEEEEcc--CCC-----cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC-----CCcEEEE
Confidence            34445554   3556777777  555     3556666554311111112233335666676766443     3467899


Q ss_pred             ecCCCCccccccccccccCCceeecC-----c-ceeeEEe---eCCeEEEEeecCCCCcccceEEEEeCCCC---eeeeE
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIP-----A-TKLRWVS---SYNLLLASGSHSDISKVTGNIKFWDIRSG---NVAWE  315 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~-----~-~k~~~~~---~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~  315 (466)
                      |..+..       ..      +....     . ..+....   .....+++|+.      .+.|.+||.++.   ..+.+
T Consensus       196 ~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------dg~i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          196 QLENQP-------SE------FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI------EGRVAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             ECSSSC-------EE------EEECCCSCSSCEEEEEEEECTTSCEEEEEEEET------TSEEEEEESSCSCHHHHSEE
T ss_pred             Eecccc-------ch------hhhccccccCCCceEEEcccCCCCCCeEEEecC------CCcEEEEecCCCCcccccee
Confidence            988721       11      11110     0 0111111   12233677774      448999999998   55677


Q ss_pred             EcCCcc------------cccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          316 VKDEVD------------CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       316 ~~~~~d------------~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +..+..            ....+..++++..| ..|+.+|.|.+-|+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTTTE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCCCc
Confidence            766643            57778888888665 478899999999998643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.10  E-value=0.81  Score=41.82  Aligned_cols=225  Identities=10%  Similarity=0.029  Sum_probs=116.9

Q ss_pred             cCCcEEE-EecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAA-AGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYa-iGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      -++.+|+ ...  .+     ..+..||+.+......... -....++++. ++.||++..     .+.|-+||+.+..  
T Consensus        33 ~~g~l~v~~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-----~~~i~~~d~~~~~--   98 (270)
T 1rwi_B           33 SAGNVYVTSEG--MY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-----NNRVVTLAAGSNN--   98 (270)
T ss_dssp             TTCCEEEEECS--SS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-----TTEEEEECTTCSC--
T ss_pred             CCCCEEEEccC--CC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-----CCEEEEEeCCCce--
Confidence            3567887 423  21     1244566655443322211 1122225554 568999432     2478999998721  


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCce
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                           ...+....  ...+..+... -+|.||++...      .+.|.+||+.+...............++++++++. |
T Consensus        99 -----~~~~~~~~--~~~p~~i~~~-~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l  163 (270)
T 1rwi_B           99 -----QTVLPFDG--LNYPEGLAVD-TQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V  163 (270)
T ss_dssp             -----CEECCCCS--CSSEEEEEEC-TTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-E
T ss_pred             -----EeeeecCC--cCCCcceEEC-CCCCEEEEECC------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-E
Confidence                 11110000  0012222222 36789998652      34789998877764333222222345677887775 8


Q ss_pred             EEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEEe--CCeEEEeEeeeecCCCCCCC
Q 012294          336 YKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCGK--GGEIELWSEIVMGSRKSREG  412 (466)
Q Consensus       336 ~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~--~~~~~v~~~~~~~~~~~~~~  412 (466)
                      |.....++.|+..|+.....    .....  ..+.      .-..|+.. +|.||++.  ++.|.+|..-     .    
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~----~~~~~--~~~~------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----~----  222 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQ----VVLPF--TDIT------APWGIAVDEAGTVYVTEHNTNQVVKLLAG-----S----  222 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCE----EECCC--SSCC------SEEEEEECTTCCEEEEETTTSCEEEECTT-----C----
T ss_pred             EEEECCCCEEEEEecCCCce----Eeecc--cCCC------CceEEEECCCCCEEEEECCCCcEEEEcCC-----C----
Confidence            87666778888888754221    11111  0011      22245554 46999986  5678877531     1    


Q ss_pred             CCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEeccCC
Q 012294          413 GPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       413 ~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ....  ...        ......+..+++.. ++|||+-...+.|.+++...
T Consensus       223 ~~~~--~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          223 TTST--VLP--------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             SCCE--ECC--------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             Ccce--eec--------cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            1100  000        01224688888864 37999988888899887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.06  E-value=0.93  Score=48.29  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             eEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          285 LLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       285 ~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      .+++++..      .+.+.++|+++++++|+..
T Consensus       317 ~~v~~~~~------~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          317 PLLSHIDR------NGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEEECT------TSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCC------CcEEEEEECCCCCEEeeec
Confidence            35555553      4479999999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.06  E-value=0.47  Score=46.72  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE--------EcCCcccccceeeecCCCceEEEEEeeCceeE
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE--------VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSY  347 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~--------~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~  347 (466)
                      .+.|.+ ++.++++| .|      ++|.+||.++....+.        ..++.+....+..++++..++..|+.+|.|.+
T Consensus       182 ~~~~~~-~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          182 SISINS-DYETYLSA-DD------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             EEEECT-TSSEEEEE-CS------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcC-CCCEEEEe-CC------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            445655 55566665 34      3799999996554444        34566677888899998677789999999999


Q ss_pred             eeccccC
Q 012294          348 MDLRKLG  354 (466)
Q Consensus       348 ~dlr~~~  354 (466)
                      -|+|+..
T Consensus       254 wd~~~~~  260 (447)
T 3dw8_B          254 CDMRASA  260 (447)
T ss_dssp             EETTTCS
T ss_pred             EECcCCc
Confidence            9999855

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.04  E-value=0.87  Score=43.93  Aligned_cols=153  Identities=13%  Similarity=0.155  Sum_probs=88.9

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecC---------CC-CCceeEEEEE-C-CeEEEEecCCCcCCCeeEEE
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT---------RS-SSTVQAIGSS-D-KHLFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va---------~M-r~~~~Ava~l-~-~~IYaGg~~g~~~l~sVE~Y  247 (466)
                      ++.||+..+  +..    +.+..||+....-....         +- -....++++. + +.||+...    ..+.|.+|
T Consensus       154 ~g~lyv~d~--~~~----~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~----~~~~I~~~  223 (329)
T 3fvz_A          154 TGAVFVSDG--YCN----SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR----ENGRIQCF  223 (329)
T ss_dssp             TCCEEEEEC--SSC----CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred             CCeEEEEeC--CCC----CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC----CCCEEEEE
Confidence            578999975  311    24556665433222221         01 0123346665 3 78999322    14689999


Q ss_pred             ecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCc-ccceEEEEeCCCCeeeeEEc---CCcccc
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISK-VTGNIKFWDIRSGNVAWEVK---DEVDCF  323 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~-~~~sVe~yDprt~~~vW~~~---~~~d~~  323 (466)
                      |+.+-+.+..+.... ++.      .+..+.+.+  +.+|++.|...... ....|..||+.+++++..+.   .+...-
T Consensus       224 ~~~~G~~~~~~~~~~-~~~------~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p  294 (329)
T 3fvz_A          224 KTDTKEFVREIKHAS-FGR------NVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP  294 (329)
T ss_dssp             ETTTCCEEEEECCTT-TTT------CEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE
T ss_pred             ECCCCcEEEEEeccc-cCC------CcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe
Confidence            999744444332211 000      112233333  78888777433211 23479999999999887763   333344


Q ss_pred             cceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          324 SDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       324 ~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      .++++++++ .||+....++.|...++..
T Consensus       295 ~~ia~~~dG-~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          295 HDIVASEDG-TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred             eEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence            577888887 8888888888888877754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.03  E-value=0.19  Score=54.67  Aligned_cols=194  Identities=12%  Similarity=0.122  Sum_probs=102.8

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccc-c--ce-eeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILT-H--FT-AVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK  205 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~-~--~~-~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp  205 (466)
                      ++.++.||+... |.+..+|       |.. ........ .  .. ....+++.+++||+...   ++     .+-.+|.
T Consensus        63 ~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg-----~l~alD~  134 (668)
T 1kv9_A           63 LFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DG-----RLIALDA  134 (668)
T ss_dssp             EEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TS-----EEEEEET
T ss_pred             EEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CC-----EEEEEEC
Confidence            345889996533 4567777       877 33221100 0  00 00111225667776543   22     2455666


Q ss_pred             CCC--ceeecCC----C-CCceeEEEEECCeEEEEecCCC-cCCCeeEEEecCCCCccccccccccccCCceeecC----
Q 012294          206 ETL--NWENVTR----S-SSTVQAIGSSDKHLFVSFESGR-RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP----  273 (466)
Q Consensus       206 ~t~--~W~~va~----M-r~~~~Ava~l~~~IYaGg~~g~-~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~----  273 (466)
                      .+.  .|+.-..    . ..... -++.++.||+|..++. .....|..||+.|       |+..      |+.-.    
T Consensus       135 ~tG~~~W~~~~~~~~~~~~~~~~-P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t-------G~~~------W~~~~~~~~  200 (668)
T 1kv9_A          135 KTGKAIWSQQTTDPAKPYSITGA-PRVVKGKVIIGNGGAEYGVRGFVSAYDADT-------GKLA------WRFYTVPGD  200 (668)
T ss_dssp             TTCCEEEEEECSCTTSSCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTT-------CCEE------EEEESSCCC
T ss_pred             CCCCEeeeeccCCCCCcceecCC-CEEECCEEEEeCCCCCcCCCCEEEEEECCC-------CcEE------EEecccCCC
Confidence            554  4775432    1 12222 4567999999432111 1246899999998       3211      22110    


Q ss_pred             c--------------------------c-----eeeEEeeCCeEEEEeecC------------CCCcccceEEEEeCCCC
Q 012294          274 A--------------------------T-----KLRWVSSYNLLLASGSHS------------DISKVTGNIKFWDIRSG  310 (466)
Q Consensus       274 ~--------------------------~-----k~~~~~~~~~Lyv~Gg~~------------g~~~~~~sVe~yDprt~  310 (466)
                      +                          .     ....-+..++||+..+..            |..-+.++|-.+|++|+
T Consensus       201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG  280 (668)
T 1kv9_A          201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG  280 (668)
T ss_dssp             TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred             CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence            0                          0     001112468899876532            22234568999999999


Q ss_pred             eeeeEEcCC-ccc-----ccce---eeecCCC--ceEEEEEeeCceeEeeccccC
Q 012294          311 NVAWEVKDE-VDC-----FSDV---TVSDNLS--AIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       311 ~~vW~~~~~-~d~-----~~~~---~v~~~~~--~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +++|+.... .|.     -..+   ++..++.  .+..++..+|.||++|.++-+
T Consensus       281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          281 KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence            999998642 211     1111   1222443  234467799999999977643

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=96.00  E-value=0.0013  Score=58.12  Aligned_cols=79  Identities=11%  Similarity=0.231  Sum_probs=62.8

Q ss_pred             EEEEE-CCeEEEEeHHHhhccCCCCccccccCC---Cce-eEcCCchhHHHHhcccccCc--------------------
Q 012294           25 VTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS---THR-FIDRDPELFSILLSLLRTGN--------------------   79 (466)
Q Consensus        25 V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~---~~~-fiDRDp~~F~~IL~ylrtG~--------------------   79 (466)
                      |+|.- .|+.|.+++.+. +  .+.+|+.|+.+   +++ +.+.++.+++.|++|++..+                    
T Consensus         4 v~L~SsDg~~f~v~~~vA-~--~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~   80 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEIA-K--QSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP   80 (141)
T ss_dssp             EEEECTTSCEEEEEGGGG-G--TCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred             EEEEeCCCCEEEecHHHH-H--HhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence            77777 689999999984 4  35699999974   344 66999999999999998765                    


Q ss_pred             ------cccCCCCcChHHHHHhhccccchhhHHhh
Q 012294           80 ------LPSKAKAFDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        80 ------l~~~~~~~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                            +.+  +...+.+|+.+|+|++|..|++.|
T Consensus        81 ~wD~~F~~v--d~~~l~eLi~AAnyL~I~~Lldl~  113 (141)
T 1fs1_B           81 VWDQEFLKV--DQGTLFELILAANYLDIKGLLDVT  113 (141)
T ss_dssp             HHHHHHTCS--CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhC--CHHHHHHHHHHHHHHhhhHHHHHH
Confidence                  221  123467899999999999999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.93  E-value=0.35  Score=47.69  Aligned_cols=64  Identities=11%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE-cCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV-KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~-~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      -++.++|+|+.|+      +|.+||.++++++.+. .+|.+.+..++.++++..| +-|+.|++|-+-||..
T Consensus       279 pdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          279 MKGELAVLASNDN------SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV-ASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEEETTS------CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred             CCCCceEEEcCCC------EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence            3778889998554      7999999999999986 5788888999999998875 4688999999999864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.93  E-value=0.46  Score=50.86  Aligned_cols=73  Identities=16%  Similarity=0.044  Sum_probs=47.4

Q ss_pred             eCCeEEEEeecC-----------C------CCcccceEEEEeCCCCeeeeEEcCC-cc-----ccc-ceeee---cCCC-
Q 012294          282 SYNLLLASGSHS-----------D------ISKVTGNIKFWDIRSGNVAWEVKDE-VD-----CFS-DVTVS---DNLS-  333 (466)
Q Consensus       282 ~~~~Lyv~Gg~~-----------g------~~~~~~sVe~yDprt~~~vW~~~~~-~d-----~~~-~~~v~---~~~~-  333 (466)
                      ..++||+..+..           |      ...+.++|-.+|++|++++|+.... .|     ..+ .+-++   .++. 
T Consensus       256 ~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~  335 (582)
T 1flg_A          256 ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKI  335 (582)
T ss_dssp             TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCE
T ss_pred             CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCE
Confidence            468999987732           1      1224478999999999999998432 22     112 22223   2443 


Q ss_pred             -ceEEEEEeeCceeEeeccccC
Q 012294          334 -AIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       334 -~i~~v~~~~g~l~~~dlr~~~  354 (466)
                       .++.++.++|.||+.|.++-+
T Consensus       336 ~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          336 VKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             EEEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEEECCCceEEEEECCCCC
Confidence             345567799999999987733

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.92  E-value=0.28  Score=53.57  Aligned_cols=200  Identities=12%  Similarity=0.113  Sum_probs=102.4

Q ss_pred             eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccc-cc---eeeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294          139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILT-HF---TAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK  205 (466)
Q Consensus       139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~-~~---~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp  205 (466)
                      ++.++.||+... +.+..+|       |.. ......-. ..   .....+++.++.||+...   ++     .+-.+|.
T Consensus        67 ~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg-----~l~AlDa  138 (689)
T 1yiq_A           67 IVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DG-----RLEAIDA  138 (689)
T ss_dssp             EEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TS-----EEEEEET
T ss_pred             EEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CC-----EEEEEEC
Confidence            345889996533 4567777       877 33221100 00   000112235677776543   22     2445566


Q ss_pred             CCC--ceeecCC--C----CCceeEEEEECCeEEEEecCCC-cCCCeeEEEecCCCCccccccccc--c-----------
Q 012294          206 ETL--NWENVTR--S----SSTVQAIGSSDKHLFVSFESGR-RNSNSIMVYDINSLKPVNEIGQNE--I-----------  263 (466)
Q Consensus       206 ~t~--~W~~va~--M----r~~~~Ava~l~~~IYaGg~~g~-~~l~sVE~YDp~t~~~~~~~~~~~--~-----------  263 (466)
                      .+.  .|+.-..  .    ..... -++.++.||+|...+. .....|.+||+.|       |+..  .           
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~~~s-P~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-------G~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          139 KTGQRAWSVDTRADHKRSYTITGA-PRVVNGKVVIGNGGAEFGVRGYVTAYDAET-------GKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             TTCCEEEEEECCSCTTSCCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTT-------CCEEEEEESSCCCTTSCC
T ss_pred             CCCCEeeeecCcCCCCCCccccCC-cEEECCEEEEEeCCCccCCCCEEEEEECCC-------CcEEEEecccCCCccccc
Confidence            544  4765432  1    11222 4567999999332111 1246899999999       3321  0           


Q ss_pred             -----------ccCCceeecCcc-----eeeEEeeCCeEEEEeecC------------CCCcccceEEEEeCCCCeeeeE
Q 012294          264 -----------YGTDIESAIPAT-----KLRWVSSYNLLLASGSHS------------DISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       264 -----------~~~~~w~~~~~~-----k~~~~~~~~~Lyv~Gg~~------------g~~~~~~sVe~yDprt~~~vW~  315 (466)
                                 +.+..|......     ....-+-.++||+..+..            |..-+.++|-.+|++|++.+|+
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~  290 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH  290 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence                       001111110000     011112468899876632            2223456899999999999999


Q ss_pred             EcCC-ccc-----ccceee---ecCCC--ceEEEEEeeCceeEeeccccC
Q 012294          316 VKDE-VDC-----FSDVTV---SDNLS--AIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       316 ~~~~-~d~-----~~~~~v---~~~~~--~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .... .|.     -..+.+   ..++.  .++.++.++|.||+.|.++-+
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence            8542 211     111111   12333  234466799999999987744

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.89  E-value=1.2  Score=42.15  Aligned_cols=221  Identities=13%  Similarity=0.075  Sum_probs=113.4

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      ++.||++..  ..     ..+-+||+.+.+-...... ....+++.. ++.||++.      .+.|.+||+++       
T Consensus        24 ~~~l~~~d~--~~-----~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~dG~l~v~~------~~~l~~~d~~~-------   82 (297)
T 3g4e_A           24 SNSLLFVDI--PA-----KKVCRWDSFTKQVQRVTMD-APVSSVALRQSGGYVATI------GTKFCALNWKE-------   82 (297)
T ss_dssp             TTEEEEEET--TT-----TEEEEEETTTCCEEEEECS-SCEEEEEEBTTSSEEEEE------TTEEEEEETTT-------
T ss_pred             CCEEEEEEC--CC-----CEEEEEECCCCcEEEEeCC-CceEEEEECCCCCEEEEE------CCeEEEEECCC-------
Confidence            356787765  32     2356778877654322111 223335554 56788843      24788999987       


Q ss_pred             ccccccc-C-CceeecCcceeeEEeeCCeEEEEeecCCCC-----cccceEEEEeCCCCeeeeEEcCCcccccceeeecC
Q 012294          259 GQNEIYG-T-DIESAIPATKLRWVSSYNLLLASGSHSDIS-----KVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDN  331 (466)
Q Consensus       259 ~~~~~~~-~-~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~-----~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~  331 (466)
                      ++.+.+. . ..-....+-.+.+ .-+|.||+.....+..     ...+.|-++|+.... .- .......--.++++++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~-~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KK-YFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EE-EEEEESBEEEEEECTT
T ss_pred             CcEEEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EE-EeeccccccceEEcCC
Confidence            2211110 0 0000000001112 2467788866433211     123468888886332 11 1111222246788899


Q ss_pred             CCceEEEEEeeCceeEeeccccCCC----CCeEEeccCCccccccccccceeEEEE-ECCEEEEEe--CCeEEEeEeeee
Q 012294          332 LSAIYKVGINSGEVSYMDLRKLGDS----SEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCGK--GGEIELWSEIVM  404 (466)
Q Consensus       332 ~~~i~~v~~~~g~l~~~dlr~~~~~----~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~~--~~~~~v~~~~~~  404 (466)
                      +..||.....++.|+..|+....+.    ..+..+..         ..+.--.++. -+|+||++.  ++.|.+|..   
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~---------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~---  227 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK---------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP---  227 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG---------GGCEEEEEEEBTTSCEEEEEETTTEEEEECT---
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC---------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC---
Confidence            9999988888899999887421111    01111111         0111123343 357899885  455777753   


Q ss_pred             cCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec---ceeEEEeec
Q 012294          405 GSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG---NKMFVTRKG  452 (466)
Q Consensus       405 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~  452 (466)
                        +.        .++.+.     .+ .....++.++|||   ++||||-..
T Consensus       228 --~t--------G~~~~~-----i~-~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          228 --VT--------GKRLQT-----VK-LPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             --TT--------CCEEEE-----EE-CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             --CC--------ceEEEE-----EE-CCCCCceEEEEeCCCCCEEEEEcCC
Confidence              11        111111     01 1234799999997   599998654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.35  Score=54.34  Aligned_cols=158  Identities=8%  Similarity=0.025  Sum_probs=90.5

Q ss_pred             eeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC--CeEEEEecCCCcCCCeeEEEe
Q 012294          171 TAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD--KHLFVSFESGRRNSNSIMVYD  248 (466)
Q Consensus       171 ~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~--~~IYaGg~~g~~~l~sVE~YD  248 (466)
                      ..+.++++..+++.+.|+  .++     ++..+|..+.+-...-.....+-+++...  +.|++|..     ..+|..||
T Consensus        59 ~~V~~l~fspg~~L~S~s--~D~-----~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-----dg~V~lwd  126 (902)
T 2oaj_A           59 SAIKEMRFVKGIYLVVIN--AKD-----TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ-----NGSMIVYD  126 (902)
T ss_dssp             CCEEEEEEETTTEEEEEE--TTC-----EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET-----TSCEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEE--CcC-----eEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC-----CCcEEEEE
Confidence            346666677777666666  443     35556655443111000112223234332  24555665     35689999


Q ss_pred             cCCCCccccccc---c---ccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC---
Q 012294          249 INSLKPVNEIGQ---N---EIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE---  319 (466)
Q Consensus       249 p~t~~~~~~~~~---~---~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~---  319 (466)
                      ..+.+.. +...   +   ..+.+   ...+...+.|.+.++.++++|+.+      +.| +||.++++++-.+..+   
T Consensus       127 ~~~~~~~-~~~i~~~~~~~~~~~~---h~~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~  195 (902)
T 2oaj_A          127 IDRDQLS-SFKLDNLQKSSFFPAA---RLSPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPP  195 (902)
T ss_dssp             TTTTEEE-EEEECCHHHHHTCSSS---CCCCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCT
T ss_pred             CCCCccc-cceecccccccccccc---CCCCeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCC
Confidence            9883321 0000   0   00000   012345677777555666777643      479 9999999988777543   


Q ss_pred             ---------------cccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          320 ---------------VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       320 ---------------~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                                     ......+..++++. .+..|+.+|.|.+=|+++
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTT
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC
Confidence                           24466778888865 456788999999999976

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.73  E-value=0.0065  Score=61.01  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=55.2

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-cceeeEEeeCCeEEEEeecCCCCcccce
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-ATKLRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-~~k~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      .++.++.||+|..+     ..|.+||+.|       |+..      |+.-. +..-.-+..++.+|+++..      .+.
T Consensus         5 P~v~~~~v~~gs~d-----g~v~a~d~~t-------G~~~------W~~~~~~~~s~p~~~~g~~~v~~s~------dg~   60 (369)
T 2hz6_A            5 VTLPETLLFVSTLD-----GSLHAVSKRT-------GSIK------WTLKEDPVLQVPTHVEEPAFLPDPN------DGS   60 (369)
T ss_dssp             ---CTTEEEEEETT-----SEEEEEETTT-------CCEE------EEEECCCSCCCC-----CCEEECTT------TCC
T ss_pred             CeeeCCEEEEEcCC-----CEEEEEECCC-------CCEE------EEecCCCceecceEcCCCEEEEeCC------CCE
Confidence            46678899996543     4789999999       5533      65432 1111112246777887653      347


Q ss_pred             EEEEeCCCCeeeeEEcCCcccc--cceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          302 IKFWDIRSGNVAWEVKDEVDCF--SDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       302 Ve~yDprt~~~vW~~~~~~d~~--~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |.+||+++++.+|.+.-+....  +...+. .+..|| +|..+|.|+..|+++-+
T Consensus        61 l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~-~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           61 LYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILY-MGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             EEEC-----CCSEECSCCHHHHHTTCSCC------CC-CCEEEEEEEEECCC---
T ss_pred             EEEEECCCCceeeeeeccCccccccCceEe-cCCEEE-EEeCCCEEEEEECCCCc
Confidence            9999999999999986441111  111121 345666 67889999999998744

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.70  E-value=1.3  Score=41.05  Aligned_cols=226  Identities=9%  Similarity=0.123  Sum_probs=118.6

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCC
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINS  251 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t  251 (466)
                      ++.+|+...  .+     ..+..||+....-......      -....++++.  ++.||++...   ....|.+||+..
T Consensus        40 ~g~l~v~~~--~~-----~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~---~~~~i~~~d~~g  109 (286)
T 1q7f_A           40 QNDIIVADT--NN-----HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---PTHQIQIYNQYG  109 (286)
T ss_dssp             TCCEEEEEG--GG-----TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG---GGCEEEEECTTS
T ss_pred             CCCEEEEEC--CC-----CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC---CCCEEEEECCCC
Confidence            567888765  32     2355667664332222110      1233346663  6789994321   135789999654


Q ss_pred             CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC--Ccccccceeee
Q 012294          252 LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD--EVDCFSDVTVS  329 (466)
Q Consensus       252 ~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~--~~d~~~~~~v~  329 (466)
                       +.+..+....    .    ..+..+.+. -+|.||++...      .+.|.+||+. ++.++.+..  ......+++++
T Consensus       110 -~~~~~~~~~~----~----~~~~~i~~~-~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~  172 (286)
T 1q7f_A          110 -QFVRKFGATI----L----QHPRGVTVD-NKGRIIVVECK------VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVN  172 (286)
T ss_dssp             -CEEEEECTTT----C----SCEEEEEEC-TTSCEEEEETT------TTEEEEECTT-SCEEEEEECTTTCSSEEEEEEC
T ss_pred             -cEEEEecCcc----C----CCceEEEEe-CCCCEEEEECC------CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEEC
Confidence             2121111100    0    011222222 36779988652      3479999975 555666532  22233567777


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEEe--CC-eEEEeEeeeec
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCGK--GG-EIELWSEIVMG  405 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~--~~-~~~v~~~~~~~  405 (466)
                      +++. ||.....++.|++.|...    ..-..+.... .+.      .-..|+.. +|+||++-  ++ .|.+|..    
T Consensus       173 ~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~g-~~~------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~----  236 (286)
T 1q7f_A          173 DKQE-IFISDNRAHCVKVFNYEG----QYLRQIGGEG-ITN------YPIGVGINSNGEILIADNHNNFNLTIFTQ----  236 (286)
T ss_dssp             SSSE-EEEEEGGGTEEEEEETTC----CEEEEESCTT-TSC------SEEEEEECTTCCEEEEECSSSCEEEEECT----
T ss_pred             CCCC-EEEEECCCCEEEEEcCCC----CEEEEEccCC-ccC------CCcEEEECCCCCEEEEeCCCCEEEEEECC----
Confidence            7765 887777788888887532    1111122100 011      11234442 57899886  33 7999963    


Q ss_pred             CCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEeccCC
Q 012294          406 SRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       406 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~  463 (466)
                       +.    .     ..+ .+-..   .....+..+++.. .+|||+ ...+.|.||+...
T Consensus       237 -~g----~-----~~~-~~~~~---~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          237 -DG----Q-----LIS-ALESK---VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             -TS----C-----EEE-EEEES---SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             -CC----C-----EEE-EEccc---CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence             11    1     111 11111   1233577888863 379999 5568899998643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.43  E-value=0.19  Score=47.12  Aligned_cols=63  Identities=11%  Similarity=-0.043  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc--cccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          286 LLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD--CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       286 Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d--~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ++++++.      .++|.+||+.++++++++.-+..  ....+++++++..||..+..++.|++.|+.+.+
T Consensus         3 ~~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            3 YILAPAR------PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEET------TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEcCC------CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence            4555553      44899999999999888753321  346788999999999888888999999997744

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.41  E-value=0.21  Score=52.74  Aligned_cols=151  Identities=11%  Similarity=0.049  Sum_probs=91.4

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeec--cccCCCCCeE
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL--RKLGDSSEWI  360 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl--r~~~~~~~W~  360 (466)
                      ++.+||++..      .++|.+||..+++++.++..... ...+++++++..||. +..++.|.+.|+  .++.      
T Consensus       148 ~~~~~vs~~~------d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v-~~~d~~V~v~D~~~~t~~------  213 (543)
T 1nir_A          148 PNLFSVTLRD------AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLV-IGRDARIDMIDLWAKEPT------  213 (543)
T ss_dssp             GGEEEEEEGG------GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEE-EETTSEEEEEETTSSSCE------
T ss_pred             CCEEEEEEcC------CCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEE-ECCCCeEEEEECcCCCCc------
Confidence            6789998874      34899999999999988763322 346779999999994 556699999999  4432      


Q ss_pred             EeccCCccccccccccceeEEEEE------CCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccce-eeccccCccccC
Q 012294          361 CLGDGRKMVNGKRKEGFGCKIECH------ANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERV-FRKNLMGRVTDM  431 (466)
Q Consensus       361 ~~~~~~~~m~~~~~~~~~~~~~~~------~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~  431 (466)
                      ++..    ...  .. .-..++..      +..||++-  ++.|.||..-    ..     ..-..+ .+.+.++..+-.
T Consensus       214 ~~~~----i~~--g~-~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~----t~-----~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          214 KVAE----IKI--GI-EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE----TL-----EPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             EEEE----EEC--CS-EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT----TC-----CEEEEEECCEECSSSCCEE
T ss_pred             EEEE----Eec--CC-CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc----cc-----ccceeecccCcccCccccc
Confidence            1222    111  01 11234443      45677774  6889999531    11     011111 011111111111


Q ss_pred             CCCceEEEeee--cceeEEEeeccceEEEeccCC
Q 012294          432 GGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       432 ~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ....+..+.+-  |.+++++-++...|-||+...
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            22357777665  678889988888899998653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.38  E-value=2.5  Score=42.20  Aligned_cols=108  Identities=7%  Similarity=-0.030  Sum_probs=61.5

Q ss_pred             ceeeeeCCCCceeecCCCCCceeEEEEECC--eEEEEe-cCCC----cCCCeeEEEecCCCCccccccccccccCCceee
Q 012294          199 LENGYVKETLNWENVTRSSSTVQAIGSSDK--HLFVSF-ESGR----RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA  271 (466)
Q Consensus       199 svE~ydp~t~~W~~va~Mr~~~~Ava~l~~--~IYaGg-~~g~----~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~  271 (466)
                      .+..||+.+.+=...-+.....+ +++..+  .+|+.. ...+    ...++|.+||+.|++++.++....  .......
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p~-i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLPN-PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--APRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCCC-eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--ccccccC
Confidence            67888988766321112212223 555533  699932 1111    125789999999988777664310  0000001


Q ss_pred             cCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294          272 IPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE  315 (466)
Q Consensus       272 ~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~  315 (466)
                      ..|-.+.+.+-+..||++.-.     ..++|-++| .+++++-+
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEEeE
Confidence            123345566677888888531     134688899 99988877

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.36  E-value=0.55  Score=50.67  Aligned_cols=74  Identities=15%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             eeCCeEEEEeecCCC---------CcccceEEEEeCCCCeeeeEEcCC-cc-----ccccee-ee---cCCC--ceEEEE
Q 012294          281 SSYNLLLASGSHSDI---------SKVTGNIKFWDIRSGNVAWEVKDE-VD-----CFSDVT-VS---DNLS--AIYKVG  339 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~g~---------~~~~~sVe~yDprt~~~vW~~~~~-~d-----~~~~~~-v~---~~~~--~i~~v~  339 (466)
                      +..|+||+..|...+         ..+.++|-.+|++|++++|+.... .|     ..+... ++   .++.  .++.++
T Consensus       250 ~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~  329 (599)
T 1w6s_A          250 PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP  329 (599)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEE
Confidence            357899998775321         224568999999999999998643 11     111222 22   2342  455567


Q ss_pred             EeeCceeEeeccccC
Q 012294          340 INSGEVSYMDLRKLG  354 (466)
Q Consensus       340 ~~~g~l~~~dlr~~~  354 (466)
                      .++|.||++|.++-+
T Consensus       330 ~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          330 DRNGIVYTLDRTDGA  344 (599)
T ss_dssp             CTTSEEEEEETTTCC
T ss_pred             CCCcEEEEEECCCCC
Confidence            799999999998743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.35  E-value=1.3  Score=43.08  Aligned_cols=55  Identities=11%  Similarity=0.094  Sum_probs=43.4

Q ss_pred             cceEEEEeCCCCe----------------eeeEEcCCcccccceeeecCCCceEEEEEeeCc-eeEeeccccC
Q 012294          299 TGNIKFWDIRSGN----------------VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGE-VSYMDLRKLG  354 (466)
Q Consensus       299 ~~sVe~yDprt~~----------------~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~-l~~~dlr~~~  354 (466)
                      .+.|.+||.++++                ++-...+|.+.+..++.++++.. +..|+.+|. +.+-|+++.+
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCSEEEEEETTTCC
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCCEEEEEECCCCc
Confidence            4579999999876                36778888888889999998765 458889998 9999998744

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.94  E-value=1.7  Score=42.91  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEE
Q 012294          227 DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW  305 (466)
Q Consensus       227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~y  305 (466)
                      ++++.| |++     .++|-.||..+.+++..+     +++..    +.+.+.|.+.+..++++|+.|      ++|.+|
T Consensus       155 d~~~las~s~-----D~tv~~Wd~~~~~~~~~~-----~~~~~----~v~~v~~~p~~~~~l~~~~~d------~~v~~w  214 (393)
T 4gq1_A          155 AEQVIASVGD-----DCTLIIWRLTDEGPILAG-----YPLSS----PGISVQFRPSNPNQLIVGERN------GNIRIF  214 (393)
T ss_dssp             EEEEEEEEET-----TSEEEEEEEETTEEEEEE-----EECSS----CEEEEEEETTEEEEEEEEETT------SEEEEE
T ss_pred             CCCEEEEEEC-----CCeEEEEECCCCceeeee-----cCCCC----CcEEEEECCCCCceEEecCCC------CEEEEE
Confidence            677888 666     468999999872222111     11111    234677887676788888854      489999


Q ss_pred             eCCCCeeeeEEcCC-------------------------cccccceeee-cCCCceEEEEEeeCceeEeecccc
Q 012294          306 DIRSGNVAWEVKDE-------------------------VDCFSDVTVS-DNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       306 Dprt~~~vW~~~~~-------------------------~d~~~~~~v~-~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      |.++++...+...+                         .+....+... +++..|+ .+..++.+.+-|++.-
T Consensus       215 d~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~-s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          215 DWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL-AMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             ETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE-EECTTSEEEEEEC---
T ss_pred             ECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE-EEeCCCCEEEEECccC
Confidence            99998765444321                         2222233333 4555544 5668888888888764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.88  E-value=0.69  Score=43.96  Aligned_cols=201  Identities=11%  Similarity=0.069  Sum_probs=103.3

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      -++.||+++.  .++     .+-.||+.+.+....... .....+++.. ++.||++..........|-+||+.+.+...
T Consensus        54 ~~g~l~~~~~--~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           54 RQGQLFLLDV--FEG-----NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             TTSCEEEEET--TTC-----EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCCCEEEEEC--CCC-----EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            4678888876  432     356778887776654311 2234445554 568998432111113579999998832210


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceE
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      .+..      .. ....+..+.+- -+|.||++...+......+.|-+||+.++++.- ..........+++++++..||
T Consensus       127 ~~~~------~~-~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          127 IIED------LS-TAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             EECS------SS-SCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred             EEcc------Cc-cCCcccceEEC-CCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence            0000      00 00011112222 367788866432111123468889998876332 111112234567788988899


Q ss_pred             EEEEeeCceeEeeccccCCCCCeEEeccCCc-cccccccccceeEEEEE-CCEEEEEe--CCeEEEeE
Q 012294          337 KVGINSGEVSYMDLRKLGDSSEWICLGDGRK-MVNGKRKEGFGCKIECH-ANQVFCGK--GGEIELWS  400 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~-~m~~~~~~~~~~~~~~~-~~~lf~~~--~~~~~v~~  400 (466)
                      .....++.|+..|++.-+.  ....+..+.. ...   ....-..|+.- +|+||++.  ++.|.+|.
T Consensus       198 v~~~~~~~i~~~d~~~~g~--~~~~~~~~~~~~~~---~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDGV--TIQPFGATIPYYFT---GHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSS--SEEEEEEEEEEECC---SSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEeCCCCeEEEEEecCCCc--CcccccceEEEecC---CCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence            7776788999999865221  1111111000 001   00011123333 47888886  56788885

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.79  E-value=2.1  Score=40.16  Aligned_cols=161  Identities=11%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             cCCcEEEEc-CCceeeEe------cCCCCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCC-Ccee
Q 012294          141 NYGTLHVSH-GSKITSFD------WSMRKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKET-LNWE  211 (466)
Q Consensus       141 ~~g~lyva~-GG~ve~YD------W~~a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t-~~W~  211 (466)
                      .++.||++. +|.+.+||      |...      .....+.++..- ++.||+ |.  .+       +-+||+.. ..|.
T Consensus        29 ~~g~l~v~t~~~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~g~l~v-~t--~~-------l~~~d~~g~~~~~   92 (330)
T 3hxj_A           29 KNGTIYLGSSNKNLYAINTDGSVKWFFK------SGEIIECRPSIGKDGTIYF-GS--DK-------VYAINPDGTEKWR   92 (330)
T ss_dssp             TTSCEECSSTTTTTEEECTTSCEEESSC------GGGEEEECCEETTTTEECC-SS--CE-------EEEECCCGGGGGG
T ss_pred             cCCeEEEEcCCCEEEEECCCCcEEEEEe------cCCCcccceEEecCCcEEE-ec--Cc-------EEEECCCCcEEEE
Confidence            478888543 34566777      5431      111112222223 556655 33  21       55666632 2465


Q ss_pred             ecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce---eeEEeeCCeEEE
Q 012294          212 NVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK---LRWVSSYNLLLA  288 (466)
Q Consensus       212 ~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k---~~~~~~~~~Lyv  288 (466)
                      ...+-..... .++.++.||+|..     ...+-+||+.. +             ..|..-....   .....-++.||+
T Consensus        93 ~~~~~~~~~~-~~~~~~~l~v~t~-----~~~l~~~d~~g-~-------------~~~~~~~~~~~~~~~~~~~~g~l~v  152 (330)
T 3hxj_A           93 FDTKKAIVSD-FTIFEDILYVTSM-----DGHLYAINTDG-T-------------EKWRFKTKKAIYATPIVSEDGTIYV  152 (330)
T ss_dssp             SCC-----CC-EEEETTEEEEECT-----TSEEEEECTTS-C-------------EEEEEECSSCCCSCCEECTTSCEEE
T ss_pred             EECCCCcccC-ceEECCEEEEEec-----CCEEEEEcCCC-C-------------EEEEEcCCCceeeeeEEcCCCEEEE
Confidence            3322211111 3445999999543     24678898872 1             1122211110   011223777887


Q ss_pred             EeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294          289 SGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       289 ~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                      .+.       .+.+.+||+. ++.+|+...+......+.++.++ .||. +.  +.|+..|
T Consensus       153 gt~-------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d  201 (330)
T 3hxj_A          153 GSN-------DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIYF-GS--DKVYAIN  201 (330)
T ss_dssp             ECT-------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC
T ss_pred             EcC-------CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC
Confidence            542       2469999999 99999997665555666555554 4664 33  8888888

