Citrus Sinensis ID: 012300
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| 359480611 | 492 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.943 | 0.821 | 0.0 | |
| 255568607 | 499 | beta-glucanase, putative [Ricinus commun | 1.0 | 0.933 | 0.832 | 0.0 | |
| 296087306 | 434 | unnamed protein product [Vitis vinifera] | 0.922 | 0.990 | 0.784 | 0.0 | |
| 449525981 | 478 | PREDICTED: uncharacterized LOC101203100 | 0.993 | 0.968 | 0.778 | 0.0 | |
| 449460584 | 478 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.968 | 0.776 | 0.0 | |
| 356496991 | 465 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.965 | 0.783 | 0.0 | |
| 356541615 | 465 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.965 | 0.786 | 0.0 | |
| 357482577 | 472 | hypothetical protein MTR_5g015460 [Medic | 0.997 | 0.985 | 0.766 | 0.0 | |
| 297816238 | 465 | glycosyl hydrolase family protein 43 [Ar | 0.974 | 0.976 | 0.720 | 0.0 | |
| 359806330 | 465 | uncharacterized protein LOC100813539 [Gl | 0.959 | 0.961 | 0.741 | 0.0 |
| >gi|359480611|ref|XP_003632499.1| PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/465 (82%), Positives = 426/465 (91%), Gaps = 1/465 (0%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHN 60
MRMRNKY+KPTTF CNAGS+CS+S+++W L GFLL++HF+SL HKDG G +L +SH+
Sbjct: 24 MRMRNKYRKPTTFRCNAGSRCSLSVMVWSLVGFLLMIHFYSLSRHKDGAGGHSQLQMSHH 83
Query: 61 -PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKT 119
P REL +VEEENIQIPPP+GKRSPRAAKRRPKR TTLIDEFLDE+SQ+RH+FFPD KT
Sbjct: 84 HPLLRELEQVEEENIQIPPPKGKRSPRAAKRRPKRPTTLIDEFLDESSQIRHLFFPDQKT 143
Query: 120 AIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAH 179
AIDPM++ GNDSF YYPGRIWLDT+G PIQAHGGGILYD+RSR Y+WYGEYKDGPTYHAH
Sbjct: 144 AIDPMQEAGNDSFCYYPGRIWLDTDGNPIQAHGGGILYDKRSRMYYWYGEYKDGPTYHAH 203
Query: 180 KKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGK 239
KKAAARVDIIGVGCYSSKD+WTWK EGIVLAAEET+E HDL+K NVLERPKVIYNDRTGK
Sbjct: 204 KKAAARVDIIGVGCYSSKDLWTWKFEGIVLAAEETDEAHDLHKSNVLERPKVIYNDRTGK 263
Query: 240 YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299
YVMWMH+DD NYTKAAVGVA+SD PTGPFDYLYSKRPHGFDSRDMT+F+D+DGVAYL+YS
Sbjct: 264 YVMWMHVDDTNYTKAAVGVAMSDSPTGPFDYLYSKRPHGFDSRDMTLFRDEDGVAYLIYS 323
Query: 300 SEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEAL 359
SEDNSELHIGPL DYLDV++V+RRILVGQHREAPALFKH GTYYM+TSGCTGWAPNEAL
Sbjct: 324 SEDNSELHIGPLNQDYLDVTHVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEAL 383
Query: 360 VHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLR 419
HAAESIMGPWE MGNPCIGGNK+FRLTTFFAQST+V+PL G+ G +IFMADRWNPADLR
Sbjct: 384 AHAAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTFVVPLPGITGSFIFMADRWNPADLR 443
Query: 420 ESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRW 464
+SRY+WLPL V G AD PLEYNFGFPLWSRVSIYWH++WRLP W
Sbjct: 444 DSRYVWLPLTVGGAADHPLEYNFGFPLWSRVSIYWHRRWRLPYGW 488
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568607|ref|XP_002525277.1| beta-glucanase, putative [Ricinus communis] gi|223535435|gb|EEF37105.1| beta-glucanase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/466 (83%), Positives = 425/466 (91%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHN 60
MR+RNKY+K TTFPCNAG +CS+S +LW L GFLL LH SLV + G SGEI+ S +
Sbjct: 32 MRIRNKYRKSTTFPCNAGGRCSMSAVLWSLVGFLLFLHLCSLVGYNGGKSGEIQFRASRH 91
Query: 61 PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA 120
P REL EVEEENIQIPPPRG+RSPRAAKRRPKR TTLIDEFLDENSQLRHVFFP MK A
Sbjct: 92 PVIRELEEVEEENIQIPPPRGRRSPRAAKRRPKRPTTLIDEFLDENSQLRHVFFPGMKNA 151
Query: 121 IDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHK 180
IDP D GN+SFYY+PGRIWLDTEG PIQAHGGGILYDERS+TY+WYGEYKDGPTYHAHK
Sbjct: 152 IDPTNDAGNNSFYYHPGRIWLDTEGNPIQAHGGGILYDERSKTYYWYGEYKDGPTYHAHK 211
Query: 181 KAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 240
K AARVDIIGVGCYSSKD+WTWKNEGIVLAAE+ NETHDL+K NVLERPKVI+ND+TGKY
Sbjct: 212 KGAARVDIIGVGCYSSKDLWTWKNEGIVLAAEDMNETHDLHKSNVLERPKVIHNDKTGKY 271
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
VMWMHIDD NYTKAAVG+AISD PTGPFDY++SKRPHGF+SRDMTIFKDDDGVAYL+YSS
Sbjct: 272 VMWMHIDDVNYTKAAVGIAISDSPTGPFDYVHSKRPHGFESRDMTIFKDDDGVAYLIYSS 331
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
EDNSELHIGPLT +YLDV++V+RRIL+GQHREAPALFKH GTYYM+TSGCTGWAPNEAL
Sbjct: 332 EDNSELHIGPLTDNYLDVTHVMRRILIGQHREAPALFKHQGTYYMITSGCTGWAPNEALA 391
Query: 361 HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRE 420
HAAESIMGPWE MGNPCIGGNK+FRLTTFFAQST+VIPL GLPG +IFMADRWNPADLR+
Sbjct: 392 HAAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTFVIPLTGLPGSFIFMADRWNPADLRD 451
Query: 421 SRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWSG 466
SRY+WLPLIV G ADRPLE+NFGFP+WSRVSIYWH+KWRLPS W G
Sbjct: 452 SRYVWLPLIVGGRADRPLEFNFGFPVWSRVSIYWHRKWRLPSGWRG 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087306|emb|CBI33680.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/464 (78%), Positives = 399/464 (85%), Gaps = 34/464 (7%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHN 60
MRMRNKY+KPTTF CNAGS+CS H+
Sbjct: 1 MRMRNKYRKPTTFRCNAGSRCS----------------------------------FHHH 26
Query: 61 PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA 120
P REL +VEEENIQIPPP+GKRSPRAAKRRPKR TTLIDEFLDE+SQ+RH+FFPD KTA
Sbjct: 27 PLLRELEQVEEENIQIPPPKGKRSPRAAKRRPKRPTTLIDEFLDESSQIRHLFFPDQKTA 86
Query: 121 IDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHK 180
IDPM++ GNDSF YYPGRIWLDT+G PIQAHGGGILYD+RSR Y+WYGEYKDGPTYHAHK
Sbjct: 87 IDPMQEAGNDSFCYYPGRIWLDTDGNPIQAHGGGILYDKRSRMYYWYGEYKDGPTYHAHK 146
Query: 181 KAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 240
KAAARVDIIGVGCYSSKD+WTWK EGIVLAAEET+E HDL+K NVLERPKVIYNDRTGKY
Sbjct: 147 KAAARVDIIGVGCYSSKDLWTWKFEGIVLAAEETDEAHDLHKSNVLERPKVIYNDRTGKY 206
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
VMWMH+DD NYTKAAVGVA+SD PTGPFDYLYSKRPHGFDSRDMT+F+D+DGVAYL+YSS
Sbjct: 207 VMWMHVDDTNYTKAAVGVAMSDSPTGPFDYLYSKRPHGFDSRDMTLFRDEDGVAYLIYSS 266
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
EDNSELHIGPL DYLDV++V+RRILVGQHREAPALFKH GTYYM+TSGCTGWAPNEAL
Sbjct: 267 EDNSELHIGPLNQDYLDVTHVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALA 326
Query: 361 HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRE 420
HAAESIMGPWE MGNPCIGGNK+FRLTTFFAQST+V+PL G+ G +IFMADRWNPADLR+
Sbjct: 327 HAAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTFVVPLPGITGSFIFMADRWNPADLRD 386
Query: 421 SRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRW 464
SRY+WLPL V G AD PLEYNFGFPLWSRVSIYWH++WRLP W
Sbjct: 387 SRYVWLPLTVGGAADHPLEYNFGFPLWSRVSIYWHRRWRLPYGW 430
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525981|ref|XP_004169994.1| PREDICTED: uncharacterized LOC101203100 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/465 (77%), Positives = 406/465 (87%), Gaps = 2/465 (0%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHN 60
M+MRN+Y+K T C+AGS+C +S+++ L G +LLL+ +S +S D I L SH+
Sbjct: 13 MKMRNRYRKSTALRCDAGSRCLISVVIGSLMGCILLLNLYSAISPADEIGQGIHLRTSHH 72
Query: 61 PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA 120
F EL EVEEENIQIPPPR KRSPRA KRRPK+TTTLIDEFLDE+SQLRH FFPD K +
Sbjct: 73 LHFPELEEVEEENIQIPPPR-KRSPRATKRRPKKTTTLIDEFLDEDSQLRHKFFPDKKAS 131
Query: 121 IDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHK 180
IDPM GNDS +YYPGR+WLDTEG PIQAHGGG+L+DERS TY+WYGEYKDGPTYHAHK
Sbjct: 132 IDPMI-MGNDSMFYYPGRVWLDTEGNPIQAHGGGVLFDERSETYYWYGEYKDGPTYHAHK 190
Query: 181 KAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 240
K AARVDIIGVGCYSSKD+WTWKNEGIVL AEET+ETHDL+K NVLERPKVIYN RTGKY
Sbjct: 191 KGAARVDIIGVGCYSSKDLWTWKNEGIVLTAEETDETHDLHKSNVLERPKVIYNSRTGKY 250
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
VMWMHIDD NYTKA+VGVAISDYPTGPFDYLYSK+PHGFDSRDMTIFKDDDG AYL+YSS
Sbjct: 251 VMWMHIDDVNYTKASVGVAISDYPTGPFDYLYSKKPHGFDSRDMTIFKDDDGTAYLIYSS 310
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
EDNSELH+G L+ DYLDV+NV RR+L+GQHREAPALFKH GTYYMVTSGCTGWAPNEAL
Sbjct: 311 EDNSELHVGSLSKDYLDVTNVARRVLIGQHREAPALFKHQGTYYMVTSGCTGWAPNEALT 370
Query: 361 HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRE 420
HAAESIMGPWE MGNPCIGGNK+FRL TFF+QST+V+PL P L+IFMADRWNPADLR+
Sbjct: 371 HAAESIMGPWETMGNPCIGGNKMFRLATFFSQSTFVLPLPSYPNLFIFMADRWNPADLRD 430
Query: 421 SRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWS 465
SRY+WLPL+V G D PL+YNFGFPLWSRVSIYWH+KWRLP W+
Sbjct: 431 SRYVWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWRLPQGWN 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460584|ref|XP_004148025.1| PREDICTED: uncharacterized protein LOC101203100 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/465 (77%), Positives = 406/465 (87%), Gaps = 2/465 (0%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHN 60
M+MRN+Y+K T C+AGS+C +S+++ L G +LLL+ +S +S D I L SH+
Sbjct: 13 MKMRNRYRKSTALRCDAGSRCLISVVIGSLMGCILLLNLYSAISPADEIGQGIHLRTSHH 72
Query: 61 PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA 120
F EL EVEEENIQIPPPR KRSPRA KRRPK+TTTLIDEFLDE+SQLRH FFPD K +
Sbjct: 73 LHFPELEEVEEENIQIPPPR-KRSPRATKRRPKKTTTLIDEFLDEDSQLRHKFFPDKKAS 131
Query: 121 IDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHK 180
IDPM GNDS +YYPGR+WLDTEG PIQAHGGG+L+DERS TY+WYGEYKDGPTYHAHK
Sbjct: 132 IDPMI-TGNDSMFYYPGRVWLDTEGNPIQAHGGGVLFDERSETYYWYGEYKDGPTYHAHK 190
Query: 181 KAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 240
K AARVDIIGVGCYSSKD+WTWKNEGIVL AEET+ETHDL+K NVLERPKVIYN RTGKY
Sbjct: 191 KGAARVDIIGVGCYSSKDLWTWKNEGIVLTAEETDETHDLHKSNVLERPKVIYNSRTGKY 250
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
VMWMHID+ NYTKA+VGVAISDYPTGPFDYLYSK+PHGFDSRDMTIFKDDDG AYL+YSS
Sbjct: 251 VMWMHIDNVNYTKASVGVAISDYPTGPFDYLYSKKPHGFDSRDMTIFKDDDGTAYLIYSS 310
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
EDNSELH+G L+ DYLDV+NV RR+L+GQHREAPALFKH GTYYMVTSGCTGWAPNEAL
Sbjct: 311 EDNSELHVGSLSKDYLDVTNVARRVLIGQHREAPALFKHQGTYYMVTSGCTGWAPNEALT 370
Query: 361 HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRE 420
HAAESIMGPWE MGNPCIGGNK+FRL TFF+QST+V+PL P L+IFMADRWNPADLR+
Sbjct: 371 HAAESIMGPWETMGNPCIGGNKMFRLATFFSQSTFVLPLPSYPNLFIFMADRWNPADLRD 430
Query: 421 SRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWS 465
SRY+WLPL+V G D PL+YNFGFPLWSRVSIYWH+KWRLP W+
Sbjct: 431 SRYVWLPLMVGGLVDEPLDYNFGFPLWSRVSIYWHRKWRLPQGWN 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496991|ref|XP_003517348.1| PREDICTED: uncharacterized protein LOC100775557 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/449 (78%), Positives = 403/449 (89%)
Query: 18 GSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIP 77
GS+CS S+++ L G L LLHF++L+ H+D E L IS++P FREL EVEEE++QIP
Sbjct: 15 GSRCSTSVVVLSLLGCLYLLHFYTLIHHRDRNGEESLLRISNHPQFRELQEVEEEDVQIP 74
Query: 78 PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137
PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFP K AIDPM+ N+S+YYYPG
Sbjct: 75 PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPGKKIAIDPMQTAVNESYYYYPG 134
Query: 138 RIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSK 197
RIWLDT+G PIQAHGGGI+YD+RSRTY+WYGEYKDGPTY HKK AARVDIIGVGCYSSK
Sbjct: 135 RIWLDTDGNPIQAHGGGIIYDKRSRTYYWYGEYKDGPTYQIHKKGAARVDIIGVGCYSSK 194
Query: 198 DMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVG 257
D+WTWK++GIVLAAEET+ETHDL+ NVLERPKVIYN+RTGKYVMWMHIDD NYTKAAVG
Sbjct: 195 DLWTWKHKGIVLAAEETDETHDLHMSNVLERPKVIYNERTGKYVMWMHIDDANYTKAAVG 254
Query: 258 VAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLD 317
VA+SD P GPFDYL S+RPHG++SRDMT+FKDDDGVAYL+YSSEDNSELH+GPLT DYL+
Sbjct: 255 VAVSDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYLIYSSEDNSELHMGPLTEDYLN 314
Query: 318 VSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPC 377
V++V+RRILVGQHREAPALFK+ GTYYM+TS CTGW PNEAL HAAESI+GPWE +GNPC
Sbjct: 315 VTSVMRRILVGQHREAPALFKYQGTYYMITSACTGWVPNEALAHAAESILGPWETVGNPC 374
Query: 378 IGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRP 437
IGGNK+FRLTTFFAQST+V+PL G PG +IFMADRWNPADL++SRY+WLPLIV GP D+P
Sbjct: 375 IGGNKMFRLTTFFAQSTFVLPLPGFPGSFIFMADRWNPADLKDSRYVWLPLIVAGPVDQP 434
Query: 438 LEYNFGFPLWSRVSIYWHKKWRLPSRWSG 466
LEY+F FPLWSRVSIYWH+KWRLP W+G
Sbjct: 435 LEYSFEFPLWSRVSIYWHRKWRLPHGWNG 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541615|ref|XP_003539269.1| PREDICTED: uncharacterized protein LOC100782607 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/449 (78%), Positives = 403/449 (89%)
Query: 18 GSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIP 77
GS+CS +++ L G L LLH ++L+ H+D GE L IS++P F EL EVEEE++QIP
Sbjct: 15 GSRCSTYVVILSLLGCLFLLHLYTLIRHRDRNGGESLLRISNHPQFHELQEVEEEDVQIP 74
Query: 78 PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137
PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFP K AIDPM+ N+S+YYYPG
Sbjct: 75 PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPGKKIAIDPMQTAVNESYYYYPG 134
Query: 138 RIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSK 197
RIWLDT+G PIQAHGGGI+YD+RSRTY+WYGEYKDGPTY HKK AARVDIIGVGCYSSK
Sbjct: 135 RIWLDTDGNPIQAHGGGIIYDKRSRTYYWYGEYKDGPTYQIHKKGAARVDIIGVGCYSSK 194
Query: 198 DMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVG 257
D+WTWK+EGIVLAAEET+ETHDL+ NVLERPKVIYN+R+GK+VMWMHIDD NYTKAAVG
Sbjct: 195 DLWTWKHEGIVLAAEETDETHDLHTSNVLERPKVIYNERSGKFVMWMHIDDANYTKAAVG 254
Query: 258 VAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLD 317
VAISD P GPFDYL S+RPHG++SRDMT+FKDDDGVAY++YSSEDNSELHIGPLT DYL+
Sbjct: 255 VAISDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYIIYSSEDNSELHIGPLTEDYLN 314
Query: 318 VSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPC 377
V++V+RRILVGQHREAPALFKH GTYYM+TSGCTGWAPNEAL HAAESI+GPWE +GNPC
Sbjct: 315 VTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHAAESILGPWETVGNPC 374
Query: 378 IGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRP 437
IGGNK+FRLTTFFAQST+V+PL G PG +IFMADRWNPA+LR+SRY+WLPLIV GP D+P
Sbjct: 375 IGGNKMFRLTTFFAQSTFVVPLPGFPGSFIFMADRWNPANLRDSRYVWLPLIVAGPVDQP 434
Query: 438 LEYNFGFPLWSRVSIYWHKKWRLPSRWSG 466
LEY+F FPLWSRVSIYWH+KWRLP W+G
Sbjct: 435 LEYSFEFPLWSRVSIYWHRKWRLPQGWNG 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357482577|ref|XP_003611575.1| hypothetical protein MTR_5g015460 [Medicago truncatula] gi|355512910|gb|AES94533.1| hypothetical protein MTR_5g015460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/467 (76%), Positives = 409/467 (87%), Gaps = 2/467 (0%)
Query: 1 MRMRNKYKKPTTFPCNAGSKCSVSI-ILWILAGFLLLLHFFSLVSHKD-GTSGEIELHIS 58
MR+RNK KKPT+ C+AG +CS S+ +L +L LL +S V H D GE L +S
Sbjct: 1 MRIRNKCKKPTSLRCDAGGRCSTSVFVLSLLGCLLLFQLLYSYVHHVDRHGGGEPRLLVS 60
Query: 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMK 118
++P FREL EVEEE++ +PPP+GKRSPRA KRRPKRTTTLIDEFLDENSQ+RHVFFP K
Sbjct: 61 NHPQFRELQEVEEESLHVPPPKGKRSPRAVKRRPKRTTTLIDEFLDENSQMRHVFFPGRK 120
Query: 119 TAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHA 178
AIDP+ ND ++YYPGR+WLDT+G PIQAHGGGILYD+ SRTY+WYGEYKDG TYHA
Sbjct: 121 RAIDPILAVENDKYHYYPGRMWLDTDGHPIQAHGGGILYDKSSRTYYWYGEYKDGITYHA 180
Query: 179 HKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG 238
HKK AARVDIIGVGCYSSKD+WTWK+EGIVLAAEET+ETHDL+K NVLERPKVIYN++T
Sbjct: 181 HKKGAARVDIIGVGCYSSKDLWTWKHEGIVLAAEETDETHDLHKSNVLERPKVIYNEKTE 240
Query: 239 KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVY 298
KYVMWMHIDD NYTKA+VGVAISD P GPF+YL S RPHGF+SRDMT+FKDDDGVAY+VY
Sbjct: 241 KYVMWMHIDDANYTKASVGVAISDAPDGPFNYLGSHRPHGFESRDMTVFKDDDGVAYIVY 300
Query: 299 SSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEA 358
SSEDNSELHIGPLT DYL+V++V+RRILVGQHREAPALFKH GTYYM+TSGCTGWAPNEA
Sbjct: 301 SSEDNSELHIGPLTQDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEA 360
Query: 359 LVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL 418
L HAAESIMGPWE MGNPC+GGNK+FRLTTFFAQST+V+P++G PG +IFMADRWNPADL
Sbjct: 361 LAHAAESIMGPWETMGNPCLGGNKMFRLTTFFAQSTFVLPISGFPGAFIFMADRWNPADL 420
Query: 419 RESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWS 465
R+SRY+WLPLIV GPAD PLEY+FGFP WSRVSIYWH+KWRLP W+
Sbjct: 421 RDSRYVWLPLIVAGPADEPLEYSFGFPWWSRVSIYWHRKWRLPQGWN 467
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816238|ref|XP_002876002.1| glycosyl hydrolase family protein 43 [Arabidopsis lyrata subsp. lyrata] gi|297321840|gb|EFH52261.1| glycosyl hydrolase family protein 43 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/461 (72%), Positives = 388/461 (84%), Gaps = 7/461 (1%)
Query: 3 MRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHI-SHNP 61
M+NK+ K TF +CS ++ + G + ++HF L S + ++ + H+P
Sbjct: 4 MKNKHNKKATF-----LRCSPFGLVSTVVGCVFMIHFTMLYSRRYSVDLDVSPQLLIHHP 58
Query: 62 SFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAI 121
REL EEENI +PPPR KRSPRA KR+PK TTL++EFLDENSQ+RH+FFPDMK+A
Sbjct: 59 IVRELEHAEEENIHMPPPR-KRSPRAIKRKPKIPTTLVEEFLDENSQIRHLFFPDMKSAF 117
Query: 122 DPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKK 181
P K N + S YY+PGRIW DTEG PIQAHGGGIL+DE S+ Y+WYGEYKDGPTY +HKK
Sbjct: 118 GPTKGNNDTSHYYFPGRIWTDTEGNPIQAHGGGILFDEISKVYYWYGEYKDGPTYLSHKK 177
Query: 182 AAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYV 241
AARVDIIGVGCYSSKD+WTWKNEG+VLAAEET+ETHDL+K NVLERPKVIYN TGKYV
Sbjct: 178 GAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSVTGKYV 237
Query: 242 MWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301
MWMHIDD NYTKA+VGVAISD PTGPFDYLYS+ PHGFDSRDMT++KDDD +AYL+YSSE
Sbjct: 238 MWMHIDDANYTKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNIAYLIYSSE 297
Query: 302 DNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH 361
DNS LHIGPLT +YLDV V++RI+VGQHREAPA+FKH TYYM+TSGCTGWAPNEAL H
Sbjct: 298 DNSVLHIGPLTENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALAH 357
Query: 362 AAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRES 421
AAESIMGPWE +GNPC+GGN +FR TTFFAQST+VIPL G+PG+YIF+ADRWNPADLR+S
Sbjct: 358 AAESIMGPWETLGNPCVGGNNIFRSTTFFAQSTFVIPLPGVPGVYIFLADRWNPADLRDS 417
Query: 422 RYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPS 462
RY+WLPLIV GPADRPLEYNFGFP+WSRVS+YWH++WRLPS
Sbjct: 418 RYLWLPLIVGGPADRPLEYNFGFPMWSRVSVYWHRQWRLPS 458
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806330|ref|NP_001241482.1| uncharacterized protein LOC100813539 [Glycine max] gi|255638374|gb|ACU19498.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/449 (74%), Positives = 388/449 (86%), Gaps = 2/449 (0%)
Query: 18 GSKC-SVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQI 76
GS+C S S ++W L G LLL H +S V HK G E++L ++++P EL +VE E IQ+
Sbjct: 15 GSRCYSTSAVIWSLLGCLLLFHLYSNVHHKHGEGREVQLRVTNHPQLHELQQVEGEIIQL 74
Query: 77 PPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYP 136
PP +GKRSPRAAKRR KR T L+DEFLDE+S+LRHVFFP K+AI PM+ GNDS+YYYP
Sbjct: 75 PP-KGKRSPRAAKRRHKRVTPLVDEFLDEDSRLRHVFFPGNKSAIHPMRVTGNDSYYYYP 133
Query: 137 GRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS 196
GRIWLDT+G PIQAHGGGILYDERS TY+WYGEYKDGPTYHAHK+A+ARVDIIGVGCYSS
Sbjct: 134 GRIWLDTDGNPIQAHGGGILYDERSHTYYWYGEYKDGPTYHAHKRASARVDIIGVGCYSS 193
Query: 197 KDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAV 256
KD+W+WKNEGIVLAAEE+N THDLYK NVLERPKVIYN++ KYVMWMHIDD NYTKA+V
Sbjct: 194 KDLWSWKNEGIVLAAEESNVTHDLYKTNVLERPKVIYNEKIRKYVMWMHIDDANYTKASV 253
Query: 257 GVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYL 316
G AISD P GPF+YL S+RPHG++SRDMT+FKD+DGVAYL+YSSE+N+ LHIGPLT DYL
Sbjct: 254 GTAISDTPDGPFEYLGSQRPHGYESRDMTVFKDEDGVAYLIYSSEENNVLHIGPLTEDYL 313
Query: 317 DVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNP 376
+V V+RR+ VGQ REAPA+FKH GTYYM+TSGCTGWAPNEALVHAAESI+GPWE MGNP
Sbjct: 314 NVIPVMRRLFVGQRREAPAVFKHQGTYYMITSGCTGWAPNEALVHAAESILGPWETMGNP 373
Query: 377 CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADR 436
C+GGNK+FR+ TF AQST+V+PL G PG +IFMADRWNPA+LR+SRY+WLPLIV GPAD
Sbjct: 374 CVGGNKMFRIATFLAQSTFVLPLPGFPGSFIFMADRWNPANLRDSRYVWLPLIVEGPADH 433
Query: 437 PLEYNFGFPLWSRVSIYWHKKWRLPSRWS 465
LEY+ G PLWSRVSIYWH+KWRLP WS
Sbjct: 434 ALEYSSGLPLWSRVSIYWHRKWRLPQGWS 462
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| TAIR|locus:2097370 | 466 | AT3G49880 [Arabidopsis thalian | 0.864 | 0.864 | 0.755 | 1.3e-178 | |
| TAIR|locus:2158646 | 471 | AT5G67540 [Arabidopsis thalian | 0.984 | 0.974 | 0.668 | 5.1e-177 | |
| UNIPROTKB|G4NHG9 | 458 | MGG_03844 "Glycosyl hydrolase | 0.598 | 0.609 | 0.415 | 3.5e-52 | |
| ASPGD|ASPL0000037341 | 488 | AN2664 [Emericella nidulans (t | 0.592 | 0.565 | 0.316 | 8.3e-35 | |
| UNIPROTKB|G4MZC8 | 487 | MGG_11400 "Endo-1,4-beta-xylan | 0.409 | 0.392 | 0.281 | 1.1e-08 | |
| UNIPROTKB|G4NAP1 | 456 | MGG_08496 "Endo-1,4-beta-xylan | 0.364 | 0.372 | 0.292 | 0.00043 | |
| ASPGD|ASPL0000064441 | 383 | AN10919 [Emericella nidulans ( | 0.351 | 0.428 | 0.273 | 0.00069 |
| TAIR|locus:2097370 AT3G49880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
Identities = 306/405 (75%), Positives = 350/405 (86%)
Query: 59 HNPSFRELVEVEEENIQIXXXXXXXXXXXXXXXXXXTTTLIDEFLDENSQLRHVFFPDMK 118
H+P REL VEEENI + TTL++EFLDENSQ+RH+FFPDMK
Sbjct: 56 HHPIVRELERVEEENIHMPPPRKRSPRAIKRKPKT-PTTLVEEFLDENSQIRHLFFPDMK 114
Query: 119 TAIDPMKDNGND-SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYH 177
+A P K++ ND S YY+PGRIW DTEG PIQAHGGGIL+D+ S+ Y+WYGEYKDGPTY
Sbjct: 115 SAFGPTKEDTNDTSHYYFPGRIWTDTEGNPIQAHGGGILFDDISKVYYWYGEYKDGPTYL 174
Query: 178 AHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT 237
+HKK AARVDIIGVGCYSSKD+WTWKNEG+VLAAEET+ETHDL+K NVLERPKVIYN T
Sbjct: 175 SHKKGAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSDT 234
Query: 238 GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 297
GKYVMWMHIDD NYTKA+VGVAISD PTGPFDYLYS+ PHGFDSRDMT++KDDD VAYL+
Sbjct: 235 GKYVMWMHIDDANYTKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNVAYLI 294
Query: 298 YSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNE 357
YSSEDNS LHIGPLT +YLDV V++RI+VGQHREAPA+FKH TYYM+TSGCTGWAPNE
Sbjct: 295 YSSEDNSVLHIGPLTENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNE 354
Query: 358 ALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPAD 417
AL HAAESIMGPWE +GNPC+GGN +FR TTFFAQST+VIPL G+PG++IFMADRWNPAD
Sbjct: 355 ALAHAAESIMGPWETLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPGVFIFMADRWNPAD 414
Query: 418 LRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPS 462
LR+SRY+WLPLIV GPADRPLEY+FGFP+WSRVS+YWH++WRLPS
Sbjct: 415 LRDSRYLWLPLIVGGPADRPLEYSFGFPMWSRVSVYWHRQWRLPS 459
|
|
| TAIR|locus:2158646 AT5G67540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1719 (610.2 bits), Expect = 5.1e-177, P = 5.1e-177
Identities = 316/473 (66%), Positives = 368/473 (77%)
Query: 1 MRMRNKY-KKPTTFPCNAGSKCSVSXXXX--XXXXXXXXXXXXXXVSHKDG------TSG 51
M+ NKY KK T+ CN C S S KD +S
Sbjct: 1 MKKNNKYNKKSTSLHCNDAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSD 60
Query: 52 EIEL--HISHNPSFRELVEVEEENIQIXXXXXXXXXXXXXXXXXXTTTLIDEFLDENSQL 109
++++ H++H P REL+ VEEE +++ L++EFLD+ S +
Sbjct: 61 QLQVVHHLAH-PIVRELIRVEEEVLRMPPPRKRSPRTSKRRSRK-PIPLVEEFLDDKSPI 118
Query: 110 RHVFFPDMKTA-IDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYG 168
RH+FFP +KTA P KD GN++ YY+PG+IW+DT+G PIQAHGGGIL D +S TY+WYG
Sbjct: 119 RHLFFPGIKTAAFGPTKDMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYG 178
Query: 169 EYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER 228
EYKDGPTYHAHKK ARVDIIGVGCYSSKD+WTWKNEGIVL AEETN+THDL+K NVLER
Sbjct: 179 EYKDGPTYHAHKKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLER 238
Query: 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFK 288
PKVIYN++T KYVMWMHIDD NYTKA+VGVAIS+ PTGPF+YLYSKRPHGFDSRDMT+FK
Sbjct: 239 PKVIYNEKTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFK 298
Query: 289 DDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTS 348
DDDGVAYL+YSSE NS LHIGPLT DYLDV+ V++R++VGQHREAPA+FKH YYMVTS
Sbjct: 299 DDDGVAYLIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTS 358
Query: 349 GCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIF 408
CTGWAPNEAL HAAESIMGPWE +GNPCIGGNKVFRLTTFFAQSTYVIPL G+PG +IF
Sbjct: 359 WCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIF 418
Query: 409 MADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLP 461
MADRWNPADLR+SRY+WLPL++ GPAD+PLE+NFGFP WSRVSIYWH KWRLP
Sbjct: 419 MADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 471
|
|
| UNIPROTKB|G4NHG9 MGG_03844 "Glycosyl hydrolase family 43 protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 126/303 (41%), Positives = 162/303 (53%)
Query: 131 SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYK-DGPTYHAHKKAAARVDII 189
S PG W G IQAHG GI + TYF GE K +G +
Sbjct: 21 SLQIVPGGTWTADNGQHIQAHGTGITVV--NGTYFMIGEDKTNGSAFQ------------ 66
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC 249
V CYSS D+ W EG +L+ T E DL ++ERPKVI+N+RT KYV+WMHID
Sbjct: 67 NVNCYSSTDLVRWHYEGSLLS--RTAEAGDLGPNRIVERPKVIFNERTQKYVLWMHIDSS 124
Query: 250 NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 309
+Y A GVA+ D G F YL S RP GF SRD +FKDDDG AYL+ ++ L I
Sbjct: 125 DYKDARAGVAVGDSVCGKFTYLGSSRPLGFQSRDSGLFKDDDGTAYLLTEDREHG-LRIN 183
Query: 310 PLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGP 369
LT DYL ++ L + E+PA+ K GTYYM S TGW PN+ + A SI GP
Sbjct: 184 RLTDDYLGFADNTSTYLWSESIESPAMLKRNGTYYMFGSKLTGWDPNDNVYSTATSISGP 243
Query: 370 WEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLI 429
W G+ T+ +Q+TY++P G G +++ DRW +L+ S YIWLPL
Sbjct: 244 WSGWQTFADKGSN-----TYASQTTYILPY-GDGGNVMYLGDRWVSTNLQSSTYIWLPLD 297
Query: 430 VRG 432
+ G
Sbjct: 298 ISG 300
|
|
| ASPGD|ASPL0000037341 AN2664 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 97/306 (31%), Positives = 157/306 (51%)
Query: 133 YYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVG 192
Y PG W DTEG + AH G + +D+ S ++ +GEYK ++ GV
Sbjct: 20 YIVPGGRWQDTEGNLVNAHAGCVYFDKESSKFWLFGEYKT----EGQEEGG------GVS 69
Query: 193 CYSSKDMWTWKNEGIVLAAEETNETHD-LYKLNVLERPKVIYNDRTGKY----VMWMHID 247
YSS D+ TW++ G+ L E E H + ++++RPKV+Y++ G+Y ++W H D
Sbjct: 70 VYSSDDLATWEHHGLAL---EPIEGHPYISPEHIIQRPKVVYSEEAGQYHVEQMLW-HAD 125
Query: 248 DCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYS---SEDN 303
+ Y G+A +D GP++++ + P G S+D +F D DG +Y +YS S D
Sbjct: 126 NSTYGWLLQGLAAADTVAGPYEFVSATSPLGNWSQDFGLFTDRTDGRSYALYSNGDSVDG 185
Query: 304 SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAA 363
++++ ++ + VV R EAP + + +Y+ + S TG+ PN + A
Sbjct: 186 RDVYLTRYNTNITALEEVVYRF-PKYDLEAPTIIQTDHSYWALMSHKTGYRPNNVVAFRA 244
Query: 364 ESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGL-YIFMADRWNPADLRESR 422
+ + GPW P I R TF +QS + I + G Y+++ D+W+ L ESR
Sbjct: 245 DELSGPWSQ---PFIVAPLNTR--TFNSQSGFTIRIDGTKQTTYLYLGDQWDSNSLWESR 299
Query: 423 YIWLPL 428
YIWLPL
Sbjct: 300 YIWLPL 305
|
|
| UNIPROTKB|G4MZC8 MGG_11400 "Endo-1,4-beta-xylanase D" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 62/220 (28%), Positives = 91/220 (41%)
Query: 165 FWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLN 224
F+ GEY PT + +D +SS D+ W +L E H
Sbjct: 31 FYRGEYWVYPTSSYPYEQQTYLD-----AFSSPDLVNWTKHPRILTNENVTWAH-----K 80
Query: 225 VLERPKVIYNDRTGKYVMWMHIDDC--NYTKAAVGVAISDYPTGPF-DYL----YSKRPH 277
+ P I R GKY ++ +D N +GV ++D P GP+ D L K +
Sbjct: 81 AMWAPSPI--SRNGKYYLYFGANDIQTNDELGGIGVGVADRPGGPYVDALGRPLIDKFHN 138
Query: 278 GFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYL-----DVSNVVRRILVGQHRE 332
G D +F DDDG AY+ Y S ++ L D + D + I Q+ E
Sbjct: 139 GAQPIDQNVFIDDDGQAYIYYGGW--SHCNVAKLNEDMISLGTFDDGTTYKEITPDQYVE 196
Query: 333 APALFKHLGTYYMVTSGCTGWA-PNEALVHA-AESIMGPW 370
+ K G YY S GW P+ A+ +A A+S +GP+
Sbjct: 197 GALMMKRNGRYYFFWSE-GGWTGPDYAVSYAIADSPLGPF 235
|
|
| UNIPROTKB|G4NAP1 MGG_08496 "Endo-1,4-beta-xylanase D" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 58/198 (29%), Positives = 88/198 (44%)
Query: 194 YSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTK 253
YS+ DM W++ G T + + P I +R GK+ +++ + +
Sbjct: 65 YSTDDMANWQDHGSPAGLR----TFAWARQDAWA-PGAI--ERDGKFFLYVPVTPSSGGG 117
Query: 254 AAVGVAISDYPTGPF-DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED------NSEL 306
A+GVA++D GP+ D L H + D T+F DDD AYL + + + N ++
Sbjct: 118 MAIGVAVADDIAGPYTDPLGGPLVHNGEF-DPTVFIDDDEQAYLYWGNPNLWYVKLNRDM 176
Query: 307 --HIG-PLTSDYLDVSNVVRRILV---GQ---HREAPALFKHLGTYYMVTSGCTGWAPNE 357
G P+ + RR V G+ + E P L KH GTYYM T G +E
Sbjct: 177 ISFSGAPVQVELTPAGFGARRPDVPKEGRPTSYEEGPWLHKHNGTYYM-TYGAN--CCDE 233
Query: 358 ALVHA-AESIMGPWEDMG 374
+ +A A S GPW G
Sbjct: 234 DIHYATAPSATGPWTHGG 251
|
|
| ASPGD|ASPL0000064441 AN10919 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 0.00069, P = 0.00069
Identities = 50/183 (27%), Positives = 77/183 (42%)
Query: 194 YSSKDMWTWKNEGIVLAAEETN-ETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT 252
+SS DM W++ G + + +D + V+ R +D K+ + +
Sbjct: 70 FSSADMVNWQHHGSPMDLTTFSWADNDAWAGQVVAR-----DD---KFYFYAPVHHSTTG 121
Query: 253 KAAVGVAISDYPTGPF-DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPL 311
A+GV ISD TGP+ D L + D T++ DDDG AYL + N L L
Sbjct: 122 AMAIGVGISDSITGPYTDALGHPLVENGEI-DPTVYIDDDGQAYLYWG---NPGLWYVEL 177
Query: 312 TSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
D + S + ++ + E P L+K YYM+ + T + N S GPW
Sbjct: 178 NEDMISYSGNISQV---ELTEGPWLYKREDIYYMIYAA-TCCSEN-IRYSTGSSPTGPWT 232
Query: 372 DMG 374
G
Sbjct: 233 YRG 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 466 430 0.00086 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 628 (67 KB)
Total size of DFA: 328 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.07u 0.07s 32.14t Elapsed: 00:00:02
Total cpu time: 32.07u 0.07s 32.14t Elapsed: 00:00:02
Start: Fri May 10 03:40:16 2013 End: Fri May 10 03:40:18 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| cd08985 | 265 | cd08985, GH43_6, Glycosyl hydrolase family 43 | 1e-128 | |
| cd08978 | 271 | cd08978, GH_F, Glycosyl hydrolase families 43 and | 1e-48 | |
| cd09004 | 275 | cd09004, GH43_bXyl, Glycosyl hydrolase family 43, | 3e-19 | |
| cd08990 | 274 | cd08990, GH43_AXH_like, Glycosyl hydrolase family | 8e-19 | |
| cd08999 | 287 | cd08999, GH43_ABN_2, Glycosyl hydrolase family 43 | 7e-16 | |
| cd08991 | 294 | cd08991, GH43_bXyl_2, Glycosyl hydrolase family 43 | 2e-14 | |
| pfam04616 | 284 | pfam04616, Glyco_hydro_43, Glycosyl hydrolases fam | 1e-13 | |
| cd08772 | 286 | cd08772, GH43_62_32_68, Glycosyl hydrolase familie | 1e-11 | |
| cd08986 | 269 | cd08986, GH43_7, Glycosyl hydrolase family 43 | 5e-07 | |
| cd09001 | 269 | cd09001, GH43_XYL_2, Glycosyl hydrolase family 43, | 7e-07 | |
| cd08981 | 291 | cd08981, GH43_2, Glycosyl hydrolase family 43 | 8e-07 | |
| cd09003 | 311 | cd09003, GH43_AXH_1, Glycosyl hydrolase family 43 | 2e-06 | |
| COG3507 | 549 | COG3507, XynB, Beta-xylosidase [Carbohydrate trans | 3e-06 | |
| cd08998 | 288 | cd08998, GH43_ABN_1, Glycosyl hydrolase family 43 | 5e-06 | |
| cd09000 | 288 | cd09000, GH43_XYL_1, Glycosyl hydrolase family 43, | 4e-04 | |
| cd08979 | 276 | cd08979, GH_J, Glycosyl hydrolase families 32 and | 5e-04 |
| >gnl|CDD|185726 cd08985, GH43_6, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 372 bits (958), Expect = e-128
Identities = 151/282 (53%), Positives = 186/282 (65%), Gaps = 20/282 (7%)
Query: 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207
IQAHGGGIL TY+WYGE K G GV CYSS D+ W EG+
Sbjct: 1 IQAHGGGILKVGG--TYYWYGENKGG----------GDTAFGGVSCYSSTDLVNWTFEGL 48
Query: 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP 267
L EE ++ DL ++ERPKVIYN +TGKYVMWMHID +Y+ A VGVA SD PTGP
Sbjct: 49 ALTPEE--DSADLGPGRIIERPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGP 106
Query: 268 FDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV 327
+ YL S RP G+ SRD +F DDDG AYL+YS DNS+L+I LT DYL V+ V + V
Sbjct: 107 YTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLYIYRLTDDYLSVTGEVTTVFV 166
Query: 328 GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT 387
G REAPA+FK G YY++TSG TGW PN+A A SI+GPW D+GNP GG+ T
Sbjct: 167 GAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGGS-----T 221
Query: 388 TFFAQSTYVIPLAGL-PGLYIFMADRWNPADLRESRYIWLPL 428
T+ +Q+T+V+P+ G YI+M DRWNP+DL +SRY+WLPL
Sbjct: 222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPL 263
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 265 |
| >gnl|CDD|185719 cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-48
Identities = 73/277 (26%), Positives = 104/277 (37%), Gaps = 29/277 (10%)
Query: 163 TYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222
Y+ YG D GV +SSKD+ W+ EG V A +
Sbjct: 11 KYYLYGSTDDAA-------------GPGVQVWSSKDLVNWRYEGAVFVA--WRGRGEAKD 55
Query: 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL--YSKRPHGFD 280
L P+VIY + GKY ++ + D +Y + +GVA S+ PTGPF+ + +
Sbjct: 56 SGGLWAPEVIYYE--GKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGN 113
Query: 281 SRDMTIFKDDDGVAYLVYSSEDN----SELHIGPLTSDYLDV----SNVVRRILVGQHRE 332
S D T+FKDDDG YL Y S D ++I LT D E
Sbjct: 114 SIDPTVFKDDDGKYYLYYGSGDPGAGFGGIYISELTDDLTKPTGPPVLSASSGNNNAVTE 173
Query: 333 APALFKHLGTYYMVTS-GCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFA 391
P +FK G YY+ S TG ++SI GP+ G +
Sbjct: 174 GPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVGL 233
Query: 392 QSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPL 428
V+ ++ A N D + + PL
Sbjct: 234 GHGSVVRDKNGEWYLVYHAYNANS-DNPNRKLVINPL 269
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. GH62 are also predicted to be inverting enzymes. A common structural feature of both, GH43 and GH62 enzymes, is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 271 |
| >gnl|CDD|185745 cd09004, GH43_bXyl, Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 192 GCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNV-LERPKVIYNDRTGKYVMWMHIDDCN 250
+SSKD+ W EGI+L + D+ N P VI + GKY +
Sbjct: 37 DVFSSKDLVNWTKEGIIL------DMADVSWANRAAWAPSVIERN--GKYYFY------- 81
Query: 251 YTKAA-VGVAISDYPTGPF-DYLY----SKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNS 304
++ +GVA++D P GPF D L K G D +F DDDG AYL +
Sbjct: 82 FSANGGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGG--WG 139
Query: 305 ELHIGPLTSDYLDVSNVVRRILV--GQHREAPALFKHLGTYYMVTS--GCTGWAPNEALV 360
++ L D + + + E P +FK G YY++ S G T P+ +
Sbjct: 140 HCNVAKLNEDMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGGWTD--PDYHVA 197
Query: 361 HA-AESIMGPWEDMGN 375
+A A+S +GP+E GN
Sbjct: 198 YAMADSPLGPFERPGN 213
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 275 |
| >gnl|CDD|185731 cd08990, GH43_AXH_like, Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 8e-19
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 31/198 (15%)
Query: 193 CYSSKDMWTWKNEGIVLAAEETN--ETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN 250
+SS D+ W + G++L+ + + P V+ + GKY ++ D +
Sbjct: 35 VFSSPDLVNWTDHGVILSVTDFPAWAKGQAWA------PDVVE--KNGKYYLYFPARDKD 86
Query: 251 YTKAAVGVAISDYPTGPF-DYLYSK----RPHGFDSRDMTIFKDDDGVAYLVYSSEDNSE 305
A +GVA+SD P GPF D G+ S D +F DDDG AYL +
Sbjct: 87 GGFA-IGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGGLG-- 143
Query: 306 LHIGPLTSDYLDVSNVVRRILVGQH--------REAPALFKHLGTYYMVTSGCTGWAPNE 357
L + L D L + I++ EAP + K GTYY+ S TG E
Sbjct: 144 LRVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYS--TGD--PE 199
Query: 358 ALVHA-AESIMGPWEDMG 374
+ +A ++S +GP+ G
Sbjct: 200 EIAYATSDSPLGPFTYRG 217
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 274 |
| >gnl|CDD|185740 cd08999, GH43_ABN_2, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 7e-16
Identities = 54/209 (25%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 193 CYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT 252
+S D+ W G T + P V Y + GKYV++ Y+
Sbjct: 34 IATSTDLVNWTYLGDAFPKLPRWWTGGDF-----WAPDVSYVN--GKYVLY-------YS 79
Query: 253 -------KAAVGVAISDYPTGPF----DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301
+GVA +D P GPF + D + F D DG YLV+ S+
Sbjct: 80 ARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSD 139
Query: 302 DNS-----ELHIGPLTSDYLDVS------NVVRRILVGQHREAPALFKHLGTYYMVTS-- 348
NS +++ L++D L ++ G EAP L K G YY+ S
Sbjct: 140 GNSIGKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAG 199
Query: 349 GCTGWAPNEALVHA-AESIMGPWEDMGNP 376
GC A A+ A ++S++GP+ P
Sbjct: 200 GCCSGASTYAVGVARSKSLLGPYVKAPGP 228
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 287 |
| >gnl|CDD|185732 cd08991, GH43_bXyl_2, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 60/221 (27%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 190 GVGCYSSKDMWTWKNEGIVL-AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD 248
G YSS D+ WK G L A ++ + P+V Y + GK+ M+ +D
Sbjct: 24 GFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWA------PEVYYYN--GKFYMYYSAND 75
Query: 249 CNYTKAAVGVAISDYPTGPFDYLYSKRPH-GFDSRDMTIFKDDDGVAYLVYSSED----N 303
+ +GVA+SD P GPF + S D F DDDG YL YS +
Sbjct: 76 RDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGNRV 135
Query: 304 SELHIGPLTSDYLDV---------SNVVRRILVGQHR------------EAPALFKHLGT 342
S+++ L D L + I R E P + KH G
Sbjct: 136 SDIYGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGR 195
Query: 343 YYMVTSGCTGWAPNEALVHA-AESIMGPWEDM-GNPCIGGN 381
YY+ S + + +A A+S +GPW NP + N
Sbjct: 196 YYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPILRRN 236
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 294 |
| >gnl|CDD|218178 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43 | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC 249
G+ + SKD+ W+ G VL + D P + Y+D GK+ +++
Sbjct: 34 GIPIFHSKDLVNWRLVGHVL---DRRSQLDGRGNPNSWAPDISYHD--GKF--YLYYTAV 86
Query: 250 NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED----NSE 305
T VA +D P GP+ + G D ++F DDDG YLV+ D +
Sbjct: 87 KVTHG-NFVATADSPDGPWSDPGKLKSGGG-GIDPSLFHDDDGKKYLVWGGWDPRHGHGG 144
Query: 306 LHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCTGWAPNEA 358
+++ L++D + +++ G+ E P L+K G YY+ + G A
Sbjct: 145 IYLQELSNDGTKLVGPPTKLIYPGTRWVGGKVTEGPHLYKRNGYYYLTYA-EGGTGGPYA 203
Query: 359 LVHA-AESIMGPWED 372
+ A ++S++GP+E
Sbjct: 204 VGVARSKSLLGPYEW 218
|
The glycosyl hydrolase family 43 contains members that are arabinanase. Rabinanases hydrolyses the alpha-1,5-linked L-arabinofuranoside backbone of plant cell wall arabinans. The structure of arabinanase Arb43A from Cellvibrio japonicus reveals a five-bladed beta-propeller fold. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 284 |
| >gnl|CDD|185718 cd08772, GH43_62_32_68, Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 47/279 (16%), Positives = 88/279 (31%), Gaps = 34/279 (12%)
Query: 170 YKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLA----AEETNETHDLYKLNV 225
K TY+ + G+ +SKD+ W + + L ++ ++
Sbjct: 6 IKYNGTYYIFFSGDDKNGNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWA--- 62
Query: 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHG------- 278
P ++Y + GK+ ++ + +GVA ++ GP+
Sbjct: 63 ---PSIVYIE-NGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAAD 118
Query: 279 -FDSRDMTIFKDDDGVAYLVYSSEDNSELHI-------GPLTSDYLDVSNVVRRILVGQH 330
+ RD +F+DDDG YLV+ S D+ T ++ G+
Sbjct: 119 VSNFRDPFVFEDDDGKWYLVFGSGDHHNFGGIFLYESDDDTTWKKGSAELLISEGEGGKQ 178
Query: 331 REAPALFKHLGTYYMVTS---GCTGWAPNEALVHAAESIMGPWEDM---GNPCIGGNKVF 384
E P L K G YY+ S + +ES GP+
Sbjct: 179 IEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLSLTGGND 238
Query: 385 RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY 423
+ + + + ++ A AD +
Sbjct: 239 GGVGPYHAAAFNDAGGR--VVLVYHAYNVQYADAPTYGW 275
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 comprises sucrose-6-phosphate hydrolases, invertases, inulinases, levanases, eukaryotic fructosyltransferases, and bacterial fructanotransferases while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Members of this clan are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) that catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. Structures of all families in the two clans manifest a funnel-shaped active site that comprises two subsites with a single route for access by ligands. Length = 286 |
| >gnl|CDD|185727 cd08986, GH43_7, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 39/244 (15%)
Query: 190 GVGCYSSKDMWTWKNEGIVL------AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMW 243
G+ + SKD+ W++ G++ + D + N + P++ Y G++ +
Sbjct: 37 GIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVWAPELHYIK--GRWYLV 94
Query: 244 MHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303
+++ Y +++ ++ S GP+ ++ +P F D ++F+DDDG YLV+ +
Sbjct: 95 ACMNNPGYGGSSILLSTSGKIEGPYKHITGNKPL-FPGIDPSLFEDDDGKVYLVWHNT-- 151
Query: 304 SELHIGPLTSDYLDVSNVVRRILVGQHR-------EAPALFKHLGTYYMVTSGCTGWAPN 356
I L D ++ RI E +FK+ G YY+ T W+ +
Sbjct: 152 ---LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFG---TAWSTD 205
Query: 357 -------EALVHAAESIMGPWEDMGNPC--IGGNKVFR------LTTFFAQSTYVIPLAG 401
+ A+ I GP+ +G N F+ T F +P
Sbjct: 206 KGRKGSYDLYYAVADKITGPYGARYFAGRFLGHNTPFQDLDGRWWCTAFFNPAANVPPLC 265
Query: 402 LPGL 405
G+
Sbjct: 266 RDGI 269
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 269 |
| >gnl|CDD|185742 cd09001, GH43_XYL_2, Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 283 DMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR------EAPAL 336
D ++ DDDG AYLVY + + L+ D V ++++ E L
Sbjct: 122 DPSLLFDDDGTAYLVYG---GGTIRLVELSPDLTGV-GGKDQVIIDAGEEIGLGAEGSHL 177
Query: 337 FKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
+K G YY+ G ++S+ GP+E
Sbjct: 178 YKINGYYYIFNI-AWGGGGRTQTCLRSKSLTGPYE 211
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 269 |
| >gnl|CDD|185722 cd08981, GH43_2, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207
I+ IL D + TY+ YG P + G Y SKD+ W+
Sbjct: 4 IRIRDPFILADPETGTYYLYG--TTDPNIWG-------GEGTGFDVYKSKDLKDWEGPYP 54
Query: 208 VLAAEET-NETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTG 266
V + + + V E Y G+Y M+ + + + +SD P G
Sbjct: 55 VFRPPDDFWADDNFWAPEVHE-----YK---GRYYMFATFHNPGGERRGTAILVSDSPEG 106
Query: 267 PFDYLYSK--RPHGFDSRDMTIFKDDDGVAYLVYSSE 301
PF P + D T++ D+DG ++V+ E
Sbjct: 107 PFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHE 143
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 291 |
| >gnl|CDD|185744 cd09003, GH43_AXH_1, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 49/241 (20%), Positives = 71/241 (29%), Gaps = 74/241 (30%)
Query: 187 DIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER----------PKVIYNDR 236
+I + SS DM W + G + V P +
Sbjct: 44 NINDITVISSDDMVNWTDHGEI---------------FVPNGIAKWAGNSWAPSIAVKKI 88
Query: 237 TGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHG-----------------F 279
GK +++ + +GV +D P GP+ P G F
Sbjct: 89 NGKGKFYLYFAN---GGGGIGVLTADSPVGPW-----TDPLGKPLITGSTPGCAGVVWLF 140
Query: 280 DSRDMTIFKDDDGVAYLVY-------SSEDNSELHIGPLTSDYLDVSNVVRRILVGQHRE 332
D +F DDDG YL + + + + L D + V I E
Sbjct: 141 DP---AVFVDDDGQGYLYFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAPYFFE 197
Query: 333 APALFKHLGTYYMVTSGCTGWAPNEALVHAAESI--------MGPWED----MGNPCIGG 380
A L K GTYY S CT + + I MGP+ + NP
Sbjct: 198 ASGLHKINGTYYY--SYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIILKNPGAFF 255
Query: 381 N 381
Sbjct: 256 G 256
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 311 |
| >gnl|CDD|226038 COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 58/243 (23%), Positives = 88/243 (36%), Gaps = 47/243 (19%)
Query: 229 PKVIYNDRTGKYVMWMHIDD-----CNYTKAAVGVAISDYPTGPF-DYLYSKRPHGFDSR 282
P + Y+D GK+ W++ D Y A + ++ GP+ D + + D
Sbjct: 94 PDLSYHD--GKF--WLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIKLNGSNAIDP- 148
Query: 283 DMTIFKDDDGVAYLVYSSED--NSELHIGPLTSDYLDVSNVVRRILVGQHR--------- 331
++F D DG +LV S D + D + LVGQ
Sbjct: 149 --SLFFDKDGRKWLVNGSWDGGIFMHSFAGIILQEYDKTTQK---LVGQGYKIIFDGGNG 203
Query: 332 ---EAPALFKHLGTYYMVTS--GCTGWAPNEALVHAAESIMGPWEDM-GNPCIGGNKVFR 385
E P L+K G YY+ + G T + + + SI GP+ED GNP
Sbjct: 204 GLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSK-SIDGPYEDHPGNP--------- 253
Query: 386 LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYI---WLPLIVRGPADRPLEYNF 442
L T + AG L + W A L + L R +PL ++
Sbjct: 254 LLTSRDNPENPLQKAGHGTLVVTPTGEWYFAYLLGRPGTGYGYCALG-RETGLQPLTWHD 312
Query: 443 GFP 445
G+P
Sbjct: 313 GWP 315
|
Length = 549 |
| >gnl|CDD|185739 cd08998, GH43_ABN_1, Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 53/216 (24%), Positives = 79/216 (36%), Gaps = 34/216 (15%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETH-DLYKLNVLERPKVIYNDRTGKYVMWM--HI 246
G+ SKD+ W G V + D L P VIY + GKY ++
Sbjct: 21 GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYLN--GKYYLYYSVST 78
Query: 247 DDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSR---------DMTIFKDDDGVAYLV 297
N +A+G+A SD D ++ +S D +F D+DG +L
Sbjct: 79 FGSNR--SAIGLATSDTLP---DGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLS 133
Query: 298 YSS--------EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTS- 348
+ S E + + G N+ R EAP + G YY+ S
Sbjct: 134 FGSFWGGIFLVELDPK--TGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSY 191
Query: 349 -GCTGWAPNE--ALVHAAESIMGPWEDM-GNPCIGG 380
GC + V ++SI GP+ D GN + G
Sbjct: 192 GGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDMLNG 227
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 288 |
| >gnl|CDD|185741 cd09000, GH43_XYL_1, Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 40/140 (28%)
Query: 261 SDYPTGPFDYLYSK----RPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYL 316
+D P GP +S G D ++F DDDG YLV + D + G
Sbjct: 100 ADDPAGP----WSDPVWLDSGGIDP---SLFFDDDGKVYLVGNGWDERRGYNGHGG---- 148
Query: 317 DVSNVVRRI------LVGQHR-----------EAPALFKHLGTYYMVTS-GCTGWAPNEA 358
++ I L+G+ + E P L+K G YY++ + G TG+ +
Sbjct: 149 ---IWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGTGY--GHS 203
Query: 359 LVHA-AESIMGPWEDM-GNP 376
+ A + SI GP+E NP
Sbjct: 204 VTVARSRSITGPYEPAPNNP 223
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 288 |
| >gnl|CDD|185720 cd08979, GH_J, Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 226 LERPKVIYNDRTGKYVMW-MHIDDCNYTKAAVGVAISD-------YPTGPFDYLYSKRPH 277
+ P V+ + G Y M+ D +G+A S + P Y
Sbjct: 66 VWTPSVVRDP-DGTYRMFYTGYDRPKGAVQRIGLATSKDLIHWTKHGPNPVPRWYESGNP 124
Query: 278 GF----DSRDMTIFKDDDGVAY-LVYSSEDNSELH-IGPLTSD------YLDVSNVVRRI 325
G RD + +D++G + + Y + D E IG TS + R
Sbjct: 125 GPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIGLATSPDLIHWTPVPPPPGPRTG 184
Query: 326 LVGQHREAPALFKHLGTYYMVTSG 349
E P + K G +Y++ SG
Sbjct: 185 YDDGQLEVPQVVKIDGRWYLLYSG 208
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 276 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 100.0 | |
| cd09003 | 311 | GH43_AXH_1 Glycosyl hydrolase family 43. This glyc | 100.0 | |
| cd08988 | 279 | GH43_ABN Glycosyl hydrolase family 43. This glycos | 100.0 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 100.0 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 100.0 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 100.0 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 100.0 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 100.0 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 100.0 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 100.0 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 100.0 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 100.0 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 100.0 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 100.0 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 100.0 | |
| cd08982 | 295 | GH43_3 Glycosyl hydrolase family 43. This glycosyl | 100.0 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 100.0 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 100.0 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 99.97 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 99.97 | |
| COG3507 | 549 | XynB Beta-xylosidase [Carbohydrate transport and m | 99.96 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 99.94 | |
| cd08987 | 303 | GH62 Glycosyl hydrolase family 62, characterized a | 99.93 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 99.87 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 99.87 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 99.86 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 99.83 | |
| COG3940 | 324 | Predicted beta-xylosidase [General function predic | 99.82 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 99.73 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 99.71 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 99.63 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 99.61 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 99.59 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 99.59 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 99.53 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 99.53 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 99.5 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 99.5 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 99.48 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 99.46 | |
| cd08988 | 279 | GH43_ABN Glycosyl hydrolase family 43. This glycos | 99.43 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 99.43 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 99.42 | |
| cd09003 | 311 | GH43_AXH_1 Glycosyl hydrolase family 43. This glyc | 99.41 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 99.4 | |
| PF02435 | 428 | Glyco_hydro_68: Levansucrase/Invertase; InterPro: | 99.4 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 99.37 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 99.37 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 99.36 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 99.34 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 99.34 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 99.34 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 99.33 | |
| cd08982 | 295 | GH43_3 Glycosyl hydrolase family 43. This glycosyl | 99.25 | |
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 99.23 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 99.19 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 99.08 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 99.08 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 99.06 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 99.03 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 99.0 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 98.91 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 98.85 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 98.85 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 98.82 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 98.8 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 98.79 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 98.59 | |
| COG3507 | 549 | XynB Beta-xylosidase [Carbohydrate transport and m | 98.58 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 98.51 | |
| cd08987 | 303 | GH62 Glycosyl hydrolase family 62, characterized a | 97.89 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 97.83 | |
| KOG0228 | 571 | consensus Beta-fructofuranosidase (invertase) [Car | 97.82 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 97.17 | |
| PF02435 | 428 | Glyco_hydro_68: Levansucrase/Invertase; InterPro: | 97.08 | |
| KOG0228 | 571 | consensus Beta-fructofuranosidase (invertase) [Car | 96.1 | |
| COG2152 | 314 | Predicted glycosylase [Carbohydrate transport and | 96.05 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 95.81 | |
| COG2152 | 314 | Predicted glycosylase [Carbohydrate transport and | 94.84 | |
| COG3940 | 324 | Predicted beta-xylosidase [General function predic | 93.55 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 93.48 | |
| PF13810 | 316 | DUF4185: Domain of unknown function (DUF4185) | 89.67 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 89.29 |
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=443.32 Aligned_cols=264 Identities=57% Similarity=1.032 Sum_probs=231.1
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
|+|||++|++. +++||||+|++.... ..+.+|.||+|+||+||++++.||+..+. .......+.+|
T Consensus 1 i~ah~~~i~~~--~~~yY~ygs~~~~~~----------~~~~gi~~~sS~DLvnW~~~g~vl~~~~~--~~~~~~~~~~w 66 (265)
T cd08985 1 IQAHGGGILKV--GGTYYWYGENKGGGD----------TAFGGVSCYSSTDLVNWTFEGLALTPEED--SADLGPGRIIE 66 (265)
T ss_pred CccccCceEEE--CCEEEEEEEecCCCC----------cccccEEEEECCCCccceECceecccccc--ccccccCcEEE
Confidence 67999999986 489999999875311 23678999999999999999999987652 01123567899
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELH 307 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~ 307 (466)
||+|+|++++|+|||||++.+.++...+||||+|++|+|||++.+...+.+..+|||+||+|+||++||+|+++.+..++
T Consensus 67 aP~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~~~~i~ 146 (265)
T cd08985 67 RPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLY 146 (265)
T ss_pred CCeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCCCCceE
Confidence 99999998999999999997655567899999999999999998766667788999999999999999999987667899
Q ss_pred EEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCCCccccCCccceee
Q 012300 308 IGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT 387 (466)
Q Consensus 308 i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~gnPi~~~~~~~~~~ 387 (466)
|+||++|++++.++...+..+..+|||+|||++|+|||+||.+++|.++...+++|++|+|||+..+++..++ .+
T Consensus 147 i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~~~~~-----~~ 221 (265)
T cd08985 147 IYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGG-----ST 221 (265)
T ss_pred EEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcCCCCC-----Cc
Confidence 9999999999999887777788999999999999999999999899888777789999999999999875443 58
Q ss_pred ccCCCceEEEcccC-CcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 012300 388 TFFAQSTYVIPLAG-LPGLYIFMADRWNPADLRESRYIWLPLIV 430 (466)
Q Consensus 388 t~~sq~~~v~~~~G-~~~~yi~~~d~w~~~~~~~~R~v~lPl~~ 430 (466)
||.+|+++|++++| ++++||||||||++.++.++|||||||+|
T Consensus 222 t~~sq~~~v~~~~g~~~~~~~~~~drw~~~~~~~s~yvwlp~~~ 265 (265)
T cd08985 222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPLTF 265 (265)
T ss_pred EECCCcceEEEeCCCCCCEEEEEEcccCCCCCCCCEEEEEEeeC
Confidence 99999999999998 44799999999999999999999999975
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=347.14 Aligned_cols=263 Identities=20% Similarity=0.225 Sum_probs=190.5
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC-CCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA-EETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~-~~~~~~~~~~~~~~iWAP 229 (466)
+||.|++. +|+||+|+|......-.....+.....+++|.||+|+||++|+.++.||.. ....| ...+|||
T Consensus 10 aDP~~~~~--~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w------~~~~WAP 81 (311)
T cd09003 10 ADPTAVVY--NGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKW------AGNSWAP 81 (311)
T ss_pred CCCCeEEE--CCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCc------ccccCCC
Confidence 68888875 599999999753100000000112235679999999999999999999973 33333 2368999
Q ss_pred eEEEEccC----CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-cc-cC----C---CCCCccCceEEEcCCCcEEE
Q 012300 230 KVIYNDRT----GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YS-KR----P---HGFDSRDMTIFKDDDGVAYL 296 (466)
Q Consensus 230 ~viyn~~~----GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~~-~~----p---~g~~~iDp~vF~DdDG~~YL 296 (466)
+|++ ++ |+|||||++. ..+|+||+|++|+|||++. +. .. + ....+|||+||+|+||+.||
T Consensus 82 ~v~~--~~~~~~gkyylyy~~~-----~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl 154 (311)
T cd09003 82 SIAV--KKINGKGKFYLYFANG-----GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDGQGYL 154 (311)
T ss_pred ceEE--eccCCCCEEEEEEecC-----CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCCCEEE
Confidence 9998 55 9999999863 3579999999999999975 21 11 1 12347999999999999999
Q ss_pred EEEecCC-------CcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC-----CCCCCcEEEE-Ee
Q 012300 297 VYSSEDN-------SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT-----GWAPNEALVH-AA 363 (466)
Q Consensus 297 ~~g~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t-----g~~~n~~v~~-~S 363 (466)
+|++... +.++++||++|++++.++...+..+..+|||+|+|++|+|||+||... +...+|.+.+ +|
T Consensus 155 ~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s 234 (311)
T cd09003 155 YFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAPYFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGRIAYMTS 234 (311)
T ss_pred EECCccCCCccccCCCEEEEEeCCCceeccCCceEccCCCceEeeeEEEECCEEEEEEeCCCCccCCCCCCceeEEEEEc
Confidence 9986322 479999999999999998877776678999999999999999999642 2345677765 89
Q ss_pred CCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCC----CCCCeeE-EEEEEEcC
Q 012300 364 ESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPAD----LRESRYI-WLPLIVRG 432 (466)
Q Consensus 364 ds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~----~~~~R~v-~lPl~~~~ 432 (466)
++|+|||++.+. ++...... ....+++|++|++.+| +||++||.+-.+.. ....|++ +.||.|++
T Consensus 235 ~~~~GP~~~~g~-il~~~~~~-~~~~g~gH~s~~~~~g--~~y~vyH~~~~~~~~~~~~~~~R~~~i~~~~~~~ 304 (311)
T cd09003 235 KNPMGPFTYKGI-ILKNPGAF-FGNGGNNHHSIFEFKG--KWYIAYHARTLAKALGGATAGYRSPHIDELTYNE 304 (311)
T ss_pred CCCCCCcccCCE-eccCCccc-cCCccCCCccEEEeCC--eEEEEEeCCcCCccccCCCCceEEEEEEEEEECC
Confidence 999999998764 33321100 1123455566777766 89999986554421 2446776 47899985
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose |
| >cd08988 GH43_ABN Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=337.57 Aligned_cols=252 Identities=20% Similarity=0.248 Sum_probs=187.7
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccc--ccCCCCeeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH--DLYKLNVLER 228 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~--~~~~~~~iWA 228 (466)
|||+|++. +++||||+|. .++.|++|+||+||+.++.+|+.... |.. .....+.+||
T Consensus 1 ~DP~vi~~--~~~YY~~~T~------------------~g~~v~~S~DL~~W~~~g~~~~~~~~-~~~~~~~~~~~~~WA 59 (279)
T cd08988 1 HDPVIIKE--GDTWYVFGTG------------------PGITILSSKDLVNWTYSGSAFATEPT-WKKRVPPSFDGHLWA 59 (279)
T ss_pred CCCEEEEE--CCEEEEEEec------------------CCEEEEECCCcCCccccCccccCCCc-cccccCCCCCCCEec
Confidence 78999987 4799999984 15899999999999999999875432 321 1123467999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc-----c----cCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY-----S----KRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~-----~----~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
|+|++ .+|+|||||++...+....+||||+|++|+|||++.+ . ..+.+..+|||++|+|+||+.||+|+
T Consensus 60 P~v~~--~~G~yylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g 137 (279)
T cd08988 60 PDIYQ--HNGKFYLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFG 137 (279)
T ss_pred ceEEE--ECCEEEEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEec
Confidence 99998 6799999999875444467899999999999998654 1 11224568999999999999999999
Q ss_pred ecCCCcEEEEEcCCCCCCc--cccEEEeecC----ceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEeCCCCCC
Q 012300 300 SEDNSELHIGPLTSDYLDV--SNVVRRILVG----QHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAAESIMGP 369 (466)
Q Consensus 300 ~~~n~~i~i~~Ls~D~~~~--~g~~~~i~~g----~~~EgP~ifK~~G~YYL~yS~~t---g~~~n~~v~-~~Sds~~GP 369 (466)
++. +.|.++||++|++.+ .++...+..+ ...|||+|+|++|+||||+|... +...+|.+. ++|++|+||
T Consensus 138 ~~~-~gi~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GP 216 (279)
T cd08988 138 SFW-GGIKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGP 216 (279)
T ss_pred ccC-CCEEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCC
Confidence 753 579999999999886 3555555433 57999999999999999999632 345567665 589999999
Q ss_pred ceeC-CCccccCCcc--c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEE
Q 012300 370 WEDM-GNPCIGGNKV--F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIV 430 (466)
Q Consensus 370 w~~~-gnPi~~~~~~--~--~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~-lPl~~ 430 (466)
|+.. ++|++..... + ...-.+.+|++|+..+| ++||+||..-.. ....|.++ .||.|
T Consensus 217 y~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~g--~~~~~yH~~~~~--~~~~r~~~i~~l~~ 279 (279)
T cd08988 217 YLDKTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDDG--KDYLVLHAYDAA--DNGEPKLKILPLHW 279 (279)
T ss_pred CCCCCCCCcccCCceEEEcCCCcEEcCCCCEEEeCCC--CEEEEEEEeeCC--CCCCcEEEEEeccC
Confidence 9997 7888753210 0 01224455667777665 789888865443 35667765 46654
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=334.71 Aligned_cols=258 Identities=26% Similarity=0.347 Sum_probs=200.4
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||.|++. +|+||||+|..... ..+.++.+++|+||++|+.++.+|+..+..| .