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.78  E-value=2.9  Score=44.57  Aligned_cols=219  Identities=12%  Similarity=0.089  Sum_probs=118.7

Q ss_pred             ceeeeeCCCCceeecCCCCCceeEEEEEC--CeEEEEecCCCcCCCeeEEEecC--CCCccccccccccccCCceeecCc
Q 012294          199 LENGYVKETLNWENVTRSSSTVQAIGSSD--KHLFVSFESGRRNSNSIMVYDIN--SLKPVNEIGQNEIYGTDIESAIPA  274 (466)
Q Consensus       199 svE~ydp~t~~W~~va~Mr~~~~Ava~l~--~~IYaGg~~g~~~l~sVE~YDp~--t~~~~~~~~~~~~~~~~~w~~~~~  274 (466)
                      ++..+|+.+.+-...-+.......+++..  .++|+++.     .+.|-+||+.  |.+.+.++....          .|
T Consensus       178 ~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-----dg~V~viD~~~~t~~~v~~i~~G~----------~P  242 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-----DGKVNMIDLWMKEPTTVAEIKIGS----------EA  242 (567)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCCEEEEEECCS----------EE
T ss_pred             eEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-----CCeEEEEECCCCCCcEeEEEecCC----------CC
Confidence            45666777664322112211222255543  36899543     3589999996  755554443211          12


Q ss_pred             ceeeEE----eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC---cc--------cccceeeecCCCceEEEE
Q 012294          275 TKLRWV----SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE---VD--------CFSDVTVSDNLSAIYKVG  339 (466)
Q Consensus       275 ~k~~~~----~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~---~d--------~~~~~~v~~~~~~i~~v~  339 (466)
                      ..+.+.    +-+..|||+.-.      .++|-++|..|.+++.+..-.   .|        +.+.+.++.++.. |.|.
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~-~vv~  315 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVN  315 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEE
T ss_pred             ceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE-EEEE
Confidence            223333    134578887763      347899999999999876422   11        3345555666544 4454


Q ss_pred             E-eeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCc
Q 012294          340 I-NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGK--GGEIELWSEIVMGSRKSREGGPL  415 (466)
Q Consensus       340 ~-~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~  415 (466)
                      . ..|.|.++|......    ..+..    +..  .+. .+..+..-+..+|++-  .+.|.|+.--             
T Consensus       316 ~~~~g~v~~vd~~~~~~----~~v~~----i~~--~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-------------  372 (567)
T 1qks_A          316 VKETGKILLVDYTDLNN----LKTTE----ISA--ERFLHDGGLDGSHRYFITAANARNKLVVIDTK-------------  372 (567)
T ss_dssp             ETTTTEEEEEETTCSSE----EEEEE----EEC--CSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-------------
T ss_pred             ecCCCeEEEEecCCCcc----ceeee----eec--cccccCceECCCCCEEEEEeCCCCeEEEEECC-------------
Confidence            4 568999998876431    11111    110  000 1222333345666663  4667775321             


Q ss_pred             ccceeecccc-CccccCCCCceEEEeeecceeEEEee-ccceEEEeccCC
Q 012294          416 EERVFRKNLM-GRVTDMGGSKITNLSFGGNKMFVTRK-GQQTVEVWQSSS  463 (466)
Q Consensus       416 ~~~~~r~~~~-~~~~~~~~~~i~~~~~gg~r~f~~~~-~~~~~~vw~~~~  463 (466)
                      +.++-..--+ |+.++..+|.. -+.-.|.++|++-+ ..+.|-|+.+.+
T Consensus       373 t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          373 EGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            1223334457 77788777743 13334678888754 557899998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.72  E-value=1.9  Score=40.35  Aligned_cols=217  Identities=10%  Similarity=0.048  Sum_probs=113.0

Q ss_pred             CCc-EEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          180 SPG-VAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       180 ~~~-lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      ++. ||+++.  .++     .+-.||+.+. ............+++.. ++.||++...    ...|.+||+.+      
T Consensus        38 ~g~~l~~~~~--~~~-----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~----~~~i~~~d~~~------   99 (296)
T 3e5z_A           38 ARSAVIFSDV--RQN-----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHG----LRRLERQREPG------   99 (296)
T ss_dssp             GGTEEEEEEG--GGT-----EEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETT----TTEEEEECSTT------
T ss_pred             CCCEEEEEeC--CCC-----EEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecC----CCeEEEEcCCC------
Confidence            344 788876  332     3567777776 44332221223335553 5789984331    35799999987      


Q ss_pred             ccccccc-cC-CceeecCcceeeEEeeCCeEEEE----eecC------CCCc-ccceEEEEeCCCCeeeeEEcCCccccc
Q 012294          258 IGQNEIY-GT-DIESAIPATKLRWVSSYNLLLAS----GSHS------DISK-VTGNIKFWDIRSGNVAWEVKDEVDCFS  324 (466)
Q Consensus       258 ~~~~~~~-~~-~~w~~~~~~k~~~~~~~~~Lyv~----Gg~~------g~~~-~~~sVe~yDprt~~~vW~~~~~~d~~~  324 (466)
                       ++.+.+ .. ..-....+..+.+- -+|.||++    |..+      +... ..+.|-+||+. +++. ........-.
T Consensus       100 -g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~  175 (296)
T 3e5z_A          100 -GEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRVKPN  175 (296)
T ss_dssp             -CCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCSSEE
T ss_pred             -CcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCCCCc
Confidence             322211 00 00000011122232 47788887    3311      0000 12468889987 5532 2223332335


Q ss_pred             ceeeecCCCceEEEEEeeCceeEeeccccCCCCCe----EEeccCCccccccccccceeEEEE-ECCEEEEEeCCeEEEe
Q 012294          325 DVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW----ICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCGKGGEIELW  399 (466)
Q Consensus       325 ~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W----~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~~~~~~~v~  399 (466)
                      .+++++++..| .....++.|+..|+..-+   ..    ..+ ..  ...  .+.    .|+. -+|+||++.++.|.+|
T Consensus       176 gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g---~~~~~~~~~-~~--~~~--~p~----~i~~d~~G~l~v~~~~~v~~~  242 (296)
T 3e5z_A          176 GLAFLPSGNLL-VSDTGDNATHRYCLNARG---ETEYQGVHF-TV--EPG--KTD----GLRVDAGGLIWASAGDGVHVL  242 (296)
T ss_dssp             EEEECTTSCEE-EEETTTTEEEEEEECSSS---CEEEEEEEE-CC--SSS--CCC----SEEEBTTSCEEEEETTEEEEE
T ss_pred             cEEECCCCCEE-EEeCCCCeEEEEEECCCC---cCcCCCeEe-eC--CCC--CCC----eEEECCCCCEEEEcCCeEEEE
Confidence            67788888886 555577889999887322   11    011 10  000  122    2333 3678999988899888


Q ss_pred             EeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec---ceeEEEeec
Q 012294          400 SEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG---NKMFVTRKG  452 (466)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~  452 (466)
                      ..-     .    . +-.. ++         ...+ +++++||+   ++||++-.+
T Consensus       243 ~~~-----g----~-~~~~-~~---------~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          243 TPD-----G----D-ELGR-VL---------TPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             CTT-----S----C-EEEE-EE---------CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             CCC-----C----C-EEEE-EE---------CCCC-ceeEEEECCCCCEEEEEcCC
Confidence            641     1    1 1111 12         1233 88888864   479998654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.69  E-value=0.59  Score=50.01  Aligned_cols=112  Identities=16%  Similarity=0.087  Sum_probs=67.6

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC--C-------CceeEEEEECCeEEEEecCCCcCCCeeEEE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS--S-------STVQAIGSSDKHLFVSFESGRRNSNSIMVY  247 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M--r-------~~~~Ava~l~~~IYaGg~~g~~~l~sVE~Y  247 (466)
                      .++.||+.+.  .++      +-++|..+.  .|+.-...  .       ...+ +++.+++||+|..     ...+.++
T Consensus        67 ~~g~vyv~~~--~~~------v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g-~a~~~~~v~~~t~-----dg~l~Al  132 (582)
T 1flg_A           67 SDGVIYVTAS--YSR------LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRG-AAIYGDKVFFGTL-----DASVVAL  132 (582)
T ss_dssp             ETTEEEEEET--TTE------EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCC-CEEETTEEEEEET-----TTEEEEE
T ss_pred             ECCEEEEEcC--CCC------EEEEECCCCcEEEEEcCCCCcccccccccCCCc-cEEECCEEEEEeC-----CCEEEEE
Confidence            7899998876  432      445666543  47654432  1       0123 5678999999654     3568999


Q ss_pred             ecCCCCccccccccccccCCceeecCcc-------eeeEEeeCC------eEEEEeecCCCCcccceEEEEeCCCCeeee
Q 012294          248 DINSLKPVNEIGQNEIYGTDIESAIPAT-------KLRWVSSYN------LLLASGSHSDISKVTGNIKFWDIRSGNVAW  314 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k~~~~~~~~------~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW  314 (466)
                      |+.|       |+..      |+.-...       .-.-+..++      +||+... .+..+..+.|..||++|++++|
T Consensus       133 D~~T-------G~~~------W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~-~~e~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          133 NKNT-------GKVV------WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSS-GDEFGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             ESSS-------CCEE------EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCB-CGGGCCBCEEEEECTTTCCEEE
T ss_pred             ECCC-------CCEE------eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEecc-ccccCCCCEEEEEECCCCCEEe
Confidence            9999       5432      5532211       001112455      7776332 1212346789999999999999


Q ss_pred             EEcC
Q 012294          315 EVKD  318 (466)
Q Consensus       315 ~~~~  318 (466)
                      +...
T Consensus       199 ~~~~  202 (582)
T 1flg_A          199 MRPF  202 (582)
T ss_dssp             EEES
T ss_pred             ecCC
Confidence            8753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=94.46  E-value=0.34  Score=54.45  Aligned_cols=145  Identities=10%  Similarity=0.045  Sum_probs=87.0

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECCe-EEEEecCCCcCCCeeEEEecCCCCccccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKH-LFVSFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      ++.+.|+|+  .+|.     +..||..+.+-.....-...+.+++...+. |+.++.     .++|..||..+-+.+..+
T Consensus        28 dg~~lAsgs--~Dg~-----I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~-----D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           28 TQNLLAIAT--VTGE-----VHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINA-----KDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             TTTEEEEEE--TTSE-----EEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEET-----TCEEEEEETTTCSEEEEE
T ss_pred             CCCEEEEEe--CCCE-----EEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEEC-----cCeEEEEECCCCcEEEEE
Confidence            467888888  6653     334544433211110002334446767676 443554     468999999985444444


Q ss_pred             cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-------e----EEcCCccccccee
Q 012294          259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-------W----EVKDEVDCFSDVT  327 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-------W----~~~~~~d~~~~~~  327 (466)
                      .+      ..    ....+.+.+ ++..+++|+.|      ++|.+||.+++++.       |    ...+|......++
T Consensus        96 ~~------~~----~V~~v~~sp-~g~~l~sgs~d------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           96 FV------PG----KITSIDTDA-SLDWMLIGLQN------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             EC------SS----CEEEEECCT-TCSEEEEEETT------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             cC------CC----CEEEEEECC-CCCEEEEEcCC------CcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            32      11    122333443 44555666644      47999999999864       1    1234555667888


Q ss_pred             eecCCCceEEEEEeeCceeEeeccccC
Q 012294          328 VSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       328 v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++++..++.+|..+|.+ +-|++...
T Consensus       159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~  184 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTL-TYSLVENE  184 (902)
T ss_dssp             EETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred             EccCCCCEEEEEeCCCcE-EEECCCCc
Confidence            888776677788999999 99998743

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.33  E-value=1.3  Score=41.68  Aligned_cols=169  Identities=11%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCC-CCceeecCCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKE-TLNWENVTRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~-t~~W~~va~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      .++.||+...   ++     .+-+||+. ...|....+...... ++.. ++.||+|..     ...+-+||+.. +.+ 
T Consensus       106 ~~~~l~v~t~---~~-----~l~~~d~~g~~~~~~~~~~~~~~~-~~~~~~g~l~vgt~-----~~~l~~~d~~g-~~~-  169 (330)
T 3hxj_A          106 FEDILYVTSM---DG-----HLYAINTDGTEKWRFKTKKAIYAT-PIVSEDGTIYVGSN-----DNYLYAINPDG-TEK-  169 (330)
T ss_dssp             ETTEEEEECT---TS-----EEEEECTTSCEEEEEECSSCCCSC-CEECTTSCEEEECT-----TSEEEEECTTS-CEE-
T ss_pred             ECCEEEEEec---CC-----EEEEEcCCCCEEEEEcCCCceeee-eEEcCCCEEEEEcC-----CCEEEEECCCC-CEe-
Confidence            4777776432   22     24456665 446765443311111 3444 778999543     35788899873 211 


Q ss_pred             cccccccccCCceeecCcc---eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC
Q 012294          257 EIGQNEIYGTDIESAIPAT---KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS  333 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~---k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~  333 (466)
                                  |..-...   .......++.||+.+         +.+.+|| .+++..|+...+......+.++.++ 
T Consensus       170 ------------~~~~~~~~~~~~~~~d~~g~l~v~t---------~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-  226 (330)
T 3hxj_A          170 ------------WRFKTNDAITSAASIGKDGTIYFGS---------DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-  226 (330)
T ss_dssp             ------------EEEECSSCCCSCCEECTTCCEEEES---------SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-
T ss_pred             ------------EEEecCCCceeeeEEcCCCEEEEEe---------CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-
Confidence                        2211100   001122478888866         2488999 7888899987665555666666554 


Q ss_pred             ceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEEeCC-eEEEeE
Q 012294          334 AIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCGKGG-EIELWS  400 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~~~-~~~v~~  400 (466)
                      .|| ++..+|.|+..|. . + .-.|..-.. .         .....++.. +|.||++..+ .|..+.
T Consensus       227 ~l~-v~t~~~gl~~~~~-~-g-~~~~~~~~~-~---------~~~~~~~~~~~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          227 TIY-VTSLDGHLYAINP-D-G-TEKWRFKTG-K---------RIESSPVIGNTDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CEE-EEETTTEEEEECT-T-S-CEEEEEECS-S---------CCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred             eEE-EEcCCCeEEEECC-C-C-CEeEEeeCC-C---------CccccceEcCCCeEEEecCCCCEEEEC
Confidence            566 5666788877763 1 2 223443211 0         111123333 7888888655 777764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.17  E-value=0.7  Score=49.83  Aligned_cols=115  Identities=9%  Similarity=0.185  Sum_probs=69.2

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeC-CCC--ceeecCCCC--------C--ceeEEEE--ECCe----EEEEecCCCc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVK-ETL--NWENVTRSS--------S--TVQAIGS--SDKH----LFVSFESGRR  239 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp-~t~--~W~~va~Mr--------~--~~~Ava~--l~~~----IYaGg~~g~~  239 (466)
                      .++.||+.+.  +++     .+-++|. .+.  .|+.-....        +  ...++++  .+++    ||++..    
T Consensus        61 ~~g~vyv~~~--~~~-----~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----  129 (599)
T 1w6s_A           61 VDGKMYIHTS--FPN-----NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----  129 (599)
T ss_dssp             ETTEEEEECS--TTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----
T ss_pred             ECCEEEEEeC--CCC-----EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----
Confidence            7889998865  333     3455666 433  576544320        0  0112566  6888    999543    


Q ss_pred             CCCeeEEEecCCCCccccccccccccCCceeecCcc-------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee
Q 012294          240 NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV  312 (466)
Q Consensus       240 ~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~  312 (466)
                       ...+.++|..|       |+.      .|+.-...       .-.-+..++.||+.++. +..+..+.|..||++|++.
T Consensus       130 -dg~l~AlDa~T-------G~~------~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g-~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          130 -DGNVAALNAET-------GET------VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSG-AELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             -TSEEEEEETTT-------CCE------EEEEECCCGGGTCBCCSCCEEETTEEEECCBC-GGGTCCCEEEEEETTTCCE
T ss_pred             -CCEEEEEECCC-------CCE------EEeecCCCCCccceeecCCEEECCEEEEEecc-cccCCCCeEEEEECCCCcE
Confidence             34688999999       553      36532211       01112368888875431 1122467899999999999


Q ss_pred             eeEEcCC
Q 012294          313 AWEVKDE  319 (466)
Q Consensus       313 vW~~~~~  319 (466)
                      +|++...
T Consensus       195 ~W~~~~~  201 (599)
T 1w6s_A          195 VWRAYAT  201 (599)
T ss_dssp             EEEEESS
T ss_pred             EEEEcCC
Confidence            9998643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=94.04  E-value=0.21  Score=49.53  Aligned_cols=114  Identities=11%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             CeEEE--EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC--C-cccceE
Q 012294          228 KHLFV--SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI--S-KVTGNI  302 (466)
Q Consensus       228 ~~IYa--Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~--~-~~~~sV  302 (466)
                      ..+|+  .+.+.. ..+.|.+||+.|.+.+..+...          ..| .+.+.+-+..||++.-....  . ...++|
T Consensus        16 ~~~yv~~~~~~~~-~d~~v~v~D~~t~~~~~~i~~g----------~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v   83 (361)
T 2oiz_A           16 NRIYVMDSVFMHL-TESRVHVYDYTNGKFLGMVPTA----------FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVV   83 (361)
T ss_dssp             GEEEEEECCGGGG-GGCEEEEEETTTCCEEEEEECC----------EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred             CEEEEECCCCCcc-ccCeEEEEECCCCeEEEEecCC----------CCC-ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence            35777  322111 1568999999996554433220          013 44555667799998743211  0 124589


Q ss_pred             EEEeCCCCeeeeEEcCC------cccccceeeecCCCceEEEEEe-eCceeEeecccc
Q 012294          303 KFWDIRSGNVAWEVKDE------VDCFSDVTVSDNLSAIYKVGIN-SGEVSYMDLRKL  353 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~------~d~~~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~  353 (466)
                      ..||+.+.+++.+..-+      +..-..+++++++..||+..-. ++.|.+.|+.+.
T Consensus        84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~  141 (361)
T 2oiz_A           84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG  141 (361)
T ss_dssp             EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred             EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence            99999999988776422      2334678999999999976653 678999998653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=93.99  E-value=3.9  Score=37.98  Aligned_cols=225  Identities=13%  Similarity=0.109  Sum_probs=115.4

Q ss_pred             ceeeeeCCCCceeecCC-----CCCceeEEEEE-C-CeEEEEecCCCcCCCeeEEEecCCCCcccc-ccccccccCCcee
Q 012294          199 LENGYVKETLNWENVTR-----SSSTVQAIGSS-D-KHLFVSFESGRRNSNSIMVYDINSLKPVNE-IGQNEIYGTDIES  270 (466)
Q Consensus       199 svE~ydp~t~~W~~va~-----Mr~~~~Ava~l-~-~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~-~~~~~~~~~~~w~  270 (466)
                      .+-.||+.+.++.....     ......+++.. + +.||++..     .+.|.+||+. -+...- ... .    ..-.
T Consensus        47 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-----~~~l~~~d~~-g~~~~~~~~~-~----~~~~  115 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-----RLGLLVVQTD-GTFEEIAKKD-S----EGRR  115 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----TTEEEEEETT-SCEEECCSBC-T----TSCB
T ss_pred             EEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-----CCCEEEEeCC-CCEEEEEecc-C----CCcc
Confidence            35567777777654432     11122335554 4 68999433     2368899987 222111 110 0    0000


Q ss_pred             ecCcceeeEEeeCCeEEEEeecCC---------CCcccceEEEEeCCCCeeeeEEcCCcccccceeee----cCCCceEE
Q 012294          271 AIPATKLRWVSSYNLLLASGSHSD---------ISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVS----DNLSAIYK  337 (466)
Q Consensus       271 ~~~~~k~~~~~~~~~Lyv~Gg~~g---------~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~----~~~~~i~~  337 (466)
                      ...+..+.+. -+|.||++...++         .....+.|-+||+. +++.... .....-..++++    +++..||.
T Consensus       116 ~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v  192 (314)
T 1pjx_A          116 MQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIV  192 (314)
T ss_dssp             CBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEE
T ss_pred             ccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEE
Confidence            0012222222 3678888775331         00112468899987 6533221 111122456677    78888887


Q ss_pred             EEEeeCceeEeeccccCC---CCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEEEeEeeeecCCCCCC
Q 012294          338 VGINSGEVSYMDLRKLGD---SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIELWSEIVMGSRKSRE  411 (466)
Q Consensus       338 v~~~~g~l~~~dlr~~~~---~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~~~  411 (466)
                      ....++.|+..|+..-+.   ...+..+..        ...+.-..|+.. +|+||++  .++.|.+|..     +.   
T Consensus       193 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~--------~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~-----~~---  256 (314)
T 1pjx_A          193 AETPTKKLWSYDIKGPAKIENKKVWGHIPG--------THEGGADGMDFDEDNNLLVANWGSSHIEVFGP-----DG---  256 (314)
T ss_dssp             EETTTTEEEEEEEEETTEEEEEEEEEECCC--------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECT-----TC---
T ss_pred             EECCCCeEEEEECCCCCccccceEEEECCC--------CCCCCCCceEECCCCCEEEEEcCCCEEEEEcC-----CC---
Confidence            777788899988873221   001111111        000111123333 5889998  4677888853     11   


Q ss_pred             CCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEEEeccCCC
Q 012294          412 GGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       412 ~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~~~~~  464 (466)
                      |. +... +.         .....+..++++  |++||++-....+|-+|+...+
T Consensus       257 g~-~~~~-~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          257 GQ-PKMR-IR---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             BS-CSEE-EE---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             Cc-EeEE-Ee---------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            01 1111 11         122568888885  5569999877778888875543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=93.87  E-value=2.1  Score=38.62  Aligned_cols=187  Identities=11%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             EECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294          225 SSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       225 ~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                      .+.+..|.+..++  ....|..||+.+.+......+.          .....+.|.+ ++..+++++       .+.|.+
T Consensus         7 ~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~----------~~v~~~~~sp-dg~~l~~~~-------~~~i~~   66 (297)
T 2ojh_A            7 TLHTRLSTGPGGS--MRSSIEIFNIRTRKMRVVWQTP----------ELFEAPNWSP-DGKYLLLNS-------EGLLYR   66 (297)
T ss_dssp             -----------CC--CCEEEEEEETTTTEEEEEEEES----------SCCEEEEECT-TSSEEEEEE-------TTEEEE
T ss_pred             eeeeeEeecCCCC--cceeEEEEeCCCCceeeeccCC----------cceEeeEECC-CCCEEEEEc-------CCeEEE
Confidence            3445667632222  2578999999983322222211          1123345555 444444443       237999


Q ss_pred             EeCCC-CeeeeEEcCC-cccccceeeecCCCceEEEEE---eeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          305 WDIRS-GNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGI---NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       305 yDprt-~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~---~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      ||..+ ++..-....+ .....++..++++..|+..+.   ....|+..|+..-.    -..+....        ....+
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~--------~~~~~  134 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT----PRLMTKNL--------PSYWH  134 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC----CEECCSSS--------SEEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc----eEEeecCC--------Cccce
Confidence            99999 7755433333 356677889999988775542   24566666654322    12222210        00111


Q ss_pred             EEEEECCEEE-E-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccce
Q 012294          380 KIECHANQVF-C-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQT  455 (466)
Q Consensus       380 ~~~~~~~~lf-~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~  455 (466)
                      ...--+.+|+ + ..++.+.||.--.   +.    +. ...+     .     ...+.|..+.+  .|..|+++-.....
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~---~~----~~-~~~~-----~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~  196 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDI---DS----GV-ETRL-----T-----HGEGRNDGPDYSPDGRWIYFNSSRTGQ  196 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEET---TT----CC-EEEC-----C-----CSSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             EECCCCCEEEEEECCCCceEEEEEEC---CC----Cc-ceEc-----c-----cCCCccccceECCCCCEEEEEecCCCC
Confidence            1211234455 2 3577888886420   11    10 1111     1     12345666655  56777777655566


Q ss_pred             EEEecc
Q 012294          456 VEVWQS  461 (466)
Q Consensus       456 ~~vw~~  461 (466)
                      +.||.-
T Consensus       197 ~~i~~~  202 (297)
T 2ojh_A          197 MQIWRV  202 (297)
T ss_dssp             CEEEEE
T ss_pred             ccEEEE
Confidence            777763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.71  E-value=0.53  Score=49.62  Aligned_cols=152  Identities=8%  Similarity=0.072  Sum_probs=94.2

Q ss_pred             eeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEE--EE-CC-eEEE-EecCCCcCCC
Q 012294          171 TAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIG--SS-DK-HLFV-SFESGRRNSN  242 (466)
Q Consensus       171 ~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava--~l-~~-~IYa-Gg~~g~~~l~  242 (466)
                      ..+.++++..+...|.|+  .+|.     +-.||..+.. .....+   ...+.+++  .. ++ .++| |+.     ..
T Consensus       267 ~~v~sv~~s~~~~lasgs--~Dgt-----V~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----D~  333 (524)
T 2j04_B          267 SLITTFDFLSPTTVVCGF--KNGF-----VAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----DG  333 (524)
T ss_dssp             TCEEEEEESSSSEEEEEE--TTSE-----EEEEETTBCS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----TS
T ss_pred             CCEEEEEecCCCeEEEEe--CCCE-----EEEEECCCCC-CceEEeecccccEEEEEEEcCCCCCeEEEEecc-----CC
Confidence            456666676777888888  6663     4556655431 000001   22333342  22 24 6777 655     46


Q ss_pred             eeEEEecCCCCccccc-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294          243 SIMVYDINSLKPVNEI-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD  321 (466)
Q Consensus       243 sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d  321 (466)
                      +|-.||..+.+....+ ++..    .    .....+.|.+ ++..+|+|+.      .++|.+||.+++.++.++.+|.+
T Consensus       334 tvklWD~~~~~~~~~~~~~~~----~----~~v~~v~fsp-~~~~l~s~~~------d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          334 YFYIFNPKDIATTKTTVSRFR----G----SNLVPVVYCP-QIYSYIYSDG------ASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             EEEEECGGGHHHHCEEEEECS----C----CSCCCEEEET-TTTEEEEECS------SSEEEEEETTCTTCCEEEEECSS
T ss_pred             eEEEEECCCCCcccccccccc----c----CcccceEeCC-CcCeEEEeCC------CCcEEEEECcccccceeeecCCC
Confidence            7899999873332221 1111    0    0123456665 3445777763      34799999999998888888888


Q ss_pred             cccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      ....++.++++..|. .|+.+|.+.+-|+.
T Consensus       399 ~V~sva~Sp~g~~l~-Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          399 TITAIGVSRLHPMVL-AGSADGSLIITNAA  427 (524)
T ss_dssp             CEEEEECCSSCCBCE-EEETTTEEECCBSC
T ss_pred             ceEEEEeCCCCCeEE-EEECCCEEEEEech
Confidence            888999999988654 78899998777653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=93.32  E-value=3.7  Score=40.21  Aligned_cols=178  Identities=11%  Similarity=0.079  Sum_probs=100.1

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE--cC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV--KD  318 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~--~~  318 (466)
                      ..+|-.||+.+.+++.++.+..          ....+.|.+ ++.++++++       .+.+.+|+..+++.+-..  ..
T Consensus       156 d~~i~iwd~~~~~~~~~~~~~~----------~V~~v~fsp-dg~~l~s~s-------~~~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEIETRG----------EVKDLHFST-DGKVVAYIT-------GSSLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             SCEEEEEETTTTEEEEEEECSS----------CCCEEEECT-TSSEEEEEC-------SSCEEEEETTTCCEEEEECCCC
T ss_pred             CCEEEEeECCCCcEEEEeCCCC----------ceEEEEEcc-CCceEEecc-------ceeEEEEEeccCcceeeeecCC
Confidence            5689999999976666665422          123345554 566666665       235888998888765333  33


Q ss_pred             CcccccceeeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE-ECCEEEEE--
Q 012294          319 EVDCFSDVTVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCG--  391 (466)
Q Consensus       319 ~~d~~~~~~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~--  391 (466)
                      +...+..+..++++..|. .++.++    .+...|++...    +.....  +.... ....-. .++. -+|+++++  
T Consensus       218 ~~~~v~~v~fspdg~~l~-~~s~d~~~~~~i~~~~~~~~~----~~~~~~--~~~~~-~~~~V~-~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLI-AASLKKGKGIVLTKISIKSGN----TSVLRS--KQVTN-RFKGIT-SMDVDMKGELAVLAS  288 (365)
T ss_dssp             TTEEEEEEEEEETTEEEE-EEEESSSCCEEEEEEEEETTE----EEEEEE--EEEES-SCSCEE-EEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEE-EEecCCcceeEEeecccccce----ecceee--eeecC-CCCCeE-eEEECCCCCceEEEc
Confidence            466677788888887755 445444    34444444322    111110  00110 001011 1221 24565554  


Q ss_pred             eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccceEEEeccCC
Q 012294          392 KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       392 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~~~~vw~~~~  463 (466)
                      .++.|.||.--     .        -+..+.-+-     ...+.|+.++|== ++++++=..-+.|-||+-|.
T Consensus       289 ~D~~V~iwd~~-----~--------~~~~~~~~~-----gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNSIALVKLK-----D--------LSMSKIFKQ-----AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEETT-----T--------TEEEEEETT-----SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEECC-----C--------CcEEEEecC-----cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            66789999742     1        111121111     2356899999963 36778888889999999653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=93.14  E-value=0.36  Score=49.97  Aligned_cols=115  Identities=7%  Similarity=-0.047  Sum_probs=75.7

Q ss_pred             CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC--C-cccceEE
Q 012294          228 KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI--S-KVTGNIK  303 (466)
Q Consensus       228 ~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~--~-~~~~sVe  303 (466)
                      ..+|+ -...... .++|-++|+.|++.+.+|....          .| .+...+-+..|||+-...+.  . ...++|.
T Consensus        85 ~~vyV~n~~~~~~-~~~VsVID~~t~~vv~~I~vG~----------~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           85 RRVYIQDPAHFAA-ITQQFVIDGSTGRILGMTDGGF----------LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             TEEEEEECTTTCS-SEEEEEEETTTTEEEEEEEECS----------SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEECCCcCCC-CCeEEEEECCCCEEEEEEECCC----------CC-ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            45888 2211111 2799999999988777776522          13 44444567789988631100  0 0245899


Q ss_pred             EEeCCCCeeeeEEcCC-------cccccceeeecCCCceEEEEEe-eCceeEeeccccC
Q 012294          304 FWDIRSGNVAWEVKDE-------VDCFSDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLG  354 (466)
Q Consensus       304 ~yDprt~~~vW~~~~~-------~d~~~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~  354 (466)
                      ++|+.+++++.+..=+       +..-..+.+++|+..||+..-. ++.|.++|+.+..
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence            9999999998776321       1223468899999999966543 6789999998865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=92.94  E-value=0.74  Score=46.14  Aligned_cols=100  Identities=9%  Similarity=-0.101  Sum_probs=67.6

Q ss_pred             eeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC--C-cccceEEEEeCCCCeeeeEEcCC
Q 012294          243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI--S-KVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~--~-~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      +|.+||+.|.+.+.++....          .+ .+...+-+..||++.-..+.  . ...++|.+||+.+.+++-+..-+
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~----------~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~  116 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGF----------LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP  116 (373)
T ss_pred             EEEEEECCCCeEEEEecCCC----------CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC
Confidence            89999999977665554311          23 45566677899998642211  0 12468999999999887655321


Q ss_pred             -------cccccceeeecCCCceEEEEEe-eCceeEeeccccC
Q 012294          320 -------VDCFSDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLG  354 (466)
Q Consensus       320 -------~d~~~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~  354 (466)
                             ++.-..+.+++++..||...-. ++.|.+.| .+.+
T Consensus       117 ~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H          117 DAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             CccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence                   1112368899999999977654 68899999 6643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=92.46  E-value=6.5  Score=36.21  Aligned_cols=181  Identities=8%  Similarity=-0.023  Sum_probs=99.0

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecC--CCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT--RSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va--~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      ++.||+.-.  ..     ..+.++|+....-..+.  .+ ....++++.  ++.||+.-.    ..+.|.++|+..-   
T Consensus        47 ~~~ly~~d~--~~-----~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~----~~~~I~~~~~~g~---  111 (267)
T 1npe_A           47 DKVVYWTDI--SE-----PSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDS----QLDRIEVAKMDGT---  111 (267)
T ss_dssp             TTEEEEEET--TT-----TEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEET----TTTEEEEEETTSC---
T ss_pred             CCEEEEEEC--CC-----CEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEEC----CCCEEEEEEcCCC---
Confidence            467888754  22     24666777654322221  22 233346665  578999321    1468999998751   


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee-eeEEcCCcccccceeeecCCCc
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV-AWEVKDEVDCFSDVTVSDNLSA  334 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~-vW~~~~~~d~~~~~~v~~~~~~  334 (466)
                          ..+.+....  ...|..+...+-++.||++....    ..+.|.++++..... +.. ......-.++++++++..
T Consensus       112 ----~~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~-~~~~~~P~gia~d~~~~~  180 (267)
T 1npe_A          112 ----QRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQ  180 (267)
T ss_dssp             ----SCEEEECSS--CSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTE
T ss_pred             ----CEEEEEECC--CCCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEE-ECCCCCCcEEEEcCCCCE
Confidence                111110000  01123333434479999986421    134799998865431 111 112222356788888999


Q ss_pred             eEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC--CeEEEe
Q 012294          335 IYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG--GEIELW  399 (466)
Q Consensus       335 i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~--~~~~v~  399 (466)
                      ||.....++.|++.|+.....    ..+.+   ...  .|    ..|+..++.||++.-  +.|.++
T Consensus       181 lyv~d~~~~~I~~~~~~g~~~----~~~~~---~~~--~P----~gi~~d~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          181 LCWVDAGTHRAECLNPAQPGR----RKVLE---GLQ--YP----FAVTSYGKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             EEEEETTTTEEEEEETTEEEE----EEEEE---CCC--SE----EEEEEETTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCEEEEEecCCCce----EEEec---CCC--Cc----eEEEEeCCEEEEEECCCCeEEEE
Confidence            998888889999999864321    11111   011  12    246677999999854  455443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.34  E-value=9.8  Score=37.93  Aligned_cols=114  Identities=12%  Similarity=0.015  Sum_probs=67.2

Q ss_pred             EEEE-CCe-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc
Q 012294          223 IGSS-DKH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       223 va~l-~~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      ++.. +++ |+.+..++.  ...|-.||..+-+...-.++      ..    ......|.+-+..|+.++..+|.    .
T Consensus       184 ~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~------~~----~~~~~~~spdg~~la~~~~~~g~----~  247 (415)
T 2hqs_A          184 PAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASF------PR----HNGAPAFSPDGSKLAFALSKTGS----L  247 (415)
T ss_dssp             EEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC------SS----CEEEEEECTTSSEEEEEECTTSS----C
T ss_pred             eEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC------CC----cccCEEEcCCCCEEEEEEecCCC----c
Confidence            4544 344 444433221  36899999998322111111      11    12344566655566666665552    3


Q ss_pred             eEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeC--ceeEeecccc
Q 012294          301 NIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSG--EVSYMDLRKL  353 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g--~l~~~dlr~~  353 (466)
                      .|.+||.+++++ .....+......+..++++..|+..+..+|  .|+..|+...
T Consensus       248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            699999999885 344444445567788899998775554444  7888888763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.33  E-value=9.8  Score=37.92  Aligned_cols=97  Identities=15%  Similarity=0.092  Sum_probs=59.9

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      .+.|-.||...-.+..-.++      .    .....+.|.+ +|..++.++.++.   ...|.+||.+++++. ....+.
T Consensus       158 ~~~i~i~d~~g~~~~~l~~~------~----~~v~~~~~Sp-dg~~la~~s~~~~---~~~i~~~d~~tg~~~-~l~~~~  222 (415)
T 2hqs_A          158 PYELRVSDYDGYNQFVVHRS------P----QPLMSPAWSP-DGSKLAYVTFESG---RSALVIQTLANGAVR-QVASFP  222 (415)
T ss_dssp             CEEEEEEETTSCSCEEEEEE------S----SCEEEEEECT-TSSEEEEEECTTS---SCEEEEEETTTCCEE-EEECCS
T ss_pred             cceEEEEcCCCCCCEEEeCC------C----CcceeeEEcC-CCCEEEEEEecCC---CcEEEEEECCCCcEE-EeecCC
Confidence            36899999876111111111      1    1133455665 4444444444431   248999999999865 344444


Q ss_pred             ccccceeeecCCCceEEEEEeeCc--eeEeeccc
Q 012294          321 DCFSDVTVSDNLSAIYKVGINSGE--VSYMDLRK  352 (466)
Q Consensus       321 d~~~~~~v~~~~~~i~~v~~~~g~--l~~~dlr~  352 (466)
                      .....+..++++..|+..+..+|.  |++.|+++
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~  256 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  256 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCC
Confidence            455678899999988877776665  99999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=92.24  E-value=0.54  Score=48.08  Aligned_cols=117  Identities=8%  Similarity=-0.017  Sum_probs=75.9

Q ss_pred             CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCC--CCc-ccceEE
Q 012294          227 DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD--ISK-VTGNIK  303 (466)
Q Consensus       227 ~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g--~~~-~~~sVe  303 (466)
                      .+.+|+.-.......+.|.++|+.|++.+.+|..-.          .| .+...+-+..||++..+..  ..+ ..++|.
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~----------~P-~va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----------LP-NPVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----------SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC----------CC-cEEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            456899111001114699999999977777665421          12 2334455678999864211  111 245899


Q ss_pred             EEeCCCCeeeeEEcCC-------cccccceeeecCCCceEEEEEe-eCceeEeeccccC
Q 012294          304 FWDIRSGNVAWEVKDE-------VDCFSDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLG  354 (466)
Q Consensus       304 ~yDprt~~~vW~~~~~-------~d~~~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~  354 (466)
                      +||+.+++++-+..=+       +..-..+.+++|+..||+.... ++.|.++|+.+..
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~  171 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA  171 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence            9999999998776311       1122457899999999977653 7899999998765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.21  E-value=3  Score=45.01  Aligned_cols=149  Identities=8%  Similarity=0.120  Sum_probs=95.1