T Consensus 1 NPv~~g~~~DP~i~~~--~g~yY~~~t~~~~~-----------~~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~-----~ 62 (275)
T cd09004 1 NPILPGWYADPEIRIF--GGTYYIYPTSDGAG-----------GEQTPFDVFSSKDLVNWTKEGIILDMADVSW-----A 62 (275)
T ss_pred CCcCCCCCCCCCeEEE--CCEEEEEEeccCCC-----------CCeeEEEEEECCCCCCceECcccccccCCcc-----c
Confidence 4553 368999986 48999999864310 0135799999999999999999987653332 3
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-ccc-C---CCCCCccCceEEEcCCCcEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YSK-R---PHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~~~-~---p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
.+.+|||+|++ .+|+|||||++. .+|+||+|++|+|||++. +.. . ..+..+|||+||+|+||+.||+
T Consensus 63 ~~~~wAP~v~~--~~g~yy~yys~~------~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~ 134 (275)
T cd09004 63 NRAAWAPSVIE--RNGKYYFYFSAN------GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLY 134 (275)
T ss_pred CCCcCCCeEEE--ECCEEEEEEEcC------CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEE
Confidence 56799999998 679999999974 579999999999999973 211 1 1256799999999999999999
Q ss_pred EEecCCCcEEEEEcCCCCCCccccEEEe--ecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeCCCCCCceeCC
Q 012300 298 YSSEDNSELHIGPLTSDYLDVSNVVRRI--LVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAESIMGPWEDMG 374 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~~~~~g~~~~i--~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sds~~GPw~~~g 374 (466)
|+++ +.+.+++|++|+++++++...+ ..+...|||+|+|++|+|||+||.+....++|.+.+ +|++|+|||++.+
T Consensus 135 ~~~~--~~~~i~~l~~d~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~ 212 (275)
T cd09004 135 WGGW--GHCNVAKLNEDMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPG 212 (275)
T ss_pred EcCc--CCEEEEEECCCcccccCcceeeeccCCCceecceEEEECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCC
Confidence 9864 4688999999999988776553 335689999999999999999997654456677765 7999999999987
Q ss_pred CccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEEcCCCCC
Q 012300 375 NPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIVRGPADR 436 (466)
Q Consensus 375 nPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~-lPl~~~~~~~~ 436 (466)
++++.... ...++.+|++|++.++..+||++||.+..+......|.++ .||.|++ |+
T Consensus 213 ~~~~~~~~---~~~~g~gH~~~~~~~~~~~~~~~yh~~~~~~~~~~~R~~~i~~~~~~~--dG 270 (275)
T cd09004 213 NIILQQDP---GIATGPGHHSVVNVPGTDEWYIVYHRRPLPETDGNHRQTCIDRMEFNE--DG 270 (275)
T ss_pred cEeeeCCC---CCcccCCCCEEEEeCCCCeEEEEEeCCCCCCCCCceeeEEEEEEEECC--CC
Confidence 66654321 3456777778888774447999999877654566778866 5999986 55
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=335.55 Aligned_cols=254 Identities=22% Similarity=0.322 Sum_probs=194.4
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
++.|||.|++++++|+||||+|..... + ....+++.||+|+||+||+.++.|+...+..| ....+|
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~-----~----~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~-----~~~~~W 69 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNI-----W----GGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFW-----ADDNFW 69 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccc-----c----ccCCCcEEEEECCChhcccccceeeccCCCcC-----cccccc
Confidence 457999999987789999999975310 0 12346899999999999999999997654433 345799
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCCCCCCccCceEEEcCCCcEEEEEEec----
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPHGFDSRDMTIFKDDDGVAYLVYSSE---- 301 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~g~~~iDp~vF~DdDG~~YL~~g~~---- 301 (466)
||+|++ .+|+|||||++...+....+|+||+|++|+|||++... ..+.+..+|||++|+|+||+.||+|++.
T Consensus 70 AP~v~~--~~G~yyly~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~~~~ 147 (291)
T cd08981 70 APEVHE--YKGRYYMFATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEWVQV 147 (291)
T ss_pred CCeeee--eCCEEEEEEEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEeccccc
Confidence 999997 89999999998654333467999999999999998642 2234457899999999999999999752
Q ss_pred CCCcEEEEEcCCCCCCccccEEEeec------------------CceeeeeEEEEE-CCEEEEEEeCCCCCCCCcEEEE-
Q 012300 302 DNSELHIGPLTSDYLDVSNVVRRILV------------------GQHREAPALFKH-LGTYYMVTSGCTGWAPNEALVH- 361 (466)
Q Consensus 302 ~n~~i~i~~Ls~D~~~~~g~~~~i~~------------------g~~~EgP~ifK~-~G~YYL~yS~~tg~~~n~~v~~- 361 (466)
.++.|+++||++|++++.|++++++. ....|||+|+|+ +|+|||+||.++ .++|.+.+
T Consensus 148 ~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~--~~~Y~~~~~ 225 (291)
T cd08981 148 YDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFS--DGGYAQGVA 225 (291)
T ss_pred CCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecC--CCCEEEEEE
Confidence 24679999999999998888776542 126799999995 899999999643 45676654
Q ss_pred EeCC--CCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 362 AAES--IMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 362 ~Sds--~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
+|++ |+|||++.++|++.. ..+|+ ++|...+| +||++||.. . ....+|.+++||.+++
T Consensus 226 rs~s~~~~GPy~~~~~pi~~~-------~~GH~-s~v~~~~G--~~~~vyH~~-~--~~~~~~~~~~~~~~~~ 285 (291)
T cd08981 226 RSESGTLLGPWVQEPEPLISD-------DGGHG-MLFRTFDG--RLMLSLHTP-N--KHPDERPIFIEVDEDG 285 (291)
T ss_pred EcCCCCccCCcEECCCcccCC-------CCCCC-eeEEcCCC--CEEEEEECC-C--CCCCeeeEEEEEeecC
Confidence 6776 999999998887653 12222 24446666 588888755 3 3455778899999986
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=324.91 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=191.3
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
||.|++. +|+||+|+|.+.... .+ ....+.++.|++|+||+||+.++.||+..+.. .+..+.+|||+|
T Consensus 2 DP~~~~~--~~~yy~~~t~~~~~~-----~~-~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~----~~~~~~~wAP~i 69 (274)
T cd08990 2 DPAAHVF--NGRVYIYTSHDEAGG-----GG-DDFCMNDYHVFSSPDLVNWTDHGVILSVTDFP----AWAKGQAWAPDV 69 (274)
T ss_pred CCCcEEE--CCEEEEEeCCCCCCC-----CC-CccccceEEEEECCCCCCcEECcccccCCCCC----ccccCCcCcCeE
Confidence 6778875 599999999764211 00 01245789999999999999999999865443 123577999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-----CCCCCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-----PHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-----p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
++ .+|+|||||++... ....+|+||+|++|+|||++.+... +.+...|||++|+|+||++||+|++. ..+
T Consensus 70 ~~--~~g~yy~yy~~~~~-~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--~~~ 144 (274)
T cd08990 70 VE--KNGKYYLYFPARDK-DGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG--LGL 144 (274)
T ss_pred EE--ECCEEEEEEEeecC-CCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc--CCE
Confidence 98 78999999998753 2457899999999999999875432 23567899999999999999999864 478
Q ss_pred EEEEcCCCCCCccccEEEee--------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeCCCcc
Q 012300 307 HIGPLTSDYLDVSNVVRRIL--------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDMGNPC 377 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~--------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~gnPi 377 (466)
.+++|++|+++++++...+. .....|||.|+|++|+|||+||.+. .+.+. ++|++|+|||+..+.++
T Consensus 145 ~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~ 220 (274)
T cd08990 145 RVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVIL 220 (274)
T ss_pred EEEEeCccccccCCCcEEEEeccccCCCCCCcccceeEEEECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEe
Confidence 99999999999988766553 2357899999999999999999754 24444 58999999999887655
Q ss_pred ccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 378 IGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 378 ~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
.. + ...+.+|+++++.+| +|||+||..-...+....|. .+.||.|++
T Consensus 221 ~~-~-----~~~g~gh~~~~~~~g--~~y~~yh~~~~~~~~~~~R~~~~~~~~w~~ 268 (274)
T cd08990 221 DP-P-----VNGGTNHGSIVEFKG--QWYLFYHRATLSGGGDFRRSVCIDELEYNA 268 (274)
T ss_pred cC-C-----CCCCCCCCeEEEECC--eEEEEEECCcCCCCCCcceeEEEEEEEECC
Confidence 32 1 223445556777766 78998886544433455676 457999975
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=323.75 Aligned_cols=258 Identities=19% Similarity=0.220 Sum_probs=184.5
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||.|++. +++||+++|... .++++.|++|+||+||+..+.++......+......
T Consensus 1 NPvi~~~~~DP~ii~~--~~~yY~~~t~~~--------------~~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~ 64 (269)
T cd08989 1 NPILKGDNPDPSIIRA--GDDYYMASSTFE--------------WFPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPY 64 (269)
T ss_pred CCcCCCCCCCCcEEEE--CCeEEEEECccc--------------cCCCcEEEECCccCCCEEccccccCccccccccCCC
Confidence 4553 379999986 589999987532 246799999999999999999887543321111112
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
...+|||+|++ .+|||||||++... ....+|+||+|++|+|||++... ....+|||++|+|+||+.||+|+++
T Consensus 65 ~~~~WAP~v~~--~~G~yy~yy~~~~~-~~~~~i~va~sd~~~Gpw~~~~~---~~~~~IDp~~f~D~dG~~Yl~~~~~- 137 (269)
T cd08989 65 SGGIWAPCLSY--YDGKFWLIYTAVKV-WKDCHNYLFTAEDITGPWSRPIF---LNYGGFDPSLFHDDDGKKYLINMGW- 137 (269)
T ss_pred CCcEEcceEEE--ECCEEEEEEecccc-CCCceEEEEEECCCCCCCcCCEE---CCCCcccCceEEcCCCCEEEEecCC-
Confidence 45699999998 79999999998643 24578999999999999997432 1236899999999999999999865
Q ss_pred CCcEEEEEcCCCCCCccccEE--Eeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC-CCc
Q 012300 303 NSELHIGPLTSDYLDVSNVVR--RILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-GNP 376 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~--~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~-gnP 376 (466)
+.|++++|++|...+.++.. .+.. ....|||+|+|++|+||||||.......+...+++|++|+|||+++ +||
T Consensus 138 -~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~~p 216 (269)
T cd08989 138 -SGIRLQEYSPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPDNP 216 (269)
T ss_pred -CcEEEEEEChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCCCc
Confidence 57999999999887766543 2322 3579999999999999999996433333334456899999999998 568
Q ss_pred cccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCee-EEEEEEEc
Q 012300 377 CIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRY-IWLPLIVR 431 (466)
Q Consensus 377 i~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~ 431 (466)
++..... .....+.+|++|++. +| +||++||.. ........|. .+.||.|.
T Consensus 217 l~~~~~~-~~~~~g~GH~s~v~~~~G--~~~~~~h~~-~~~~~~~gR~~~l~~i~W~ 269 (269)
T cd08989 217 LVLWDTP-GNPLQKCGHASLVETPDG--KWYLAHLTG-RPGFCPLGRETALQPIEWE 269 (269)
T ss_pred ceeecCC-CCCcccCCCcCeEECcCC--CEEEEEEee-CCCCCccCcceEEEEEEeC
Confidence 6432100 012234455566654 45 588888753 3322334466 56888873
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=320.25 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=183.4
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
.|||+. +||+|+++ +++|||++|... ...++.||+|+||+||+.++.+++..
T Consensus 7 ~nPv~~~~~~DP~i~~~--~~~yY~~~t~~~--------------~~~gi~i~~S~DL~~W~~~g~~~~~~--------- 61 (280)
T cd09002 7 RNPILAGDYPDPSILRD--GEDYYMTHSSFK--------------YTPGLVIWHSRDLVNWTPVGPALPEY--------- 61 (280)
T ss_pred eCCccCCCCCCCEEEEE--CCEEEEEEcchh--------------cCCCEEEEECCCcCCceEccccccCC---------
Confidence 567753 69999986 589999887421 23579999999999999999887642
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEec
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
.+.+|||+|++ ++|||||||++...+ ...+|+||+|++|+|||++..... ...+|||+||+|+||+.||+|+
T Consensus 62 -~~~~WAP~i~~--~~gkyy~yys~~~~~-~~~~~~va~ad~p~Gpw~~~~~~~--~~~~IDp~vf~DddG~~Yl~~~-- 133 (280)
T cd09002 62 -EGDVWAPDLCK--YDGRYYIYFPAIPEG-GNWTNMVIWADSPEGPWSKPIDLK--IGGCIDPGHVVDEDGNRYLFLS-- 133 (280)
T ss_pred -CCCEEcCeeEE--ECCEEEEEEEeecCC-CCceEEEEEECCCCCCCcCCEecC--CCCccCCceEEcCCCCEEEEEC--
Confidence 24589999997 899999999987543 357899999999999999753211 1236999999999999999996
Q ss_pred CCCcEEEEEcCCCCCCccccEEEeec-----------CceeeeeEEEEECCEEEEEEeCCCCCCCC--cEE-EEEeCCCC
Q 012300 302 DNSELHIGPLTSDYLDVSNVVRRILV-----------GQHREAPALFKHLGTYYMVTSGCTGWAPN--EAL-VHAAESIM 367 (466)
Q Consensus 302 ~n~~i~i~~Ls~D~~~~~g~~~~i~~-----------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n--~~v-~~~Sds~~ 367 (466)
.+.+++|++|+++++|+...+.. +..+|||+|+|++|+||||||.+.++.++ +.+ +++|++|+
T Consensus 134 ---~~~~~~l~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~ 210 (280)
T cd09002 134 ---GGDRVRLTADGLSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVH 210 (280)
T ss_pred ---CeeEEEECccccEecCcCEEEecCcccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCC
Confidence 35678999999998887665543 23589999999999999999954333332 334 45899999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
|||++. ++|++..... ...-.+.+|++|+.. +| +||++||..- .......|.+ ..||+|++
T Consensus 211 GP~~~~~~~pi~~~~~~-~~~~~g~GH~~i~~~~~g--~~~~vyH~~~-~~~~~~gR~~~l~~l~w~~ 274 (280)
T cd09002 211 GPWENSPYNPLVRTQSP-QEPWWSKGHATLVDGPDG--QWWMVYHAYE-KGYLTLGRQTLLEPIEWTE 274 (280)
T ss_pred CCCccCCCCcEEecCCC-CCCceeCCCCcEEECCCC--CEEEEEEeec-CCCCCCCcEEEEEEEEECC
Confidence 999998 6888864210 011124556667765 44 7888887542 2222334765 58999975
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=320.28 Aligned_cols=258 Identities=19% Similarity=0.238 Sum_probs=188.9
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
..||.|++. +|+||++.|... ...+|.|++|+||++|+.++.+|.........+......+|||
T Consensus 8 ~~DP~i~~~--~~~yy~~~t~~~--------------~~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP 71 (288)
T cd09000 8 YPDPSICRV--GDDYYLVTSSFE--------------YFPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAP 71 (288)
T ss_pred CCCCCEEEE--CCEEEEEECCcc--------------cCCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcc
Confidence 358899986 489999976321 1357999999999999999999875443211111235679999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC-------
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED------- 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~------- 302 (466)
+|++ .+|+|||||++.... ...+++||+|++|+|||++.... ...+|||+||+|+||+.||+|+++.
T Consensus 72 ~v~~--~~g~yy~yy~~~~~~-~~~~~~v~~s~~p~gpw~~~~~~---~~~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~~ 145 (288)
T cd09000 72 TIRY--HDGTFYLITTNVDGM-KDGGNFIVTADDPAGPWSDPVWL---DSGGIDPSLFFDDDGKVYLVGNGWDERRGYNG 145 (288)
T ss_pred eEEE--ECCEEEEEEEecCCC-CCCceEEEEeCCCCCCCcCCEec---CCCccCCceeEcCCCCEEEEecccCCccccCC
Confidence 9998 689999999987533 34689999999999999964321 2278999999999999999999753
Q ss_pred CCcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeC-CCcc
Q 012300 303 NSELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDM-GNPC 377 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~-gnPi 377 (466)
.+.|++++|++|+.++.+++..+..+ .+.|||+|+|++|+||||||.+.. ..++.+. ++|++|+|||+++ ++|+
T Consensus 146 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~~~-~~~~~v~~~~s~~~~Gp~~~~~~~~i 224 (288)
T cd09000 146 HGGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGT-GYGHSVTVARSRSITGPYEPAPNNPI 224 (288)
T ss_pred CCcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecCCC-CCCeEEEEEEeCCCCCCCccCCCCce
Confidence 25799999999988888877666543 589999999999999999996432 2235554 5899999999986 6787
Q ss_pred ccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCC---CCCCCee-EEEEEEEcC
Q 012300 378 IGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPA---DLRESRY-IWLPLIVRG 432 (466)
Q Consensus 378 ~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~---~~~~~R~-v~lPl~~~~ 432 (466)
+.........-.+.+|++|++. +| +||++||.+-... .....|. ...+|.|++
T Consensus 225 l~~~~~~~~~~~g~gH~~~~~~~dG--~~~~~yH~~~~~~~~~~~~~~R~~~i~~~~~~~ 282 (288)
T cd09000 225 LTNRDLPDSPIQATGHADLVQTPDG--EWWAVFLATRPYGGKGFCPLGRETFLAPVTWEE 282 (288)
T ss_pred EEcCCCCCCcceeCCccceEECCCC--CEEEEEEEEcCCCCCccCcCccccEEEEEEECC
Confidence 7542100112234556667766 44 7898888653322 1244576 468999985
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=317.91 Aligned_cols=261 Identities=27% Similarity=0.352 Sum_probs=194.8
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||. .+||.|++. +++||||+|.... ..+|.|++|+||+||+.++.++......+. ..
T Consensus 3 NPv~~~~~~DP~i~~~--~~~yY~~~t~~~~--------------~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~---~~ 63 (286)
T PF04616_consen 3 NPVIDGDYADPSIVRF--GDGYYLYGTTDPE--------------GPGIPVWSSKDLVNWTDAGNVLPPPPDWDW---AN 63 (286)
T ss_dssp SSSBTSSECSEEEEEE--TTEEEEEEEEBTC--------------ESBEEEEEESSSSSEEEEEECESSTTTTST---TT
T ss_pred CCccCCCCCCCEEEEE--CCEEEEEEEcCCC--------------CCeEEEEECCCCcccccceeeecccccccc---cc
Confidence 5664 379999986 4779999987531 267999999999999999998887654321 11
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
....|||+|++ .+|+|||||+.... ....+|+||+|++|+|||+........+..+|||+||+|+||+.||+|+++.
T Consensus 64 ~~~~WAP~i~~--~~g~yy~y~~~~~~-~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~ 140 (286)
T PF04616_consen 64 NGNIWAPEIHY--INGKYYMYYSDSGG-DAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWD 140 (286)
T ss_dssp SETTEEEEEEE--ETTEEEEEEEEEST-STTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEEST
T ss_pred cccccCCeEEE--cCCeEEEEEEccCC-CCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccC
Confidence 22239999997 79999999993322 2457899999999999999876433236789999999999999999999875
Q ss_pred C----CcEEEEEcCCCCCCccccE-EEeec------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCc
Q 012300 303 N----SELHIGPLTSDYLDVSNVV-RRILV------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPW 370 (466)
Q Consensus 303 n----~~i~i~~Ls~D~~~~~g~~-~~i~~------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw 370 (466)
+ +.|.+++|++|+..+.++. ..+.. ....|||+|+|++|+|||+||+.....+ |.+. ++|++|+|||
T Consensus 141 ~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~-y~v~~~~s~~~~gp~ 219 (286)
T PF04616_consen 141 NGDPGGGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSP-YQVGYARSDSPLGPW 219 (286)
T ss_dssp TTSSEEEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTT-TEEEEEEESSTTSGG
T ss_pred CCccceeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCC-ceEEEeeccCCCCce
Confidence 4 3699999999999988876 43333 2489999999999999999996554444 6555 5899999999
Q ss_pred eeC-CCccccC-CccceeeccCCCceEEEcccCCcccEEEEEeEeC-CCCCCCCee-EEEEEEEcC
Q 012300 371 EDM-GNPCIGG-NKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN-PADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 371 ~~~-gnPi~~~-~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~-~~~~~~~R~-v~lPl~~~~ 432 (466)
+.. +++++.. ... ....+.+|++|+..+.. +||++||.+-. .......|+ .+.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~--~~~~g~gH~~~~~~~~g-~~~~~yh~~~~~~~~~~~~R~~~i~~v~~~~ 282 (286)
T PF04616_consen 220 EWKKGNPILFSRDGE--NGVYGPGHGSVFKDPDG-RWYIVYHARNPGGGGTGGGRSTRIQPVTWDA 282 (286)
T ss_dssp EETTTCBCEGTTBTT--SSCEEEEEEEEEEETTS-EEEEEEEEEETSTSTGTTCEEEEEEEEEEET
T ss_pred eeccCCeEEEeeccC--CccccCccCCEEECCCC-CEEEEEeeccCCCCCCCCCcEEEEEEEEECC
Confidence 987 5665442 111 34455566677766332 48988887665 233455676 568999986
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=316.89 Aligned_cols=246 Identities=19% Similarity=0.260 Sum_probs=178.3
Q ss_pred CCeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcc-----c
Q 012300 145 GAPIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETN-----E 216 (466)
Q Consensus 145 GnpI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~-----~ 216 (466)
.|||+ .+||.|++. +|+||+|+|+.. .+++|.|++|+||+||+.++.+++..... +
T Consensus 3 ~NPv~~~~~~DP~v~~~--~~~yY~~~t~~~--------------~~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~ 66 (269)
T cd09001 3 TNPIIYADYPDPDVIRV--GDDYYMVSTTMH--------------YSPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLE 66 (269)
T ss_pred cCCccCCCCCCCeEEEE--CCEEEEEECCcc--------------cCCCCEEEEcccccCCeEccccccccccccccccc
Confidence 36664 379999986 489999998532 13679999999999999999988654321 1
Q ss_pred ccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEE
Q 012300 217 THDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYL 296 (466)
Q Consensus 217 ~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL 296 (466)
.........+|||+|++ .+|||||||++. ..+++||+|++|+|||++.+... .+|||+||+|+||+.||
T Consensus 67 ~~~~~~~~~~WAP~v~~--~~gkyy~yys~~-----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl 135 (269)
T cd09001 67 NGGNAYGKGQWAPSLRY--HNGTFYVFFCTN-----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYL 135 (269)
T ss_pred ccCCCCCCCEECCceEE--ECCEEEEEEEec-----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEE
Confidence 10001235699999998 699999999985 24689999999999999865321 68999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCCCCccccEEEeec-----CceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEeCCCCCCc
Q 012300 297 VYSSEDNSELHIGPLTSDYLDVSNVVRRILV-----GQHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMGPW 370 (466)
Q Consensus 297 ~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~-----g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v-~~~Sds~~GPw 370 (466)
+|++ ..|+++||++|++++.++...++. +..+|||+|+|++|+||||||+.. ...+.+ +++|++|+|||
T Consensus 136 ~~~~---~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~ 210 (269)
T cd09001 136 VYGG---GTIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWG--GGGRTQTCLRSKSLTGPY 210 (269)
T ss_pred EeCC---CcEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecCC--CCCceEEEEEeCCCCCCc
Confidence 9985 379999999999998766555543 258999999999999999999754 223444 46899999999
Q ss_pred eeCCCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 371 EDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 371 ~~~gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
+... ++.... ....+.+|+++++. +| +||+++|+.. . ...++..+.||.|++
T Consensus 211 ~~~~--~~~~~~---~~~~~~gh~~~~~~~~G--~~~~~~~~~~-~--~~gR~~~~~~~~w~d 263 (269)
T cd09001 211 ESKV--VLEDGS---TGGNGPHQGGIVDTPDG--EWYFMLFQDR-G--AVGRIPHLAPVTWED 263 (269)
T ss_pred CCcc--eecCCC---CCCCCCCCEEEEECCCC--CEEEEEcCCC-C--CCCCEEEEEEEEEEC
Confidence 9863 332111 12233444556655 45 5666665422 1 122334668999973
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=313.58 Aligned_cols=258 Identities=23% Similarity=0.290 Sum_probs=193.0
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||+|++. +|+||||+|... ..++.+++|+||++|+.++.+|+..... ..
T Consensus 1 nPv~~~~~~DP~i~~~--~g~yy~~~t~~~---------------~~~i~~~~S~Dl~~W~~~g~~l~~~~~~-----~~ 58 (287)
T cd08999 1 NPVIDGDFPDPSVIRV--DGTYYAYATNGN---------------GPNVPIATSTDLVNWTYLGDAFPKLPRW-----WT 58 (287)
T ss_pred CCccCCCCCCCeEEEE--CCEEEEEEeCCC---------------CCcEEEEECCCCCCcEECCcccCCCCCc-----cc
Confidence 4554 479999986 599999999642 1468999999999999999988765432 23
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC----CCCCCccCceEEEcCCCcEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
...+|||+|++ .+|+|||||++...+....+|++|+|++|.|||+..+... ..+...|||+||+|+||++||+|
T Consensus 59 ~~~~waP~v~~--~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~ 136 (287)
T cd08999 59 GGDFWAPDVSY--VNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVW 136 (287)
T ss_pred CCCccCceEEE--ECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEE
Confidence 56799999998 6799999999875433467899999999999999764321 23467899999999999999999
Q ss_pred EecCC-----CcEEEEEcCCCCCCccccEEEee------cCceeeeeEEEEECCEEEEEEeCCCCCCC--CcEEE-EEeC
Q 012300 299 SSEDN-----SELHIGPLTSDYLDVSNVVRRIL------VGQHREAPALFKHLGTYYMVTSGCTGWAP--NEALV-HAAE 364 (466)
Q Consensus 299 g~~~n-----~~i~i~~Ls~D~~~~~g~~~~i~------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~--n~~v~-~~Sd 364 (466)
++..+ ..+++++|++|++.+.++...++ .+..+|||.|+|++|+|||+||....... +|.+. ++|+
T Consensus 137 ~~~~~~~~~~~~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~ 216 (287)
T cd08999 137 KSDGNSIGKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSK 216 (287)
T ss_pred eccCCCCCCCceEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeC
Confidence 97532 13889999999998887765553 23579999999999999999997543333 57665 4899
Q ss_pred CCCCCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEc
Q 012300 365 SIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVR 431 (466)
Q Consensus 365 s~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~ 431 (466)
+|+|||+++ ++|+...+.. ....+.+|++++.. +| +||++||.+..+......|++ +.||.|+
T Consensus 217 ~~~Gpw~~~~~~~~~~~~~~--~~~~g~gh~~~~~~~~g--~~~~~yh~~~~~~~~~~~R~~~i~~~~~~ 282 (287)
T cd08999 217 SLLGPYVKAPGPPLLTSSGN--GRWVGPGHNTVVTDDDG--RDWLLYHAWDKADSGFTGRQMYLDRLEWE 282 (287)
T ss_pred CCcCCcCCCCCCcceeccCC--CeEEcCCCCeEEECCCC--CEEEEEEEEcCCCCCCCCceEEEEEEEeE
Confidence 999999998 4566542111 22334445455554 45 689999877665434455664 5799994
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=313.19 Aligned_cols=255 Identities=27% Similarity=0.355 Sum_probs=194.6
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
||+|++++ |+||||+|.... ..++.+++|+||++|+.++.++...+..| ....+|||+|
T Consensus 2 DP~v~~~~--g~yyl~~t~~~~--------------~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~-----~~~~~waP~v 60 (294)
T cd08991 2 DPFVLRYN--GKYYAYGTGGAD--------------GRGFAVYSSPDLVDWKLHGGALLALDDDW-----GRRGFWAPEV 60 (294)
T ss_pred CCeEEEEC--CEEEEEEeCCCC--------------CCeeEEEECCCCCCceECCccccCCCCCc-----cCCcEEccEE
Confidence 68899874 899999986431 24699999999999999999887654433 3467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc-CCCCCCccCceEEEcCCCcEEEEEEecCC----CcE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVYSSEDN----SEL 306 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-~p~g~~~iDp~vF~DdDG~~YL~~g~~~n----~~i 306 (466)
++ .+|+|||||++...+....+|+||+|++|+|||+..+.. ...+..+|||+||+|+||++||+|+...+ +.|
T Consensus 61 ~~--~~g~yyl~ys~~~~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i 138 (294)
T cd08991 61 YY--YNGKFYMYYSANDRDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGNRVSDI 138 (294)
T ss_pred EE--ECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCCCcccce
Confidence 98 689999999987554456899999999999999986432 22345789999999999999999987532 358
Q ss_pred EEEEcCCCCCCccccEEEee---------------------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeC
Q 012300 307 HIGPLTSDYLDVSNVVRRIL---------------------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAE 364 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~---------------------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sd 364 (466)
.+++|+.|++++.++...+. .....|||+|+|++|+|||+||++.....+|.+.+ +|+
T Consensus 139 ~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~a~s~ 218 (294)
T cd08991 139 YGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDYGVGYATAD 218 (294)
T ss_pred EEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCceEEEEEcC
Confidence 99999999988765543211 12479999999999999999997655556676654 799
Q ss_pred CCCCCceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 365 SIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 365 s~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
+|+|||++. ++||+..+.. ....+.+|++|++.++..++|++||.+..+.+. ..|++ ..||.|++
T Consensus 219 ~~~gp~~~~~~~pl~~~~~~--~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~~~-~~R~~~~~~~~~~~ 285 (294)
T cd08991 219 SPLGPWTKYSNNPILRRNGD--KGVEGTGHNSVVKSPDGGELYIVYHAHNATDEV-EPRTMRIDPLYFKD 285 (294)
T ss_pred CCCCCcEecCCCceEeeCCC--CceEeCCCCceEECCCCCEEEEEEeeecCCCCC-CCceEEEEEEEEcC
Confidence 999999997 7898875421 123566666777765323688888876655433 56765 58999986
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=307.86 Aligned_cols=257 Identities=21% Similarity=0.224 Sum_probs=186.7
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccc-ccccCCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-THDLYKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~-~~~~~~~~~iWA 228 (466)
+|||+|++.+ ++||||+|.. ++.+++|+||++|+.++.+|...+..+ ..+......+||
T Consensus 1 ~~DP~v~~~~--~~yyl~~t~~------------------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wA 60 (288)
T cd08998 1 VHDPSIIKEG--DTYYLFSTGN------------------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWA 60 (288)
T ss_pred CCCCeEEEEC--CEEEEEEcCC------------------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccC
Confidence 4899999874 7999998842 589999999999999999987654200 011224567999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC-CCCceeccccCC-----CCCCccCceEEEcCCCcEEEEEEecC
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP-TGPFDYLYSKRP-----HGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP-~GPf~~~~~~~p-----~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
|+|++ .+|+|||||++........+|+||+|++| +|||++.+.... .+...|||+||+|+||+.||+|++..
T Consensus 61 P~v~~--~~g~yyl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~~ 138 (288)
T cd08998 61 PDVIY--LNGKYYLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSFW 138 (288)
T ss_pred CeEEE--ECCEEEEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeecc
Confidence 99998 69999999998754434678999999999 999998653211 23468999999999999999999753
Q ss_pred CCcEEEEEcCCCCCCccc---cEEEeec----CceeeeeEEEEECCEEEEEEeCCCCC---CCCcEEE-EEeCCCCCCce
Q 012300 303 NSELHIGPLTSDYLDVSN---VVRRILV----GQHREAPALFKHLGTYYMVTSGCTGW---APNEALV-HAAESIMGPWE 371 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g---~~~~i~~----g~~~EgP~ifK~~G~YYL~yS~~tg~---~~n~~v~-~~Sds~~GPw~ 371 (466)
+.+.+++|++|...... ..+.+.. ....|||+|+|++|+||||||.+... ..+|.+. ++|++|+|||+
T Consensus 139 -~~i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~ 217 (288)
T cd08998 139 -GGIFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYV 217 (288)
T ss_pred -CCEEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcC
Confidence 57999999998433222 2344443 34799999999999999999964322 3567665 58999999999
Q ss_pred eC-CCccccCCcc---c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 372 DM-GNPCIGGNKV---F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 372 ~~-gnPi~~~~~~---~--~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
.. ++|++..... + ...-.+.+|++++..++ .+|||+||.+..+. ...|. .+.||.|++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~g~GH~~~~~~~~-g~~~~~yH~~~~~~--~~~r~~~i~~l~w~~ 282 (288)
T cd08998 218 DRNGNDMLNGGGTLYLLSSNGGYVGPGHNSVFTDDD-GKDYLVYHYYDAND--GGDHELRIRQLFWNE 282 (288)
T ss_pred CCCCCchhhCCCcceeeccCCeEEcCCCCEEEECCC-CCEEEEEEEEeCCC--CCccEEEEEEEEECC
Confidence 75 7887643210 0 01223445556665444 27899998776652 33465 568999975
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=302.47 Aligned_cols=233 Identities=20% Similarity=0.306 Sum_probs=170.1
Q ss_pred eCCceEEECCCCEEEEEEEeCCCC-CccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccc-----c-cccCCC
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGP-TYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-----T-HDLYKL 223 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~-~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~-----~-~~~~~~ 223 (466)
|||.|++++ +|+|||++|..... .....+ ....+|.||+|+||+||+.++.|++..+... . ......
T Consensus 3 rDP~v~~~~-dg~Yy~~~T~~~~~~~~~~~~-----~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~ 76 (269)
T cd08986 3 RDTYVTLGP-DGYYYLTGTTPPPGLPFEDCS-----IVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYK 76 (269)
T ss_pred cCCeEEecC-CCcEEEEEccCCccccccccc-----cCCCceEEEeCccccCccccCcccccCCcccccccccccCCccc
Confidence 689999864 58999999975311 000000 1356899999999999999999987653211 0 011235
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCC
Q 012300 224 NVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 224 ~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
+.+|||+|++ .+|+|||||++...+....+|+||+|++|+|||++..... ....+|||++|+|+||+.||+|++.
T Consensus 77 ~~~WAP~v~~--~~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~~-~~~~~iD~~~f~D~DG~~Yl~~~~~-- 151 (269)
T cd08986 77 NAVWAPELHY--IKGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGNK-PLFPGIDPSLFEDDDGKVYLVWHNT-- 151 (269)
T ss_pred CCcCCceEEE--ECCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCCC-CCCCccCCceEEcCCCCEEEEeeCC--
Confidence 6799999998 7899999999875444467899999999999999864221 2246899999999999999999842
Q ss_pred CcEEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEeCCCCCCcee
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAAESIMGPWED 372 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~EgP~ifK~~G~YYL~yS~~t---g~~~n~~v~-~~Sds~~GPw~~ 372 (466)
.+++|++|++++.++...+.. +..+|||+|+|++|+||||||... +-..+|.+. ++|++|+|||+.
T Consensus 152 ---~i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~ 228 (269)
T cd08986 152 ---LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGA 228 (269)
T ss_pred ---ceEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccc
Confidence 468999999988887766643 247999999999999999998531 223456654 589999999999
Q ss_pred CCCccccCCccceeeccCCCceEEEc-ccCCcccEEEEE
Q 012300 373 MGNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMA 410 (466)
Q Consensus 373 ~gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~ 410 (466)
...++.+ .+ |+.+++ .+| +||++||
T Consensus 229 ~~~~~~g---------~G--h~~~v~~~~G--~~~~~~h 254 (269)
T cd08986 229 RYFAGRF---------LG--HNTPFQDLDG--RWWCTAF 254 (269)
T ss_pred cCccccc---------cC--CCceEECCCC--CEEEEEE
Confidence 8665422 22 334554 444 5777776
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08982 GH43_3 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=300.88 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=172.5
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
.+||+|++. +|+||+|+|... .||+|+||++|+.++.++. +..+|||
T Consensus 3 ~~DP~i~~~--~g~YY~~~T~~~-------------------~i~~S~DL~~W~~~g~~~~------------~~~~WAP 49 (295)
T cd08982 3 AADPVVILF--KGEYYLFASMSG-------------------GYWHSSDLIDWDFIPTNSL------------PDEGYAP 49 (295)
T ss_pred CCCCeEEEE--CCEEEEEEeCCC-------------------CeEECCCcCCceECCcccC------------CCCcCcC
Confidence 368999986 599999998521 2799999999999998753 2458999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC-ceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEE
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP-FDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHI 308 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GP-f~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i 308 (466)
+|++ .+|+||++++.. .++||+|++|+|| |+.. .......+|||+||+|+||+.||+|++..++.|++
T Consensus 50 ~i~~--~~g~~Y~~~~~~-------~~~v~~s~~p~gp~w~~~--~~~~~~~~IDp~vf~DdDGk~Yl~~g~~~~~~i~~ 118 (295)
T cd08982 50 AVFV--YDGTLYYTASTY-------NSRIYKTADPLSGPWEEV--DKSFPPGLADPALFIDDDGRLYLYYGCSNNYPLRG 118 (295)
T ss_pred EEEE--ECCEEEEEEeCC-------CceEEEeCCCCCCCcccc--ccccCCCccCCceEECCCCCEEEEEecCCCCCeEE
Confidence 9998 789988776542 3568999999976 5543 11234568999999999999999998754567999
Q ss_pred EEcCCCCCCccccEEEeec--------------------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCC
Q 012300 309 GPLTSDYLDVSNVVRRILV--------------------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIM 367 (466)
Q Consensus 309 ~~Ls~D~~~~~g~~~~i~~--------------------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~ 367 (466)
+||++|+.++.|+...++. ..+.|||+|+|+||+|||+||....+...|.+. ++|++|+
T Consensus 119 ~eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~ 198 (295)
T cd08982 119 VEVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWMEGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSPL 198 (295)
T ss_pred EEECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccccccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCCC
Confidence 9999999888777665431 237899999999999999999754445567665 4899999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEc-ccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|||+.. ++||+.... ....+.+|+++++ .+| +||++|| ++...+....|. .+.||.|++
T Consensus 199 GP~~~~~~~pil~~~~---~~~~g~GH~s~v~~~~G--~~~~~yh-~~~~~~~~~~R~~~i~pv~~~~ 260 (295)
T cd08982 199 GPFTYQPHNPFSYKPG---GFITGAGHGSTFQDKYG--NYWHVGT-MTVSVKHGFERRIGLFPAFFDE 260 (295)
T ss_pred CCCCcCCCCccccCCC---CeEecCCcccEEECCCC--CEEEEEE-EECCCCCCCCceeEEEEEEECC
Confidence 999987 578875321 1123344445554 555 6777776 565533333454 678999976
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=291.86 Aligned_cols=255 Identities=28% Similarity=0.383 Sum_probs=188.8
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC--CCcccccccCCCCeeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA--EETNETHDLYKLNVLER 228 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~--~~~~~~~~~~~~~~iWA 228 (466)
|||+|++. +|+||||+|.... ...++.+++|+||++|+.++.++.. .... ......+||
T Consensus 1 ~DP~v~~~--~~~yyl~~t~~~~-------------~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~----~~~~~~~wa 61 (271)
T cd08978 1 ADPYILRY--NGKYYLYGSTDDA-------------AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGE----AKDSGGLWA 61 (271)
T ss_pred CCCcEEEE--CCEEEEEEecCCc-------------CCCcEEEEECCccCCcEECCcccccccccCC----cccCCceeC
Confidence 58899986 4799999996431 1357999999999999999998752 1111 123567999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc--ccCCCCCCccCceEEEcCCCcEEEEEEecC----
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY--SKRPHGFDSRDMTIFKDDDGVAYLVYSSED---- 302 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~--~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~---- 302 (466)
|+|++ .+|+|||||++...+....+|+||+|++|.|||+... ...+.+...|||+||+|+||++||+|++..