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee-------eeEE----cCCcccccceeeecCCCceEEEEEeeCc
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV-------AWEV----KDEVDCFSDVTVSDNLSAIYKVGINSGE  344 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~-------vW~~----~~~~d~~~~~~v~~~~~~i~~v~~~~g~  344 (466)
                      .+.|.+ +|.+.|+|+.||      +|.+||..++..       +-++    .+|.+.+-.++.++++   +.+++.++.
T Consensus       134 svafSP-DG~~LAsgs~DG------tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~t  203 (588)
T 2j04_A          134 CFEWNP-IESSIVVGNEDG------ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNS  203 (588)
T ss_dssp             EEEECS-SSSCEEEEETTS------EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCC
T ss_pred             EEEEcC-CCCEEEEEcCCC------EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCe
Confidence            345554 777778888544      899999999862       4554    5556677888899888   567888999


Q ss_pred             eeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccc
Q 012294          345 VSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNL  424 (466)
Q Consensus       345 l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~  424 (466)
                      +.+-|+..-.....|..+.+..        +..=..++.+++.|-++-++.|.+|.-.    ..       ....++.  
T Consensus       204 VrlWd~~~~~~~~~~~tL~~~h--------~~~V~svaFsg~~LASa~~~tIkLWd~~----~~-------~~~~~~~--  262 (588)
T 2j04_A          204 VFSMTVSASSHQPVSRMIQNAS--------RRKITDLKIVDYKVVLTCPGYVHKIDLK----NY-------SISSLKT--  262 (588)
T ss_dssp             EEEECCCSSSSCCCEEEEECCC--------SSCCCCEEEETTEEEEECSSEEEEEETT----TT-------EEEEEEC--
T ss_pred             EEEEECCCCccccceeeecccc--------cCcEEEEEEECCEEEEEeCCeEEEEECC----CC-------eEEEEEc--
Confidence            9988886644111344453211        1122345555777777778899999853    11       1112221  


Q ss_pred             cCccccCCCCceEEEee--ecceeEEEeeccceEEEecc
Q 012294          425 MGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQS  461 (466)
Q Consensus       425 ~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~  461 (466)
                       |     ..+.|.++++  ..|..+++=..+.|..||..
T Consensus       263 -g-----h~~~V~~va~~~s~d~~~La~a~edG~klw~~  295 (588)
T 2j04_A          263 -G-----SLENFHIIPLNHEKESTILLMSNKTSYKVLLE  295 (588)
T ss_dssp             -S-----CCSCCCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred             -C-----CCceEEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence             1     4567888999  77765555555555589974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.14  E-value=6.1  Score=42.59  Aligned_cols=136  Identities=12%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCc--------eeec-CCC---CCceeEEEEECCeEEE-EecCCCcCCCeeE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLN--------WENV-TRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIM  245 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--------W~~v-a~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE  245 (466)
                      -+++..|+||  .+|.     +..||..+..        ...+ ..+   ...+-.++...+. .| ++.     .++|-
T Consensus       139 PDG~~LAsgs--~DGt-----VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~-----D~tVr  205 (588)
T 2j04_A          139 PIESSIVVGN--EDGE-----LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS-----NNSVF  205 (588)
T ss_dssp             SSSSCEEEEE--TTSE-----EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET-----TCCEE
T ss_pred             CCCCEEEEEc--CCCE-----EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC-----CCeEE
Confidence            6788999999  6663     5566655542        1111 001   1234447778777 55 544     47899


Q ss_pred             EEecCCCCcc---ccc--cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee-eeEEcCC
Q 012294          246 VYDINSLKPV---NEI--GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV-AWEVKDE  319 (466)
Q Consensus       246 ~YDp~t~~~~---~~~--~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~-vW~~~~~  319 (466)
                      .||..+.+..   .++  +++.          ....+.|.  + ...|+++ +      ++|.+||..+++. +... +|
T Consensus       206 lWd~~~~~~~~~~~tL~~~h~~----------~V~svaFs--g-~~LASa~-~------~tIkLWd~~~~~~~~~~~-gh  264 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNASRR----------KITDLKIV--D-YKVVLTC-P------GYVHKIDLKNYSISSLKT-GS  264 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCCSS----------CCCCEEEE--T-TEEEEEC-S------SEEEEEETTTTEEEEEEC-SC
T ss_pred             EEECCCCccccceeeecccccC----------cEEEEEEE--C-CEEEEEe-C------CeEEEEECCCCeEEEEEc-CC
Confidence            9999883311   122  1211          23445666  4 4455554 1      4899999999987 5555 68


Q ss_pred             cccccceee--ecCCCceEEEEEeeCc-eeEee
Q 012294          320 VDCFSDVTV--SDNLSAIYKVGINSGE-VSYMD  349 (466)
Q Consensus       320 ~d~~~~~~v--~~~~~~i~~v~~~~g~-l~~~d  349 (466)
                      .+.+.++++  ++++.. ..++..+|+ |+-.|
T Consensus       265 ~~~V~~va~~~s~d~~~-La~a~edG~klw~~d  296 (588)
T 2j04_A          265 LENFHIIPLNHEKESTI-LLMSNKTSYKVLLED  296 (588)
T ss_dssp             CSCCCEEEETTCSSCEE-EEECSSCEEEEEESS
T ss_pred             CceEEEEEeeeCCCCCE-EEEEcCCCCEEEeec
Confidence            888899999  877754 446666777 54443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.13  E-value=8.1  Score=36.53  Aligned_cols=145  Identities=12%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC-CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      .++++++|.  .++     .+-.+|+++.  .|+.-..- .....+...-+|.||+.+      .+.|.+||| +     
T Consensus         4 ~~~~lv~~~--~~~-----~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~------~~~V~~~d~-~-----   64 (276)
T 3no2_A            4 PQHLLVGGS--GWN-----KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY------SKGAKMITR-D-----   64 (276)
T ss_dssp             CCEEEEECT--TCS-----EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC------BSEEEEECT-T-----
T ss_pred             CCcEEEeeC--CCC-----EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC------CCCEEEECC-C-----
Confidence            456666666  332     3345566544  47654321 011221233467888832      356999999 7     


Q ss_pred             cccccccccCCceeecCcc-----eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc------ccccc
Q 012294          257 EIGQNEIYGTDIESAIPAT-----KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV------DCFSD  325 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~-----k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~------d~~~~  325 (466)
                        |+      -.|+.-.+.     ..+.+ .+|.++++...     ..+.|-.+|+ +++.+|++.-..      ...-.
T Consensus        65 --G~------~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~-----~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           65 --GR------ELWNIAAPAGCEMQTARIL-PDGNALVAWCG-----HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             --SC------EEEEEECCTTCEEEEEEEC-TTSCEEEEEES-----TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             --CC------EEEEEcCCCCccccccEEC-CCCCEEEEecC-----CCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence              33      235544321     12233 45555555441     1336888898 889999985221      11223


Q ss_pred             eeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          326 VTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       326 ~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      +.+.+++..| .+...++.|+..|..  + .--|.+=
T Consensus       130 v~~~~~G~~l-v~~~~~~~v~~~d~~--G-~~~w~~~  162 (276)
T 3no2_A          130 INKNKKGNYL-VPLFATSEVREIAPN--G-QLLNSVK  162 (276)
T ss_dssp             CEECTTSCEE-EEETTTTEEEEECTT--S-CEEEEEE
T ss_pred             ceECCCCCEE-EEecCCCEEEEECCC--C-CEEEEEE
Confidence            4556666654 455578899988875  4 3456543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=91.93  E-value=4.7  Score=42.27  Aligned_cols=151  Identities=9%  Similarity=0.069  Sum_probs=86.3

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCccccccee--eecCCCceEEEEEeeCceeEeecc
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVT--VSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~--v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      ..+.|.. .+ ++++|+.|      ++|.+||.+++ .++.....|.+.+.+++  .++++..++.-|+.+|.+-+-|+|
T Consensus       270 ~sv~~s~-~~-~lasgs~D------gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          270 TTFDFLS-PT-TVVCGFKN------GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             EEEEESS-SS-EEEEEETT------SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             EEEEecC-CC-eEEEEeCC------CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            3455553 34 56777744      48999999987 34456777766666663  344544778899999999999999


Q ss_pred             ccCCCCCeEEeccCCccccccccccceeEEEEEC-CEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcc
Q 012294          352 KLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA-NQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRV  428 (466)
Q Consensus       352 ~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  428 (466)
                      +.....  +....    +    +.+.-..|+..- ++.|++  .++.|.+|.--     .   +. ..     +.+.+  
T Consensus       342 ~~~~~~--~~~~~----~----~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~-----~---~~-~~-----~~l~g--  395 (524)
T 2j04_B          342 DIATTK--TTVSR----F----RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR-----A---AF-AV-----HPLVS--  395 (524)
T ss_dssp             GHHHHC--EEEEE----C----SCCSCCCEEEETTTTEEEEECSSSEEEEEETT-----C---TT-CC-----EEEEE--
T ss_pred             CCCccc--ccccc----c----ccCcccceEeCCCcCeEEEeCCCCcEEEEECc-----c---cc-cc-----eeeec--
Confidence            854200  11111    0    000001244443 555665  44569999631     1   01 01     11222  


Q ss_pred             ccCCCCceEEEeeecc-eeEEEeeccceEEEeccC
Q 012294          429 TDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       429 ~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~  462 (466)
                         ..+.|..++|--| +++++=.+-..|-||+..
T Consensus       396 ---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          396 ---RETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             ---CSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             ---CCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence               3457888887632 344555666778888754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=91.90  E-value=1.3  Score=44.80  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             cceEEEEeCCCCeeeeEEcCCcccc-cceeeecCCCceEEEEEeeCceeEeec
Q 012294          299 TGNIKFWDIRSGNVAWEVKDEVDCF-SDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~~d~~-~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      .++|.+||.++++++=+..+|.+.. ..++.++++..|+ -|+.|+.+.+=|+
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            4489999999999998888775543 3478889988866 5668888776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=91.67  E-value=0.99  Score=46.64  Aligned_cols=77  Identities=9%  Similarity=-0.085  Sum_probs=57.3

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE---------eeCceeEeeccc
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI---------NSGEVSYMDLRK  352 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~---------~~g~l~~~dlr~  352 (466)
                      -.+.+||+-..++..  .++|-++|+.+++++++..-...+  .+.+++|+..||+...         .++.|.++|+.+
T Consensus        83 ~~~~vyV~n~~~~~~--~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           83 DARRVYIQDPAHFAA--ITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CTTEEEEEECTTTCS--SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCEEEEECCCcCCC--CCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            356799988633221  168999999999999988644434  8999999999997764         477899999998


Q ss_pred             cCCCCCeEEec
Q 012294          353 LGDSSEWICLG  363 (466)
Q Consensus       353 ~~~~~~W~~~~  363 (466)
                      ++- -..+.+.
T Consensus       159 ~~v-v~~I~v~  168 (426)
T 3c75_H          159 FLP-IADIELP  168 (426)
T ss_dssp             CCE-EEEEEET
T ss_pred             CcE-EEEEECC
Confidence            773 2234554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=91.44  E-value=10  Score=36.32  Aligned_cols=219  Identities=11%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEE-ECCeEEEEecCCCcCCCeeEEEecCCCCcccccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGS-SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~-l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      +.+|.++.  .++     .+-+||+.+.+..... ....+.+++. -++.+|++..      +.+-+||+.+       +
T Consensus        61 ~~l~~~d~--~~~-----~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~~------~gl~~~d~~~-------g  119 (326)
T 2ghs_A           61 GTAWWFNI--LER-----ELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIASD------DGLFLRDTAT-------G  119 (326)
T ss_dssp             TEEEEEEG--GGT-----EEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEET------TEEEEEETTT-------C
T ss_pred             CEEEEEEC--CCC-----EEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEEC------CCEEEEECCC-------C
Confidence            56777765  322     3556777766543221 1122333443 4678888432      3588999987       2


Q ss_pred             ccccc-cC-CceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEE
Q 012294          260 QNEIY-GT-DIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       260 ~~~~~-~~-~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~  337 (466)
                      +.+.+ .. ..-....+..+.+ .-+|.||+...........+.|-+||  ++++.. ..+....-..+++++++..||.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEE
Confidence            21111 00 0000000011122 23667787654221111234677788  565322 1111122245678889999998


Q ss_pred             EEEeeCceeEeecc--cc-CCCCC--eEEeccCCccccccccccceeEEEE-ECCEEEEEe--CCeEEEeEeeeecCCCC
Q 012294          338 VGINSGEVSYMDLR--KL-GDSSE--WICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCGK--GGEIELWSEIVMGSRKS  409 (466)
Q Consensus       338 v~~~~g~l~~~dlr--~~-~~~~~--W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~~--~~~~~v~~~~~~~~~~~  409 (466)
                      ....++.|+..|+.  .- .-.+.  +..+..         ..+.-..++. -+|.||++.  ++.|.+|+.     +. 
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-----~g-  260 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG---------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DG-  260 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTT---------SSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TC-
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCC---------CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-----CC-
Confidence            77777899999986  21 10111  111111         0111112333 257888886  577887752     11 


Q ss_pred             CCCCCcccceeeccccCccccCCCCceEEEeeec---ceeEEEeecc
Q 012294          410 REGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG---NKMFVTRKGQ  453 (466)
Q Consensus       410 ~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~~~~~  453 (466)
                          .    +.++ +    + .....|+.++|+|   ++|||+-...
T Consensus       261 ----~----~~~~-i----~-~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          261 ----N----HIAR-Y----E-VPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ----C----EEEE-E----E-CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             ----C----EEEE-E----E-CCCCCcEEEEEecCCCCEEEEEecCC
Confidence                1    1121 0    0 1234699999985   5899985543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=91.14  E-value=10  Score=36.08  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             EEeecCCCCcccceEEEE--eCCCCeeeeEEcCCcccccceeeecCCCceEEEEE---eeCceeEeeccccCCCCCeEEe
Q 012294          288 ASGSHSDISKVTGNIKFW--DIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI---NSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       288 v~Gg~~g~~~~~~sVe~y--Dprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~---~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      .+|.|.+..  ...|.+|  |+.+++.......+...-..+++++++..||.++.   .+|.+.+.++..-.  +....+
T Consensus        17 ~vg~y~~~~--~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~~~~   92 (361)
T 3scy_A           17 LVGTYTSGN--SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTLHLL   92 (361)
T ss_dssp             EEEECCSSS--CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT--TEEEEE
T ss_pred             EEEeccCCC--CCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcEEEe
Confidence            456654432  3345555  77888743222113334456789999999997766   34677666655421  222333


Q ss_pred             ccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccC---CCCceE
Q 012294          363 GDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDM---GGSKIT  437 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~i~  437 (466)
                      ..    ...  ....-+.++.-++.||++.  ++.|.||.--    ..    +.+.+....-...+..+..   ....+.
T Consensus        93 ~~----~~~--~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~----~~----g~~~~~~~~~~~~g~~~~~~~~~~~~~~  158 (361)
T 3scy_A           93 NT----QKT--MGADPCYLTTNGKNIVTANYSGGSITVFPIG----QD----GALLPASDVIEFKGSGPDKERQTMPHLH  158 (361)
T ss_dssp             EE----EEC--SSSCEEEEEECSSEEEEEETTTTEEEEEEBC----TT----SCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred             eE----ecc--CCCCcEEEEECCCEEEEEECCCCEEEEEEeC----CC----CcCcccceeEEccCCCCCccccCCCcce
Confidence            32    110  1113445566556688884  6789999742    11    1111111111112221111   122345


Q ss_pred             EEee--ecceeEEEeeccceEEEeccC
Q 012294          438 NLSF--GGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       438 ~~~~--gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      .+++  -|.+||++-...+.|.||...
T Consensus       159 ~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          159 CVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence            4555  688899998888889999543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=90.77  E-value=0.99  Score=48.20  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294          227 DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD  306 (466)
Q Consensus       227 ~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD  306 (466)
                      ++.+|+...    ..++|-++|+.|.+.+..+....     .     +-.+...+-+..|||++.       .+.|..||
T Consensus       166 ~~~~~V~~~----~~~~V~viD~~t~~v~~~i~~g~-----~-----p~~v~~SpDGr~lyv~~~-------dg~V~viD  224 (567)
T 1qks_A          166 ENLFSVTLR----DAGQIALIDGSTYEIKTVLDTGY-----A-----VHISRLSASGRYLFVIGR-------DGKVNMID  224 (567)
T ss_dssp             GGEEEEEET----TTTEEEEEETTTCCEEEEEECSS-----C-----EEEEEECTTSCEEEEEET-------TSEEEEEE
T ss_pred             CceEEEEeC----CCCeEEEEECCCCeEEEEEeCCC-----C-----ccceEECCCCCEEEEEcC-------CCeEEEEE
Confidence            456777222    25689999999966665554311     0     111222234567887642       34799999


Q ss_pred             CC--CCeeeeEEcCCcccccceeee----cCCCceEEEEEeeCceeEeeccccC
Q 012294          307 IR--SGNVAWEVKDEVDCFSDVTVS----DNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       307 pr--t~~~vW~~~~~~d~~~~~~v~----~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +.  +.+++.+..-..++ ..++++    +++..+|+.+-..+.+.++|..+++
T Consensus       225 ~~~~t~~~v~~i~~G~~P-~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          225 LWMKEPTTVAEIKIGSEA-RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             TTSSSCCEEEEEECCSEE-EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CCCCCCcEeEEEecCCCC-ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            96  88888877543333 367888    5999999888899999999988876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=90.71  E-value=1.1  Score=42.72  Aligned_cols=87  Identities=9%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcc----eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT----KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV  316 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~----k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~  316 (466)
                      .+.|-.+|++|       |+.      .|+.-...    .-....-+|.||+++        .+.|..||| +++.+|++
T Consensus        14 ~~~v~~~d~~t-------G~~------~w~~~~~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A           14 WNKIAIINKDT-------KEI------VWEYPLEKGWECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CSEEEEEETTT-------TEE------EEEEECCTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEE
T ss_pred             CCEEEEEECCC-------CeE------EEEeCCCccCCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEE
Confidence            46788999999       442      25543211    112233467777732        236999999 99999999


Q ss_pred             cCCc-ccccceeeecCCCceEEEEEeeCceeEee
Q 012294          317 KDEV-DCFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       317 ~~~~-d~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                      ..+. .....+.+.+++..|+.-+..++.++..|
T Consensus        72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC
T ss_pred             cCCCCccccccEECCCCCEEEEecCCCCEEEEEe
Confidence            8652 23445566677777554333256666655

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=90.24  E-value=11  Score=34.39  Aligned_cols=178  Identities=9%  Similarity=-0.012  Sum_probs=88.7

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeecC-C-CCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVT-R-SSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va-~-Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      ++.+|+...  .+     ..+-.+|+ +.+..... + -.....+++.. ++.||++..    ..+.|.+||+ +     
T Consensus       109 ~g~l~v~~~--~~-----~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~-----  170 (299)
T 2z2n_A          109 NGDIWFTEM--NG-----NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN----QNNAIGRITE-S-----  170 (299)
T ss_dssp             TSCEEEEET--TT-----TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET----TTTEEEEECT-T-----
T ss_pred             CCCEEEEec--CC-----ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC----CCCEEEEEcC-C-----
Confidence            578888764  22     13456676 44433321 1 11223335554 568999432    1357899999 6     


Q ss_pred             cccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCCcccccceeeecCCCc
Q 012294          257 EIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDEVDCFSDVTVSDNLSA  334 (466)
Q Consensus       257 ~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~~d~~~~~~v~~~~~~  334 (466)
                        ++...+ ....  ...+..+.. ..++.||++...      .+.|.+||+ +++.. +....+......+.+++++. 
T Consensus       171 --g~~~~~~~~~~--~~~~~~i~~-~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-  237 (299)
T 2z2n_A          171 --GDITEFKIPTP--ASGPVGITK-GNDDALWFVEII------GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID-  237 (299)
T ss_dssp             --CCEEEEECSST--TCCEEEEEE-CTTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-
T ss_pred             --CcEEEeeCCCC--CCcceeEEE-CCCCCEEEEccC------CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC-
Confidence              221111 0000  000111111 235778887642      346999999 77632 22221223344566776654 


Q ss_pred             eEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe-CCeEEEeE
Q 012294          335 IYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK-GGEIELWS  400 (466)
Q Consensus       335 i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~-~~~~~v~~  400 (466)
                      ||.....++.|+..|..  +   ....+.-.. ...      .-..++..+|+||++. ++.|..+.
T Consensus       238 l~v~~~~~~~i~~~d~~--g---~~~~~~~~~-~~~------~~~~i~~~~g~l~v~~~~~~l~~~~  292 (299)
T 2z2n_A          238 LWFTEWGANKIGRLTSN--N---IIEEYPIQI-KSA------EPHGICFDGETIWFAMECDKIGKLT  292 (299)
T ss_dssp             EEEEETTTTEEEEEETT--T---EEEEEECSS-SSC------CEEEEEECSSCEEEEETTTEEEEEE
T ss_pred             EEEeccCCceEEEECCC--C---ceEEEeCCC-CCC------ccceEEecCCCEEEEecCCcEEEEE
Confidence            77555467788888872  2   112221100 001      1112333788999885 67776664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=90.22  E-value=22  Score=37.95  Aligned_cols=180  Identities=11%  Similarity=0.072  Sum_probs=96.1

Q ss_pred             CCeeEEEecCCCCcc-ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC-------cccceEEEEeCCCCe-
Q 012294          241 SNSIMVYDINSLKPV-NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS-------KVTGNIKFWDIRSGN-  311 (466)
Q Consensus       241 l~sVE~YDp~t~~~~-~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~-------~~~~sVe~yDprt~~-  311 (466)
                      ...|-++|..+-+.+ ..  +      ..+.  ......|.+ +|..++.+..+.+.       .....|.+||..+++ 
T Consensus       146 ~~~i~v~dl~tg~~~~~~--~------~~~~--~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~  214 (695)
T 2bkl_A          146 EAVLHVIDVDSGEWSKVD--V------IEGG--KYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS  214 (695)
T ss_dssp             CCEEEEEETTTCCBCSSC--C------BSCC--TTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred             eEEEEEEECCCCCCcCCc--c------cCcc--cccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence            568999999984433 11  0      0000  012345654 44444444444320       123469999998876 


Q ss_pred             ---eeeEEcCCcccccceeeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE
Q 012294          312 ---VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH  384 (466)
Q Consensus       312 ---~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~  384 (466)
                         ++.+..++...+..+..++++..|+.. ..++    +|++.|..    ...|..+....        ......+ ..
T Consensus       215 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~l~~~~~~----~~~~~~l~~~~--------~~~~~~~-~~  280 (695)
T 2bkl_A          215 KDTVVHERTGDPTTFLQSDLSRDGKYLFVY-ILRGWSENDVYWKRPG----EKDFRLLVKGV--------GAKYEVH-AW  280 (695)
T ss_dssp             GCEEEECCCCCTTCEEEEEECTTSCCEEEE-EEETTTEEEEEEECTT----CSSCEEEEECS--------SCCEEEE-EE
T ss_pred             hceEEEecCCCCEEEEEEEECCCCCEEEEE-EeCCCCceEEEEEcCC----CCceEEeecCC--------CceEEEE-ec
Confidence               566654443455678899999887644 4444    77777532    24567666521        1122222 35


Q ss_pred             CCEEEEEeC-----CeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEe
Q 012294          385 ANQVFCGKG-----GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVW  459 (466)
Q Consensus       385 ~~~lf~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw  459 (466)
                      +|++|+..+     ..|-+|.-     +.    +  ...-++ .++..   .....|.++++-+++|+++-.+.....||
T Consensus       281 ~g~l~~~s~~~~~~~~l~~~d~-----~~----~--~~~~~~-~l~~~---~~~~~l~~~~~~~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          281 KDRFYVLTDEGAPRQRVFEVDP-----AK----P--ARASWK-EIVPE---DSSASLLSVSIVGGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             TTEEEEEECTTCTTCEEEEEBT-----TB----C--SGGGCE-EEECC---CSSCEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCcEEEEECCCCCCCEEEEEeC-----CC----C--CccCCe-EEecC---CCCCeEEEEEEECCEEEEEEEECCEEEEE
Confidence            666766654     33444431     11    0  000011 12211   12446888888888988887766666776


Q ss_pred             c
Q 012294          460 Q  460 (466)
Q Consensus       460 ~  460 (466)
                      .
T Consensus       346 ~  346 (695)
T 2bkl_A          346 V  346 (695)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.96  E-value=14  Score=35.45  Aligned_cols=148  Identities=10%  Similarity=0.099  Sum_probs=84.1

Q ss_pred             EEE--ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          223 IGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       223 va~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      +|+  .++.||+.-.    ..+.|+++|+..-       ..+.+ ...   ...|..+..-+.++.||++..  +   ..
T Consensus        82 lavd~~~~~ly~~d~----~~~~I~~~~~~g~-------~~~~~~~~~---~~~P~~iavdp~~g~ly~~d~--~---~~  142 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDS----VLGTVSVADTKGV-------KRKTLFREN---GSKPRAIVVDPVHGFMYWTDW--G---TP  142 (316)
T ss_dssp             EEEETTTTEEEEEET----TTTEEEEEETTSS-------SEEEEEECT---TCCEEEEEEETTTTEEEEEEC--S---SS
T ss_pred             EEEeecCCeEEEEEC----CCCEEEEEeCCCC-------ceEEEEECC---CCCcceEEeCCCCCEEEEEcc--C---CC
Confidence            666  4678998211    1468999998761       11111 000   001223334446899999864  2   12


Q ss_pred             ceEEEEeCCCCeeeeEEc-CCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294          300 GNIKFWDIRSGNVAWEVK-DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG  378 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~-~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~  378 (466)
                      +.|+++|+..... -... .....--+++++.++..||.+-...+.|+.+|+..-.   .-+-... ...+.      .-
T Consensus       143 ~~I~~~~~dG~~~-~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~-~~~~~------~P  211 (316)
T 1ijq_A          143 AKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILED-EKRLA------HP  211 (316)
T ss_dssp             CEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEEC-TTTTS------SE
T ss_pred             CeEEEEcCCCCCe-EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeec-CCccC------Cc
Confidence            5799999865431 1111 1122224678888899999888888999999986322   1121211 00011      23


Q ss_pred             eEEEEECCEEEEEeC--CeEEEeE
Q 012294          379 CKIECHANQVFCGKG--GEIELWS  400 (466)
Q Consensus       379 ~~~~~~~~~lf~~~~--~~~~v~~  400 (466)
                      ..|+..++.||++.-  +.|.++.
T Consensus       212 ~giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          212 FSLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCEEEEEECCCCeEEEEe
Confidence            467778999999853  4555544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=89.23  E-value=17  Score=40.47  Aligned_cols=147  Identities=10%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             EEEE--CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          223 IGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       223 va~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      +|+-  ++.||+.-.    ..+.|+++|+..       ...+.+ ....   ..|..+..-+.++.||++--  |   ..
T Consensus       476 LAvD~~~~~LY~tD~----~~~~I~v~~ldG-------~~~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~--g---~~  536 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDS----VLGTVSVADTKG-------VKRKTLFRENG---SKPRAIVVDPVHGFMYWTDW--G---TP  536 (791)
T ss_dssp             EEEETTTTEEEEEET----TTTEEEEEETTS-------SSEEEEEECTT---CCEEEEEEETTTTEEEEEEC--S---SS
T ss_pred             eeeeecCCcEEEEec----CCCeEEEEeCCC-------CeEEEEEeCCC---CCcceEEEecCCCCEEEecC--C---CC
Confidence            5654  678999211    256899999986       111111 0000   01333444456799999863  2   23


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      ..|++.+.......--.......-.+++++..++.||.+-...+.|..+|+.-   .+..+-+.... .+      ....
T Consensus       537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG---~~~~~v~~~~~-~l------~~P~  606 (791)
T 3m0c_C          537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG---GNRKTILEDEK-RL------AHPF  606 (791)
T ss_dssp             CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---CSCEEEEECTT-TT------SSEE
T ss_pred             CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC---CceEEEecCCC-cc------CCCC
Confidence            57999998765432112111122245778888999998888888888888743   33334333210 01      1456


Q ss_pred             EEEEECCEEEEEeCCeEEE
Q 012294          380 KIECHANQVFCGKGGEIEL  398 (466)
Q Consensus       380 ~~~~~~~~lf~~~~~~~~v  398 (466)
                      .|+..+++||++--+.-.|
T Consensus       607 glav~~~~lYwtD~~~~~I  625 (791)
T 3m0c_C          607 SLAVFEDKVFWTDIINEAI  625 (791)
T ss_dssp             EEEEETTEEEEEETTTTEE
T ss_pred             EEEEeCCEEEEEECCCCEE
Confidence            7888999999995443333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=88.89  E-value=27  Score=37.23  Aligned_cols=186  Identities=11%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC----------cccceEEEEeCCCC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS----------KVTGNIKFWDIRSG  310 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~----------~~~~sVe~yDprt~  310 (466)
                      ...|-++|..+-+.+.....        +.  ......|.+-+..||.+.. +++.          .+...|.+||..++
T Consensus       150 ~~~i~v~d~~tg~~~~~~~~--------~~--~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~  218 (710)
T 2xdw_A          150 WVTIKFMKVDGAKELPDVLE--------RV--KFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (710)
T ss_dssp             CEEEEEEETTTTEEEEEEEE--------EE--CSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             eEEEEEEECCCCCCCccccc--------Cc--ccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCC
Confidence            45889999998322211000        10  1223556654445555443 3321          12345999999887


Q ss_pred             e----eeeEEcCCcccccceeeecCCCceEEEEEe----eCceeEeeccccC----CCCCeEEeccCCccccccccccce
Q 012294          311 N----VAWEVKDEVDCFSDVTVSDNLSAIYKVGIN----SGEVSYMDLRKLG----DSSEWICLGDGRKMVNGKRKEGFG  378 (466)
Q Consensus       311 ~----~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~----~g~l~~~dlr~~~----~~~~W~~~~~~~~~m~~~~~~~~~  378 (466)
                      +    ++++..++......+.+++++..|+-....    +.+|++.|+....    +...+..+....        ....
T Consensus       219 ~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--------~~~~  290 (710)
T 2xdw_A          219 QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF--------EGEY  290 (710)
T ss_dssp             GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS--------SSCE
T ss_pred             cccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC--------CcEE
Confidence            6    445543333334578899999988755542    5689999998631    122566666511        1133


Q ss_pred             eEEEEECCEEEEEeCC-----eEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee-cceeEEEeec
Q 012294          379 CKIECHANQVFCGKGG-----EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG-GNKMFVTRKG  452 (466)
Q Consensus       379 ~~~~~~~~~lf~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~  452 (466)
                      ..+.-.+++||...+.     .|-+|.-     +.    +  ....++ .++..   .....|.++++- +++|+++-.+
T Consensus       291 ~~~s~dg~~l~~~s~~~~~~~~l~~~d~-----~~----~--~~~~~~-~l~~~---~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          291 DYVTNEGTVFTFKTNRHSPNYRLINIDF-----TD----P--EESKWK-VLVPE---HEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             EEEEEETTEEEEEECTTCTTCEEEEEET-----TS----C--CGGGCE-EEECC---CSSCEEEEEEEETTTEEEEEEEE
T ss_pred             EEEeccCCEEEEEECCCCCCCEEEEEeC-----CC----C--Ccccce-eccCC---CCCCeEEEEEEEcCCEEEEEEEE
Confidence            3456667888777543     2444431     11    0  100011 12222   222468777776 7777766544


Q ss_pred             cc--eEEEec
Q 012294          453 QQ--TVEVWQ  460 (466)
Q Consensus       453 ~~--~~~vw~  460 (466)
                      ..  -+.+|+
T Consensus       356 ~g~~~l~~~~  365 (710)
T 2xdw_A          356 DVKNTLQLHD  365 (710)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            43  355555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=88.58  E-value=1.7  Score=43.84  Aligned_cols=113  Identities=5%  Similarity=-0.137  Sum_probs=71.6

Q ss_pred             CeEEEEecCCCcCCC-eeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeec-C-CCC-cccceEE
Q 012294          228 KHLFVSFESGRRNSN-SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSH-S-DIS-KVTGNIK  303 (466)
Q Consensus       228 ~~IYaGg~~g~~~l~-sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~-~-g~~-~~~~sVe  303 (466)
                      ..+|+.-..... .. +|-++|+.|++.+.++....          .| .+...+-...||++... + +.. ...++|.
T Consensus        32 ~~~yV~~~~~~~-~~d~vsvID~~t~~v~~~i~vG~----------~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vs   99 (368)
T 1mda_H           32 RRSHITLPAYFA-GTTENWVSCAGCGVTLGHSLGAF----------LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVE   99 (368)
T ss_dssp             TEEEEEECTTTC-SSEEEEEEETTTTEEEEEEEECT----------TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred             CeEEEECCccCC-ccceEEEEECCCCeEEEEEeCCC----------CC-ceEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            468882111111 23 89999999987777665421          12 33333457789998631 1 111 1256899


Q ss_pred             EEeCCCCeeeeEEcCC-------cccccceeeecCCCceEEEEEe-eCceeE--eeccc
Q 012294          304 FWDIRSGNVAWEVKDE-------VDCFSDVTVSDNLSAIYKVGIN-SGEVSY--MDLRK  352 (466)
Q Consensus       304 ~yDprt~~~vW~~~~~-------~d~~~~~~v~~~~~~i~~v~~~-~g~l~~--~dlr~  352 (466)
                      .||+.|++++.+..-+       +..-..+.+++|+..+|+..-. +..|-+  +|+.+
T Consensus       100 viD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            9999999999887422       1223468899999999955433 456888  88855

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=88.58  E-value=0.2  Score=45.38  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             CCCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCC--------C--c-e-eEcCCchhHHHHhcccccCccccCC---
Q 012294           21 DSNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADS--------T--H-R-FIDRDPELFSILLSLLRTGNLPSKA---   84 (466)
Q Consensus        21 ~~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~--------~--~-~-fiDRDp~~F~~IL~ylrtG~l~~~~---   84 (466)
                      +...|+|.=. |+.|.+.+.+...   +.+++.|+.+        +  . + +.+.++.+++.|+.|++.-+-.-.+   
T Consensus         5 ~~~~i~L~SsDG~~F~V~~~vA~~---S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~   81 (169)
T 3v7d_A            5 VTSNVVLVSGEGERFTVDKKIAER---SLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED   81 (169)
T ss_dssp             -CCEEEEECTTCCEEEEEHHHHTT---SHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred             CCCeEEEEeCCCCEEEecHHHHHH---hHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc
Confidence            3467888765 8999999998654   5588888753        1  2 4 5689999999999999764321000   


Q ss_pred             --------------------CCcChHHHHHhhccccchhhHHhh
Q 012294           85 --------------------KAFDIEDLIEESKFYNIESLLINS  108 (466)
Q Consensus        85 --------------------~~~~~~~Ll~EA~f~~l~~l~~~~  108 (466)
                                          +...+-+|+.+|+|++|..|++.|
T Consensus        82 ~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~  125 (169)
T 3v7d_A           82 DDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAG  125 (169)
T ss_dssp             ------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence                                011245799999999999999876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.99  E-value=22  Score=35.21  Aligned_cols=183  Identities=10%  Similarity=0.020  Sum_probs=101.7

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCC--CCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR--SSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKP  254 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~--Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~  254 (466)
                      .++.||.+--  ..     ..+.++++.......+..  +..-.+ +|+-  ++.||+.-.    ..+.|+++|+..   
T Consensus       126 ~~~~ly~~D~--~~-----~~I~r~~~~g~~~~~~~~~~~~~p~g-lavd~~~g~lY~~d~----~~~~I~~~~~dg---  190 (386)
T 3v65_B          126 RRELVFWSDV--TL-----DRILRANLNGSNVEEVVSTGLESPGG-LAVDWVHDKLYWTDS----GTSRIEVANLDG---  190 (386)
T ss_dssp             TTTEEEEEET--TT-----TEEEEEETTSCCEEEEECSSCSCCCC-EEEETTTTEEEEEET----TTTEEEECBTTS---
T ss_pred             CCCeEEEEeC--CC-----CcEEEEecCCCCcEEEEeCCCCCccE-EEEEeCCCeEEEEcC----CCCeEEEEeCCC---
Confidence            3577888744  22     245667777665544322  212222 5554  688998211    145899999876   


Q ss_pred             ccccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC
Q 012294          255 VNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS  333 (466)
Q Consensus       255 ~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~  333 (466)
                          ...+. +...   ...|..+..-+.++.||++--  +   ..+.|+++|+......--.......--+++++.++.
T Consensus       191 ----~~~~~l~~~~---l~~P~giavdp~~g~ly~td~--~---~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~  258 (386)
T 3v65_B          191 ----AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDW--G---NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  258 (386)
T ss_dssp             ----CSCEEEECSS---CSCEEEEEEETTTTEEEEEEC--S---SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT
T ss_pred             ----CceEEeecCC---CCCCcEEEEEcCCCeEEEecc--C---CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC
Confidence                11111 1000   011333344456899999854  1   135799999876542211111111123577888899


Q ss_pred             ceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeE
Q 012294          334 AIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWS  400 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~  400 (466)
                      .||.+-...+.|+.+|+..   .+.-+-+...   +.      .--.|++.++.||++.  ++.|..+.
T Consensus       259 ~lY~aD~~~~~I~~~d~dG---~~~~~~~~~~---~~------~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          259 RMYWVDAKHHVIERANLDG---SHRKAVISQG---LP------HPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEEETTTTEEEEECTTS---CSCEEEECSS---CS------SEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCC---CeeEEEEECC---CC------CceEEEEECCEEEEeeCCCCeEEEEE
Confidence            9998888888888888753   2222222221   11      2336777999999994  45555554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=87.73  E-value=12  Score=40.61  Aligned_cols=216  Identities=11%  Similarity=0.073  Sum_probs=103.3

Q ss_pred             eeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce
Q 012294          200 ENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK  276 (466)
Q Consensus       200 vE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k  276 (466)
                      +...+..+.+.+.+.+. +.-.+ +++.  ++.||+.    ....+.|.++|+.+.....  ....+....   ...|..
T Consensus       388 I~~id~~~~~~~~~~~~~~~p~g-la~d~~~~~Ly~s----D~~~~~I~~~~~~g~~~~~--~~~~~i~~~---~~~P~g  457 (699)
T 1n7d_A          388 VRKMTLDRSEYTSLIPNLRNVVA-LDTEVASNRIYWS----DLSQRMICSTQLDRAHGVS--SYDTVISRD---IQAPDG  457 (699)
T ss_dssp             -CEECTTSCCEECCSCCCTTCCC-CEEETTTTEEEEC----CTTTTSBEEEESCCCCC-C--CCCCBCCSC---C--CCC
T ss_pred             eEEEeCCCCcceeeeccCcceEE-EccccccCeEEEE----ecCCCeEEEEecCCCCCCc--ceEEEEeCC---CCCcce
Confidence            33456666555544443 33333 5654  5789982    1124578999987510000  000000000   001222


Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEe-eCceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~~  355 (466)
                      +.+-..++.||++-.      ..+.|+++|+....+..-.......-.+++|++.++.||..-.. .+.|+.++|.-...
T Consensus       458 lavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             EECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred             EEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence            222235788898643      23479999998775332222222333567788788888855432 26676666542111


Q ss_pred             CCCeEEeccCCccccccccccceeEEEE--ECCEEEEEeCC--eEEEeEeeeecCCCCCCCCCcccceeeccccCccccC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIEC--HANQVFCGKGG--EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDM  431 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~~lf~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  431 (466)
                      .   + +...  .+.  .|.    .|+.  .+++||++-.+  .|+++.--         |.      .|+-++...  .
T Consensus       532 ~---~-l~~~--~l~--~Pn----Glavd~~~~~LY~aD~~~~~I~~~d~d---------G~------~~~~~~~~~--~  582 (699)
T 1n7d_A          532 Y---S-LVTE--NIQ--WPN----GITLDLLSGRLYWVDSKLHSISSIDVN---------GG------NRKTILEDE--K  582 (699)
T ss_dssp             C---E-ESCS--SCS--SCC----CEEECTTTCCEEEEETTTTEEEEECSS---------SS------CCEEECCCS--S
T ss_pred             e---E-EEeC--CCC--Ccc----EEEEeccCCEEEEEecCCCeEEEEccC---------CC------ceEEEEecC--C
Confidence            0   1 1110  011  122    3444  47899998544  46554320         11      133232210  0


Q ss_pred             CCCceEEEeeecceeEEEeeccceEEEec
Q 012294          432 GGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       432 ~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      ..+....|++-+++||++=...+.|.+..
T Consensus       583 ~~~~P~glavd~~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          583 RLAHPFSLAVFEDKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             SCSSCCCCEEETTEEEEECSTTTCEEEEE
T ss_pred             cCCCceEeEEECCEEEEEeCCCCeEEEEE
Confidence            11223345555678888776666665554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=86.93  E-value=17  Score=34.14  Aligned_cols=122  Identities=12%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEe-----eCceeEeeccccCCCCCeEEeccCCcccccccc
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGIN-----SGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRK  374 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~-----~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~  374 (466)
                      +.|-+||+.++++.--.  ....-..+++++++..||.+...     ++.|+..|+..-+-.+.-+ +...   ... .+
T Consensus       169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~-~~~~---~~~-~p  241 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH-FASV---PDG-LP  241 (305)
T ss_dssp             EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE-EECC---SSS-CC
T ss_pred             CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE-EEEC---CCC-CC
Confidence            47999999888733211  21122456788999999976654     3678888876311000001 1110   000 11


Q ss_pred             ccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeec
Q 012294          375 EGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKG  452 (466)
Q Consensus       375 ~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~  452 (466)
                      .  +..+ --+|.||++.++.|.+|+.     +.    + +-.+ +.-        ..  .+.++.||  |++||++-.+
T Consensus       242 d--gi~~-d~~G~lwv~~~~gv~~~~~-----~g----~-~~~~-~~~--------~~--~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          242 D--GFCV-DRGGWLWSSSGTGVCVFDS-----DG----Q-LLGH-IPT--------PG--TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             C--SEEE-CTTSCEEECCSSEEEEECT-----TS----C-EEEE-EEC--------SS--CCCEEEECTTSCEEEEEETT
T ss_pred             C--eEEE-CCCCCEEEecCCcEEEECC-----CC----C-EEEE-EEC--------CC--ceeEEEEeCCCCEEEEEcCC
Confidence            1  2222 2357799998888888764     11    1 1111 111        12  37788885  6689998653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.74  E-value=19  Score=33.00  Aligned_cols=148  Identities=9%  Similarity=0.039  Sum_probs=82.3

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                      .+.|-+.++.||++-..      .+.|.++|+.++.+.-........-.+++++.++..||.....++.|.+.|+..-..
T Consensus        40 gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            34444567899998752      347999999877532212111123356778888889998777888888888753211


Q ss_pred             CCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeC----CeEEEeEeeeecCCCCCCCCCcccceeeccccCccc
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKG----GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT  429 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  429 (466)
                          ..+.+.  .+.  .|    ..|++.  ++.||++-.    +.|.++.-     +.    . ..+.+..        
T Consensus       114 ----~~~~~~--~~~--~P----~~i~vd~~~g~lyv~~~~~~~~~I~~~~~-----dg----~-~~~~~~~--------  163 (267)
T 1npe_A          114 ----RVLFDT--GLV--NP----RGIVTDPVRGNLYWTDWNRDNPKIETSHM-----DG----T-NRRILAQ--------  163 (267)
T ss_dssp             ----EEEECS--SCS--SE----EEEEEETTTTEEEEEECCSSSCEEEEEET-----TS----C-CCEEEEC--------
T ss_pred             ----EEEEEC--CCC--Cc----cEEEEeeCCCEEEEEECCCCCcEEEEEec-----CC----C-CcEEEEE--------
Confidence                111110  011  12    245555  789999863    35555431     11    1 0111111        


Q ss_pred             cCCCCceEEEeee--cceeEEEeeccceEEEec
Q 012294          430 DMGGSKITNLSFG--GNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       430 ~~~~~~i~~~~~g--g~r~f~~~~~~~~~~vw~  460 (466)
                       ...+.-..|++.  |++||++-...+.|.+.+
T Consensus       164 -~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          164 -DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             -TTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence             112245566664  667888777766666654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=86.50  E-value=5.4  Score=40.19  Aligned_cols=151  Identities=13%  Similarity=-0.014  Sum_probs=80.8

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      -++.||++..  .+     ..+-++|+.+.+-..+... ....-++..-++.||++...+.   ..|.++|+.+......
T Consensus       140 ~~g~lyv~d~--~~-----~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~---~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          140 GNNTVLAYQR--DD-----PRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGT---HTVYVYMKASGWAPTR  209 (409)
T ss_dssp             STTEEEEEET--TT-----TEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTT---CEEEEEEGGGTTCEEE
T ss_pred             CCCCEEEEec--CC-----CcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCC---ceEEEEEcCCCceeEE
Confidence            4577888865  32     2456777776544333222 1111223223346888433221   2789999987221111


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE----EcCC-c-ccccceeeecC
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE----VKDE-V-DCFSDVTVSDN  331 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~----~~~~-~-d~~~~~~v~~~  331 (466)
                      ++...   ..  ....+..+.+.+.++.||++-.       .+.|.+||+.++....-    ..+. . .++.+++++++
T Consensus       210 ~g~~~---~~--~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~  277 (409)
T 3hrp_A          210 IGQLG---ST--FSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV  277 (409)
T ss_dssp             EEECC---TT--SCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred             eeecc---ch--hcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence            11000   00  0001222334445899999432       34799999998864322    1111 1 11237888888


Q ss_pred             CCceEEEEEeeCceeEeecc
Q 012294          332 LSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       332 ~~~i~~v~~~~g~l~~~dlr  351 (466)
                      +..||.....++.|+..|+.
T Consensus       278 ~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          278 DSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             TTEEEEEETTTTEEEEECTT
T ss_pred             CCEEEEEeCCCCEEEEEecC
Confidence            88899777778888877754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=85.99  E-value=3.6  Score=40.43  Aligned_cols=73  Identities=8%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             eeEEeeCCeEEEEeecCCCCc----ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          277 LRWVSSYNLLLASGSHSDISK----VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~----~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                      +...+-++.|||+..-++..+    ..++|..||..+++++-+...+.  -..+++++++..||..+.  +.|.+.|+.+
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~--~~v~v~D~~t  334 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG--GNVNVYDISQ  334 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS--SCEEEEECSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC--CeEEEEECCC
Confidence            344455689999765222111    13489999999999987765444  678899999999996663  9999999987


Q ss_pred             c
Q 012294          353 L  353 (466)
Q Consensus       353 ~  353 (466)
                      .
T Consensus       335 ~  335 (361)
T 2oiz_A          335 P  335 (361)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=85.79  E-value=23  Score=33.10  Aligned_cols=50  Identities=22%  Similarity=0.180  Sum_probs=32.7

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeee-cCCCceEE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVS-DNLSAIYK  337 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~-~~~~~i~~  337 (466)
                      .+|.||++...      .+.|.+|||.+++++-+..-|......++.. +++..||.
T Consensus       208 ~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          208 AEGKLWVACYN------GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             TTSCEEEEEET------TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             CCCCEEEEEcC------CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence            57789988752      2369999999998776665443333445554 55556553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=85.61  E-value=28  Score=33.95  Aligned_cols=183  Identities=9%  Similarity=0.024  Sum_probs=100.5

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      .++.||.+--  ..     ..+.++++....-..+... -....++|+-  ++.||+.-.    ..+.|+++|+..    
T Consensus        83 ~~~~ly~~D~--~~-----~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~----~~~~I~~~~~dG----  147 (349)
T 3v64_C           83 RRELVFWSDV--TL-----DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS----GTSRIEVANLDG----  147 (349)
T ss_dssp             TTTEEEEEET--TT-----TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETTS----
T ss_pred             cccEEEEEec--cC-----CceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC----CCCeEEEEcCCC----
Confidence            4577888754  22     2456677766554433221 1122235654  688998211    146899999986    


Q ss_pred             ccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc-CCcccccceeeecCCC
Q 012294          256 NEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK-DEVDCFSDVTVSDNLS  333 (466)
Q Consensus       256 ~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~-~~~d~~~~~~v~~~~~  333 (466)
                         ...+.. ...   ...|..+.+-+.++.||++--.+     .+.|+++|+...... ... .....--+++++.+++
T Consensus       148 ---~~~~~l~~~~---l~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          148 ---AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             ---CSCEEEECTT---CSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCE-ESCCSSCSCEEEEEEETTTT
T ss_pred             ---CceEEEEeCC---CCCcceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcE-EEEECCCCCcceEEEeCCCC
Confidence               111111 000   01123334445689999986421     357999998765411 111 1111123577888899


Q ss_pred             ceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeE
Q 012294          334 AIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWS  400 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~  400 (466)
                      .||.+-...+.|+.+|+.--.   .-+-+...   +.      .-..|++.++.||++.  ++.|....
T Consensus       216 ~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~---~~------~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          216 RMYWVDAKHHVIERANLDGSH---RKAVISQG---LP------HPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCS---CEEEECSS---CS------SEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCc---eEEEEeCC---CC------CceEEEEECCEEEEecCCCCeEEEEE
Confidence            999888888888888875322   11222220   11      2235677899999995  44454443

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=85.58  E-value=0.33  Score=40.02  Aligned_cols=77  Identities=9%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             CCeEEEEE-CCeEEEEeHHHhhccCCCCccccccCC------Cce-eEcCCchhHHHHhcccccCc---------cccCC
Q 012294           22 SNIVTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS------THR-FIDRDPELFSILLSLLRTGN---------LPSKA   84 (466)
Q Consensus        22 ~~~V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~------~~~-fiDRDp~~F~~IL~ylrtG~---------l~~~~   84 (466)
                      .+.|+|.- .|+.|.+++.+...   +.+++.|+.+      +++ +.+.++.+++.|++|++.-+         -.+++
T Consensus         3 ~~~v~L~SsDg~~f~V~~~vA~~---S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~   79 (99)
T 1hv2_A            3 QDFVTLVSKDDKEYEISRSAAMI---SPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPE   79 (99)
T ss_dssp             CSEEEEEETTTEEEEEEHHHHTT---CHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCC
T ss_pred             CcEEEEEecCCCEEEECHHHHHH---hHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCC
Confidence            46788888 79999999997443   5689998863      234 66999999999999998643         11110


Q ss_pred             ---CCcChHHHHHhhccccc
Q 012294           85 ---KAFDIEDLIEESKFYNI  101 (466)
Q Consensus        85 ---~~~~~~~Ll~EA~f~~l  101 (466)
                         +....-+|+.+|+|++|
T Consensus        80 w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           80 FEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             CCCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHHHHhCc
Confidence               01124578888988875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=85.58  E-value=30  Score=34.26  Aligned_cols=210  Identities=10%  Similarity=0.052  Sum_probs=113.6

Q ss_pred             eeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce
Q 012294          200 ENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK  276 (466)
Q Consensus       200 vE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k  276 (466)
                      +.+.++.....+.+.+- +. ..+++..  ++.||..-.    ..+.|.++|+..       +..+.+-..+  ...|..
T Consensus        98 I~~i~~~~~~~~~~~~~~~~-~~gl~~d~~~~~ly~~D~----~~~~I~r~~~~g-------~~~~~~~~~~--~~~p~g  163 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDV----TLDRILRANLNG-------SNVEEVVSTG--LESPGG  163 (386)
T ss_dssp             EEEECTTSCCCEEEECSCSC-EEEEEEETTTTEEEEEET----TTTEEEEEETTS-------CCEEEEECSS--CSCCCC
T ss_pred             ceeeccCCCcEEEEecCCCc-cEEEEEecCCCeEEEEeC----CCCcEEEEecCC-------CCcEEEEeCC--CCCccE
Confidence            44556666555544433 33 3336655  578998211    146799999987       2111000000  011233


Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEee-CceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINS-GEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~-g~l~~~dlr~~~~  355 (466)
                      +.+-..++.||++-..      .+.|+++|+......--..+....-.++++++.++.||..-... +.|+.+|+.-...
T Consensus       164 lavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             EEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence            3333468899998652      34799999876642222222223345778888888888766555 7788887754221


Q ss_pred             CCCeEEeccCCccccccccccceeEEEE--ECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIEC--HANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDM  431 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  431 (466)
                         -+-+..   .+.      .--.|+.  .++.||++.  .+.|+++.-     +    |.      .|+-++..    
T Consensus       238 ---~~~~~~---~~~------~PnGlavd~~~~~lY~aD~~~~~I~~~d~-----d----G~------~~~~~~~~----  286 (386)
T 3v65_B          238 ---RIIADT---HLF------WPNGLTIDYAGRRMYWVDAKHHVIERANL-----D----GS------HRKAVISQ----  286 (386)
T ss_dssp             ---EEEECS---SCS------CEEEEEEEGGGTEEEEEETTTTEEEEECT-----T----SC------SCEEEECS----
T ss_pred             ---EEEEEC---CCC------CeeeEEEeCCCCEEEEEECCCCEEEEEeC-----C----CC------eeEEEEEC----
Confidence               122221   011      1224555  589999985  445555532     1    11      12222221    


Q ss_pred             CCCceEEEeeecceeEEEeeccceEEEec
Q 012294          432 GGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       432 ~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      ..+.-..|++-+++||++-.....|....
T Consensus       287 ~~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          287 GLPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             SCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence            23345667777788888877777766654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=85.41  E-value=20  Score=31.96  Aligned_cols=71  Identities=14%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             eeeEEeeCCeEEEEeecCCCCcccceEEEEeCC-CCeeeeEEcCCcccccceeeecCCCceEEEEEe----------eCc
Q 012294          276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR-SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGIN----------SGE  344 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~----------~g~  344 (466)
                      .+.|.+-+..|++++..++      .+++|+.. ++..+-....+......+..++++..|+..+..          .+.
T Consensus       177 ~~~~s~dg~~l~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTG------QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             EEEECTTSSEEEEEECTTS------SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             cceECCCCCEEEEEecCCC------CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            4556665566666665443      35555543 233334444444445567788999887765553          256


Q ss_pred             eeEeeccc
Q 012294          345 VSYMDLRK  352 (466)
Q Consensus       345 l~~~dlr~  352 (466)
                      |++.|+..
T Consensus       251 l~~~d~~~  258 (297)
T 2ojh_A          251 VQLMDMDG  258 (297)
T ss_dssp             EEEEETTS
T ss_pred             EEEEecCC
Confidence            88888865

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=84.96  E-value=5.6  Score=40.49  Aligned_cols=87  Identities=9%  Similarity=0.019  Sum_probs=59.6

Q ss_pred             CceeecCcceeeEEeeCCeEEEEeecC--CCCc-ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC-ceEEEEEee
Q 012294          267 DIESAIPATKLRWVSSYNLLLASGSHS--DISK-VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS-AIYKVGINS  342 (466)
Q Consensus       267 ~~w~~~~~~k~~~~~~~~~Lyv~Gg~~--g~~~-~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~-~i~~v~~~~  342 (466)
                      .+|.....-.+....-.+.|||+-..+  |+.. --+.|-.+|..|.+++-.+.- +...-.+++++++. .||..+..+
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTT
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCC
Confidence            345543333344455789999975422  2221 124799999999999855421 33335789999997 788878889


Q ss_pred             CceeEeeccccC
Q 012294          343 GEVSYMDLRKLG  354 (466)
Q Consensus       343 g~l~~~dlr~~~  354 (466)
                      ++|.+.|..+..
T Consensus       354 ~~VsViD~~t~k  365 (386)
T 3sjl_D          354 KTLYIHDAESGE  365 (386)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CeEEEEECCCCc
Confidence            999999998865

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=84.95  E-value=22  Score=32.16  Aligned_cols=262  Identities=11%  Similarity=0.075  Sum_probs=125.9

Q ss_pred             CCceeeecCCcEEEEcC--CceeeEecC----C-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCC
Q 012294          134 PSAIATTNYGTLHVSHG--SKITSFDWS----M-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKE  206 (466)
Q Consensus       134 ~~a~~a~~~g~lyva~G--G~ve~YDW~----~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~  206 (466)
                      +.+++...+|.+|++..  +.+.+||-.    . ..........+.+.+   -++.+|+...  .++     .+-.||+.
T Consensus        17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~---~~g~l~v~~~--~~~-----~i~~~~~~   86 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTIS---SDGEVWFTEN--AAN-----KIGRITKK   86 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC---TTSCEEEEET--TTT-----EEEEECTT
T ss_pred             ccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEEC---CCCCEEEeCC--CCC-----eEEEECCC
Confidence            33445566888997653  446666621    1 100001111112211   3578888754  222     24456665


Q ss_pred             CCceeecC-CC-CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC
Q 012294          207 TLNWENVT-RS-SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY  283 (466)
Q Consensus       207 t~~W~~va-~M-r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~  283 (466)
                       .+..... +. -....+++.. ++.||++...    ...|.+||+ +       ++...+.... ....+..+.. ..+
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~-~-------g~~~~~~~~~-~~~~~~~i~~-~~~  151 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN----GNRIGRITD-D-------GKIREYELPN-KGSYPSFITL-GSD  151 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT-T-------CCEEEEECSS-TTCCEEEEEE-CTT
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCCCEEEEecC----CceEEEECC-C-------CCEEEecCCC-CCCCCceEEE-cCC
Confidence             3333322 11 1233335555 5789994321    357889999 4       1111110000 0000111111 236


Q ss_pred             CeEEEEeecCCCCcccceEEEEeCCCCeeeeE-EcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          284 NLLLASGSHSDISKVTGNIKFWDIRSGNVAWE-VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~-~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      |.||++..      ..+.|.+||+ ++++..- ..........+.+++++. ||.....++.|+..|. . +   ....+
T Consensus       152 g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~-g---~~~~~  218 (299)
T 2z2n_A          152 NALWFTEN------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-S-G---EITEF  218 (299)
T ss_dssp             SCEEEEET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-C---CEEEE
T ss_pred             CCEEEEeC------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-C-C---cEEEE
Confidence            78888763      1346999999 7764422 111222233566666644 7755555778888877 3 2   12222


Q ss_pred             ccCCccccccccccceeEEEEE-CCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEE
Q 012294          363 GDGRKMVNGKRKEGFGCKIECH-ANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNL  439 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~  439 (466)
                      ..     ..  ....-..|+.. +|+||++.  ++.|.+|..-     .     .     ++.--+.    .....+..+
T Consensus       219 ~~-----~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-----g-----~-----~~~~~~~----~~~~~~~~i  272 (299)
T 2z2n_A          219 KI-----PT--PNARPHAITAGAGIDLWFTEWGANKIGRLTSN-----N-----I-----IEEYPIQ----IKSAEPHGI  272 (299)
T ss_dssp             EC-----SS--TTCCEEEEEECSTTCEEEEETTTTEEEEEETT-----T-----E-----EEEEECS----SSSCCEEEE
T ss_pred             EC-----CC--CCCCceeEEECCCCCEEEeccCCceEEEECCC-----C-----c-----eEEEeCC----CCCCccceE
Confidence            11     00  00011234443 57899984  5778887631     1     1     1110010    123467777


Q ss_pred             eeecceeEEEeeccceEEEec
Q 012294          440 SFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       440 ~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      .+-.++|+++-. .+++-+.+
T Consensus       273 ~~~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          273 CFDGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             EECSSCEEEEET-TTEEEEEE
T ss_pred             EecCCCEEEEec-CCcEEEEE
Confidence            776678888754 35555554

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=84.44  E-value=0.43  Score=39.07  Aligned_cols=75  Identities=9%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             eEEEEE-CCeEEEEeHHHhhccCCCCccccccCC---------Cce-eEcCCchhHHHHhcccccCcc------ccC---
Q 012294           24 IVTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS---------THR-FIDRDPELFSILLSLLRTGNL------PSK---   83 (466)
Q Consensus        24 ~V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~~-fiDRDp~~F~~IL~ylrtG~l------~~~---   83 (466)
                      .|+|.- .|+.|.+++.+...   +.+++.|+.+         +++ +.+.++.+++.|++|++.-+-      .++   
T Consensus         2 ~v~L~SsDg~~f~V~~~~A~~---S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~   78 (96)
T 2fnj_C            2 YVKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP   78 (96)
T ss_dssp             EEEEECTTSCEEEEEHHHHTT---SHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred             eEEEEecCCCEEEeCHHHHHH---hHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcc
Confidence            466666 69999999997443   5699999864         134 668999999999999976330      110   


Q ss_pred             CCCcChHHHHHhhccccc
Q 012294           84 AKAFDIEDLIEESKFYNI  101 (466)
Q Consensus        84 ~~~~~~~~Ll~EA~f~~l  101 (466)
                      -+....-+|+.+|+|++|
T Consensus        79 vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           79 IAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCTTTHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHhCc
Confidence            012346788999999875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=84.10  E-value=11  Score=38.25  Aligned_cols=148  Identities=11%  Similarity=-0.017  Sum_probs=84.2

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcccccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      +.||+.=.  .      ..+-++|+.+.+.+.+...-....++++. ++.||+.-..+......+..+++..       +
T Consensus       153 g~Lyv~D~--~------~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-------~  217 (433)
T 4hw6_A          153 DDLYWVGQ--R------DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-------G  217 (433)
T ss_dssp             CEEEEECB--T------SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG-------T
T ss_pred             CEEEEEeC--C------CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC-------C
Confidence            67887743  1      46778888777776655431122224543 4569993221222234566777654       1


Q ss_pred             ccccccCCce-eecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc--cceeeecCCCceE
Q 012294          260 QNEIYGTDIE-SAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF--SDVTVSDNLSAIY  336 (466)
Q Consensus       260 ~~~~~~~~~w-~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~--~~~~v~~~~~~i~  336 (466)
                      ...   .... ....|..+.+.+.++.||++-..      .+.|.+||+.+++++......++.-  ..+++++++..||
T Consensus       218 ~~~---~~~~~~~~~P~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          218 FTE---RLSLCNARGAKTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             TCC---EEEEEECSSBCCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             eec---cccccccCCCCEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence            100   0000 00112223333347889987642      3479999999887644443222111  2488999999999


Q ss_pred             EEEEeeCceeEeeccc
Q 012294          337 KVGINSGEVSYMDLRK  352 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~  352 (466)
                      ..-..++.|+.+|+..
T Consensus       289 vad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EEETTTTEEEEEEBCT
T ss_pred             EEeCCCCEEEEEeCCC
Confidence            8877888998888753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=83.96  E-value=25  Score=33.83  Aligned_cols=154  Identities=8%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC-CCeeeeEEc--CCcccccceeeecCCCceEEEEE-----------
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR-SGNVAWEVK--DEVDCFSDVTVSDNLSAIYKVGI-----------  340 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-t~~~vW~~~--~~~d~~~~~~v~~~~~~i~~v~~-----------  340 (466)
                      ..+.+.+-+..||++.-       . .|.+||.. ++++.....  ..+. ...+++++++..||.+.+           
T Consensus        43 ~~~a~spdg~~l~~~~~-------~-~v~~~~~~~~g~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAM-------K-KWSSFAVKSPTEIVHEASHPIGGH-PRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             SEEEECTTSSEEEEEEB-------T-EEEEEEEEETTEEEEEEEEECCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             cEEEECCCCCEEEEEcc-------c-eEEEEEECCCCCEEEeeEeecCCC-CccEEECCCCCEEEEEEecCCcceeccce
Confidence            33444444556776654       1 69999987 777653322  1122 345788999986554322           


Q ss_pred             ---eeCceeEeeccccCCCCCeE-EeccCCccccccccccceeEEEEE--CCEEEEEe--CCeEEEeEeeeecCCCCCCC
Q 012294          341 ---NSGEVSYMDLRKLGDSSEWI-CLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGK--GGEIELWSEIVMGSRKSREG  412 (466)
Q Consensus       341 ---~~g~l~~~dlr~~~~~~~W~-~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~--~~~~~v~~~~~~~~~~~~~~  412 (466)
                         .+|.+.+.++..-+.   -. .+..    ... .....-..++..  +.+||++-  ++.|.+|.--    ..    
T Consensus       114 ~~~~~g~v~v~~~~~~g~---~~~~~~~----~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~----~~----  177 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGK---LEKNVQN----YEY-QENTGIHGMVFDPTETYLYSADLTANKLWTHRKL----AS----  177 (365)
T ss_dssp             ESSSCCEEEEEEECTTCC---EEEEEEE----EEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC----TT----
T ss_pred             eecCCceEEEEccCCCCc---CcceEee----EEe-CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC----CC----
Confidence               477777777764221   01 0110    000 000011223322  44688763  4688888642    01    


Q ss_pred             CCcccceeeccccCccccC-CCCceEEEee--ecceeEEEeeccceEEEec
Q 012294          413 GPLEERVFRKNLMGRVTDM-GGSKITNLSF--GGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       413 ~~~~~~~~r~~~~~~~~~~-~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~  460 (466)
                      +.+. .+ .     ..+-. .+..+..++|  -|.+||++-+..+.|.||+
T Consensus       178 g~~~-~~-~-----~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          178 GEVE-LV-G-----SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             SCEE-EE-E-----EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEE-Ee-e-----eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            1111 01 0     11100 1334666655  5778999987778888985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=83.82  E-value=8.9  Score=38.95  Aligned_cols=148  Identities=11%  Similarity=0.042  Sum_probs=84.8

Q ss_pred             CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCC-CCcccc
Q 012294          181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINS-LKPVNE  257 (466)
Q Consensus       181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t-~~~~~~  257 (466)
                      +.||++--    +    ..+-++|+...+.+.+.+.-....++++. ++ .||+....+......+..+++.. ++....
T Consensus       150 g~Lyv~d~----~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~  221 (430)
T 3tc9_A          150 NHLYLVGE----Q----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITE  221 (430)
T ss_dssp             EEEEEEEB----T----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEE
T ss_pred             CeEEEEeC----C----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeee
Confidence            66887744    1    45678888887776654441222235554 33 49993221222234577788765 211111


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee-eeEEcCCcccccceeeecCCCceE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV-AWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~-vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      +..          ...|..+.+.+.++.||++--.      .+.|.+||+.++.. .....+....-..+++++++..||
T Consensus       222 l~~----------~~~p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          222 LTK----------GQNCNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             EEE----------CSSCCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             ecc----------CCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            100          0012223333347889988652      34799999998874 222221111123588999999999


Q ss_pred             EEEEeeCceeEeeccc
Q 012294          337 KVGINSGEVSYMDLRK  352 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~  352 (466)
                      .+...++.|+..|+..
T Consensus       286 v~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEeCCc
Confidence            8888889999888754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=83.31  E-value=26  Score=31.68  Aligned_cols=141  Identities=12%  Similarity=0.017  Sum_probs=70.6

Q ss_pred             CCcEEEEecccCCCceeccceeeeeCCCCceeec--CCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENV--TRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~v--a~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      ++.+|+...  .++     .+-.||+. .+....  +..-....+++.. ++.||++...    .+.|.+||+ +     
T Consensus       114 ~g~l~v~~~--~~~-----~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~-----  175 (300)
T 2qc5_A          114 NGDIWFTQL--NGD-----RIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ----NNSIGRITN-T-----  175 (300)
T ss_dssp             TTCEEEEET--TTT-----EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-T-----
T ss_pred             CCCEEEEcc--CCC-----eEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC----CCeEEEECC-C-----
Confidence            578887754  222     34566766 443322  1111222335543 5679994321    357889998 4     


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE-EcCCcccccceeeecCCCce
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE-VKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~-~~~~~d~~~~~~v~~~~~~i  335 (466)
                        ++...+..+. ....+..+..- -+|.||++...      .+.|.+||+ +++.... ...+......+.+++++. |
T Consensus       176 --g~~~~~~~~~-~~~~~~~i~~d-~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l  243 (300)
T 2qc5_A          176 --GKLEEYPLPT-NAAAPVGITSG-NDGALWFVEIM------GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-I  243 (300)
T ss_dssp             --CCEEEEECSS-TTCCEEEEEEC-TTSSEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-E
T ss_pred             --CcEEEeeCCC-CCCCcceEEEC-CCCCEEEEccC------CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-E
Confidence              1111110000 00011122221 36788887642      336999999 6653332 222223334566666654 7


Q ss_pred             EEEEEeeCceeEeec
Q 012294          336 YKVGINSGEVSYMDL  350 (466)
Q Consensus       336 ~~v~~~~g~l~~~dl  350 (466)
                      |.....++.|+..|.
T Consensus       244 ~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          244 WFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEETTTTEEEEECT
T ss_pred             EEeccCCCeEEEECC
Confidence            755545677777776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=82.55  E-value=6.8  Score=39.36  Aligned_cols=76  Identities=9%  Similarity=-0.227  Sum_probs=55.4

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE---------eeCceeEeecccc
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI---------NSGEVSYMDLRKL  353 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~---------~~g~l~~~dlr~~  353 (466)
                      -..+||.-..++.  ...+|-++|+.+++++=+..-...+  .+.+++++..||+...         .++.|.++|+.++
T Consensus        31 ~~~~yV~~~~~~~--~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           31 SRRSHITLPAYFA--GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             TTEEEEEECTTTC--SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             CCeEEEECCccCC--ccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            4678998763332  2228999999999998666433333  7899999999996653         4788999999998


Q ss_pred             CCCCCeEEec
Q 012294          354 GDSSEWICLG  363 (466)
Q Consensus       354 ~~~~~W~~~~  363 (466)
                      +. -.++.+.
T Consensus       107 ~v-v~~I~v~  115 (368)
T 1mda_H          107 LP-IADIELP  115 (368)
T ss_dssp             CE-EEEEEET
T ss_pred             CE-EEEEECC
Confidence            73 3446565

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=82.19  E-value=58  Score=34.88  Aligned_cols=182  Identities=9%  Similarity=0.051  Sum_probs=104.8

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEE--ECCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      -++.||..--  .+     ..+.++++.......+... -....++|+  .++.||+.-.    ..+.|++.|+..    
T Consensus        47 ~~~~lywtD~--~~-----~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~----~~~~I~v~~~dG----  111 (628)
T 4a0p_A           47 TDNRIYWTDI--SL-----KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT----GTNRIEVSKLDG----  111 (628)
T ss_dssp             TTTEEEEEET--TT-----TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETTS----
T ss_pred             CCCEEEEEEC--CC-----CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC----CCCEEEEEecCC----
Confidence            4578888754  22     2344556655444433322 122233666  4788999211    146899999976    


Q ss_pred             cccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc
Q 012294          256 NEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA  334 (466)
Q Consensus       256 ~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~  334 (466)
                         ...+. +..+.   -.|..+..-+..|.||++--  |   ..+.|++.|+...... ...+....-.+++++.++..
T Consensus       112 ---~~~~~l~~~~l---~~P~~iavdp~~G~lY~tD~--g---~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~  179 (628)
T 4a0p_A          112 ---QHRQVLVWKDL---DSPRALALDPAEGFMYWTEW--G---GKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRR  179 (628)
T ss_dssp             ---TTCEEEECSSC---CCEEEEEEETTTTEEEEEEC--S---SSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTE
T ss_pred             ---CcEEEEEeCCC---CCcccEEEccCCCeEEEeCC--C---CCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCE
Confidence               11111 10010   11344445556899999753  2   1347999988765411 11112222246788889999


Q ss_pred             eEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeE
Q 012294          335 IYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWS  400 (466)
Q Consensus       335 i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~  400 (466)
                      ||.+-...+.|..+|+....+    .-+..   .+.      .-..|+..++.||++.  ++.|.+..
T Consensus       180 LY~aD~~~~~I~~~d~dG~~~----~v~~~---~l~------~P~glav~~~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          180 LYWTDLDTNLIESSNMLGLNR----EVIAD---DLP------HPFGLTQYQDYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSC----EEEEE---CCS------CEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCEEEEEcCCCCce----EEeec---cCC------CceEEEEECCEEEEecCCCCEEEEEE
Confidence            999988999999999865332    22222   011      3346888899999985  56666655

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=81.50  E-value=28  Score=35.00  Aligned_cols=174  Identities=9%  Similarity=0.144  Sum_probs=96.1

Q ss_pred             EecCCCCccccccccccccCCceeecCcceeeEEeeCC---eEEEEeecCCCCcccceEEEEeCCCC---eeeeEEcCCc
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYN---LLLASGSHSDISKVTGNIKFWDIRSG---NVAWEVKDEV  320 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~---~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~~~~~~  320 (466)
                      .+|..+|.++++-...    .++ .++...+.|-..+.   +|.+++        -.+|.+|+|.++   +.+-+|..+.
T Consensus        20 ~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~lw~~~~~~~~~~~~~~~~~~   86 (356)
T 2w18_A           20 INPGNLQLVSELKNPS----GSC-SVDVSAMFWERAGCKEPCIITAC--------EDVVSLWKALDAWQWEKLYTWHFAE   86 (356)
T ss_dssp             ----CEEEEEEECCCC----SSC-EEEEEEEEEC----CEEEEEEEE--------SSEEEEEEESSSSBEEEEEEEECCS
T ss_pred             cCcceeeeeehhcCCC----CCe-EEEEeeeeeccCCCCccEEEEec--------cceEEEcccCCCccceeeEEEeccC
Confidence            3566666666665533    222 12333334433222   333333        347999999999   5554444444


Q ss_pred             ccccceeeec-CCCceEEEEEeeCceeEeeccccCC--C----CCeEEeccCCccccccccccceeEEEEECCEEEEE-e
Q 012294          321 DCFSDVTVSD-NLSAIYKVGINSGEVSYMDLRKLGD--S----SEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-K  392 (466)
Q Consensus       321 d~~~~~~v~~-~~~~i~~v~~~~g~l~~~dlr~~~~--~----~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~  392 (466)
                      .+...+...+ ..+.   ||+.=|+|-..+.|++--  .    .+|..-+.           ...-....-++++..+ .
T Consensus        87 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g-----------~~~~v~~l~~g~lv~ss~  152 (356)
T 2w18_A           87 VPVLQIVPVPDVYNL---VCVALGNLEIREIRALFCSSDDESEKQVLLKSG-----------NIKAVLGLTKRRLVSSSG  152 (356)
T ss_dssp             SCEEEECCCTTCCSC---EEEEECSSSEEEEEEECC------CCEEEEEEE-----------EEEEEEEETTTEEEEEES
T ss_pred             ceeEEEEEcCcccce---eeeeeccccccceEEEEECCCccccccEEEeCC-----------CeEEEEecCCCcEEEecc
Confidence            3334444444 3455   799999988888888773  1    12221111           0111233457888777 3


Q ss_pred             ---CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccCC
Q 012294          393 ---GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       393 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                         ++.|++|.=-    ..   |.      ...+.-++   +....|..|++  |-..++++=.+...|-||+-..
T Consensus       153 ~g~d~~V~~~~~s----~d---G~------~~~s~~~~---~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          153 TLSDQQVEVMTFA----ED---GG------GKENQFLM---PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             SSTTCEEEEEEEC----TT---SC------EEEEEEEC---CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             cCCCCcEEEEEEC----CC---Cc------eeeeeccC---CCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence               8899999842    11   11      11111122   45567899999  6677888888899999998653

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=81.45  E-value=0.43  Score=40.33  Aligned_cols=78  Identities=10%  Similarity=0.103  Sum_probs=54.4

Q ss_pred             CCCeEEEE-ECCeEEEEeHHHhhccCCCCccccccCC---------Cce-eEcCCchhHHHHhcccccCcc------ccC
Q 012294           21 DSNIVTID-VGGQIFQTTKQTLALAGPKSLLSKLADS---------THR-FIDRDPELFSILLSLLRTGNL------PSK   83 (466)
Q Consensus        21 ~~~~V~Ln-VGG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~~-fiDRDp~~F~~IL~ylrtG~l------~~~   83 (466)
                      +...|+|. -.|+.|.+.+.+...   +..++.|+.+         +++ +-+.++.+++.|+.|++.-+-      .++
T Consensus        15 ~~~~v~L~SsDG~~F~V~~~~A~~---S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~   91 (112)
T 1vcb_B           15 DAMYVKLISSDGHEFIVKREHALT---SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIP   91 (112)
T ss_dssp             --CEEEEECTTSCEEEEEHHHHHT---SHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             CCCEEEEEcCCCCEEEECHHHHHH---hHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCC
Confidence            45689988 779999999997654   4588888874         124 668999999999999975321      110


Q ss_pred             C---CCcChHHHHHhhccccc
Q 012294           84 A---KAFDIEDLIEESKFYNI  101 (466)
Q Consensus        84 ~---~~~~~~~Ll~EA~f~~l  101 (466)
                      +   +...+.+|+.+|+|++|
T Consensus        92 ~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           92 EFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTC
T ss_pred             CcccCHHHHHHHHHHHHHhCc
Confidence            0   01234678889998875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.00  E-value=43  Score=32.61  Aligned_cols=210  Identities=10%  Similarity=0.062  Sum_probs=112.6

Q ss_pred             eeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce
Q 012294          200 ENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK  276 (466)
Q Consensus       200 vE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k  276 (466)
                      +.+.++.....+.+.+- .. ..+++..  ++.||..-.    ..+.|.++|+..       +..+.+-..  ....|..
T Consensus        55 I~~i~~~g~~~~~~~~~~~~-~~~l~~d~~~~~ly~~D~----~~~~I~r~~~~g-------~~~~~~~~~--~~~~p~g  120 (349)
T 3v64_C           55 IRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDV----TLDRILRANLNG-------SNVEEVVST--GLESPGG  120 (349)
T ss_dssp             EEEECTTSCCEEEEECSCSC-EEEEEEETTTTEEEEEET----TTTEEEEEETTS-------CSCEEEECS--SCSCCCE
T ss_pred             eEEEeCCCCeeEEeecCCCc-eEEEEEeccccEEEEEec----cCCceEEEecCC-------CCceEEEeC--CCCCccE
Confidence            34556666555554332 32 3336654  578998211    146899999987       211100000  0011223


Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEee-CceeEeeccccCC
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINS-GEVSYMDLRKLGD  355 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~-g~l~~~dlr~~~~  355 (466)
                      +..-..++.||++-.      ..+.|+++|+......--.......-.++++++.++.||..-... +.|+.+|+.--..
T Consensus       121 lavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          121 LAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             EEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEEecCCCeEEEEcC------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence            333335889998865      234799999876642222222223335678888888888776555 7788887753221


Q ss_pred             CCCeEEeccCCccccccccccceeEEEE--ECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIEC--HANQVFCGK--GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDM  431 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  431 (466)
                          ..+...  .+.      .--.|+.  .++.||++.  ++.|+++.-     +    |.      .|+-++..    
T Consensus       195 ----~~~~~~--~~~------~PnGla~d~~~~~lY~aD~~~~~I~~~~~-----d----G~------~~~~~~~~----  243 (349)
T 3v64_C          195 ----RIIADT--HLF------WPNGLTIDYAGRRMYWVDAKHHVIERANL-----D----GS------HRKAVISQ----  243 (349)
T ss_dssp             ----EESCCS--SCS------CEEEEEEETTTTEEEEEETTTTEEEEEET-----T----SC------SCEEEECS----
T ss_pred             ----EEEEEC--CCC------CcceEEEeCCCCEEEEEECCCCEEEEEeC-----C----CC------ceEEEEeC----
Confidence                112110  011      1224555  489999985  455665542     1    11      12222211    


Q ss_pred             CCCceEEEeeecceeEEEeeccceEEEec
Q 012294          432 GGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       432 ~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      ..+.-..|++-+++||++-.....|....
T Consensus       244 ~~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          244 GLPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             SCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence            13345566667788888877777666654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=80.05  E-value=19  Score=36.11  Aligned_cols=149  Identities=5%  Similarity=0.043  Sum_probs=84.5

Q ss_pred             EEE-ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccce
Q 012294          223 IGS-SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGN  301 (466)
Q Consensus       223 va~-l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~s  301 (466)
                      +++ -++.||+...    ..+.|-+||+.+       ++...+....   ..+. +.|.+-++.||++....+     ..
T Consensus       136 la~d~~g~lyv~d~----~~~~I~~id~~~-------g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~-----~~  195 (409)
T 3hrp_A          136 IAAVGNNTVLAYQR----DDPRVRLISVDD-------NKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGT-----HT  195 (409)
T ss_dssp             EEECSTTEEEEEET----TTTEEEEEETTT-------TEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTT-----CE
T ss_pred             EEEeCCCCEEEEec----CCCcEEEEECCC-------CEEEEeeccC---CCCc-eeEecCCCcEEEEecCCC-----ce
Confidence            555 3578999322    146799999997       2221110000   0122 556666778888876222     16


Q ss_pred             EEEEeCCCCeeeeEE---cC-CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccc
Q 012294          302 IKFWDIRSGNVAWEV---KD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF  377 (466)
Q Consensus       302 Ve~yDprt~~~vW~~---~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~  377 (466)
                      |-.||+.++...-..   .. ......+++++++++.||. +-.++.|+..|+..-.    -..+.. .. ...  ..+.
T Consensus       196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~----~~~~~~-~~-~~g--~~~~  266 (409)
T 3hrp_A          196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE----VTLIKQ-LE-LSG--SLGT  266 (409)
T ss_dssp             EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC----EEEEEE-CC-CCS--CCCC
T ss_pred             EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC----EEEEec-cc-ccC--CCCC
Confidence            999999877542222   12 2334467889998888997 5567889888876432    122211 00 000  1112


Q ss_pred             e--eEEEEE--CCEEEEEe--CCeEEEeE
Q 012294          378 G--CKIECH--ANQVFCGK--GGEIELWS  400 (466)
Q Consensus       378 ~--~~~~~~--~~~lf~~~--~~~~~v~~  400 (466)
                      .  +.|++.  ++.||++.  +..|.+|.
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~  295 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKIT  295 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            2  267776  58999985  45666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
d1nn7a_	105	d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus	8e-18
d3kvta_	103	d.42.1.2 (A:) akv3.1 voltage-gated potassium chann	3e-17
d1t1da_	100	d.42.1.2 (A:) Shaker potassium channel {California	9e-17

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (188), Expect = 8e-18
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 24  IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR-------FIDRDPELFSILLSLLR 76
           ++ ++V G  FQT + TL    P +LL                F DRDP++F  +L+  R
Sbjct: 1   LIVLNVSGTRFQTWQDTLE-RYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYR 59

Query: 77  TGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
           TG L    +   I    EE  F+ +   +I  
Sbjct: 60  TGKLH-YPRHECISAYDEELAFFGLIPEIIGD 90

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 23  NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR--------FIDRDPELFSILLSL 74
           N V I+VGG   +T K TL    P + LS+L +            F DR P +F+ +++ 
Sbjct: 2   NRVIINVGGIRHETYKATLK-KIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60

Query: 75  LRTGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
            R+G L             EE +F+ ++S  +  
Sbjct: 61  YRSGKLH-YPTDVCGPLFEEELEFWGLDSNQVEP 93

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 73.3 bits (180), Expect = 9e-17
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 25  VTIDVGGQIFQTTKQTLALAGPKSLLSKLADSTHR--------FIDRDPELFSILLSLLR 76
           V I+V G  F+T  +TL    P +LL                 F DR+   F  +L   +
Sbjct: 3   VVINVSGLRFETQLKTLN-QFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

Query: 77  TGNLPSKAKAFDIEDLIEESKFYNIESLLINS 108
           +G    +     ++   EE KFY +       
Sbjct: 62  SGGRLRRPVNVPLDVFSEEIKFYELGENAFER 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.87
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	99.86
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.86
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	99.83
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	99.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.59
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.06
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.01
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.61
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.02
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.01
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.84
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.6
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.53
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.53
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.43
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.38
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.32
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.26
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.18
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.11
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.07
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.07
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.03
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.77
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.47
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.2
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.97
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.67
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.63
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.57
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.55
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.54
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.29
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.95
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	94.87
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.31
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.27
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	94.01
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.95
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	93.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	93.55
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.15
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	92.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.38
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.08
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	89.91
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	89.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	85.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	84.13
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	83.67
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	80.61

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.9e-21  Score=181.00  Aligned_cols=221  Identities=14%  Similarity=0.204  Sum_probs=167.3

Q ss_pred             CCcEEEEcCCc-------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEeccc--CCCceeccceeeeeCC
Q 012294          142 YGTLHVSHGSK-------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATD--FSGLQVLDLENGYVKE  206 (466)
Q Consensus       142 ~g~lyva~GG~-------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~--~~g~~~l~svE~ydp~  206 (466)
                      +..||+ .||.       +++||     |.. ++|+.+|..|.++.    ++++||++||..  .++...++.++.|||.
T Consensus         4 g~~iyv-~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~   78 (288)
T d1zgka1           4 GRLIYT-AGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV----VGGLLYAVGGRNNSPDGNTDSSALDCYNPM   78 (288)
T ss_dssp             CCCEEE-ECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE----ETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEE-ECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEE----ECCEEEEEeCcccCCCCccccchhhhcccc
Confidence            467894 5653       57899     999 99999999998776    899999999932  1234568899999999


Q ss_pred             CCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce-----e
Q 012294          207 TLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK-----L  277 (466)
Q Consensus       207 t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k-----~  277 (466)
                      +++|+.+++|   |..++ +++++++||+ ||..+...++.+|+||+.+               +.|...+.+.     .
T Consensus        79 ~~~w~~~~~~p~~r~~~~-~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~r~~~  142 (288)
T d1zgka1          79 TNQWSPCAPMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPER---------------DEWHLVAPMLTRRIGV  142 (288)
T ss_dssp             TTEEEECCCCSSCCBTCE-EEEETTEEEEECCEETTEECCCEEEEETTT---------------TEEEECCCCSSCCBSC
T ss_pred             cccccccccccceeccee-ccccceeeEEecceecccccceeeeecccc---------------Cccccccccccccccc
Confidence            9999999998   66665 7899999999 7765666699999999999               4455555332     2


Q ss_pred             eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC-
Q 012294          278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-  355 (466)
Q Consensus       278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-  355 (466)
                      ......+.+|+.||.+... .+..++.|||.+++  |..... ...+...++...+..||..|+.++.-...++-.... 
T Consensus       143 ~~~~~~~~~~~~GG~~~~~-~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~  219 (288)
T d1zgka1         143 GVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE  219 (288)
T ss_dssp             EEEEETTEEEEECCBCSSC-BCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             eeeeeeecceEecCccccc-ccceEEEeeccccc--cccccccccccccccccceeeeEEEecCccccccccceeeeeec
Confidence            2345799999999987765 56689999999999  876654 444556677778888999888665532222222111 


Q ss_pred             CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294          356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG  393 (466)
Q Consensus       356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~  393 (466)
                      .+.|..+++    +..  +| .++.++.++|+||+.-|
T Consensus       220 ~~~~~~~~~----~p~--~r-~~~~~~~~~~~l~v~GG  250 (288)
T d1zgka1         220 TETWTFVAP----MKH--RR-SALGITVHQGRIYVLGG  250 (288)
T ss_dssp             TTEEEECCC----CSS--CC-BSCEEEEETTEEEEECC
T ss_pred             ceeeecccC----ccC--cc-cceEEEEECCEEEEEec
Confidence            678998887    553  66 78889999999999854

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.86  E-value=2.3e-22  Score=169.19  Aligned_cols=87  Identities=30%  Similarity=0.408  Sum_probs=77.8

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------Cc-eeEcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI   93 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll   93 (466)
                      +++|+|||||++|+|+++||.+ +|+|+|..+++.       ++ +||||||++|++||+|||+|++++ |++.+...|+
T Consensus         1 ~~rI~LNVGG~~F~t~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~-p~~~~~~~l~   78 (103)
T d3kvta_           1 ENRVIINVGGIRHETYKATLKK-IPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHY-PTDVCGPLFE   78 (103)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTT-SCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBCC-CSSSCHHHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhh-CccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCccc-ccccCHHHHH
Confidence            4789999999999999999998 899999999985       23 999999999999999999999997 6678899999


Q ss_pred             Hhhccccchh-hHHhhcC
Q 012294           94 EESKFYNIES-LLINSQS  110 (466)
Q Consensus        94 ~EA~f~~l~~-l~~~~~~  110 (466)
                      +||+||||++ +++.|+.
T Consensus        79 ~Ea~yygi~~~~l~~Cc~   96 (103)
T d3kvta_          79 EELEFWGLDSNQVEPCCW   96 (103)
T ss_dssp             HHHHHHTCCGGGBCGGGS
T ss_pred             HHHHHcCCCHHHHHHHhH
Confidence            9999999976 5666743

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-20  Score=178.01  Aligned_cols=226  Identities=15%  Similarity=0.180  Sum_probs=176.2

Q ss_pred             cccccCCCCCCCCCceeeecCCcEEEEcCCc------------eeeEe-----cCC-CCCCCccccceeeeeecccCCcE
Q 012294          122 KSLILPLNGRDSPSAIATTNYGTLHVSHGSK------------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGV  183 (466)
Q Consensus       122 ~va~l~~~~R~~~~a~~a~~~g~lyva~GG~------------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~l  183 (466)
                      .+.+|+ .+|..++  ++..++.||++ ||.            +++||     |.. ++|+.+|..+++++    +++++
T Consensus        33 ~~~~~p-~~R~~~~--~~~~~~~iyv~-GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~----~~~~i  104 (288)
T d1zgka1          33 RLADLQ-VPRSGLA--GCVVGGLLYAV-GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV----IDGHI  104 (288)
T ss_dssp             ECCCCS-SCCBSCE--EEEETTEEEEE-CCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE----ETTEE
T ss_pred             ECCCCC-CccceeE--EEEECCEEEEE-eCcccCCCCccccchhhhcccccccccccccccceecceeccc----cceee
Confidence            345677 7888887  77889999955 542            36788     988 99999999998887    99999


Q ss_pred             EEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccc
Q 012294          184 AAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIG  259 (466)
Q Consensus       184 YaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~  259 (466)
                      |++||  ..+...++.++.||+.+++|...+.+   |..++ +++.++++|+ ||.+....++.+++|||.+        
T Consensus       105 ~~~gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~--------  173 (288)
T d1zgka1         105 YAVGG--SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPER--------  173 (288)
T ss_dssp             EEECC--EETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTT--------
T ss_pred             EEecc--eecccccceeeeeccccCccccccccccccccce-eeeeeecceEecCcccccccceEEEeeccc--------
Confidence            99999  77888899999999999999999888   66666 6888999999 7776665689999999999        


Q ss_pred             ccccccCCceeecCcce-----eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCC
Q 012294          260 QNEIYGTDIESAIPATK-----LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLS  333 (466)
Q Consensus       260 ~~~~~~~~~w~~~~~~k-----~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~  333 (466)
                             +.|...+.+.     ......++.||+.||.++.. ...+...||+.+++  |+...+ -.+|...++...++
T Consensus       174 -------~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~-~~~~~~~~~~~~~~--~~~~~~~p~~r~~~~~~~~~~  243 (288)
T d1zgka1         174 -------NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETET--WTFVAPMKHRRSALGITVHQG  243 (288)
T ss_dssp             -------TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-BCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETT
T ss_pred             -------cccccccccccccccccccceeeeEEEecCccccc-cccceeeeeeccee--eecccCccCcccceEEEEECC
Confidence                   4455544321     23445799999999998865 56689999999999  999765 45666667777788


Q ss_pred             ceEEEEEeeCceeEeeccccCC-CCCeEEeccCCccccccccccceeEEEE
Q 012294          334 AIYKVGINSGEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIEC  383 (466)
Q Consensus       334 ~i~~v~~~~g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~  383 (466)
                      .||.+|+.++.-++.|+-...- .|.|..+.+    |..  +| +++.+|+
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~--~R-~~~~~~~  287 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR----MTS--GR-SGVGVAV  287 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE----CSS--CC-BSCEEEE
T ss_pred             EEEEEecCCCCeecceEEEEECCCCEEEECCC----CCC--Cc-EeEEEEE
Confidence            9999999777644333322221 588999988    763  66 7777664

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.4e-21  Score=164.92  Aligned_cols=83  Identities=30%  Similarity=0.490  Sum_probs=74.2

Q ss_pred             eEEEEECCeEEEEeHHHhhccCCCCccccccCC-------CceeEcCCchhHHHHhcccccCccccCCCCcChHHHHHhh
Q 012294           24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------THRFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEES   96 (466)
Q Consensus        24 ~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA   96 (466)
                      +|+|||||++|+|+++||++ +|+|+|..++..       ++|||||||.+|++||+|||+|++++ |++.+.+.|++||
T Consensus         1 iI~LNVGG~~f~t~~~TL~~-~p~s~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~-p~~~~~~~l~~Ea   78 (105)
T d1nn7a_           1 LIVLNVSGTRFQTWQDTLER-YPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHY-PRHECISAYDEEL   78 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHT-SCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCC-CTTSCHHHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhc-CCCCCccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCcccc-CCCccHHHHHHHH
Confidence            58999999999999999998 899999998864       23999999999999999999999998 5678899999999


Q ss_pred             ccccchhhH-Hhh
Q 012294           97 KFYNIESLL-INS  108 (466)
Q Consensus        97 ~f~~l~~l~-~~~  108 (466)
                      +||||+++. +.|
T Consensus        79 ~fygi~~~~l~~c   91 (105)
T d1nn7a_          79 AFFGLIPEIIGDC   91 (105)
T ss_dssp             HHHTCCSCCBCHH
T ss_pred             HHcCCCHHHHHHH
Confidence            999998753 444

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.83  E-value=2.2e-21  Score=162.24  Aligned_cols=81  Identities=28%  Similarity=0.432  Sum_probs=72.4

Q ss_pred             CeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------C-ceeEcCCchhHHHHhcccccC-ccccCCCCcChHHHH
Q 012294           23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------T-HRFIDRDPELFSILLSLLRTG-NLPSKAKAFDIEDLI   93 (466)
Q Consensus        23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~-~~fiDRDp~~F~~IL~ylrtG-~l~~~~~~~~~~~Ll   93 (466)
                      +.|+|||||++|+|+++||.+ +|+|+|++|++.       + +|||||||++|++||||||+| .+++ |++.+...|+
T Consensus         1 drI~LNVGG~~f~t~~~tL~~-~p~s~l~~l~~~~~~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~~-~~~~~~~~l~   78 (100)
T d1t1da_           1 ERVVINVSGLRFETQLKTLNQ-FPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRR-PVNVPLDVFS   78 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHT-STTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCC-CTTSCHHHHH
T ss_pred             CeEEEEECCEEEEEeHHHHhh-CCCchhHHHHhCCCcCCCCCCeEEEecCHHHHHHHHHHHhcCCCcCC-CCcccHHHHH
Confidence            579999999999999999998 999999999873       2 399999999999999999984 6665 6788899999


Q ss_pred             HhhccccchhhH
Q 012294           94 EESKFYNIESLL  105 (466)
Q Consensus        94 ~EA~f~~l~~l~  105 (466)
                      +||+||||++..
T Consensus        79 ~Ea~y~gi~~~~   90 (100)
T d1t1da_          79 EEIKFYELGENA   90 (100)
T ss_dssp             HHHHHTTCCHHH
T ss_pred             HHHHHcCCCHHH
Confidence            999999998853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.70  E-value=1.6e-16  Score=156.37  Aligned_cols=254  Identities=13%  Similarity=0.053  Sum_probs=153.9

Q ss_pred             ccccCCCCCCCCCceeeecCCcEEEEcCC-------------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcE
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLHVSHGS-------------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGV  183 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~lyva~GG-------------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~l  183 (466)
                      ..+++ ..+..+.  +...+|+||+.+|-             .++.||     |.. +.|.++|..++... ....+++|
T Consensus        14 ~~~~p-~~~~~~a--~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~-~~~~~g~i   89 (387)
T d1k3ia3          14 TIDLP-IVPAAAA--IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI-SMDGNGQI   89 (387)
T ss_dssp             EEECS-SCCSEEE--EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE-EECTTSCE
T ss_pred             cCCCC-ccccEEE--EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEE-EEecCCcE
Confidence            34555 4444322  34458999966441             135798     988 77888877654432 22368899


Q ss_pred             EEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-Eec-CCCcCCCeeEEEecCC--CCccc
Q 012294          184 AAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFE-SGRRNSNSIMVYDINS--LKPVN  256 (466)
Q Consensus       184 YaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~-~g~~~l~sVE~YDp~t--~~~~~  256 (466)
                      |++||  .+.    ++++.|||.+++|+..++|   |..+++++..|++||+ ||. .+...++++|+|||.+  |+.++
T Consensus        90 ~v~Gg--~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          90 VVTGG--NDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             EEECS--SST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             EEeec--CCC----cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            99998  543    5789999999999999999   7777644444789999 654 3444589999999998  66655


Q ss_pred             ccccccc-------------------------c--------------cCCceeecCccee--------------eEEeeC
Q 012294          257 EIGQNEI-------------------------Y--------------GTDIESAIPATKL--------------RWVSSY  283 (466)
Q Consensus       257 ~~~~~~~-------------------------~--------------~~~~w~~~~~~k~--------------~~~~~~  283 (466)
                      ++.....                         |              ....|...+.+..              .....+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (387)
T d1k3ia3         164 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK  243 (387)
T ss_dssp             TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred             CCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccC
Confidence            4432210                         0              0111221111100              011246


Q ss_pred             CeEEEEeecCCCCcc-----cceEEEEeCCCCeeeeEEcCC-cccccceeeec-CCCceEEEEEeeCce--------eEe
Q 012294          284 NLLLASGSHSDISKV-----TGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSD-NLSAIYKVGINSGEV--------SYM  348 (466)
Q Consensus       284 ~~Lyv~Gg~~g~~~~-----~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~-~~~~i~~v~~~~g~l--------~~~  348 (466)
                      +.+|++||+......     ...++.+++....-.|+..++ -.+|...++.. .++.||.+|+.++.-        .-+
T Consensus       244 g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~v  323 (387)
T d1k3ia3         244 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP  323 (387)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred             CceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceE
Confidence            899999996543321     123555666666544666554 23344333333 355699999954221        001


Q ss_pred             eccccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEEEEeCC
Q 012294          349 DLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVFCGKGG  394 (466)
Q Consensus       349 dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~~~~  394 (466)
                      ++=..+ .+.|..+++    |..  +| .++..++.  +|+||+.-|+
T Consensus       324 e~Ydp~-~~~W~~~~~----~~~--~R-~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         324 EIYVPE-QDTFYKQNP----NSI--VR-VYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEEGG-GTEEEECCC----CSS--CC-CTTEEEEECTTSCEEEEECC
T ss_pred             EEEECC-CCeEEECCC----CCC--cc-cceEEEEECCCCEEEEEeCC
Confidence            111122 688999988    884  77 67776666  8999999774

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.59  E-value=2.8e-15  Score=147.43  Aligned_cols=209  Identities=12%  Similarity=0.053  Sum_probs=131.1

Q ss_pred             cCC-CCCCCccccceeeeeecccCCcEEEEecccC----CCceeccceeeeeCCCCceeecCCC---C--CceeEEEEEC
Q 012294          158 WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDF----SGLQVLDLENGYVKETLNWENVTRS---S--STVQAIGSSD  227 (466)
Q Consensus       158 W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~----~g~~~l~svE~ydp~t~~W~~va~M---r--~~~~Ava~l~  227 (466)
                      |+. .+++..|.++.++.    .+++||++||...    .....+..++.|||.+++|+..++|   |  ..++++...+
T Consensus        11 W~~~~~~p~~~~~~a~~~----~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~   86 (387)
T d1k3ia3          11 WGPTIDLPIVPAAAAIEP----TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN   86 (387)
T ss_dssp             EEEEEECSSCCSEEEEET----TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred             cCCcCCCCccccEEEEEe----eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC
Confidence            887 78888777665554    7999999999321    1223466789999999999988776   3  2233234457


Q ss_pred             CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee------EEeeCCeEEEEeecCCCCcccc
Q 012294          228 KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR------WVSSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       228 ~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~------~~~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      ++||+ |+.+    .+++++|||.+               +.|+..+.|...      .+..+|.||++||.+.....++
T Consensus        87 g~i~v~Gg~~----~~~~~~yd~~~---------------~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          87 GQIVVTGGND----AKKTSLYDSSS---------------DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEK  147 (387)
T ss_dssp             SCEEEECSSS----TTCEEEEEGGG---------------TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             CcEEEeecCC----CcceeEecCcc---------------CcccccccccccccccceeeecCCceeeeccccccccccc
Confidence            78999 6553    46899999999               667777766432      2235789999999766656778


Q ss_pred             eEEEEeCCCCeeeeEEcCCcc-c----ccceeeecCCCceEEEEEeeCceeEeeccc-------cCCCCCeEEeccCCcc
Q 012294          301 NIKFWDIRSGNVAWEVKDEVD-C----FSDVTVSDNLSAIYKVGINSGEVSYMDLRK-------LGDSSEWICLGDGRKM  368 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~~d-~----~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~-------~~~~~~W~~~~~~~~~  368 (466)
                      ++|+|||.+++  |+.....- .    .....+...+..+|.++..+|.+++..-..       .+ .+.|.........
T Consensus       148 ~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~  224 (387)
T d1k3ia3         148 NGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSN  224 (387)
T ss_dssp             CEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST-TCEEEEEEECEET
T ss_pred             eeeeecCCCCc--eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc-cCcEeeccccccC
Confidence            99999999999  99865410 0    001112223445555666666665433211       12 4567666553221


Q ss_pred             --ccccccc-cceeEEEEECCEEEEEeC
Q 012294          369 --VNGKRKE-GFGCKIECHANQVFCGKG  393 (466)
Q Consensus       369 --m~~~~~~-~~~~~~~~~~~~lf~~~~  393 (466)
                        ... ... +..+-+...++++|+.-|
T Consensus       225 ~~~~~-~~~~~~~~~~~~~~g~v~v~GG  251 (387)
T d1k3ia3         225 RGVAP-DAMCGNAVMYDAVKGKILTFGG  251 (387)
T ss_dssp             TEECC-CCBTCEEEEEETTTTEEEEECC
T ss_pred             cccCc-ccccccEEEeeccCCceEEEEe
Confidence              111 111 122233345788888766

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.6e-11  Score=103.34  Aligned_cols=82  Identities=27%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             CeEEEEECCeEEEEeHHHhhccCCCCccccccCC--Cc-eeEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhccc
Q 012294           23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFY   99 (466)
Q Consensus        23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~f~   99 (466)
                      -||+|.|+|+.|.+||.+|+++  ++||++||++  ++ .+.+.+|+.|+.+|+|+|||++.+.  ..++.+|+..|.+|
T Consensus        29 ~Dv~l~v~~~~~~aHk~vLaa~--S~~F~~lf~~~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~--~~~v~~ll~~A~~l  104 (121)
T d1buoa_          29 CDVVIMVDSQEFHAHRTVLACT--SKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAK--AEDLDDLLYAAEIL  104 (121)
T ss_dssp             CCEEEEESSCEEEECHHHHHHH--CHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCC--GGGHHHHHHHHHHH
T ss_pred             EeEEEEECCEEEEEEHHHhccc--ChhhhhhccCccceeecCCCCHHHHHHHHHheEccccCCc--HHHHHHHHHHHHHh
Confidence            5899999999999999999984  5699999986  33 3667999999999999999999874  46889999999999


Q ss_pred             cchhhHHhh
Q 012294          100 NIESLLINS  108 (466)
Q Consensus       100 ~l~~l~~~~  108 (466)
                      +++.+.+.|
T Consensus       105 ~~~~L~~~C  113 (121)
T d1buoa_         105 EIEYLEEQC  113 (121)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999998

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.9e-11  Score=100.84  Aligned_cols=84  Identities=20%  Similarity=0.268  Sum_probs=73.0

Q ss_pred             CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC----Cc----eeEcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294           22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS----TH----RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI   93 (466)
Q Consensus        22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~----~~----~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll   93 (466)
                      --||+|.|+|+.|.+||.+|+++  ++||++||.+    +.    ...|.+|+.|+.||+|+|||++.++  ..++..++
T Consensus        25 ~~Dv~l~v~~~~~~~Hk~vLa~~--S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~--~~~v~~ll  100 (122)
T d1r29a_          25 LTDVVIVVSREQFRAHKTVLMAC--SGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLR--EGNIMAVM  100 (122)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHH--CHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCC--TTTHHHHH
T ss_pred             CeEEEEEECCEEEEEehHHhhhC--CHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCc--hhhHHHHH
Confidence            35899999999999999999984  5599999975    11    2357999999999999999999875  56899999


Q ss_pred             HhhccccchhhHHhhc
Q 012294           94 EESKFYNIESLLINSQ  109 (466)
Q Consensus        94 ~EA~f~~l~~l~~~~~  109 (466)
                      ..|.+|+|+.+++.|.
T Consensus       101 ~~A~~l~i~~L~~~C~  116 (122)
T d1r29a_         101 ATAMYLQMEHVVDTCR  116 (122)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCcHHHHHHHH
Confidence            9999999999999983

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.61  E-value=2.6e-05  Score=73.59  Aligned_cols=289  Identities=10%  Similarity=0.048  Sum_probs=162.7

Q ss_pred             ccccCCCCCCCCCceeeecCCcEE-EEcCCceeeEe-cCCCCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccc
Q 012294          123 SLILPLNGRDSPSAIATTNYGTLH-VSHGSKITSFD-WSMRKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDL  199 (466)
Q Consensus       123 va~l~~~~R~~~~a~~a~~~g~ly-va~GG~ve~YD-W~~a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~s  199 (466)
                      .+++|...|..+..+++.++|..+ ++.|+.+-.|| ...........+-..+.++.+. ++++.|.|+  .+|     +
T Consensus         9 ~~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~--~dg-----~   81 (311)
T d1nr0a1           9 FPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD--VHG-----N   81 (311)
T ss_dssp             ECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----E
T ss_pred             ccCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccc--cCc-----e
Confidence            456665677766656677766443 23444454555 2222222222223456666554 567888888  665     4


Q ss_pred             eeeeeCCCCceeecCCC---CCceeEEEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc
Q 012294          200 ENGYVKETLNWENVTRS---SSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA  274 (466)
Q Consensus       200 vE~ydp~t~~W~~va~M---r~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~  274 (466)
                      +..||..+.+......+   ...+.+++... +..++ ++.+.   ...+.+||.++.+++..+....     .    ..
T Consensus        82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~~~~~~~~l~~h~-----~----~v  149 (311)
T d1nr0a1          82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTSNGNLTGQA-----R----AM  149 (311)
T ss_dssp             EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEEETTTCCBCBCCCCCS-----S----CE
T ss_pred             EeeeeeeccccccccccccccCccccccccccccccccccccc---cccccccccccccccccccccc-----c----cc
Confidence            66778777765433333   22333355443 44444 55422   3457789988855544432211     0    12


Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+.|.+-++.++++|+.||      .|.+||.+++++.....++...+..+..++++..| ..|+.+|.+.+-|++...
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~------~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l-~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDN------TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF-ASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTS------CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCC
T ss_pred             ccccccccceeeeccccccc------ccccccccccccccccccccccccccccCcccccc-cccccccccccccccccc
Confidence            34456665667788888544      79999999999999998887778888999987764 477889999999988754


Q ss_pred             CCCCeEEeccCCcccccccccccee-EEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294          355 DSSEWICLGDGRKMVNGKRKEGFGC-KIEC-HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD  430 (466)
Q Consensus       355 ~~~~W~~~~~~~~~m~~~~~~~~~~-~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  430 (466)
                      .  ... +........+  .. ..+ .++. .+++.+++  .++.|.||.--     .        .++.+. +-.+.  
T Consensus       223 ~--~~~-~~~~~~~~~~--h~-~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~-----t--------~~~~~~-l~~~~--  280 (311)
T d1nr0a1         223 K--TGV-FEDDSLKNVA--HS-GSVFGLTWSPDGTKIASASADKTIKIWNVA-----T--------LKVEKT-IPVGT--  280 (311)
T ss_dssp             E--EEE-CBCTTSSSCS--SS-SCEEEEEECTTSSEEEEEETTSEEEEEETT-----T--------TEEEEE-EECCS--
T ss_pred             c--ccc-cccccccccc--cc-ccccccccCCCCCEEEEEeCCCeEEEEECC-----C--------CcEEEE-EECCC--
Confidence            2  011 1110000000  01 111 1222 24555554  46779999731     1        112121 11110  


Q ss_pred             CCCCceEEEeeecceeEEEeeccceEEEec
Q 012294          431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      .....++.+..-+++|++. .....|-+|+
T Consensus       281 ~~~~~~~~~~~~~~~l~s~-s~dG~i~~wd  309 (311)
T d1nr0a1         281 RIEDQQLGIIWTKQALVSI-SANGFINFVN  309 (311)
T ss_dssp             SGGGCEEEEEECSSCEEEE-ETTCCEEEEE
T ss_pred             CccceEEEEEecCCEEEEE-ECCCEEEEEe
Confidence            1123467788888877655 4567889997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=0.004  Score=55.69  Aligned_cols=150  Identities=17%  Similarity=0.234  Sum_probs=90.5

Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCe
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW  359 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W  359 (466)
                      ...++..+++|+.||      +|.+||.++++++.....+......+.  .++. ++..|+.+|.+.+-|++..+.   .
T Consensus       183 ~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~s~s~d~~i~iwd~~~~~~---~  250 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLTGHQSLTSGME--LKDN-ILVSGNADSTVKIWDIKTGQC---L  250 (342)
T ss_dssp             EEECSSEEEEEETTS------CEEEEETTTCCEEEEECCCCSCEEEEE--EETT-EEEEEETTSCEEEEETTTCCE---E
T ss_pred             ccCCCCEEEEEeCCC------eEEEeecccceeeeEecccccceeEEe--cCCC-EEEEEcCCCEEEEEecccccc---c
Confidence            345677778888554      799999999999999988865554443  4444 456888999999999887542   1


Q ss_pred             EEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEE
Q 012294          360 ICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITN  438 (466)
Q Consensus       360 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~  438 (466)
                      ..+..    ..  .....-..++..++.++++ .++.|.||.--     .        .++.|. +.........+.|..
T Consensus       251 ~~~~~----~~--~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~-----t--------g~~i~~-~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         251 QTLQG----PN--KHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-----T--------GEFIRN-LVTLESGGSGGVVWR  310 (342)
T ss_dssp             EEECS----TT--SCSSCEEEEEECSSEEEEEETTSEEEEEETT-----T--------CCEEEE-EEECTTGGGTCEEEE
T ss_pred             ccccc----cc--eeeeceeecccCCCeeEEEcCCCEEEEEECC-----C--------CCEEEE-EecccCCCCCCCEEE
Confidence            11221    11  0111223344445554443 67889999632     1        111122 211112234567999


Q ss_pred             EeeecceeEEEeeccce-----EEEecc
Q 012294          439 LSFGGNKMFVTRKGQQT-----VEVWQS  461 (466)
Q Consensus       439 ~~~gg~r~f~~~~~~~~-----~~vw~~  461 (466)
                      +++--|+.+++=-..+|     +.||+=
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            99988877765443333     888863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.0021  Score=56.19  Aligned_cols=266  Identities=14%  Similarity=0.144  Sum_probs=133.9

Q ss_pred             ecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS  216 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M  216 (466)
                      .+++...+.++  |.+..||... ....+.+.+-+.+.++.+ ++++.+.|+  .++.     +..++............
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~-~~~~l~s~s--~D~~-----i~~~~~~~~~~~~~~~~   93 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGS--SDST-----VRVWDVNTGEMLNTLIH   93 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEE--TTSC-----EEEEESSSCCEEEEECC
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec-ccceeeccc--cccc-----ccccccccccccccccc
Confidence            35666553322  3455655332 222222333344555544 788888888  6653     44556555554433333


Q ss_pred             -CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          217 -SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       217 -r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                       .....+.....+.+.++..     ...+..||..+.+.........   ..      ..........+....+++.   
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~------~~~v~~~~~~~~~~~~~s~---  156 (293)
T d1p22a2          94 HCEAVLHLRFNNGMMVTCSK-----DRSIAVWDMASPTDITLRRVLV---GH------RAAVNVVDFDDKYIVSASG---  156 (293)
T ss_dssp             CCSCEEEEECCTTEEEEEET-----TSCEEEEECSSSSCCEEEEEEC---CC------SSCEEEEEEETTEEEEEET---
T ss_pred             cccccccccccccceeeccc-----ccceeEeecccccccccccccc---cc------ccccccceecccccccccC---
Confidence             2222212333344444433     3456778887722111111000   00      1111222222333344442   


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                         .++|..||.++++++.....+......+..  ++. .+..+..+|.+.+-|+++...    +....      .  ..
T Consensus       157 ---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~------~--~~  218 (293)
T d1p22a2         157 ---DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIECGAC----LRVLE------G--HE  218 (293)
T ss_dssp             ---TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTCCE----EEEEC------C--CS
T ss_pred             ---CCceeeecCCCCcEEEEEcccccccccccC--CCC-eEEEecCCCEEEEEeccccee----eeeec------c--cc
Confidence               458999999999999998877544443333  333 345777999999999887442    21111      0  11


Q ss_pred             cceeEEEEECC-EEEE-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeecc
Q 012294          376 GFGCKIECHAN-QVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQ  453 (466)
Q Consensus       376 ~~~~~~~~~~~-~lf~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~  453 (466)
                       ..+.....++ .|++ +.++.|.||.-.......     .......-+.+-+     ..+.|+.+++-|. +++|=.+-
T Consensus       219 -~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~-----H~~~V~~v~~d~~-~l~s~s~D  286 (293)
T d1p22a2         219 -ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-----APAGTLCLRTLVE-----HSGRVFRLQFDEF-QIVSSSHD  286 (293)
T ss_dssp             -SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-----SCTTTTEEEEECC-----CSSCCCCEEECSS-CEEECCSS
T ss_pred             -eeeeeccccceEEEEEcCCCEEEEEECCCCcccc-----ccCCceeeEEecC-----CCCCEEEEEEcCC-EEEEEecC
Confidence             1112222333 3333 367889999753221111     1111111122222     3567999999775 46666666


Q ss_pred             ceEEEec
Q 012294          454 QTVEVWQ  460 (466)
Q Consensus       454 ~~~~vw~  460 (466)
                      ..|-||+
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            8899996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.94  E-value=0.006  Score=54.82  Aligned_cols=144  Identities=15%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE
Q 012294          281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI  360 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~  360 (466)
                      ...+.++++|..+      ++|.+||.++++++.++.+|.+....++.++++.. +.+|+.+|.+.+-|++....   -.
T Consensus       193 ~~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s~d~~i~~~~~~~~~~---~~  262 (340)
T d1tbga_         193 APDTRLFVSGACD------ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQE---LM  262 (340)
T ss_dssp             CTTSSEEEEEETT------TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEE---EE
T ss_pred             ccccceeEEeecC------ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeeccccc---cc
Confidence            3466677777744      47999999999999999988877778888887765 45788999999999987541   11


Q ss_pred             EeccCCccccccccccceeEEEEE--CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceE
Q 012294          361 CLGDGRKMVNGKRKEGFGCKIECH--ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKIT  437 (466)
Q Consensus       361 ~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~  437 (466)
                      ....    ...  .. .-..++..  +..|+++ .++.|.||.-.    ..     ..-. .++    +     ..+.|+
T Consensus       263 ~~~~----~~~--~~-~i~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~-----~~~~-~~~----~-----H~~~V~  316 (340)
T d1tbga_         263 TYSH----DNI--IC-GITSVSFSKSGRLLLAGYDDFNCNVWDAL----KA-----DRAG-VLA----G-----HDNRVS  316 (340)
T ss_dssp             EECC----TTC--CS-CEEEEEECSSSCEEEEEETTSCEEEEETT----TC-----CEEE-EEC----C-----CSSCEE
T ss_pred             cccc----ccc--cC-ceEEEEECCCCCEEEEEECCCEEEEEECC----CC-----cEEE-EEc----C-----CCCCEE
Confidence            1111    110  11 11122222  3344443 57889999742    11     1111 112    2     356899


Q ss_pred             EEeeecc-eeEEEeeccceEEEec
Q 012294          438 NLSFGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       438 ~~~~gg~-r~f~~~~~~~~~~vw~  460 (466)
                      .+++--| ++++|=.+-..|-||.
T Consensus       317 ~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeCCCCEEEEEccCCEEEEeC
Confidence            9998532 3445444456689995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=0.0044  Score=55.72  Aligned_cols=141  Identities=12%  Similarity=0.208  Sum_probs=86.7