T Consensus 62 P~v~~--~~g~yyl~y~~~~~~~~~~~i~~a~s~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~ 139 (271)
T cd08978 62 PEVIY--YEGKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAG 139 (271)
T ss_pred CeEEE--ECCEEEEEEEcccCCCCcccEEEEECCCCCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCC
Confidence 99998 6799999999875444467899999999999999642 122345678999999999999999999864
Q ss_pred CCcEEEEEcCCCCCCccccEEE----eecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeCCCc-
Q 012300 303 NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDMGNP- 376 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~----i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~gnP- 376 (466)
++.|.+++|++|++...++... .......|||.|+|++|+|||+||....+...|.+. ++|++++|||+..+.+
T Consensus 140 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~ 219 (271)
T cd08978 140 FGGIYISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNA 219 (271)
T ss_pred CCcEEEEEECcccccccCCceeeeeeccCCCceEccEEEEECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCc
Confidence 4689999999999887666432 123457999999999999999999765434456665 4899999999998542
Q ss_pred --cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 012300 377 --CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIV 430 (466)
Q Consensus 377 --i~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~ 430 (466)
+..... ....+.+|+.|++.++ .++|++||.+-......+++.++.||.|
T Consensus 220 ~~~~~~~~---~~~~~~gh~~~~~~~~-g~~~~~yh~~~~~~~~~~r~~~~~~~~~ 271 (271)
T cd08978 220 GLESDSAG---FVGVGLGHGSVVRDKN-GEWYLVYHAYNANSDNPNRKLVINPLVW 271 (271)
T ss_pred ceEeccCC---CccccCCCceEEECCC-CCEEEEEEeecCCCCCCCceEEEEeccC
Confidence 222111 3456777888887763 2788888755433233455568888865
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=281.32 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=180.9
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
.||+|++.+ ++||+++|... +++.+++|+||++|+..+.++......+ ....+.+|||+
T Consensus 1 ~DP~v~~~~--d~yY~~~T~~~----------------~~~~i~~S~dl~~w~~~~~~~~~~~~~~---~~~~~~~WAP~ 59 (288)
T cd08980 1 ADPWVIRHD--GYYYFTATTGE----------------DRIELRRSDTLAGLATAESKVVWTPPDS---GPYSGNLWAPE 59 (288)
T ss_pred CCCeEEEEC--CEEEEEEEeCC----------------CcEEEEecCChhHhhcCCcEEEecCCCC---CCccccEECce
Confidence 378999874 69999998521 4699999999999998764432211111 12346799999
Q ss_pred EEEEccCCEEEEEEEEeCC-CCCcceEEEEEeCC---CCCCceeccccC-CCCCCccCceEEEcCCCcEEEEEEecCC--
Q 012300 231 VIYNDRTGKYVMWMHIDDC-NYTKAAVGVAISDY---PTGPFDYLYSKR-PHGFDSRDMTIFKDDDGVAYLVYSSEDN-- 303 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~-~~~~~~IGVA~Sds---P~GPf~~~~~~~-p~g~~~iDp~vF~DdDG~~YL~~g~~~n-- 303 (466)
|++ .+|+|||||++... ....++|+||+|++ |+|||++.+... +.+..+|||++|+| ||+.||+|+++..
T Consensus 60 i~~--~~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~d-dG~~Yl~~~~~~~~~ 136 (288)
T cd08980 60 LHY--IDGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEH-NGQLYFVWSGWEGRT 136 (288)
T ss_pred EEE--ECCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEE-CCEEEEEEEccCCCC
Confidence 998 78999999998754 23467899999986 899999875432 33567899999997 4999999987642
Q ss_pred ---CcEEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeC---CCC
Q 012300 304 ---SELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAE---SIM 367 (466)
Q Consensus 304 ---~~i~i~~Ls~D~~~~~g~~~~i~~g---------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sd---s~~ 367 (466)
..|.+++|++++. +.|+...+... ...|||+|+|++|+|||+||.......+|.+.+ +++ .|+
T Consensus 137 ~~~~~i~~~~l~~~~~-~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~ 215 (288)
T cd08980 137 NGNQNLYIAKMSNPWT-LTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDYCLGLLTADGGADLL 215 (288)
T ss_pred CCCccEEEEECCCCCc-cCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCC
Confidence 5799999998764 34665555432 468999999999999999997654456777764 565 357
Q ss_pred CC--ceeCCCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 368 GP--WEDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 368 GP--w~~~gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
|| |++.++|++..+.. ..-.+.+|++|++. +| +++||+||.+-........|.+ ..||.|++
T Consensus 216 ~~~~~~~~~~pil~~~~~--~~~~g~GH~~iv~~~~G-~~~~~~yH~~~~~~~~~~~R~~~i~~v~~~~ 281 (288)
T cd08980 216 DPASWTKSPTPVFQSSPE--NGVYGPGHNSFTKSPDG-TEDWIVYHARPYPNGCGGNRHTRAQKVTWDA 281 (288)
T ss_pred ChhhCcCCCCCceecCCC--CccCcCCccceEECCCC-CEEEEEEccccCCCCCCCCceEEEEEEEECC
Confidence 77 77777888765431 12344555566654 44 2388888865543323445664 57999975
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=246.42 Aligned_cols=238 Identities=20% Similarity=0.223 Sum_probs=166.1
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC---CCcccccccCCCCeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA---EETNETHDLYKLNVLE 227 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~---~~~~~~~~~~~~~~iW 227 (466)
+||+|++. +|+||||.|..... ...++.+++|+||++|+.++.++.. ... ......+|
T Consensus 1 ~DP~i~~~--~g~yyl~~~~~~~~------------~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~-----~~~~~~~w 61 (286)
T cd08772 1 ADPNLIKY--NGTYYIFFSGDDKN------------GNPGIAHATSKDLVNWTDHPVALVWWARRGG-----PKDSGGIW 61 (286)
T ss_pred CCCeEEEE--CCEEEEEEEccCCC------------CCceEEEEECCCcCcceECCccchhhcccCC-----CCCCCcEe
Confidence 47888876 49999999965310 2457999999999999999988751 111 12356799
Q ss_pred eceEEEEccC-CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc--------CCCCCCccCceEEEcCCCcEEEEE
Q 012300 228 RPKVIYNDRT-GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--------RPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 228 AP~viyn~~~-GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--------~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
||+|++ .+ |+|||||++.......++|++|+|+++.+||+..... .......|||+||+|+||++||+|
T Consensus 62 ap~v~~--~~~g~~~l~yt~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~ 139 (286)
T cd08772 62 APSIVY--IENGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVF 139 (286)
T ss_pred cceEEE--cCCCCEEEEEEeecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEE
Confidence 999998 45 9999999987543346899999999999999965321 112356899999999889999999
Q ss_pred EecC---CCcEEEEEcCCCCCCccccEE-Ee---ecCceeeeeEEEEECCEEEEEEeCCCCC--CCCcEEEE-EeCCCCC
Q 012300 299 SSED---NSELHIGPLTSDYLDVSNVVR-RI---LVGQHREAPALFKHLGTYYMVTSGCTGW--APNEALVH-AAESIMG 368 (466)
Q Consensus 299 g~~~---n~~i~i~~Ls~D~~~~~g~~~-~i---~~g~~~EgP~ifK~~G~YYL~yS~~tg~--~~n~~v~~-~Sds~~G 368 (466)
++.. .+.|.++++++++........ .+ ..+...|||.|||++|+|||+||...+. ...|.+++ +|++++|
T Consensus 140 ~~~~~~~~~~i~~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g 219 (286)
T cd08772 140 GSGDHHNFGGIFLYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSESDTG 219 (286)
T ss_pred ccccCCCCCeEEEEEcCCCCCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccCCCC
Confidence 9753 457999998877654333322 11 1246899999999999999999965432 33466654 7999999
Q ss_pred CceeCC-Cccc--cCCccceeeccCCCceEEEcccCCcccEEEEEeE
Q 012300 369 PWEDMG-NPCI--GGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADR 412 (466)
Q Consensus 369 Pw~~~g-nPi~--~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~ 412 (466)
||+... ++.. ..... ....+..|+.++..++ .++||++|-+
T Consensus 220 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~ 263 (286)
T cd08772 220 PYVPKSDTSGGLSLTGGN--DGGVGPYHAAAFNDAG-GRVVLVYHAY 263 (286)
T ss_pred CcccCCCCCCcccccccc--CCCCCCCccEEEECCC-CCEEEEEEec
Confidence 999873 3211 10000 1223344445554332 2678877743
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=252.62 Aligned_cols=257 Identities=18% Similarity=0.158 Sum_probs=180.5
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCC-cc-ccccccceeccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPT-YH-AHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVL 226 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~-~~-~~~~g~~~~~~~gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~i 226 (466)
++||.|++++++++||||.|+..... .. .+| .....|.+++|+| |++|+.++.++... ..| ....+
T Consensus 11 ~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w-----~~~~~i~~a~S~D~l~~W~~~g~~~~~~-~~~-----~~~~~ 79 (294)
T cd08984 11 AADPTIIYNRETKEWWMFYTNRRANVPTPGVAW-----VHGTDIGVASSKDGGATWTYRGTADGLE-FEC-----GRNTF 79 (294)
T ss_pred CCCCEEEEeCCCCEEEEEEccccCcCCCCCccc-----CcCceEEEEEeCCCCCCCEEeeeeccCC-CCC-----cccce
Confidence 47899999988899999999654211 10 122 1235799999999 99999999876542 222 34568
Q ss_pred eeceEEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 227 ERPKVIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 227 WAP~viyn~~~GkYyly~s~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
|||+|++ .+|+|||||++.... ....+|++|+|++. ++|+..+.....+...|||+||+++||++||+|++..
T Consensus 80 WAP~v~~--~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~~ 156 (294)
T cd08984 80 WAPEVVW--HGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-WDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDER 156 (294)
T ss_pred eCceEEE--ECCEEEEEEEecCCCCcccCCCcEEEEEECCCc-CcceECCccccCCCCcEEeEEEEeCCCEEEEEEECCC
Confidence 9999998 789999999986431 23578999999994 7899765432234568999999988899999998654
Q ss_pred CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCCCccccCCc
Q 012300 303 NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNK 382 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~gnPi~~~~~ 382 (466)
++......+++|+.+++..... +.....|||.|||++|+|||+++... ...+++|+++. +|++.+.++.....
T Consensus 157 ~~~~~~~a~s~D~~~w~~~~~~-i~~~~~EgP~v~k~~g~yym~~~~~~-----g~~~~~S~D~~-~W~~~~~~l~~~~~ 229 (294)
T cd08984 157 RGSTTYAADSEDLYHWTVEGPV-LGDRPHEGPNVFRWKGYYWMIIDEWK-----GLGVYRSKDAE-NWERQGGILLKPGT 229 (294)
T ss_pred CCeEEEEEECCCCCEEEeCCcc-ccCCCCCCCCeeEECCEEEEEEcCCc-----eEEEEECCChh-hcEECCeeeccCCC
Confidence 3333345578888887653322 22346799999999999999986421 23456899999 99999877664211
Q ss_pred cceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC----------CCCeeEE-EEEEE
Q 012300 383 VFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL----------RESRYIW-LPLIV 430 (466)
Q Consensus 383 ~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~----------~~~R~v~-lPl~~ 430 (466)
.. .....++|..|++.+| +|||+||.+-.++.. ..+|+|+ ..|.+
T Consensus 230 ~~-~~~~~~~H~~i~~~~~--~~y~~Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (294)
T cd08984 230 RP-DDGAKGRHADVVVTGD--RAYIFYFTHPGREYEAEDDAADPYRYRRSSIQVAELEV 285 (294)
T ss_pred Cc-cccccccCCcEEEeCC--EEEEEEEecCCCcccccccccCchhheeeeEEEEEEEE
Confidence 00 1122336677887776 799999987665321 2344666 56877
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=248.69 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=163.4
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccccc-
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL- 220 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~- 220 (466)
-|||.+ .|++|+++ +..|||-.+. +..++|+.++.|+||+||+.....|........+..
T Consensus 22 ~NPvl~gf~PDpSi~rv--g~dyYia~st--------------F~~fpGl~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~ 85 (549)
T COG3507 22 LNPVLAGFNPDPSIVRV--GDDYYIATST--------------FEWFPGLAIHHSRDLVNWTLVSTPLIRTSQLDLKGNF 85 (549)
T ss_pred cCccccccCCCCceEec--CCceEEEcce--------------EEEcCceeeeccccccCcEEecccccCcchhhhhccc
Confidence 366665 68999986 5778887552 246889999999999999999987776554333332
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeC---CCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEE
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDD---CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~---~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
..++.+|||+|.| ++|||||||+-.. ..+......+.++++++|||++... -.+.++|||++|.|+||+.||+
T Consensus 86 ~~S~giWAPdl~y--~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDpi~--l~~~~~iDPslf~D~dGr~wlv 161 (549)
T COG3507 86 PYSGGIWAPDLSY--HDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIK--LNGSNAIDPSLFFDKDGRKWLV 161 (549)
T ss_pred CCCCceeccceec--CCCcEEEEEecccccCCcccccccEEEEecCCCCCccccee--cCCcCccCCceeecCCCCEEEE
Confidence 3578899999998 9999999994321 2345677889999999999998642 2234689999999999999999
Q ss_pred EEecCCC-------cEEEEEcCCCCCCcccc-EEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCc-EEEEEeCC
Q 012300 298 YSSEDNS-------ELHIGPLTSDYLDVSNV-VRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNE-ALVHAAES 365 (466)
Q Consensus 298 ~g~~~n~-------~i~i~~Ls~D~~~~~g~-~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~-~v~~~Sds 365 (466)
++++..+ .|.+.+.++-...+.|. ...++.| ...|||.++|++|+|||+.+.+.+-...+ .+++||++
T Consensus 162 ~~~w~~~~~~~~~~~i~l~~~~~~~~~l~g~~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~gG~t~~gh~~~vaRSKs 241 (549)
T COG3507 162 NGSWDGGIFMHSFAGIILQEYDKTTQKLVGQGYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSKS 241 (549)
T ss_pred ecccCCCcccccccceeeeeccccccccCCccceeEeccCCCccccCceeeccCCEEEEEEEcCCCCccceeEEEEeccC
Confidence 9998644 46677776666666776 4445543 47999999999999999998543211123 34569999
Q ss_pred CCCCceeC-CCcccc
Q 012300 366 IMGPWEDM-GNPCIG 379 (466)
Q Consensus 366 ~~GPw~~~-gnPi~~ 379 (466)
|.|||+.. ++|++.
T Consensus 242 idGPYe~~~~~pllt 256 (549)
T COG3507 242 IDGPYEDHPGNPLLT 256 (549)
T ss_pred CCCCcccCCCCeeee
Confidence 99999988 889885
|
|
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=222.94 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=151.8
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
+||.|++.+++|+|||++|+..... +.....+|.+|+|+||++|+..+.++.... ....+|||+
T Consensus 19 rDP~I~r~~~~g~yy~~~T~~~~~~--------~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--------~~~~~WAPe 82 (276)
T cd08983 19 RDPFILRSHEGGKYYMIATDLKITG--------QTNGSQYIVVWESTDLVNWTFQRLVKVNPP--------NAGNTWAPE 82 (276)
T ss_pred cCCeEEEcCCCCEEEEEEEecCcCC--------cccCCCeEEEEECCcccCCcccceeecCCC--------CcCcEeCcc
Confidence 6999999866899999999864211 012356899999999999999998863211 235689999
Q ss_pred EEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 231 VIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
|+|++.+|+|||||++...+ ....+|+++++.++ ..|+........+...||+++|+|+ |++||+|+.+.+..|
T Consensus 83 v~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~Df-~tft~p~~~~~~~~~~ID~~v~~~~-g~~Yl~~k~~~~~~i 160 (276)
T cd08983 83 AFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSDF-VTFTEPKVWIDLGANVIDTTVVKVG-GTYYRFYKNEGSKDI 160 (276)
T ss_pred ceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCcc-cccCCCeEeecCCCCeEeeEEEEeC-CEEEEEEecCCCCcE
Confidence 99988899999999987542 33567777777444 4677544333356789999999975 999999998765678
Q ss_pred EEEEcCCCCCCccccEEEee-----cCceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEeCCC-CCCceeCCCccc
Q 012300 307 HIGPLTSDYLDVSNVVRRIL-----VGQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESI-MGPWEDMGNPCI 378 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~-----~g~~~EgP~ifK~~G--~YYL~yS~~tg~~~n~~v~~~Sds~-~GPw~~~gnPi~ 378 (466)
.+++.+. +.|....+. .+...|||.|||.++ +|||+++...+ ..|.. ..++++ .|.|+.....-
T Consensus 161 ~~~~s~~----l~g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~--~~Y~~-~~t~d~~~~~~~~~~~~~- 232 (276)
T cd08983 161 ELARSKS----LTGPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNYSG--GGYYP-FDTSDLASTSWTKVALYG- 232 (276)
T ss_pred EEEEeCC----CCCCceEecccccCCCCceeCCeEEEECCCCEEEEEEEECCC--CCeEE-EEecCcCCCceecccccC-
Confidence 7777543 345444332 235799999999987 99999997542 22322 345555 56676432211
Q ss_pred cCCccceeeccCCCceEEEcccC
Q 012300 379 GGNKVFRLTTFFAQSTYVIPLAG 401 (466)
Q Consensus 379 ~~~~~~~~~t~~sq~~~v~~~~G 401 (466)
......|+.|+++.-
T Consensus 233 --------~~~~~rHg~v~~it~ 247 (276)
T cd08983 233 --------LPGNPRHGTVVPITA 247 (276)
T ss_pred --------CCCCCCcceEecCCH
Confidence 223456778999864
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=211.25 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=147.7
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCC-CcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE-ETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~-~~~~~~~~~~~~~iWAP 229 (466)
-||.|++. +|+||+|+|..+.. ....+|+| |++|+.++.|+... .... ....+|||
T Consensus 25 kDPtiv~~--nGkYyvYgT~~~~~--------------~~~s~~~S--f~~Ws~~g~A~q~~l~~~~-----~~~~fwAP 81 (303)
T cd08987 25 KDPTVVYY--NGRYHVYATTADAG--------------NYGSMYFN--FTDWSQAASATQYYLQNGN-----MTGYRVAP 81 (303)
T ss_pred cCCeEEEE--CCEEEEEEccCCCC--------------Cceeeeec--ccCHhHhccchhhcccCCC-----CCcccccC
Confidence 46788875 49999999975421 12467888 99999999776411 0000 13458999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+|+|-+.+++|||+|... .+.+++|++|+||+....... ..+...||+.| ++||+++||++.+.
T Consensus 82 qVfyf~pk~kwYL~Yq~~-------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLff~~d- 152 (303)
T cd08987 82 QVFYFAPQNKWYLIYQWW-------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLFFSDD- 152 (303)
T ss_pred EEeeeccCCEEEEEEecC-------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEEEecC-
Confidence 999877889999999962 367999999999988432111 11235799999 68899999999865
Q ss_pred CCcEEEEEcCCC-CCCccccEEEeec----CceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC--
Q 012300 303 NSELHIGPLTSD-YLDVSNVVRRILV----GQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-- 373 (466)
Q Consensus 303 n~~i~i~~Ls~D-~~~~~g~~~~i~~----g~~~EgP~ifK~~G--~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~-- 373 (466)
|+.|+.++|+.+ .-...++...+.. ...+|||.|+|.+| +|||++++.......|.+.++|+||.|||++.
T Consensus 153 nG~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs~Ts~Sl~GpWt~~a~ 232 (303)
T cd08987 153 NGKLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRSWTATSLDGPWTPLAT 232 (303)
T ss_pred CCeEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEEEEcCCCCCCceeccc
Confidence 679999999876 5444444444432 46899999999988 99999997643345677778999999999998
Q ss_pred --CCccccCC
Q 012300 374 --GNPCIGGN 381 (466)
Q Consensus 374 --gnPi~~~~ 381 (466)
.||+.+.+
T Consensus 233 ~e~nPfag~~ 242 (303)
T cd08987 233 TESNPFAGAN 242 (303)
T ss_pred ccCCCccccc
Confidence 47888763
|
The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=185.71 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=139.5
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
|+..++. +|+||||.+...... .| ......+.+++|+||+||+.++.+|...+.. .....+|+|++
T Consensus 2 d~~~~~~--~G~yhlfyq~~p~~~---~~----~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~-----~d~~g~~sgs~ 67 (280)
T cd08995 2 DPMPFYD--DGTFHIFYLHDPRNG---PP----EGLRHPWSLLTTKDLVNYEDHGEAIPRGGDE-----DDDDAIGTGSV 67 (280)
T ss_pred CccceEE--CCEEEEEEEcCCCCC---Cc----ccCCceEEEEEccCcCccEECcceecCCCCc-----ccccCceEeEE
Confidence 4556665 489999998754211 11 0134568999999999999999998764322 13467999999
Q ss_pred EEEccCCEEEEEEEEeCCC-CCcceEEEEEeCCCCCCceeccc--cC--CCC---CCccCceEEEcC-CCcEEEEEEecC
Q 012300 232 IYNDRTGKYVMWMHIDDCN-YTKAAVGVAISDYPTGPFDYLYS--KR--PHG---FDSRDMTIFKDD-DGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~-~~~~~IGVA~SdsP~GPf~~~~~--~~--p~g---~~~iDp~vF~Dd-DG~~YL~~g~~~ 302 (466)
+. .+|+|||||++.... ...++|++|+|+++ .+|+.... .. +.+ ...+||.||.|+ +|++||++++..
T Consensus 68 ~~--~~g~~~l~YTg~~~~~~~~~~i~~A~S~D~-~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~ 144 (280)
T cd08995 68 IK--GEGTYHAFYTGHNLDGKPKQVVMHATSDDL-ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRL 144 (280)
T ss_pred Ee--eCCEEEEEEEEECCCCCCcEEEEEEECCCC-CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEecc
Confidence 97 679999999986432 23578999999997 68886532 11 222 347899999985 799999998642
Q ss_pred -----CCcEEEEEc-CCCCCCcccc--EEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC
Q 012300 303 -----NSELHIGPL-TSDYLDVSNV--VRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 373 (466)
Q Consensus 303 -----n~~i~i~~L-s~D~~~~~g~--~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~ 373 (466)
+....|..+ ++|+.+++-. ......+...|+|.||+.+|+|||+||... ......+++++++.|||+..
T Consensus 145 ~~~~~~~~g~i~~~~S~Dl~~W~~~~~~~~~~~~~~~E~P~l~~~~g~~~L~~s~~~--~~~~~~Y~~~~~~~g~~~~~ 221 (280)
T cd08995 145 LDGPYNRRGCIALFTSKDLKNWEYEEPFYAPGLYFMPECPDLFKMGDWWYLVYSEFS--ENRKTHYRVSKSPFGPWRAP 221 (280)
T ss_pred CCCCCCCCeEEEEEEeCCcCcceecCceecCCCcceeecceEEEECCEEEEEEEecc--CCCcEEEEEeCCCCCCeEcC
Confidence 122233333 6788776532 111112346899999999999999999653 22233444788999999765
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=189.79 Aligned_cols=203 Identities=21% Similarity=0.315 Sum_probs=129.5
Q ss_pred CeEEeeCCc-eEEECCCCEEEEEEEeCCCCC--ccccccccce--eccCcEEEEEeCCCCCCEEeceeccCCCccccccc
Q 012300 146 APIQAHGGG-ILYDERSRTYFWYGEYKDGPT--YHAHKKAAAR--VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL 220 (466)
Q Consensus 146 npI~ahd~~-Ii~~~~~g~YYlygT~~~~~~--~~~~~~g~~~--~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~ 220 (466)
.+|...||+ |++. +|+|||+.|.....+ +..+...... .....|.+++|+||++|+.++.+|...+.. .
T Consensus 33 ~~i~r~dP~~Vi~~--~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~~g----~ 106 (349)
T cd08992 33 EGVHRRDPSSVIKV--DGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGEKG----A 106 (349)
T ss_pred cCeecCCCceEEEE--CCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCCCC----C
Confidence 345566774 8875 599999877542100 0000000000 013457789999999999999888654321 1
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEE
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
++...+|||+|++ .+|+|||||++.... ....+||||+|++|.|||++... |.-...-|...+.|+||
T Consensus 107 Wd~~~vwaP~Vi~--~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~--Pil~p~~dg~w~~d~~~----- 177 (349)
T cd08992 107 YDDRSVFTPEVLE--HEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDE--PILSPSNDGIWKGDEDN----- 177 (349)
T ss_pred ccccceECcEEEE--ECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCC--cEecCCcCCceeeccCc-----
Confidence 2467799999996 899999999864321 12468999999999999997532 21001123334444333
Q ss_pred EEecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC-C----C-CCCcEEE-EEeCCCCCCc
Q 012300 298 YSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT-G----W-APNEALV-HAAESIMGPW 370 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t-g----~-~~n~~v~-~~Sds~~GPw 370 (466)
..++++..++.+ ..+|+|.|++++|+|||+|++.. + + ..++.++ ++|++|+|||
T Consensus 178 --------~~~~~~~g~wD~-----------~~v~~P~v~~~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf 238 (349)
T cd08992 178 --------RFLVKKKGSFDS-----------HKVHDPCLFPFNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPY 238 (349)
T ss_pred --------eeEeccCCCccc-----------CceECCEEEEECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCC
Confidence 123333333332 24799999999999999998753 1 1 1245565 4799999999
Q ss_pred eeC-CCccccCCc
Q 012300 371 EDM-GNPCIGGNK 382 (466)
Q Consensus 371 ~~~-gnPi~~~~~ 382 (466)
++. .|||+....
T Consensus 239 ~r~~~nPi~~~~~ 251 (349)
T cd08992 239 VKSPYNPITNSGH 251 (349)
T ss_pred EeCCCCcccCCCC
Confidence 987 689887543
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=186.81 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=140.1
Q ss_pred eccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEE
Q 012300 186 VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAI 260 (466)
Q Consensus 186 ~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~ 260 (466)
.....|.++.|+||++|++.+.+++.. ..+...+|+++++. ..+|+++|||++... ....++|++|+
T Consensus 38 h~~~~wgh~~S~dlv~W~~~~~l~p~~-------~~d~~g~wSGsa~~-~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~ 109 (349)
T cd08997 38 HGDARIGYFYSRAGGNWIDGGKVFPDG-------LSPGSREWSGSATL-DDDGTVQLFYTAVGRKGEPQPTFTQRLALAR 109 (349)
T ss_pred cCceEEEEEEeCCCCcccCCCccCCCC-------cccCCCeEcceEEE-eCCCeEEEEEeccccCCCCCCCceEEEEEEE
Confidence 345679999999999999988777632 22467899999998 346999999998632 12457788888
Q ss_pred eCCC----CCC------ceeccc------------cCCCCCCccCceEEEcC-CCcEEEEEEecCC--------------
Q 012300 261 SDYP----TGP------FDYLYS------------KRPHGFDSRDMTIFKDD-DGVAYLVYSSEDN-------------- 303 (466)
Q Consensus 261 SdsP----~GP------f~~~~~------------~~p~g~~~iDp~vF~Dd-DG~~YL~~g~~~n-------------- 303 (466)
++.. .+. |+..+. ........+||.||+|+ +|+.||++.+...
T Consensus 110 ~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~ 189 (349)
T cd08997 110 GTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELG 189 (349)
T ss_pred CCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccc
Confidence 7752 111 111110 00112468999999996 8999999998521
Q ss_pred ----------------CcEEEEEcCC-CCCCcc--ccEEE-eecCceeeeeEEEEECCEEEEEEe-CCCCCCCC-----c
Q 012300 304 ----------------SELHIGPLTS-DYLDVS--NVVRR-ILVGQHREAPALFKHLGTYYMVTS-GCTGWAPN-----E 357 (466)
Q Consensus 304 ----------------~~i~i~~Ls~-D~~~~~--g~~~~-i~~g~~~EgP~ifK~~G~YYL~yS-~~tg~~~n-----~ 357 (466)
+.|.++++++ |+..++ ++... .....+.|+|.|||++|+||||+| .++++.++ +
T Consensus 190 ~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~ 269 (349)
T cd08997 190 RVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDG 269 (349)
T ss_pred ccccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCc
Confidence 2355666643 444322 11100 011347999999999999999999 45556653 5
Q ss_pred EEEEEeCCCCCCceeC-CCccccCCccceeeccCCCceEEEc
Q 012300 358 ALVHAAESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP 398 (466)
Q Consensus 358 ~v~~~Sds~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~ 398 (466)
..+++|++++|||+.. +.+++.+++. ..++.+|+++|++
T Consensus 270 ~~g~vsdsl~GP~~~~n~sglvl~~p~--~~~~~~ys~~~~p 309 (349)
T cd08997 270 LYGFVSDSLRGPYKPLNGSGLVLGNPT--DAPFQTYSWYVMP 309 (349)
T ss_pred EEEEEeCCCCCCCccCCCCcceeCCCC--CCccccceEEEEC
Confidence 6677999999999997 5666555553 4689999999998
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=173.99 Aligned_cols=213 Identities=15% Similarity=0.191 Sum_probs=141.3
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCC-CCEEeceeccCCCcccccccCCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMW-TWKNEGIVLAAEETNETHDLYKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv-~W~~~g~vL~~~~~~~~~~~~~~~~iWA 228 (466)
..++.|++++ +|+||||.|......-..+| .....|.+..|+|+. +|+..+.||...... .++...+|+
T Consensus 13 ~w~~~vi~~~-~g~y~lfy~~~~~~~~~~~~-----~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~----~wd~~~~~~ 82 (291)
T cd08994 13 VWGGSIIKGP-DGKYHLFASRWPEGLGFHGW-----LPYSEIVHAVSDTPEGPYTFQEVVLPGRGGG----YWDARTTHN 82 (291)
T ss_pred EEecceEECC-CCcEEEEEEEccCCCCCCcc-----cccceEEEEEcCCCCCCcEEeeeEcCCCCCC----cccCCCccC
Confidence 5788999875 58999999863311001111 112358899999975 899999999765422 124567999
Q ss_pred ceEEEEccCCEEEEEEEEeCC------CCCcceEEEEEeCCCCCCceec-ccc-CC--C---CCCccCceEEEcCCCcEE
Q 012300 229 PKVIYNDRTGKYVMWMHIDDC------NYTKAAVGVAISDYPTGPFDYL-YSK-RP--H---GFDSRDMTIFKDDDGVAY 295 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~------~~~~~~IGVA~SdsP~GPf~~~-~~~-~p--~---g~~~iDp~vF~DdDG~~Y 295 (466)
|+|++ .+|+|||||++... ....++||+|+|++|.|||+.. ... .+ . ....+||+|++++||++|
T Consensus 83 P~vi~--~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~ 160 (291)
T cd08994 83 PTIKR--FDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYL 160 (291)
T ss_pred CeEEE--ECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEE
Confidence 99997 67999999997542 2246789999999999999984 221 11 1 134689999998789999
Q ss_pred EEEEecCC------CcEEEEEcCCCC-CCccccEEEe----ecCceeeeeEEEEECCEEEEEEeCCCCCC--CCcEEE-E
Q 012300 296 LVYSSEDN------SELHIGPLTSDY-LDVSNVVRRI----LVGQHREAPALFKHLGTYYMVTSGCTGWA--PNEALV-H 361 (466)
Q Consensus 296 L~~g~~~n------~~i~i~~Ls~D~-~~~~g~~~~i----~~g~~~EgP~ifK~~G~YYL~yS~~tg~~--~n~~v~-~ 361 (466)
|+|.+... ..+.++. ++|. ..++-....+ ......|.|.|+|++|+|||+|+...++. ..+.+. +
T Consensus 161 m~y~g~~~~~~~~~~~~gla~-s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a 239 (291)
T cd08994 161 LVYKGGTYNPTKGNRKYGVAI-ADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYF 239 (291)
T ss_pred EEEeccccCCCCCcEEEEEEE-eCCCCCCCEECCCCccccCCCCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEE
Confidence 99987521 1233443 3443 2232110011 12357999999999999999998765441 223443 4
Q ss_pred EeCCCCCCceeCCCc
Q 012300 362 AAESIMGPWEDMGNP 376 (466)
Q Consensus 362 ~Sds~~GPw~~~gnP 376 (466)
+|++.. .|+..+.+
T Consensus 240 ~S~Dg~-~W~~~~~~ 253 (291)
T cd08994 240 RSKDGI-HWKLAPGL 253 (291)
T ss_pred ECCCCC-CceecCcc
Confidence 566544 79988644
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >COG3940 Predicted beta-xylosidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=160.01 Aligned_cols=271 Identities=16% Similarity=0.219 Sum_probs=179.8
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe--ceeccCCCcccccccCCCCeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE--GIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~--g~vL~~~~~~~~~~~~~~~~iW 227 (466)
.-||-|.+. .+|.||..++-. .| ..|.+-..+-|..-... -+|....+... -++.+|
T Consensus 13 radp~iykh-~dg~yyftasvp---ey------------drie~rraktleglr~aepvvvwrk~esgp-----ms~liw 71 (324)
T COG3940 13 RADPMIYKH-NDGYYYFTASVP---EY------------DRIEVRRAKTLEGLRNAEPVVVWRKHESGP-----MSNLIW 71 (324)
T ss_pred ccCceEEEc-cCccEEEEeccC---cc------------ceeeeeeccchhhhhccCceeEEeccCCCc-----hhhccc
Confidence 357777765 467777776532 11 23445454444333221 12222222211 256799
Q ss_pred eceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCC--C-CCCceecccc-CCCCCCccCceEEEcCCCcEEEEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDY--P-TGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~Sds--P-~GPf~~~~~~-~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
||++++ .+|+||+||++... +....++.|....+ | +|.|...+.. .+....++|.+.|. ..|+.|++|
T Consensus 72 apeih~--ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattfe-h~gk~yyvw 148 (324)
T COG3940 72 APEIHF--INGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTFE-HNGKLYYVW 148 (324)
T ss_pred ccceeE--EcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeeee-eCCEEEEEE
Confidence 999998 99999999987642 12357788877554 3 5888876643 34456789999996 689999999
Q ss_pred Eec-----CCCcEEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE---
Q 012300 299 SSE-----DNSELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH--- 361 (466)
Q Consensus 299 g~~-----~n~~i~i~~Ls~D~~~~~g~~~~i~~g---------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~--- 361 (466)
... +|.+|+|++|...++ ++|++..+..+ -..|||+|+|++|+-++.||.... ..||+++.
T Consensus 149 aqkdp~i~gnsniyiaemenpwt-ikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasat-d~nycmgllwa 226 (324)
T COG3940 149 AQKDPNIKGNSNIYIAEMENPWT-IKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASAT-DVNYCMGLLWA 226 (324)
T ss_pred eccCCCccCCcceEEEeccCCce-ecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEecccc-ccceeeeeeee
Confidence 863 367899999977764 67877665432 258999999999999999997543 45787764
Q ss_pred -EeCCCCCC--ceeCCCccccCCccceeeccCCCc-eEEEcccCCcccEEEEEeEe-CC--CC--CCCCee-EEEEEEEc
Q 012300 362 -AAESIMGP--WEDMGNPCIGGNKVFRLTTFFAQS-TYVIPLAGLPGLYIFMADRW-NP--AD--LRESRY-IWLPLIVR 431 (466)
Q Consensus 362 -~Sds~~GP--w~~~gnPi~~~~~~~~~~t~~sq~-~~v~~~~G~~~~yi~~~d~w-~~--~~--~~~~R~-v~lPl~~~ 431 (466)
..++++-| |++...|+....-+ +.-||.+| +|.++.+|+.+ .|+||.|- .. ++ -...|. ...-+.|+
T Consensus 227 nen~dlldpaswtksptpvf~ts~e--n~qygpghnsftvtedgkhd-vlvyharnyteiegdplydpnrhtrlk~~~wd 303 (324)
T COG3940 227 NENSDLLDPASWTKSPTPVFKTSME--NHQYGPGHNSFTVTEDGKHD-VLVYHARNYTEIEGDPLYDPNRHTRLKIINWD 303 (324)
T ss_pred cccCCcCCchhcccCCCcceeeehh--ccccCCCCCceEecCCCccc-EEEEeccccccccCCcCcCCCccceeEEEeec
Confidence 24567766 99998898876433 44555554 57778788544 56666543 22 11 245565 45567898
Q ss_pred CCCCCCCccccCCCccceeeEE
Q 012300 432 GPADRPLEYNFGFPLWSRVSIY 453 (466)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~ 453 (466)
+ |+ +++||.|+=..+.|.
T Consensus 304 e--dg--~pdfgvp~~dt~~~e 321 (324)
T COG3940 304 E--DG--TPDFGVPEVDTLEIE 321 (324)
T ss_pred c--CC--CCCCCCCCCceeeeE
Confidence 8 77 999999986666654
|
|
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=153.25 Aligned_cols=192 Identities=17% Similarity=0.207 Sum_probs=130.2
Q ss_pred CEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceecc-CCCcccccccCCCCeeeeceEEEEccC-CE
Q 012300 162 RTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLA-AEETNETHDLYKLNVLERPKVIYNDRT-GK 239 (466)
Q Consensus 162 g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~-~~~~~~~~~~~~~~~iWAP~viyn~~~-Gk 239 (466)
|+|+||.+...... .+ .....+++++|+||++|+..+.++. ..... .+...+|+|+|++ .+ |+
T Consensus 14 g~yhlfy~~~~~~~---~~-----~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~-----~~~~~~~~p~v~~--~~dg~ 78 (276)
T cd08979 14 GKYHLFYLAAPRGG---GD-----GNTSRIGAASSDDGTWWTRPPAPLPPGPPGS-----FDDGGVWTPSVVR--DPDGT 78 (276)
T ss_pred eeEEEEEEccCcCc---CC-----CCcceeEEEEcCCCCccEECCcCccCCCCCc-----hhcCCeEcceEEE--cCCCe
Confidence 78999988643211 00 1134578999999999999998872 22221 2457799999998 45 99
Q ss_pred EEEEEEEeCC-CCCcceEEEEEeCCCCCCceeccccC------------CCCCCccCceEEEcCC-CcEEEEEEecC---
Q 012300 240 YVMWMHIDDC-NYTKAAVGVAISDYPTGPFDYLYSKR------------PHGFDSRDMTIFKDDD-GVAYLVYSSED--- 302 (466)
Q Consensus 240 Yyly~s~~~~-~~~~~~IGVA~SdsP~GPf~~~~~~~------------p~g~~~iDp~vF~DdD-G~~YL~~g~~~--- 302 (466)
|+|||++... ....++|++|+|++... |+...... ......+||.||.+++ |++||+|++..
T Consensus 79 ~~~~Yt~~~~~~~~~~~i~~A~S~D~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~ 157 (276)
T cd08979 79 YRMFYTGYDRPKGAVQRIGLATSKDLIH-WTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADE 157 (276)
T ss_pred EEEEEecccCCCCCcceEEEEECCCCCc-eEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCC
Confidence 9999997642 22457899999999764 66543211 1224679999999876 89999999753
Q ss_pred CCcEEEEEcCCCCCCccccEEE--ee---cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCcee
Q 012300 303 NSELHIGPLTSDYLDVSNVVRR--IL---VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 372 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~--i~---~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~ 372 (466)
.+.|.+++ ++|+.+++..... +. .....|+|.+++.+|+|||+|+... ......+..+..+.++++.
T Consensus 158 ~~~i~~a~-S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~~~~--~~~~~~y~vg~~~~~~~~~ 229 (276)
T cd08979 158 RGAIGLAT-SPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYSGRN--EDAKTGYRVGTALFGPGRP 229 (276)
T ss_pred CcEEEEEE-CCCCCcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEEecC--ccCCccEEEEecccCCccc
Confidence 25566665 7888776532111 11 2357899999999999999999643 1122334456666677654
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=152.15 Aligned_cols=179 Identities=19% Similarity=0.212 Sum_probs=128.1
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+||||.+...... .| ....+.+++|+||+||+.++.+|.+.. ..+...+|++++
T Consensus 6 Png~~~~--~G~yhlfyq~~p~~~---~~------~~~~wgha~S~Dlv~W~~~~~al~p~~------~~d~~g~~sGsa 68 (298)
T cd08996 6 PNGLVYF--NGKYHLFYQYNPFGP---VW------GNMHWGHATSKDLVHWEHLPVALAPDD------PYDSGGCFSGSA 68 (298)
T ss_pred CCeeeEE--CCEEEEEEcCCCCCC---CC------CCcEEEEEEecCccceeECCcccCCCC------cccCCeEEeCeE
Confidence 3457775 489999988653211 11 235688999999999999999987522 124567999999
Q ss_pred EEEccC-CEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceeccccC----C--CCCCccCceEEEcCCCcEEEEEEecC
Q 012300 232 IYNDRT-GKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSKR----P--HGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~-GkYyly~s~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~~----p--~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+. .+ |+|+|||++.... ...+.+++|+|++....|+...... + .....+||.||.++ |++||++++..
T Consensus 69 v~--~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~-g~~~m~~g~~~ 145 (298)
T cd08996 69 VV--DDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD-GKWYMVLGAGT 145 (298)
T ss_pred EE--cCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC-CEEEEEEEEEe
Confidence 97 44 8999999976431 2467899999997677898754221 1 12467999999975 89999999853
Q ss_pred ---CCcEEEEEcCCCCCCccccEEE----eecCceeeeeEEEEEC--CEEEEEEeCCC
Q 012300 303 ---NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHL--GTYYMVTSGCT 351 (466)
Q Consensus 303 ---n~~i~i~~Ls~D~~~~~g~~~~----i~~g~~~EgP~ifK~~--G~YYL~yS~~t 351 (466)
.+.+.+.+ ++|+.+++-.... ...+...|+|.+|+.+ |+|||++|...
T Consensus 146 ~~~~~~i~ly~-S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~~ 202 (298)
T cd08996 146 EDGTGRILLYR-SDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQG 202 (298)
T ss_pred cCCCcEEEEEE-CCCCCCCEEcceecccCCCccceEeCCcEEEECCCCeEEEEECCCC
Confidence 24565655 7888877532111 1124578999999999 99999999643
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=144.08 Aligned_cols=206 Identities=19% Similarity=0.144 Sum_probs=134.5
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCCceeee
Q 012300 57 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~~~~i~ 135 (466)
..+...|+||++||.++.+|+.. ..|.|. .+..|||.|... +..+.+.|+ +.+.. .....-+..-.
T Consensus 32 ~~~v~~S~Dl~~W~~~g~~l~~~---~~~~~~--~~~~wAP~i~~~---~g~yy~yy~-----~~~~~~~~~igva~s~~ 98 (274)
T cd08990 32 DYHVFSSPDLVNWTDHGVILSVT---DFPAWA--KGQAWAPDVVEK---NGKYYLYFP-----ARDKDGGFAIGVAVSDS 98 (274)
T ss_pred eEEEEECCCCCCcEECcccccCC---CCCccc--cCCcCcCeEEEE---CCEEEEEEE-----eecCCCceEEEEEEeCC
Confidence 35677899999999999999864 224455 347899998887 556755444 22110 00011112223
Q ss_pred cCceeeCCCCCeE--------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 136 PGRIWLDTEGAPI--------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 136 pg~~w~dt~GnpI--------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
|..+|.+....++ .+.|+++++++ +|++||+-... ...+.+-.|+|+.+|+.+..
T Consensus 99 p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~----------------~~~~~~~l~~d~~~~~~~~~ 161 (274)
T cd08990 99 PAGPFKDAGGPILITTPSGGWYSIDPAVFIDD-DGQAYLYWGGG----------------LGLRVAKLKPDMLSLKGEPV 161 (274)
T ss_pred CCCCCCCCCCccccccCCCCCCccCCcEEECC-CCCEEEEECCc----------------CCEEEEEeCccccccCCCcE
Confidence 5566776544442 35688988864 58888884321 01233446789999998776
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--CCCCccCce
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRDMT 285 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~~iDp~ 285 (466)
++...+. +. ......+|||.|++ ++|+|||+|+... ...+++|+|++|.|||+..+.... ......+++
T Consensus 162 ~i~~~~~-~~--~~~~~~~EgP~i~k--~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~gh~~ 232 (274)
T cd08990 162 EIVITDG-AG--DELRRFFEAPWVHK--RNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVILDPPVNGGTNHGS 232 (274)
T ss_pred EEEeccc-cC--CCCCCcccceeEEE--ECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEecCCCCCCCCCCe
Confidence 6543221 11 11245689999996 8999999999753 367999999999999997653221 123567888
Q ss_pred EEEcCCCcEEEEEEecC
Q 012300 286 IFKDDDGVAYLVYSSED 302 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~~ 302 (466)
+|.+ +|+.||+|....
T Consensus 233 ~~~~-~g~~y~~yh~~~ 248 (274)
T cd08990 233 IVEF-KGQWYLFYHRAT 248 (274)
T ss_pred EEEE-CCeEEEEEECCc
Confidence 8864 599999998753
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=140.61 Aligned_cols=215 Identities=19% Similarity=0.147 Sum_probs=132.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+.+..|+||++|+.++.+||+. +.|.. .+..|||.|..+ +-.+.+.|+..... ......+-+..-.|.
T Consensus 32 i~~~~S~Dl~~W~~~g~~l~~~-----~~~~~-~~~~waP~v~~~---~g~y~~~y~~~~~~---~~~~~i~~a~s~~p~ 99 (287)
T cd08999 32 VPIATSTDLVNWTYLGDAFPKL-----PRWWT-GGDFWAPDVSYV---NGKYVLYYSARDKG---SGGQCIGVATADSPL 99 (287)
T ss_pred EEEEECCCCCCcEECCcccCCC-----CCccc-CCCccCceEEEE---CCEEEEEEEeecCC---CCCEEEEEEECCCCC
Confidence 5678899999999999888765 44433 568999988877 56665555522110 000001111111234
Q ss_pred ceeeCCCCCeE-------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEE-EeCCCCCCEEeceec
Q 012300 138 RIWLDTEGAPI-------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCY-SSKDMWTWKNEGIVL 209 (466)
Q Consensus 138 ~~w~dt~GnpI-------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~-sS~DLv~W~~~g~vL 209 (466)
..|......++ .+.|+.|+.++ +|++||+-...... .+. ...+.+. .|+|+..|+.+...+
T Consensus 100 g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~Yl~~~~~~~~------~~~----~~~i~~~~ls~d~~~~~~~~~~i 168 (287)
T cd08999 100 GPFTDHGKPPLCCPEGEGGAIDPSFFTDT-DGKRYLVWKSDGNS------IGK----PTPIYLQELSADGLTLTGEPVRL 168 (287)
T ss_pred CCCccCCcceEecCCCCCCccCCCeEECC-CCCEEEEEeccCCC------CCC----CceEEEEEeCCCCccccCCcEee
Confidence 45654221122 24688888864 67888764322110 000 0113332 478999998765443
Q ss_pred cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCC--cceEEEEEeCCCCCCceecccc--C---CCC--CC
Q 012300 210 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT--KAAVGVAISDYPTGPFDYLYSK--R---PHG--FD 280 (466)
Q Consensus 210 ~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~--~~~IGVA~SdsP~GPf~~~~~~--~---p~g--~~ 280 (466)
......| ....+++|.+++ .+|+|||+|+....... ..+|++|+|++|.|||++.... . +.+ ..
T Consensus 169 ~~~~~~~-----~~~~~EgP~i~k--~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~~~g 241 (287)
T cd08999 169 LRNDEDW-----EGPLVEAPYLVK--RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGRWVG 241 (287)
T ss_pred ecccccc-----cCCceEeeEEEE--ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCeEEc
Confidence 2222222 245799999996 89999999997643222 5789999999999999975321 1 111 23
Q ss_pred ccCceEEEcCCCcEEEEEEecC
Q 012300 281 SRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
.-++++|+++||+.|++|.+..
T Consensus 242 ~gh~~~~~~~~g~~~~~yh~~~ 263 (287)
T cd08999 242 PGHNTVVTDDDGRDWLLYHAWD 263 (287)
T ss_pred CCCCeEEECCCCCEEEEEEEEc
Confidence 4688999998999999998753
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-14 Score=139.65 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=125.4
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCC-CCCCEE-eceeccCCCcccccccCCCCeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKN-EGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-Lv~W~~-~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
+++|++++. +|+||||.+....... .+.. .....+.+..|++ +.+|+. .+.+|...+..| +...++
T Consensus 80 ~~~P~vi~~--~g~yyl~Y~~~~~~~~--~~~~---~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~-----~~~~~~ 147 (291)
T cd08994 80 THNPTIKRF--DGKYYLYYIGNTDPGP--RPGH---RNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGW-----DNLITS 147 (291)
T ss_pred ccCCeEEEE--CCEEEEEEEcccCCcc--cccC---CCCceEEEEEeCCCCCCcEECCCceecCCCCcc-----cccccc
Confidence 478888876 4899999886431100 0000 1124588889988 579998 556665443322 345689
Q ss_pred eceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceeccccC----CCCCCccCceEEEcCCCcEEEEEEec
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
+|.|+++ .+|+|||||++...+. ...++|+|+|+++.|||+...... ......+||.||+++ |++||+|+..
T Consensus 148 ~p~v~~~-~~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~-g~yym~~~~~ 225 (291)
T cd08994 148 NPAVTRR-PDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDK-GQFHMIVKDM 225 (291)
T ss_pred CCCeEEe-CCCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEEeC-CEEEEEEeec
Confidence 9999983 3899999998764321 357899999999999999864221 123567999999975 8999999975
Q ss_pred CC------CcEEEEEcCCCCCCcccc--EE---Eee-------cCceeeeeEEE-EECCEEEEEEe
Q 012300 302 DN------SELHIGPLTSDYLDVSNV--VR---RIL-------VGQHREAPALF-KHLGTYYMVTS 348 (466)
Q Consensus 302 ~n------~~i~i~~Ls~D~~~~~g~--~~---~i~-------~g~~~EgP~if-K~~G~YYL~yS 348 (466)
.+ ..+.+++ ++|+..++-. .. .+. .....|.|.|+ +.+|+.+|+|+
T Consensus 226 ~~~~~~~~~~i~~a~-S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~g~~~~l~~ 290 (291)
T cd08994 226 LGYVTGEKGGGAYFR-SKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDEDGKPTYLFF 290 (291)
T ss_pred ccCcCCCCceEEEEE-CCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCCCCEEEEec
Confidence 32 3455555 6788776422 10 111 13468999999 99999999986
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=135.48 Aligned_cols=206 Identities=13% Similarity=0.126 Sum_probs=131.4
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece--eccCCCcccccccCCCCeeeec
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--VLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~--vL~~~~~~~~~~~~~~~~iWAP 229 (466)
+|++++. +|+|||+.+....+ ....+.+..|+|++||+..+. +++..+..+ ....+|+|
T Consensus 2 nP~v~~~--~G~y~l~y~~~~~~------------~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~-----~~~gv~dP 62 (268)
T cd08993 2 NPAVVYD--NGEFYLLYRAAGND------------GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGF-----EEGGVEDP 62 (268)
T ss_pred cCeEEEE--CCEEEEEEEEECCC------------CceEEEEEEECCCceEEECCcceEcCCCCCcc-----cccCccCc
Confidence 3567764 58999998753210 123588899999999998653 334222221 34678999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEc-CCCcEEEEEEec-----CC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE-----DN 303 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~D-dDG~~YL~~g~~-----~n 303 (466)
.|++ .+|+|||+|++........+|++|+|++. ..|+..+.. .....+|+.+|.+ .||++||+|... ..
T Consensus 63 ~v~~--~~g~y~m~Yta~~~~~~~~~i~lA~S~D~-~~W~~~~~~--~~~~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~ 137 (268)
T cd08993 63 RIVK--IDDTYYITYAARPNAPNGTRIGLATTKDF-ITFERLGTS--LVPNNRDGILFPEKINGKYVMLHRPFEYGGTSP 137 (268)
T ss_pred EEEE--ECCEEEEEEEccCCCCCCcEEEEEEeCCc-ceEEEeccc--CCCCCCCEEEeeEEECCEEEEEEccccCCCCCC
Confidence 9997 79999999998653224578999999995 678876432 1234578888864 379999999643 23
Q ss_pred CcEEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC-CCCCCcEEEEE---eCCCCCCcee
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT-GWAPNEALVHA---AESIMGPWED 372 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~EgP~ifK~~G~YYL~yS~~t-g~~~n~~v~~~---Sds~~GPw~~ 372 (466)
..|.+++ ++|+..+......+.+ ....+||..++.++.+||+|-+.. .+...|.+++. -++|.-.+.+
T Consensus 138 ~~I~lA~-S~Dl~~W~~~~~~~~~~~~~wd~~~ig~g~~pi~~~~g~l~~yhg~~~~~~~~Y~~g~~lld~~dp~~~~~~ 216 (268)
T cd08993 138 PDMWLSF-SPDLVHWGNHRFVLSPRPNHWEQLKIGAGTPPIKTEEGWLVLYHGVDQSCGSVYRLGAALLDLEDPTKVIAR 216 (268)
T ss_pred CcEEEEE-CCCcCccCCCeEEecCCCCceeeceecCCCCCcCcCCCEEEEEeccCCCCCcEEeeeEEEEcccCchHHhcc
Confidence 5788885 7888888653322221 124566777765434677775432 22234666543 2344333446
Q ss_pred CCCccccCCc
Q 012300 373 MGNPCIGGNK 382 (466)
Q Consensus 373 ~gnPi~~~~~ 382 (466)
..+|++....
T Consensus 217 ~~~p~l~p~~ 226 (268)
T cd08993 217 SRRPLLEPET 226 (268)
T ss_pred cCCceecCCc
Confidence 5678876543
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=135.80 Aligned_cols=207 Identities=13% Similarity=-0.011 Sum_probs=128.3
Q ss_pred ecCccccchhhhhhccccCCCCCCC-------CCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGK-------RSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGND 130 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~ 130 (466)
+.+..|+||++||.++.+++.+..- ..+.|. .+..|||.|... +..+.+.|+.... ...... ..-
T Consensus 38 i~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~--~~~~WAP~v~~~---~g~yyl~~s~~~~--~~~~~~-i~v 109 (269)
T cd08986 38 IPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWY--KNAVWAPELHYI---KGRWYLVACMNNP--GYGGSS-ILL 109 (269)
T ss_pred eEEEeCccccCccccCcccccCCcccccccccccCCcc--cCCcCCceEEEE---CCEEEEEEEccCC--CCCceE-EEE
Confidence 4467899999999999888755100 011122 457899999887 6777566652210 000111 111
Q ss_pred ceeeecCceeeCCCCC-eE-EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 131 SFYYYPGRIWLDTEGA-PI-QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 131 ~~~i~pg~~w~dt~Gn-pI-~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
+..-.|..+|.+..+. ++ .+.|+.|+.++ +|+.||+-... .+ +--+.|+.........
T Consensus 110 a~a~~p~Gp~~~~~~~~~~~~~iD~~~f~D~-DG~~Yl~~~~~------------------~i-~~l~~d~~~~~~~~~~ 169 (269)
T cd08986 110 STSGKIEGPYKHITGNKPLFPGIDPSLFEDD-DGKVYLVWHNT------------------LI-ARLKDDLSGLAGDPVR 169 (269)
T ss_pred EeCCCCCCCcEeccCCCCCCCccCCceEEcC-CCCEEEEeeCC------------------ce-EeccCccccccCCcEE
Confidence 1112366678765443 32 46799998874 68888874311 01 2235666655544433
Q ss_pred ccCCCc-ccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCc
Q 012300 209 LAAEET-NETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDM 284 (466)
Q Consensus 209 L~~~~~-~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp 284 (466)
+..... .+ ....+++|.|++ ++|+|||+|++... .....+|+||+|++|.|||++.... ....-+.
T Consensus 170 ~~~~~~~~~-----~~~~~EgP~i~k--~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~~~~---~~g~Gh~ 239 (269)
T cd08986 170 IDPSPTFYK-----DEIGHEGAFVFK--YGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGARYFA---GRFLGHN 239 (269)
T ss_pred Eeccccccc-----CCccccccEEEE--ECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccccCcc---ccccCCC
Confidence 322111 11 235689999996 89999999987431 1235689999999999999986421 1223466
Q ss_pred eEEEcCCCcEEEEEEecC
Q 012300 285 TIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~~ 302 (466)
++|+++||+.|+++.++.
T Consensus 240 ~~v~~~~G~~~~~~h~~~ 257 (269)
T cd08986 240 TPFQDLDGRWWCTAFFNP 257 (269)
T ss_pred ceEECCCCCEEEEEEcCC
Confidence 789999999999998754
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=133.01 Aligned_cols=198 Identities=18% Similarity=0.152 Sum_probs=128.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..+..|+||++||+++.+||+.. +.|. ....|||.|-.. +-.+.+.|+.. ....-+..-.|.
T Consensus 36 ~~~~~S~Dl~~W~~~g~~l~~~~----~~~~--~~~~wAP~v~~~---~g~yy~yys~~---------~~i~va~s~~p~ 97 (275)
T cd09004 36 FDVFSSKDLVNWTKEGIILDMAD----VSWA--NRAAWAPSVIER---NGKYYFYFSAN---------GGIGVAVADSPL 97 (275)
T ss_pred EEEEECCCCCCceECcccccccC----Cccc--CCCcCCCeEEEE---CCEEEEEEEcC---------CcEEEEEeCCCC
Confidence 45678999999999999997641 3454 347999998887 66675666621 111111222355
Q ss_pred ceeeCCCCCeEE--------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceec
Q 012300 138 RIWLDTEGAPIQ--------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVL 209 (466)
Q Consensus 138 ~~w~dt~GnpI~--------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL 209 (466)
..|.+..++|+. +.|+.|+.++ +|++||+-... + ....+-.|.|+.+|+.....+
T Consensus 98 gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~-~---------------~~~i~~l~~d~~~~~~~~~~~ 160 (275)
T cd09004 98 GPFKDALGKPLIDKFTFGAQPIDPDVFIDD-DGQAYLYWGGW-G---------------HCNVAKLNEDMISFDGERDGS 160 (275)
T ss_pred CCCCCCCCCccccCCcCCCCccCCCeEECC-CCCEEEEEcCc-C---------------CEEEEEECCCcccccCcceee
Confidence 667664566653 3588888864 67888773210 0 011223578898887665443
Q ss_pred cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC---CCC--CCccCc
Q 012300 210 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR---PHG--FDSRDM 284 (466)
Q Consensus 210 ~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~---p~g--~~~iDp 284 (466)
... ....+++|.+++ ++|+|||+|+.........++++|+|++|.|||+...... +.+ ...-..
T Consensus 161 ~~~---------~~~~~EgP~i~k--~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~~~~~~g~gH~ 229 (275)
T cd09004 161 EIT---------PKNYFEGPFMFK--RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQDPGIATGPGHH 229 (275)
T ss_pred ecc---------CCCceecceEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCCCCCcccCCCC
Confidence 111 234689999996 8999999999754322356899999999999999764211 111 234456
Q ss_pred eEEEcC-CCcEEEEEEec
Q 012300 285 TIFKDD-DGVAYLVYSSE 301 (466)
Q Consensus 285 ~vF~Dd-DG~~YL~~g~~ 301 (466)
++|+++ +|+.|++|...
T Consensus 230 ~~~~~~~~~~~~~~yh~~ 247 (275)
T cd09004 230 SVVNVPGTDEWYIVYHRR 247 (275)
T ss_pred EEEEeCCCCeEEEEEeCC
Confidence 788875 58899999864
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-13 Score=139.82 Aligned_cols=174 Identities=20% Similarity=0.298 Sum_probs=120.1
Q ss_pred ceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEE
Q 012300 154 GILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIY 233 (466)
Q Consensus 154 ~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viy 233 (466)
++++. +|+|+||.++.... ..| +...+.+++|+||+||+.++.||.+... .+..++|+++++.
T Consensus 31 g~~~~--~G~yHlfyq~~p~~---~~~------g~~~Wgha~S~Dlv~W~~~~~al~P~~~------~d~~G~~sGsav~ 93 (445)
T TIGR01322 31 GLIYF--KGEYHLFYQWFPFG---PVH------GLKSWGHYTSKDLVHWEDEGVALAPDDP------YDSHGCYSGSAVD 93 (445)
T ss_pred cceEE--CCEEEEEEccCCCC---Ccc------CceEEEEEECCCccccEECCccCcCCCc------ccCCceEECeEEe
Confidence 34443 59999998864321 111 2235789999999999999999876532 1346799999996
Q ss_pred EccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccc-c--C-CCC--CCccCceEEEcCCCcEEEEEEecC--
Q 012300 234 NDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYS-K--R-PHG--FDSRDMTIFKDDDGVAYLVYSSED-- 302 (466)
Q Consensus 234 n~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~-~--~-p~g--~~~iDp~vF~DdDG~~YL~~g~~~-- 302 (466)
.+|+++|||++.... ...+.+++|+|++ .+.|+..+. . . |.+ ...+||.||.+ +|++||++++..
T Consensus 94 --~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~-~g~~~M~~g~~~~~ 169 (445)
T TIGR01322 94 --NNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGIVVIELPPAGYTAHFRDPKVWKH-NGHWYMVIGAQTET 169 (445)
T ss_pred --eCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCCceEeCCCCCCcCcCCCCcEEeE-CCEEEEEEEEecCC
Confidence 789999999975321 1234567899988 578987542 1 1 222 24689999985 689999998742
Q ss_pred -CCcEEEEEcCCCCCCcc--ccEEEee------cCceeeeeEEEEECCEEEEEEeC
Q 012300 303 -NSELHIGPLTSDYLDVS--NVVRRIL------VGQHREAPALFKHLGTYYMVTSG 349 (466)
Q Consensus 303 -n~~i~i~~Ls~D~~~~~--g~~~~i~------~g~~~EgP~ifK~~G~YYL~yS~ 349 (466)
.+.+.+.+ |+|+.+++ +....-. .+...|+|.+|+.+|+++|++|.
T Consensus 170 ~~g~i~ly~-S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~k~vL~~s~ 224 (445)
T TIGR01322 170 EKGSILLYR-SKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDGQDVLLFSP 224 (445)
T ss_pred CceEEEEEE-CCCcccCeEecccccccccccCCccceEECCeEEEECCcEEEEEec
Confidence 23454544 88888774 3221110 13468999999999999999984
|
|
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=139.17 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=121.3
Q ss_pred CceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEE
Q 012300 153 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVI 232 (466)
Q Consensus 153 ~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~vi 232 (466)
.++++. +|+|+||.++..... .| +...+.+++|+||+||+..+.||.+... .+..++|+++++
T Consensus 13 nGl~~~--~G~yHlFyq~~p~~~---~~------g~~~Wgha~S~Dlv~W~~~~~aL~P~~~------~d~~g~~sGsav 75 (437)
T smart00640 13 NGLIYY--KGKYHLFYQYNPFGP---VW------GNIHWGHAVSKDLVHWTHLPVALAPDEW------YDSNGVFSGSAV 75 (437)
T ss_pred CeeeEE--CCEEEEEEecCCCCC---CC------CCeEEEEEEcCCcceeeecCcccCCCCc------CCCCcEEEEEEE
Confidence 346665 599999998753211 11 2345889999999999999999876531 134569999999
Q ss_pred EEccCCEEEEEEEEeCCC-----CCcceEEEEEeCCCCCCceecc--cc---CCC--CCCccCceEEEcCCCcEEEEEEe
Q 012300 233 YNDRTGKYVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLY--SK---RPH--GFDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 233 yn~~~GkYyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~--~~---~p~--g~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
. .+|+|+|||++.... .....+.++.+++....|+... .. .|. ....+||.||.+++|++||+++.
T Consensus 76 ~--~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~ 153 (437)
T smart00640 76 I--DPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGA 153 (437)
T ss_pred E--CCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEE
Confidence 7 677899999875311 1223444555555567898752 21 121 24679999999876799999996
Q ss_pred cC---CCcEEEEEcCCCCCCcc--ccEEEe---ecCceeeeeEEEEECC-----EEEEEEeCCC
Q 012300 301 ED---NSELHIGPLTSDYLDVS--NVVRRI---LVGQHREAPALFKHLG-----TYYMVTSGCT 351 (466)
Q Consensus 301 ~~---n~~i~i~~Ls~D~~~~~--g~~~~i---~~g~~~EgP~ifK~~G-----~YYL~yS~~t 351 (466)
.. .+.+.+.+ |+|+.+++ +..... ..+...|+|-+|+.++ +++|++|...
T Consensus 154 ~~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~g 216 (437)
T smart00640 154 SDEDKTGIALLYR-STDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQG 216 (437)
T ss_pred EecCCCeEEEEEE-CCCcccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcCC
Confidence 42 23355554 67887764 332111 1135799999999998 9999999653
|
|
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=127.36 Aligned_cols=215 Identities=18% Similarity=0.172 Sum_probs=133.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..|..|+||++||..+.+++... +. +.+.. .+-.|||.|.... +..+.+.|+-... ...... ..-+..--+.
T Consensus 27 ~~~~~S~Dl~~W~~~~~~~~~~~-~~-~~~~~-~~~~wap~v~~~~--~g~~~l~yt~~~~--~~~~~~-i~~a~s~d~~ 98 (286)
T cd08772 27 IAHATSKDLVNWTDHPVALVWWA-RR-GGPKD-SGGIWAPSIVYIE--NGKFYLYYTDVSF--TKNQQT-IGVATAEDGN 98 (286)
T ss_pred EEEEECCCcCcceECCccchhhc-cc-CCCCC-CCcEecceEEEcC--CCCEEEEEEeecC--CCCcee-EEEEEcCCCC
Confidence 57889999999999999885210 00 12222 4589999887662 2667566662110 001111 0000111122
Q ss_pred ceeeCCCC-----------CeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 138 RIWLDTEG-----------APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 138 ~~w~dt~G-----------npI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
..|.+... ....+.||.|++++ +|+|||+-..... .....|.+++|+|+.+|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~y~~~~~~~~------------~~~~~i~~~~s~d~~~w~~~~ 165 (286)
T cd08772 99 GPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDD-DGKWYLVFGSGDH------------HNFGGIFLYESDDDTTWKKGS 165 (286)
T ss_pred CCCccccccccccCCCCccccccccCCeEEEcC-CCCEEEEEccccC------------CCCCeEEEEEcCCCCCccccc
Confidence 33432211 12235799999875 4888887543211 012468899999999998877
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceecccc---------C
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSK---------R 275 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~---------~ 275 (466)
..+.... ......+++|.+++ .+|+|||+|+..... ....++++|+|+++.|||+..... .
T Consensus 166 ~~~~~~~------~~~~~~~E~P~~~~--~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (286)
T cd08772 166 AELLISE------GEGGKQIEGPGLLK--KNGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLSLTGGN 237 (286)
T ss_pred ceeeEee------ccCCCceeccEEEE--ECCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccCCCCCCcccccccc
Confidence 5421111 11346789999996 889999999986532 246789999999999999875321 0
Q ss_pred CCCCCccCceEEEcCCCcEEEEEEec
Q 012300 276 PHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 276 p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
..+.....+++|+|.+|+.||++...
T Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (286)
T cd08772 238 DGGVGPYHAAAFNDAGGRVVLVYHAY 263 (286)
T ss_pred CCCCCCCccEEEECCCCCEEEEEEec
Confidence 11234567788998899999998764
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=125.50 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=126.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..|..|+||++||+.+.+|+++ +.... ....|+|-+... +-.+.+.||-.... ...... ..-+ .-..+
T Consensus 32 wgha~S~Dlv~W~~~~~al~~~-----~~~~d-~~g~~sgs~~~~---~g~~~l~YTg~~~~-~~~~~~-i~~A-~S~D~ 99 (280)
T cd08995 32 WSLLTTKDLVNYEDHGEAIPRG-----GDEDD-DDAIGTGSVIKG---EGTYHAFYTGHNLD-GKPKQV-VMHA-TSDDL 99 (280)
T ss_pred EEEEEccCcCccEECcceecCC-----CCccc-ccCceEeEEEee---CCEEEEEEEEECCC-CCCcEE-EEEE-ECCCC
Confidence 5789999999999999999775 22222 346888865554 45665666511110 000000 0000 00123
Q ss_pred ceeeCCCCCeEE----------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 138 RIWLDTEGAPIQ----------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 138 ~~w~dt~GnpI~----------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
..|....++||. ..||.|++++++|+|||+-....... . . .....|.+++|+||.+|+..+.
T Consensus 100 ~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~-~---~----~~~g~i~~~~S~Dl~~W~~~~~ 171 (280)
T cd08995 100 ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDG-P---Y----NRRGCIALFTSKDLKNWEYEEP 171 (280)
T ss_pred CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCC-C---C----CCCeEEEEEEeCCcCcceecCc
Confidence 445443345543 24899998766799999744321100 0 0 0123478899999999999875
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEE
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIF 287 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF 287 (466)
+.... ....+++|.++. .+|+|||+|+... ....+.+++++++.|||+......-.|....=|..|
T Consensus 172 ~~~~~---------~~~~~E~P~l~~--~~g~~~L~~s~~~---~~~~~~Y~~~~~~~g~~~~~~~~~~dg~dfYA~~~~ 237 (280)
T cd08995 172 FYAPG---------LYFMPECPDLFK--MGDWWYLVYSEFS---ENRKTHYRVSKSPFGPWRAPDDDTFDGRAFYAAKTA 237 (280)
T ss_pred eecCC---------CcceeecceEEE--ECCEEEEEEEecc---CCCcEEEEEeCCCCCCeEcCCcCccCcccccceeEE
Confidence 54321 134689999996 8999999999764 234677888999999997543211125667778888
Q ss_pred EcCCCcEEEE
Q 012300 288 KDDDGVAYLV 297 (466)
Q Consensus 288 ~DdDG~~YL~ 297 (466)
.|+ |+..|+
T Consensus 238 ~~~-~r~i~~ 246 (280)
T cd08995 238 SDG-TRRFLF 246 (280)
T ss_pred EeC-CeEEEE
Confidence 887 765543
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >cd08988 GH43_ABN Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-12 Score=124.68 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=118.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccc-----cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCce
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAK-----RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF 132 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~ 132 (466)
.....|+||++||..+.+|+++ |.|.+ ..+..|||.|... +-.+.+.|+.... ..... ..+-+.
T Consensus 21 ~~v~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~~WAP~v~~~---~G~yylyys~~~~--~~~~~-~igva~ 89 (279)
T cd08988 21 ITILSSKDLVNWTYSGSAFATE-----PTWKKRVPPSFDGHLWAPDIYQH---NGKFYLYYSVSAF--GSNTS-AIGLAV 89 (279)
T ss_pred EEEEECCCcCCccccCccccCC-----CccccccCCCCCCCEecceEEEE---CCEEEEEEEeccC--CCCCc-eEEEEE
Confidence 3467889999999999999765 44432 1346899999887 6677555551110 00000 011111
Q ss_pred eeecCceeeCCC---CCeE---------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCC
Q 012300 133 YYYPGRIWLDTE---GAPI---------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDM 199 (466)
Q Consensus 133 ~i~pg~~w~dt~---GnpI---------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DL 199 (466)
.-.|..+|.+.. ..+| .+.|++++.|+ +|++||+-.... .++.+.+ +.|+
T Consensus 90 s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~----------------~gi~~~eL~~d~ 152 (279)
T cd08988 90 NKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQ-HGQPWLSFGSFW----------------GGIKLFELDKDT 152 (279)
T ss_pred cCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcC-CCCEEEEecccC----------------CCEEEEEECccc
Confidence 112333332211 1222 24688998875 789998732110 1233333 3454
Q ss_pred CCCEEecee--ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceecccc
Q 012300 200 WTWKNEGIV--LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSK 274 (466)
Q Consensus 200 v~W~~~g~v--L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~ 274 (466)
..-...+.. +.... .....+++|.|++ ++|+|||+++.... .....+++||+|++|.|||++....
T Consensus 153 ~~~~~~~~~~~i~~~~-------~~~~~~Egp~i~k--~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~~~~~ 223 (279)
T cd08988 153 MKPAEPGELHSIAGRE-------RSSAAIEAPFILY--RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLDKTGR 223 (279)
T ss_pred CCccCCCcceEEeccC-------CCCCceEeeEEEE--cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCCCCCC
Confidence 432111111 11110 0135689999996 89999999986432 1234689999999999999874211
Q ss_pred C---CCC----------CCccCceEEEcCCCcEEEEEEec
Q 012300 275 R---PHG----------FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 275 ~---p~g----------~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
. ..+ ...-..+||+|+ |+.||+|...
T Consensus 224 p~~~~~~~~~~~~~~~~~g~GH~~v~~~~-g~~~~~yH~~ 262 (279)
T cd08988 224 SMLQGGGTILDKGNDRWVGPGHNSAYTDD-GKDYLVLHAY 262 (279)
T ss_pred CcccCCceEEEcCCCcEEcCCCCEEEeCC-CCEEEEEEEe
Confidence 1 000 112467889876 8999999864
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-12 Score=126.30 Aligned_cols=218 Identities=16% Similarity=0.159 Sum_probs=128.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+.+..|+||++|+.++.+++++. +.|. .+..|||.|... +-.+.+.|+-.... .+.. ...-+..-.|-
T Consensus 25 i~~~~S~Dl~~W~~~~~~~~~~~----~~~~--~~~~waP~v~~~---~g~yyl~ys~~~~~--~~~~-~i~~a~s~~p~ 92 (294)
T cd08991 25 FAVYSSPDLVDWKLHGGALLALD----DDWG--RRGFWAPEVYYY---NGKFYMYYSANDRD--EKTE-HIGVAVSDSPL 92 (294)
T ss_pred eEEEECCCCCCceECCccccCCC----CCcc--CCcEEccEEEEE---CCEEEEEEEeccCC--CCcc-eEEEEEeCCCC
Confidence 34567999999999998887652 2365 457999998776 56675555521110 0111 11111112244
Q ss_pred ceeeCCCCCeE----EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcE-EEEEeCCCCCCEEeceecc-C
Q 012300 138 RIWLDTEGAPI----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGV-GCYSSKDMWTWKNEGIVLA-A 211 (466)
Q Consensus 138 ~~w~dt~GnpI----~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi-~v~sS~DLv~W~~~g~vL~-~ 211 (466)
.+|.+....++ .+.|+.++.++ +|++||+-+....... ..++ .+--|.|+.+|+....... .
T Consensus 93 gp~~~~~~~~~~~~~~~iD~~vf~d~-dG~~yl~~~~~~~~~~-----------~~~i~~~~l~~d~~~~~~~~~~~~~~ 160 (294)
T cd08991 93 GPFRDIKKPPIDFEPKSIDAHPFIDD-DGKPYLYYSRNNYGNR-----------VSDIYGTELVDDKLSIKTELVGPPIP 160 (294)
T ss_pred CCCCcCCCCcccCCCcccCCceEECC-CCCEEEEEEecCCCCc-----------ccceEEEEEccceeeeccceeecccc
Confidence 55654322222 24688888875 5889987653321100 0123 2335778888764332211 1
Q ss_pred CCcc--------cc-cccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc---CCC--
Q 012300 212 EETN--------ET-HDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK---RPH-- 277 (466)
Q Consensus 212 ~~~~--------~~-~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~---~p~-- 277 (466)
...+ |. ........+++|.+++ ++|+|||+|++........++++|+|++|.|||++.... ...
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl~~~~~~ 238 (294)
T cd08991 161 VSAPGIDEIFERWRFGEGKDWRTNEGPTVLK--HNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPILRRNGD 238 (294)
T ss_pred ccccccccccccccccccccCceeeCcEEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEecCCCceEeeCCC
Confidence 1100 00 0012345799999996 899999999975432234689999999999999975211 001
Q ss_pred --CCCccCceEEEcCC-CcEEEEEEec
Q 012300 278 --GFDSRDMTIFKDDD-GVAYLVYSSE 301 (466)
Q Consensus 278 --g~~~iDp~vF~DdD-G~~YL~~g~~ 301 (466)
-......++|+++| |+.||+|.+.
T Consensus 239 ~~~~g~gh~~~~~~~~g~~~~~~yh~~ 265 (294)
T cd08991 239 KGVEGTGHNSVVKSPDGGELYIVYHAH 265 (294)
T ss_pred CceEeCCCCceEECCCCCEEEEEEeee
Confidence 12346778999888 7899999874
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=124.97 Aligned_cols=201 Identities=16% Similarity=0.179 Sum_probs=133.6
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-.+..... .| +...+..++|+||++|+..+.||.+.... +..++|..++
T Consensus 12 PnG~~~~--~G~yHlFyQ~~P~~~---~~------g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~------d~~g~~SGs~ 74 (308)
T PF00251_consen 12 PNGLVYY--DGKYHLFYQYNPFGP---EW------GNMHWGHATSKDLVHWEHLPVALPPDEEY------DADGCFSGSA 74 (308)
T ss_dssp EEEEEEE--TTEEEEEEEEETTSS---SS-------SBEEEEEEESSSSSEEEEEEEE-SSSGG------GTTEEEEEEE
T ss_pred CccCeEe--CCEEEEEeccCCCCc---cc------ceeEEEEEECCCCCCceeCCceEcccccC------CcCccCcceE
Confidence 3467774 599999988754211 11 23567899999999999999999876421 3467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc---cc---CCC--CCCccCceEEEcCCCcEEEEEEecCC
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY---SK---RPH--GFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~---~~---~p~--g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
+. .+++++|||++...+. .+.+.+|+|.+....|+... .. .|. ....+||.||.+++|++||+.++...
T Consensus 75 ~~--~~~~~~~~YTg~~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~ 151 (308)
T PF00251_consen 75 VV--DDDNLVLFYTGNNRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRD 151 (308)
T ss_dssp EE--ETTCEEEEEEEEETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEET
T ss_pred EE--ECCEEEEEEeccCCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEecccc
Confidence 97 5568999999876532 67899999977677888742 11 122 24689999977778999999987532
Q ss_pred --CcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECCE--------EEEEEeCCCCC-CCCcEEEEEeCC--C
Q 012300 304 --SELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLGT--------YYMVTSGCTGW-APNEALVHAAES--I 366 (466)
Q Consensus 304 --~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~--------YYL~yS~~tg~-~~n~~v~~~Sds--~ 366 (466)
+.+.+.+ ++|+.+++-.-.... .+...|+|.+|+.+++ ++|++|..... ......+++++- .
T Consensus 152 ~~g~i~~y~-S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~~d~~ 230 (308)
T PF00251_consen 152 GRGCILLYT-SDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYMVGDFDFD 230 (308)
T ss_dssp TEEEEEEEE-ESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEEEEEEETT
T ss_pred CcceEEEEE-cCCcccCceeCcccccccccccccccceEEEECCcccccceEEEEEEecccccccccccceEEeEEecCC
Confidence 2344444 688887753221111 2568999999998777 68999852111 122333444442 5
Q ss_pred CCCceeC
Q 012300 367 MGPWEDM 373 (466)
Q Consensus 367 ~GPw~~~ 373 (466)
.+.|+..
T Consensus 231 ~~~f~~~ 237 (308)
T PF00251_consen 231 GGTFTPD 237 (308)
T ss_dssp TTEEEES
T ss_pred CCeeeee
Confidence 5677654
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-12 Score=126.96 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=125.8
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeecc-CCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 57 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLD-ENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~-~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
-.++..|.||++||.++.+++++ .-+.|+. ..|||.|.+.-. .+..+.+.|+ ++-.. ..-+..-.
T Consensus 47 ~i~v~~S~DL~~W~~~g~v~~~~---~~~~w~~---~~WAP~v~~~~~~~~gkyylyy~------~~~~~--igva~Sds 112 (311)
T cd09003 47 DITVISSDDMVNWTDHGEIFVPN---GIAKWAG---NSWAPSIAVKKINGKGKFYLYFA------NGGGG--IGVLTADS 112 (311)
T ss_pred cEEEEECCCCCCcEEcccccCcC---CCCCccc---ccCCCceEEeccCCCCEEEEEEe------cCCCe--EEEEEcCC
Confidence 35677899999999999999743 1257764 679999887610 0156644444 11100 11112233
Q ss_pred cCceeeCCCCCeEE------------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCC
Q 012300 136 PGRIWLDTEGAPIQ------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTW 202 (466)
Q Consensus 136 pg~~w~dt~GnpI~------------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W 202 (466)
|..+|.+..|+|+. +.|+.++.|+ +|+.||+-....... .+ .....+.+.+ ++|+..-
T Consensus 113 P~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~~~~---~~-----~~~~~i~i~~l~~D~~~~ 183 (311)
T cd09003 113 PVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDD-DGQGYLYFGGGVPGG---RW-----ANPNTARVIKLGDDMISV 183 (311)
T ss_pred CCCCcccCCCCeeecCCCCCccCCccccCCCeEECC-CCCEEEEECCccCCC---cc-----ccCCCEEEEEeCCCceec
Confidence 67788876566653 3688888875 577777643211000 00 0112345544 4477654
Q ss_pred EEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCCCCCCceeccccC--
Q 012300 203 KNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDYPTGPFDYLYSKR-- 275 (466)
Q Consensus 203 ~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~SdsP~GPf~~~~~~~-- 275 (466)
+.+...+. ....++||.+++ ++|+|||+|+.... .....++++|+|++|.|||+..+...
T Consensus 184 ~g~~~~i~-----------~~~~~Egp~~~K--~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~il~~ 250 (311)
T cd09003 184 DGSAVTID-----------APYFFEASGLHK--INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIILKN 250 (311)
T ss_pred cCCceEcc-----------CCCceEeeeEEE--ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccCCEeccC
Confidence 43222211 124689999996 89999999986532 12457899999999999999754221
Q ss_pred CC---C-CCccCceEEEcCCCcEEEEEEec
Q 012300 276 PH---G-FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 276 p~---g-~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
+. + ...-..++|.+ +|+.|++|...
T Consensus 251 ~~~~~~~~g~gH~s~~~~-~g~~y~vyH~~ 279 (311)
T cd09003 251 PGAFFGNGGNNHHSIFEF-KGKWYIAYHAR 279 (311)
T ss_pred CccccCCccCCCccEEEe-CCeEEEEEeCC
Confidence 11 1 13346677764 78999999853
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=121.72 Aligned_cols=214 Identities=15% Similarity=0.067 Sum_probs=124.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc--cCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD--NGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~--~~~~~~~i~ 135 (466)
+.+..|+||++||..+.+++++. .-|. ....|||.|.+. +-.+.+.|+ +.+.... ...-+..-.
T Consensus 38 i~v~~S~DLv~W~~~g~~~~~~~----~~~~--~~~~WAP~v~~~---~G~yyly~s-----~~~~~~~~~~~~va~s~~ 103 (291)
T cd08981 38 FDVYKSKDLKDWEGPYPVFRPPD----DFWA--DDNFWAPEVHEY---KGRYYMFAT-----FHNPGGERRGTAILVSDS 103 (291)
T ss_pred EEEEECCChhcccccceeeccCC----CcCc--cccccCCeeeee---CCEEEEEEE-----eccCCCceeeEEEEECCC
Confidence 45678999999999999997651 1254 336899999876 777765554 1211100 011111123
Q ss_pred cCceeeCCCCCeE-----EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-e
Q 012300 136 PGRIWLDTEGAPI-----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-V 208 (466)
Q Consensus 136 pg~~w~dt~GnpI-----~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-v 208 (466)
|-.+|.+..+.++ .+.|++++.|+ +|+.||+-...-... ...++.+.+ +.|+..-..+.. +
T Consensus 104 p~GP~~~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~~~~~~~~-----------~~~~i~~~eL~~d~~~~~ge~~~i 171 (291)
T cd08981 104 PEGPFVPHSDGPVTPEDWMCLDGTLYVDE-DGKPWMVFCHEWVQV-----------YDGTIEAVRLSPDLSRAIGEPVLL 171 (291)
T ss_pred CCCCCEeCCCCccCCCCCceEcCceEEcC-CCCEEEEEEeccccc-----------CCCCEEEEEeCCCccccCCceEEE
Confidence 6667776543343 34688888774 577776532110000 001233333 455543322222 3
Q ss_pred ccCCCccccccc------CCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCCceeccccCCCCCC
Q 012300 209 LAAEETNETHDL------YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGPFDYLYSKRPHGFD 280 (466)
Q Consensus 209 L~~~~~~~~~~~------~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~GPf~~~~~~~p~g~~ 280 (466)
+...+.+|.... .....++||.+++ .++|+|||+|++.. ....++++|.|++ |+|||++..... ....
T Consensus 172 ~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k-~~~G~YYl~yS~~~--~~~Y~~~~~rs~s~~~~GPy~~~~~pi-~~~~ 247 (291)
T cd08981 172 FRASEAPWVREFGLIGRGSGGYVTDGPFLYR-TKSGRLLMLWSSFS--DGGYAQGVARSESGTLLGPWVQEPEPL-ISDD 247 (291)
T ss_pred ecCCcCCcccccccccccCCCeEeeCCEEEE-eCCCcEEEEEEecC--CCCEEEEEEEcCCCCccCCcEECCCcc-cCCC
Confidence 332222332110 1234579999996 35899999998632 2356788888886 999999865211 1122
Q ss_pred ccCceEEEcCCCcEEEEEEec
Q 012300 281 SRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~ 301 (466)
.-..++|++.||+.|++|...
T Consensus 248 ~GH~s~v~~~~G~~~~vyH~~ 268 (291)
T cd08981 248 GGHGMLFRTFDGRLMLSLHTP 268 (291)
T ss_pred CCCCeeEEcCCCCEEEEEECC
Confidence 345678989999999999875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=127.30 Aligned_cols=237 Identities=24% Similarity=0.308 Sum_probs=135.1
Q ss_pred ccCcEEEEEeCCCC----CCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcce----
Q 012300 187 DIIGVGCYSSKDMW----TWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAA---- 255 (466)
Q Consensus 187 ~~~gi~v~sS~DLv----~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~---- 255 (466)
+...|.++-|++.. +|+..|.|++...... .+..-|+.+++.+..+|+-.|||++... ....++
T Consensus 94 ~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~-----~~s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~ 168 (428)
T PF02435_consen 94 DDARIYLFYSKDGDNANDGWKNGGPVFPEGASFV-----PGSREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATA 168 (428)
T ss_dssp CGEEEEEEEEETT--SGGG-EEEEESS-TTCCCC-----GCEEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEE
T ss_pred CCcEEEEEEecCCCCccCCceECcccCCCCCCCC-----ccCcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhH
Confidence 44578899888887 8999999998654300 2456799999996558999999987432 122233
Q ss_pred -EEEEEeCC----CCCCceeccccCCCC-----------CCccCceEEEc-CCCcEEEEEEecC----------------
Q 012300 256 -VGVAISDY----PTGPFDYLYSKRPHG-----------FDSRDMTIFKD-DDGVAYLVYSSED---------------- 302 (466)
Q Consensus 256 -IGVA~Sds----P~GPf~~~~~~~p~g-----------~~~iDp~vF~D-dDG~~YL~~g~~~---------------- 302 (466)
+|.+.+++ ..|.-....-+.+.| +..+||.+|+| .+|+.||+|.+..
T Consensus 169 ~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~ 248 (428)
T PF02435_consen 169 TLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGN 248 (428)
T ss_dssp EEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHH
T ss_pred hcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCcccccc
Confidence 44455554 222111111123333 46799999999 7999999998742
Q ss_pred -------------------CCcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECCEEEEEEeC-CCCC-----
Q 012300 303 -------------------NSELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLGTYYMVTSG-CTGW----- 353 (466)
Q Consensus 303 -------------------n~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~YYL~yS~-~tg~----- 353 (466)
|+.|-|++|+.+..+...-...|+ ....+|-|.|+++||+||||.+. ....
T Consensus 249 ~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL~~a~~v~de~ERP~iv~~~gkyYLFt~s~~~~~a~g~~ 328 (428)
T PF02435_consen 249 VPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPLLSANGVNDELERPHIVFMNGKYYLFTISHLSTFADGIV 328 (428)
T ss_dssp HHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEEEEETTTBS-EEEEEEEEETTEEEEEEEEEGGGBSTTHH
T ss_pred ccccccccccccccccceecceeeeEEecCCCCCccEEeCcceecccccccccCCcEEEECCEEEEEEEeccccccCCcc
Confidence 124778999887653322222332 34689999999999999999962 1111
Q ss_pred CCCcEEEEE-eCCCCCCceeC-CCccccCCc-cceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCC-CCe-eEEEE-
Q 012300 354 APNEALVHA-AESIMGPWEDM-GNPCIGGNK-VFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLR-ESR-YIWLP- 427 (466)
Q Consensus 354 ~~n~~v~~~-Sds~~GPw~~~-gnPi~~~~~-~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~-~~R-~v~lP- 427 (466)
.++...+.. ++++.|||+.. |.-++-+++ .-....+.+.++++++. | ...+|. +-+...+.. .++ ..+.|
T Consensus 329 g~d~~yg~~~~~~L~g~y~PLNgsGlVl~np~~~~p~~~qtYS~~~~p~-~--~v~sf~-~~~~~~~~~~~~~ggT~APt 404 (428)
T PF02435_consen 329 GPDGVYGFVVSDSLRGPYKPLNGSGLVLGNPPSQAPWRTQTYSHYVMPD-G--DVVSFI-DYMTNRGEVAYRFGGTFAPT 404 (428)
T ss_dssp TTSEEEEEEEESSTTS--EEGCCTSEEEEESTTSTTSTTCEEEEEEECC-S--CEEEEE-EEESSTTSSSTSECSEE-EE
T ss_pred CCCeEEEEEECccccCCceecCCCceEecCCCCCCCccceeeEEEEECC-C--cEEEEE-eccccccccccccCCeeCCe
Confidence 133344444 56699999987 443332222 10012255557888876 4 333333 333322222 122 26777
Q ss_pred --EEEcC
Q 012300 428 --LIVRG 432 (466)
Q Consensus 428 --l~~~~ 432 (466)
|.+++
T Consensus 405 ~~l~i~g 411 (428)
T PF02435_consen 405 FLLQING 411 (428)
T ss_dssp EEEEEET
T ss_pred EEEEEcC
Confidence 55666
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A .... |
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=126.11 Aligned_cols=213 Identities=21% Similarity=0.242 Sum_probs=129.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+++..|+||++|+.++..++... .+.+.. .+..|||.|... +-.+.+.|+ ...+-..+...-...-.|.
T Consensus 35 i~v~~S~DL~~W~~~g~~~~~~~---~~~~~~-~~~~WAP~i~~~---~g~yy~y~~----~~~~~~~~~~~va~a~~~~ 103 (286)
T PF04616_consen 35 IPVWSSKDLVNWTDAGNVLPPPP---DWDWAN-NGNIWAPEIHYI---NGKYYMYYS----DSGGDAGSGIGVATADSPD 103 (286)
T ss_dssp EEEEEESSSSSEEEEEECESSTT---TTSTTT-SETTEEEEEEEE---TTEEEEEEE----EESTSTTEEEEEEEESSTT
T ss_pred EEEEECCCCcccccceeeecccc---cccccc-cccccCCeEEEc---CCeEEEEEE----ccCCCCCcceeEEEeCCcc
Confidence 45677899999999998887752 122221 223399998866 667744444 1011111111111111244
Q ss_pred ceeeCCCCCe---EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEec-eeccCC
Q 012300 138 RIWLDTEGAP---IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEG-IVLAAE 212 (466)
Q Consensus 138 ~~w~dt~Gnp---I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g-~vL~~~ 212 (466)
.+|.+....+ ..+.|++|+.+++ |++||+-....... ....+.+.+ +.|+..+.... .++...
T Consensus 104 Gp~~~~~~~~~~~~~~iD~~vf~d~d-G~~Yl~~~~~~~~~-----------~~~~i~~~~l~~d~~~~~~~~~~~~~~~ 171 (286)
T PF04616_consen 104 GPWTDPGKIPIPGGNSIDPSVFVDDD-GKYYLYYGSWDNGD-----------PGGGIYIAELDPDGTSLTGEPVVVIFPG 171 (286)
T ss_dssp S-EEEEEEEEEESSSSSSEEEEEETT-SEEEEEEEESTTTS-----------SEEEEEEEEEETTTSSEEEEECEEEEEE
T ss_pred cccccccceeeccccccCceEEEecC-CCcEEeCcccCCCc-----------cceeEEeecccCccccccCccccccccc
Confidence 5665432111 1357899998864 77877765432110 012344444 56777777766 333222
Q ss_pred CcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--------CCCCccCc
Q 012300 213 ETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--------HGFDSRDM 284 (466)
Q Consensus 213 ~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--------~g~~~iDp 284 (466)
.. ......+++|.+++ ++|+|||+|+...... ..++++|+|++|.|||+......+ .....-..
T Consensus 172 ~~-----~~~~~~~Egp~~~k--~~g~yYl~~s~~~~~~-~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~gH~ 243 (286)
T PF04616_consen 172 DE-----GWDGGVVEGPFVFK--HGGKYYLFYSAGGTGS-PYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGPGHG 243 (286)
T ss_dssp SG-----SSTTTBEEEEEEEE--ETTEEEEEEEESGSST-TTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEEEEE
T ss_pred cc-----ccCCccccceEEEE--cCCCEEEEEeccCCCC-CceEEEeeccCCCCceeeccCCeEEEeeccCCccccCccC
Confidence 21 12356799999996 8999999999765443 378999999999999997532111 11345678
Q ss_pred eEEEcCCCcEEEEEEec
Q 012300 285 TIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~ 301 (466)
++|+++||+.||+|...
T Consensus 244 ~~~~~~~g~~~~~yh~~ 260 (286)
T PF04616_consen 244 SVFKDPDGRWYIVYHAR 260 (286)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred CEEECCCCCEEEEEeec
Confidence 89999999999999875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=122.03 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=122.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcc-cccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRA-AKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~~~~i~ 135 (466)
+.+..|+||++||+++.+++.+. ..|.. ....+..|||.|... +..+.+.|+. .+.. .+...-...-.
T Consensus 33 i~~~~S~Dl~~W~~~g~~~~~~~--~~~~~~~~~~~~~WAP~v~~~---~g~yy~yy~~-----~~~~~~~~~~v~~s~~ 102 (288)
T cd09000 33 VPIFHSKDLVNWELIGHALTRPS--QLDLDGLPDSGGIWAPTIRYH---DGTFYLITTN-----VDGMKDGGNFIVTADD 102 (288)
T ss_pred ceEEECCCcCCcEEcccccCCcc--cccccCCCCCCceEcceEEEE---CCEEEEEEEe-----cCCCCCCceEEEEeCC
Confidence 56678999999999999997652 11210 013557899999877 6777666662 2210 11110111122
Q ss_pred cCceeeCCCCCeEEeeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece--eccCC
Q 012300 136 PGRIWLDTEGAPIQAHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--VLAAE 212 (466)
Q Consensus 136 pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~--vL~~~ 212 (466)
|..+|.+.--..-.+.|++++.++ +|+.|++ +.......+ ....++.+.+.+ ...|+..+. .+...
T Consensus 103 p~gpw~~~~~~~~~~iDp~vf~d~-dG~~Y~~~~~~~~~~~~---------~~~~~i~~~~l~-~~~~~~~~~~~~~~~~ 171 (288)
T cd09000 103 PAGPWSDPVWLDSGGIDPSLFFDD-DGKVYLVGNGWDERRGY---------NGHGGIWLQEID-LETGKLLGEPKVIWNG 171 (288)
T ss_pred CCCCCcCCEecCCCccCCceeEcC-CCCEEEEecccCCcccc---------CCCCcEEEEEEc-cccCCCCCCcEEEEeC
Confidence 555665311000035689998874 5776665 332111000 011345565543 233433221 11111
Q ss_pred CcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--c-C----CCC--CCccC
Q 012300 213 ETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--K-R----PHG--FDSRD 283 (466)
Q Consensus 213 ~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~-~----p~g--~~~iD 283 (466)
. ....+++|.|++ ++|+|||+|+..... ....+++|+|++|+|||++... . . ..+ ...-.
T Consensus 172 ~--------~~~~~Egp~v~k--~~g~YYl~ys~~~~~-~~~~v~~~~s~~~~Gp~~~~~~~~il~~~~~~~~~~~g~gH 240 (288)
T cd09000 172 T--------GGRWPEGPHLYK--RDGWYYLLIAEGGTG-YGHSVTVARSRSITGPYEPAPNNPILTNRDLPDSPIQATGH 240 (288)
T ss_pred C--------CCCCcccCeEEE--ECCEEEEEEecCCCC-CCeEEEEEEeCCCCCCCccCCCCceEEcCCCCCCcceeCCc
Confidence 0 124689999996 899999999864332 2368999999999999997421 1 0 011 13446
Q ss_pred ceEEEcCCCcEEEEEEec
Q 012300 284 MTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 284 p~vF~DdDG~~YL~~g~~ 301 (466)
.++|+++||+.|++|.+.
T Consensus 241 ~~~~~~~dG~~~~~yH~~ 258 (288)
T cd09000 241 ADLVQTPDGEWWAVFLAT 258 (288)
T ss_pred cceEECCCCCEEEEEEEE
Confidence 779999899999999864
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-11 Score=116.08 Aligned_cols=212 Identities=18% Similarity=0.141 Sum_probs=128.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
+.+..|.||++|+..+.+++..... +.+. ..+..|||.|... +-.+.+.|+.... +... ..+.+.
T Consensus 26 i~i~~S~Dl~~W~~~~~~~~~~~~~--~~~~-~~~~~waP~v~~~---~g~yyl~y~~~~~---~~~~----~~i~~a~s 92 (271)
T cd08978 26 VQVWSSKDLVNWRYEGAVFVAWRGR--GEAK-DSGGLWAPEVIYY---EGKYYLYYSVSDF---DYNG----SGIGVATS 92 (271)
T ss_pred EEEEECCccCCcEECCccccccccc--CCcc-cCCceeCCeEEEE---CCEEEEEEEcccC---CCCc----ccEEEEEC
Confidence 4556789999999999888632101 1222 2568999998877 5667566662211 0000 111111
Q ss_pred --cCceeeCC-----CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 136 --PGRIWLDT-----EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 136 --pg~~w~dt-----~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
|-+.|.+. ......+.|+.++.++ +|++||+-...... ....++.+.++++...|.....+
T Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~-dg~~yl~~~~~~~~-----------~~~~~i~~~~l~~~~~~~~~~~~ 160 (271)
T cd08978 93 EDPTGPFEDKVIRPPTSNNGNSIDPTVFKDD-DGKYYLYYGSGDPG-----------AGFGGIYISELTDDLTKPTGPPV 160 (271)
T ss_pred CCCCCCccccccCcCccCCCCccCcceEEcC-CCCEEEEEecccCC-----------CCCCcEEEEEECcccccccCCce
Confidence 22223221 0111124688998875 48888885532110 01245778887765554333222
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc------C-C-CCCC
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK------R-P-HGFD 280 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~------~-p-~g~~ 280 (466)
+.. +. ......+++|.+++ ++|+|||+|+..........+++|+|++|.|||+..... . . ....
T Consensus 161 ~~~----~~--~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~ 232 (271)
T cd08978 161 LSA----SS--GNNNAVTEGPTIFK--KNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVG 232 (271)
T ss_pred eee----ee--ccCCCceEccEEEE--ECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCcccc
Confidence 210 10 11345789999997 789999999986442245789999999999999975332 0 1 1235
Q ss_pred ccCceEEEcCCCcEEEEEEecC
Q 012300 281 SRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
....++|.+++|+.|++|....
T Consensus 233 ~gh~~~~~~~~g~~~~~yh~~~ 254 (271)
T cd08978 233 LGHGSVVRDKNGEWYLVYHAYN 254 (271)
T ss_pred CCCceEEECCCCCEEEEEEeec
Confidence 6788999988899999998753
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=121.51 Aligned_cols=200 Identities=16% Similarity=0.093 Sum_probs=116.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc-cCCCceeeec
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD-NGNDSFYYYP 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~-~~~~~~~i~p 136 (466)
+....|+||++||.++.++|.. .+..|||.|.+. +-.+.+.|+ +.+.... ...-+..-.|
T Consensus 40 i~i~~S~DL~~W~~~g~~~~~~-----------~~~~WAP~i~~~---~gkyy~yys-----~~~~~~~~~~~va~ad~p 100 (280)
T cd09002 40 LVIWHSRDLVNWTPVGPALPEY-----------EGDVWAPDLCKY---DGRYYIYFP-----AIPEGGNWTNMVIWADSP 100 (280)
T ss_pred EEEEECCCcCCceEccccccCC-----------CCCEEcCeeEEE---CCEEEEEEE-----eecCCCCceEEEEEECCC
Confidence 4556799999999999877652 346899998776 777745555 2221111 0111122235
Q ss_pred CceeeCCC-CCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCC-C-
Q 012300 137 GRIWLDTE-GAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE-E- 213 (466)
Q Consensus 137 g~~w~dt~-GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~-~- 213 (466)
..+|.+.- -+.-.+.|++++.++ +|++|||-.. . ..+--+.|+..-+.+...+... +
T Consensus 101 ~Gpw~~~~~~~~~~~IDp~vf~Dd-dG~~Yl~~~~--~-----------------~~~~l~~d~~~~~g~~~~~~~~~~~ 160 (280)
T cd09002 101 EGPWSKPIDLKIGGCIDPGHVVDE-DGNRYLFLSG--G-----------------DRVRLTADGLSTDGKLEHVYDGWRY 160 (280)
T ss_pred CCCCcCCEecCCCCccCCceEEcC-CCCEEEEECC--e-----------------eEEEECccccEecCcCEEEecCccc
Confidence 56676521 011114688988874 6899998321 0 0011133443222111111110 0
Q ss_pred -cccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecccc-----CC-C-C-CCcc
Q 012300 214 -TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSK-----RP-H-G-FDSR 282 (466)
Q Consensus 214 -~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~-----~p-~-g-~~~i 282 (466)
..|. ..+..++||.+++ ++|+|||+|+...... ....++||+|++|.|||++.... .. . + ...-
T Consensus 161 ~~~~~---~~~~~~Egp~~~k--~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~~~~g~G 235 (280)
T cd09002 161 PEDWV---VEGFALEGPKLKK--RNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQEPWWSKG 235 (280)
T ss_pred ccccc---cCCcccccceEEE--ECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCCCceeCC
Confidence 0111 1233589999996 8999999998643221 13568999999999999975311 00 0 1 1335
Q ss_pred CceEEEcCCCcEEEEEEec
Q 012300 283 DMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 283 Dp~vF~DdDG~~YL~~g~~ 301 (466)
..+||.++||+.|++|.+.
T Consensus 236 H~~i~~~~~g~~~~vyH~~ 254 (280)
T cd09002 236 HATLVDGPDGQWWMVYHAY 254 (280)
T ss_pred CCcEEECCCCCEEEEEEee
Confidence 7789998899999999864
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-11 Score=117.98 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=118.8
Q ss_pred ecCccccchhhhhhccccCCCCCC-CCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc--cCCCceee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRG-KRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD--NGNDSFYY 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~--~~~~~~~i 134 (466)
+.+..|+||++||.++.+++.+.. .....+. ..+..|||.|... +-.+.+.|+.. +.... ...-+.+-
T Consensus 22 i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~-~~~~~wAP~v~~~---~g~yyl~ys~~-----~~~~~~~~i~va~s~ 92 (288)
T cd08998 22 IAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPG-GSGNLWAPDVIYL---NGKYYLYYSVS-----TFGSNRSAIGLATSD 92 (288)
T ss_pred eEEEECCCCCCcEECCccccCCCccccccccC-CCCCccCCeEEEE---CCEEEEEEEEE-----eCCCCceEEEEEEeC
Confidence 456789999999999999877621 0001122 2568999988776 66665555521 11100 00000111
Q ss_pred ec-CceeeCCC-------C-CeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCC---CCC
Q 012300 135 YP-GRIWLDTE-------G-APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKD---MWT 201 (466)
Q Consensus 135 ~p-g~~w~dt~-------G-npI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~D---Lv~ 201 (466)
.| -.+|.+.. + +...+.|+.|+.++ +|++||+-.... .++.+.+ +.| .+.
T Consensus 93 ~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~-dG~~Yl~~~~~~----------------~~i~~~~l~~~~~~~~~ 155 (288)
T cd08998 93 TLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDE-DGKLWLSFGSFW----------------GGIFLVELDPKTGKPLY 155 (288)
T ss_pred CCCCCCCEEcceeeecCCCCCCcccccCCEEEcC-CCCEEEEeeecc----------------CCEEEEEeCcccCCccC
Confidence 12 23454321 0 11235688998874 688888743211 1222322 222 123
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccC--C
Q 012300 202 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKR--P 276 (466)
Q Consensus 202 W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~--p 276 (466)
|...+..+..... ....+++|.+++ ++|+|||+|+..... ....+++||+|++|.|||++..... .
T Consensus 156 ~~~~~~~i~~~~~-------~~~~~Egp~~~k--~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~~~ 226 (288)
T cd08998 156 PGGYGYNIAGRPR-------GHGAIEAPYIIY--RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDMLN 226 (288)
T ss_pred CCCcceEEeccCC-------CCCceeeeEEEE--eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCchhh
Confidence 3211221211110 134689999996 899999999864321 2356899999999999999642110 0
Q ss_pred ----------C-C-CCccCceEEEcCCCcEEEEEEec
Q 012300 277 ----------H-G-FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 277 ----------~-g-~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
. + ......++|+++||+.||+|...
T Consensus 227 ~~~~~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~~ 263 (288)
T cd08998 227 GGGTLYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHYY 263 (288)
T ss_pred CCCcceeeccCCeEEcCCCCEEEECCCCCEEEEEEEE
Confidence 0 1 12357799999899999999875
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=118.86 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=119.6
Q ss_pred cCccccchhhhhhccccCCCCCCCCCCccc----ccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee
Q 012300 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAA----KRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY 134 (466)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i 134 (466)
.+..|+||++||..+.+++.. |.+. ...+..|||.|.+. +-.+.+.|+.... .... ...-+..-
T Consensus 34 ~~~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~WAP~v~~~---~G~yy~yy~~~~~---~~~~-~i~va~sd 101 (269)
T cd08989 34 QIHHSTDLVNWHLIGHPLDRL-----EDLDMKGNPYSGGIWAPCLSYY---DGKFWLIYTAVKV---WKDC-HNYLFTAE 101 (269)
T ss_pred EEEECCccCCCEEccccccCc-----cccccccCCCCCcEEcceEEEE---CCEEEEEEecccc---CCCc-eEEEEEEC
Confidence 457899999999999888654 2221 11457899999887 7778666662211 0000 01011111
Q ss_pred ecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEeceeccCCC
Q 012300 135 YPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIVLAAEE 213 (466)
Q Consensus 135 ~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~vL~~~~ 213 (466)
.|..+|.+.-.....+.|++++.|+ +|+.||+... | .++.+.+ +.|+..-...... .
T Consensus 102 ~~~Gpw~~~~~~~~~~IDp~~f~D~-dG~~Yl~~~~---------~--------~~i~l~~l~~~~~~~~~~~~~----~ 159 (269)
T cd08989 102 DITGPWSRPIFLNYGGFDPSLFHDD-DGKKYLINMG---------W--------SGIRLQEYSPAEKKLIGKPLN----K 159 (269)
T ss_pred CCCCCCcCCEECCCCcccCceEEcC-CCCEEEEecC---------C--------CcEEEEEEChhhCCCCCCcee----E
Confidence 3556676521111235789988874 6888887321 1 1233433 2232211110000 0
Q ss_pred cccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC------CCC--CCccCce
Q 012300 214 TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR------PHG--FDSRDMT 285 (466)
Q Consensus 214 ~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~------p~g--~~~iDp~ 285 (466)
..+. ......+++|.+++ ++|+|||+++.....+ ...++||+|++|.|||++..... +.+ ...-..+
T Consensus 160 ~~~~--~~~~~~~Egp~~~k--~~G~YYl~~S~~~~~~-~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~~~~~~g~GH~s 234 (269)
T cd08989 160 VIIK--GTDDGLTEGPHLYK--INGKYYLTTAEGGTGY-IHEETIARSDKIHGPYEGRPDNPLVLWDTPGNPLQKCGHAS 234 (269)
T ss_pred EEec--CCCCCccccceEEE--ECCEEEEEEeeCCCCC-CeeEEEEEECCCCCCCCcCCCCcceeecCCCCCcccCCCcC
Confidence 0000 01234689999996 8999999999754332 34789999999999999754310 111 2345678
Q ss_pred EEEcCCCcEEEEEEec
Q 012300 286 IFKDDDGVAYLVYSSE 301 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~ 301 (466)
+|+++||+.|++|...
T Consensus 235 ~v~~~~G~~~~~~h~~ 250 (269)
T cd08989 235 LVETPDGKWYLAHLTG 250 (269)
T ss_pred eEECcCCCEEEEEEee
Confidence 8998899999999864
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=119.40 Aligned_cols=200 Identities=14% Similarity=0.018 Sum_probs=119.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCC-CCcccc---cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCcee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKR-SPRAAK---RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFY 133 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~p~~~~---~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~ 133 (466)
+....|.||++||..+.+++.+.... .+.|.+ ..+..|||.|... +-.+.+.|+. .+....+ ...
T Consensus 36 i~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~~~---~gkyy~yys~-----~~~~~~v---~~a 104 (269)
T cd09001 36 APILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLRYH---NGTFYVFFCT-----NTGGTYI---YTA 104 (269)
T ss_pred CEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceEEE---CCEEEEEEEe-----cCCCeEE---EEc
Confidence 44567999999999998886541000 011211 1346899999887 6677555552 1111111 111
Q ss_pred eecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-eccC
Q 012300 134 YYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-VLAA 211 (466)
Q Consensus 134 i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-vL~~ 211 (466)
-.|-.+|.+.. ....+.|+++..|+ +|+.||+-.. .++.+.+ +.|+........ ++..