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      .+.++++|+.      .++|.+||.+++..+.....|......+..+  +. .+..++.+|.+.+-|++....    ..-
T Consensus       212 ~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~----~~~  278 (355)
T d1nexb2         212 ERKRCISASM------DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDYSR----KFS  278 (355)
T ss_dssp             TTTEEEEEET------TSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS-EEEEECTTSEEEEEETTTCCE----EEE
T ss_pred             cceeeecccc------cceEEeeeccccccccccccccccccccccc--cc-eeeeeecccccccccccccce----ecc
Confidence            3444455553      3479999999999999999887666655554  33 445778999999999987542    111


Q ss_pred             ccCCccccccccccceeEEEEECCEEE-EEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee
Q 012294          363 GDGRKMVNGKRKEGFGCKIECHANQVF-CGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF  441 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~~~~~lf-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~  441 (466)
                      ....       .. ........+++++ ++.++.|-||.=-     .        .++.+..+.+     ..+.|..+++
T Consensus       279 ~~~~-------~~-~~~~~~~~~~~~l~~g~d~~i~vwd~~-----t--------g~~~~~~~~~-----~~~~V~~v~~  332 (355)
T d1nexb2         279 YHHT-------NL-SAITTFYVSDNILVSGSENQFNIYNLR-----S--------GKLVHANILK-----DADQIWSVNF  332 (355)
T ss_dssp             EECT-------TC-CCCCEEEECSSEEEEEETTEEEEEETT-----T--------CCBCCSCTTT-----TCSEEEEEEE
T ss_pred             cccC-------Cc-eEEEEEcCCCCEEEEEeCCEEEEEECC-----C--------CCEEEEEecC-----CCCCEEEEEE
Confidence            1100       11 2222233344444 4477889999631     1        1122333333     3568999999


Q ss_pred             ecceeEEEee-ccc-eEEEeccC
Q 012294          442 GGNKMFVTRK-GQQ-TVEVWQSS  462 (466)
Q Consensus       442 gg~r~f~~~~-~~~-~~~vw~~~  462 (466)
                      =|++|+++=. |-+ -+.+|+-|
T Consensus       333 ~~~~~~~~~s~dg~~~l~~~dfs  355 (355)
T d1nexb2         333 KGKTLVAAVEKDGQSFLEILDFS  355 (355)
T ss_dssp             ETTEEEEEEESSSCEEEEEEECC
T ss_pred             cCCeEEEEEECCCcEEEEEEeCC
Confidence            9999987643 433 47888753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.0051  Score=57.05  Aligned_cols=261  Identities=15%  Similarity=0.173  Sum_probs=138.4

Q ss_pred             eeeecCCcEEEEcC-CceeeEecCC-CCCCCc-----cccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCC
Q 012294          137 IATTNYGTLHVSHG-SKITSFDWSM-RKKSTI-----LTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETL  208 (466)
Q Consensus       137 ~~a~~~g~lyva~G-G~ve~YDW~~-a~m~~~-----R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~  208 (466)
                      ++..+++...+.++ |.+..||+.. ......     ..+-..+.++++. ++...++|+  .+|     ++..||....
T Consensus        57 v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~--~dg-----~i~iwd~~~~  129 (337)
T d1gxra_          57 VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG--EAS-----TLSIWDLAAP  129 (337)
T ss_dssp             EEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE--SSS-----EEEEEECCCC
T ss_pred             EEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee--ccc-----cccccccccc
Confidence            34455665543432 4566677544 211111     1122345555565 557777887  555     3556676655


Q ss_pred             ceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC
Q 012294          209 NWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY  283 (466)
Q Consensus       209 ~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~  283 (466)
                      +......+   ...+..++.. ++.+.+ ++.     ...|..||..+.++........     .    ....+.+. .+
T Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~~~~~~~~~~~~~~~~-----~----~v~~l~~s-~~  194 (337)
T d1gxra_         130 TPRIKAELTSSAPACYALAISPDSKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHT-----D----GASCIDIS-ND  194 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCS-----S----CEEEEEEC-TT
T ss_pred             cccccccccccccccccccccccccccccccc-----cccccccccccccccccccccc-----c----cccccccc-cc
Confidence            54433333   2222223443 334555 544     3568899988833222211100     0    11223343 34


Q ss_pred             CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEec
Q 012294          284 NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLG  363 (466)
Q Consensus       284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~  363 (466)
                      +..+++|+.      .++|.+||.++++.+.+.. +.+....+..++++..|+ ++..+|.+.+-|+++.+.   .....
T Consensus       195 ~~~~~~~~~------d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~-~~~~d~~i~i~d~~~~~~---~~~~~  263 (337)
T d1gxra_         195 GTKLWTGGL------DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLA-VGMESSNVEVLHVNKPDK---YQLHL  263 (337)
T ss_dssp             SSEEEEEET------TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEE-EEETTSCEEEEETTSSCE---EEECC
T ss_pred             ccccccccc------cccccccccccceeecccc-cccceEEEEEcccccccc-eecccccccccccccccc---ccccc
Confidence            555666664      3479999999999886653 444556677788777654 788999999999987542   11111


Q ss_pred             cCCccccccccccceeEEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEe
Q 012294          364 DGRKMVNGKRKEGFGCKIEC-HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLS  440 (466)
Q Consensus       364 ~~~~~m~~~~~~~~~~~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~  440 (466)
                      .         .. .-..++. .+|+.+++  .++.|.+|.-.     .       .+.++..        ...+.|.+++
T Consensus       264 ~---------~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~-----~-------~~~~~~~--------~~~~~v~~~~  313 (337)
T d1gxra_         264 H---------ES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTP-----Y-------GASIFQS--------KESSSVLSCD  313 (337)
T ss_dssp             C---------SS-CEEEEEECTTSSEEEEEETTSEEEEEETT-----T-------CCEEEEE--------ECSSCEEEEE
T ss_pred             c---------cc-ccceEEECCCCCEEEEEeCCCeEEEEECC-----C-------CCEEEEc--------cCCCCEEEEE
Confidence            1         11 1112222 24444443  56789999642     1       1222111        1345788888


Q ss_pred             eecc-eeEEEeeccceEEEec
Q 012294          441 FGGN-KMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       441 ~gg~-r~f~~~~~~~~~~vw~  460 (466)
                      |=-| +++++=.+...|-||+
T Consensus       314 ~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         314 ISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             ECTTSCEEEEEETTSCEEEEE
T ss_pred             EeCCCCEEEEEeCCCeEEEEE
Confidence            8532 4555545556789997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=0.0021  Score=59.97  Aligned_cols=187  Identities=12%  Similarity=0.132  Sum_probs=103.8

Q ss_pred             ecCCcEEEEcCC-c---eeeEecCC-CCCCCccccceeeeeeccc-CCc-EEEEecccCCCceeccceeeeeCCCCceee
Q 012294          140 TNYGTLHVSHGS-K---ITSFDWSM-RKKSTILTHFTAVDSLLAL-SPG-VAAAGATDFSGLQVLDLENGYVKETLNWEN  212 (466)
Q Consensus       140 ~~~g~lyva~GG-~---ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~-lYaiGG~~~~g~~~l~svE~ydp~t~~W~~  212 (466)
                      .+++..+++.|. .   +..+||.. ....+...+...+.++.+. ++. +++.|+  .+|.     +..||..+.+-..
T Consensus       111 s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs--~d~~-----i~i~d~~~~~~~~  183 (311)
T d1nr0a1         111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDNT-----VAIFEGPPFKFKS  183 (311)
T ss_dssp             CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTSC-----EEEEETTTBEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeecccc--cccc-----ccccccccccccc
Confidence            345655545442 2   45677766 4444444344445555554 233 567777  5553     4456665543222


Q ss_pred             cCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccc--cCCceeecCcceeeEEeeCCeEE
Q 012294          213 VTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIY--GTDIESAIPATKLRWVSSYNLLL  287 (466)
Q Consensus       213 va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~--~~~~w~~~~~~k~~~~~~~~~Ly  287 (466)
                      .-.- ...+.+++.. ++.+++ |+.     ...|-.||..+.+.+..+......  +...    +...+.|.+ ++.++
T Consensus       184 ~~~~~~~~i~~v~~~p~~~~l~~~~~-----d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~----~V~~~~~s~-~~~~l  253 (311)
T d1nr0a1         184 TFGEHTKFVHSVRYNPDGSLFASTGG-----DGTIVLYNGVDGTKTGVFEDDSLKNVAHSG----SVFGLTWSP-DGTKI  253 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTCCEEEECBCTTSSSCSSSS----CEEEEEECT-TSSEE
T ss_pred             ccccccccccccccCccccccccccc-----cccccccccccccccccccccccccccccc----cccccccCC-CCCEE
Confidence            1111 2333334544 344445 655     356889999986665555432210  1111    123445544 45666


Q ss_pred             EEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc-cccceeeecCCCceEEEEEeeCceeEeec
Q 012294          288 ASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD-CFSDVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       288 v~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      ++|+.||      +|.+||.++++++.++..+.. ....+.+...+..|+ .++.+|.|.+-|+
T Consensus       254 ~tgs~Dg------~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~-s~s~dG~i~~wd~  310 (311)
T d1nr0a1         254 ASASADK------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGFINFVNP  310 (311)
T ss_dssp             EEEETTS------EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE-EEETTCCEEEEET
T ss_pred             EEEeCCC------eEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEE-EEECCCEEEEEeC
Confidence            6777544      799999999999887765521 122345666677766 6678999988775

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.60  E-value=0.0038  Score=55.58  Aligned_cols=144  Identities=13%  Similarity=0.039  Sum_probs=92.6

Q ss_pred             cEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEEC-C-eEEE-EecCCCcCCCeeEEEecCCCCccccc
Q 012294          182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSD-K-HLFV-SFESGRRNSNSIMVYDINSLKPVNEI  258 (466)
Q Consensus       182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~-~-~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~  258 (466)
                      .+||.+.  .++     ++..+|+.+.+....-+......++++.. | +||+ +..     .+.|.+||..+.+.+..+
T Consensus         3 ~~yV~~~--~~~-----~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~-----~~~i~v~d~~t~~~~~~~   70 (301)
T d1l0qa2           3 FAYIANS--ESD-----NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVIATV   70 (301)
T ss_dssp             EEEEEET--TTT-----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEEEEE
T ss_pred             EEEEEEC--CCC-----EEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCceeeee
Confidence            4677766  333     57788999887664434422333466663 3 5998 433     457999999996555444


Q ss_pred             cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEE
Q 012294          259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKV  338 (466)
Q Consensus       259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v  338 (466)
                      ....          .+..+.+..-++.+++.+..      ...+.+||..+++.++....+. ....+.+++++..++..
T Consensus        71 ~~~~----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          71 PAGS----------SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             ECSS----------SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             eccc----------cccccccccccccccccccc------cceeeecccccceeeeeccccc-cceEEEeecCCCeeeee
Confidence            3211          12334444455566665542      3468999999999888876553 22456788899998877


Q ss_pred             EEeeCceeEeeccccC
Q 012294          339 GINSGEVSYMDLRKLG  354 (466)
Q Consensus       339 ~~~~g~l~~~dlr~~~  354 (466)
                      +..++.+.+.|+....
T Consensus       134 ~~~~~~~~~~~~~~~~  149 (301)
T d1l0qa2         134 NNGDKTVSVINTVTKA  149 (301)
T ss_dssp             ETTTTEEEEEETTTTE
T ss_pred             eccccceeeeeccccc
Confidence            7778888877776543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.021  Score=49.90  Aligned_cols=256  Identities=14%  Similarity=0.220  Sum_probs=131.2

Q ss_pred             cCC-CCCC-Cccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC-eEEE
Q 012294          158 WSM-RKKS-TILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK-HLFV  232 (466)
Q Consensus       158 W~~-a~m~-~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~-~IYa  232 (466)
                      |.+ .+.. +.+.+-+.|.++++- ++.+.|.|+  .||     ++-.||..+.+....-.- ...+.+++...+ .+.+
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s--~Dg-----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~   75 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSAS--EDA-----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA   75 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEE--SSS-----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEe--CCC-----eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccc
Confidence            655 3322 223344567777664 467778887  665     355667665543221111 233333444443 4444


Q ss_pred             -EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe
Q 012294          233 -SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN  311 (466)
Q Consensus       233 -Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~  311 (466)
                       +..     ...+..+|..+.+.........         .......+.+-++. +++++.      .+.+.+||.++++
T Consensus        76 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~------d~~~~~~~~~~~~  134 (317)
T d1vyhc1          76 SCSA-----DMTIKLWDFQGFECIRTMHGHD---------HNVSSVSIMPNGDH-IVSASR------DKTIKMWEVQTGY  134 (317)
T ss_dssp             EEET-----TSCCCEEETTSSCEEECCCCCS---------SCEEEEEECSSSSE-EEEEET------TSEEEEEETTTCC
T ss_pred             cccc-----cccccccccccccccccccccc---------ccceeeeccCCCce-EEeecc------CcceeEeecccce
Confidence             443     2345566666622211111100         01122334444444 455553      4479999999999


Q ss_pred             eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-------CCC--eEEeccCCccccccccccceeEEE
Q 012294          312 VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-------SSE--WICLGDGRKMVNGKRKEGFGCKIE  382 (466)
Q Consensus       312 ~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-------~~~--W~~~~~~~~~m~~~~~~~~~~~~~  382 (466)
                      .+.+...+.+....+...+++.. +..|+.+|.+.+.|+++...       .+.  -+.+.+...........+......
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  213 (317)
T d1vyhc1         135 CVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  213 (317)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             eeeEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence            99998888766677777777665 55788999999999887542       111  122222222111101111222333


Q ss_pred             EECCEEEE--EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEE
Q 012294          383 CHANQVFC--GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEV  458 (466)
Q Consensus       383 ~~~~~lf~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~v  458 (466)
                      ...+++++  +.++.|.+|.-.     .        .+..+ .+.+     ..+.|+.+.+  .| +++++=.+...|-|
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~-----~--------~~~~~-~~~~-----~~~~v~~~~~~~~~-~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVS-----T--------GMCLM-TLVG-----HDNWVRGVLFHSGG-KFILSCADDKTLRV  273 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETT-----T--------TEEEE-EEEC-----CSSCEEEEEECSSS-SCEEEEETTTEEEE
T ss_pred             ccCCceeEeccCCCEEEEEECC-----C--------CcEEE-EEeC-----CCCCEEEEEECCCC-CEEEEEECCCeEEE
Confidence            33344443  367789999642     1        11111 1222     3456877776  44 44455455567999


Q ss_pred             eccC
Q 012294          459 WQSS  462 (466)
Q Consensus       459 w~~~  462 (466)
                      |+..
T Consensus       274 wd~~  277 (317)
T d1vyhc1         274 WDYK  277 (317)
T ss_dssp             ECCT
T ss_pred             EECC
Confidence            9864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.026  Score=50.00  Aligned_cols=143  Identities=15%  Similarity=0.239  Sum_probs=87.0

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC  361 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~  361 (466)
                      ....+++.|+.      .+.|..||++..+.+.+..++.....  ....++.. +..|+.+|.+.+-|++....      
T Consensus       145 ~~~~~~~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~-l~s~~~dg~i~~~d~~~~~~------  209 (342)
T d2ovrb2         145 YDGRRVVSGAY------DFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIH-VVSGSLDTSIRVWDVETGNC------  209 (342)
T ss_dssp             ECSSCEEEEET------TSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSE-EEEEETTSCEEEEETTTCCE------
T ss_pred             cccceeeeecC------CCeEEEeecccceeeEEEcCcccccc--cccCCCCE-EEEEeCCCeEEEeeccccee------
Confidence            34445556653      34799999999999999887743222  33444444 55888999999999887441      


Q ss_pred             eccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEe
Q 012294          362 LGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLS  440 (466)
Q Consensus       362 ~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~  440 (466)
                      +..    ...  ....-..++..++.|++. .++.|.+|.-.    ..     . .    .+.+.+  .......+..++
T Consensus       210 ~~~----~~~--~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~----~~-----~-~----~~~~~~--~~~~~~~~~~~~  267 (342)
T d2ovrb2         210 IHT----LTG--HQSLTSGMELKDNILVSGNADSTVKIWDIK----TG-----Q-C----LQTLQG--PNKHQSAVTCLQ  267 (342)
T ss_dssp             EEE----ECC--CCSCEEEEEEETTEEEEEETTSCEEEEETT----TC-----C-E----EEEECS--TTSCSSCEEEEE
T ss_pred             eeE----ecc--cccceeEEecCCCEEEEEcCCCEEEEEecc----cc-----c-c----cccccc--cceeeeceeecc
Confidence            111    111  111334566667766665 66789999753    11     0 1    111111  112455788899


Q ss_pred             eecceeEEEeeccceEEEeccC
Q 012294          441 FGGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       441 ~gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      +-++.++.. .+...|-||+..
T Consensus       268 ~~~~~~~s~-s~Dg~i~iwd~~  288 (342)
T d2ovrb2         268 FNKNFVITS-SDDGTVKLWDLK  288 (342)
T ss_dssp             ECSSEEEEE-ETTSEEEEEETT
T ss_pred             cCCCeeEEE-cCCCEEEEEECC
Confidence            988765544 455789999854

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.025  Score=52.22  Aligned_cols=153  Identities=14%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             eeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC--eEEEEecCCCcCCCeeEEEe
Q 012294          173 VDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK--HLFVSFESGRRNSNSIMVYD  248 (466)
Q Consensus       173 v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~--~IYaGg~~g~~~l~sVE~YD  248 (466)
                      +.++++. ++++.+.|+  .+|.     +..+|..+.+......- ...+.+++...+  .+++|..     ...+..||
T Consensus       124 V~~l~~s~~~~~l~s~~--~dg~-----v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----~~~i~~~d  191 (388)
T d1erja_         124 IRSVCFSPDGKFLATGA--EDRL-----IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWD  191 (388)
T ss_dssp             EEEEEECTTSSEEEEEE--TTSC-----EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEE
T ss_pred             EEEEEECCCCCcceecc--cccc-----ccccccccccccccccccccccccccccccccccccccc-----ceeeeeee
Confidence            3344443 456778888  6653     45566665554332221 222332344433  2333544     45788999


Q ss_pred             cCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-------cc
Q 012294          249 INSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-------VD  321 (466)
Q Consensus       249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-------~d  321 (466)
                      ..+...........          ......+...++.++++|+.||      .|.+||.+++..++.....       .+
T Consensus       192 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         192 LRTGQCSLTLSIED----------GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             TTTTEEEEEEECSS----------CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSS
T ss_pred             cccccccccccccc----------ccccccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCC
Confidence            98833222222211          1122334456778888888554      6999999999988776533       34


Q ss_pred             cccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .+..+..++++..| .+|+.+|.+.+-|++...
T Consensus       256 ~v~~l~~s~~~~~l-~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         256 SVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSEEEEEEC----
T ss_pred             CEEEEEECCCCCEE-EEEECCCcEEEEeccCCc
Confidence            55667788887765 478899999999999865

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=0.018  Score=51.44  Aligned_cols=149  Identities=10%  Similarity=0.134  Sum_probs=85.6

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeee-EEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW-EVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI  360 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW-~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~  360 (466)
                      -++.++++|+.+      +.|.+||.+++++.. ....+.+....+..++++..|+ +|..+|.+.+-|++....     
T Consensus       146 ~~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~-----  213 (299)
T d1nr0a2         146 NDKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV-ATDQSRKVIPYSVANNFE-----  213 (299)
T ss_dssp             TTSCEEEEEETT------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSCEEEEEGGGTTE-----
T ss_pred             cccccccccccc------cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-----
Confidence            356677788744      479999999987542 3445566677788888887654 788999999999887431     


Q ss_pred             EeccCCccccccccccceeEEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceE
Q 012294          361 CLGDGRKMVNGKRKEGFGCKIEC-HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKIT  437 (466)
Q Consensus       361 ~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~  437 (466)
                       +..... +..  ....=..|+. .+++.+++  .++.|.||.--    ..     . ...+...    .  ......|.
T Consensus       214 -~~~~~~-~~~--h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~----~~-----~-~~~~~~~----~--~~~~~~v~  273 (299)
T d1nr0a2         214 -LAHTNS-WTF--HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN----KP-----S-DHPIIIK----G--AHAMSSVN  273 (299)
T ss_dssp             -ESCCCC-CCC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT----CT-----T-SCCEEET----T--SSTTSCEE
T ss_pred             -cccccc-ccc--cccccccccccccccceEEEcCCCEEEEEECC----CC-----C-cceEEEe----c--CCCCCcEE
Confidence             111000 110  0100111222 24555543  67899999732    11     0 1111111    0  01234566


Q ss_pred             EEeeecceeEEEeeccceEEEeccC
Q 012294          438 NLSFGGNKMFVTRKGQQTVEVWQSS  462 (466)
Q Consensus       438 ~~~~gg~r~f~~~~~~~~~~vw~~~  462 (466)
                      .+.+--++++++=.+...|-||+-|
T Consensus       274 ~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEEECCCCEEEEEeCCCEEEEEecc
Confidence            6665545566666666889999854

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.38  E-value=0.022  Score=53.43  Aligned_cols=192  Identities=13%  Similarity=0.061  Sum_probs=104.5

Q ss_pred             eeecCCcEEEEcC--CceeeEecCCCC---CCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCcee
Q 012294          138 ATTNYGTLHVSHG--SKITSFDWSMRK---KSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWE  211 (466)
Q Consensus       138 ~a~~~g~lyva~G--G~ve~YDW~~a~---m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~  211 (466)
                      +-.+++.+.++.+  |.+..||.....   ....+.+-+.+.++.+- +++..+.||  .++     ++..+|..+.+|.
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s--~D~-----~i~vWd~~~~~~~   86 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDR-----NAYVWTLKGRTWK   86 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTS-----CEEEEEEETTEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE--CCC-----eEEEEeecccccc
Confidence            3446776664433  345666643211   11222233456666664 567777777  554     4667788888887


Q ss_pred             ecCCC---CCceeEEEEE-CCe-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294          212 NVTRS---SSTVQAIGSS-DKH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL  286 (466)
Q Consensus       212 ~va~M---r~~~~Ava~l-~~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L  286 (466)
                      .....   ...+..++.. ++. +++|+.+     ..+..|+.++......+....  .+.   .-....+.|.+ ++.+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d-----~~i~i~~~~~~~~~~~~~~~~--~~~---~~~v~~v~~~p-~~~~  155 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIK--KPI---RSTVLSLDWHP-NSVL  155 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEEC--TTC---CSCEEEEEECT-TSSE
T ss_pred             cccccccccccccccccccccccceeeccc-----Ccceeeeeecccccccccccc--ccc---ccccccccccc-cccc
Confidence            55433   2333334443 344 4446543     346666665511110000000  000   00122345554 5667


Q ss_pred             EEEeecCCCCcccceEEEEeCCCCe------------------eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294          287 LASGSHSDISKVTGNIKFWDIRSGN------------------VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       287 yv~Gg~~g~~~~~~sVe~yDprt~~------------------~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~  348 (466)
                      +|+|+.||      +|.+||....+                  ..-+...+...+..+..++++..| ..|+.+|.+.+-
T Consensus       156 l~s~s~D~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~s~~~d~~i~iw  228 (371)
T d1k8kc_         156 LAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV-AWVSHDSTVCLA  228 (371)
T ss_dssp             EEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE-EEEETTTEEEEE
T ss_pred             eeccccCc------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc-cccccCCcceEE
Confidence            78888555      79999987654                  223333444445667778888765 467789999999


Q ss_pred             eccccC
Q 012294          349 DLRKLG  354 (466)
Q Consensus       349 dlr~~~  354 (466)
                      |+++-.
T Consensus       229 d~~~~~  234 (371)
T d1k8kc_         229 DADKKM  234 (371)
T ss_dssp             EGGGTT
T ss_pred             eeeccc
Confidence            998743

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.043  Score=47.79  Aligned_cols=172  Identities=15%  Similarity=0.254  Sum_probs=92.6

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      ...+..||..+.+.+..+....     .    ....+.+. -++.++++|+.||      .|..||.++++.+..+.++.
T Consensus       122 d~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~-~~~~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~  185 (317)
T d1vyhc1         122 DKTIKMWEVQTGYCVKTFTGHR-----E----WVRMVRPN-QDGTLIASCSNDQ------TVRVWVVATKECKAELREHR  185 (317)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-----S----CEEEEEEC-TTSSEEEEEETTS------CEEEEETTTCCEEEEECCCS
T ss_pred             CcceeEeecccceeeeEEccCC-----C----cceeeecc-cCCCEEEEEeCCC------eEEEEeeccceeeEEEecCC
Confidence            3567889998844333332111     0    11222333 3566777777444      79999999999888887664


Q ss_pred             ccccceeeecC-------------------CCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294          321 DCFSDVTVSDN-------------------LSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI  381 (466)
Q Consensus       321 d~~~~~~v~~~-------------------~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~  381 (466)
                      .....+...++                   ...++..+..+|.+.+-|+++..      ++..    +..  ....-..+
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~----~~~--~~~~v~~~  253 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM------CLMT----LVG--HDNWVRGV  253 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE------EEEE----EEC--CSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc------EEEE----EeC--CCCCEEEE
Confidence            44444433332                   23345677788888888877633      1211    111  01011112


Q ss_pred             EE-ECCE-EEE-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceE
Q 012294          382 EC-HANQ-VFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTV  456 (466)
Q Consensus       382 ~~-~~~~-lf~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~  456 (466)
                      +. .+++ |++ +.++.|.||.-.    ..    ..+  ..+.    +     ..+.|+.+++-  |..|+ +=.+...|
T Consensus       254 ~~~~~~~~l~s~~~dg~i~iwd~~----~~----~~~--~~~~----~-----h~~~V~~~~~s~~~~~l~-s~s~Dg~i  313 (317)
T d1vyhc1         254 LFHSGGKFILSCADDKTLRVWDYK----NK----RCM--KTLN----A-----HEHFVTSLDFHKTAPYVV-TGSVDQTV  313 (317)
T ss_dssp             EECSSSSCEEEEETTTEEEEECCT----TS----CCC--EEEE----C-----CSSCEEEEEECSSSSCEE-EEETTSEE
T ss_pred             EECCCCCEEEEEECCCeEEEEECC----CC----cEE--EEEc----C-----CCCCEEEEEEcCCCCEEE-EEeCCCeE
Confidence            22 2344 443 367889999642    11    111  1112    2     34679998884  44444 44445679


Q ss_pred             EEec
Q 012294          457 EVWQ  460 (466)
Q Consensus       457 ~vw~  460 (466)
                      -|||
T Consensus       314 ~iWd  317 (317)
T d1vyhc1         314 KVWE  317 (317)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.014  Score=54.04  Aligned_cols=171  Identities=12%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             eeeEecCC-CCCCCccccceeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCce-eecCCC---CCceeEEEE
Q 012294          153 ITSFDWSM-RKKSTILTHFTAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLNW-ENVTRS---SSTVQAIGS  225 (466)
Q Consensus       153 ve~YDW~~-a~m~~~R~~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~W-~~va~M---r~~~~Ava~  225 (466)
                      ...++|.. ....+...+-..+.++++..  +.+++.||  .++.     +-.||..+.+- ......   ...+.+++.
T Consensus       141 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~-----v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDGS-----VVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE--TTTE-----EEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             EEEEeecccccceeeeecccccccccccccccceEEEee--cccc-----cccccccccccceecccccCCCCccEEeee
Confidence            45677765 43333333333444444433  34566677  5553     33444433221 111112   223333555


Q ss_pred             E--CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEE--eeCCeEEEEeecCCCCcccc
Q 012294          226 S--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV--SSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       226 l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~--~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      .  .+.+++ |+.+     +.|-.||..+.+.+..+....     .    +.....+.  ..++.++++|+.|+      
T Consensus       214 ~pd~~~~l~s~~~d-----~~i~iwd~~~~~~~~~l~~~~-----~----~v~~~~~s~~~~dg~~l~s~s~D~------  273 (325)
T d1pgua1         214 SPDSGEFVITVGSD-----RKISCFDGKSGEFLKYIEDDQ-----E----PVQGGIFALSWLDSQKFATVGADA------  273 (325)
T ss_dssp             CSTTCCEEEEEETT-----CCEEEEETTTCCEEEECCBTT-----B----CCCSCEEEEEESSSSEEEEEETTS------
T ss_pred             ccccceeccccccc-----cceeeeeeccccccccccccc-----c----ccccceeeeeccCCCEEEEEeCCC------
Confidence            4  245666 6653     468899999966655554211     1    11111222  13666778888554      


Q ss_pred             eEEEEeCCCCeeeeEEcCCccccc--ceeeecCCCceEEEEEeeCceeEeec
Q 012294          301 NIKFWDIRSGNVAWEVKDEVDCFS--DVTVSDNLSAIYKVGINSGEVSYMDL  350 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~~d~~~--~~~v~~~~~~i~~v~~~~g~l~~~dl  350 (466)
                      +|.+||.++++++-++..+.....  .+++...+......|+.+|.|.+-||
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            799999999999877665532222  22344444444456788999988776

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.035  Score=51.07  Aligned_cols=188  Identities=15%  Similarity=0.238  Sum_probs=106.7

Q ss_pred             eeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcc--ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          220 VQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPV--NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       220 ~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~--~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      +.+++.. ++...+ |+.     ..+|..||....++.  .++..      ..   .....+.+. -++.++++++.   
T Consensus       100 I~~v~~s~dg~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~---~~v~~~~~~-~~~~~l~s~~~---  161 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAPTPRIKAELTS------SA---PACYALAIS-PDSKVCFSCCS---  161 (337)
T ss_dssp             EEEEEECTTSSEEEEEES-----SSEEEEEECCCC--EEEEEEEC------SS---SCEEEEEEC-TTSSEEEEEET---
T ss_pred             EEEEEEcCCCCEEEEeec-----cccccccccccccccccccccc------cc---ccccccccc-ccccccccccc---
Confidence            3345555 344444 665     357899998763221  11110      00   001122233 35666677763   


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                         .+.|..||.+++++......+.+....+.++.++..++ +|..+|.+.+-|+++...      +..    ...  ..
T Consensus       162 ---d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~-~~~~d~~v~i~d~~~~~~------~~~----~~~--~~  225 (337)
T d1gxra_         162 ---DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWDLREGRQ------LQQ----HDF--TS  225 (337)
T ss_dssp             ---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEE------EEE----EEC--SS
T ss_pred             ---cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccee------ecc----ccc--cc
Confidence               33799999999999998888877777888888877654 788999999999987441      111    010  11


Q ss_pred             cceeEEEE--ECCEEEE-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEe
Q 012294          376 GFGCKIEC--HANQVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTR  450 (466)
Q Consensus       376 ~~~~~~~~--~~~~lf~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~  450 (466)
                       .=..++.  .+..|++ +.++.+.+|.--     .       .+. +..  .     ...+.|+.+++-  |..|+.. 
T Consensus       226 -~i~~l~~~~~~~~l~~~~~d~~i~i~d~~-----~-------~~~-~~~--~-----~~~~~i~~v~~s~~g~~l~s~-  283 (337)
T d1gxra_         226 -QIFSLGYCPTGEWLAVGMESSNVEVLHVN-----K-------PDK-YQL--H-----LHESCVLSLKFAYCGKWFVST-  283 (337)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETT-----S-------SCE-EEE--C-----CCSSCEEEEEECTTSSEEEEE-
T ss_pred             -ceEEEEEcccccccceecccccccccccc-----c-------ccc-ccc--c-----ccccccceEEECCCCCEEEEE-
Confidence             1111222  2334443 367889999752     1       111 111  1     234578888874  4444444 


Q ss_pred             eccceEEEeccCC
Q 012294          451 KGQQTVEVWQSSS  463 (466)
Q Consensus       451 ~~~~~~~vw~~~~  463 (466)
                      .....|-||+...
T Consensus       284 s~Dg~i~iwd~~~  296 (337)
T d1gxra_         284 GKDNLLNAWRTPY  296 (337)
T ss_dssp             ETTSEEEEEETTT
T ss_pred             eCCCeEEEEECCC
Confidence            4447799998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.11  E-value=0.0038  Score=55.59  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI  307 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp  307 (466)
                      ++|| +..     .++|.+||++|.+.+.++....          .|..+.+.+-+..|||++..      .+.|.+||.
T Consensus         3 ~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~g~----------~p~~va~spdG~~l~v~~~~------~~~i~v~d~   61 (301)
T d1l0qa2           3 FAYIANSE-----SDNISVIDVTSNKVTATIPVGS----------NPMGAVISPDGTKVYVANAH------SNDVSIIDT   61 (301)
T ss_dssp             EEEEEETT-----TTEEEEEETTTTEEEEEEECSS----------SEEEEEECTTSSEEEEEEGG------GTEEEEEET
T ss_pred             EEEEEECC-----CCEEEEEECCCCeEEEEEECCC----------CceEEEEeCCCCEEEEEECC------CCEEEEEEC
Confidence            5787 433     4679999999966555554311          12334444455678888763      347999999


Q ss_pred             CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .+++.+.++..+.+. ..+.++.++..+|..+..++.+.+.|+...
T Consensus        62 ~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          62 ATNNVIATVPAGSSP-QGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             TTTEEEEEEECSSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceeeeeeccccc-cccccccccccccccccccceeeecccccc
Confidence            999999888665433 457788888888866666777777776653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.083  Score=46.31  Aligned_cols=281  Identities=11%  Similarity=0.071  Sum_probs=132.7

Q ss_pred             CCCCCCCceeeecCCcEEEEcC--CceeeEecCC-CCCCCcc---ccceeeeeecccC--CcEEEEecccCCCceeccce
Q 012294          129 NGRDSPSAIATTNYGTLHVSHG--SKITSFDWSM-RKKSTIL---THFTAVDSLLALS--PGVAAAGATDFSGLQVLDLE  200 (466)
Q Consensus       129 ~~R~~~~a~~a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R---~~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~sv  200 (466)
                      .++....++.-.+++.+.++.+  |.+..||+.. ......+   .+-+.|.++++..  +.+.+.|+  .+|.     +
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~--~d~~-----v   81 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT--VQGE-----I   81 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE--TTSC-----E
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc--cccc-----e
Confidence            4444455555566766553432  4566777544 2222222   1234566666653  45777777  6653     3


Q ss_pred             eeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce
Q 012294          201 NGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK  276 (466)
Q Consensus       201 E~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k  276 (466)
                      -.++............   ..........++...+ ++.     ..++..||..+.+.........    ..........
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~wd~~~~~~~~~~~~~~----~~~~~~~~~~  152 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNL----NSNNTKVKNK  152 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET-----TSEEEEECHHHHTTBCEEEEES----CSSSSSSCCC
T ss_pred             eeeeccccccccccccccccccccccccccccccccccc-----ccccceeeccccccceeeeccc----ccccccceee
Confidence            3444444333222221   2222213344444555 444     4578889987622111111100    1111001111


Q ss_pred             eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC--C-cccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD--E-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~--~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .......+..+++|..+      ++|..||.++.+.......  . ................+.++..+|.+.+.++...
T Consensus       153 ~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eeeeeccCCceeeecCC------CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            11223455556666643      4799999887764422211  1 1112222333455566778889999877776554


Q ss_pred             CC----CCCeEEeccCCccccccccccce--eEEEEE-CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccc
Q 012294          354 GD----SSEWICLGDGRKMVNGKRKEGFG--CKIECH-ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNL  424 (466)
Q Consensus       354 ~~----~~~W~~~~~~~~~m~~~~~~~~~--~~~~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~  424 (466)
                      ..    ...+.....+...-.   ....+  ..|+.+ ++.++++  .++.|-||.--     .       .+.+ +. +
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~-----~-------~~~l-~~-~  289 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKD---TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-----T-------RKKI-KN-F  289 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTC---CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT-----T-------TEEE-EE-C
T ss_pred             cceeeccccceeeeeeeccCC---CcccccceeEEecCCccEEEEECCCCEEEEEECC-----C-------CcEE-EE-e
Confidence            32    112222222111100   11011  123332 3455554  56789999642     1       1111 11 1


Q ss_pred             cCccccCCCCceEEEeeecceeEEEeec
Q 012294          425 MGRVTDMGGSKITNLSFGGNKMFVTRKG  452 (466)
Q Consensus       425 ~~~~~~~~~~~i~~~~~gg~r~f~~~~~  452 (466)
                          .......++.|+.=|+.|+++=.|
T Consensus       290 ----~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         290 ----AKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             ----CCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             ----cCCCCCEEEEEEeCCCEEEEEEcC
Confidence                112455789999999999886544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.11  Score=47.64  Aligned_cols=182  Identities=12%  Similarity=0.092  Sum_probs=102.3

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-  319 (466)
                      .+.+..++.++-+.+.++....     .    ....+.|.+.++.++++++.||      +|..||.++.+..-....+ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~-----~----~v~~~~~~~~~~~~~~~~~~d~------~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHS-----Q----RINACHLKQSRPMRSMTVGDDG------SVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCS-----S----CEEEEEECSSSSCEEEEEETTT------EEEEEETTTBEEEEEECSSS
T ss_pred             cceEEEEeecccccceeeeecc-----c----ccccccccccccceEEEeeccc------ccccccccccccceeccccc
Confidence            3467788888744444443211     1    1223456666677778888544      7999999888765544333 


Q ss_pred             --cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCe
Q 012294          320 --VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGE  395 (466)
Q Consensus       320 --~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~  395 (466)
                        .+....+..+++.+.++..|+.+|.|.+-|+++...   --.+...+...     ...-..++..+|+.+++  .++.
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~~~~~v-----~~~~~s~~~~dg~~l~s~s~D~~  274 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKYIEDDQEPV-----QGGIFALSWLDSQKFATVGADAT  274 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---EEECCBTTBCC-----CSCEEEEEESSSSEEEEEETTSE
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccc---ccccccccccc-----ccceeeeeccCCCEEEEEeCCCe
Confidence              444566778888888888899999999999886441   01111100000     11112233345655544  6788


Q ss_pred             EEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEec
Q 012294          396 IELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       396 ~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                      |.||.--     .        .++.+. +..+... .......+..-++..+++=.+-..|-||+
T Consensus       275 i~iwd~~-----~--------~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         275 IRVWDVT-----T--------SKCVQK-WTLDKQQ-LGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEEEETT-----T--------TEEEEE-EECCTTC-GGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEEECC-----C--------CCEEEE-EEecCCc-ccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            9999531     1        111121 2222111 11233445555555556666668899997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.066  Score=46.06  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=66.8