T Consensus 105 ~~p~Gpw~~~~-~~~~~iDp~~f~D~-dG~~Yl~~~~------------------~~i~~~~l~~d~~~~~~~~~~~~~~ 164 (269)
T cd09001 105 DDPEGPWTKTA-LDGGYHDPSLLFDD-DGTAYLVYGG------------------GTIRLVELSPDLTGVGGKDQVIIDA 164 (269)
T ss_pred CCCCCCCcCCC-cCCCcccCceEEcC-CCCEEEEeCC------------------CcEEEEEECcccCCcCCCceEEEeC
Confidence 23556776532 11145688888875 6777776321 0233333 567766633222 2222
Q ss_pred CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-CC-C-CCccCceEEE
Q 012300 212 EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-PH-G-FDSRDMTIFK 288 (466)
Q Consensus 212 ~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-p~-g-~~~iDp~vF~ 288 (466)
... ....++||.+++ ++|+|||+|+... .....++||+|++|.|||+...... +. . ......++|.
T Consensus 165 ~~~-------~~~~~Egp~i~k--~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~~~~~~~~~~~~~~~~~gh~~~~~ 233 (269)
T cd09001 165 GEE-------IGLGAEGSHLYK--INGYYYIFNIAWG--GGGRTQTCLRSKSLTGPYESKVVLEDGSTGGNGPHQGGIVD 233 (269)
T ss_pred CCc-------cccccccCeEEE--ECCEEEEEEecCC--CCCceEEEEEeCCCCCCcCCcceecCCCCCCCCCCCEEEEE
Confidence 111 135689999996 8999999999754 1235788999999999999753221 11 1 1234456888
Q ss_pred cCCCcEEEEEE
Q 012300 289 DDDGVAYLVYS 299 (466)
Q Consensus 289 DdDG~~YL~~g 299 (466)
++||+.|+++.
T Consensus 234 ~~~G~~~~~~~ 244 (269)
T cd09001 234 TPDGEWYFMLF 244 (269)
T ss_pred CCCCCEEEEEc
Confidence 88999887765
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08982 GH43_3 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-10 Score=114.90 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=111.2
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC-c
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG-R 138 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg-~ 138 (466)
+..|+||++||..+.++. .+..|||.|... +-.+...++.+ ...+. ..-.|- .
T Consensus 25 i~~S~DL~~W~~~g~~~~-------------~~~~WAP~i~~~---~g~~Y~~~~~~-------~~~v~---~s~~p~gp 78 (295)
T cd08982 25 YWHSSDLIDWDFIPTNSL-------------PDEGYAPAVFVY---DGTLYYTASTY-------NSRIY---KTADPLSG 78 (295)
T ss_pred eEECCCcCCceECCcccC-------------CCCcCcCEEEEE---CCEEEEEEeCC-------CceEE---EeCCCCCC
Confidence 467999999999997653 347899999887 44443333311 11111 111232 2
Q ss_pred eeeCC-CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-ecc--CCC
Q 012300 139 IWLDT-EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-VLA--AEE 213 (466)
Q Consensus 139 ~w~dt-~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-vL~--~~~ 213 (466)
.|.+. ......+.|++++.++ +|+.|++-..... .++.+.+ +.|+..-..+.. ++. ..+
T Consensus 79 ~w~~~~~~~~~~~IDp~vf~Dd-DGk~Yl~~g~~~~---------------~~i~~~eL~~d~~~~~g~~~~l~~~~~~~ 142 (295)
T cd08982 79 PWEEVDKSFPPGLADPALFIDD-DGRLYLYYGCSNN---------------YPLRGVEVDPDTFRPIGEPVELIPGNPDK 142 (295)
T ss_pred CccccccccCCCccCCceEECC-CCCEEEEEecCCC---------------CCeEEEEECcccCCccCcceEEEeCCCCC
Confidence 35442 1122346789998874 5777777422110 0122212 222221111111 111 111
Q ss_pred cccccc------cCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC----CCC--CCc
Q 012300 214 TNETHD------LYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR----PHG--FDS 281 (466)
Q Consensus 214 ~~~~~~------~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~----p~g--~~~ 281 (466)
..|... ......+++|.+++ ++|+|||+|++........+++||+|++|.|||+...... +.+ ...
T Consensus 143 ~~We~~g~~~~~~~~~~~~EGP~i~k--~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~ 220 (295)
T cd08982 143 HGWERFGENNDNPDKTPWMEGAWMTK--HNGKYYLQYAAPGTEFNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGA 220 (295)
T ss_pred cCeEecCcccccccCCccccccEEEE--ECCEEEEEEeCCCcccCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecC
Confidence 112110 00134689999996 8999999998754333456899999999999999754211 111 124
Q ss_pred cCceEEEcCCCcEEEEEEec
Q 012300 282 RDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~ 301 (466)
...++|++.||+.|++|...
T Consensus 221 GH~s~v~~~~G~~~~~yh~~ 240 (295)
T cd08982 221 GHGSTFQDKYGNYWHVGTMT 240 (295)
T ss_pred CcccEEECCCCCEEEEEEEE
Confidence 56779999999999998643
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=111.85 Aligned_cols=210 Identities=13% Similarity=0.069 Sum_probs=124.5
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 56 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
.-.++..|+||++||.++.+|++... ..+.|. ....|+|.|..... +-.+ .||+.... .+-.....+-+..-.
T Consensus 30 ~gi~~~sS~DLvnW~~~g~vl~~~~~-~~~~~~--~~~~waP~v~y~~~-~g~Y-~m~~~~~~--~~~~~~~igvA~Sd~ 102 (265)
T cd08985 30 GGVSCYSSTDLVNWTFEGLALTPEED-SADLGP--GRIIERPKVIYNAK-TGKY-VMWMHIDS--SDYSDARVGVATSDT 102 (265)
T ss_pred ccEEEEECCCCccceECceecccccc-cccccc--CcEEECCeEEEeCC-CCEE-EEEEEeCC--CCCcceeEEEEEeCC
Confidence 44678889999999999999987621 112333 44789998776521 3455 55552211 000011111122223
Q ss_pred cCceeeCCCC-C--eEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEeceeccC
Q 012300 136 PGRIWLDTEG-A--PIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIVLAA 211 (466)
Q Consensus 136 pg~~w~dt~G-n--pI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~vL~~ 211 (466)
|-.+|.+... . ...+.|+++..|+ +|++||+-.... ..++.+.+ ++|+..+......+.
T Consensus 103 p~Gpf~~~~~~~~~~~~~~Dp~vf~Dd-DG~~Yl~~~~~~---------------~~~i~i~~L~~d~~~~~~~~~~~~- 165 (265)
T cd08985 103 PTGPYTYLGSFRPLGYQSRDFGLFVDD-DGTAYLLYSDRD---------------NSDLYIYRLTDDYLSVTGEVTTVF- 165 (265)
T ss_pred CCCCCEECCccCCCCCCccCCceEEcC-CCCEEEEEecCC---------------CCceEEEEeCCCcccccceEEEcc-
Confidence 6667765221 1 1225688988875 567777654221 12344544 468887765433211
Q ss_pred CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccC---ceEEE
Q 012300 212 EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRD---MTIFK 288 (466)
Q Consensus 212 ~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iD---p~vF~ 288 (466)
....++||.|++ ++|+|||+++... .+....+.+|+|++|.|||+..+...+.+..+.+ ..|+.
T Consensus 166 ----------~~~~~EaP~i~K--~~g~YYL~~S~~t-~~~~~~~~y~~s~s~~GP~~~~~~~~~~~~~t~~sq~~~v~~ 232 (265)
T cd08985 166 ----------VGAGREAPAIFK--RNGKYYLLTSGLT-GWNPNDARYATATSILGPWTDLGNPGPGGSTTYGSQTTFVLP 232 (265)
T ss_pred ----------CCCccccceEEE--ECCEEEEEEccCC-CccCCceEEEEecCCCCCccccCcCCCCCCcEECCCcceEEE
Confidence 235689999996 8999999998642 2234568999999999999987644333333333 33443
Q ss_pred cC--CCcEEEEEEecC
Q 012300 289 DD--DGVAYLVYSSED 302 (466)
Q Consensus 289 Dd--DG~~YL~~g~~~ 302 (466)
-. .++.||+++...
T Consensus 233 ~~g~~~~~~~~~~drw 248 (265)
T cd08985 233 VPGSKQTTYIYMGDRW 248 (265)
T ss_pred eCCCCCCEEEEEEccc
Confidence 22 238899998643
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-10 Score=114.06 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=103.7
Q ss_pred EEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc----cCCC
Q 012300 55 LHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD----NGND 130 (466)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~----~~~~ 130 (466)
.+.+.+..|+||++|++.+.+|++.. ...|.+ ..+|+|.|-+. +..+.+.|+ +...+... ..+-
T Consensus 78 ~y~I~~A~S~Dgv~W~~~g~~L~~~~---~g~Wd~--~~vwaP~Vi~~---dGkyYM~Ys----a~~~~~~~~~~~~IGv 145 (349)
T cd08992 78 KCEIWHATSKDGWTWKEEGPAIGRGE---KGAYDD--RSVFTPEVLEH---EGTYYLVYQ----VVKSPYLNRSFESIAM 145 (349)
T ss_pred ceEEEEEECCCCCCceECCccccCCC---CCCccc--cceECcEEEEE---CCEEEEEEE----ecccccCCCCcceEEE
Confidence 44566789999999999997775431 124764 46999988876 777867766 11111110 0111
Q ss_pred ceeeecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe---ce
Q 012300 131 SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE---GI 207 (466)
Q Consensus 131 ~~~i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~---g~ 207 (466)
+..-.|-+.|.+ .++||++ -.+...|... +.
T Consensus 146 A~AdSp~GpWtr-~d~Pil~---------------------------------------------p~~dg~w~~d~~~~~ 179 (349)
T cd08992 146 AVADSPYGPWTK-SDEPILS---------------------------------------------PSNDGIWKGDEDNRF 179 (349)
T ss_pred EEECCccccccc-CCCcEec---------------------------------------------CCcCCceeeccCcee
Confidence 111112223332 1233321 1112233321 12
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC------CCcceEEEEEeCCCCCCceeccccCCCCCCc
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN------YTKAAVGVAISDYPTGPFDYLYSKRPHGFDS 281 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~------~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~ 281 (466)
++... .. ++...+++|.|++ .+|+|||||+++..+ ....+||||+|++|+|||+.... .|.-...
T Consensus 180 ~~~~~-g~-----wD~~~v~~P~v~~--~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~-nPi~~~~ 250 (349)
T cd08992 180 LVKKK-GS-----FDSHKVHDPCLFP--FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPY-NPITNSG 250 (349)
T ss_pred EeccC-CC-----cccCceECCEEEE--ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCC-CcccCCC
Confidence 22211 11 2456799999997 799999999886421 23578999999999999997532 2221112
Q ss_pred cCceEEEcCCCcEEEEEEe
Q 012300 282 RDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~ 300 (466)
-..+|+.+.||-++|+-..
T Consensus 251 ~~~~~~~~~~~~~~~~~~d 269 (349)
T cd08992 251 HETCVWQYKGGIAAMLTTD 269 (349)
T ss_pred CceEEEecCCceEEEEecc
Confidence 2357888777777777654
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-09 Score=103.58 Aligned_cols=217 Identities=13% Similarity=0.126 Sum_probs=120.3
Q ss_pred ecCccccchhhhhhccccCC-CCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee--
Q 012300 58 SHNPSFRELVEVEEENIQIP-PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-- 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i-- 134 (466)
+....|+||++|+.++..++ .+ +.+....+..|||.|... +-.+.+.|+..... ....+...-...-
T Consensus 23 ~~i~~S~dl~~w~~~~~~~~~~~-----~~~~~~~~~~WAP~i~~~---~g~yylyys~~~~~--~~~~~~~~v~~a~~~ 92 (288)
T cd08980 23 IELRRSDTLAGLATAESKVVWTP-----PDSGPYSGNLWAPELHYI---DGKWYIYFAAGDGG--GNANHRMYVLENAGA 92 (288)
T ss_pred EEEEecCChhHhhcCCcEEEecC-----CCCCCccccEECceEEEE---CCEEEEEEEccCCC--CCcceeEEEEEeCCC
Confidence 34677999999998864322 11 111112457899999766 66775555511100 0000000000001
Q ss_pred -ecCceeeCCCCCe-----EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 135 -YPGRIWLDTEGAP-----IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 135 -~pg~~w~dt~Gnp-----I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
.|-.+|.+. +.. ..+.|++++.++ |++|++-....... ....++.+.+.+|...+..+..+
T Consensus 93 ~~~~Gpw~~~-~~~~~~~~~~~iDp~~~~dd--G~~Yl~~~~~~~~~----------~~~~~i~~~~l~~~~~~~g~~~~ 159 (288)
T cd08980 93 DPPTGPWTFK-GRLADPTDRWAIDGTVFEHN--GQLYFVWSGWEGRT----------NGNQNLYIAKMSNPWTLTGPRVL 159 (288)
T ss_pred CCCCCCceEe-eEeccCCCCeeeeeEEEEEC--CEEEEEEEccCCCC----------CCCccEEEEECCCCCccCCcceE
Confidence 144566653 111 124688888763 88887754322100 01234556666554455534444
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC---CCC--ceeccc-c---CC--C
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP---TGP--FDYLYS-K---RP--H 277 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP---~GP--f~~~~~-~---~p--~ 277 (466)
+...+..|.. .....++||.+++ ++|+|||+|++........+++||+++++ .|| |+..+. . .. .
T Consensus 160 i~~p~~~we~--~~~~~~EgP~~~k--~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil~~~~~~~ 235 (288)
T cd08980 160 ISRPEYDWER--QGPGVNEGPAALK--RNGKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKSPTPVFQSSPENG 235 (288)
T ss_pred ecCCCCCcee--cCceeeECcEEEE--ECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCCCCCceecCCCCc
Confidence 4433333321 1124689999997 88999999997654234578999998854 555 443221 1 01 1
Q ss_pred CCCccCceEEEcCCCc-EEEEEEec
Q 012300 278 GFDSRDMTIFKDDDGV-AYLVYSSE 301 (466)
Q Consensus 278 g~~~iDp~vF~DdDG~-~YL~~g~~ 301 (466)
-......++|+++||+ .||+|.+.
T Consensus 236 ~~g~GH~~iv~~~~G~~~~~~yH~~ 260 (288)
T cd08980 236 VYGPGHNSFTKSPDGTEDWIVYHAR 260 (288)
T ss_pred cCcCCccceEECCCCCEEEEEEccc
Confidence 1234688899999998 99999875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-09 Score=102.75 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 56 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
...++..|+||++||..+.++|+. ..+.+. .+..++|-|.... +-.+.+.|+ + .+.. ......+.+.
T Consensus 33 ~~~~~a~S~D~~~w~~~~~~l~~~---~~~~~~--~~~~~~p~v~~~~--dg~~~~~Yt-~----~~~~-~~~~~~i~~A 99 (276)
T cd08979 33 SRIGAASSDDGTWWTRPPAPLPPG---PPGSFD--DGGVWTPSVVRDP--DGTYRMFYT-G----YDRP-KGAVQRIGLA 99 (276)
T ss_pred ceeEEEEcCCCCccEECCcCccCC---CCCchh--cCCeEcceEEEcC--CCeEEEEEe-c----ccCC-CCCcceEEEE
Confidence 346889999999999999888332 113333 4578889766552 255644554 2 1110 0000111111
Q ss_pred ---cCceeeCCCCCe---------------EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeC
Q 012300 136 ---PGRIWLDTEGAP---------------IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSK 197 (466)
Q Consensus 136 ---pg~~w~dt~Gnp---------------I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~ 197 (466)
.+..|.....++ ....||.|++++++|+|||+-+.... .....+.+++|+
T Consensus 100 ~S~D~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~------------~~~~~i~~a~S~ 167 (276)
T cd08979 100 TSKDLIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDA------------DERGAIGLATSP 167 (276)
T ss_pred ECCCCCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEcc------------CCCcEEEEEECC
Confidence 223343322222 12368999988666999998664321 012458899999
Q ss_pred CCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeC
Q 012300 198 DMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD 248 (466)
Q Consensus 198 DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~ 248 (466)
||++|+..+.++... ..+ ....+++|.+++ .+|+|||+|+...
T Consensus 168 D~~~W~~~~~~~~~~-~~~-----~~~~~e~P~~~~--~~g~~~l~~~~~~ 210 (276)
T cd08979 168 DLIHWTPVPPPPGPR-TGY-----DDGQLEVPQVVK--IDGRWYLLYSGRN 210 (276)
T ss_pred CCCcceECCCCCCCC-Ccc-----cCCcCccceEEE--ECCEEEEEEEecC
Confidence 999999988653111 111 245689999996 7899999999764
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=103.92 Aligned_cols=205 Identities=17% Similarity=0.219 Sum_probs=124.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
.-|..|+||+||++.+.+|+|. .... .+..|++-+-.- ++..+.+.|| +.... +... .....+.+.
T Consensus 34 wgha~S~Dlv~W~~~~~al~p~------~~~d-~~g~~sGsav~~--~~g~~~~~YT-g~~~~-~~~~-~~~~~lA~S~d 101 (298)
T cd08996 34 WGHATSKDLVHWEHLPVALAPD------DPYD-SGGCFSGSAVVD--DNGKLVLFYT-GNVKL-DGGR-RQTQCLAYSTD 101 (298)
T ss_pred EEEEEecCccceeECCcccCCC------Cccc-CCeEEeCeEEEc--CCCcEEEEEe-ceeCC-CCCc-eEEEEEEEEcC
Confidence 4469999999999999999763 2222 345677754432 2255656666 11100 0000 111111222
Q ss_pred cCceeeCCCCCeEE---------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 136 PGRIWLDTEGAPIQ---------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 136 pg~~w~dt~GnpI~---------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
.+..|.....+|+. .+||.|++++ |+|||+-+.... .....+.+|+|+||.+|+..+
T Consensus 102 dg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~--g~~~m~~g~~~~------------~~~~~i~ly~S~Dl~~W~~~~ 167 (298)
T cd08996 102 DGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD--GKWYMVLGAGTE------------DGTGRILLYRSDDLKNWEYLG 167 (298)
T ss_pred CCCEEEECCCCceEcCCCCCCCcccCCeEEeEC--CEEEEEEEEEec------------CCCcEEEEEECCCCCCCEEcc
Confidence 57778776667765 2699999875 899998664321 012468899999999999988
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccC--CEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecc-c--cCCCCC
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRT--GKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLY-S--KRPHGF 279 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~--GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~-~--~~p~g~ 279 (466)
.+..... ..+...++|+++. .+ |+|||+|+...... ......+++.+-..+.|+... . ....|.
T Consensus 168 ~~~~~~~-------~~~~~~EcP~l~~--l~~~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~~~~~~~~~~~~~~lD~G~ 238 (298)
T cd08996 168 ELLTSLG-------DFGYMWECPDLFP--LDVEGKWVLIFSPQGLEPEGNGSGTGYLVGDFDGTTFTFDHTEFGELDYGF 238 (298)
T ss_pred eecccCC-------CccceEeCCcEEE--ECCCCeEEEEECCCCCCCCCCccceEEEEEEEECCCCeEecCCceEecCCC
Confidence 7641111 1245678999996 77 99999998764321 224455666654445665421 1 112345
Q ss_pred CccCceEEEcCCCcEEEE
Q 012300 280 DSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 280 ~~iDp~vF~DdDG~~YL~ 297 (466)
...=|..|.|++|+..|+
T Consensus 239 dfYA~q~~~~~~~r~i~~ 256 (298)
T cd08996 239 DFYAPQTFVDPDGRRILI 256 (298)
T ss_pred CeEeCceeeCCCCCEEEE
Confidence 566677888877776554
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-09 Score=103.22 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=117.3
Q ss_pred EecCccccc-hhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 57 ISHNPSFRE-LVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
.+.+..|.| |++|+..+..+.+. +.|. ....|||.|-.+ +..+.+.|+-..+. +........+...
T Consensus 48 ~i~~a~S~D~l~~W~~~g~~~~~~-----~~~~--~~~~WAP~v~~~---~G~y~myys~~~~~---~~~~~~~~~i~~a 114 (294)
T cd08984 48 DIGVASSKDGGATWTYRGTADGLE-----FECG--RNTFWAPEVVWH---GGVYHMYVTYIPGV---PPDWGGPRRIVHY 114 (294)
T ss_pred eEEEEEeCCCCCCCEEeeeeccCC-----CCCc--ccceeCceEEEE---CCEEEEEEEecCCC---CcccCCCcEEEEE
Confidence 356788999 99999998655332 3454 335899998777 67774544411111 0000000111111
Q ss_pred cC---ceeeCCCCCe-E---EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 136 PG---RIWLDTEGAP-I---QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 136 pg---~~w~dt~Gnp-I---~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
.+ ..|... +.. + .+-|++++.+ ++|+||||-+.... ...+.+..|+||.+|+..+.+
T Consensus 115 ~S~Dl~~w~~~-~~~~~~~~~~iD~~vf~~-~dg~~yl~y~~~~~--------------~~~~~~a~s~D~~~w~~~~~~ 178 (294)
T cd08984 115 TSPNLWDWTFV-GRVDLDSDRVIDACVFKL-PDGRWRMWYKDERR--------------GSTTYAADSEDLYHWTVEGPV 178 (294)
T ss_pred ECCCcCcceEC-CccccCCCCcEEeEEEEe-CCCEEEEEEECCCC--------------CeEEEEEECCCCCEEEeCCcc
Confidence 11 224321 111 1 1246777765 36899999874321 123567789999999987655
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC-------CCCCc
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP-------HGFDS 281 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p-------~g~~~ 281 (466)
+.. ...+.|.|++ .+|+|||++.. ...+++++|+++. +|++.+.... .+...
T Consensus 179 i~~------------~~~EgP~v~k--~~g~yym~~~~------~~g~~~~~S~D~~-~W~~~~~~l~~~~~~~~~~~~~ 237 (294)
T cd08984 179 LGD------------RPHEGPNVFR--WKGYYWMIIDE------WKGLGVYRSKDAE-NWERQGGILLKPGTRPDDGAKG 237 (294)
T ss_pred ccC------------CCCCCCCeeE--ECCEEEEEEcC------CceEEEEECCChh-hcEECCeeeccCCCCccccccc
Confidence 431 1126799996 78999998632 1358899999998 9998653211 13345
Q ss_pred cCceEEEcCCCcEEEEEEec
Q 012300 282 RDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~ 301 (466)
..++||+.+ |+.||+|...
T Consensus 238 ~H~~i~~~~-~~~y~~Yh~~ 256 (294)
T cd08984 238 RHADVVVTG-DRAYIFYFTH 256 (294)
T ss_pred cCCcEEEeC-CEEEEEEEec
Confidence 678999754 6999999864
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-08 Score=98.14 Aligned_cols=178 Identities=19% Similarity=0.235 Sum_probs=108.2
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccC---CCCCCccCceEEEcC-CCcEEE
Q 012300 224 NVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKR---PHGFDSRDMTIFKDD-DGVAYL 296 (466)
Q Consensus 224 ~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~---p~g~~~iDp~vF~Dd-DG~~YL 296 (466)
..+=-|.|++.+.+|+|||+++.... ......|.++.|++. -.|+..+... +.....-.|.+|.|+ +|++||
T Consensus 16 ~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DL-v~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~~ 94 (276)
T cd08983 16 KGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDL-VNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYVV 94 (276)
T ss_pred CCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcc-cCCcccceeecCCCCcCcEeCccceEcCCCCeEEE
Confidence 34556999985468999999986531 113467999999985 4788654321 112234589999985 899999
Q ss_pred EEEecCC------CcEEEEEcC-CCCCCccccEEEee-cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCC
Q 012300 297 VYSSEDN------SELHIGPLT-SDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMG 368 (466)
Q Consensus 297 ~~g~~~n------~~i~i~~Ls-~D~~~~~g~~~~i~-~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~G 368 (466)
+|+.... ....+.-.+ .|+.+++.. ..++ .+...=-+.||+.+|+|||+|..... .....++|+++.|
T Consensus 95 ~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p-~~~~~~~~~~ID~~v~~~~g~~Yl~~k~~~~---~~i~~~~s~~l~g 170 (276)
T cd08983 95 YWSSRLYDNTGGFYNYRLYATTTSDFVTFTEP-KVWIDLGANVIDTTVVKVGGTYYRFYKNEGS---KDIELARSKSLTG 170 (276)
T ss_pred EEecccCCCCCCCccEEEEEEecCcccccCCC-eEeecCCCCeEeeEEEEeCCEEEEEEecCCC---CcEEEEEeCCCCC
Confidence 9987421 122222223 477766543 2222 22222344799999999999986431 2334457999999
Q ss_pred CceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeC
Q 012300 369 PWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN 414 (466)
Q Consensus 369 Pw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~ 414 (466)
||+.....+...+ ...-+..|++..+...||||+ |.+.
T Consensus 171 ~~~~~~~~~~~~~-------~~~EgP~v~k~~~~~~y~L~~-d~y~ 208 (276)
T cd08983 171 PWTIVGTGDAGWG-------GAVEGPTVFKLNNGGGWYLYG-DNYS 208 (276)
T ss_pred CceEecccccCCC-------CceeCCeEEEECCCCEEEEEE-EECC
Confidence 9998754322111 111223577776543555554 5554
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-08 Score=100.40 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=112.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCcc--CCCCC--cc--C-C-
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA--IDPMK--DN--G-N- 129 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~--~dp~~--~~--~-~- 129 (466)
+.|..|+||++|++.+..+|+ .+.. +...|++-+-. ..+..+.+.|| +.... ...+. .. . .
T Consensus 43 wgh~~S~dlv~W~~~~~l~p~-------~~~d-~~g~wSGsa~~--~~dg~~~lfYT-g~~~~~~~~~~~~Q~ia~a~~~ 111 (349)
T cd08997 43 IGYFYSRAGGNWIDGGKVFPD-------GLSP-GSREWSGSATL--DDDGTVQLFYT-AVGRKGEPQPTFTQRLALARGT 111 (349)
T ss_pred EEEEEeCCCCcccCCCccCCC-------Cccc-CCCeEcceEEE--eCCCeEEEEEe-ccccCCCCCCCceEEEEEEECC
Confidence 668899999999998877774 3444 34777774333 22456745555 32110 01000 00 0 0
Q ss_pred -----------CceeeecCceeeCC--------CCCeEE-eeCCceEEECCCCEEEEEEEeCCCCC-cc-----------
Q 012300 130 -----------DSFYYYPGRIWLDT--------EGAPIQ-AHGGGILYDERSRTYFWYGEYKDGPT-YH----------- 177 (466)
Q Consensus 130 -----------~~~~i~pg~~w~dt--------~GnpI~-ahd~~Ii~~~~~g~YYlygT~~~~~~-~~----------- 177 (466)
....+.+-..+..+ .++.+. -+||.+++++++|++||+-+...+.. ..
T Consensus 112 ~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~ 191 (349)
T cd08997 112 LSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRV 191 (349)
T ss_pred CcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccccc
Confidence 11112222222221 112222 37999999887788888776543211 00
Q ss_pred ----cccc-ccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC-
Q 012300 178 ----AHKK-AAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY- 251 (466)
Q Consensus 178 ----~~~~-g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~- 251 (466)
.... .....+..|+.++.|+||.+|+..+..+..... ...+++|+++. .+|+|||+++.....+
T Consensus 192 ~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v--------~d~~E~P~v~~--~~gk~yL~~s~~~~~~~ 261 (349)
T cd08997 192 LPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGV--------NDELERPHVVF--HNGKYYLFTISHRSTFA 261 (349)
T ss_pred ccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCc--------CCceEcceEEE--ECCEEEEEEeCCcCccc
Confidence 0000 011123345666688899999999877654321 34589999996 8999999998553321
Q ss_pred ----CcceEEEEEeCCCCCCceecc
Q 012300 252 ----TKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 252 ----~~~~IGVA~SdsP~GPf~~~~ 272 (466)
..-.+..++|+++.|||+...
T Consensus 262 ~~~~~~~~~~g~vsdsl~GP~~~~n 286 (349)
T cd08997 262 PGLSGPDGLYGFVSDSLRGPYKPLN 286 (349)
T ss_pred cccCCCCcEEEEEeCCCCCCCccCC
Confidence 122466679999999999853
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=100.68 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=123.0
Q ss_pred hhheeeeeecCCCCcceeEEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCC
Q 012300 37 LHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPD 116 (466)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~ 116 (466)
.|||.+.+-..... ...+ --|..|+||+|||+.+.||+|- ...+.. ..++-- .+.+++ .+..+|| +
T Consensus 22 yHlFyQ~~P~~~~~--g~~~-WgHa~S~Dlv~W~~~~~aL~P~------~~~d~~-g~~SGs--~~~~~~-~~~~~YT-g 87 (308)
T PF00251_consen 22 YHLFYQYNPFGPEW--GNMH-WGHATSKDLVHWEHLPVALPPD------EEYDAD-GCFSGS--AVVDDD-NLVLFYT-G 87 (308)
T ss_dssp EEEEEEEETTSSSS---SBE-EEEEEESSSSSEEEEEEEE-SS------SGGGTT-EEEEEE--EEEETT-CEEEEEE-E
T ss_pred EEEEeccCCCCccc--ceeE-EEEEECCCCCCceeCCceEccc------ccCCcC-ccCcce--EEEECC-EEEEEEe-c
Confidence 35555544433322 1222 2479999999999999999875 222322 233332 222223 4545555 1
Q ss_pred CCccCCCCCccCCCceeeecCceeeCCC-CCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccce
Q 012300 117 MKTAIDPMKDNGNDSFYYYPGRIWLDTE-GAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAAR 185 (466)
Q Consensus 117 ~~t~~dp~~~~~~~~~~i~pg~~w~dt~-GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~ 185 (466)
. ..+. ..+-.-+.....+..|.... +|||+. +||.|++.++ ++|||+-.....
T Consensus 88 ~--~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~-~~~~m~~g~~~~------------ 151 (308)
T PF00251_consen 88 N--NRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWRED-GRWYMLLGAGRD------------ 151 (308)
T ss_dssp E--ETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECT-TEEEEEEEEEET------------
T ss_pred c--CCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecC-CEEEEEEecccc------------
Confidence 1 1111 11111122223566677655 577764 5889977764 899998653221
Q ss_pred eccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCC------EEEEEEEEeCCCCCcceEEEE
Q 012300 186 VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG------KYVMWMHIDDCNYTKAAVGVA 259 (466)
Q Consensus 186 ~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~G------kYyly~s~~~~~~~~~~IGVA 259 (466)
....+.+|+|+||.+|+..+........ .+...+.|+++.-...+ +++|.++...........+++
T Consensus 152 -~~g~i~~y~S~Dl~~W~~~~~l~~~~~~-------~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~ 223 (308)
T PF00251_consen 152 -GRGCILLYTSDDLIHWEYLGPLFIPGDN-------GGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYM 223 (308)
T ss_dssp -TEEEEEEEEESSSSSEEEEEEESEEETT-------TSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEE
T ss_pred -CcceEEEEEcCCcccCceeCcccccccc-------cccccccceEEEECCcccccceEEEEEEecccccccccccceEE
Confidence 1235889999999999999987664331 25677899999732221 257777764332123445555
Q ss_pred EeCC--CCCCceec-cc--cCCCCCCccCceEEEcCCC-cEEEE
Q 012300 260 ISDY--PTGPFDYL-YS--KRPHGFDSRDMTIFKDDDG-VAYLV 297 (466)
Q Consensus 260 ~Sds--P~GPf~~~-~~--~~p~g~~~iDp~vF~DdDG-~~YL~ 297 (466)
+.+- ..+.|+.. .. ....|....=+..|.|++| +.+|+
T Consensus 224 vG~~d~~~~~f~~~~~~~~~lD~G~dfYA~qtf~~~~~~r~i~~ 267 (308)
T PF00251_consen 224 VGDFDFDGGTFTPDDSSFQRLDYGFDFYAPQTFYDPDGGRRILI 267 (308)
T ss_dssp EEEEETTTTEEEESSTTSEESBSSSS-EEEEEEEETTTTEEEEE
T ss_pred eEEecCCCCeeeeeccccceeccCccccCCchhcCCCcCcEEEE
Confidence 5543 56778754 11 1123444455667888766 55443
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=100.76 Aligned_cols=176 Identities=19% Similarity=0.267 Sum_probs=120.0
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|++|-.+..-. .. .+...+..+.|+||++|+..+.||.+++. .+.+.++..++
T Consensus 44 PNG~iy~--~G~yHlFYQ~~P~~---~~------~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~------~d~~g~ySGSA 106 (486)
T COG1621 44 PNGLIYF--DGKYHLFYQYNPFG---AA------HGPKHWGHAVSKDLVHWEHLPIALAPDDD------YDSHGCYSGSA 106 (486)
T ss_pred CCceeEE--CCEEEEEEecCCCC---CC------CCCceeeeeccCCcccceECCceecCCCc------cccCCceeeeE
Confidence 3455665 48999998875411 11 23456789999999999999999887653 24577899999
Q ss_pred EEEccCCEEEEEEEEe--CCCC-CcceEEEEEeCCCCCCceec-cc---cCCCC--CCccCceEEEcCCCcEEEEEEecC
Q 012300 232 IYNDRTGKYVMWMHID--DCNY-TKAAVGVAISDYPTGPFDYL-YS---KRPHG--FDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~GkYyly~s~~--~~~~-~~~~IGVA~SdsP~GPf~~~-~~---~~p~g--~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+- .+|+=.++|+.. +.+. ......+|.|++ .|.|+.. +. ..|.+ ...+||-||.+++|+.||+-++..
T Consensus 107 V~--~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~ 183 (486)
T COG1621 107 VV--DDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQG 183 (486)
T ss_pred EE--eCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEec
Confidence 96 556655556543 2222 234678999998 7778873 22 13444 478999999999999999999854
Q ss_pred C---CcEEEEEcCCCCCCcc--ccEEEe--ecCceeeeeEEEEECCEEEEEEe
Q 012300 303 N---SELHIGPLTSDYLDVS--NVVRRI--LVGQHREAPALFKHLGTYYMVTS 348 (466)
Q Consensus 303 n---~~i~i~~Ls~D~~~~~--g~~~~i--~~g~~~EgP~ifK~~G~YYL~yS 348 (466)
. |.+.+.+ ++|+.++. |+...- ..+...|+|-+|.-++.=.++++
T Consensus 184 ~~~~g~i~lY~-S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~~~~~~~ 235 (486)
T COG1621 184 EDLKGTILLYE-SDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGEDVLLFW 235 (486)
T ss_pred CCCCceEEEEe-CCCccCcEEEEeeccCCCceeeEEECCCeEEecCcCceEEc
Confidence 3 2455555 66777664 332111 12346999999999887666654
|
|
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=100.13 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=113.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee-ec
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-YP 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i-~p 136 (466)
--|..|+||+|||+.+.+|+|- ..+ . .+..+++-+-.- +-.+.+.|| ++....+ ........+.. ..
T Consensus 57 Wgha~S~Dlv~W~~~~~al~P~-----~~~-d-~~G~~sGsav~~---~g~~~l~YT-g~~~~~~-~~~~~~q~lA~S~D 124 (445)
T TIGR01322 57 WGHYTSKDLVHWEDEGVALAPD-----DPY-D-SHGCYSGSAVDN---NGQLTLMYT-GNVRDSD-WNRESYQCLATMDD 124 (445)
T ss_pred EEEEECCCccccEECCccCcCC-----Ccc-c-CCceEECeEEee---CCEEEEEEe-ccccCCC-CCeeEEEEEEEcCC
Confidence 3588999999999999999764 122 2 224566644322 445545555 2211000 00000000111 14
Q ss_pred CceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 137 GRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 137 g~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
+..|... ++||+. .||.|.+. +|+|||+-...... ....+.+|+|+||++|+..+
T Consensus 125 g~~~~k~-~~pvi~~~~~~~~~~fRDP~V~~~--~g~~~M~~g~~~~~------------~~g~i~ly~S~Dl~~W~~~g 189 (445)
T TIGR01322 125 DGHFEKF-GIVVIELPPAGYTAHFRDPKVWKH--NGHWYMVIGAQTET------------EKGSILLYRSKDLKNWTFVG 189 (445)
T ss_pred CCeEEEC-CCceEeCCCCCCcCcCCCCcEEeE--CCEEEEEEEEecCC------------CceEEEEEECCCcccCeEec
Confidence 4556442 446653 48888765 48999864322100 01246799999999999999
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-----C-CcceEEEEEe--CCCCCCceecccc--CC
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-----Y-TKAAVGVAIS--DYPTGPFDYLYSK--RP 276 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~-----~-~~~~IGVA~S--dsP~GPf~~~~~~--~p 276 (466)
..+........ ..+.+.+.|+++. .+|+++|+|+..... + +....++.+. |-..+.|+..... ..
T Consensus 190 ~~~~~~~~~~~---~~g~~~ECPdlf~--l~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~lD 264 (445)
T TIGR01322 190 EILGDGQNGLD---DRGYMWECPDLFS--LDGQDVLLFSPQGLDASGYDYQNIYQNGYIVGQLDYEAPEFTHGTEFHELD 264 (445)
T ss_pred ccccccccccC---CccceEECCeEEE--ECCcEEEEEeccccCcccccccccccceeEEEEEECCCCEEecCCCCceec
Confidence 76543211100 0133566999996 789999999865321 1 1112344554 3223456532111 12
Q ss_pred CCCCccCceEEEcCCCcEEEE
Q 012300 277 HGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 277 ~g~~~iDp~vF~DdDG~~YL~ 297 (466)
.|....=|..|.|+||+.+|+
T Consensus 265 ~G~dfYA~qtf~~~~gr~i~~ 285 (445)
T TIGR01322 265 YGFDFYAPQTFLAPDGRRILV 285 (445)
T ss_pred cCcCceeeeeEECCCCCEEEE
Confidence 344455567788878886554
|
|
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-07 Score=85.30 Aligned_cols=195 Identities=18% Similarity=0.235 Sum_probs=123.4
Q ss_pred eCCceEEECCCCEEEEEEEeCC-CCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKD-GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~-~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
-|+.|++- +|+|.+|+|..+ +..| +--.|.+ ..+|.+.+.+-... -....=||
T Consensus 26 KD~T~V~y--nGk~~VyAtt~d~~~~y-------------~sm~f~~--Ftdws~~~sA~q~~---------m~~~~vAP 79 (271)
T PF03664_consen 26 KDFTIVPY--NGKHHVYATTADTGGGY-------------GSMNFGP--FTDWSQMASASQNY---------MDQSAVAP 79 (271)
T ss_pred cCceEEeE--CCEEEEEEEeccCCCcc-------------ceEeeec--cCCHHHhhcccccc---------CCcccccc
Confidence 46777765 599999999753 2221 1112443 56788776552211 12235799
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC--ceecccc-----CCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP--FDYLYSK-----RPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GP--f~~~~~~-----~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
.|+|-+-.+.|||.|... .....+.++++|+.| |+....+ ...+.+.||+.|+-| |-..||++.+.
T Consensus 80 ~vFYFaPk~~W~L~yQwg-----~~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D-~~n~yLFfa~D- 152 (271)
T PF03664_consen 80 QVFYFAPKNIWYLAYQWG-----PAAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICD-DTNMYLFFAGD- 152 (271)
T ss_pred eEEEecCCcEEEEEEecC-----CCcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEec-CCceEEEEcCC-
Confidence 999977788999998743 234567889998876 6543222 112345799999975 55799999865
Q ss_pred CCcEEEEEcCC-CCCCccc-cEEEee---cCceeeeeEEEEEC--CEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCC-
Q 012300 303 NSELHIGPLTS-DYLDVSN-VVRRIL---VGQHREAPALFKHL--GTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMG- 374 (466)
Q Consensus 303 n~~i~i~~Ls~-D~~~~~g-~~~~i~---~g~~~EgP~ifK~~--G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~g- 374 (466)
||.|+-.++.- +.-.--| ....++ ....+||+.|+|.+ ++|.|+..+-. -...|-.-++|.++.|||+.+.
T Consensus 153 nGkiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEaiG-s~gRyFRSfTa~sL~G~Wtp~A~ 231 (271)
T PF03664_consen 153 NGKIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEAIG-SDGRYFRSFTATSLDGPWTPQAA 231 (271)
T ss_pred CCcEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEEec-CCCcEEEeeecCCCCCcceeccc
Confidence 67888776643 2211123 233333 24689999999984 57888876422 1123433457999999999873
Q ss_pred ---Ccccc
Q 012300 375 ---NPCIG 379 (466)
Q Consensus 375 ---nPi~~ 379 (466)
||.-+
T Consensus 232 tEsnPFAg 239 (271)
T PF03664_consen 232 TESNPFAG 239 (271)
T ss_pred cccCCccc
Confidence 56554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=99.59 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=117.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCC---cee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGND---SFY 133 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~---~~~ 133 (466)
.-|..|+||+||++.+.||.|- .+.... ..|++-+-.- +..+.++|+ +.. +..+ ...... ..+
T Consensus 40 Wgha~S~Dlv~W~~~~~aL~P~------~~~d~~-g~~sGsav~~---~~~~~~~YT-g~~--~~~~~~~~~~~~~~~~a 106 (437)
T smart00640 40 WGHAVSKDLVHWTHLPVALAPD------EWYDSN-GVFSGSAVID---PGNLSLLYT-GNV--AIDTNVQVQRQAQQLAA 106 (437)
T ss_pred EEEEEcCCcceeeecCcccCCC------CcCCCC-cEEEEEEEEC---CCceEEEEc-CCc--ccccccCcccEEEEEEE
Confidence 5689999999999999999664 123323 3677643322 222545555 211 1211 111111 111
Q ss_pred -eecCceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCC
Q 012300 134 -YYPGRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTW 202 (466)
Q Consensus 134 -i~pg~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W 202 (466)
-..+..|....+|||+. +||.|.+.++ ++|||+-...... ....+.+|+|+||.+|
T Consensus 107 ss~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~-~~~~m~~g~~~~~------------~~G~i~ly~S~Dl~~W 173 (437)
T smart00640 107 SDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDG-DKWYMVIGASDED------------KTGIALLYRSTDLKNW 173 (437)
T ss_pred ECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECC-CEEEEEEEEEecC------------CCeEEEEEECCCcccC
Confidence 13577787766788874 4688887653 6999976532100 0123889999999999
Q ss_pred EEeceeccCCCcccccccCCCCeeeeceEEEEccCC-----EEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc---
Q 012300 203 KNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG-----KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--- 274 (466)
Q Consensus 203 ~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~G-----kYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--- 274 (466)
+..+.++..... ..+.+.+.|+++. .++ ++||.++..........+|....+ ..|+.....
T Consensus 174 ~~~~~~~~~~~~------~~g~~wECPdlf~--l~~~~~~~~~vLi~s~~g~~~~~y~~G~~~g~---~~f~~~~~~~~~ 242 (437)
T smart00640 174 TLLGELLHSGVG------DTGGMWECPDLFP--LPGDGDTSKHVLKVSPQGGSGNYYFVGYFDGS---DQFTPDDPEDVG 242 (437)
T ss_pred eECCcccccCCC------CccceEECCcEEE--eCCCCCceeEEEEECcCCCCccEEEEEEEcCc---eeEeECCccccC
Confidence 999977543211 0135678999996 667 999999876422223445544321 245542211
Q ss_pred ----CCCCCCccCceEEEcCCC-cEEEE
Q 012300 275 ----RPHGFDSRDMTIFKDDDG-VAYLV 297 (466)
Q Consensus 275 ----~p~g~~~iDp~vF~DdDG-~~YL~ 297 (466)
...|....=|..|.|++| +.+|+
T Consensus 243 ~~~~lD~G~dfYA~qt~~~~~~~r~i~~ 270 (437)
T smart00640 243 IGLRLDYGFDFYASQTFYDPDGNRRILI 270 (437)
T ss_pred ccceEecCCCceeeeeeecCCCCcEEEE
Confidence 112344455668888655 55443
|
|
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=84.77 Aligned_cols=138 Identities=19% Similarity=0.289 Sum_probs=85.4
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCC--C----CCCccCceEEEcCCCcEEEEEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRP--H----GFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p--~----g~~~iDp~vF~DdDG~~YL~~g 299 (466)
.|.|++ .+|+|||+|.+...+ ....||+|+|++- -.|+.... ..| . .....||.|++. ||++||+|.
T Consensus 2 nP~v~~--~~G~y~l~y~~~~~~-~~~~ig~A~S~Dg-~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~-~g~y~m~Yt 76 (268)
T cd08993 2 NPAVVY--DNGEFYLLYRAAGND-GVIRLGLARSRDG-LHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKI-DDTYYITYA 76 (268)
T ss_pred cCeEEE--ECCEEEEEEEEECCC-CceEEEEEEECCC-ceEEECCcceEcCCCCCcccccCccCcEEEEE-CCEEEEEEE
Confidence 377886 799999999986543 3578999999883 35775431 112 1 134679999985 779999998
Q ss_pred ecC----CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEE--EECCEEEEEEeCCCCC-CCCcEEE-EEeCCCCCCce
Q 012300 300 SED----NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALF--KHLGTYYMVTSGCTGW-APNEALV-HAAESIMGPWE 371 (466)
Q Consensus 300 ~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~if--K~~G~YYL~yS~~tg~-~~n~~v~-~~Sds~~GPw~ 371 (466)
+.. ...+.+++ ++|+.+++-... +.... ...+.+| |.+|+|||+|....+. ...+.++ +.|+++. -|+
T Consensus 77 a~~~~~~~~~i~lA~-S~D~~~W~~~~~-~~~~~-~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~Dl~-~W~ 152 (268)
T cd08993 77 ARPNAPNGTRIGLAT-TKDFITFERLGT-SLVPN-NRDGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPDLV-HWG 152 (268)
T ss_pred ccCCCCCCcEEEEEE-eCCcceEEEecc-cCCCC-CCCEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCCcC-ccC
Confidence 743 23455665 567766643211 11111 1235666 4699999999643211 1224444 4688776 577
Q ss_pred eCC
Q 012300 372 DMG 374 (466)
Q Consensus 372 ~~g 374 (466)
..+
T Consensus 153 ~~~ 155 (268)
T cd08993 153 NHR 155 (268)
T ss_pred CCe
Confidence 554
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.9e-07 Score=93.96 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=118.6
Q ss_pred CccccchhhhhhccccCCCCCCCCCCccccc----CCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc-CCCceee
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKR----RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN-GNDSFYY 134 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~-~~~~~~i 134 (466)
...|+||++|+...-.| .+.+..-.++ .|..|||.|..- +-.+-++|+. ++-...- .+...|+
T Consensus 57 i~hS~DL~nW~~v~tpl----~~~~~ld~kgn~~~S~giWAPdl~y~---dGkfwl~ytd-----vk~~~g~~k~~~nyl 124 (549)
T COG3507 57 IHHSRDLVNWTLVSTPL----IRTSQLDLKGNFPYSGGIWAPDLSYH---DGKFWLYYTD-----VKRSGGPYKNAGNYL 124 (549)
T ss_pred eeccccccCcEEecccc----cCcchhhhhcccCCCCceeccceecC---CCcEEEEEec-----ccccCCcccccccEE
Confidence 35689999999887533 2333433332 467999998854 7788666641 2222211 1212344
Q ss_pred e----cCceeeCCCCCeE-EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCC--CCCEEece
Q 012300 135 Y----PGRIWLDTEGAPI-QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDM--WTWKNEGI 207 (466)
Q Consensus 135 ~----pg~~w~dt~GnpI-~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DL--v~W~~~g~ 207 (466)
+ +...|.|..--+. .++||++.+|+++.+|.+++.+..+.. ++ .++...+.+++.+-. ..+. .+.
T Consensus 125 ~t~~s~~G~WsDpi~l~~~~~iDPslf~D~dGr~wlv~~~w~~~~~--~~-----~~~~i~l~~~~~~~~~l~g~~-~~~ 196 (549)
T COG3507 125 VTAESIDGPWSDPIKLNGSNAIDPSLFFDKDGRKWLVNGSWDGGIF--MH-----SFAGIILQEYDKTTQKLVGQG-YKI 196 (549)
T ss_pred EEecCCCCCcccceecCCcCccCCceeecCCCCEEEEecccCCCcc--cc-----cccceeeeeccccccccCCcc-cee
Confidence 3 3456766431112 378999999998888888888764321 01 011222333333221 1111 111
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCC--
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHG-- 278 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g-- 278 (466)
++... +....++|.+. +++|-||||.+-.........|.||.|++++|||++..... |..
T Consensus 197 ~~~G~---------~~~~~EGPhl~--k~~gYYYL~~a~gG~t~~gh~~~vaRSKsidGPYe~~~~~pllt~~~~p~~~~ 265 (549)
T COG3507 197 IFDGG---------NGGLTEGPHLY--KKTGYYYLYVAEGGLTTYGHAIRVARSKSIDGPYEDHPGNPLLTSRDNPENPL 265 (549)
T ss_pred EeccC---------CCccccCceee--ccCCEEEEEEEcCCCCccceeEEEEeccCCCCCcccCCCCeeeeecCCCCChh
Confidence 22211 23468999555 58888898877543133457899999999999999764321 111
Q ss_pred CCccCceEEEcCCCcEEEEEE
Q 012300 279 FDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 279 ~~~iDp~vF~DdDG~~YL~~g 299 (466)
..+-...+++..+|++|+.+.
T Consensus 266 q~~gh~~~v~t~~g~w~~~~~ 286 (549)
T COG3507 266 QKAGHGTLVVTPTGEWYFAYL 286 (549)
T ss_pred hhcCCcceEECCCCcEeeeee
Confidence 112234455567788888887
|
|
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=81.41 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=105.8
Q ss_pred cEEEEEeCCCCCCEEece-eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCc
Q 012300 190 GVGCYSSKDMWTWKNEGI-VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPF 268 (466)
Q Consensus 190 gi~v~sS~DLv~W~~~g~-vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf 268 (466)
.|.+..|+|.++|+.... +|.+... + ...+++-|-|++ .+|+|||+|++.+.. ..++++|+|++-. -|
T Consensus 61 ~iglA~S~DGi~f~~~~~pil~P~~~-~-----e~~GvEDPRVt~--i~d~yymtYta~~~~--~~~~~la~s~D~~-~~ 129 (312)
T PF04041_consen 61 RIGLARSDDGIHFERDPEPILYPDTD-Y-----EEWGVEDPRVTK--IDDTYYMTYTAYSGK--GPRIGLATSKDFK-HW 129 (312)
T ss_dssp EEEEEEESSSSS-EE-SS-SBEE-SS-T-----THTEEEEEEEEE--ETTEEEEEEEEEESS--SEEEEEEEESSSS-SE
T ss_pred EEEEEEccCCcCceECCCCEEccCCC-C-----cccCccceeEEE--ECCEEEEEEEEecCC--CcccceEEccchH-hh
Confidence 588999999999998754 4433322 1 235689999997 789999999987543 5789999999853 47
Q ss_pred eeccccCCC-C-------CCccCceEEEcC-CCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeec-------Cceee
Q 012300 269 DYLYSKRPH-G-------FDSRDMTIFKDD-DGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV-------GQHRE 332 (466)
Q Consensus 269 ~~~~~~~p~-g-------~~~iDp~vF~Dd-DG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~E 332 (466)
+..+...+. . ...-|..+|-.. +|+++|++. ...|+++. ++|++.+......+.. ...++
T Consensus 130 ~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---~~~i~la~-S~Dl~~W~~~~~~~~~~~~~~~d~~kiG 205 (312)
T PF04041_consen 130 ERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---DPSIWLAY-SPDLIHWGNHREPLLSPRPGWWDSSKIG 205 (312)
T ss_dssp EEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---SSSBEEEE-ESSSSSEEEEBETSB--STTSSCSSEEE
T ss_pred EEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---CCCEEEEe-cCCcccccccccccccCCCCcChhhccc
Confidence 665432211 1 134788888763 899999887 46788887 5888877543221221 12333
Q ss_pred -eeEEEEECCEEEEEEeC-CCCCCCCcEEEEEeCCCCCCceeC---CCccccC
Q 012300 333 -APALFKHLGTYYMVTSG-CTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 380 (466)
Q Consensus 333 -gP~ifK~~G~YYL~yS~-~tg~~~n~~v~~~Sds~~GPw~~~---gnPi~~~ 380 (466)
||--+|.+.-|.++|-+ .+.....|.+++.-=+...|.+-. ..|++..
T Consensus 206 ~g~pPi~t~~GwL~iyHG~~~~~~~~Y~~g~~LlD~~dP~kvi~r~~~pil~P 258 (312)
T PF04041_consen 206 AGPPPIKTDEGWLLIYHGNVTDEGRVYRLGAALLDLDDPTKVIARSPEPILEP 258 (312)
T ss_dssp E-S-EEEETTEEEEEEEEEESSTTTEEEEEEEEE-SSSTTSEEEEBSS-SB-S
T ss_pred CCCCceEecCCEEEEEeccccCCCCEEEEEEEEEcCCCCcceEECCCCceEcC
Confidence 46666765447777764 223333466655433334444322 4565553
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00069 Score=67.90 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=90.2
Q ss_pred hhhhhhccccCCC-CCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCC---CccCCCCCccCC--CceeeecCce
Q 012300 66 LVEVEEENIQIPP-PRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDM---KTAIDPMKDNGN--DSFYYYPGRI 139 (466)
Q Consensus 66 l~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~---~t~~dp~~~~~~--~~~~i~pg~~ 139 (466)
|++|++.+.|+.- ++ +... ...+|||.|-.|.- +....+.|.-++ -|..||+.- ++ ...-++.|..
T Consensus 55 f~~Ws~~g~A~q~~l~----~~~~--~~~fwAPqVfyf~p-k~kwYL~Yq~~~~~yaTs~dp~~P-~~ws~~qpl~~~~~ 126 (303)
T cd08987 55 FTDWSQAASATQYYLQ----NGNM--TGYRVAPQVFYFAP-QNKWYLIYQWWPAAYSTNSDISNP-NGWSAPQPLFSGTP 126 (303)
T ss_pred ccCHhHhccchhhccc----CCCC--CcccccCEEeeecc-CCEEEEEEecCceEEEeCCCCCCC-CccCCCcccccCcc
Confidence 9999999977741 11 1112 23599999998843 334546666211 012233321 11 1111211111
Q ss_pred eeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEe-CCCCCCEEe---c-eeccCCCc
Q 012300 140 WLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS-KDMWTWKNE---G-IVLAAEET 214 (466)
Q Consensus 140 w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS-~DLv~W~~~---g-~vL~~~~~ 214 (466)
.+....+| |..||- ++++.|||-..+++ .||.| ..+.|.... . .++.. +.
T Consensus 127 -~~~~~~~I---D~~vI~--Dd~~~YLff~~dnG------------------~iyra~~~~~nFp~~~~~~~~~~~~-~~ 181 (303)
T cd08987 127 -NGSPGGWI---DFWVIC--DDTNCYLFFSDDNG------------------KLYRSSTTLGNFPNGGTETVIIMSD-SN 181 (303)
T ss_pred -cCCCCCcc---ceeEEe--CCCCEEEEEecCCC------------------eEEEEecchhhCCCCCCccEEEecC-CC
Confidence 01111223 556653 46999999875442 24443 344333221 1 22221 11
Q ss_pred ccccccCCCCeeeeceEEEEccCC--EEEEEEEEeCCCCCcceEEEEEeCCCCCCceec
Q 012300 215 NETHDLYKLNVLERPKVIYNDRTG--KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 215 ~~~~~~~~~~~iWAP~viyn~~~G--kYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~ 271 (466)
..+.++||.|.. .+| +|+|.+.+...+..+...+ ++|+++.|||+..