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI  302 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV  302 (466)
                      .......++.++.     ...|..||..+.+++..+...            ......+...+..+++|+.||      +|
T Consensus       144 ~~~~~~~~~~~s~-----d~~i~~~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~l~~~~~dg------~i  200 (293)
T d1p22a2         144 VDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGH------------KRGIACLQYRDRLVVSGSSDN------TI  200 (293)
T ss_dssp             EEEETTEEEEEET-----TSEEEEEETTTCCEEEEEECC------------SSCEEEEEEETTEEEEEETTS------CE
T ss_pred             ceecccccccccC-----CCceeeecCCCCcEEEEEccc------------ccccccccCCCCeEEEecCCC------EE
Confidence            3444555555433     357899999985444333221            112223334455667777444      79


Q ss_pred             EEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          303 KFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       303 e~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .+||.++.+.+.....+.+....  ...++ ..+..|+.+|.+.+-|+++..
T Consensus       201 ~i~d~~~~~~~~~~~~~~~~v~~--~~~~~-~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         201 RLWDIECGACLRVLEGHEELVRC--IRFDN-KRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEE--EECCS-SEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEecccceeeeeecccceeeee--ccccc-eEEEEEcCCCEEEEEECCCCc
Confidence            99999999999888777543332  33344 445578899999999998865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0078  Score=54.00  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNE  257 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~  257 (466)
                      -++...+.|+  .++.     +..||..+..-...-.- ...+.+++..++.|++|+.     ..+|-.||..+.+..-.
T Consensus       211 ~~~~~~~~~~--~d~~-----i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         211 HERKRCISAS--MDTT-----IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA-----DGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             TTTTEEEEEE--TTSC-----EEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECT-----TSEEEEEETTTCCEEEE
T ss_pred             ccceeeeccc--ccce-----EEeeeccccccccccccccccccccccccceeeeeec-----ccccccccccccceecc
Confidence            3566777777  5543     44566555442221111 2333435554555555655     35789999988321111


Q ss_pred             ccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeee-EEcCCcccccceeeecCCCceE
Q 012294          258 IGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW-EVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       258 ~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW-~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      ..+           .....+.+...++.++++|. |      ++|.+||.++++++. ...+|.+....++.+++  .+.
T Consensus       279 ~~~-----------~~~~~~~~~~~~~~~l~~g~-d------~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~  338 (355)
T d1nexb2         279 YHH-----------TNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLV  338 (355)
T ss_dssp             EEC-----------TTCCCCCEEEECSSEEEEEE-T------TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEE
T ss_pred             ccc-----------CCceEEEEEcCCCCEEEEEe-C------CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEE
Confidence            111           11223345556777777664 3      479999999999885 45566777777777654  566


Q ss_pred             EEEEeeCceeE
Q 012294          337 KVGINSGEVSY  347 (466)
Q Consensus       337 ~v~~~~g~l~~  347 (466)
                      ..|+.+|.+++
T Consensus       339 ~~~s~dg~~~l  349 (355)
T d1nexb2         339 AAVEKDGQSFL  349 (355)
T ss_dssp             EEEESSSCEEE
T ss_pred             EEEECCCcEEE
Confidence            67888998654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.96  E-value=0.025  Score=53.05  Aligned_cols=205  Identities=12%  Similarity=0.158  Sum_probs=107.1

Q ss_pred             CCeEEE-EecCCCcCCCeeEEEecCCC--CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEE
Q 012294          227 DKHLFV-SFESGRRNSNSIMVYDINSL--KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIK  303 (466)
Q Consensus       227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~--~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe  303 (466)
                      ++.+.| |+.     ...|..||.++.  ..+..+.     ++.    .+...+.|.+- +.++++|+.|+      +|.
T Consensus        18 dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~-----gH~----~~V~~l~fsp~-~~~l~s~s~D~------~i~   76 (371)
T d1k8kc_          18 DRTQIAICPN-----NHEVHIYEKSGNKWVQVHELK-----EHN----GQVTGVDWAPD-SNRIVTCGTDR------NAY   76 (371)
T ss_dssp             TSSEEEEECS-----SSEEEEEEEETTEEEEEEEEE-----CCS----SCEEEEEEETT-TTEEEEEETTS------CEE
T ss_pred             CCCEEEEEeC-----CCEEEEEECCCCCEEEEEEec-----CCC----CCEEEEEECCC-CCEEEEEECCC------eEE
Confidence            444555 544     346889998762  1222221     011    12345667664 44556677444      799


Q ss_pred             EEeCCCCee--eeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294          304 FWDIRSGNV--AWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI  381 (466)
Q Consensus       304 ~yDprt~~~--vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~  381 (466)
                      +||.++++.  +.....+...+..+..++++..|+ +|..++.+.+-++....  +.|.....    ...  -+..=..+
T Consensus        77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~-~~s~d~~i~i~~~~~~~--~~~~~~~~----~~~--~~~~v~~v  147 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-VGSGSRVISICYFEQEN--DWWVCKHI----KKP--IRSTVLSL  147 (371)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE-EEETTSSEEEEEEETTT--TEEEEEEE----CTT--CCSCEEEE
T ss_pred             EEeecccccccccccccccccccccccccccccce-eecccCcceeeeeeccc--cccccccc----ccc--cccccccc
Confidence            999998872  233344556677788888887654 78889998877776533  33443332    110  11111223


Q ss_pred             EEE-CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceE
Q 012294          382 ECH-ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTV  456 (466)
Q Consensus       382 ~~~-~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~  456 (466)
                      +.+ +++.+++  .++.|.||+.-.................-....+- ......+.|..++|-  |++|+ +-.+...|
T Consensus       148 ~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~-s~~~d~~i  225 (371)
T d1k8kc_         148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSCGWVHGVCFSANGSRVA-WVSHDSTV  225 (371)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCSSCEEEEEECSSSSEEE-EEETTTEE
T ss_pred             cccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee-eccCccCcEEEEEeeccccccc-ccccCCcc
Confidence            333 4666654  78899999864211100000000000000000000 011355678888874  55654 44556779


Q ss_pred             EEeccCC
Q 012294          457 EVWQSSS  463 (466)
Q Consensus       457 ~vw~~~~  463 (466)
                      .||+...
T Consensus       226 ~iwd~~~  232 (371)
T d1k8kc_         226 CLADADK  232 (371)
T ss_dssp             EEEEGGG
T ss_pred             eEEeeec
Confidence            9998643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.83  E-value=0.018  Score=51.57  Aligned_cols=142  Identities=14%  Similarity=0.119  Sum_probs=84.7

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPV  255 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~  255 (466)
                      -.+.+++.|+  .++     .+..||..+.+=...-.. ...+-+++.. ++.+++ |+.+     ..|-.||..+.+.+
T Consensus       194 ~~~~~~~~~~--~d~-----~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~  261 (340)
T d1tbga_         194 PDTRLFVSGA--CDA-----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQEL  261 (340)
T ss_dssp             TTSSEEEEEE--TTT-----EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEE
T ss_pred             cccceeEEee--cCc-----eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeecccccc
Confidence            3556777777  544     244556554431111011 2333335554 344555 6653     46788998884443


Q ss_pred             ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCce
Q 012294          256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAI  335 (466)
Q Consensus       256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i  335 (466)
                      .......    .   ..+...+.+.+ ++.++++|+.||      +|.+||.++++++-++.+|...+..+++++++..|
T Consensus       262 ~~~~~~~----~---~~~i~~~~~s~-~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l  327 (340)
T d1tbga_         262 MTYSHDN----I---ICGITSVSFSK-SGRLLLAGYDDF------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             EEECCTT----C---CSCEEEEEECS-SSCEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             ccccccc----c---cCceEEEEECC-CCCEEEEEECCC------EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence            3332211    0   01122334443 556667777444      79999999999999999998788888999988876


Q ss_pred             EEEEEeeCceeE
Q 012294          336 YKVGINSGEVSY  347 (466)
Q Consensus       336 ~~v~~~~g~l~~  347 (466)
                      + .|+.||.|.+
T Consensus       328 ~-s~s~Dg~v~i  338 (340)
T d1tbga_         328 A-TGSWDSFLKI  338 (340)
T ss_dssp             E-EEETTSCEEE
T ss_pred             E-EEccCCEEEE
Confidence            5 6788888754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0077  Score=57.30  Aligned_cols=138  Identities=14%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             cccCCcEEEEecccCCCceeccceeeeeCCCCcee----ecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEE
Q 012294          177 LALSPGVAAAGATDFSGLQVLDLENGYVKETLNWE----NVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVY  247 (466)
Q Consensus       177 ~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~----~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~Y  247 (466)
                      .+-.+.++|.|+  .+|     ++..||..+.+-.    ....+   ...+-+++.. ++.+.+ |+++..  ...|-.|
T Consensus       191 ~~s~dg~lasgs--~Dg-----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--~~~i~lw  261 (393)
T d1sq9a_         191 DISERGLIATGF--NNG-----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCITLY  261 (393)
T ss_dssp             EECTTSEEEEEC--TTS-----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEEEEE
T ss_pred             EECCCCEEEEEe--CCC-----cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC--cceeeec
Confidence            344555777777  555     3556777665432    12222   2334445554 445445 666433  3568899


Q ss_pred             ecCCCCccccccccccc--------cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294          248 DINSLKPVNEIGQNEIY--------GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       248 Dp~t~~~~~~~~~~~~~--------~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      |.++.+.+..+......        ++..    ..+.+.|.+ ++.++++|+.|+      +|.+||.++++++.++.+|
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~----~V~~l~fsp-d~~~l~S~s~D~------~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFND-SGETLCSAGWDG------KLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSS----CEEEEEECS-SSSEEEEEETTS------EEEEEETTTTEEEEEEECC
T ss_pred             ccccceeeeeeccccccccceeeeecccC----ceeeeccCC-CCCeeEEECCCC------EEEEEECCCCCEEEEECCc
Confidence            99986655554322200        1111    122344544 667778888554      8999999999999999999


Q ss_pred             ccccc----ceeeecCCCc
Q 012294          320 VDCFS----DVTVSDNLSA  334 (466)
Q Consensus       320 ~d~~~----~~~v~~~~~~  334 (466)
                      .+.+.    .++.++++..
T Consensus       331 ~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         331 CDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             GGGCSSGGGCCCBCTTSCB
T ss_pred             CCcccCCccEEEECCCCCE
Confidence            65443    3555666655

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.022  Score=52.55  Aligned_cols=193  Identities=15%  Similarity=0.112  Sum_probs=91.3

Q ss_pred             ecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCC
Q 012294          140 TNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTR  215 (466)
Q Consensus       140 ~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~  215 (466)
                      .+++.+.++.+  |.+..||+.. ......+.+...+.++.+. ++...+.|+  .++     .+..+|..+..-.....
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--~~~-----~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDR-----TVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-----EEEEEETTTTEEEEEEE
T ss_pred             CCCCCcceecccccccccccccccccccccccccccccccccccccccccccc--cce-----eeeeeeccccccccccc
Confidence            34555553332  3455666333 2222222222233333333 345566665  443     24455555543322222


Q ss_pred             CCCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeec
Q 012294          216 SSSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSH  292 (466)
Q Consensus       216 Mr~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~  292 (466)
                      .......++..  ++.+++ |+.+     +.|-.||..+.+.+..+......  .....-+...+.|.+ ++.++++|+.
T Consensus       203 ~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~-~~~~l~s~~~  274 (388)
T d1erja_         203 IEDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTR-DGQSVVSGSL  274 (388)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             cccccccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeecccccc--ccCCCCCEEEEEECC-CCCEEEEEEC
Confidence            21111112332  344555 6653     46788999885444433321100  000001122344544 5556677774


Q ss_pred             CCCCcccceEEEEeCCCCeeeeE------------EcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          293 SDISKVTGNIKFWDIRSGNVAWE------------VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       293 ~g~~~~~~sVe~yDprt~~~vW~------------~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      |      ++|.+||.++.+....            ...+.+....++.++++..|+ .|+.+|.|.+-|+++.+
T Consensus       275 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         275 D------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             T------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCC
T ss_pred             C------CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEE-EEeCCCEEEEEECCCCc
Confidence            4      4799999887654322            223344556777888877654 67789999999998744

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.47  E-value=0.3  Score=45.29  Aligned_cols=202  Identities=10%  Similarity=0.049  Sum_probs=108.0

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeec-CCCCCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENV-TRSSSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPVN  256 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~v-a~Mr~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~  256 (466)
                      -++.||++--  ..+     .+-++||.+.+.... ++......++++. +|.||+....+......+..+|+.+-....
T Consensus        49 ~~G~Ly~~D~--~~g-----~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          49 RQGQLFLLDV--FEG-----NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             TTSCEEEEET--TTC-----EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             CCCCEEEEEC--CCC-----EEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            3577888854  332     355788988754432 3332233346654 678998222223336678888888722111


Q ss_pred             cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceE
Q 012294          257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIY  336 (466)
Q Consensus       257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~  336 (466)
                      ....       .... ....-..+..+|.||+...........+.+.++||..+.+. ...+....=-.+++++++..||
T Consensus       122 ~~~~-------~~~~-~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         122 IIED-------LSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             EECS-------SSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEE
T ss_pred             eccC-------CCcc-cCCcceeEEeccceeecccccccccCcceeEEEecccceeE-EEeeccceeeeeeeccccceEE
Confidence            1110       0000 00111223467889987653333334567999999876521 1111111113478899999999


Q ss_pred             EEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEE-ECCEEEEE--eCCeEEEeEe
Q 012294          337 KVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIEC-HANQVFCG--KGGEIELWSE  401 (466)
Q Consensus       337 ~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~-~~~~lf~~--~~~~~~v~~~  401 (466)
                      ..-...+.|+..|+..-+. -.+.....  ....  ..+. .=-.+++ -+|.||++  .++.|.+|+.
T Consensus       193 vad~~~~~I~~~d~~~~g~-~~~~~~~~--~~~~--~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGV-TIQPFGAT--IPYY--FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSS-SEEEEEEE--EEEE--CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EecccCCceEEEEEcCCCc-eeccccce--eeec--cCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            8888999999999876542 11111110  0011  0111 1123444 35779998  4678888873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.22  Score=43.78  Aligned_cols=231  Identities=14%  Similarity=0.158  Sum_probs=121.8

Q ss_pred             eeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECC-eEEEEecCCCcCCCeeEEEecC
Q 012294          172 AVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDK-HLFVSFESGRRNSNSIMVYDIN  250 (466)
Q Consensus       172 ~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~-~IYaGg~~g~~~l~sVE~YDp~  250 (466)
                      .+.++.+.++..++.+|  .++.-.+-.++.....           .....++..++ .+++.+.     .+.+..|+..
T Consensus        48 ~V~~~~~~~~~~~~s~s--~D~~v~~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  109 (287)
T d1pgua2          48 LIVSLDNSKAQEYSSIS--WDDTLKVNGITKHEFG-----------SQPKVASANNDGFTAVLTN-----DDDLLILQSF  109 (287)
T ss_dssp             CEEEEECCSTTCCEEEE--TTTEEEETTEEEEECS-----------SCEEEEEECSSSEEEEEET-----TSEEEEEETT
T ss_pred             CEEEEEecCCCeEEEEe--eccccccccccccccc-----------cceeeeeeccCCceEEEee-----cccceeeecc
Confidence            45566667777778888  6654322222211110           11111233333 4444322     3456778877


Q ss_pred             CCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeee
Q 012294          251 SLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVS  329 (466)
Q Consensus       251 t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~  329 (466)
                      +.+.+..+....            . ...+..++..+++|+.++     +.|+.||....+...+...+ ......++.+
T Consensus       110 ~~~~~~~~~~~~------------~-~~~~~~~~~~~~v~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s  171 (287)
T d1pgua2         110 TGDIIKSVRLNS------------P-GSAVSLSQNYVAVGLEEG-----NTIQVFKLSDLEVSFDLKTPLRAKPSYISIS  171 (287)
T ss_dssp             TCCEEEEEECSS------------C-EEEEEECSSEEEEEETTT-----SCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred             ceeeeeeccccc------------e-eeeeeccCcceeeecccc-----ceeeeeeccccceeeeeeeccCCceeEEEec
Confidence            744333332211            0 112234555667777554     26999998877766665544 4455677888


Q ss_pred             cCCCceEEEEEeeCceeEeeccccCC-CCCeEEeccCCcc--ccccccccceeEEEEECCEEEEE--eCCeEEEeEeeee
Q 012294          330 DNLSAIYKVGINSGEVSYMDLRKLGD-SSEWICLGDGRKM--VNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVM  404 (466)
Q Consensus       330 ~~~~~i~~v~~~~g~l~~~dlr~~~~-~~~W~~~~~~~~~--m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~  404 (466)
                      +++..| .+|..+|.+.+-|++.... ...|..  ...+.  +.- .+.+........+++++++  .++.|.||+--  
T Consensus       172 ~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~~~~-~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~--  245 (287)
T d1pgua2         172 PSETYI-AAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYSVK--  245 (287)
T ss_dssp             TTSSEE-EEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEE-CCCC------CCSCCEEEEEETTSCEEEEESS--
T ss_pred             cCcccc-ccccccccccceeecccccccccccc--cccccceeee-cccccccccccCCCCeeEeecCCCeEEEEECC--
Confidence            887764 4788999999999876431 111110  00000  100 0111222222345666665  67889999731  


Q ss_pred             cCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEec
Q 012294          405 GSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQ  460 (466)
Q Consensus       405 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~  460 (466)
                        ..        ...++. +     ....+.|+.+++-.|..++|=.....|-+|.
T Consensus       246 --~~--------~~~~~~-~-----~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         246 --RP--------MKIIKA-L-----NAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             --CT--------TCCEEE-T-----TSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             --CC--------CeEEEE-e-----CCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence              11        111221 1     1235679999987776677777778999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.20  E-value=0.059  Score=48.18  Aligned_cols=86  Identities=12%  Similarity=0.080  Sum_probs=58.6

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV  320 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~  320 (466)
                      .++|-+||..|.+++.++.-..     +   ..+..+.+.+-+..|||++..      .+.|..||..+++.+++..-..
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~~-----~---~~p~~l~~spDG~~l~v~~~~------~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMPD-----K---FGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECSS-----C---CSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEEEECCCCCEEEEEEcCC-----C---CCcceEEECCCCCEEEEEECC------CCcEEEEeCccCeeeeeecccc
Confidence            4689999999977666543211     0   013344555545678888763      3479999999999998775431


Q ss_pred             ------ccccceeeecCCCceEEEEE
Q 012294          321 ------DCFSDVTVSDNLSAIYKVGI  340 (466)
Q Consensus       321 ------d~~~~~~v~~~~~~i~~v~~  340 (466)
                            ..-..+++++|+..+|....
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cccccCCceEEEEEecCCCEEEEEec
Confidence                  23356788999999986654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.38  Score=41.74  Aligned_cols=164  Identities=11%  Similarity=0.091  Sum_probs=92.6

Q ss_pred             CceeEEEEEC-Ce-EEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294          218 STVQAIGSSD-KH-LFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       218 ~~~~Ava~l~-~~-IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      ..+-+++... +. |.+|+.     ..+|-+||..+.+...++-...  +..    -+.+.+.|.+-++.++++|+.|| 
T Consensus        12 d~I~~l~fsp~~~~L~s~s~-----Dg~v~iwd~~~~~~~~~~~~~~--~h~----~~V~~v~f~~~~~~~l~sg~~d~-   79 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSW-----DGSLTVYKFDIQAKNVDLLQSL--RYK----HPLLCCNFIDNTDLQIYVGTVQG-   79 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEET-----TSEEEEEEEETTTTEEEEEEEE--ECS----SCEEEEEEEESSSEEEEEEETTS-
T ss_pred             CCEEEEEEeCCCCEEEEEEC-----CCeEEEEEccCCCcceEEEEec--CCC----CCEEEEEEeCCCCCEEEEccccc-
Confidence            3444466653 33 444654     3578899987632222211100  001    13455678777788888888544 


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                           +|.+||..++........+............+...+..++.++.+.+-|+|....  ..............  ..
T Consensus        80 -----~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~--~~~~~~~~~~~~~~--~~  150 (342)
T d1yfqa_          80 -----EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--GVIAVKNLNSNNTK--VK  150 (342)
T ss_dssp             -----CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT--BCEEEEESCSSSSS--SC
T ss_pred             -----ceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc--ceeeeccccccccc--ce
Confidence                 7999999999877666555333333444455666677888999999999998652  22333321111110  11


Q ss_pred             cceeEEEEECCEE-EEEeCCeEEEeEee
Q 012294          376 GFGCKIECHANQV-FCGKGGEIELWSEI  402 (466)
Q Consensus       376 ~~~~~~~~~~~~l-f~~~~~~~~v~~~~  402 (466)
                      .....+...++.+ ..+.++.|.+|.-.
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESS
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEecc
Confidence            1222333344433 44578889999753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.84  E-value=0.013  Score=52.53  Aligned_cols=56  Identities=13%  Similarity=-0.070  Sum_probs=47.6

Q ss_pred             cceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          299 TGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .+.|.+||..+++++++..-+  +....++++++|+..||+++..+|.|.+.|+.+.+
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            458999999999999998654  33446889999999999888899999999998855

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.025  Score=53.54  Aligned_cols=119  Identities=13%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             EEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc
Q 012294          222 AIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       222 Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      +++...+.+.| |+.     ..+|-.||..+.+++..+.......+..   -+...+.|.+ ++.++++|+.|+.   ..
T Consensus       189 ~v~~s~dg~lasgs~-----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~---~~V~~l~~sp-dg~~l~sgs~D~t---~~  256 (393)
T d1sq9a_         189 SVDISERGLIATGFN-----NGTVQISELSTLRPLYNFESQHSMINNS---NSIRSVKFSP-QGSLLAIAHDSNS---FG  256 (393)
T ss_dssp             EEEECTTSEEEEECT-----TSEEEEEETTTTEEEEEEECCC---CCC---CCEEEEEECS-STTEEEEEEEETT---EE
T ss_pred             EEEECCCCEEEEEeC-----CCcEEEEeeccccccccccccccccccc---ceEEEccccc-ccceeeeecCCCC---cc
Confidence            35666555555 654     4578999999855544333222110000   0122344544 6677788887663   34


Q ss_pred             eEEEEeCCCCeeeeEEc-------------CCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          301 NIKFWDIRSGNVAWEVK-------------DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~-------------~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .|.+||.+++++++++.             +|.+.+..++.++++..| .-|+.||.|.+=|+++.
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTT
T ss_pred             eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCCC
Confidence            69999999999988875             455667778888888764 47789999998888773

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.67  E-value=0.77  Score=41.97  Aligned_cols=206  Identities=14%  Similarity=0.171  Sum_probs=105.9

Q ss_pred             ceeeeeCCCCceeecCCCCCceeEEE-EECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee
Q 012294          199 LENGYVKETLNWENVTRSSSTVQAIG-SSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL  277 (466)
Q Consensus       199 svE~ydp~t~~W~~va~Mr~~~~Ava-~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~  277 (466)
                      .+-++||.+.+-+.. ++....++++ .-++.|+++..      +.+..||+.+       ++.+.+. +.....+.+..
T Consensus        41 ~I~r~d~~~g~~~~~-~~~~~~~~i~~~~dg~l~va~~------~gl~~~d~~t-------g~~~~l~-~~~~~~~~~~~  105 (295)
T d2ghsa1          41 ELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIASD------DGLFLRDTAT-------GVLTLHA-ELESDLPGNRS  105 (295)
T ss_dssp             EEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEET------TEEEEEETTT-------CCEEEEE-CSSTTCTTEEE
T ss_pred             EEEEEECCCCeEEEE-ECCCCcEEEEEecCCCEEEEEe------CccEEeeccc-------ceeeEEe-eeecCCCcccc
Confidence            355678877654322 2211222233 35667777432      4688999998       3322110 00000000111


Q ss_pred             --eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294          278 --RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD  355 (466)
Q Consensus       278 --~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~  355 (466)
                        ..+.-+|.||+...+....  .+.-.+|....+++.-... ....--.++.++++..+|.+-...+.|+..|+-.-..
T Consensus       106 nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         106 NDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             eeeEECCCCCEEEEecccccc--ccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence              1233578888877655433  2223344445565322221 1112245677889999998888889999888743221


Q ss_pred             ---CCCeEEeccCCccccccccccceeEEEE-ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc
Q 012294          356 ---SSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT  429 (466)
Q Consensus       356 ---~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  429 (466)
                         ..+.+.+..     ..  ..+.--.+++ -.|.||++  .++.|.+|+.     +.     .+-..+ +        
T Consensus       183 ~~~~~~~~~~~~-----~~--~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-----~G-----~~~~~i-~--------  236 (295)
T d2ghsa1         183 LPTGKAEVFIDS-----TG--IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DG-----NHIARY-E--------  236 (295)
T ss_dssp             CBSSCCEEEEEC-----TT--SSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TC-----CEEEEE-E--------
T ss_pred             ccccceEEEecc-----Cc--ccccccceEEcCCCCEEeeeeCCCceEEecC-----CC-----cEeeEe-c--------
Confidence               122222221     11  1111122333 35689998  4777888873     11     111111 1        


Q ss_pred             cCCCCceEEEeeec---ceeEEE
Q 012294          430 DMGGSKITNLSFGG---NKMFVT  449 (466)
Q Consensus       430 ~~~~~~i~~~~~gg---~r~f~~  449 (466)
                       .-.-.+|+.+|||   ++||||
T Consensus       237 -lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         237 -VPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             -CSCSBEEEEEEESTTSCEEEEE
T ss_pred             -CCCCceEEEEEeCCCCCEEEEE
Confidence             1123699999999   679998

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.63  E-value=0.058  Score=47.92  Aligned_cols=146  Identities=13%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             EEEEC-CeEEE-EecCCCcCCCeeEEEecCCCCc--cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcc
Q 012294          223 IGSSD-KHLFV-SFESGRRNSNSIMVYDINSLKP--VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKV  298 (466)
Q Consensus       223 va~l~-~~IYa-Gg~~g~~~l~sVE~YDp~t~~~--~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~  298 (466)
                      ++... +.+++ |+.     ...+..||.++.+.  +..+.+      ..    ....+.+.+ ++..+++|+.+     
T Consensus       142 ~~~s~~~~~l~~g~~-----dg~i~~~d~~~~~~~~~~~~~~------~~----~i~~~~~~~-~~~~l~~~~~d-----  200 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQ-----DSKVHVYKLSGASVSEVKTIVH------PA----EITSVAFSN-NGAFLVATDQS-----  200 (299)
T ss_dssp             EEECTTSCEEEEEET-----TSEEEEEEEETTEEEEEEEEEC------SS----CEEEEEECT-TSSEEEEEETT-----
T ss_pred             ccccccccccccccc-----cccccccccccccccccccccc------cc----ccccccccc-ccccccccccc-----
Confidence            44433 34444 665     35788999877221  111111      11    122334444 45556667644     


Q ss_pred             cceEEEEeCCCCeeee---EEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294          299 TGNIKFWDIRSGNVAW---EVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE  375 (466)
Q Consensus       299 ~~sVe~yDprt~~~vW---~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~  375 (466)
                       +.|.+||.+++...-   .+..|.+.+..++.++++..| ..|+.+|.+.+-|+++...  .-+....    ..   ..
T Consensus       201 -~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~sgs~dg~i~iwd~~~~~~--~~~~~~~----~~---~~  269 (299)
T d1nr0a2         201 -RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNKPSD--HPIIIKG----AH---AM  269 (299)
T ss_dssp             -SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTCTTS--CCEEETT----SS---TT
T ss_pred             -cccccccccccccccccccccccccccccccccccccce-EEEcCCCEEEEEECCCCCc--ceEEEec----CC---CC
Confidence             479999999886442   233345566777888887654 4788999999999987542  1121111    11   11


Q ss_pred             c-ceeEEEEECCEEEEE-eCCeEEEeE
Q 012294          376 G-FGCKIECHANQVFCG-KGGEIELWS  400 (466)
Q Consensus       376 ~-~~~~~~~~~~~lf~~-~~~~~~v~~  400 (466)
                      . ..+....-+++|.++ .++.|.+|.
T Consensus       270 ~~v~~~~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         270 SSVNSVIWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             SCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CcEEEEEECCCCEEEEEeCCCEEEEEe
Confidence            1 222222234555544 567899996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.57  E-value=0.16  Score=49.30  Aligned_cols=156  Identities=11%  Similarity=0.015  Sum_probs=92.0

Q ss_pred             CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEe
Q 012294          283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICL  362 (466)
Q Consensus       283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~  362 (466)
                      .++++|+-.      ..++|.+||++|++++-++..+ .....+.+++||..|| +++.+|.+.+.|+...+. ..--.+
T Consensus        31 ~~~~~v~~~------d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~-~~s~dg~v~~~d~~t~~~-~~~~~i  101 (432)
T d1qksa2          31 ENLFSVTLR------DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLF-VIGRDGKVNMIDLWMKEP-TTVAEI  101 (432)
T ss_dssp             GGEEEEEET------TTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEE-EEETTSEEEEEETTSSSC-CEEEEE
T ss_pred             CcEEEEEEc------CCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEE-EEcCCCCEEEEEeeCCCc-eEEEEE
Confidence            445555554      3558999999999999888644 4457889999999998 567899999999987653 111112


Q ss_pred             ccCCccccccccccceeEEEE----ECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCce
Q 012294          363 GDGRKMVNGKRKEGFGCKIEC----HANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKI  436 (466)
Q Consensus       363 ~~~~~~m~~~~~~~~~~~~~~----~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i  436 (466)
                      .-    ..  .+  .+.....    -+.+||++  .++.|.||..-    ..    ..+..-...++.++..+-...+..
T Consensus       102 ~~----~~--~~--~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~----t~----~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         102 KI----GS--EA--RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE----TL----EPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             EC----CS--EE--EEEEECCSTTCTTTEEEEEEEETTEEEEEETT----TC----CEEEEEECCEECTTTCCEESCCCE
T ss_pred             ec----CC--CC--CCeEEecccCCCCCEEEEEcCCCCeEEEEeCc----cc----cceeeeccCCccccceeccCCCce
Confidence            21    00  01  1111111    14567775  57889999752    00    011110112223332222233344


Q ss_pred             EEE--eeecceeEEEeeccceEEEeccCC
Q 012294          437 TNL--SFGGNKMFVTRKGQQTVEVWQSSS  463 (466)
Q Consensus       437 ~~~--~~gg~r~f~~~~~~~~~~vw~~~~  463 (466)
                      ..+  +-.|.+++++=.+...|-+|+...
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~  194 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTD  194 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence            333  335788999988888888887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.55  E-value=0.035  Score=49.56  Aligned_cols=87  Identities=9%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-  319 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-  319 (466)
                      .+.|.+||..+.+.+.++....    .+   ..+..+.+.+-+..|||+|..      .+.|.+||..+++++++...+ 
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~----~~---~~~~~i~~spDg~~l~v~~~~------~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIAD----AG---PTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTT----CT---TCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCB
T ss_pred             CCEEEEEECCCCeEEEEEECCC----CC---CCccEEEECCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecCC
Confidence            4789999999977776664322    11   113344444445678888763      348999999999999887654 


Q ss_pred             ----cccccceeeecCCCceEEEEE
Q 012294          320 ----VDCFSDVTVSDNLSAIYKVGI  340 (466)
Q Consensus       320 ----~d~~~~~~v~~~~~~i~~v~~  340 (466)
                          +.....+.+++++..+|..+.
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CcccccceeeEEEcCCCcEEEEeec
Confidence                334567889999999886654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.53  Score=41.06  Aligned_cols=169  Identities=15%  Similarity=0.162  Sum_probs=88.3

Q ss_pred             eeeCCCCceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEe
Q 012294          202 GYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS  281 (466)
Q Consensus       202 ~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~  281 (466)
                      .++..+.++....+....+.+++..++.+.+|+.++    +.+..||....+....+....    .    .+...+.|.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~~~~~~~~~~~----~----~~v~~~~~s~  172 (287)
T d1pgua2         105 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG----NTIQVFKLSDLEVSFDLKTPL----R----AKPSYISISP  172 (287)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT----SCEEEEETTEEEEEEECSSCC----S----SCEEEEEECT
T ss_pred             eeeccceeeeeeccccceeeeeeccCcceeeecccc----ceeeeeeccccceeeeeeecc----C----CceeEEEecc
Confidence            455555554433222233333333344555576643    468889876633222222110    0    1123344443


Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeee-EEcCCcccccceeeec---------CCCceEEEEEeeCceeEeecc
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW-EVKDEVDCFSDVTVSD---------NLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW-~~~~~~d~~~~~~v~~---------~~~~i~~v~~~~g~l~~~dlr  351 (466)
                       ++.++++|..+|      .|.+||.++++..- .+..|..+...++..+         ....++.-|+.+|.+++-|++
T Consensus       173 -~~~~l~~g~~dg------~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         173 -SETYIAAGDVMG------KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             -TSSEEEEEETTS------CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             -Cccccccccccc------cccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence             556667777444      79999999997653 2344444445555443         334456678899999999987


Q ss_pred             ccCCCCCeEEeccCCccccccccccceeEEE-EECCEEEEE-eCCeEEEeE
Q 012294          352 KLGDSSEWICLGDGRKMVNGKRKEGFGCKIE-CHANQVFCG-KGGEIELWS  400 (466)
Q Consensus       352 ~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~-~~~~~lf~~-~~~~~~v~~  400 (466)
                      +-..  . +..      +.. ...+- ..++ .-+++++.+ .++.|.+|.
T Consensus       246 ~~~~--~-~~~------~~~-h~~~V-~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         246 RPMK--I-IKA------LNA-HKDGV-NNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             CTTC--C-EEE------TTS-STTCE-EEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCe--E-EEE------eCC-CCCCe-EEEEECCCCEEEEEECCCeEEEEE
Confidence            6331  1 111      111 11212 2233 235666655 667899996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.29  E-value=0.77  Score=41.57  Aligned_cols=100  Identities=8%  Similarity=-0.080  Sum_probs=59.5

Q ss_pred             CeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC---cccceEEE
Q 012294          228 KHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS---KVTGNIKF  304 (466)
Q Consensus       228 ~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~---~~~~sVe~  304 (466)
                      ..||+...........|-++|.+|.+.+.++..-.           .-.+.|.+-+..||+++...+..   ...+.|.+
T Consensus        33 ~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-----------~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-----------LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-----------CccEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            35777222112225679999999976666554211           11345666566777765433211   13468999


Q ss_pred             EeCCCCeeeeEEcCCcccc-------cceeeecCCCceEEE
Q 012294          305 WDIRSGNVAWEVKDEVDCF-------SDVTVSDNLSAIYKV  338 (466)
Q Consensus       305 yDprt~~~vW~~~~~~d~~-------~~~~v~~~~~~i~~v  338 (466)
                      ||.++++++++...+....       ..+.++.++..+|..
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~  142 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF  142 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE
Confidence            9999999999987663222       234566677776643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.95  E-value=0.029  Score=50.37  Aligned_cols=66  Identities=12%  Similarity=0.090  Sum_probs=53.9

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc-CCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK-DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~-~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .++..+++++.+      ++|.+||..+++++.+.. +++..-.++++++|+..||+.+..++.|++.|+.+.
T Consensus         6 ~~~~~l~~~~~~------~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           6 AGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             TTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEEcCC------CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            467778888743      489999999999999886 334445688999999999988889999999999764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=94.87  E-value=1.3  Score=39.92  Aligned_cols=71  Identities=13%  Similarity=0.036  Sum_probs=45.5

Q ss_pred             eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----cccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294          278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL  353 (466)
Q Consensus       278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~  353 (466)
                      .+.+-+..+|++...+      +++.+||..++.+.|.....    ...........++...+.....++.+++.++...
T Consensus       171 ~~s~~g~~~~v~~~~d------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQ------GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             EEecCCCcEEEEEcCC------CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            3444566777777643      47899999999888876543    2222233344455556666677888888777764


Q ss_pred             C
Q 012294          354 G  354 (466)
Q Consensus       354 ~  354 (466)
                      +
T Consensus       245 ~  245 (373)
T d2madh_         245 G  245 (373)
T ss_pred             e
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.31  E-value=1.9  Score=39.47  Aligned_cols=243  Identities=12%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             CCcEEEEecccCCCc--eeccceeeeeCCCCceeecCCC--C---CceeEEEEE--CCeEEEEecCCCcCCCeeEEEecC
Q 012294          180 SPGVAAAGATDFSGL--QVLDLENGYVKETLNWENVTRS--S---STVQAIGSS--DKHLFVSFESGRRNSNSIMVYDIN  250 (466)
Q Consensus       180 ~~~lYaiGG~~~~g~--~~l~svE~ydp~t~~W~~va~M--r---~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~  250 (466)
                      ++.+|++..  ....  ..-..+-++||.+..++.....  .   ....++++.  ++.||+...     .+.+.++|++
T Consensus        28 dG~ly~~~~--~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-----~~~i~~~~~~  100 (314)
T d1pjxa_          28 NGDFYIVAP--EVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-----RLGLLVVQTD  100 (314)
T ss_dssp             TSCEEEEET--TCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----TTEEEEEETT
T ss_pred             CCCEEEEEC--ccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-----CCeEEEEeCC
Confidence            566777644  2110  1112466788888887665432  1   112225554  246888322     2468899998


Q ss_pred             CCCccccccccccc--cCCceeecCcceeeEEeeCCeEEEEeec--CCC-------CcccceEEEEeCCCCeeeeEEcCC
Q 012294          251 SLKPVNEIGQNEIY--GTDIESAIPATKLRWVSSYNLLLASGSH--SDI-------SKVTGNIKFWDIRSGNVAWEVKDE  319 (466)
Q Consensus       251 t~~~~~~~~~~~~~--~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~--~g~-------~~~~~sVe~yDprt~~~vW~~~~~  319 (466)
                      +       +.....  ..++-....+--+ .+.-+|.||+.-..  ...       ....+.|-++|+.........  .
T Consensus       101 g-------~~~~~~~~~~~g~~~~~pndl-~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~--~  170 (314)
T d1pjxa_         101 G-------TFEEIAKKDSEGRRMQGCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT--A  170 (314)
T ss_dssp             S-------CEEECCSBCTTSCBCBCCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE--E
T ss_pred             C-------cEEEEEeccccccccCCCcEE-EECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC--C
Confidence            7       111110  0011000001111 23357889986421  111       112346777777543221111  1


Q ss_pred             cccccceeeecCCC----ceEEEEEeeCceeEeeccccCC-CCCeEEeccCCccccccccccceeEEEE-ECCEEEEEe-
Q 012294          320 VDCFSDVTVSDNLS----AIYKVGINSGEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIEC-HANQVFCGK-  392 (466)
Q Consensus       320 ~d~~~~~~v~~~~~----~i~~v~~~~g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~-~~~~lf~~~-  392 (466)
                      ...=-.++++.++.    .||..-...+.|+..|+..-+. .+.-+ +..    ... ...+.--.+++ -+|.||++. 
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~-~~~----~~~-~~~~~pdGiavD~~GnlyVa~~  244 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV-WGH----IPG-THEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-EEE----CCC-CSSCEEEEEEEBTTCCEEEEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeE-EEE----ccc-cccccceeeEEecCCcEEEEEc
Confidence            00001345655544    5777666788888888875332 11111 111    111 01101123444 468899985 