T Consensus 182 -------~~~lfEa~~Vyk--v~G~~~YlmiveA~g~~~~rYfrs-~Ts~Sl~GpWt~~ 230 (303)
T cd08987 182 -------KNNLFEASNVYK--VKGQNQYLLIVEAIGSDGGRYFRS-WTATSLDGPWTPL 230 (303)
T ss_pred -------ccccceeeEEEE--ECCCeEEEEEEEecCCCCCCeEEE-EEcCCCCCCceec
Confidence 247799999996 666 9999999886643455566 9999999999976
|
The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr |
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00065 Score=72.80 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee---c
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY---P 136 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~---p 136 (466)
|..|.||+|||.+++||=|- .+.++.| .+.= .... .+.....+|+ |+.. ...........|. .
T Consensus 74 Ha~S~Dlv~W~~~piaL~Pd------~~~d~~g-~ySG--SAV~-~~~~l~lfyt---g~v~-~~~~~r~~~Q~iA~s~d 139 (486)
T COG1621 74 HAVSKDLVHWEHLPIALAPD------DDYDSHG-CYSG--SAVV-DDGNLSLFYT---GNVR-DSNGIRQQTQCIAYSED 139 (486)
T ss_pred eeccCCcccceECCceecCC------CccccCC-ceee--eEEE-eCCcEEEEEc---ccee-ccCCcceeEEEEEEEcC
Confidence 78999999999999999664 4444221 1111 1111 1334445666 2222 2221122112221 2
Q ss_pred CceeeCCCCCeEEe---------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 137 GRIWLDTEGAPIQA---------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 137 g~~w~dt~GnpI~a---------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
|..+.--.||||.. +||.+++++ +|++||+---... . ....|.+|+|.||.+|+..|.
T Consensus 140 g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~-~~~~~~mlgAq~~-~-----------~~g~i~lY~S~DL~~W~~~g~ 206 (486)
T COG1621 140 GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDE-GGKWWMMLGAQGE-D-----------LKGTILLYESDDLKNWQFTGE 206 (486)
T ss_pred CCceEeccCCceecCCCcccccCCCCcccccC-CCcEEEEEEEecC-C-----------CCceEEEEeCCCccCcEEEEe
Confidence 22222213566653 488877765 4666665322110 0 112488999999999999998
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEE-----EEeCCCC-CcceEEEEEeC-CCCCCceeccc-c--CCC
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWM-----HIDDCNY-TKAAVGVAISD-YPTGPFDYLYS-K--RPH 277 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~-----s~~~~~~-~~~~IGVA~Sd-sP~GPf~~~~~-~--~p~ 277 (466)
....... .+.+.+.|+++. -.++=++++ ......+ +....++.+.+ ++ ..|+.... . ...
T Consensus 207 ~~~~~~~-------~gym~ECPdlf~--l~~~~~~~~~pqg~~~~~~~~~n~~~~~Y~vG~~dg-~~f~~~~~~~~~LD~ 276 (486)
T COG1621 207 FGLEQGG-------LGYMWECPDLFE--LDGEDVLLFWPQGLSINGGEYDNIYQSGYFVGDFDG-KEFKLDDGQFRELDF 276 (486)
T ss_pred eccCCCc-------eeeEEECCCeEE--ecCcCceEEcceeeecCCCcCCCcceeEEEEEeecc-ceeEecCCCceeccc
Confidence 7654211 234688999996 555433333 2222222 23446666665 32 22333221 1 234
Q ss_pred CCCccCceEEEcCCCcEEEE-EEe
Q 012300 278 GFDSRDMTIFKDDDGVAYLV-YSS 300 (466)
Q Consensus 278 g~~~iDp~vF~DdDG~~YL~-~g~ 300 (466)
|+...=|..|.|+||+.+++ |.+
T Consensus 277 G~DfYApQtf~~~dgrri~igWmg 300 (486)
T COG1621 277 GFDFYAPQTFLDPDGRRILIGWMG 300 (486)
T ss_pred CccccceeeccCCCCCEEEEEecc
Confidence 67777788898888885444 544
|
|
| >KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=75.12 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=101.0
Q ss_pred CCEEEEEEEeCC-CCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCE
Q 012300 161 SRTYFWYGEYKD-GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGK 239 (466)
Q Consensus 161 ~g~YYlygT~~~-~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~Gk 239 (466)
+|.|.||-++.. +..| +...+....|+||+||+....|+.+.+. .+-+.+|..++.-+ .+|+
T Consensus 69 kG~yHLFyQyNP~gavw----------g~ivWGHavSkDLinW~~lp~Ai~Ps~~------~ding~wSGSati~-~~~~ 131 (571)
T KOG0228|consen 69 KGKYHLFYQYNPKGAVW----------GNIVWGHAVSKDLINWEALPPAIAPSEW------FDINGCWSGSATID-PNNS 131 (571)
T ss_pred CcEEEEEEecCCCCcee----------eeeEeeeecchhhccccccCcccCCCCc------cccCccccceEEEc-cCCC
Confidence 489999988754 2221 2245677889999999999998876542 24567899999985 5677
Q ss_pred EEEEEEEeCCCCCcceEEEEEeCCCCC------------Cceecccc-CCCCCCccCceEEEc-CCCcEEEEEEecC-CC
Q 012300 240 YVMWMHIDDCNYTKAAVGVAISDYPTG------------PFDYLYSK-RPHGFDSRDMTIFKD-DDGVAYLVYSSED-NS 304 (466)
Q Consensus 240 Yyly~s~~~~~~~~~~IGVA~SdsP~G------------Pf~~~~~~-~p~g~~~iDp~vF~D-dDG~~YL~~g~~~-n~ 304 (466)
=+++|+..+.+. .+-.-+|.-.++.. ||...... .......+||+++.. +||++-|+-++-. ..
T Consensus 132 ~vilytg~d~~~-rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~q~ 210 (571)
T KOG0228|consen 132 PVILYTGIDPNN-RQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIKQR 210 (571)
T ss_pred eEEEecccCcCc-eEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecCcc
Confidence 777777554331 22222333333333 33321110 112346899999987 6899999888742 22
Q ss_pred cEEEEEcCCCCCCccccEEEee---cCceeeeeEEEEE
Q 012300 305 ELHIGPLTSDYLDVSNVVRRIL---VGQHREAPALFKH 339 (466)
Q Consensus 305 ~i~i~~Ls~D~~~~~g~~~~i~---~g~~~EgP~ifK~ 339 (466)
.+.+.--+.|+..++.....+. .+.+.|+|-+|.-
T Consensus 211 g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPdffpV 248 (571)
T KOG0228|consen 211 GKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPDFFPV 248 (571)
T ss_pred ceEEEEeccchhhhhcccccccccCccceEECCCcEEe
Confidence 3333344788888875544332 3468899998863
|
|
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0088 Score=61.05 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=99.0
Q ss_pred CCeeeeceEEEEccCCE--EEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCCC----CCCccCceEEEcCCCcE
Q 012300 223 LNVLERPKVIYNDRTGK--YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPH----GFDSRDMTIFKDDDGVA 294 (466)
Q Consensus 223 ~~~iWAP~viyn~~~Gk--Yyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~----g~~~iDp~vF~DdDG~~ 294 (466)
...+..|.++. .+|+ |+|.|-+........+||+|.|++.. .|+.... ..|. -.+.-||-|++- ||++
T Consensus 29 ~~~vfNpgai~--~~~~~R~~l~yr~~~~~~~~~~iglA~S~DGi-~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~y 104 (312)
T PF04041_consen 29 PNAVFNPGAIV--FDGGLRVYLLYRAYGSDIGSSRIGLARSDDGI-HFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTY 104 (312)
T ss_dssp SSEEEEEEEEE--ETTE--EEEEEEEEESSSSEEEEEEEEESSSS-S-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEE
T ss_pred cceEEcCcEEE--ECCeeEEEEEEEeECCCCceeEEEEEEccCCc-CceECCCCEEccCCCCcccCccceeEEEE-CCEE
Confidence 35678888885 4555 88877665444334589999999864 4665321 1111 134679999986 4689
Q ss_pred EEEEEecCCC--cEEEEEcCCCCCCccccEEEeecC-c----------eeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE
Q 012300 295 YLVYSSEDNS--ELHIGPLTSDYLDVSNVVRRILVG-Q----------HREAPALFKHLGTYYMVTSGCTGWAPNEALVH 361 (466)
Q Consensus 295 YL~~g~~~n~--~i~i~~Ls~D~~~~~g~~~~i~~g-~----------~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~ 361 (466)
||.|.+.+.. .+.++ .+.|+.+++-.- .++.. . ..-+.+.-|.||+|+|++-. + ..-.+
T Consensus 105 ymtYta~~~~~~~~~la-~s~D~~~~~r~g-~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r~-----~-~i~la 176 (312)
T PF04041_consen 105 YMTYTAYSGKGPRIGLA-TSKDFKHWERHG-KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHRD-----P-SIWLA 176 (312)
T ss_dssp EEEEEEEESSSEEEEEE-EESSSSSEEEEE-CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEES-----S-SBEEE
T ss_pred EEEEEEecCCCcccceE-EccchHhhEEec-cccCcccccccccccccCceEEEEEEECCEEEEEECC-----C-CEEEE
Confidence 9999976432 23333 367877764211 11110 0 11122233679999999872 1 12234
Q ss_pred EeCCCCCCceeCCCccccCCcc-ce--eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 362 AAESIMGPWEDMGNPCIGGNKV-FR--LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 362 ~Sds~~GPw~~~gnPi~~~~~~-~~--~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
.|++.. .|+....++....+. +. ..+.++ --+..+ ++|+++||- +. .....+|..--+.+|.
T Consensus 177 ~S~Dl~-~W~~~~~~~~~~~~~~~d~~kiG~g~---pPi~t~--~GwL~iyHG--~~-~~~~~~Y~~g~~LlD~ 241 (312)
T PF04041_consen 177 YSPDLI-HWGNHREPLLSPRPGWWDSSKIGAGP---PPIKTD--EGWLLIYHG--NV-TDEGRVYRLGAALLDL 241 (312)
T ss_dssp EESSSS-SEEEEBETSB--STTSSCSSEEEE-S----EEEET--TEEEEEEEE--EE-SSTTTEEEEEEEEE-S
T ss_pred ecCCcc-cccccccccccCCCCcChhhcccCCC---CceEec--CCEEEEEec--cc-cCCCCEEEEEEEEEcC
Confidence 676665 477665444432211 00 112221 223333 268877773 11 1345567554444544
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=66.16 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=68.0
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccc----------------------eeccCcEEEEEeCCCCCCEEecee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAA----------------------RVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~----------------------~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
+||.++.++.+|+-||+-+...+......-+|.. ..+..||.....+++..|+.....
T Consensus 211 RDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL 290 (428)
T PF02435_consen 211 RDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPL 290 (428)
T ss_dssp EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEE
T ss_pred cCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeCcc
Confidence 6999999977888888777543321111111110 122334444444556679988877
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC------CCcceEEEEEeCCCCCCceecc
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN------YTKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~------~~~~~IGVA~SdsP~GPf~~~~ 272 (466)
|..... ...+++|.|+. ++||||||....... ....-.|..++++..|||+++.
T Consensus 291 ~~a~~v--------~de~ERP~iv~--~~gkyYLFt~s~~~~~a~g~~g~d~~yg~~~~~~L~g~y~PLN 350 (428)
T PF02435_consen 291 LSANGV--------NDELERPHIVF--MNGKYYLFTISHLSTFADGIVGPDGVYGFVVSDSLRGPYKPLN 350 (428)
T ss_dssp EEETTT--------BS-EEEEEEEE--ETTEEEEEEEEEGGGBSTTHHTTSEEEEEEEESSTTS--EEGC
T ss_pred eecccc--------cccccCCcEEE--ECCEEEEEEEeccccccCCccCCCeEEEEEECccccCCceecC
Confidence 765543 46799999996 999999999876321 1223344455555999999874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A .... |
| >KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.044 Score=58.49 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=84.0
Q ss_pred hheeeeeecCCCCcceeEEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCccc----------c-eeeeeccC-
Q 012300 38 HFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTT----------T-LIDEFLDE- 105 (466)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----------~-~v~~f~~~- 105 (466)
|||.-+..+...-++ .+=-|..|.||++||....||=|- +|..-. ..|. | ++.+-.++
T Consensus 73 HLFyQyNP~gavwg~---ivWGHavSkDLinW~~lp~Ai~Ps------~~~din-g~wSGSati~~~~~~vilytg~d~~ 142 (571)
T KOG0228|consen 73 HLFYQYNPKGAVWGN---IVWGHAVSKDLINWEALPPAIAPS------EWFDIN-GCWSGSATIDPNNSPVILYTGIDPN 142 (571)
T ss_pred EEEEecCCCCceeee---eEeeeecchhhccccccCcccCCC------CccccC-ccccceEEEccCCCeEEEecccCcC
Confidence 444444444433322 233489999999999999998664 454422 2221 1 11111122
Q ss_pred CcceEEeeeCCCCccCCCCCccCCCceeeecCceeeCCCCCeEEe------------eCCceEEECCCCEEEEEEEeCCC
Q 012300 106 NSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQA------------HGGGILYDERSRTYFWYGEYKDG 173 (466)
Q Consensus 106 ~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg~~w~dt~GnpI~a------------hd~~Ii~~~~~g~YYlygT~~~~ 173 (466)
+-+| ..|+ .+....||-.. .|....|||+.. +||-.....++|+|=|..-.+..
T Consensus 143 ~rqV-qn~a-~p~d~sdp~l~------------~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~ 208 (571)
T KOG0228|consen 143 NRQV-QNYA-YPKDVSDPQLI------------AWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIK 208 (571)
T ss_pred ceEE-EEEe-ccCCCCchhhh------------eeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecC
Confidence 2222 2333 11123333332 233334555432 57888877777888776544321
Q ss_pred CCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEcc
Q 012300 174 PTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDR 236 (466)
Q Consensus 174 ~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~ 236 (466)
.-..+.+|+|+|+++|+.....+...+ .+.+-+.|+.+.-..
T Consensus 209 -------------q~g~a~~Y~S~Df~~W~k~~~~~h~~~--------~tgmwECPdffpVs~ 250 (571)
T KOG0228|consen 209 -------------QRGKAIIYSSDDFKHWTKSSVPLHSGD--------LTGMWECPDFFPVSI 250 (571)
T ss_pred -------------ccceEEEEeccchhhhhcccccccccC--------ccceEECCCcEEecc
Confidence 112467899999999999887665433 244556777764333
|
|
| >COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.27 Score=49.68 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=104.2
Q ss_pred cCcEEEEEeCCCCC-CEEece--eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC
Q 012300 188 IIGVGCYSSKDMWT-WKNEGI--VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP 264 (466)
Q Consensus 188 ~~gi~v~sS~DLv~-W~~~g~--vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP 264 (466)
...+.+..|+|+.+ |+.+.. ..+... ...--+++-|-|.+ .+|+|+|.|++.+. ...++++|++.+-
T Consensus 60 ~s~l~ia~s~dgi~~~~~e~ep~~~P~~~------~~e~~G~EDPRvt~--I~~~y~mtYTa~s~--~g~~~~la~t~~f 129 (314)
T COG2152 60 ISHLRIARSDDGIGEFEIEPEPTLWPANY------PYEIYGIEDPRVTK--IGGRYYMTYTAYSD--KGPRLALAVTKDF 129 (314)
T ss_pred ceEEEEEecccCCCceecCCcceEecCCC------chhhhcccCceEEE--ECCEEEEEEEecCC--CCcccchhhhhhh
Confidence 34688899999999 997653 333121 11234578899997 89999999998643 2577889998886
Q ss_pred CCCceeccccCCCCCCccCceEEEc-CCCcEEEEEEec----C-CCcEEEEEcCCCCCCccccEEEeec---C-----ce
Q 012300 265 TGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE----D-NSELHIGPLTSDYLDVSNVVRRILV---G-----QH 330 (466)
Q Consensus 265 ~GPf~~~~~~~p~g~~~iDp~vF~D-dDG~~YL~~g~~----~-n~~i~i~~Ls~D~~~~~g~~~~i~~---g-----~~ 330 (466)
.. |+..+...+. ...|..+|-- -+|+++|+-.-- . .++++++- ++|+..+......+.. + ..
T Consensus 130 ~n-~~rig~i~~p--dn~~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~-S~dl~~w~~~~~~l~~~~~~~~d~~KI 205 (314)
T COG2152 130 LN-WERIGAIFPP--DNKDAALFPKKINGKYALLHRPVLGEYGMKGNIWIAF-SPDLEHWGIHRKLLGPRMGGWWDELKI 205 (314)
T ss_pred hh-hhhcccccCC--CCCCceEeeEEecCcEEEEEeecccccCccCceEEEE-cCCccCCCccceeeccccCCcchhhhc
Confidence 54 8877654443 4677777754 377877765421 1 34677664 7888776544333321 1 11
Q ss_pred eeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC---CCccccC
Q 012300 331 REAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 380 (466)
Q Consensus 331 ~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~---gnPi~~~ 380 (466)
-=||.-+|-..-+-++|-+-+....-|.++++==++.+|..-. .++|++.
T Consensus 206 G~g~~Pikt~egwLvlyHgv~~~~~~Yr~GaALlDledp~kvl~rS~~~IleP 258 (314)
T COG2152 206 GWGTPPIKTEEGWLVLYHGVDETLTVYRLGAALLDLEDPTKVLARSPEYILEP 258 (314)
T ss_pred cCCCCCcCcccceEEEEeeccCccceEEeeeEEEcCCCCcEEEecCCccccCc
Confidence 2234445543335555643221111244544433555565432 3455543
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=2 Score=41.96 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=107.2
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
.+|.++++. +|+.+++.+..... ..|.+ ..+..+.|+| ..+|+....+....... ....+-.+
T Consensus 49 ~~p~~~~~~-~g~l~l~~~~~~~~---~~~~~------~~~~~~~S~D~G~TWs~~~~l~~~~~~~------~~~~~~~~ 112 (275)
T PF13088_consen 49 GNPSLVVDP-DGRLWLFYSAGSSG---GGWSG------SRIYYSRSTDGGKTWSEPTDLPPGWFGN------FSGPGRGP 112 (275)
T ss_dssp EEEEEEEET-TSEEEEEEEEEETT---ESCCT------CEEEEEEESSTTSS-EEEEEEHHHCCCS------CEECSEEE
T ss_pred cCcEEEEeC-CCCEEEEEEEccCC---CCCCc------eeEEEEEECCCCCCCCCccccccccccc------eeccceee
Confidence 356677765 78888887432110 01111 1222245555 88999987543321110 01111222
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEE
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 309 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~ 309 (466)
-+.. .+|+.++-+.... .....+.+..|++---.|+..... +......-|+++.+.||+.++++....+..+.++
T Consensus 113 ~i~~--~~G~l~~~~~~~~--~~~~~~~~~~S~D~G~tW~~~~~~-~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~ 187 (275)
T PF13088_consen 113 PIQL--PDGRLIAPYYHES--GGSFSAFVYYSDDGGKTWSSGSPI-PDGQGECEPSIVELPDGRLLAVFRTEGNDDIYIS 187 (275)
T ss_dssp EEEE--CTTEEEEEEEEES--SCEEEEEEEEESSTTSSEEEEEEC-ECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEE
T ss_pred eeEe--cCCCEEEEEeecc--ccCcceEEEEeCCCCceeeccccc-cccCCcceeEEEECCCCcEEEEEEccCCCcEEEE
Confidence 2443 5888776533221 134677888888854457764321 1223567888888899999999886422456666
Q ss_pred EcCCCCCCccccEEEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC
Q 012300 310 PLTSDYLDVSNVVRRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 373 (466)
Q Consensus 310 ~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK-~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~ 373 (466)
.-.+...++.. +..+.......++.+++ .+|..+|++....+ ......+.|.+=---|+..
T Consensus 188 ~S~D~G~TWs~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~~l~l~~S~D~g~tW~~~ 249 (275)
T PF13088_consen 188 RSTDGGRTWSP-PQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG--RSNLSLYVSEDGGKTWSRP 249 (275)
T ss_dssp EESSTTSS-EE-EEEEECSSCCEEEEEEECTTSEEEEEEECSST--SEEEEEEEECTTCEEEEEE
T ss_pred EECCCCCcCCC-ceecccCcccCCceEEEcCCCCEEEEEECCCC--CCceEEEEEeCCCCcCCcc
Confidence 65566776654 33333334456666676 47899999983222 2222233555443346643
|
... |
| >COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.9 Score=45.99 Aligned_cols=135 Identities=17% Similarity=0.095 Sum_probs=78.9
Q ss_pred CCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCE
Q 012300 160 RSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGK 239 (466)
Q Consensus 160 ~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~Gk 239 (466)
-+|+|+|+.--..+ .. + ....+-+..|.||.+|..+...|.....+|. .....=|+|--+. -.+|
T Consensus 153 ~ngk~~~lhr~~~~-~~-----~----~~~niwia~S~dl~~w~~~~~~l~~~~~~~~---d~~KIG~g~~Pik-t~eg- 217 (314)
T COG2152 153 INGKYALLHRPVLG-EY-----G----MKGNIWIAFSPDLEHWGIHRKLLGPRMGGWW---DELKIGWGTPPIK-TEEG- 217 (314)
T ss_pred ecCcEEEEEeeccc-cc-----C----ccCceEEEEcCCccCCCccceeeccccCCcc---hhhhccCCCCCcC-cccc-
Confidence 36899999653221 00 0 0245778889999999999876665444332 1334457876664 2444
Q ss_pred EEEEEEEeCCCCCcceEEEEEeCCCCCCceecc-cc----CCC------C--CCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 240 YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY-SK----RPH------G--FDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 240 Yyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~-~~----~p~------g--~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
|.+.|++.+.+-+..+.|.|.=| +++|.+..- +. .|. | .+.+=|+=+++.+|+..++||+-+ ..+
T Consensus 218 wLvlyHgv~~~~~~Yr~GaALlD-ledp~kvl~rS~~~IleP~~~yE~~Gdv~~VVF~CG~v~~~~~l~iyYGaAD-t~v 295 (314)
T COG2152 218 WLVLYHGVDETLTVYRLGAALLD-LEDPTKVLARSPEYILEPEELYERYGDVPNVVFPCGAVLLGDELLIYYGAAD-TSV 295 (314)
T ss_pred eEEEEeeccCccceEEeeeEEEc-CCCCcEEEecCCccccCccchhhhcCCcCcEEeecceEEECCEEEEEeeccc-cEE
Confidence 66666655443235788888876 367766431 11 121 1 123334444556789999998754 345
Q ss_pred EEEEc
Q 012300 307 HIGPL 311 (466)
Q Consensus 307 ~i~~L 311 (466)
.+++.
T Consensus 296 ~la~~ 300 (314)
T COG2152 296 GLAEI 300 (314)
T ss_pred EEEEe
Confidence 55554
|
|
| >COG3940 Predicted beta-xylosidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=5.2 Score=38.74 Aligned_cols=179 Identities=13% Similarity=0.184 Sum_probs=94.0
Q ss_pred CCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc----CCCceeeecCceeeCCCCCeEE-----------eeCCceE
Q 012300 92 PKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN----GNDSFYYYPGRIWLDTEGAPIQ-----------AHGGGIL 156 (466)
Q Consensus 92 ~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~----~~~~~~i~pg~~w~dt~GnpI~-----------ahd~~Ii 156 (466)
...|||++... |......|. +.|++.. |+-++.+---..-....|+-+. +=|..+.
T Consensus 68 ~liwapeih~i---ngkwyiyfa------aa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattf 138 (324)
T COG3940 68 NLIWAPEIHFI---NGKWYIYFA------AAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTF 138 (324)
T ss_pred hcccccceeEE---cceEEEEEe------ecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeee
Confidence 37899998877 777644444 4444432 4444333211110011122211 1244444
Q ss_pred EECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec--eeccCCCcccccccCCCCeee---eceE
Q 012300 157 YDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG--IVLAAEETNETHDLYKLNVLE---RPKV 231 (466)
Q Consensus 157 ~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g--~vL~~~~~~~~~~~~~~~~iW---AP~v 231 (466)
.. .+..||+.++-+..- . +...|.+.+..+ .|+-.| +.|...+..|. -.++| .|.|
T Consensus 139 eh-~gk~yyvwaqkdp~i------~-----gnsniyiaemen--pwtikgepvmlskpe~dwe-----~~gfwvnegpav 199 (324)
T COG3940 139 EH-NGKLYYVWAQKDPNI------K-----GNSNIYIAEMEN--PWTIKGEPVMLSKPELDWE-----IKGFWVNEGPAV 199 (324)
T ss_pred ee-CCEEEEEEeccCCCc------c-----CCcceEEEeccC--CceecCceEEecCCCcccE-----EEEEEecCCceE
Confidence 43 457788887643210 1 123466666655 577665 45655555442 23344 6899
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCC---CCCC--ceeccc------cCCCCCCccCceEEEcCCCc-EEEEEE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY---PTGP--FDYLYS------KRPHGFDSRDMTIFKDDDGV-AYLVYS 299 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds---P~GP--f~~~~~------~~p~g~~~iDp~vF~DdDG~-~YL~~g 299 (466)
+. ++||-++-|++...+ ...|+|+..+.. +..| |+.... .....++....++-+.+||+ --|+|.
T Consensus 200 ~k--~ngkifi~ysasatd-~nycmgllwanen~dlldpaswtksptpvf~ts~en~qygpghnsftvtedgkhdvlvyh 276 (324)
T COG3940 200 LK--KNGKIFITYSASATD-VNYCMGLLWANENSDLLDPASWTKSPTPVFKTSMENHQYGPGHNSFTVTEDGKHDVLVYH 276 (324)
T ss_pred EE--ECCEEEEEEeccccc-cceeeeeeeecccCCcCCchhcccCCCcceeeehhccccCCCCCceEecCCCcccEEEEe
Confidence 95 999999999876543 357999988753 3333 443211 01111233444556667885 467776
Q ss_pred ec
Q 012300 300 SE 301 (466)
Q Consensus 300 ~~ 301 (466)
..
T Consensus 277 ar 278 (324)
T COG3940 277 AR 278 (324)
T ss_pred cc
Confidence 54
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=7.1 Score=38.04 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=95.2
Q ss_pred cCcEEEEEe--CCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC--CCCcceEEEEEeC
Q 012300 188 IIGVGCYSS--KDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC--NYTKAAVGVAISD 262 (466)
Q Consensus 188 ~~gi~v~sS--~DL-v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~--~~~~~~IGVA~Sd 262 (466)
...+.++.| +|. .+|+....+..... .....+-|.+++++ +|+.+|+|..... ......+...+|+
T Consensus 15 ~~d~~i~~S~s~D~G~tWs~~~~v~~~~~--------~~~~~~~p~~~~~~-~g~l~l~~~~~~~~~~~~~~~~~~~~S~ 85 (275)
T PF13088_consen 15 AIDIVIRRSRSTDGGKTWSEPRIVADGPK--------PGRRYGNPSLVVDP-DGRLWLFYSAGSSGGGWSGSRIYYSRST 85 (275)
T ss_dssp CEEEEEEEECCCCCTTEEEEEEEEETSTB--------TTCEEEEEEEEEET-TSEEEEEEEEEETTESCCTCEEEEEEES
T ss_pred CCCEEEEEEEeeCCCCeeCCCEEEeeccc--------cCCcccCcEEEEeC-CCCEEEEEEEccCCCCCCceeEEEEEEC
Confidence 346788888 887 56999988776541 24567899999865 9999998854432 1234555568888
Q ss_pred CCCCCceeccccCC--CC--CCccCceEEEcCCCcEEEEEEecC--CCcEEEEEcCCCCCCccccEEEeecC-ceeeeeE
Q 012300 263 YPTGPFDYLYSKRP--HG--FDSRDMTIFKDDDGVAYLVYSSED--NSELHIGPLTSDYLDVSNVVRRILVG-QHREAPA 335 (466)
Q Consensus 263 sP~GPf~~~~~~~p--~g--~~~iDp~vF~DdDG~~YL~~g~~~--n~~i~i~~Ls~D~~~~~g~~~~i~~g-~~~EgP~ 335 (466)
+---.|+......+ .. .......+++-.||+.++.+.... +....+..-++...++... ..+... ...|...
T Consensus 86 D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~~~~~~~~e~~~ 164 (275)
T PF13088_consen 86 DGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSG-SPIPDGQGECEPSI 164 (275)
T ss_dssp STTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEE-EECECSEEEEEEEE
T ss_pred CCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecc-ccccccCCcceeEE
Confidence 74346876532110 11 112233234446898888643321 1233333333344444221 112122 3455555
Q ss_pred EEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCcee
Q 012300 336 LFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 372 (466)
Q Consensus 336 ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~ 372 (466)
+...+|..++++-.. +. .....++|++--.-|+.
T Consensus 165 ~~~~dG~l~~~~R~~-~~--~~~~~~~S~D~G~TWs~ 198 (275)
T PF13088_consen 165 VELPDGRLLAVFRTE-GN--DDIYISRSTDGGRTWSP 198 (275)
T ss_dssp EEETTSEEEEEEEEC-SS--TEEEEEEESSTTSS-EE
T ss_pred EECCCCcEEEEEEcc-CC--CcEEEEEECCCCCcCCC
Confidence 555689999998653 11 13344467766556876
|
... |
| >PF13810 DUF4185: Domain of unknown function (DUF4185) | Back alignment and domain information |
|---|
Probab=89.67 E-value=27 Score=35.89 Aligned_cols=168 Identities=23% Similarity=0.420 Sum_probs=88.0
Q ss_pred cCCE-EEEEEEEeCCC-----CCcceEEEEEeCCCCCCceeccc-cCCC-----CCCc----cCceEEEcCCCcEEEEEE
Q 012300 236 RTGK-YVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLYS-KRPH-----GFDS----RDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 236 ~~Gk-Yyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~~-~~p~-----g~~~----iDp~vF~DdDG~~YL~~g 299 (466)
.+|+ |+.|.+.+.-+ +..-.-++|.|++.-..|+.... ..+. |... .=+.-|..+||-.|++=.
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt 182 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGT 182 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeC
Confidence 5565 55555554321 11225789999997778887642 1221 1111 112224346777777543
Q ss_pred ecC-CCcEEEEEcCCCCC-C------cccc---E-------EEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEE
Q 012300 300 SED-NSELHIGPLTSDYL-D------VSNV---V-------RRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALV 360 (466)
Q Consensus 300 ~~~-n~~i~i~~Ls~D~~-~------~~g~---~-------~~i~~g~~~EgP~ifK-~~G~YYL~yS~~tg~~~n~~v~ 360 (466)
..+ ++.+++++..++-+ . +.+. . ..|+.+..-|-....- +.|+|-|+|-.. .++.+.
T Consensus 183 ~~~R~g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~----~~~~I~ 258 (316)
T PF13810_consen 183 PFGRNGGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDA----GTGGIV 258 (316)
T ss_pred CCCCCCcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecc----cCCcEE
Confidence 222 46788888765311 1 1111 1 3445555667643332 389999999653 123444
Q ss_pred -EEeCCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeC
Q 012300 361 -HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN 414 (466)
Q Consensus 361 -~~Sds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~-~yi~~~d~w~ 414 (466)
.+|++|.|||+.....+.... . ...| +++|.|---..+ .|+++ -+|+
T Consensus 259 ~RtA~~P~GpWs~~~~l~~~~~-~--~~lY---ggyihP~s~~g~~L~~~v-S~W~ 307 (316)
T PF13810_consen 259 LRTAPSPTGPWSEPKPLVTVEE-V--PQLY---GGYIHPWSTSGDDLYFVV-SQWN 307 (316)
T ss_pred EEecCCCCCCCCCCeeEEeCCc-C--Ccce---eeEeCCCccCCCCEEEEE-EEcc
Confidence 479999999986532222111 1 1233 356766542223 45444 5776
|
|
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=89.29 E-value=23 Score=35.04 Aligned_cols=171 Identities=13% Similarity=0.173 Sum_probs=92.9
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--CCCCccCceEEE-cCCCcEEEEEEecC
Q 012300 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRDMTIFK-DDDGVAYLVYSSED 302 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~~iDp~vF~-DdDG~~YL~~g~~~ 302 (466)
+=-|.+++ .||||.+|.+..+...+-..+.+. +.-.|........ ......=|.||. .+...+||+|- |+
T Consensus 25 lKD~T~V~--ynGk~~VyAtt~d~~~~y~sm~f~----~Ftdws~~~sA~q~~m~~~~vAP~vFYFaPk~~W~L~yQ-wg 97 (271)
T PF03664_consen 25 LKDFTIVP--YNGKHHVYATTADTGGGYGSMNFG----PFTDWSQMASASQNYMDQSAVAPQVFYFAPKNIWYLAYQ-WG 97 (271)
T ss_pred ccCceEEe--ECCEEEEEEEeccCCCccceEeee----ccCCHHHhhccccccCCcccccceEEEecCCcEEEEEEe-cC
Confidence 33488886 899999998876432111122221 1112333322111 122356788876 46778999997 33
Q ss_pred CCcEEEEEcCCCCCCccc--cEEEeecC------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC-
Q 012300 303 NSELHIGPLTSDYLDVSN--VVRRILVG------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM- 373 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g--~~~~i~~g------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~- 373 (466)
+ .....+.+.|.....| .++.++.+ ...=..+|+-.+-.-|||+++..| ..|||.-+.|.|-..
T Consensus 98 ~-~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~DnG------kiYRs~~~i~nFP~~f 170 (271)
T PF03664_consen 98 P-AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDNG------KIYRSSMPIGNFPGGF 170 (271)
T ss_pred C-CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCCC------cEEEeccchhhCCCCC
Confidence 2 2234455666655443 23333322 112345677778889999986432 256888888876544
Q ss_pred C-Cc--cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC
Q 012300 374 G-NP--CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA 416 (466)
Q Consensus 374 g-nP--i~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~ 416 (466)
| ++ ++.+.. ..-|.. .-|-+++|. +.||++-....+.
T Consensus 171 gs~~~vvmsd~~---~nLFEA--~~VYkv~G~-~~YLmiVEaiGs~ 210 (271)
T PF03664_consen 171 GSSYTVVMSDTR---NNLFEA--VQVYKVKGQ-NQYLMIVEAIGSD 210 (271)
T ss_pred CCceEEEEecCc---cceeee--eEEEEEcCC-ceEEEEEEEecCC
Confidence 3 22 222211 122222 346677773 5688887777653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 466 | ||||
| 3vsf_A | 526 | Crystal Structure Of 1,3gal43a, An Exo-Beta-1,3-Gal | 5e-53 | ||
| 3nqh_A | 441 | Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) | 9e-28 | ||
| 3kst_A | 306 | Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811 | 2e-09 | ||
| 3qef_A | 307 | The Structure And Function Of An Arabinan-Specific | 2e-07 | ||
| 3qee_A | 307 | The Structure And Function Of An Arabinan-Specific | 2e-07 | ||
| 3qed_A | 314 | The Structure And Function Of An Arabinan-Specific | 8e-07 | ||
| 3qz4_A | 311 | Crystal Structure Of An Endo-1,4-Beta-Xylanase D (B | 1e-06 |
| >pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An Exo-Beta-1,3-Galactanase From Clostridium Thermocellum Length = 526 | Back alignment and structure |
|
| >pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A Resolution Length = 441 | Back alignment and structure |
|
| >pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 306 | Back alignment and structure |
|
| >pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 307 | Back alignment and structure |
|
| >pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 307 | Back alignment and structure |
|
| >pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 314 | Back alignment and structure |
|
| >pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A Resolution Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} Length = 441 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 3e-86
Identities = 97/318 (30%), Positives = 138/318 (43%), Gaps = 29/318 (9%)
Query: 133 YYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVG 192
G W D G + AHG I+ + Y+ +GEYK + G
Sbjct: 7 VVNNGIPWFDDRGEIVNAHGACIVEENG--RYYLFGEYKSDKSNAFP----------GFS 54
Query: 193 CYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT 252
CYSS D+ WK E +VL + + L V ER KV+ TG+YVM+MH DD NY
Sbjct: 55 CYSSDDLVNWKFERVVLPMQSS---GILGPDRVGERVKVMKCPSTGEYVMYMHADDMNYK 111
Query: 253 KAAVGVAISDYPTGPFDYLYSKRPHGFDSR--DMTIFKDDDGVAYLVYSSEDNSELHIGP 310
+G A G + G R DM ++D DG YL+ +
Sbjct: 112 DPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG-----GIVYR 166
Query: 311 LTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPW 370
L+ DY V + G H E+PA+FK GTY+ + S T W N+ A S+ GPW
Sbjct: 167 LSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPSVKGPW 226
Query: 371 EDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN-PADLRESRYIWLPL 428
G G+ T+ +Q+T+V PL + +FM DRW+ P + Y+W+P+
Sbjct: 227 TRQGLFAPEGS-----LTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPM 281
Query: 429 IVRGPADRPLEYNFGFPL 446
V G EY + +
Sbjct: 282 QVDGTKLSIPEYWPSWDV 299
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 306 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC 249
G C+SS D+ WK EG L+A ++ T + P+V Y + K+ ++
Sbjct: 49 GFACFSSDDLKNWKREGQALSATDSYGTWGFWA------PEVYYVESKKKFYLF------ 96
Query: 250 NYT-KAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS-EDNSELH 307
Y+ + + VA S P GPF + S D ++F DDDG YL + D + +
Sbjct: 97 -YSAEEHICVATSTTPEGPFRQEVKQPIWSEKSIDTSLFIDDDGTPYLYFVRFTDGNVIW 155
Query: 308 IGPLTSDYLDVSNVVRRILV----------GQHREAPALFKHLGTYYMVTS-GCTGWAPN 356
+ +T D + + + G+ E P+L K G YY++ S
Sbjct: 156 VAQMTDDLMSIKTETLNQCIKAEVSWELLQGKVAEGPSLLKKNGVYYLIYSANHYE-NKG 214
Query: 357 EALVHA-AESIMGPWEDMGNPCI 378
+ +A +++ MGPW +
Sbjct: 215 YGVGYATSDTPMGPWVKYSKNPL 237
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* Length = 307 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 3e-23
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 35/226 (15%)
Query: 163 TYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEE-TNETHDLY 221
+ Y + YSS DM W+ G L A++ T D +
Sbjct: 23 RVYLY------AGRDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTWAKGDAW 76
Query: 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKA-AVGVAISDYPTGPF----------DY 270
+VI + GK+ ++ + + A+GVA+ D P GPF +
Sbjct: 77 A------SQVIERN--GKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITND 128
Query: 271 LYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQH 330
+ + P +D D ++F DDDG AYL + N+ L + +++ +R I
Sbjct: 129 MTTDTPIDWDDIDPSVFIDDDGQAYLFWG---NTRPRYAKLKKNMVELDGPIRAIEGLPE 185
Query: 331 -REAPALFKHLGTYYMVTSGCTGWAPNEALVHA-AESIMGPWEDMG 374
EA + K+ YY+ + G+ E + +A +SI GPW G
Sbjct: 186 FTEAIWVHKYQDNYYLSYA--MGF--PEKIGYAMGKSIKGPWVYKG 227
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} Length = 311 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 32/210 (15%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER----PKVIYNDRTGKY--VMW 243
+SSK++ TWK E ++L + ++ P + GKY +
Sbjct: 45 YFKVFSSKNLKTWKEETVILEMGK--------NVSWANGNAWAPCIEEKKIDGKYKYFFY 96
Query: 244 MHIDDCNYTKAAVGVAISDYPTGPF----DYLYSKRPHGFDSR-DMTIFKDD-DGVAYLV 297
+ +GVA++D PTGPF + + P G + D+ +F D G +YL
Sbjct: 97 YSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLY 156
Query: 298 YSSEDNSELHIGPLTSDYLDVSNVVRRILVGQ--------HREAPALFKHLGTYYMVTSG 349
+ N + L D L + +L + +REAP + G YY S
Sbjct: 157 WG---NGYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSV 213
Query: 350 CTGWAPNEALVHA-AESIMGPWEDMGNPCI 378
+PN +V+ A+S +GP E P +
Sbjct: 214 DDTGSPNYHVVYGTAQSPLGPIEVAKEPIV 243
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* Length = 487 | Back alignment and structure |
|---|
Score = 87.5 bits (216), Expect = 9e-19
Identities = 42/231 (18%), Positives = 62/231 (26%), Gaps = 38/231 (16%)
Query: 187 DIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER---PKVIYND--RTGKYV 241
++ V SS DM W + G + A P + K+
Sbjct: 58 NLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFF 117
Query: 242 MWMHIDDCNYTKAAVGVAISDYPTGPF---------DYLYSKRPHGFDSRDMTIFKDDDG 292
++ +GV +D P GP+ D +F DDDG
Sbjct: 118 LYFANSGG-----GIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDG 172
Query: 293 VAYLVYSS-------------EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKH 339
YL + + L D V I E L K+
Sbjct: 173 TGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDSGLHKY 232
Query: 340 LGTYYMVTSG-----CTGWAPNEALVHA-AESIMGPWEDMGNPCIGGNKVF 384
GTYY P + + + S MGP+ G+ F
Sbjct: 233 NGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFF 283
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A Length = 470 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 4e-17
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 37/224 (16%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER---------PKVIYNDRTGKY 240
+ S D+ W+ ++ + + +L V GKY
Sbjct: 54 HLASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVTQL-ADGKY 112
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPF----------------DYLYSKRPHGFDSRDM 284
M+ + + ++A+GVA++D GP+ D +
Sbjct: 113 YMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVAP 172
Query: 285 TIFKDDDGVAYLVYSSEDNSELHIGPLTSD---YLDVSNVVRRILVGQHR--EAPALFKH 339
F D DG ++VY S + + I + L +++L G H E P + +
Sbjct: 173 HTFFDKDGKLWMVYGS-YSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYN 231
Query: 340 LGT--YYMVTS-GCTGWAPNEALVHA-AESIMGPWEDM-GNPCI 378
T YY+ S G + A ++ GP+ D GNP +
Sbjct: 232 PDTQYYYLYLSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPML 275
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* Length = 374 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 6e-17
Identities = 51/283 (18%), Positives = 80/283 (28%), Gaps = 51/283 (18%)
Query: 117 MKTAIDPMKDNGND----SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKD 172
AI+ D F P + L E I+ +L + + WY + +
Sbjct: 14 SLRAIERGYDEKGPEWLFEFDITPLKGDLAYEEGVIRRDPSAVLKVDD-EYHVWYTKGEG 72
Query: 173 GPTYHAHKKAAARV---DIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229
+V D V +SKD TWK G + D + P
Sbjct: 73 ETVGFGSDNPEDKVFPWDKTEVWHATSKDKITWKEIGPAIQRGAAGAYDD----RAVFTP 128
Query: 230 KVIYNDRTGKYVMWMHIDDCNYTKAA---VGVAISDYPTGPFDYLYSKRPHGFDSRDMTI 286
+V+ ++ G Y + Y + + +A SD P GP+ S P D
Sbjct: 129 EVLRHN--GTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWT--KSDAPILSPENDGVW 184
Query: 287 FKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMV 346
D+D + +S P L +Y+
Sbjct: 185 DTDEDNRFLVKEKGSFDSHKV------------------------HDPCLMFFNNRFYLY 220
Query: 347 TSGCTGWAPNEAL-------VHAAESIMGPWEDM-GNPCIGGN 381
G T V A+S +GP+ NP
Sbjct: 221 YKGETMGESMNMGGREIKHGVAIADSPLGPYTKSEYNPITNSG 263
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A Length = 404 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 4e-16
Identities = 49/232 (21%), Positives = 69/232 (29%), Gaps = 46/232 (19%)
Query: 164 YFWYG---EYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL 220
Y WY G K D + +SKD TWK +GI + E D
Sbjct: 104 YVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIAVKRGEKGAYDD- 162
Query: 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT---KAAVGVAISDYPTGPFDYLYSKRPH 277
+ P+V+ GKY + YT K +G+A +D P G +
Sbjct: 163 ---RSVFTPEVMEWK--GKYYLCYQAVKSPYTVRVKNTIGMACADSPEGLW--------- 208
Query: 278 GFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALF 337
+ + D G EDN + D V P +
Sbjct: 209 -TKTDKPVLEPSDTGE---WEGDEDNRFKVVSKGDFDSHKV-------------HDPCII 251
Query: 338 KHLGTYYMVTSGCTGWAPNEAL-------VHAAESIMGPWEDM-GNPCIGGN 381
+ G +YM G V AE+ MGP+ NP
Sbjct: 252 PYNGKFYMYYKGERMGEEITWGGREIKHGVAIAENPMGPYVKSEYNPISNSG 303
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A Length = 314 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-15
Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 35/218 (16%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER-------PKVIYNDRTGKYVM 242
G+ +S+D W+N G V D YK V E+ P + + + G Y +
Sbjct: 44 GIQIKTSEDGVHWENMGWVF-----PSLPDWYKQYVPEKDEDHLWAPDICFYN--GIYYL 96
Query: 243 WMHIDDCNYTKAAVGVAISDY-----PTGPF-DY---LYSKRPHGFDSRDMTIFKDDDGV 293
+ + + +G+A + P + D ++S +++ D + D +G
Sbjct: 97 YYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQ 156
Query: 294 AYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVG------QHREAPALFKHLGTYYMVT 347
+L + S S + + L ++ + + + + EAP + G YY+
Sbjct: 157 PWLSFGS-FWSGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFV 215
Query: 348 S---GCTGWAPNEALVHA-AESIMGPWEDM-GNPCIGG 380
S C G + ++ I GP+ D G + G
Sbjct: 216 SFDFCCRGIESTYKIAVGRSKDITGPYVDKNGVSMMQG 253
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 Length = 293 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 9e-15
Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 24/209 (11%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER----PKVIYNDRTGKYVMWMH 245
G+ S D W + + T + + + P + Y + GKY ++
Sbjct: 36 GLRVLKSSDAKNWTVQKSIF---TTPLSWWSNYVPNYGQNQWAPDIQYYN--GKYWLYYS 90
Query: 246 IDDCNYTKAAVGVAIS-DYPTGPF----DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
+ +A+G+A S +G + + S + +++ D + D DG +L + S
Sbjct: 91 VSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGS 150
Query: 301 EDNSELHIGPLTSDYL----DVSNVVRRILVGQHREAPALFKHLGTYYMVTS---GCTGW 353
S + + L + + ++ R G EAP L G YY++ S C G
Sbjct: 151 -FWSGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGV 209
Query: 354 APN-EALVHAAESIMGPWEDM-GNPCIGG 380
+ ++SI GP+ D G + G
Sbjct: 210 NSTYKIAYGRSKSITGPYLDKSGKSMLEG 238
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} Length = 408 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-14
Identities = 51/282 (18%), Positives = 80/282 (28%), Gaps = 49/282 (17%)
Query: 117 MKTAIDPMKDNGND---SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWY---GEY 170
K A+ D GN+ F + + E + Y WY
Sbjct: 59 SKRALKWPTDLGNEWFIQFGPLQPLKGDLAYEEGVVRRDPSAIIKENGKYYVWYSKSTGP 118
Query: 171 KDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230
G K D + +S+D WTWK EG + E D + +
Sbjct: 119 TQGFGGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGPAVTRGEKGAYDD----RSVFTVE 174
Query: 231 VIYNDRTGKYVMWMHIDDCNYTKA---AVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIF 287
++ + KY + Y VG+A +D P GP+ S + +
Sbjct: 175 IMKWE--DKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPW----------TKSEEPILS 222
Query: 288 KDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVT 347
D+GV E + I D V P + + G +Y+
Sbjct: 223 PADNGVW---KGEEQDRFAVIKKGDFDSHKV-------------HDPCIIPYKGKFYLYY 266
Query: 348 SGCTGWAPNEAL-------VHAAESIMGPWEDM-GNPCIGGN 381
G V A++ GP+ NP
Sbjct: 267 KGEQMGEAITFGGRQIRHGVAIADNPKGPYVKSPYNPISNSG 308
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* Length = 318 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 46/228 (20%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER------PKVIYNDRTGKYVMW 243
G+ YSSKD W+ A E K P + + G + ++
Sbjct: 27 GITIYSSKDRVNWRYSDRAFATEP-----TWAKRVSPSFDGHLWAPDIYQHK--GLFYLY 79
Query: 244 MHIDDCNYTKAAVGVAISDY--PTGPFDYLYSKRPHGFDSR---------DMTIFKDDDG 292
+ +A+GV ++ P P Y + + +S I DD G
Sbjct: 80 YSVSAFGKNTSAIGVTVNKTLNPASPD-YRWEDKGIVIESVPQRDLWNAIAPAIIADDHG 138
Query: 293 VAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR---------------EAPALF 337
++ + S L + L D + + + EAP +
Sbjct: 139 QVWMSFGS-FWGGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFIL 197
Query: 338 KHLGTYYMVTSG---CTGWAPNEALVHA-AESIMGPWEDM-GNPCIGG 380
+ YY+ S C LV ++ + GP+ D G G
Sbjct: 198 RKGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGPYLDKTGRDMNQG 245
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* Length = 542 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 15/194 (7%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER------PKVIYNDRTGKYVMW 243
G S D+ W + +DL + Y ++ +
Sbjct: 41 GAPVLKSYDLVHWTPVTHSVPRLNFGSNYDLPSGTPGAYVKGIWASTLRYRRSNDRFYWY 100
Query: 244 MHIDDCNYTKAAV-GVAISDYPTGPFDYLYSKRPHGFDSR--DMTIFKDDDGVAYLVYSS 300
++ Y + G A+++ P + D+ D + DDD Y+ Y +
Sbjct: 101 GCVEGRTYLWTSPGGNALANNGEVPPSAWNWQHTATIDNCYYDAGLLIDDDDTMYIAYGN 160
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTS--GCTGWAPNEA 358
+ + P + + V V GQ E ++K G YY++ + +
Sbjct: 161 PTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVTRPADAEY----V 216
Query: 359 LVHAAESIMGPWED 372
L S GP+E
Sbjct: 217 LRSTTGSPFGPYEA 230
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Length = 468 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 28/172 (16%)
Query: 229 PKVIYNDRTGKYVM----WMHIDDCNYTKAAVGVAISDYPTGPF-DYLYSKRPHGFDSRD 283
P++ + D GK+ + D + ++ TG + + P S D
Sbjct: 79 PEIHFID--GKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLD 136
Query: 284 MTIFKDDDGVAYLVYSSED-----NSELHIGPLTSDYLDVSNVVR--------RILVGQH 330
T F +GV +L ++ + N+ L I + + + + +
Sbjct: 137 ATTF-VVNGVRHLAWAQRNPAEDNNTSLFIAKMANPWTISGTPTEISQPTLSWETVGYKV 195
Query: 331 REAPALFKHLGTYYMVTSGCTGWAPNEALVHA-AESIMGP-----WEDMGNP 376
E PA+ +H G ++ S N L A + W P
Sbjct: 196 NEGPAVIQHGGKVFLTYSAS-ATDANYCLGMLSASASADLLNAASWTKSSQP 246
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* Length = 535 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 16/158 (10%)
Query: 238 GKYVM---WMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVA 294
GK+ + + + + + + D G + GFD ++F D+DG
Sbjct: 83 GKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFD---PSLFHDEDGRK 139
Query: 295 YLVYSS-------EDNSELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYY 344
YLV + + + + + + I G + E P L+K G YY
Sbjct: 140 YLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYY 199
Query: 345 MVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNK 382
++T+ + A + + S+ GP+E + + +
Sbjct: 200 LLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSW 237
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 Length = 533 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 9e-07
Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 24/195 (12%)
Query: 194 YSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLER---PKVIYNDRTGKYVM---WMHID 247
+ SKD+ W L + D+ P + Y+D GK+ + + +
Sbjct: 40 HHSKDLVNWHLVAHPL---QRVSQLDMKGNPNSGGVWAPCLSYSD--GKFWLIYTDVKVV 94
Query: 248 DCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN---- 303
D + + + G + GFD ++F D DG YL+ D+
Sbjct: 95 DGAWKDCHNYLVTCETINGDWSEPIKLNSSGFD---ASLFHDTDGKKYLLNMLWDHRIDR 151
Query: 304 ---SELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNE 357
+ I + + + I G + EAP L+ YY++T+ +
Sbjct: 152 HSFGGIVIQEYSDKEQKLIGKPKVIFEGTDRKLTEAPHLYHIGNYYYLLTAEGGTRYEHA 211
Query: 358 ALVHAAESIMGPWED 372
A + + +I GP+E
Sbjct: 212 ATIARSANIEGPYEV 226
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* Length = 538 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 18/155 (11%)
Query: 238 GKYVM---WMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVA 294
GK+ + + + D + + ++ GP+ GFD ++F D G
Sbjct: 82 GKFWLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSKPILLNGAGFD---ASLFHDPSGKK 138
Query: 295 YLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EAPALFKHLGTY 343
YLV D H L +V L+G+ E P L+ Y
Sbjct: 139 YLVNMYWDQRVYHHNFYGI-ALQEYSVAEEKLIGKPEIIYKGTDIAYTEGPHLYYINDMY 197
Query: 344 YMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCI 378
Y++T+ + + +++I GP+E + +
Sbjct: 198 YLMTAEGGTTYQHSETIARSKTIHGPYEIQPDYPL 232
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 Length = 528 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 240 YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299
+ + A + + GP+ GFD ++F DDDG +LV
Sbjct: 89 IYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSSGFD---PSLFHDDDGRKWLVNM 145
Query: 300 SEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EAPALFKHLGTYYMVTS 348
D + + L + + LVG + E P L+K G YY++ +
Sbjct: 146 IWDYRKGNHPF-AGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVA 204
Query: 349 GCTGWAPNEALVHAAESIMGPWEDM-GNP 376
+ A + ++SI GP+E P
Sbjct: 205 EGGTEYEHAATLARSQSIDGPYETDPSYP 233
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 100.0 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 100.0 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 100.0 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 100.0 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 100.0 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 100.0 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 100.0 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 100.0 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 100.0 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 100.0 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 100.0 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 100.0 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 100.0 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 100.0 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 100.0 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 100.0 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 100.0 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 100.0 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 99.88 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 99.85 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 99.85 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 99.78 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 99.77 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 99.71 | |
| 2yfr_A | 571 | Levansucrase, inulosucrase; fructosyltransferase, | 99.62 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 99.6 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 99.58 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 99.53 | |
| 3vss_A | 496 | Beta-fructofuranosidase; glycoside hydrolase famil | 99.51 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 99.44 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 99.42 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 99.42 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 99.41 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 99.41 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 99.4 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 99.39 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 99.36 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 99.33 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 99.32 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 99.31 | |
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 99.31 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 99.3 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 99.28 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 99.28 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 99.27 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 99.27 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 99.27 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 99.25 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 99.25 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 99.24 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 99.24 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 99.24 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 99.23 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 99.23 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 99.2 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 99.18 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 99.13 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 99.11 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 99.08 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 99.02 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 98.98 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 98.76 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 98.71 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 98.66 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 98.57 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 98.56 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 98.52 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 98.46 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 98.34 | |
| 3vss_A | 496 | Beta-fructofuranosidase; glycoside hydrolase famil | 98.27 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 98.18 | |
| 2yfr_A | 571 | Levansucrase, inulosucrase; fructosyltransferase, | 98.15 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 98.1 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 98.03 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 97.78 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 96.51 | |
| 4hbs_A | 416 | Putative hydrolase; 5-bladed beta-propeller, struc | 94.78 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 94.53 | |
| 4hbs_A | 416 | Putative hydrolase; 5-bladed beta-propeller, struc | 94.33 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 94.06 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 93.51 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 91.95 | |
| 4fj6_A | 523 | Glycoside hydrolase family 33, candidate sialidas; | 81.47 |
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=471.84 Aligned_cols=294 Identities=33% Similarity=0.584 Sum_probs=246.2
Q ss_pred CCceeeecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 129 NDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 129 ~~~~~i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
+.+..|.||..|.|++||+|++|||+|++. +|+||||+|++... + ..++++.||+|+||+||+.+|.|
T Consensus 3 ~~~~~i~~G~~W~dt~Gn~I~aHDPsIi~~--~g~YYly~T~~~~~-~---------~~~~gi~v~sS~DLvnW~~~G~a 70 (441)
T 3nqh_A 3 KTEKVVNNGIPWFDDRGEIVNAHGACIVEE--NGRYYLFGEYKSDK-S---------NAFPGFSCYSSDDLVNWKFERVV 70 (441)
T ss_dssp CCCCEEETTSCCBCTTSCBCCCEEEEEEEE--TTEEEEEEECCCSS-C---------SSCCCEEEEEESSSSSCEEEEEE
T ss_pred cccceEECCCEeECCCCCEEEccCCEEEEE--CCEEEEEEEcCCcc-C---------CCCCCeeEEECCCCCCcEECcee
Confidence 345689999999999999999999999985 59999999975421 1 23689999999999999999999
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCC--CCccCceE
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHG--FDSRDMTI 286 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g--~~~iDp~v 286 (466)
|+..+..+ +..++.+|||+|+|++++|||||||++...++...+||||+|++|+|||++.+...+.+ ..+|||+|
T Consensus 71 L~~~~~~~---~~~~~~~WAP~V~y~~~dGkYYLyyt~~~~~~~~~~igVAtSdsP~GPwt~~gpl~~~g~~~~~IDPsv 147 (441)
T 3nqh_A 71 LPMQSSGI---LGPDRVGERVKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGT 147 (441)
T ss_dssp ECCCSSST---TSTTEEEEEEEEEECTTTCCEEEEEEEEETTSCSCEEEEEEESSTTSCCEEEEECEETTEECCCCSEEE
T ss_pred eccCCccc---cCCCCccCCceeEEEccCCEEEEEEEeCCCCCCcceEEEEEeCCCCCCceEcceeecCCCcccccCceE
Confidence 98765421 22356799999999888999999999886655668999999999999999865443333 35799999
Q ss_pred EEcCCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCC
Q 012300 287 FKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESI 366 (466)
Q Consensus 287 F~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~ 366 (466)
|+|+||++||+|++ ..|+||++|++++++++..+..+.+.|||+|||++|+|||+||.++||.++...+++|++|
T Consensus 148 F~DdDGk~YL~~g~-----~~I~eLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~~S~~~g~~~~~~~~arS~s~ 222 (441)
T 3nqh_A 148 YQDTDGTGYLLLHG-----GIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPSV 222 (441)
T ss_dssp EECTTSCEEEEEGG-----GEEEEECTTSSSEEEEEESCSTTCCCEEEEEEEETTEEEEEEECSCTTSCCCCEEEEESST
T ss_pred EEeCCCCEEEEeCC-----CcEEEeCCccccccCceEEeCCCCceECcEEEEECCEEEEEEeCCCCcCCCceEEEEeCCC
Confidence 99999999999973 3578999999999998877777778999999999999999999988887776677799999
Q ss_pred CCCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeC-CCCCCCCeeEEEEEEEcCCCCCCCccccCC
Q 012300 367 MGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN-PADLRESRYIWLPLIVRGPADRPLEYNFGF 444 (466)
Q Consensus 367 ~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~-~yi~~~d~w~-~~~~~~~R~v~lPl~~~~~~~~~~~~~~~~ 444 (466)
+|||+.+++++..+ ..+|++|+++|++++|+++ .||+|+|||. +....++||+|+||.+++.
T Consensus 223 ~GPw~~~g~i~~~~-----~~t~~sQ~t~vl~v~G~~~~~~i~~GDrW~~~~~~~~s~yvwlPl~~~~~----------- 286 (441)
T 3nqh_A 223 KGPWTRQGLFAPEG-----SLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPMQVDGT----------- 286 (441)
T ss_dssp TCCCEEEEESSCTT-----SHHHHCEEEEEEEEEETTEEEEEEEEEECCSSCHHHHCEEEEEECEEETT-----------
T ss_pred CCCceECCccCCCC-----CccCcCCCceEEEeCCCCCeEEEEeccccCCCCcCCCCceEEeeEEECCC-----------
Confidence 99999999888643 4799999999999998655 5999999999 4456789999999999862
Q ss_pred CccceeeEEec-cccCCCC
Q 012300 445 PLWSRVSIYWH-KKWRLPS 462 (466)
Q Consensus 445 ~~~~~~~~~~~-~~w~~~~ 462 (466)
.++|.|. ++|+++.
T Consensus 287 ----~~~~~~~w~~w~~~~ 301 (441)
T 3nqh_A 287 ----KLSIPEYWPSWDVDK 301 (441)
T ss_dssp ----EEECCSCCSEEETTT
T ss_pred ----EEEEEeecccCCCcc
Confidence 4677432 5898874
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=473.02 Aligned_cols=294 Identities=40% Similarity=0.792 Sum_probs=251.4
Q ss_pred CceeeecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceec
Q 012300 130 DSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVL 209 (466)
Q Consensus 130 ~~~~i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL 209 (466)
....|.||..|.|++|++|++|||+|++. +|+||||+|++... ..+++|.||+|+||+||+.++.+|
T Consensus 38 ~~~~~~~g~~w~d~~g~~i~a~DP~Ii~~--~g~YY~~~T~~~~~-----------~~~~gi~v~~S~DLv~W~~~g~~l 104 (526)
T 3vsf_A 38 AEGVIVNGTQFKDTSGNVIHAHGGGMLKH--GDYYYWYGEYRDDS-----------NLFLGVSCYRSKDLVNWEYRGEVL 104 (526)
T ss_dssp -CCEEESSBCCBCTTSCBCCCEEEEEEEE--TTEEEEEEEEECTT-----------SSEEEEEEEEESSSSSCEEEEEEE
T ss_pred CCceEeCCCccCCCCCCEEeccCCeEEEE--CCEEEEEEecCCCC-----------CCcCcEEEEECCCCCCcCCCCccC
Confidence 44578999999999999999999999995 69999999986421 124789999999999999999999
Q ss_pred cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeC-CCCCcceEEEEEeCCCCCCceeccccCCCC----------
Q 012300 210 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD-CNYTKAAVGVAISDYPTGPFDYLYSKRPHG---------- 278 (466)
Q Consensus 210 ~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~-~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g---------- 278 (466)
...+... + ....+|||+|+|++++|||||||++.. .++...+||||+|++|+|||++.+...|..
T Consensus 105 ~~~~~~~---~-~~~~~WAP~v~~~~~~Gkyymy~~~~~~~~~~~~~igvats~~p~Gpw~~~g~~~p~~~~g~~~~~~~ 180 (526)
T 3vsf_A 105 SRNSAPE---L-NHCNIERPKVMYNASTGEFVMWMHWENGINYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLP 180 (526)
T ss_dssp ETTSSGG---G-SSCEEEEEEEEECTTTCCEEEEEEEECSSCSCCCEEEEEEESSSSSCCEEEEEECSSCTTCCEETTEE
T ss_pred CCCCCcC---c-ccCceECCEEEEECCCCEEEEEEEeeCCCCCCcceEEEEEcCCCCCCCEeccccccccccccccCCCC
Confidence 8755321 1 245699999999878999999999873 345568999999999999999875444432
Q ss_pred -CCccCceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCc
Q 012300 279 -FDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNE 357 (466)
Q Consensus 279 -~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~ 357 (466)
..+|||+||+|+||+.||+|+++.++.|+++||++|++.+.++...++.+...|||+|||++|+|||+||++++|.++.
T Consensus 181 ~~~~iDp~vf~D~dG~~Yl~~~~~~~~~i~i~~l~~d~~~~~~~~~~~~~g~~~EgP~i~k~~G~YYL~~S~~tg~~~~~ 260 (526)
T 3vsf_A 181 GYMSRDCNVFVDTDGKGYFISAANENMDLHLYELTPDYKNIASLKAKLFVGQQREAPCLIKRNGYYYLITSGCTGWNPNQ 260 (526)
T ss_dssp SCCCCSEEEEECTTSCEEEEEEETTTTEEEEEEECTTSSSEEEEEEEESTTSCCEEEEEEESSSCEEEEEECCCTTSCCC
T ss_pred CcccccccEEECCCCCEEEEEEecCCCceEEEEcCCCcccccCceEEeCCCCCcCCeEEEEECCEEEEEEcCCCCcCCCc
Confidence 6789999999999999999999877899999999999999998888888889999999999999999999988888766
Q ss_pred EEEEEeCCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeCCC---CCCCCeeEEEEEEEcCC
Q 012300 358 ALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWNPA---DLRESRYIWLPLIVRGP 433 (466)
Q Consensus 358 ~v~~~Sds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~-~yi~~~d~w~~~---~~~~~R~v~lPl~~~~~ 433 (466)
..+++|++|+|||++.++++ . ..+|++|+++|++++|+++ .||||+|||.+. ++.++||||+||+|++
T Consensus 261 ~~~a~S~s~~GPw~~~~~~~--~-----~~~~~~q~~~v~~~~g~~~~~~~~~~drw~~~~~~~~~~~~yvwlP~~~~~- 332 (526)
T 3vsf_A 261 AKYAYSKDLASGWSQLYNLG--N-----STTYRSQPTFIIPVQGSSGTSYLYMGDRWAGAWGGKVNDSQYVWLPLNFIS- 332 (526)
T ss_dssp EEECEESCSSSCCCCCEEES--S-----TTTTTCEEEEEEEEECSSCEEEEEEEEECGGGGTCCGGGCEEEEEEEEESS-
T ss_pred eEEEEeCCCCCCceeCCccC--C-----CCccCCCCeeEEEecCCCCceEEEEeeeccCcCCCCCCCCceEEEEEeeCC-
Confidence 66679999999999998775 2 4789999999999999765 799999999864 5789999999999975
Q ss_pred CCCCCccccCCCccceeeEEeccccCCC
Q 012300 434 ADRPLEYNFGFPLWSRVSIYWHKKWRLP 461 (466)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 461 (466)
++ .++|.|+++|+++
T Consensus 333 -~~------------~~~~~w~d~w~~~ 347 (526)
T 3vsf_A 333 -DT------------TLELPYYDSVKID 347 (526)
T ss_dssp -SS------------CEECCCCSEEEEE
T ss_pred -CC------------ceEEecccceeec
Confidence 23 4799999999974
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=352.52 Aligned_cols=269 Identities=23% Similarity=0.293 Sum_probs=204.3
Q ss_pred CCCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCC-cccccc
Q 012300 144 EGAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEE-TNETHD 219 (466)
Q Consensus 144 ~GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~-~~~~~~ 219 (466)
..|||+. +||.|++++++|+||||+|.... .+| ....+.+++|+||+||+.++.+|...+ ..|
T Consensus 6 ~~NPi~~g~~~DP~i~~~~~dg~yyl~~t~~~~----~~~------~~~~~~~~~S~DLv~W~~~g~~l~~~~~~~~--- 72 (311)
T 3qz4_A 6 SGNPILPGFHADPEVLYSHQTKRYYIYPTSDGF----PGW------GGSYFKVFSSKNLKTWKEETVILEMGKNVSW--- 72 (311)
T ss_dssp CCSCCSSSSEEEEEEEEETTTTEEEEEEEECSS----GGG------CCCEECCEEESSSSSCEECCCCEEBTTTBTT---
T ss_pred CCCCccCCCcCCceEEEECCCCEEEEEEecCCC----CCC------CCcEEEEEECCCCCCcEECceecccccCCCc---
Confidence 4677764 68899987556999999996421 112 124589999999999999999987654 233
Q ss_pred cCCCCeeeeceEEEEc--cCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc-c---CCCC-CCccCceEEEcC-C
Q 012300 220 LYKLNVLERPKVIYND--RTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS-K---RPHG-FDSRDMTIFKDD-D 291 (466)
Q Consensus 220 ~~~~~~iWAP~viyn~--~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~-~---~p~g-~~~iDp~vF~Dd-D 291 (466)
..+.+|||+|++.+ .+|+|||||++...+....+|+||+|++|+|||++.+. . .+.| ..+|||+||+|+ |
T Consensus 73 --~~~~~wAP~v~~~~~~~~Gkyylyyt~~~~~~~~~~i~va~s~~p~Gpw~~~~~p~~~~~~~g~~~~iDp~vf~dd~d 150 (311)
T 3qz4_A 73 --ANGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVS 150 (311)
T ss_dssp --EEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSCEEEEEEESSTTCCCEECSSCSBCSCTTSSSBSCCCEEEECTTT
T ss_pred --ccCCcCCCeeEEeeecCCCEEEEEEEeccCCCCCeeEEEEEECCCCCCceECCcceEcCCCCCCcccccccEEEECCC
Confidence 24679999999831 18999999998765444689999999999999998543 1 1223 568999999998 9
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeecC--------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EE
Q 012300 292 GVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVG--------QHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HA 362 (466)
Q Consensus 292 G~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g--------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~ 362 (466)
|++||+|++ +.|.+++|++|++++.++...++.+ ...|||+|+|++|+|||+||.+.++.++|.+. ++
T Consensus 151 G~~yl~~g~---~~i~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~g~YyL~~s~~~~~~~~y~~~~~~ 227 (311)
T 3qz4_A 151 GKSYLYWGN---GYMAGAELNDDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGSPNYHVVYGT 227 (311)
T ss_dssp CCEEEEECB---SSCEEEEBCTTSSSBCGGGCEECCCCCCCTTTTCCCEEEEEEEETTEEEEEEEESCTTSTTCEEEEEE
T ss_pred CcEEEEEcC---CCEEEEEeCCcccccCCCceEEeCCCCCcccccceeeccEEEEECCEEEEEEEcCCCCCCCceEEEEE
Confidence 999999985 6799999999999998876666532 37999999999999999999776666677775 48
Q ss_pred eCCCCCCceeCC-CccccCCccceeeccCCCceEEEcccCCcccEEEEEe---EeCCCCCCCCee-EEEEEEEcC
Q 012300 363 AESIMGPWEDMG-NPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMAD---RWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 363 Sds~~GPw~~~g-nPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d---~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|++|+|||++.+ +|++..+.. ...++.+|++|++.++.++|||+||. +..+......|. .+.||.|++
T Consensus 228 S~~~~GPw~~~~~~pil~~~~~--~~~~g~gH~~~~~~~~g~~w~~~yh~~~~~~~~~~~~~~R~~~~~~~~w~~ 300 (311)
T 3qz4_A 228 AQSPLGPIEVAKEPIVLIQNPK--EEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRMEFNP 300 (311)
T ss_dssp ESSTTCCCEEEEEEEEECCBGG--GTBEEEEEEEEEECTTSSCEEEEEEEECGGGTTSSGGGCEEEEEEEECBCT
T ss_pred cCCCCCCCEeCCCCcEEecCCC--CceEcCCCCeEEEcCCCCEEEEEEecCcccCCCCCCCCCceEEEEEEEECC
Confidence 999999999984 566643221 23345667788887764578999997 343333345676 558999986
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=344.20 Aligned_cols=259 Identities=22% Similarity=0.372 Sum_probs=198.7
Q ss_pred CCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 142 DTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 142 dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
+...++|..+||.|++. +|+||||+|.... ..+++.+++|+||+||+.++.+|...+ .|
T Consensus 16 ~~~~~~~~~~DP~i~~~--~g~yyl~~t~~~~-------------~~~~i~~~~S~DLv~W~~~g~~l~~~~-~~----- 74 (306)
T 3kst_A 16 SVETNYLPIADPYVMFY--NNKYYAYGTGGTT-------------AGEGFACFSSDDLKNWKREGQALSATD-SY----- 74 (306)
T ss_dssp CEEESSBCCEEEEEEEE--TTEEEEEEESCCS-------------SSSEEEEEEESSSSEEEEEEEEEEGGG-SS-----
T ss_pred eecCCcccCCCCEEEEE--CCEEEEEEecCCc-------------CCCCEEEEEeCCccccEECceecCCCC-cc-----
Confidence 33345677899999986 6999999996431 246799999999999999999987654 22
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEec
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
....+|||+|++.+++|+|||||++. .+|+||+|++|+|||++..........+|||+||+|+||++||+|++.
T Consensus 75 ~~~~~wAP~v~~~~~~g~~yl~yt~~------~~i~va~s~~p~Gpw~~~~~~p~~~~~~iDp~vf~D~dG~~Yl~~~~~ 148 (306)
T 3kst_A 75 GTWGFWAPEVYYVESKKKFYLFYSAE------EHICVATSTTPEGPFRQEVKQPIWSEKSIDTSLFIDDDGTPYLYFVRF 148 (306)
T ss_dssp CSSCCEEEEEEEETTTTEEEEEEEET------TEEEEEEESSTTCCCBCSSCCCSSSSCCEEEEEEECTTSCEEEEEEEE
T ss_pred cccccccCeEEEECCCCEEEEEEECC------CcEEEEEcCCCCCCcEeCCCccccCCCcccceEEEeCCCCEEEEEEEe
Confidence 34679999999867799999999974 479999999999999986422112257899999999999999999875
Q ss_pred CC-CcEEEEEcCCCCCCccccEEE-ee---------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeCCCCCC
Q 012300 302 DN-SELHIGPLTSDYLDVSNVVRR-IL---------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAESIMGP 369 (466)
Q Consensus 302 ~n-~~i~i~~Ls~D~~~~~g~~~~-i~---------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sds~~GP 369 (466)
.+ ..|++++|++|++++.++... +. .+...|||+|+|++|+|||+||.+.++..+|.+.+ +|++|+||
T Consensus 149 ~~g~~i~~~~ls~d~~~~~~~~~~~~~~~~~~w~~~~~~~~EgP~i~k~~G~YYL~~S~~~~~~~~y~v~~a~S~s~~GP 228 (306)
T 3kst_A 149 TDGNVIWVAQMTDDLMSIKTETLNQCIKAEVSWELLQGKVAEGPSLLKKNGVYYLIYSANHYENKGYGVGYATSDTPMGP 228 (306)
T ss_dssp SSSEEEEEEEBCTTSSCBCGGGCEEEECCCSGGGCSSSSBEEEEEEEEETTEEEEEEEESCTTSTTCEEEEEEESSTTCC
T ss_pred CCCCEEEEEEeCcccccccCcceeeeccCCccceecCCCceecceEEEECCEEEEEEEeCCCCCCCceEEEEEeCCCCCC
Confidence 43 358999999999988765432 21 14689999999999999999997666667787664 89999999
Q ss_pred ceeC-CCccccCCccceeeccCCCceEEEc-ccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 370 WEDM-GNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 370 w~~~-gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|++. ++||+..+.. ....+.+|+++++ .+| +||++||.+.... ....|. ...||.|++
T Consensus 229 w~~~~~~pil~~~~~--~~~~g~GH~~~v~~~~G--~~~~vyh~~~~~~-~~~~R~~~~~~v~w~~ 289 (306)
T 3kst_A 229 WVKYSKNPLLQGDAA--TGLVGTGHGAPFQCKDG--SWKYIFHAHWSAA-EIQPRTSYIKDFAISD 289 (306)
T ss_dssp CEECTTCCSBSSBTT--TTBCSCEEEEEEECTTS--CEEEEEEECSSSS-CCCSCEEEEEEEEECT
T ss_pred CEeCCCCeeEeecCC--CceecCCCCceEECCCC--CEEEEEecccCCC-CCCCceEEEEEEEECC
Confidence 9994 8899874211 2335566666664 455 6899998664433 234566 568999986
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=341.42 Aligned_cols=258 Identities=23% Similarity=0.311 Sum_probs=194.1
Q ss_pred CCeEEe----eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccccc
Q 012300 145 GAPIQA----HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL 220 (466)
Q Consensus 145 GnpI~a----hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~ 220 (466)
.|||+. +||+|++. +|+||||+|++.... +.....++++.||+|+||+||+.++.+|...+..|
T Consensus 3 ~NPil~~~~~~DP~i~~~--~g~yYl~~t~~~~~~------~~~~~~~~~~~v~~S~DLv~W~~~g~~l~~~~~~~---- 70 (307)
T 3qee_A 3 ENPIFTDVFTADPAALVH--KGRVYLYAGRDEAPD------NTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTW---- 70 (307)
T ss_dssp CSSSCSSSEEEEEEEEEE--TTEEEEEEEEECCSS------SSSCCCEEEEEEEEESSSSSCEEEEEEEEGGGSTT----
T ss_pred CCCCCCCCccCCCceEEE--CCEEEEEEccCcccC------CccccccCcEEEEECCCCCCceECccccccCCCCc----
Confidence 366653 68999985 589999999653210 01123567899999999999999999998654444
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeCCCCC-cceEEEEEeCCCCCCceec-ccc-C--------CCCCCccCceEEEc
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT-KAAVGVAISDYPTGPFDYL-YSK-R--------PHGFDSRDMTIFKD 289 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~-~~~IGVA~SdsP~GPf~~~-~~~-~--------p~g~~~iDp~vF~D 289 (466)
..+.+|||+|++ ++|+|||||++...+.. .++|+||+|++|+|||++. +.. . +.+..+|||+||+|
T Consensus 71 -~~~~~WAP~i~~--~~Gkyylyyt~~~~~~~~~~~i~va~s~~p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~D 147 (307)
T 3qee_A 71 -AKGDAWASQVIE--RNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFID 147 (307)
T ss_dssp -EEEEEEEEEEEE--ETTEEEEEEEEEECTTSCSEEEEEEEESSTTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEEC
T ss_pred -ccCCccCceEEE--ECCEEEEEEEeccCCCCCceEEEEEEECCCCCCCEeCCCCeeEecCccccCCCCcCcccCceEEC
Confidence 246799999998 89999999998754322 4789999999999999984 321 1 12356899999999
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEee-cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCC
Q 012300 290 DDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIM 367 (466)
Q Consensus 290 dDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~-~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~ 367 (466)
+||++||+|++ ..+.+++|++|++++.++...+. .+...|||+|+|++|+|||+||.+ .++.+. ++|++|+
T Consensus 148 ddG~~Yl~~g~---~~i~~~~l~~d~~~~~g~~~~i~~~~~~~EgP~i~k~~g~YyL~~s~~----~~~~~~~~~s~~~~ 220 (307)
T 3qee_A 148 DDGQAYLFWGN---TRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMG----FPEKIGYAMGKSIK 220 (307)
T ss_dssp TTSCEEEEECS---SSCEEEEECTTSSSEEEEEEECCCCTTEEEEEEEEECC-CEEEEEEET----TTTEEEEEEESSTT
T ss_pred CCCCEEEEEeC---CcEEEEEECCccccccCceEEeCCCCCccCceEEEEECCEEEEEEECC----CCcEEEEEECCCCC
Confidence 99999999985 46899999999999998887765 457899999999999999999974 245555 5899999
Q ss_pred CCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeC-CCCCCCCee-EEEEEEEcC
Q 012300 368 GPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN-PADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 368 GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~-~~~~~~~R~-v~lPl~~~~ 432 (466)
|||++.+ ++..+ ....+.+|++|++.+| +||++||..-. ..+....|. .+.||.|++
T Consensus 221 GP~~~~~--il~~~----~~~~g~gH~~~v~~~G--~~~~~yh~~~~~~~g~~~~R~~~~~~~~w~~ 279 (307)
T 3qee_A 221 GPWVYKG--ILNEV----AGNTPTNHQAIIEFNN--KHYFIYHTGAGRPDGGQYRRSVSIDELFYNP 279 (307)
T ss_dssp CCCEEEE--EEECC----CBTCSCCCCEEEEETT--EEEEEEEESCCTTTCBTTBCEEEEEEECBCT
T ss_pred CCcEECC--EEecC----CCcccCCCccEEEeCC--cEEEEEccCcccCCCCCcceEEEEEEEEECC
Confidence 9999984 44432 1234455556777666 78998886543 222334576 568999976
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=325.34 Aligned_cols=257 Identities=18% Similarity=0.203 Sum_probs=194.4
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccc--cCCCCe
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHD--LYKLNV 225 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~--~~~~~~ 225 (466)
|..+||+|++. +|+||||+|... .++++.+++|+||+||+.++.+|.... .|... +...+.
T Consensus 10 ~~~~DP~i~~~--~g~yYl~~t~~~--------------~~~~i~i~~S~DLv~W~~~g~~l~~~~-~w~~~~~~~~~~~ 72 (293)
T 1uv4_A 10 ELLHDPTMIKE--GSSWYALGTGLT--------------EERGLRVLKSSDAKNWTVQKSIFTTPL-SWWSNYVPNYGQN 72 (293)
T ss_dssp EECSSCEEEEE--TTEEEEEEECCT--------------TSSBEEEEEESSSSSCEEEEEETSSCC-GGGGGTSTTCCSB
T ss_pred ccCCCCeEEEE--CCEEEEEEcCCC--------------CCCceEEEECCCCCCccCCCccCCCCC-cccccccccCCCc
Confidence 56789999986 699999999642 146899999999999999999998652 23211 112467
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC-CCceecccc-C---CCCCCccCceEEEcCCCcEEEEEEe
Q 012300 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT-GPFDYLYSK-R---PHGFDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~-GPf~~~~~~-~---p~g~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
+|||+|++ .+|+|||||++...+....+|+||+|++|+ |||++.+.. . +.+..+|||+||+|+||+.||+|++
T Consensus 73 ~wAP~v~~--~~G~yylyyt~~~~~~~~~~i~va~s~~p~~Gpw~~~~~~l~~~~~~~~~~iDp~vf~d~dG~~Yl~~g~ 150 (293)
T 1uv4_A 73 QWAPDIQY--YNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGS 150 (293)
T ss_dssp CEEEEEEE--ETTEEEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECB
T ss_pred eecceEEE--ECCEEEEEEEecCCCCCcceEEEEECCCCCCCCCccCCccEecCCCCCCCCCCCCeEECCCCCEEEEEEe
Confidence 99999998 699999999987543346789999999998 999986432 1 1245789999999999999999987
Q ss_pred cCCCcEEEEEcCCCCCCccccEEEeec----CceeeeeEEEEECCEEEEEEeCC---CCCCCCcEEE-EEeCCCCCCcee
Q 012300 301 EDNSELHIGPLTSDYLDVSNVVRRILV----GQHREAPALFKHLGTYYMVTSGC---TGWAPNEALV-HAAESIMGPWED 372 (466)
Q Consensus 301 ~~n~~i~i~~Ls~D~~~~~g~~~~i~~----g~~~EgP~ifK~~G~YYL~yS~~---tg~~~n~~v~-~~Sds~~GPw~~ 372 (466)
.. +.|.+++|++|+.++.+++..+.. +...|||+|+|++|+|||+||.. .|+..+|.+. ++|++|+|||++
T Consensus 151 ~~-~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~~EgP~i~k~~g~yyL~~s~~~~~~g~~~~y~~~~~~s~~~~GP~~~ 229 (293)
T 1uv4_A 151 FW-SGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLD 229 (293)
T ss_dssp ST-TCEEEEEECTTTCSEEEEEEEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBC
T ss_pred cC-CCEEEEEECchhCccCCcceEEeecCCCCCccCccEEEEECCEEEEEEEeCCCcCCCCCcceEEEEEeCCCCCCCCc
Confidence 53 679999999999888877766652 46899999999999999999853 2455667655 589999999999
Q ss_pred C-CCccccCCc--cce--eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEc
Q 012300 373 M-GNPCIGGNK--VFR--LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVR 431 (466)
Q Consensus 373 ~-gnPi~~~~~--~~~--~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~ 431 (466)
. ++|++.+.. ++. ...++.+|++++ | ++|++||.+.... ..+|. .+.||.|+
T Consensus 230 ~~~~p~~~~~g~~~~~~~~~~~g~gH~~~~---~--~~~~~yh~~~~~~--~g~r~~~~~~~~w~ 287 (293)
T 1uv4_A 230 KSGKSMLEGGGTILDSGNDQWKGPGGQDIV---N--GNILVRHAYDAND--NGIPKLLINDLNWS 287 (293)
T ss_dssp TTSCBGGGTCCEEEECCCSSEEEEEEEEEE---T--TTEEEEEEEETTT--TTEEEEEEEECBCT
T ss_pred cCCCeeecCCCcEeecCCCcEEcCCCccee---C--CCEEEEEeEeCCC--CCeEEEEEEEEEEE
Confidence 8 899875321 110 112334556677 4 6889998765322 23455 46899996
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=317.57 Aligned_cols=255 Identities=17% Similarity=0.213 Sum_probs=187.4
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccc-cC--CCCee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHD-LY--KLNVL 226 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~-~~--~~~~i 226 (466)
.+||.|++. +|+||||+|. +++.+++|+||+||+.++.+|..... |... .. ..+.+
T Consensus 24 ~~DP~i~~~--~g~yYl~~t~------------------~~i~i~~S~DLv~W~~~g~~l~~~~~-~~~~~~~~~~~~~~ 82 (314)
T 3cu9_A 24 AHDPVIAKE--GSRWYVFHTG------------------SGIQIKTSEDGVHWENMGWVFPSLPD-WYKQYVPEKDEDHL 82 (314)
T ss_dssp CSSCEEEEE--TTEEEEEESE------------------ETSEEEEESSSSEEEEEEESCSSCCT-THHHHCTTCCSCEE
T ss_pred cCCCEEEEE--CCEEEEEECC------------------CCeeEEECcCCCCccCCCcccCCcch-hhhccCCCcccCce
Confidence 579999986 5899999874 25889999999999999999876532 3210 00 14689
Q ss_pred eeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCC---ceeccccC----CCCCCccCceEEEcCCCcEEEE
Q 012300 227 ERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGP---FDYLYSKR----PHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 227 WAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~GP---f~~~~~~~----p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
|||+|++ .+|+|||||++...+....+||||+|++ |.|| |++.+... .....+|||+||+|+||+.||+
T Consensus 83 wAP~v~~--~~g~yylyyt~~~~~~~~~~igva~s~~~dP~gp~~~w~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Yl~ 160 (314)
T 3cu9_A 83 WAPDICF--YNGIYYLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLS 160 (314)
T ss_dssp EEEEEEE--ETTEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEE
T ss_pred ecCcEEE--ECCEEEEEEEeccCCCCCceEEEEEeCCCCCCCCCcCcccCCeEecCCCCCCCCccCCCeEEcCCCCEEEE
Confidence 9999998 6999999999875433467899999998 8999 99864321 1235689999999999999999
Q ss_pred EEecCCCcEEEEEcCCCCCCcc--ccEEEee----cCceeeeeEEEEECCEEEEEEeCC---CCCCCCcEEE-EEeCCCC
Q 012300 298 YSSEDNSELHIGPLTSDYLDVS--NVVRRIL----VGQHREAPALFKHLGTYYMVTSGC---TGWAPNEALV-HAAESIM 367 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~~~~~--g~~~~i~----~g~~~EgP~ifK~~G~YYL~yS~~---tg~~~n~~v~-~~Sds~~ 367 (466)
|++.. +.|.+++|++|+..+. +....+. .+...|||+|+|++|+|||+||.. .|...+|.+. ++|++|+
T Consensus 161 ~g~~~-~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyL~~s~~~~~~g~~~~y~~~~~~s~s~~ 239 (314)
T 3cu9_A 161 FGSFW-SGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAVGRSKDIT 239 (314)
T ss_dssp ECBST-TCEEEEECCTTTCSCCTTCCCEEEECCSSSSCCEEEEEEEEETTEEEEEEEESCCSSGGGCCCEEEEEEESSTT
T ss_pred EeccC-CcEEEEEECcccCcccCCCceEEecccCCCCCccCccEEEEECCEEEEEEEcCCcccCCCCcceEEEEEeCCCC
Confidence 99753 5799999999876544 2333343 235799999999999999999953 2445566655 5899999
Q ss_pred CCceeC-CCccccCCc--cce--eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNK--VFR--LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~--~~~--~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|||++. ++|++.... ++. ..-++.+|.++++.+| +||++||.+.... ..+|. .+.||.|++
T Consensus 240 GP~~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~~~~~~g--~~~~~yh~~~~~~--~g~r~~~~~~~~w~~ 306 (314)
T 3cu9_A 240 GPYVDKNGVSMMQGGGTILDEGNDRWIGPGHCAVYFSGV--SAILVNHAYDALK--NGEPTLQIRPLYWDD 306 (314)
T ss_dssp SCCBCTTSCBGGGTCCEEEECCCSSEEEEEEEEEEEETT--EEEEEEEEEETTT--TTEEEEEEEEEEECT
T ss_pred CCCCcCCCCccccCCCcEeecCCCcEEcCCCCEEEEcCC--CEEEEEEeeeCCC--CCeeEEEEEEEEECC
Confidence 999998 889875321 110 1123344556665566 6899998766543 23456 479999976
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=336.68 Aligned_cols=277 Identities=18% Similarity=0.178 Sum_probs=196.0
Q ss_pred CCCCeEEe----eCCceEEECCCCEEEEEEEeCCCCC-ccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccc
Q 012300 143 TEGAPIQA----HGGGILYDERSRTYFWYGEYKDGPT-YHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNET 217 (466)
Q Consensus 143 t~GnpI~a----hd~~Ii~~~~~g~YYlygT~~~~~~-~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~ 217 (466)
+.+|||+. +||+|++. +|+||||+|++.... ....++...+..+++|.||+|+||+||+.++.+|........
T Consensus 11 ~~~NPi~~~~~~~DP~i~~~--~g~yYly~t~~~~~~~~~g~~~~~~~~~~~~i~i~~S~DLv~W~~~g~v~~~~~~~~~ 88 (487)
T 3c7f_A 11 GNSNPLIDHHLGADPVALTY--NGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGAN 88 (487)
T ss_dssp TCCCSSCCSSCCEEEEEEEE--TTEEEEEEECCCCEECTTSCEECCCSTTCCSEEEEEESSSSSEEEEEEECCBCSTTGG
T ss_pred CCCCCccCCCcCCCCCeEEE--CCEEEEEEcCCcccccccccccccccccccceEEEECCCCcCcEEccccccCCccccc
Confidence 34678764 68999986 599999999753100 000011122345789999999999999999999876532100
Q ss_pred -----cccCCCCeeeeceEEEEccC--CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-cc-cCC---CC----CCc
Q 012300 218 -----HDLYKLNVLERPKVIYNDRT--GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YS-KRP---HG----FDS 281 (466)
Q Consensus 218 -----~~~~~~~~iWAP~viyn~~~--GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~~-~~p---~g----~~~ 281 (466)
..+ ...+|||+|++++.+ |+|||||+.. .++|+||+|++|+|||++. +. ... .+ ..+
T Consensus 89 ~g~~~~~w--~~~~WAP~v~~~~~~g~g~yylyyt~~-----~~~i~va~s~~p~Gpw~~~~g~pli~~~~~g~~~~~~~ 161 (487)
T 3c7f_A 89 GGRGIAKW--AGASWAPSIAVKKINGKDKFFLYFANS-----GGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWL 161 (487)
T ss_dssp GGTCSBTT--CSCCEEEEEEEEEETTEEEEEEEEEST-----TBCEEEEEESSTTCCCBCSSSSCSBCTTSTTCTTCSSB
T ss_pred ccccccCc--cccCcchheEEEecCCCCeEEEEEEcC-----CcEEEEEEeCCCCCCcccCCCCeEeecCCCCccCCCCc
Confidence 011 236899999984334 6999999863 2679999999999999975 21 111 12 358
Q ss_pred cCceEEEcCCCcEEEEEEecC-------------CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEe
Q 012300 282 RDMTIFKDDDGVAYLVYSSED-------------NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTS 348 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~~-------------n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS 348 (466)
|||+||+|+||++||+|++.. +..+++++|++|++++.++...+..+..+|||+|+|++|+|||+||
T Consensus 162 iDp~vf~DddG~~Yl~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~g~~~~i~~p~~~Egp~i~k~~G~YYl~ys 241 (487)
T 3c7f_A 162 FDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDSGLHKYNGTYYYSYC 241 (487)
T ss_dssp CCCEEEECTTSCEEEEEECCCSSTTSCCHHHHHCCCCEEEEEECTTSSSEEEEEEEECCTTEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEcCCCCEEEEECCcccCccccccccccCCCceEEEEECCCeeeccCccEEecCCceEecceEEEECCEEEEEEE
Confidence 999999999999999999731 2468899999999999988877766678999999999999999998
Q ss_pred CCCCCC-----CCcEE-EEEeCCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC----CC
Q 012300 349 GCTGWA-----PNEAL-VHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA----DL 418 (466)
Q Consensus 349 ~~tg~~-----~n~~v-~~~Sds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~----~~ 418 (466)
...+.+ +.+.+ +++|++|+|||++. +|++..... .....+++|++|++.+| +|||+||.+-... ..
T Consensus 242 ~~~~~t~~~~~~~~~i~~~~S~s~~GP~~~~-~~il~~~~~-~~~~~g~gH~~v~~~~G--~w~~~yh~~~~~~~~~g~~ 317 (487)
T 3c7f_A 242 INFGGTHPADKPPGEIGYMTSSSPMGPFTYR-GHFLKNPGA-FFGGGGNNHHAVFNFKN--EWYVVYHAQTVSSALFGAG 317 (487)
T ss_dssp ECSSSCCCTTSCTTSEEEEEESSTTCCCEEE-EEEECCHHH-HHSSCCCCCEEEEEETT--EEEEEEEESHHHHHHHSSC
T ss_pred CCCCCCcccCCCCceeEEEEcCCCCCCceEC-ceeccCCCc-ccCCCCCCCceEEEECC--eEEEEEecccccccccCCC
Confidence 642111 23444 45899999999998 566653211 01234456678888766 7999998754321 11
Q ss_pred CCCee-EEEEEEEcC
Q 012300 419 RESRY-IWLPLIVRG 432 (466)
Q Consensus 419 ~~~R~-v~lPl~~~~ 432 (466)
...|. .+.||.|++
T Consensus 318 ~~~R~~~i~~v~w~~ 332 (487)
T 3c7f_A 318 KGYRSPHINKLVHNA 332 (487)
T ss_dssp TTCCEEEEEECCBCT
T ss_pred CCccceEEEEEEECC
Confidence 23465 568999975
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=336.69 Aligned_cols=244 Identities=15% Similarity=0.190 Sum_probs=180.7
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC-
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY- 221 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~- 221 (466)
|||+. +||+|++. +++||||+|... .++++.||+|+||+||+..+.+|+..+..+..++.
T Consensus 10 NPil~g~~~DP~iir~--~~~YY~~~st~~--------------~~pg~~i~~S~DLvnW~~~g~~l~~~~~~~~~~~~~ 73 (542)
T 3zxk_A 10 NPVLWEDHPALEVFRV--GSVFYYSSSTFA--------------YSPGAPVLKSYDLVHWTPVTHSVPRLNFGSNYDLPS 73 (542)
T ss_dssp SCSCCSCCCSCEEEEE--TTEEEEECCCBT--------------EESEEEEEEESSSSSCEEEEEEESSCCSCGGGGCCS
T ss_pred CCccCCCCCCCeEEEE--CCEEEEEEecCc--------------cCCCeEEEEcCCCCCccccccccccCCccccccccC
Confidence 66654 69999986 589999988532 25789999999999999999999764322211111
Q ss_pred -----CCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC------------ceeccccCCCCCCccCc
Q 012300 222 -----KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP------------FDYLYSKRPHGFDSRDM 284 (466)
Q Consensus 222 -----~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GP------------f~~~~~~~p~g~~~iDp 284 (466)
.++.+|||+|+|...||+|||||+++ .+|+||+|++|+|| |++.... ....|||
T Consensus 74 ~~~~~~~~~~WAP~i~~~~~~G~fYly~~~~------~~~~v~~a~~p~GPf~~g~~l~~~~~ws~~~~~---~~~~iDp 144 (542)
T 3zxk_A 74 GTPGAYVKGIWASTLRYRRSNDRFYWYGCVE------GRTYLWTSPGGNALANNGEVPPSAWNWQHTATI---DNCYYDA 144 (542)
T ss_dssp STTTTTTCSBCSCEEEEETTTTEEEEEEEET------TEEEEEEEECTTGGGTTTCCCGGGCCCEEEEEE---SSCCTTC
T ss_pred CcccccCCceECCcEEEECCCCEEEEEEECC------CcEEEEEECCCCCCccccccccccCcccccccc---CCCCCCC
Confidence 24679999999955569999999874 57999999999999 6654322 2568999
Q ss_pred eEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE
Q 012300 285 TIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH 361 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~ 361 (466)
++|+|+||+.||+|+ ++.|+++||++|++++.++.+.|+. +.+.|||+|+|+||+|||+||...+ ...++
T Consensus 145 ~~f~DdDG~~Yl~~g---~~~i~~~eL~~d~~~~~~~~~~i~~~~~g~~~EgP~i~k~~G~YYL~~s~~~~----~~~v~ 217 (542)
T 3zxk_A 145 GLLIDDDDTMYIAYG---NPTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVTRPAD----AEYVL 217 (542)
T ss_dssp EEEECTTSCEEEEEC---SSSEEEEEECTTSSSEEEEEEEEECCTTCCCCEEEEEEEETTEEEEEEEETTT----EEEEE
T ss_pred cEEEcCCCCEEEEEc---CCCEEEEEeCCccCcccCCcEEEEeCCCCccccccEEEEECCEEEEEEEeCCC----CEEEE
Confidence 999999999999997 4689999999999999888776653 3489999999999999999996321 23345
Q ss_pred EeCC--CCCCceeCCCccccC--CccceeeccCCC-ceEEEcc-cCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 362 AAES--IMGPWEDMGNPCIGG--NKVFRLTTFFAQ-STYVIPL-AGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 362 ~Sds--~~GPw~~~gnPi~~~--~~~~~~~t~~sq-~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
+|++ |+|||++.+ ++.. +++ ...++. |+.+++. +| +||++||..-.+ ..|. .+.||.|++
T Consensus 218 rs~s~s~~GPy~~~~--vl~~~~~~v---~~~G~~~hg~iv~~~~G--~w~~~~~~~~~~----~gR~~~l~~v~w~~ 284 (542)
T 3zxk_A 218 RSTTGSPFGPYEART--LVSRIQGPL---ANAGFAHQGGIVDAPDG--TWHYVAFMDAYP----GGRIPVVAPLRWTA 284 (542)
T ss_dssp EESSSSTTCCEEEEE--EEESCCCSS---SSSCCCEEEEEEECTTS--CEEEEEEEECTT----SCEEEEEEEEEECT
T ss_pred EEcCCCCCCCceECC--EecCCCcce---eccCCCCCCEEEECCCC--CEEEEEEccCCC----CCceEEEEEeEECC
Confidence 7877 999999873 4432 121 122222 3445555 56 688777753322 3466 568999975
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=333.92 Aligned_cols=262 Identities=16% Similarity=0.147 Sum_probs=191.7
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+. +||+|++. +++|||++|... .+++|.|++|+||+||+.++.+|...+.........
T Consensus 5 NPil~~~~~DP~i~~~--~~~yY~~~s~~~--------------~~~gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~ 68 (538)
T 3c2u_A 5 NPVLKGFNPDPSIVRA--GDDYYIATSTFE--------------WFPGVQIHHSKDLVHWHLVAHPLSTTEFLDMKGNPD 68 (538)
T ss_dssp SCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECSBCSTTTCCCTTCCT
T ss_pred CCccCCCCCCCEEEEE--CCEEEEEEccCC--------------CCCCeEEEECCCCCCcEECccccCCcccccccCCCC
Confidence 66653 79999986 589999987531 257899999999999999999987654211111123
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
++.+|||+|+| ++|+|||||++... .+...+|+||+|++|+|||++.... ....|||++|+|+||+.||+|+
T Consensus 69 ~~~~WAP~i~~--~~g~~yly~t~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~---~~~~iDp~~f~DddG~~Yl~~~ 143 (538)
T 3c2u_A 69 SGGIWAPDLSY--ADGKFWLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSKPILL---NGAGFDASLFHDPSGKKYLVNM 143 (538)
T ss_dssp TCEECSCEEEE--ETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTCCCCCCEEE---ECSCSCCEEEECTTSCEEEEEE
T ss_pred CCCEECCeEEE--ECCEEEEEEEeccCCCCCcccccEEEEEECCCCCCccccEec---CCCcCCCeeEECCCCCEEEEEE
Confidence 57899999998 79999999996532 1234789999999999999974321 2358999999999999999999
Q ss_pred ecCC-------CcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCC
Q 012300 300 SEDN-------SELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMG 368 (466)
Q Consensus 300 ~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~G 368 (466)
.+++ +.|++++|++|+.++.++.+.|..+ ...|||+|+|+||+|||+||.+. ...+|.+. ++|++|+|
T Consensus 144 ~~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~gg-~~~~~~~~~~rS~s~~G 222 (538)
T 3c2u_A 144 YWDQRVYHHNFYGIALQEYSVAEEKLIGKPEIIYKGTDIAYTEGPHLYYINDMYYLMTAEGG-TTYQHSETIARSKTIHG 222 (538)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEESC-SSTTCEEEEEEESSTTC
T ss_pred ecCCccCCCCCCCEEEEEECCccCCCCCCCEEEecCCCCCccccceEEEECCEEEEEEecCC-CCCCeEEEEEEECCCCC
Confidence 6532 4699999999998888887777643 47999999999999999999642 22345554 58999999
Q ss_pred CceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCC-------------C-CCCCCee-EEEEEEEc
Q 012300 369 PWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNP-------------A-DLRESRY-IWLPLIVR 431 (466)
Q Consensus 369 Pw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~-------------~-~~~~~R~-v~lPl~~~ 431 (466)
||+.. ++||+...........+.+|+++++. +| +||++||.+-.. . .....|. .+.||.|+
T Consensus 223 P~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~w~ 300 (538)
T 3c2u_A 223 PYEIQPDYPLLSAWKEVHNPLQKCGHASLVETQNG--QWYLAHLTGRPLPAPAGFPSREREQHAFCPLGRETAIQKIEWQ 300 (538)
T ss_dssp CCEECTTCCSBCCTTCTTCSSEEEEEEEEEECTTS--CEEEEEEEECCCCCCTTCCTTCHHHHCCCTTCSEEEEEEEEEE
T ss_pred CCccCCCCceEecCCCCCCceEcCCCCeEEECCCC--CEEEEEEEccCccccccccccccccCCCCCCCcEEEEEEEEEE
Confidence 99998 58888653100011233445566655 45 788888754211 1 1334566 57899994
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=315.82 Aligned_cols=256 Identities=18% Similarity=0.248 Sum_probs=186.4
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccc-c-CCCCe
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHD-L-YKLNV 225 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~-~-~~~~~ 225 (466)
+..+||+|++. +|+||||+|. +++.+++|+||+||+.++.+|..... |... . .....
T Consensus 5 ~~~~DP~i~~~--~g~yyl~~t~------------------~~i~~~~S~DL~~W~~~g~~l~~~~~-~~~~~~~~~~~~ 63 (318)
T 1gyh_A 5 VDVHDPVMTRE--GDTWYLFSTG------------------PGITIYSSKDRVNWRYSDRAFATEPT-WAKRVSPSFDGH 63 (318)
T ss_dssp CCCSSCEEEEE--TTEEEEEESE------------------ETCEEEEESSSSEEEEEEESSSSCCT-THHHHCTTCCSE
T ss_pred eecCCCEEEEE--CCEEEEEECC------------------CCcEEEECCCCCCccCCCcccCCCcc-cccccCCCcCcc
Confidence 45789999986 5899999874 25889999999999999999886532 3210 0 01468
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCC---ceeccccC-----CCCCCccCceEEEcCCCcEE
Q 012300 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGP---FDYLYSKR-----PHGFDSRDMTIFKDDDGVAY 295 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~GP---f~~~~~~~-----p~g~~~iDp~vF~DdDG~~Y 295 (466)
+|||+|++ ++|+|||||++...+....+||||+|++ |.|| |++.+... .....+|||+||+|+||+.|
T Consensus 64 ~wAP~v~~--~~g~~ylyyt~~~~~~~~~~igva~s~~~dp~gp~~~w~~~~~v~~~~~~~~~~~~iDp~vf~D~dG~~Y 141 (318)
T 1gyh_A 64 LWAPDIYQ--HKGLFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVW 141 (318)
T ss_dssp EEEEEEEE--ETTEEEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEE
T ss_pred cccCeEEE--ECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCCcceecCCcccccCCCCCCCCcccCCeEECCCCCEE
Confidence 99999998 6999999999875433457899999998 8999 99764221 12346899999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCCCcccc---EEEe--------e-----cCceeeeeEEEEECCEEEEEEeCC---CCCCCC
Q 012300 296 LVYSSEDNSELHIGPLTSDYLDVSNV---VRRI--------L-----VGQHREAPALFKHLGTYYMVTSGC---TGWAPN 356 (466)
Q Consensus 296 L~~g~~~n~~i~i~~Ls~D~~~~~g~---~~~i--------~-----~g~~~EgP~ifK~~G~YYL~yS~~---tg~~~n 356 (466)
|+|+++. +.|.+++|++|++. +++ +..+ + .+...|||+|+|++|+|||+||.. .|+..+
T Consensus 142 l~~g~~~-~~i~~~~l~~d~~~-~g~~~~w~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~g~yYL~~s~~~~~~g~~~~ 219 (318)
T 1gyh_A 142 MSFGSFW-GGLKLFKLNDDLTR-PAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDST 219 (318)
T ss_dssp EEECBST-TCEEEEEBCTTSSS-BCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEETTEEEEEEEESCCSCGGGCC
T ss_pred EEeeccC-CCEEEEEeCCcccc-ccceeecceecccCcceeecccCCCCcceeccEEEEECCEEEEEEEeCCCcCCCCCc
Confidence 9998753 57999999999762 222 1111 1 134799999999999999999953 245566
Q ss_pred cEEE-EEeCCCCCCceeC-CCccccCCc--cce--eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeE-EEEEE
Q 012300 357 EALV-HAAESIMGPWEDM-GNPCIGGNK--VFR--LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYI-WLPLI 429 (466)
Q Consensus 357 ~~v~-~~Sds~~GPw~~~-gnPi~~~~~--~~~--~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~ 429 (466)
|.+. ++|++|+|||++. ++|++.... ++. ..-.+.+|++++..+| +||++||.+.... ..+|.+ +.||.
T Consensus 220 y~~~~~rS~s~~GP~~~~~g~p~~~~~g~~~~~~~~~~~g~GH~~~~~~~G--~~~~~yh~~~~~~--~g~~~~~~~~~~ 295 (318)
T 1gyh_A 220 YHLVVGRSKQVTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDG--KDYLVLHAYEAAD--NYLQKLKILNLH 295 (318)
T ss_dssp CEEEEEEESSTTSCCBCTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEETT--EEEEEEEEEEGGG--TTEEEEEEEECE
T ss_pred ceEEEEEcCCCCCCCCcCCCCEeecCCCcEEecCCCcEEcCCCCEEEEcCC--CEEEEEeccCCCC--CceEEEEEEEEE
Confidence 7665 5899999999998 889874311 010 1112344556666666 6899998665432 234564 79999
Q ss_pred EcC
Q 012300 430 VRG 432 (466)
Q Consensus 430 ~~~ 432 (466)
|++
T Consensus 296 w~~ 298 (318)
T 1gyh_A 296 WDG 298 (318)
T ss_dssp ECT
T ss_pred ECC
Confidence 975
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=331.10 Aligned_cols=264 Identities=18% Similarity=0.199 Sum_probs=190.3
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
.|||+. +||+|++. +++|||++|... .+++|.+++|+||+||+..+.+|............
T Consensus 6 ~NPil~g~~~DP~i~~~--~~~yY~~~s~~~--------------~~~gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~ 69 (528)
T 1yrz_A 6 QNPILPGFHPDPSIVRV--GDDYYIATSTFE--------------WFPGVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNM 69 (528)
T ss_dssp ESCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECSBCSTTTCCCTTCC
T ss_pred cCCccCCCCCCCeEEEE--CCEEEEEEccCc--------------cCCCeEEEECCCccCceECccccCCcccccccCCC
Confidence 356653 69999986 489999987531 24689999999999999999998765421111112
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeC---CCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEE-
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDD---CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV- 297 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~---~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~- 297 (466)
.++.+|||+|++ ++|+|||||+... .++...+|+||+|++|+|||++... .+...|||+||+|+||+.||+
T Consensus 70 ~~~~~wAP~i~~--~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~---~~~~~iDp~vf~D~dG~~Yl~~ 144 (528)
T 1yrz_A 70 NSGGIWAPCLSY--HDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIY---LNSSGFDPSLFHDDDGRKWLVN 144 (528)
T ss_dssp TTCEECSCEEEE--ETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEE---CCCSCSCCEEEECTTSCEEEEE
T ss_pred CCCCEECCeEEE--ECCEEEEEEecccCCCCCcccceEEEEEeCCCCCCccccEE---CCCCcCCCceEECCCCCEEEEE
Confidence 357899999998 8999999999642 2223467999999999999997432 245689999999999999999
Q ss_pred --EEecC----CCcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEeCCCC
Q 012300 298 --YSSED----NSELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIM 367 (466)
Q Consensus 298 --~g~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v-~~~Sds~~ 367 (466)
|++.. ++.|.+++|++|+.++.++.+.|..+ ...|||+|+|+||+|||+||..... .++.+ +++|++|+
T Consensus 145 ~~~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~~g~~-~~~~~~~~rs~~~~ 223 (528)
T 1yrz_A 145 MIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTE-YEHAATLARSQSID 223 (528)
T ss_dssp EEECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSS-TTCEEEEEEESSTT
T ss_pred eeccCCCCCCCCCeEEEEEECCccCCCCCCCEEEEcCCCCCccCCCEEEEECCEEEEEEeCCCCC-CCcEEEEEEECCCC
Confidence 44321 14799999999998888887777643 4799999999999999999854222 23554 45899999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCC-C-CCCCee-EEEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPA-D-LRESRY-IWLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~-~-~~~~R~-v~lPl~~~~ 432 (466)
|||++. ++||+...........+.+|+++++. +| +||++||..-... + ....|. .+.||.|++
T Consensus 224 GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G--~~~~~~~~~~~~~~~~~~~gR~~~l~~v~w~~ 291 (528)
T 1yrz_A 224 GPYETDPSYPLVTSTGQPELALQKAGHGSLVETQNG--EWYLAHLCGRPLKGKYCTLGRETAIQKVNWTE 291 (528)
T ss_dssp CCCEECTTCCSEECTTCTTCSSEEEEEEEEEECTTS--CEEEEEEEECCBTTTBCTTCSEEEEEEEEECT
T ss_pred CCCCcCCCCeEEEecCCCCCceEcCCcCeEEECCCC--CEEEEEEEecCCCCCCCCCCcEEEEEEEEECC
Confidence 999998 58888542100011234445667765 44 7888887543211 1 233466 568999954
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=329.39 Aligned_cols=262 Identities=19% Similarity=0.201 Sum_probs=191.5
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
.|||+. +||+|++. +++|||++|... .++++.|++|+||+||+.++.+|...+........