Q ss_pred             -CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc--eeEEEeeccceEEEeccCCC
Q 012294          393 -GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN--KMFVTRKGQQTVEVWQSSSR  464 (466)
Q Consensus       393 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~--r~f~~~~~~~~~~vw~~~~~  464 (466)
                       ++.|.+|+.     +.    +.+...+ .         ......+.++||+|  +||||=.+...|..=+.+.+
T Consensus       245 ~~g~I~~~dp-----~~----g~~~~~i-~---------~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         245 GSSHIEVFGP-----DG----GQPKMRI-R---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTEEEEECT-----TC----BSCSEEE-E---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEeC-----CC----CEEEEEE-E---------CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence             677888752     11    1111111 1         12346899999987  49999777666655454444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.27  E-value=0.32  Score=46.22  Aligned_cols=97  Identities=16%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee--eEEc-
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA--WEVK-  317 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v--W~~~-  317 (466)
                      .++|-.||..|.+.+..+..     ++.     +..+...+ +|...++++.|      ++|.+||..|++..  .+.. 
T Consensus        41 dg~v~vwD~~t~~~~~~l~~-----g~~-----~~~vafSP-DGk~l~~~~~d------~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDT-----GYA-----VHISRMSA-SGRYLLVIGRD------ARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEEC-----CSS-----EEEEEECT-TSCEEEEEETT------SEEEEEETTSSSCEEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEeC-----CCC-----eeEEEECC-CCCEEEEEeCC------CCEEEEEccCCceeEEEEEeC
Confidence            56899999999777776654     111     22233333 45544555533      48999999998744  3332 


Q ss_pred             --CCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          318 --DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       318 --~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                        +|......++.++|+..||..+..++.+-+.|+....
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~  142 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  142 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence              2222223444567999999888899999888887755

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.59  Score=41.23  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             eEEE-EecCCCcCCCeeEEEecCC---CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294          229 HLFV-SFESGRRNSNSIMVYDINS---LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKF  304 (466)
Q Consensus       229 ~IYa-Gg~~g~~~l~sVE~YDp~t---~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~  304 (466)
                      .+|| +.+     .++|-+||..+   ++.+..+.+.          ..+..+.+.+-+..|||++..      .+.|..
T Consensus         5 ~v~v~~~~-----~~~I~v~~~~~~~~l~~~~~~~~~----------~~v~~la~spDG~~L~v~~~~------d~~i~~   63 (333)
T d1ri6a_           5 TVYIASPE-----SQQIHVWNLNHEGALTLTQVVDVP----------GQVQPMVVSPDKRYLYVGVRP------EFRVLA   63 (333)
T ss_dssp             EEEEEEGG-----GTEEEEEEECTTSCEEEEEEEECS----------SCCCCEEECTTSSEEEEEETT------TTEEEE
T ss_pred             EEEEECCC-----CCcEEEEEEcCCCCeEEEEEEcCC----------CCEeEEEEeCCCCEEEEEECC------CCeEEE
Confidence            3788 533     46788898765   2222222220          113345555666778888763      347999


Q ss_pred             EeCCCCe---eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294          305 WDIRSGN---VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR  351 (466)
Q Consensus       305 yDprt~~---~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr  351 (466)
                      |+...+.   .+......+..-..+++++++..||..+-.++.+.+.++.
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            9877664   2222222344446688999999999766566666555443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.95  E-value=0.72  Score=46.45  Aligned_cols=160  Identities=12%  Similarity=0.113  Sum_probs=89.6

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc-------ceeeEEeeCCeEEEEeecCCC
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA-------TKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-------~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      ++..+++||++..     ...+-+.|..|       |+      ..|.....       ....-+..++.+++.+. ...
T Consensus       113 ~~~~~~~v~~~~~-----~g~l~Alda~t-------G~------~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~-~~~  173 (560)
T d1kv9a2         113 VALWGDKVYVGTL-----DGRLIALDAKT-------GK------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG-GAE  173 (560)
T ss_dssp             CEEEBTEEEEECT-----TSEEEEEETTT-------CC------EEEEEECSCTTSSCBCCSCCEEETTEEEECCB-CTT
T ss_pred             cceeCCeEEEEeC-----CCEEEEEECCC-------Cc------EEeccCccCcccceeeeeeeeeecCccccccc-cee
Confidence            6778899999543     24578889988       44      22443221       11122346788776443 222


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCC-------------------------------cccccceeeecCCCceEEEEEe---
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDE-------------------------------VDCFSDVTVSDNLSAIYKVGIN---  341 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~-------------------------------~d~~~~~~v~~~~~~i~~v~~~---  341 (466)
                      ....+.|..||.+|++.+|++.--                               ...-..++++++.+.+|..-++   
T Consensus       174 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~  253 (560)
T d1kv9a2         174 YGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSP  253 (560)
T ss_dssp             TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred             ccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcc
Confidence            335679999999999999998521                               1123346778888888854432   


Q ss_pred             ---------------eCceeEeeccccCC--------CCCeEEeccCCccccccccccceeEEEEEC---CEEEEEe-CC
Q 012294          342 ---------------SGEVSYMDLRKLGD--------SSEWICLGDGRKMVNGKRKEGFGCKIECHA---NQVFCGK-GG  394 (466)
Q Consensus       342 ---------------~g~l~~~dlr~~~~--------~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~---~~lf~~~-~~  394 (466)
                                     .+.|..+|+++.+.        +|.|-+=....+.+......+...++..+.   |.||+.. ..
T Consensus       254 ~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~t  333 (560)
T d1kv9a2         254 WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (560)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCC
Confidence                           34577788887662        456653333222211101122333444333   5788863 22


Q ss_pred             eEEEeEe
Q 012294          395 EIELWSE  401 (466)
Q Consensus       395 ~~~v~~~  401 (466)
                      .=.+|..
T Consensus       334 G~~i~~~  340 (560)
T d1kv9a2         334 GKLISAE  340 (560)
T ss_dssp             CCEEEEE
T ss_pred             Ccccccc
Confidence            2235554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.37  Score=42.68  Aligned_cols=105  Identities=11%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             CeEEEEeecCCCCcccceEEEEeCCCCeee--eEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294          284 NLLLASGSHSDISKVTGNIKFWDIRSGNVA--WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC  361 (466)
Q Consensus       284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v--W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~  361 (466)
                      -.+||++..      .++|.+||..++...  =...++.....++++++||..||+.+..++.+.+.++......  =..
T Consensus         4 ~~v~v~~~~------~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--~~~   75 (333)
T d1ri6a_           4 QTVYIASPE------SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--LTF   75 (333)
T ss_dssp             EEEEEEEGG------GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--EEE
T ss_pred             eEEEEECCC------CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--EEE
Confidence            357898873      458999997665322  2223455566889999999999977777899888887664421  011


Q ss_pred             eccCCccccccccccceeEEEEECCEEEEEe--CCeEEEeEe
Q 012294          362 LGDGRKMVNGKRKEGFGCKIECHANQVFCGK--GGEIELWSE  401 (466)
Q Consensus       362 ~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~~  401 (466)
                      +..   ......+  ++..+.--+.+||++.  ++.|.+|..
T Consensus        76 ~~~---~~~~~~p--~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          76 AAE---SALPGSL--THISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EEE---EECSSCC--SEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eee---cccCCCc--eEEEEcCCCCEEeecccCCCceeeecc
Confidence            111   0010001  2333333356788884  556777664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.55  E-value=0.29  Score=45.29  Aligned_cols=100  Identities=12%  Similarity=0.053  Sum_probs=66.0

Q ss_pred             CCeeEEEecCCCCccccccccccccCCceeecC--cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294          241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD  318 (466)
Q Consensus       241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~  318 (466)
                      .+.|.+||+.|.+++.++.-..    .......  +-.+.+.+-+..||+....      .+.+.+||..+++++.+..-
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~----~~~~~~g~~p~~~a~SpDGk~l~va~~~------~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPD----APRFSVGPRVHIIGNCASSACLLFFLFG------SSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETT----SCSCCBSCCTTSEEECTTSSCEEEEECS------SSCEEEEEETTTEEEEEEEC
T ss_pred             CCeEEEEECCCCcEeeeecCCc----cceecccCCccceEECCCCCEEEEEeCC------CCeEEEEECCCCcEeEEeec
Confidence            5679999999988877765322    1111111  2234555556677776542      34799999999998888755


Q ss_pred             CcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      +.+.    .+...+...|.....+|.+.+.++...+
T Consensus       165 ~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         165 ASCF----HIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             SSCC----CCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             cCcc----eEccCCCceEEEEcCCCCEEEEEecCCc
Confidence            5321    2445666677777789999888887755

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.52  E-value=1.1  Score=43.08  Aligned_cols=155  Identities=12%  Similarity=0.019  Sum_probs=88.0

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEE-----CC-eEEE-EecCCCcCCCeeEEEec
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSS-----DK-HLFV-SFESGRRNSNSIMVYDI  249 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l-----~~-~IYa-Gg~~g~~~l~sVE~YDp  249 (466)
                      -+|+..++++  .+|     ++..+|..+.+-..+..+  ......++..     || .||| +..     .++|-.||.
T Consensus        71 pDG~~l~~~s--~dg-----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~-----~~~v~i~d~  138 (432)
T d1qksa2          71 ASGRYLFVIG--RDG-----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-----PPQYVIMDG  138 (432)
T ss_dssp             TTSCEEEEEE--TTS-----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----TTEEEEEET
T ss_pred             CCCCEEEEEc--CCC-----CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC-----CCeEEEEeC
Confidence            5677666666  443     567788777664444333  1122223332     44 5888 443     467899999


Q ss_pred             CCCCccccccccccccCCceeecCccee--eE--EeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcccc
Q 012294          250 NSLKPVNEIGQNEIYGTDIESAIPATKL--RW--VSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVDCF  323 (466)
Q Consensus       250 ~t~~~~~~~~~~~~~~~~~w~~~~~~k~--~~--~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d~~  323 (466)
                      .+.+++..+....... +. ....+...  ..  .+-+..+|++..      ..+.|..+|..+.+  .+|+. +.+..-
T Consensus       139 ~t~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~s~dg~~~~vs~~------~~~~i~~~d~~~~~~~~~~~i-~~g~~~  209 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTY-DE-QEYHPEPRVAAILASHYRPEFIVNVK------ETGKILLVDYTDLNNLKTTEI-SAERFL  209 (432)
T ss_dssp             TTCCEEEEEECCEECT-TT-CCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEETTCSSEEEEEEE-ECCSSE
T ss_pred             ccccceeeeccCCccc-cc-eeccCCCceeEEEECCCCCEEEEEEc------cCCeEEEEEccCCCcceEEEE-cccCcc
Confidence            9966665543322000 00 00001110  01  112334444443      24578899987765  34664 234455


Q ss_pred             cceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          324 SDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       324 ~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      .++++++++..+|..+..++.+.+.|++...
T Consensus       210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         210 HDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             ccceECCCCCEEEEeccccceEEEeecccce
Confidence            6889999999999888888999999987643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=1.5  Score=39.39  Aligned_cols=144  Identities=11%  Similarity=0.076  Sum_probs=85.9

Q ss_pred             EEE--ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc
Q 012294          223 IGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG  300 (466)
Q Consensus       223 va~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~  300 (466)
                      +|+  +++.||..-.    ..++|+++++........+..      +.   ..|..+...+..|.||.+-.  |   ...
T Consensus        82 lAvD~~~~~lY~~d~----~~~~I~v~~~~g~~~~~~~~~------~~---~~P~~l~vd~~~g~ly~~~~--~---~~~  143 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDS----VLGTVSVADTKGVKRKTLFRE------NG---SKPRAIVVDPVHGFMYWTDW--G---TPA  143 (266)
T ss_dssp             EEEETTTTEEEEEET----TTTEEEEEETTSSSEEEEEEC------TT---CCEEEEEEETTTTEEEEEEC--S---SSC
T ss_pred             EEEeeccceEEEEec----CCCEEEeEecCCceEEEEEcC------CC---CCcceEEEEcccCeEEEecc--C---CCc
Confidence            565  5889999211    246899999987221111110      00   12445556667999999864  2   234


Q ss_pred             eEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeE
Q 012294          301 NIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCK  380 (466)
Q Consensus       301 sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~  380 (466)
                      .|++.+....++.=-..+....-.+++++..+..||.+-...+.+..+|+..-++.   +-+.. ..      .-..-..
T Consensus       144 ~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~---~~~~~-~~------~~~~p~~  213 (266)
T d1ijqa1         144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILED-EK------RLAHPFS  213 (266)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEEC-TT------TTSSEEE
T ss_pred             ceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE---EEEeC-CC------cccccEE
Confidence            69999987654221112222333678899999999988778888888888543320   11111 00      0113457


Q ss_pred             EEEECCEEEEEeCC
Q 012294          381 IECHANQVFCGKGG  394 (466)
Q Consensus       381 ~~~~~~~lf~~~~~  394 (466)
                      |++++++||.+-.+
T Consensus       214 lav~~~~ly~td~~  227 (266)
T d1ijqa1         214 LAVFEDKVFWTDII  227 (266)
T ss_dssp             EEEETTEEEEEETT
T ss_pred             EEEECCEEEEEECC
Confidence            99999999998543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.24  E-value=0.54  Score=47.97  Aligned_cols=84  Identities=15%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--------------------------------------cc
Q 012294          280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--------------------------------------VD  321 (466)
Q Consensus       280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--------------------------------------~d  321 (466)
                      +..+|+||+-.. .......+.|..||.+|++.+|.+...                                      ..
T Consensus       163 ~v~~~~vivg~~-~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~  241 (596)
T d1w6sa_         163 YVVKDKVIIGSS-GAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGT  241 (596)
T ss_dssp             EEETTEEEECCB-CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCC
T ss_pred             cEECCeEEEeec-cccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCc
Confidence            347888887432 222235689999999999999987421                                      11


Q ss_pred             cccceeeecCCCceEEEEEe---------------eCceeEeeccccCC--------CCCeEEecc
Q 012294          322 CFSDVTVSDNLSAIYKVGIN---------------SGEVSYMDLRKLGD--------SSEWICLGD  364 (466)
Q Consensus       322 ~~~~~~v~~~~~~i~~v~~~---------------~g~l~~~dlr~~~~--------~~~W~~~~~  364 (466)
                      .-..++++++.+.+|..-+.               ++.|..+|+++-+.        +|.|-+-..
T Consensus       242 ~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~  307 (596)
T d1w6sa_         242 NWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGV  307 (596)
T ss_dssp             CCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred             cccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccc
Confidence            23566888899999976542               45678899988552        666654443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.15  E-value=0.25  Score=50.13  Aligned_cols=112  Identities=11%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCC----------CCceeEEEEECCeEEEEecCCCcCCCeeEE
Q 012294          179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRS----------SSTVQAIGSSDKHLFVSFESGRRNSNSIMV  246 (466)
Q Consensus       179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~M----------r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~  246 (466)
                      .++.||+...  .+      .+-++|+++.  .|+.-+..          .....+++..+++||++..     ...+-+
T Consensus        76 ~~g~vyv~t~--~~------~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-----~g~l~a  142 (573)
T d1kb0a2          76 VDGIMYVSAS--WS------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-----DGRLIA  142 (573)
T ss_dssp             ETTEEEEECG--GG------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-----TSEEEE
T ss_pred             ECCEEEEECC--CC------eEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-----ccceee
Confidence            7899998766  33      2344555543  46532221          1111236788999999543     235678


Q ss_pred             EecCCCCccccccccccccCCceeecCc--------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294          247 YDINSLKPVNEIGQNEIYGTDIESAIPA--------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK  317 (466)
Q Consensus       247 YDp~t~~~~~~~~~~~~~~~~~w~~~~~--------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~  317 (466)
                      .|.+|       |+      ..|+....        +.-.-+..++.+|+- +........+.|..||.+|++.+|++.
T Consensus       143 lda~t-------G~------~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg-~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         143 LDAAT-------GK------EVWHQNTFEGQKGSLTITGAPRVFKGKVIIG-NGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EETTT-------CC------EEEEEETTTTCCSSCBCCSCCEEETTEEEEC-CBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ecccc-------cc------ceecccCccCCcceEEeecceEEEeccEEEe-eccccccccceEEEEecCCccceeeee
Confidence            89999       44      22443210        011123467777763 333333356799999999999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.93  E-value=3.7  Score=38.31  Aligned_cols=135  Identities=11%  Similarity=-0.058  Sum_probs=74.0

Q ss_pred             ceeeeeCCCCceeecCCC--CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCc--cccccccccccCCceeec
Q 012294          199 LENGYVKETLNWENVTRS--SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKP--VNEIGQNEIYGTDIESAI  272 (466)
Q Consensus       199 svE~ydp~t~~W~~va~M--r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~--~~~~~~~~~~~~~~w~~~  272 (466)
                      ++...|..+.+  .+..+  ...+.+++.. || .||+++.     .++|-+||..|.++  +.++....  +...+.  
T Consensus        43 ~v~vwD~~t~~--~~~~l~~g~~~~~vafSPDGk~l~~~~~-----d~~v~vwd~~t~~~~~~~~i~~~~--~~~~~~--  111 (426)
T d1hzua2          43 QIALVDGDSKK--IVKVIDTGYAVHISRMSASGRYLLVIGR-----DARIDMIDLWAKEPTKVAEIKIGI--EARSVE--  111 (426)
T ss_dssp             EEEEEETTTCS--EEEEEECCSSEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCEEEEEEECCS--EEEEEE--
T ss_pred             EEEEEECCCCc--EEEEEeCCCCeeEEEECCCCCEEEEEeC-----CCCEEEEEccCCceeEEEEEeCCC--CCcceE--
Confidence            34555666554  33333  2334456666 44 4777554     34789999998331  11111100  000000  


Q ss_pred             CcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294          273 PATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK  352 (466)
Q Consensus       273 ~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~  352 (466)
                        ....+.+-+..||+.+..      .+++..||..+++++.....+....-.+....++...+.+...++......++.
T Consensus       112 --~s~~~spDG~~l~v~~~~------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         112 --SSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             --ECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             --EeeeecCCCCEEEEeecC------CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence              001111234567777663      347999999999999888776544445556666666666666666665555443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.65  E-value=0.9  Score=40.57  Aligned_cols=69  Identities=14%  Similarity=0.021  Sum_probs=52.0

Q ss_pred             eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE---------eeCceeEeeccc
Q 012294          282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI---------NSGEVSYMDLRK  352 (466)
Q Consensus       282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~---------~~g~l~~~dlr~  352 (466)
                      -...|||.....+.  ..+.|.+||..+++++++......  ..+++++|+..||..+.         .+|.|.+.|+.+
T Consensus        12 dg~~~~v~~~~~~~--~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          12 DARRVYVNDPAHFA--AVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CTTEEEEEECGGGC--SSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCEEEEEecccCC--CcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            45567887654342  355799999999999998864432  35789999999998754         478899999988


Q ss_pred             cC
Q 012294          353 LG  354 (466)
Q Consensus       353 ~~  354 (466)
                      ..
T Consensus        88 ~~   89 (355)
T d2bbkh_          88 LL   89 (355)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.38  E-value=1.9  Score=43.10  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=44.9

Q ss_pred             eeCCeEEEEeecC------------CCCcccceEEEEeCCCCeeeeEEcCC------ccccc---ceeeecCCC--ceEE
Q 012294          281 SSYNLLLASGSHS------------DISKVTGNIKFWDIRSGNVAWEVKDE------VDCFS---DVTVSDNLS--AIYK  337 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~------------g~~~~~~sVe~yDprt~~~vW~~~~~------~d~~~---~~~v~~~~~--~i~~  337 (466)
                      +..+++|+..|..            |...+.++|-..|++|++++|.....      .|+-.   -+.+..++.  .+..
T Consensus       239 ~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~  318 (560)
T d1kv9a2         239 PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLM  318 (560)
T ss_dssp             TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEE
T ss_pred             cccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeee
Confidence            4678888866643            22335678999999999999987543      11111   122222333  2333


Q ss_pred             EEEeeCceeEeecccc
Q 012294          338 VGINSGEVSYMDLRKL  353 (466)
Q Consensus       338 v~~~~g~l~~~dlr~~  353 (466)
                      +..++|.+|+.|-.+-
T Consensus       319 ~~~k~G~~~~lDr~tG  334 (560)
T d1kv9a2         319 QAPKNGFFYVLDRTNG  334 (560)
T ss_dssp             ECCTTSEEEEEETTTC
T ss_pred             ecCccceEEEEecCCC
Confidence            4558899999986653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.31  E-value=3.5  Score=41.30  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=46.3

Q ss_pred             eeCCeEEEEeecCCC---------CcccceEEEEeCCCCeeeeEEcCC------cccccc---eeeecCCCceEE--EEE
Q 012294          281 SSYNLLLASGSHSDI---------SKVTGNIKFWDIRSGNVAWEVKDE------VDCFSD---VTVSDNLSAIYK--VGI  340 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~g~---------~~~~~sVe~yDprt~~~vW~~~~~------~d~~~~---~~v~~~~~~i~~--v~~  340 (466)
                      +..+++|+..+...+         ..+.+++=..|.+|++.+|.....      -|+...   +.+..++.....  ...
T Consensus       244 ~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~  323 (571)
T d2ad6a1         244 PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID  323 (571)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC
T ss_pred             hhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc
Confidence            467888887774432         224568999999999999998743      121111   123334444322  334


Q ss_pred             eeCceeEeeccccC
Q 012294          341 NSGEVSYMDLRKLG  354 (466)
Q Consensus       341 ~~g~l~~~dlr~~~  354 (466)
                      ++|.||++|-.+-+
T Consensus       324 k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         324 RNGILYTLNRENGN  337 (571)
T ss_dssp             TTSEEEEEETTTCC
T ss_pred             ccceEEEEecCCCc
Confidence            88999999976643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.08  E-value=1  Score=45.40  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-c------ceeeEEeeCCeEEEEeecCCC
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-A------TKLRWVSSYNLLLASGSHSDI  295 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-~------~k~~~~~~~~~Lyv~Gg~~g~  295 (466)
                      ++..+++||++..     ...+-+.|.+|       |+.      .|..-- .      ....-+..++.+|+.+. ...
T Consensus       111 ~a~~~~~i~~~~~-----~g~l~alda~t-------G~~------~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~-~~~  171 (571)
T d2ad6a1         111 LAYGAGQIVKKQA-----NGHLLALDAKT-------GKI------NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS-GAE  171 (571)
T ss_dssp             CEEETTEEEEECT-----TSEEEEEETTT-------CCE------EEEEECCCGGGTCBCCSCCEEETTEEEEECB-CGG
T ss_pred             ceeeCCeEEEEeC-----CCcEEeeehhh-------hhh------hccccccccccccceeecCeEeCCeEEEeec-ccc
Confidence            6778999999543     24577889999       542      244311 1      11122357888887554 222


Q ss_pred             CcccceEEEEeCCCCeeeeEEcCCc--------------------------------------ccccceeeecCCCceEE
Q 012294          296 SKVTGNIKFWDIRSGNVAWEVKDEV--------------------------------------DCFSDVTVSDNLSAIYK  337 (466)
Q Consensus       296 ~~~~~sVe~yDprt~~~vW~~~~~~--------------------------------------d~~~~~~v~~~~~~i~~  337 (466)
                      ....+.|..||.+|++.+|.+....                                      ..-..++++++.+.+|.
T Consensus       172 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~  251 (571)
T d2ad6a1         172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY  251 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeee
Confidence            3357799999999999999864320                                      01134577888888885


Q ss_pred             EEEe---------------eCceeEeeccccC
Q 012294          338 VGIN---------------SGEVSYMDLRKLG  354 (466)
Q Consensus       338 v~~~---------------~g~l~~~dlr~~~  354 (466)
                      ..+.               ...++.+|+++-+
T Consensus       252 ~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~  283 (571)
T d2ad6a1         252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM  283 (571)
T ss_dssp             ECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred             ecccccCccccccccccccccceeeeeccchh
Confidence            5542               4567788888755

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.08  E-value=3.1  Score=41.69  Aligned_cols=157  Identities=14%  Similarity=0.102  Sum_probs=88.3

Q ss_pred             EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc--------ceeeEE----eeCCeEEEEe
Q 012294          223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA--------TKLRWV----SSYNLLLASG  290 (466)
Q Consensus       223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--------~k~~~~----~~~~~Lyv~G  290 (466)
                      ++..++.||+|..     ...+-+.|..|       |+.      .|+....        +....+    ...+.+++.|
T Consensus       113 ~a~~~~~i~~~t~-----~~~l~alda~t-------G~~------~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g  174 (582)
T d1flga_         113 AAIYGDKVFFGTL-----DASVVALNKNT-------GKV------VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHG  174 (582)
T ss_dssp             CEEETTEEEEEET-----TTEEEEEESSS-------CCE------EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEEC
T ss_pred             ceEeCCceEEecC-----CCeEEEecccc-------cce------eeeecccCCCccceeecCceEecCCcEeEEEEEeC
Confidence            6778999999544     34577889999       442      2432211        001111    1233444444


Q ss_pred             ecCCCCcccceEEEEeCCCCeeeeEEcCC-----------------------------------------cccccceeee
Q 012294          291 SHSDISKVTGNIKFWDIRSGNVAWEVKDE-----------------------------------------VDCFSDVTVS  329 (466)
Q Consensus       291 g~~g~~~~~~sVe~yDprt~~~vW~~~~~-----------------------------------------~d~~~~~~v~  329 (466)
                      ...+.....+.|..+|++|++.+|++.-.                                         +..-+.++++
T Consensus       175 ~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D  254 (582)
T d1flga_         175 SSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD  254 (582)
T ss_dssp             CBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE
T ss_pred             ccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceec
Confidence            33233345678999999999999986321                                         1112447888


Q ss_pred             cCCCceEEEEEe-----------------------eCceeEeeccccCC--------CCCeEEeccCCcc---ccccccc
Q 012294          330 DNLSAIYKVGIN-----------------------SGEVSYMDLRKLGD--------SSEWICLGDGRKM---VNGKRKE  375 (466)
Q Consensus       330 ~~~~~i~~v~~~-----------------------~g~l~~~dlr~~~~--------~~~W~~~~~~~~~---m~~~~~~  375 (466)
                      ++.+.||..-+.                       +..|..+|+++-+.        +|.|-+=....+.   +.. ..+
T Consensus       255 ~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~-~~g  333 (582)
T d1flga_         255 AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKA-KDG  333 (582)
T ss_dssp             TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEEC-SSS
T ss_pred             cccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhccccccccccccccccccccccccc-ccc
Confidence            899998865432                       34577788887653        6777655543333   111 011


Q ss_pred             cce--eEEEEECCEEEEEeCCeEEE
Q 012294          376 GFG--CKIECHANQVFCGKGGEIEL  398 (466)
Q Consensus       376 ~~~--~~~~~~~~~lf~~~~~~~~v  398 (466)
                      ...  .......++||+..-.+-|+
T Consensus       334 ~~~~~v~~~~k~g~~~vldr~tG~~  358 (582)
T d1flga_         334 KIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             CEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccceeEeecccccEEeecccCCcc
Confidence            111  22233568888885544444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.91  E-value=0.64  Score=41.63  Aligned_cols=78  Identities=9%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             eeeEEeeCCeEEEEeecCCCC---cccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc-eEEEEEeeCceeEeecc
Q 012294          276 KLRWVSSYNLLLASGSHSDIS---KVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA-IYKVGINSGEVSYMDLR  351 (466)
Q Consensus       276 k~~~~~~~~~Lyv~Gg~~g~~---~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~-i~~v~~~~g~l~~~dlr  351 (466)
                      .+.+..-...+|+.....+..   .....|..||+.+++.+.++... .....+++++|+.. +|+.+..++.|++.|++
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            344555666777765433321   12347999999999998776432 23457889999986 56566689999999998


Q ss_pred             ccC
Q 012294          352 KLG  354 (466)
Q Consensus       352 ~~~  354 (466)
                      +.+
T Consensus       332 tg~  334 (355)
T d2bbkh_         332 SGE  334 (355)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            855

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.44  E-value=6.8  Score=34.82  Aligned_cols=143  Identities=8%  Similarity=0.029  Sum_probs=85.0

Q ss_pred             EEEE--ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCccc
Q 012294          222 AIGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVT  299 (466)
Q Consensus       222 Ava~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~  299 (466)
                      ++|+  ++++||..-.    ..+.|++.++........+..      +   ...|..+..-+..+.||.+-.  |.  ..
T Consensus        83 ~iAvD~~~~~lY~~d~----~~~~I~~~~~dg~~~~~l~~~------~---l~~p~~l~vdp~~g~ly~t~~--~~--~~  145 (263)
T d1npea_          83 GIALDHLGRTIFWTDS----QLDRIEVAKMDGTQRRVLFDT------G---LVNPRGIVTDPVRGNLYWTDW--NR--DN  145 (263)
T ss_dssp             EEEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEECS------S---CSSEEEEEEETTTTEEEEEEC--CS--SS
T ss_pred             EEEEeccCCeEEEecc----CCCEEEEEecCCceEEEEecc------c---ccCCcEEEEecccCcEEEeec--CC--CC
Confidence            4666  4889998221    256899999987221111111      1   112455666678999998754  11  12


Q ss_pred             ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccccee
Q 012294          300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGC  379 (466)
Q Consensus       300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~  379 (466)
                      ..|++-+....+..=-..+....-.+++++..+..||.+-...+.+..+|+....+.    .+..   ...      .-.
T Consensus       146 ~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~----~v~~---~~~------~P~  212 (263)
T d1npea_         146 PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLE---GLQ------YPF  212 (263)
T ss_dssp             CEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEE---CCC------SEE
T ss_pred             cEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE----EEEC---CCC------CcE
Confidence            358888876654211111222222467888889999988888889888888654421    1111   011      224


Q ss_pred             EEEEECCEEEEEeCC
Q 012294          380 KIECHANQVFCGKGG  394 (466)
Q Consensus       380 ~~~~~~~~lf~~~~~  394 (466)
                      .|+.++++||.+.-+
T Consensus       213 ~lav~~~~lYwtd~~  227 (263)
T d1npea_         213 AVTSYGKNLYYTDWK  227 (263)
T ss_dssp             EEEEETTEEEEEETT
T ss_pred             EEEEECCEEEEEECC
Confidence            699999999999543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.31  E-value=6.6  Score=35.53  Aligned_cols=185  Identities=10%  Similarity=0.022  Sum_probs=89.7

Q ss_pred             cCCcEEEE--cCCceeeEecCCCC-----CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeec
Q 012294          141 NYGTLHVS--HGSKITSFDWSMRK-----KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENV  213 (466)
Q Consensus       141 ~~g~lyva--~GG~ve~YDW~~a~-----m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~v  213 (466)
                      .+|.||++  .+|.+.+||.....     ........+.+.   --++.+|++.-..+   .....+...++.+......
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~---~~dG~l~va~~~~~---~~~~~i~~~~~~~~~~~~~  122 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI---HKDGRLFVCYLGDF---KSTGGIFAATENGDNLQDI  122 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE---CTTSCEEEEECTTS---SSCCEEEEECTTSCSCEEE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEE---CCCCCEEEEecCCC---ccceeEEEEcCCCceeeee
Confidence            56788865  34566666621100     011111223222   14688998753111   1122344556666554333


Q ss_pred             C-CC----CCceeEEEEECCeEEEEecCC--CcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294          214 T-RS----SSTVQAIGSSDKHLFVSFESG--RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL  286 (466)
Q Consensus       214 a-~M----r~~~~Ava~l~~~IYaGg~~g--~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L  286 (466)
                      . ..    +.+-. +..-+|.||++-..+  ......+.++||..- .+..+...         ...|-.+.|-+-++.|
T Consensus       123 ~~~~~~~~~~nd~-~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~---------~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         123 IEDLSTAYCIDDM-VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN---------ISVANGIALSTDEKVL  191 (319)
T ss_dssp             ECSSSSCCCEEEE-EECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE---------ESSEEEEEECTTSSEE
T ss_pred             ccCCCcccCCcce-eEEeccceeecccccccccCcceeEEEecccc-eeEEEeec---------cceeeeeeeccccceE
Confidence            2 22    22322 344577899932212  122567888998761 11111000         0012223444456689


Q ss_pred             EEEeecCCCCcccceEEEEeCCCCe-eeeEEcCC------cc-cccceeeecCCCceEEEEEeeCceeEee
Q 012294          287 LASGSHSDISKVTGNIKFWDIRSGN-VAWEVKDE------VD-CFSDVTVSDNLSAIYKVGINSGEVSYMD  349 (466)
Q Consensus       287 yv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~~~~------~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~d  349 (466)
                      |++-.      ..+.|.+||...+. ..+.....      .. .--+|+++.+|+ ||+.....|.|.+.|
T Consensus       192 yvad~------~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         192 WVTET------TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEG------GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred             EEecc------cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEEC
Confidence            98865      24478999865442 11211110      00 012477777775 887777778877665

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.33  E-value=18  Score=36.06  Aligned_cols=72  Identities=18%  Similarity=0.100  Sum_probs=45.6

Q ss_pred             eeCCeEEEEeecCCCC---------cccceEEEEeCCCCeeeeEEcCC------cccccceeee---cCCCceEEEEE--
Q 012294          281 SSYNLLLASGSHSDIS---------KVTGNIKFWDIRSGNVAWEVKDE------VDCFSDVTVS---DNLSAIYKVGI--  340 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~g~~---------~~~~sVe~yDprt~~~vW~~~~~------~d~~~~~~v~---~~~~~i~~v~~--  340 (466)
                      +..+++|+..|...+.         .+.++|=..|++|++++|.....      -|+-+.+.+.   ..++...++.+  
T Consensus       250 ~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~  329 (596)
T d1w6sa_         250 PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP  329 (596)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceecc
Confidence            4788999987754332         24678999999999999977533      2333333322   12233333333  


Q ss_pred             -eeCceeEeeccc
Q 012294          341 -NSGEVSYMDLRK  352 (466)
Q Consensus       341 -~~g~l~~~dlr~  352 (466)
                       ++|.+|+.|-++
T Consensus       330 ~k~G~~~vlDr~t  342 (596)
T d1w6sa_         330 DRNGIVYTLDRTD  342 (596)
T ss_dssp             CTTSEEEEEETTT
T ss_pred             ccccceeeecCCC
Confidence             778899998655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=85.13  E-value=12  Score=33.05  Aligned_cols=61  Identities=15%  Similarity=0.026  Sum_probs=34.1

Q ss_pred             eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc--CCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294          281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK--DEVDCFSDVTVSDNLSAIYKVGINSGEVSYM  348 (466)
Q Consensus       281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~--~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~  348 (466)
                      ..++.||++...      .+.|.++|...+...-+..  .....--+++++.+|. ||.....++.|...
T Consensus       172 ~~~~~l~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i  234 (302)
T d2p4oa1         172 RFGNFLYVSNTE------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRI  234 (302)
T ss_dssp             EETTEEEEEETT------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEE
T ss_pred             ccCCceeeecCC------CCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEE
Confidence            357788887662      3478889877664321110  0122223466777764 67555556666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.13  E-value=2.1  Score=38.97  Aligned_cols=85  Identities=6%  Similarity=-0.058  Sum_probs=58.7

Q ss_pred             eeecCcceeeEEeeCCeEEEEeecCCCCc--ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC-ceEEEEEeeCce
Q 012294          269 ESAIPATKLRWVSSYNLLLASGSHSDISK--VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS-AIYKVGINSGEV  345 (466)
Q Consensus       269 w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~--~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~-~i~~v~~~~g~l  345 (466)
                      |.....-.+.+....+.+|+..-.++...  ....|.+||..+++++-++. .+.....+++++|+. .||..+..++.|
T Consensus       261 ~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeE
Confidence            44333334556667888988754333211  22369999999999886553 234456789999986 478888889999


Q ss_pred             eEeeccccC
Q 012294          346 SYMDLRKLG  354 (466)
Q Consensus       346 ~~~dlr~~~  354 (466)
                      ++.|+.+.+
T Consensus       340 ~v~D~~tgk  348 (368)
T d1mdah_         340 DIYDAASDQ  348 (368)
T ss_dssp             EEEESSSCE
T ss_pred             EEEECCCCC
Confidence            999988754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=83.67  E-value=1.6  Score=38.45  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=50.3

Q ss_pred             ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294          275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG  354 (466)
Q Consensus       275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~  354 (466)
                      ..+.|.+-+..|+.+|..+|     ..|.+||.+++++. .+.++......+..++++..|. .+..++.+++.|+....
T Consensus        46 ~~~~~spDg~~l~~~~~~~g-----~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          46 RYVRRGGDTKVAFIHGTREG-----DFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAV-VANDRFEIMTVDLETGK  118 (360)
T ss_dssp             EEEEECSSSEEEEEEEETTE-----EEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEE-EEETTSEEEEEETTTCC
T ss_pred             EEEEECCCCCEEEEEEcCCC-----CEEEEEECCCCcEE-EeeCCCceEEeeeecccccccc-eeccccccccccccccc
Confidence            34567664455555565333     26999999999854 4445555567788999988755 67788888888886643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.61  E-value=16  Score=31.35  Aligned_cols=117  Identities=13%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             eeeCCCCceeecCCCCCceeEEEEEC-Ce-EEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee
Q 012294          202 GYVKETLNWENVTRSSSTVQAIGSSD-KH-LFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR  278 (466)
Q Consensus       202 ~ydp~t~~W~~va~Mr~~~~Ava~l~-~~-IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~  278 (466)
                      .||........++.- ..+.+++... ++ |+. |.+++    ..+-+||.++-+......+..          ....+.
T Consensus        28 v~d~~~~~~~~~~~~-~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~----------~v~~~~   92 (360)
T d1k32a3          28 IQDVSGTYVLKVPEP-LRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLG----------NVFAMG   92 (360)
T ss_dssp             EECTTSSBEEECSCC-SCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCC----------SEEEEE
T ss_pred             EEECCCCcEEEccCC-CCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCc----------eEEeee
Confidence            345555555444332 2233355554 43 544 55432    468899999833222222211          112344


Q ss_pred             EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE
Q 012294          279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI  340 (466)
Q Consensus       279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~  340 (466)
                      |.+ ++..+++++.      .+.+..||..++++.-....+.....+++.++++..|.....
T Consensus        93 ~sp-dg~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          93 VDR-NGKFAVVAND------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             ECT-TSSEEEEEET------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             ecc-cccccceecc------ccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            554 5555555553      347999999999987777777666778889999988764443