T Consensus 5 ~NPil~g~~~DP~i~~~--~~~yY~~~s~~~--------------~~~gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~ 68 (535)
T 2exh_A 5 KNPILTGFHPDPSICRV--GDDYYIAVSTFE--------------WFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNP 68 (535)
T ss_dssp ESCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECCBCSTTTCCCTTCC
T ss_pred cCCccCCCCCCCEEEEE--CCEEEEEECCCC--------------CCCCeEEEECCCCCCcEECccccCCcccccccCCC
Confidence 356654 69999986 589999987531 25789999999999999999998765432111112
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEE
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
.++.+|||+|+| ++|+|||||++... .+...+|+||+|++|+|||++... .....|||++|+|+||+.||+|
T Consensus 69 ~~~~~WAP~i~~--~~g~~ylyyt~~~~~~g~~~~~~~~va~s~~~~Gpw~~p~~---~~~~~iDp~vf~DddG~~Yl~~ 143 (535)
T 2exh_A 69 DSGGVWAPHLSY--SDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIY---LNSSGFDPSLFHDEDGRKYLVN 143 (535)
T ss_dssp TTCBBCSCEEEE--ETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEE---CCCSCSCCEEEECTTSCEEEEE
T ss_pred CCCCEECCeEEE--ECCEEEEEEEeccCCCCCccccceEEEEeCCCCCCccccEe---cCCCcCCCceEECCCCCEEEEE
Confidence 356799999998 79999999996532 123478999999999999997432 2346899999999999999999
Q ss_pred EecCC-------CcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCC-CCCCCCcEE-EEEeCCC
Q 012300 299 SSEDN-------SELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGC-TGWAPNEAL-VHAAESI 366 (466)
Q Consensus 299 g~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~-tg~~~n~~v-~~~Sds~ 366 (466)
+.+++ +.|.+++|++|+.++.++.+.|..+ ...|||+|+|+||+|||+||.. +++ ++.+ +++|++|
T Consensus 144 ~~~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~ggt~~--~~~~~~~rs~s~ 221 (535)
T 2exh_A 144 MYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRY--NHAATIARSTSL 221 (535)
T ss_dssp EEECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSST--TCEEEEEEESST
T ss_pred EecCCccCCCCCCcEEEEEECCccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCCCCCC--CeEEEEEEeCCC
Confidence 86532 4689999999998888887777643 4799999999999999999853 332 3554 4589999
Q ss_pred CCCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCC----------C-CCCCCee-EEEEEEEc
Q 012300 367 MGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNP----------A-DLRESRY-IWLPLIVR 431 (466)
Q Consensus 367 ~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~----------~-~~~~~R~-v~lPl~~~ 431 (466)
+|||+.. ++||+...........+.+|+++++. +| +||++||..-.. . .....|. .+.||.|+
T Consensus 222 ~GP~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G--~w~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~w~ 298 (535)
T 2exh_A 222 YGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTD--EWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWK 298 (535)
T ss_dssp TCCCEECTTCCSEESTTCTTCSSEEEEEEEEEECTTS--CEEEEEEEECCCCCTTSCTTTCCCCCTTCEEEEEEEEEES
T ss_pred CCCCccCCCcceEecCCCCCCceEcCCCCeEEECCCC--CEEEEEEEccCcccccccccccCCCCCCCcEEEEEEEEEE
Confidence 9999998 58888542100011234445667765 44 788888754321 1 1233576 46899993
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=329.38 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=190.7
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+. +||+|++. +++||||+|... .+++|.|++|+||+||+..+.+|...+.........
T Consensus 5 NPil~g~~~DP~ii~~--~~~yY~~~s~~~--------------~~~gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~ 68 (533)
T 1yif_A 5 NPVLKGFNPDPSICRA--GEDYYIAVSTFE--------------WFPGVQIHHSKDLVNWHLVAHPLQRVSQLDMKGNPN 68 (533)
T ss_dssp SCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSEEEEECSBCSTTTCCCTTCCT
T ss_pred CCccCCCCCCCeEEEE--CCEEEEEEecCC--------------CCCCeEEEEeCCCCCCeECCccccCcccccccCCCC
Confidence 56654 68999986 589999987531 246899999999999999999987654321111123
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
++.+|||+|+| ++|+|||||+.... .+...+|+||+|++|+|||++.... ....|||++|+|+||+.||+|+
T Consensus 69 ~~~~WAP~i~~--~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~---~~~~iDp~~f~D~dG~~Yl~~~ 143 (533)
T 1yif_A 69 SGGVWAPCLSY--SDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKL---NSSGFDASLFHDTDGKKYLLNM 143 (533)
T ss_dssp TCBBCSCEEEE--ETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEEC---CCSCSCCEEEECTTSCEEEEEE
T ss_pred CCCEECceEEE--ECCEEEEEEEeccCCCCCcccccEEEEEeCCCCCCccccEEc---CCCcCCCceEECCCCCEEEEEE
Confidence 56799999998 79999999996432 1234689999999999999974321 2358999999999999999998
Q ss_pred ecCC-------CcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEeCCCCC
Q 012300 300 SEDN-------SELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMG 368 (466)
Q Consensus 300 ~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v-~~~Sds~~G 368 (466)
.+++ +.|.+++|++|+.++.++.+.|..+ ...|||+|+|+||+|||+||.+. ...++.+ +++|++|+|
T Consensus 144 ~~~~~~g~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~gg-~~~~~~v~~~rs~s~~G 222 (533)
T 1yif_A 144 LWDHRIDRHSFGGIVIQEYSDKEQKLIGKPKVIFEGTDRKLTEAPHLYHIGNYYYLLTAEGG-TRYEHAATIARSANIEG 222 (533)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEESC-SSTTCEEEEEEESSTTC
T ss_pred ecccccCCCCCCCEEEEEECCccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCCC-CCCCeEEEEEEECCCCc
Confidence 6532 4689999999998888887777643 47999999999999999999532 1223554 458999999
Q ss_pred CceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCC-----------CCCCCCee-EEEEEEEc
Q 012300 369 PWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNP-----------ADLRESRY-IWLPLIVR 431 (466)
Q Consensus 369 Pw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~-----------~~~~~~R~-v~lPl~~~ 431 (466)
||+.. ++||+.....-.....+.+|+++++. +| +||++||.+-.. ......|. .+.||.|+
T Consensus 223 P~~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G--~w~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~v~w~ 297 (533)
T 1yif_A 223 PYEVHPDNPILTSWHDPGNPLQKCGHASIVQTHTD--EWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLYWK 297 (533)
T ss_dssp CCEECTTCCSEECTTCTTSSSEEEEEEEEEECTTS--CEEEEEEEECCBCCSCCCTTTSCCBCTTCSEEEEEEEEEE
T ss_pred eeeeCCCCceEecCCCCCCceEcCCCCeEEECCCC--CEEEEEEEcccccccccccccccCCCCCCcEEEEEEEEEE
Confidence 99998 68988642100011233445666665 44 688888754311 11334576 47899994
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=323.24 Aligned_cols=257 Identities=18% Similarity=0.222 Sum_probs=182.3
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccc---------ccc
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNET---------HDL 220 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~---------~~~ 220 (466)
.|||+|++. +|+||||+|. +.+++|+||+||+.++.+|......+. ..+
T Consensus 36 ~~DPsii~~--~g~YYl~~T~--------------------~~i~~S~DLvnW~~~g~~l~~~~~~~~~~~~~l~~~~~w 93 (470)
T 2x8s_A 36 VHDPSIIET--NGTFYVFGSH--------------------LASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEW 93 (470)
T ss_dssp CSSCEEEEE--TTEEEEECST--------------------TCEEEESSSSBCEEEECSCSTTCTTSTTHHHHTHHHHHH
T ss_pred CCCCEEEEE--CCEEEEEECc--------------------CceEECCCcccceeccccccccccccccccccccccccc
Confidence 489999986 5899999763 247899999999999988865322100 011
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC----------------CCCCccCc
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP----------------HGFDSRDM 284 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p----------------~g~~~iDp 284 (466)
...+.+|||+|++. ++|||||||++...+...++||||+|++|+|||++.+.... ....+|||
T Consensus 94 ~~~~~~WAP~vi~~-~dGkyylyys~~~~~~~~~~IgvatSddp~GPw~~~g~~l~~~~~~~~~dg~~~~~~~~~~~IDp 172 (470)
T 2x8s_A 94 AQSDTLWAADVTQL-ADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVAP 172 (470)
T ss_dssp HTCSSCCCCEEEEC-TTSCEEEEEEEECSSSCCEEEEEEEESSTTCCCEEEEEEEEECCSSBCTTSSBCCTTTSCCSCCC
T ss_pred cCCCceECCeEEEe-cCCEEEEEEEeccCCCCccEEEEEEeCCCCCCceeCCeeeccCcccccccccccccccCCCCCCC
Confidence 12357999999973 68999999998754334678999999999999998642110 12468999
Q ss_pred eEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCccc---cEEEeecC--ceeeeeEEE--EECCEEEEEEeC-CCCCCCC
Q 012300 285 TIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSN---VVRRILVG--QHREAPALF--KHLGTYYMVTSG-CTGWAPN 356 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g---~~~~i~~g--~~~EgP~if--K~~G~YYL~yS~-~tg~~~n 356 (466)
+||+|+||+.||+|+++. +.|++++|++|+..... ....+..+ ...|||+|+ |++|+|||+||. ++++.++
T Consensus 173 ~vf~DdDG~~Yl~~g~~~-~gI~~~eL~~d~~~~~~~~~~~~~i~~g~~~~~EGP~i~~~K~~G~YYL~~S~g~~~~~~~ 251 (470)
T 2x8s_A 173 HTFFDKDGKLWMVYGSYS-GGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGG 251 (470)
T ss_dssp EEEECTTSCEEEEECBST-TCEEEEEBCTTTSSBCTTCTTCEEEECCSSCSEEEEEEEEETTTTEEEEEEEESBSSTTSB
T ss_pred CEEEcCCCCEEEEeeecC-CcEEEEEECCccCcCcCCcccceEecCCCCCceeccEEEEEccCCEEEEEEEeCCCCCCCC
Confidence 999999999999999764 57999999998755432 12344433 479999999 569999999995 3444556
Q ss_pred cEEE-EEeCCCCCCceeC-CCccccCCc-----------------c-----ce------eeccCCCceEEEcccCCcccE
Q 012300 357 EALV-HAAESIMGPWEDM-GNPCIGGNK-----------------V-----FR------LTTFFAQSTYVIPLAGLPGLY 406 (466)
Q Consensus 357 ~~v~-~~Sds~~GPw~~~-gnPi~~~~~-----------------~-----~~------~~t~~sq~~~v~~~~G~~~~y 406 (466)
|.+. ++|++|+|||+.. ++|++.... + |. ..-.+.+|.+++..+...+||
T Consensus 252 y~v~~arS~s~~GP~~~~~g~pl~~~~~~~~~~~~~~~~~~~G~~l~g~~~f~~~~~~~~~~~g~GH~s~~~~~~~G~w~ 331 (470)
T 2x8s_A 252 YNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNSAYYDEKTGRSY 331 (470)
T ss_dssp CEEEEEEESSTTCCCBCTTCCBGGGCCCCTTCSSCHHHHTTSSEEEECSEECCBTTBCCCEEEEEEEEEEEECTTTCCEE
T ss_pred ceEEEEEECCCCCCCCcCCCCcccccCCcccccccccccccccceecccccccccccccCceEcCCCCeEEEeCCCCeEE
Confidence 7665 5899999999965 899875310 0 00 011233455666543212799
Q ss_pred EEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 407 IFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 407 i~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|+||++... .+..|. ...+|.|++
T Consensus 332 ~vyH~~~~~--~g~~r~~~v~~l~w~~ 356 (470)
T 2x8s_A 332 LIFHTRFPG--RGEEHEVRVHQLFMNK 356 (470)
T ss_dssp EEEEEECTT--STTCCEEEEEEEEECT
T ss_pred EEEeeccCC--CCCcceEEEEEEEECC
Confidence 999987533 234565 568899975
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=306.67 Aligned_cols=275 Identities=15% Similarity=0.099 Sum_probs=187.9
Q ss_pred CCeEEe--eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceec--cCCCccccccc
Q 012300 145 GAPIQA--HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVL--AAEETNETHDL 220 (466)
Q Consensus 145 GnpI~a--hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL--~~~~~~~~~~~ 220 (466)
-|||++ -||+|++. +++||+|+|... ..+++.|++|+||++|+..+.+. ......
T Consensus 10 ~NPii~~~aDP~ii~~--~d~yY~~~st~~--------------~~~g~~i~~S~DL~~w~~~~~~~~~~~~~~~----- 68 (330)
T 3k1u_A 10 LNPIIIQRADPMIYKH--NDGYYYFTASVP--------------EYDRIEVRKAKTIEGLRNAEPVDVWRRHESG----- 68 (330)
T ss_dssp CSCSBTTCEEEEEEEC--TTSCEEEEEECT--------------TCCEEEEEEESSTGGGTTSCCEEEEECCSSS-----
T ss_pred ECCCCCCCCCCEEEEE--CCEEEEEEeccC--------------CCCCEEEEEcCCcCCccCCcceeecccCCCC-----
Confidence 366665 38899985 478999988643 24689999999999999766432 222221
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeCCCC----CcceEEEEEeCCCCCCcee----cccc-CCCCCCccCceEEEcCC
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCNY----TKAAVGVAISDYPTGPFDY----LYSK-RPHGFDSRDMTIFKDDD 291 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~~~~----~~~~IGVA~SdsP~GPf~~----~~~~-~p~g~~~iDp~vF~DdD 291 (466)
...+.+|||+|++ ++|||||||++..... ....+.++++++|+|||+. .+.. ...+..+|||+||+|+|
T Consensus 69 ~~~~~~WAP~v~~--~~G~yylyys~~~~~~~~~~~~~~~~~~~~~~~~gP~~~~~~~~~~~~~~~~~~~IDp~vf~Ddd 146 (330)
T 3k1u_A 69 EMSNLIWAPEIHF--INGAWYIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKTAWESFSLDATIFEHNE 146 (330)
T ss_dssp TTSEEEEEEEEEE--ETTEEEEEEEEESSSCCBTTBCCCEEEEEEECSSSTTSSCCEEEEECCCSSCSCEEEEEEEEETT
T ss_pred ccCCCeECCEEEE--ECCeEEEEEEeccCCCCCCcccceeeeEEEeCCCCCccccccccccccCCCCCCccCceEEEECC
Confidence 2356799999998 7999999999865321 1234556777777777653 2221 12345689999999877
Q ss_pred CcEEEEEEecC----CCcEEEEEcCCCCCCccccEEEeec---------CceeeeeEEEEECCEEEEEEeCCCCCCCCcE
Q 012300 292 GVAYLVYSSED----NSELHIGPLTSDYLDVSNVVRRILV---------GQHREAPALFKHLGTYYMVTSGCTGWAPNEA 358 (466)
Q Consensus 292 G~~YL~~g~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~---------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~ 358 (466)
|++||+++... ++.|+++||++++ ++.++.+.+.. ..+.|||+|+|+||+|||+||++... .+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~i~i~~l~~~~-~~~g~~~~i~~~~~~~e~~~~~~~EGp~i~k~~G~YYL~ys~~~~~-~~y~ 224 (330)
T 3k1u_A 147 KLYYVWAQQDINIKGHSNIYIAEMENPW-TLKTKPVMLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSASATD-VNYC 224 (330)
T ss_dssp EEEEEEEECCTTSSSSBEEEEEEEEETT-EECSCCEEEECSCSGGGCSSSCBEEEEEEEEETTEEEEEEEESCSS-TTCE
T ss_pred ccEEEEeecCCCcCCCceEEEEECCCCc-cccCCcEEecCCCccccccCCceeeCCEEEEECCEEEEEEEeCCCC-CCce
Confidence 77666655432 3579999998775 45666665542 24679999999999999999965433 4566
Q ss_pred EE-EEeCCCCCCc-----eeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC-----CCCeeE-EE
Q 012300 359 LV-HAAESIMGPW-----EDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL-----RESRYI-WL 426 (466)
Q Consensus 359 v~-~~Sds~~GPw-----~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~-----~~~R~v-~l 426 (466)
+. ++|+++.||| ++.++|++..+.. ....+.+|++|+..+..+.|||+||.+-..... ...|.+ +.
T Consensus 225 ~~~~~s~~~~gP~~~~~~~~~~~pi~~~~~~--~~~~g~GH~s~v~~~dG~~~~~~yH~~~~~~~~~~~~~~~~R~~~l~ 302 (330)
T 3k1u_A 225 IGMLTAEENSNLLDKNSWTKSQTPVFKTSME--NHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPNRHTRAQ 302 (330)
T ss_dssp EEEEEEETTSCTTSGGGCEECSSCSBCCBTT--TTBEEEEEEEEEECTTSCSEEEEEEEESCSCCCSCGGGCCCCEEEEE
T ss_pred EEEEEECCCCCCCCCccccccCCCEEEcCCC--CceeeCCcCeEEECCCCCEEEEEEccccCCcccCCCCCCCCeEEEEE
Confidence 65 4899999995 5567787765321 123344566777654334689999977654322 346775 57
Q ss_pred EEEEcCCCCCCCccccCCCcccee
Q 012300 427 PLIVRGPADRPLEYNFGFPLWSRV 450 (466)
Q Consensus 427 Pl~~~~~~~~~~~~~~~~~~~~~~ 450 (466)
||.|++ |+ .|.||.|.-..+
T Consensus 303 ~v~w~~--DG--wPv~g~p~~~~~ 322 (330)
T 3k1u_A 303 IINWRE--DG--TPDFGVPEVDSL 322 (330)
T ss_dssp ECEECT--TS--CEECCCCCCCCC
T ss_pred EEEECC--CC--CEEcCCCCCCCc
Confidence 999986 67 788888864433
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=317.81 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=193.2
Q ss_pred CeEE--eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCC
Q 012300 146 APIQ--AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKL 223 (466)
Q Consensus 146 npI~--ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~ 223 (466)
|||+ .+||+|++. .+|+|||++|... ..+|.|++|+||++|+..+.++...... .....
T Consensus 13 NPi~~~~~DP~iir~-~dg~YY~~~T~~~---------------~~~i~i~~S~DLv~W~~~~~~~~w~~~~---~~~~~ 73 (468)
T 3akh_A 13 NPLAEKRADPHIFKH-TDGYYYFTATVPE---------------YDRIVLRRATTLQGLATAPETTIWTKHA---SGVMG 73 (468)
T ss_dssp ECSBTTCEEEEEEEC-TTSCEEEEEECTT---------------CCEEEEEEESSTGGGGGCCCEEEEECCS---SSTTC
T ss_pred CCCCCCCCCCEEEEe-cCCEEEEEEEeCC---------------CCCEEEEECCCccccccCCCcceecCCC---CCCCC
Confidence 5554 379999984 3689999999631 2579999999999999988644311100 01134
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCCC-CCcceEEEEE--eCCC-CCCceecccc-CCCCCCccCceEEEcCCCcEEEEE
Q 012300 224 NVLERPKVIYNDRTGKYVMWMHIDDCN-YTKAAVGVAI--SDYP-TGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 224 ~~iWAP~viyn~~~GkYyly~s~~~~~-~~~~~IGVA~--SdsP-~GPf~~~~~~-~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
+.+|||+|+| .+|+|||||++...+ ....+|+||+ |++| +|||++.+.. .+.+..+|||++|+ +||+.||+|
T Consensus 74 ~~~WAP~v~~--~~Gkyylyys~~~~~~~~~~~i~va~~~s~dp~~Gpw~~~g~~~~~~~~~~IDp~vf~-ddG~~Yl~~ 150 (468)
T 3akh_A 74 AHIWAPEIHF--IDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFV-VNGVRHLAW 150 (468)
T ss_dssp EEEEEEEEEE--ETTEEEEEEEEECSSCTTCCEEEEEEECCSCTTTSCCEEEEECCCSSCSCEEEEEEEE-ETTEEEEEE
T ss_pred CCEecceEEE--ECCEEEEEEEeECCCCCCceeEEEEEccCCCCCCCCCcccceeecCCCCCcCcCeEEE-ECCEEEEEE
Confidence 6799999998 689999999987532 2256899987 8999 7999987643 23356799999999 799999999
Q ss_pred EecC-----CCcEEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-Ee
Q 012300 299 SSED-----NSELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AA 363 (466)
Q Consensus 299 g~~~-----n~~i~i~~Ls~D~~~~~g~~~~i~~g---------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~S 363 (466)
+++. +..|++++|++ ++++.|+.+.|..+ ...|||+|+|++|+|||+||.+. +..+|.+.+ +|
T Consensus 151 g~~~~~~~~~~~i~i~~l~~-~~~~~g~~~~i~~~~~~we~~g~~~~EGP~i~k~~G~YYL~ys~~g-~~~~y~v~~a~s 228 (468)
T 3akh_A 151 AQRNPAEDNNTSLFIAKMAN-PWTISGTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSASA-TDANYCLGMLSA 228 (468)
T ss_dssp EECCTTSSSSBEEEEEEEEE-TTEEEEEEEEEECCCSGGGCSSSCBEEEEEEEEETTEEEEEEEESC-SSTTCEEEEEEE
T ss_pred EccCCCCCCCCcEEEEEeCC-CceecCccEEecCCCcccccCCCccccCCEEEEECCEEEEEEEeCC-CCCCceEEEEEE
Confidence 9864 35899999975 45667776666432 36999999999999999999753 456777754 78
Q ss_pred C---CCCCC--ceeCCCccccCCccceeeccCCCceEEEc-ccCCcccEEEEEeEeCCCCCC-----CCeeE-EEEEEEc
Q 012300 364 E---SIMGP--WEDMGNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMADRWNPADLR-----ESRYI-WLPLIVR 431 (466)
Q Consensus 364 d---s~~GP--w~~~gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~d~w~~~~~~-----~~R~v-~lPl~~~ 431 (466)
+ +|+|| |++.++||+..+.. ...++.+|++|++ .+| ++||++||.+......+ ..|.+ ..||.|+
T Consensus 229 ~~~~~~~gP~~w~~~~~pvl~~~~~--~~~~g~GH~svv~~~~G-~~~~~vyH~~~~~~~~G~~~~~~~R~~~l~~v~w~ 305 (468)
T 3akh_A 229 SASADLLNAASWTKSSQPVFKTSEA--TGQYGPGHNSFTVSEDG-KSDILVYHDRNYKDISGDPLNDPNRRTRLQKVYWN 305 (468)
T ss_dssp ETTSCTTSGGGCEECSSCSBCCBTT--TTBEEEEEEEEEECTTS-CSEEEEEEEESSSSCCSSGGGCCCCEEEEEECEEC
T ss_pred CCCCCCCCcHHhccCCceEEEeCCC--CceEeCCCceEEECCCC-CEEEEEEecccCCCCCCCcccCCCcEEEEEEEEEC
Confidence 7 89998 99988999875421 1223444556664 455 34899999766542212 35764 5799997
Q ss_pred CCCCCCCccccCCC
Q 012300 432 GPADRPLEYNFGFP 445 (466)
Q Consensus 432 ~~~~~~~~~~~~~~ 445 (466)
+ |+ .+.|+.|
T Consensus 306 ~--dG--wp~~~~~ 315 (468)
T 3akh_A 306 A--DG--TPNFGIP 315 (468)
T ss_dssp T--TS--CEECCCC
T ss_pred C--CC--CEEeccc
Confidence 5 55 4444444
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=197.35 Aligned_cols=199 Identities=20% Similarity=0.226 Sum_probs=136.4
Q ss_pred CeEEeeCC-ceEEECCCCEEEEEEEeCCCCCcccccccc----c--eeccCcEEEEEeCCCCCCEEeceeccCCCccccc
Q 012300 146 APIQAHGG-GILYDERSRTYFWYGEYKDGPTYHAHKKAA----A--RVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH 218 (466)
Q Consensus 146 npI~ahd~-~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~----~--~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~ 218 (466)
+++...|| .|++. +|+||||.|...+.. .++... . -.....|.+++|+||++|+.++.+|...+..
T Consensus 46 e~~~~~DP~~v~~~--dG~Yymfyt~~~~~~--~G~~~~~~~~~~~~w~~~~i~~a~S~DLv~W~~~g~~l~~~~~~--- 118 (374)
T 3r4z_A 46 EGVIRRDPSAVLKV--DDEYHVWYTKGEGET--VGFGSDNPEDKVFPWDKTEVWHATSKDKITWKEIGPAIQRGAAG--- 118 (374)
T ss_dssp TTEEEECCCCBEEE--TTEEEEEEEEEESCC--CCSSCSCTTSCSSTTTTCEEEEEEESSSSEEEEEEEEECCCCTT---
T ss_pred CCcCcCCCCeEEEE--CCEEEEEEEcCCCcc--cccccccccccccccCccEEEEEECCCCcCcEeCcccCCCCCCC---
Confidence 55666777 57765 599999988643210 000000 0 0023458889999999999999998865321
Q ss_pred ccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEE
Q 012300 219 DLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAY 295 (466)
Q Consensus 219 ~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~Y 295 (466)
.++...+|||+|++ .+|+|||||++.... ....+|++|+|++|.|||++.+. |.-....|...|.|+||++|
T Consensus 119 -~~d~~gvwaPsvi~--~dGkyyL~Yt~~~~~~~~~~~~~igvA~Sdd~~Gpw~~~~~--Pvi~~~~~~~w~~ddd~~~~ 193 (374)
T 3r4z_A 119 -AYDDRAVFTPEVLR--HNGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKSDA--PILSPENDGVWDTDEDNRFL 193 (374)
T ss_dssp -STTSSEEEEEEEEE--ETTEEEEEEEEECSSCCTTCCBEEEEEEESSTTCCCEECSS--CSBCCCCCSEECSSSSCTTC
T ss_pred -CccCCCEECCEEEE--ECCEEEEEEEeccCCCCCCCcceEEEEEECCCCCCeEECCC--CEeCCCcCCceeecCCceEE
Confidence 12467899999997 799999999976432 23579999999999999998632 22122456677878888744
Q ss_pred EEEEecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCC-----CC-CCcEEE-EEeCCCCC
Q 012300 296 LVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTG-----WA-PNEALV-HAAESIMG 368 (466)
Q Consensus 296 L~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg-----~~-~n~~v~-~~Sds~~G 368 (466)
+. +..++. ...+|+|.|+|++|+|||+|++... +. .++.++ ++|++|+|
T Consensus 194 ~~-------------~~~~~d-----------~~~~~~P~v~~~~g~yyl~Y~~~~~~~~~~~~~~~~~igvA~sds~~G 249 (374)
T 3r4z_A 194 VK-------------EKGSFD-----------SHKVHDPCLMFFNNRFYLYYKGETMGESMNMGGREIKHGVAIADSPLG 249 (374)
T ss_dssp EE-------------ECCSTT-----------SSEEEEEEEEEETTEEEEEEEEECTTCCEETTEECEEEEEEEESSTTC
T ss_pred Ee-------------cCCccc-----------cCccccceEEEECCEEEEEEEecCCCCccccCCCcceEEEEEECCCCC
Confidence 21 222221 2368999999999999999986431 11 134454 58999999
Q ss_pred CceeC-CCccccC
Q 012300 369 PWEDM-GNPCIGG 380 (466)
Q Consensus 369 Pw~~~-gnPi~~~ 380 (466)
||++. ++||+..
T Consensus 250 pw~~~~~~Pi~~~ 262 (374)
T 3r4z_A 250 PYTKSEYNPITNS 262 (374)
T ss_dssp CCEECTTCCCCSS
T ss_pred CCEECCCCCEeCC
Confidence 99997 6888764
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=191.86 Aligned_cols=196 Identities=24% Similarity=0.317 Sum_probs=132.0
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCC--Ccccc-cccc-ceeccCcEEEEEeCCCCCCEEeceeccCCC-cccccccCCCC
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGP--TYHAH-KKAA-ARVDIIGVGCYSSKDMWTWKNEGIVLAAEE-TNETHDLYKLN 224 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~--~~~~~-~~g~-~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~-~~~~~~~~~~~ 224 (466)
+++.+|++. +|+||||.+..++. ++... ..+. .......|.+++|+||++|+.++.||...+ ..| +..
T Consensus 91 ~DP~~v~~~--dG~yymfY~~~~~~~~G~~~~~~~~~~~~~~~~~i~~a~S~Dlv~W~~~g~~L~~~~~~~w-----d~~ 163 (404)
T 4ak5_A 91 RDPSAMLKI--GDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIAVKRGEKGAY-----DDR 163 (404)
T ss_dssp ECCCCBEEE--TTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESSSSEEEEEEEEECCCSTTST-----TSS
T ss_pred cCCcEEEEE--CCEEEEEEEeCCCcccccccccccccccccCccEEEEEECCCCCCceeCceEeecCCCCcc-----ccC
Confidence 334446654 59999988764320 01000 0000 001234688999999999999999998653 222 467
Q ss_pred eeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEec
Q 012300 225 VLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 225 ~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
.+|||+|++ .+|+|||||++.... ....+||||+|++|.|||+..+. |.-....|...|.|+||..|+.-.
T Consensus 164 gv~aP~Vi~--~~Gkyym~Yt~~~~~~~~~~~~~IgvA~Sdsp~Gpwt~~~~--Pvl~~~~~~~W~~ddd~~~~~~~~-- 237 (404)
T 4ak5_A 164 SVFTPEVME--WKGKYYLCYQAVKSPYTVRVKNTIGMACADSPEGLWTKTDK--PVLEPSDTGEWEGDEDNRFKVVSK-- 237 (404)
T ss_dssp EEEEEEEEE--ETTEEEEEEEEECSCCCTTCCCEEEEEEESSTTCCCEECSS--CSBCCCSCCEECSSSSCTTCEEEC--
T ss_pred CEEeeEEEE--ECCEEEEEEEeccCCCCCCCcceEEEEEEeCCCCCceECCC--ceecCCCCcceeeccCceeeeccC--
Confidence 899999997 799999999986432 23578999999999999998542 221223355677777877664211
Q ss_pred CCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC-C----CC-CCcEEE-EEeCCCCCCceeC-
Q 012300 302 DNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT-G----WA-PNEALV-HAAESIMGPWEDM- 373 (466)
Q Consensus 302 ~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t-g----~~-~n~~v~-~~Sds~~GPw~~~- 373 (466)
..+ ....+|+|.|++++|+|||+|++.. + +. .++.++ ++|++++|||++.
T Consensus 238 -----------~~w-----------D~~~~~~P~v~~~~g~yyl~Ysg~~~~~~~~~~~~~~~igvA~Sdd~~Gpw~k~~ 295 (404)
T 4ak5_A 238 -----------GDF-----------DSHKVHDPCIIPYNGKFYMYYKGERMGEEITWGGREIKHGVAIAENPMGPYVKSE 295 (404)
T ss_dssp -----------CST-----------TSSEEEEEEEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCEECT
T ss_pred -----------Ccc-----------cCCcEECCEEEEECCEEEEEEECCCCCCccccCCCcceEEEEEECCCCCCcEECC
Confidence 111 1236899999999999999998643 1 21 134555 5899999999997
Q ss_pred CCccccC
Q 012300 374 GNPCIGG 380 (466)
Q Consensus 374 gnPi~~~ 380 (466)
++||+..
T Consensus 296 ~nPv~~~ 302 (404)
T 4ak5_A 296 YNPISNS 302 (404)
T ss_dssp TCCSCSS
T ss_pred CCceecC
Confidence 6898863
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=189.02 Aligned_cols=199 Identities=18% Similarity=0.263 Sum_probs=132.5
Q ss_pred EEeeCCc-eEEECCCCEEEEEEEeCCCC--Ccccccc---ccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 148 IQAHGGG-ILYDERSRTYFWYGEYKDGP--TYHAHKK---AAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 148 I~ahd~~-Ii~~~~~g~YYlygT~~~~~--~~~~~~~---g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
|..+||. |++. +|+||||.|..++. ++ ..|. ...-.....|.+++|+||++|+.+|.+|...+.. .+
T Consensus 93 v~~~DP~~vi~~--dG~Yylfyt~~~~~~~G~-~~~~~~~~~~p~~~~~i~~A~S~Dlv~W~~~g~~l~~~~~~----~w 165 (408)
T 3p2n_A 93 VVRRDPSAIIKE--NGKYYVWYSKSTGPTQGF-GGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGPAVTRGEKG----AY 165 (408)
T ss_dssp EEEECCCCBEEE--TTEEEEEEEEEESCCCCS-SSCTTTSCCSTTTTCEEEEEEESSSSEEEEEEEEECCCSTT----ST
T ss_pred cEeCCCCEEEEE--CCEEEEEEEeCCCccccc-ccccccccccccccceEEEEEcCCCCeeeEeCceeCCCCCC----Cc
Confidence 5555666 7764 69999999964311 11 0000 0000123468899999999999999998865421 12
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEE
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
+...+|||+|++ .+|+|||||++.... .....+++|+|++|.|||+..+. |.-....|+.+|.|+|++.|++-
T Consensus 166 d~~gv~aPsVi~--~dGkYyL~Yt~~~~~~~~~~~~~i~va~A~S~DG~W~~~~~--pli~~~~~~~~~~e~d~~~~~~~ 241 (408)
T 3p2n_A 166 DDRSVFTVEIMK--WEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPWTKSEE--PILSPADNGVWKGEEQDRFAVIK 241 (408)
T ss_dssp TSSEEEEEEEEE--ETTEEEEEEEEECSSCCTTCCCEEEEEEESSTTCCCEECSS--CSBCCCSCCEECSSSCCTTCEEE
T ss_pred ccCceEeeEEEE--ECCEEEEEEEeecCCCCCcCCCceEEEEEECCCCCEEECCc--ceeCCCCCceEEEecCCcccccc
Confidence 467899999997 799999999875321 12468999999999999998632 21111235566666676654321
Q ss_pred EecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCC------CCCCcEEE-EEeCCCCCCce
Q 012300 299 SSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTG------WAPNEALV-HAAESIMGPWE 371 (466)
Q Consensus 299 g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg------~~~n~~v~-~~Sds~~GPw~ 371 (466)
. .. + ....+|+|.|++++|+|||+|++... ....+.++ ++|+++.|||+
T Consensus 242 ~-------------~~---w--------d~~~v~~P~v~~~~G~yyl~Ys~~~~g~~~~~~~~~~~igvA~Sdd~~Gpw~ 297 (408)
T 3p2n_A 242 K-------------GD---F--------DSHKVHDPCIIPYKGKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPYV 297 (408)
T ss_dssp C-------------CS---T--------TSSEEEEEEEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCE
T ss_pred c-------------ce---e--------cCCCeEcceEEEECCEEEEEEEcccCccccccCCCccEEEEEEECCCCCCcE
Confidence 1 01 1 12347999999999999999986431 12235554 58999999999
Q ss_pred eC-CCccccCC
Q 012300 372 DM-GNPCIGGN 381 (466)
Q Consensus 372 ~~-gnPi~~~~ 381 (466)
+. ++||+...
T Consensus 298 k~~~nPVl~~~ 308 (408)
T 3p2n_A 298 KSPYNPISNSG 308 (408)
T ss_dssp ECTTCCSCSSC
T ss_pred ECCCCCcccCC
Confidence 97 68988643
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=173.59 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=128.3
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
++.++++. +|+||||.++..... .| +...+.+++|+||+||+..+.||.+.+. ...+|+|+
T Consensus 17 DPng~~~~--~G~yhlfyq~~p~~~---~~------g~~~wgha~S~Dlv~W~~~~~aL~p~~~--------~~g~~sgs 77 (432)
T 1w2t_A 17 DPNGLIFW--KGKYHMFYQYNPRKP---EW------GNICWGHAVSDDLVHWRHLPVALYPDDE--------THGVFSGS 77 (432)
T ss_dssp EEEEEEEE--TTEEEEEEEEETTSS---SC------CSCEEEEEEESSSSSCEEEEEEECCSST--------TEEEEEEE
T ss_pred CCCcCeEE--CCEEEEEEecCCCCC---CC------CCcEEEEEEcCCCcCeEECCccCCCCCC--------CCCEEeeE
Confidence 34446765 599999988654211 11 2456889999999999999999875431 35689999
Q ss_pred EEEEccCCEEEEEEEEeCC----CCCcceEEEEEeCCCCCCceec--cccC---CCC--CCccCceEEEcCCCcEEEEEE
Q 012300 231 VIYNDRTGKYVMWMHIDDC----NYTKAAVGVAISDYPTGPFDYL--YSKR---PHG--FDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~----~~~~~~IGVA~SdsP~GPf~~~--~~~~---p~g--~~~iDp~vF~DdDG~~YL~~g 299 (466)
++. .+|+|+|||++... ....+.+++|+|++ .++|++. .... |.+ ...|||.||.+ ||++||+++
T Consensus 78 av~--~~g~~~l~YTg~~~~~~~~~~~~~q~lA~S~D-~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~-dg~~~m~~g 153 (432)
T 1w2t_A 78 AVE--KDGKMFLVYTYYRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNRS-NGEWRMVLG 153 (432)
T ss_dssp EEE--ETTEEEEEEEEEECCCSSCCCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEEC-SSSEEEEEE
T ss_pred EEE--ECCEEEEEEecCccCCCCCCceEEEEEEEeCC-CCeEEecCCCceEeCCCccccccccCCEEEEE-CCEEEEEEE
Confidence 997 79999999997643 12357899999999 6899973 2221 222 35799999986 899999998
Q ss_pred ecC---CCcEEEEEcCCCCCCcc--ccEEEeecCceeeeeEEEEECCEEEEEEeCCC
Q 012300 300 SED---NSELHIGPLTSDYLDVS--NVVRRILVGQHREAPALFKHLGTYYMVTSGCT 351 (466)
Q Consensus 300 ~~~---n~~i~i~~Ls~D~~~~~--g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t 351 (466)
+.. .+.+.+++ ++|+.+++ +.......+...|+|.+|+.+|+|||++|...
T Consensus 154 ~~~~~~~g~i~ly~-S~Dl~~W~~~g~~~~~~~g~~~EcP~lf~~~g~~vL~~s~~g 209 (432)
T 1w2t_A 154 SGKDEKIGRVLLYT-SDDLFHWKYEGAIFEDETTKEIDCPDLVRIGEKDILIYSITS 209 (432)
T ss_dssp EEETTTEEEEEEEE-ESSSSSCEEEEEEEEETTCSCCEEEEEEEETTEEEEEEEETT
T ss_pred EecCCCCcEEEEEE-CCCCCCceEccccccCCCCCEEECCeEEEECCEEEEEEeCCC
Confidence 742 23566776 88998864 33222111457899999999999999999643
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=171.83 Aligned_cols=210 Identities=17% Similarity=0.260 Sum_probs=133.7
Q ss_pred cCcEEEEEeCC---------CCCCEEeceeccCCCcc--cccccCCCCeeeeceEEEE-ccCCEEEEEEEEeCC--C--C
Q 012300 188 IIGVGCYSSKD---------MWTWKNEGIVLAAEETN--ETHDLYKLNVLERPKVIYN-DRTGKYVMWMHIDDC--N--Y 251 (466)
Q Consensus 188 ~~gi~v~sS~D---------Lv~W~~~g~vL~~~~~~--~~~~~~~~~~iWAP~viyn-~~~GkYyly~s~~~~--~--~ 251 (466)
...|.++.|+| |++|+..|.||...... |..+..+...+|+++++.+ ..+|+|+|||++... + .
T Consensus 113 ~a~I~~~yskdg~~~~~~~~l~~W~~~G~vf~~g~~~~~~~~~~~d~~~~WSGSAi~~~~~dG~i~LFYTg~~~~~~~~g 192 (493)
T 1w18_A 113 HARIGFFYRRAGIPASRRPVNGGWTYGGHLFPDGASAQVYAGQTYTNQAEWSGSSRLMQIHGNTVSVFYTDVAFNRDANA 192 (493)
T ss_dssp GCEEEEEEEESSCCGGGSCTTCCCEEEEESSCTTGGGGGSTTSCCSEEEEEEEEEEESSTTSCEEEEEEEEEEEEECTTS
T ss_pred cceeeeEEecCccccccccccCCceECCccccCCCccccccccccCcCCeEcCceEEeccCCCEEEEEEEeccccccccc
Confidence 34677899998 89999999999764431 2111113467999999972 268999999997532 1 0
Q ss_pred -----CcceEEEEE----eCCCCC----Cceeccc-cCC-----------CCCCccCceEEEcC--CCcEEEEEEecC--
Q 012300 252 -----TKAAVGVAI----SDYPTG----PFDYLYS-KRP-----------HGFDSRDMTIFKDD--DGVAYLVYSSED-- 302 (466)
Q Consensus 252 -----~~~~IGVA~----SdsP~G----Pf~~~~~-~~p-----------~g~~~iDp~vF~Dd--DG~~YL~~g~~~-- 302 (466)
..++|..|. +++ .| .|++... +.+ .....|||.||+|+ ||+.||+|++..
T Consensus 193 ~~~~~~~Q~Ia~a~~~l~a~~-dgv~~~~w~k~~~l~~~DG~~Yqt~~q~~~~~fRDP~vf~D~~~dG~~YmvFeant~~ 271 (493)
T 1w18_A 193 NNITPPQAIITQTLGRIHADF-NHVWFTGFTAHTPLLQPDGVLYQNGAQNEFFNFRDPFTFEDPKHPGVNYMVFEGNTAG 271 (493)
T ss_dssp CEEEEEEEEEEEEEEEEEECS-SCEEEEEEEEEEEEECCCSSSBCCTTTCTTCCCEEEEEEECTTSTTCEEEEEEEEBSS
T ss_pred ccCCcceeEEEEeccceeccC-CCccccccccCCceeecCccccccccccCCccccCCEEEecCCCCCCEEEEEEeccCC
Confidence 135665443 222 12 1443221 111 13678999999997 599999998732
Q ss_pred -----------------------------------CCcEEEEEcCC-CCCCccccEEEee----cCceeeeeEEEEECCE
Q 012300 303 -----------------------------------NSELHIGPLTS-DYLDVSNVVRRIL----VGQHREAPALFKHLGT 342 (466)
Q Consensus 303 -----------------------------------n~~i~i~~Ls~-D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~ 342 (466)
++.|.++++++ |++.++ ....++ ....+|+|.|||++|+
T Consensus 272 ~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~a~~~~g~IGLa~~~s~Dl~~We-~~~PL~~a~~v~deiErP~V~~~~Gk 350 (493)
T 1w18_A 272 QRGVANCTEADLGFRPNDPNAETLQEVLDSGAYYQKANIGLAIATDSTLSKWK-FLSPLISANCVNDQTERPQVYLHNGK 350 (493)
T ss_dssp CTTCCCCCHHHHCCCTTCTTCCCHHHHHHTTGGGCCEEEEEEEESSTTSCCEE-EEEEEEECTTTBSCCEEEEEEEETTE
T ss_pred CCcccccccccccccCCccccchhhhcccccchhccceEEEEEeCCCCCccce-ecCccccCCCCCCcEECCeEEEECCE
Confidence 23677788864 455443 222232 1357999999999999
Q ss_pred EEEEEeCC------CCCCCCcEEEEEeCCCCCCceeCC--------Ccccc---C-Cc-----cceeeccCCCceEEEcc
Q 012300 343 YYMVTSGC------TGWAPNEALVHAAESIMGPWEDMG--------NPCIG---G-NK-----VFRLTTFFAQSTYVIPL 399 (466)
Q Consensus 343 YYL~yS~~------tg~~~n~~v~~~Sds~~GPw~~~g--------nPi~~---~-~~-----~~~~~t~~sq~~~v~~~ 399 (466)
||||+|.. ++..++...+++|++++|||+... +|+.. . .+ .-...+|.+++++|++.
T Consensus 351 yYLFtSs~~~t~a~~~~G~~g~yg~VSdsl~GPY~PLn~gsGlVL~~p~~~~~~~~~~~~~~~~~~~~tf~tyS~y~~p~ 430 (493)
T 1w18_A 351 YYIFTISHRTTFAAGVDGPDGVYGFVGDGIRSDFQPMNYGSGLTMGNPTDLNTAAGTDFDPSPDQNPRAFQSYSHYVMPG 430 (493)
T ss_dssp EEEEEEECGGGBCTTCCCCSEEEEEEESSSEECCEESTTTTCEEEECSCCSSSCCCCSSSCCSSSCTTTTSEEEEEEEGG
T ss_pred EEEEEEccCccccCCccCCcceEEEEeCCCCCCCEeccCCCceEecCccccccccccccccccccCCccccceeeEEecC
Confidence 99999822 112234445578999999999652 34320 0 00 00024678889999997
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=164.99 Aligned_cols=206 Identities=20% Similarity=0.278 Sum_probs=130.2
Q ss_pred CcEEEEEeC----CCCCCEEeceeccCCCccccc-cc--CCCCeeeeceEEEEccCCEEEEEEEEeCCC-CCcceEEEEE
Q 012300 189 IGVGCYSSK----DMWTWKNEGIVLAAEETNETH-DL--YKLNVLERPKVIYNDRTGKYVMWMHIDDCN-YTKAAVGVAI 260 (466)
Q Consensus 189 ~gi~v~sS~----DLv~W~~~g~vL~~~~~~~~~-~~--~~~~~iWAP~viyn~~~GkYyly~s~~~~~-~~~~~IGVA~ 260 (466)
..|.++.|+ ||++|+..|.+++..+. +.. +. .+...+|+++++.+ .+|+++|||++...+ ...++|..|+
T Consensus 93 ~hi~~~ys~~g~~dl~~W~~~G~vfp~~~~-~~~~~~~~~~~~g~WSGSAi~~-~dG~i~LfYTg~~~~~~~~q~I~~a~ 170 (447)
T 1oyg_A 93 TSIYMFYQKVGETSIDSWKNAGRVFKDSDK-FDANDSILKDQTQEWSGSATFT-SDGKIRLFYTDFSGKHYGKQTLTTAQ 170 (447)
T ss_dssp CEEEEEEEETTCCSGGGCEEEEESCCTTHH-HHTTCTTGGGCCEEEEEEEEEC-TTSCEEEEEEEEEGGGTTEEEEEEEE
T ss_pred eEEEEEECcCCCcccCCccCCCeecCCCcc-ccccccccCCCCCEECCceEEC-cCCEEEEEEEeecCCCCCceEEEEEe
Confidence 467788888 56999999998775321 100 00 12468999999974 689999999976432 3457787766
Q ss_pred e----CCCCCC----ceeccc-cCCC--------------------CCCccCceEEEcCCCcEEEEEEecC---------
Q 012300 261 S----DYPTGP----FDYLYS-KRPH--------------------GFDSRDMTIFKDDDGVAYLVYSSED--------- 302 (466)
Q Consensus 261 S----dsP~GP----f~~~~~-~~p~--------------------g~~~iDp~vF~DdDG~~YL~~g~~~--------- 302 (466)
+ ++ .|. |+.... +.+. ....|||.||+| +|+.||++++..
T Consensus 171 ~~l~~~~-dgv~~~~~~~~~~l~~~Dg~~Yq~~~q~~~~~~~~~~~~~~fRDP~Vf~d-~G~~ymvfgA~t~~~~g~~~~ 248 (447)
T 1oyg_A 171 VNVSASD-SSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVED-KGHKYLVFEANTGTEDGYQGE 248 (447)
T ss_dssp EEEEECS-SCEEEEEEEEEEEEECCCSSSBCCHHHHHHHTGGGGTCCCCCEEEEEEEE-TTEEEEEEEEEBCTTSCCSSG
T ss_pred cceeecC-CCcceecccCCCceEcCCCccccccccccccccccCCCccccCCCeEEeE-CCEEEEEEeeecCCCCcccch
Confidence 3 22 221 221111 1111 247899999997 699999998852
Q ss_pred -----------------------------------CCcEEEEEcCCCCCCccccEEEee-c---CceeeeeEEEEECCEE
Q 012300 303 -----------------------------------NSELHIGPLTSDYLDVSNVVRRIL-V---GQHREAPALFKHLGTY 343 (466)
Q Consensus 303 -----------------------------------n~~i~i~~Ls~D~~~~~g~~~~i~-~---g~~~EgP~ifK~~G~Y 343 (466)
++.|.++++++|+..++- ...+. . ....|+|.|||++|+|
T Consensus 249 ~~l~~w~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~G~Igl~~~s~Dl~~W~~-~~pL~~~~~v~d~~EcPdlfk~dGky 327 (447)
T 1oyg_A 249 ESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKV-MKPLIASNTVTDEIERANVFKMNGKW 327 (447)
T ss_dssp GGGGBGGGTCSCHHHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECTTSSEEEE-EEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred hhhcchhhcccCcccchhhhhhcccccccccchhcCcEEEEEEcCCCCCCceE-ccccccCCCCCCceEcCcEEEECCEE
Confidence 145667888999865532 12222 1 3579999999999999
Q ss_pred EEEEeCC-C-----CCCCC--cEEEEEeCCCCCCceeC-CC-ccccCCccceeeccCCCceEEEccc
Q 012300 344 YMVTSGC-T-----GWAPN--EALVHAAESIMGPWEDM-GN-PCIGGNKVFRLTTFFAQSTYVIPLA 400 (466)
Q Consensus 344 YL~yS~~-t-----g~~~n--~~v~~~Sds~~GPw~~~-gn-Pi~~~~~~~~~~t~~sq~~~v~~~~ 400 (466)
|||+|.. . ++.++ |.++++|++++|||+.. |. .+++.+ .-....+.+.+.++++..
T Consensus 328 yLf~S~~~s~~~~~g~~~~~vy~~g~vsdsl~GPy~plngsGlVl~~~-~p~~~~~~~ys~ya~p~~ 393 (447)
T 1oyg_A 328 YLFTDSRGSKMTIDGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLKMD-LDPNDVTFTYSHFAVPQA 393 (447)
T ss_dssp EEEEEEEGGGCCCTTCCTTCEEEEEEEESSTTCCCEEGGGTSEEEEEC-CCTTCTTCEEEEEEECCS
T ss_pred EEEEecCCCcccccCcCCCcEEEEEEEcCCCCCCCeeCCCCceeecCC-CCCccccccceeEEEecC
Confidence 9999842 1 22222 23467999999999874 21 222210 000223345567888875
|
| >2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=158.84 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=129.7
Q ss_pred cEEEEEeC----CCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEe-
Q 012300 190 GVGCYSSK----DMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAIS- 261 (466)
Q Consensus 190 gi~v~sS~----DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~S- 261 (466)
.|.++.++ ||++|+..|.+|+..+ ...++|+++++.+ .+|+++|||++...+ ...++|+++..
T Consensus 163 Hi~~~ys~~g~~DLvhW~~~G~~~~~~~--------~~~g~WSGSAi~~-~DG~l~LFYTG~~~~~~~~~~Q~Ia~a~~~ 233 (571)
T 2yfr_A 163 HIYLLYNKYGDNDFNHWKNAGPIFGLGT--------PVIQQWSGSATLN-KDGSIQLYYTKVDTSDNNTNHQKLASATVY 233 (571)
T ss_dssp EEEEEEEETTCCCGGGCEEEEETTCSCC--------TTEEEEEEEEEEC-TTSCEEEEEEEEECTTTTCCEEEEEEEEEE
T ss_pred EEEEEECcCCccccCCccCCCeEcCCCC--------CCCceECCeeEEC-cCCEEEEEEeccccCCCCcccceEEEEEee
Confidence 45566665 7899999999887642 1257999999973 699999999985432 13567776432
Q ss_pred -----CCCCCC---ceeccc-cCC------------------CCCCccCceEEEcCCCcEEEEEEecC------------
Q 012300 262 -----DYPTGP---FDYLYS-KRP------------------HGFDSRDMTIFKDDDGVAYLVYSSED------------ 302 (466)
Q Consensus 262 -----dsP~GP---f~~~~~-~~p------------------~g~~~iDp~vF~DdDG~~YL~~g~~~------------ 302 (466)
++...- |+.... ..+ .....|||.||+|+||++||++++..
T Consensus 234 l~~~~s~dgv~~~kw~~~~~l~~~dg~~Yqt~~q~~~~~~~~~~~~FRDP~Vf~d~dG~~YMVfgA~t~~~~~~G~~~ly 313 (571)
T 2yfr_A 234 LNLEKDQDKISIAHVDNDHIVFEGDGYHYQTYDQWKETNKGADNIAMRDAHVIDDDNGNRYLVFEASTGTENYQGDDQIY 313 (571)
T ss_dssp EEEEGGGTEEEEEEEEEEEEEECCCSSSBCCHHHHHHHCSSCCCCCCEEEEEEECTTCCEEEEEEEEBCTTSCCSGGGGG
T ss_pred eeecccCCCcceecccCCCceecCCCcccccccccccccccCCcccCcCCeEEEeCCCCEEEEEEeccCCCCcccchhhc
Confidence 221111 321111 111 23578999999987899999999751
Q ss_pred --------------------------------CCcEEEEEcCCC---CCCcc--ccEEE-eecCceeeeeEEEEECCEEE
Q 012300 303 --------------------------------NSELHIGPLTSD---YLDVS--NVVRR-ILVGQHREAPALFKHLGTYY 344 (466)
Q Consensus 303 --------------------------------n~~i~i~~Ls~D---~~~~~--g~~~~-i~~g~~~EgP~ifK~~G~YY 344 (466)
++.|.+++++++ ...+. ++... .......|+|.||+.+|+||
T Consensus 314 ~w~~yg~~~~f~~~~~~~v~~~~~~~~~a~~~~G~IgL~~s~dl~~n~~~We~~~pL~~~~~v~dm~EcP~lf~~dG~yy 393 (571)
T 2yfr_A 314 QWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGIIKLNDDVKNPSVAKVYSPLISAPMVSDEIERPDVVKLGNKYY 393 (571)
T ss_dssp BGGGTCSCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEEEECSCTTSCCEEEECCCSEECTTTBSCCEEEEEEEETTEEE
T ss_pred cccccccccccchhhhccccccccccccchhccceEEEEEcCCCcCCcccceeccccccCCCcCceeecCcEEEECCEEE
Confidence 356778887653 22221 21110 01134799999999999999
Q ss_pred EEEeCCC--C-------C-----CCC-cEEEEEeCCCCCCceeC-CCccccCCccceeeccCCCceEEEcccCCc
Q 012300 345 MVTSGCT--G-------W-----APN-EALVHAAESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLP 403 (466)
Q Consensus 345 L~yS~~t--g-------~-----~~n-~~v~~~Sds~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~ 403 (466)
||+|... + + .++ ..++++|++++|||+.. +++++-+++.-....+.+.+.++++..|..
T Consensus 394 L~~S~q~~~~t~~~~~~~A~g~~g~~~~~y~~vSdsl~GPy~plng~glVL~~~~P~~~~~~tyS~Ya~p~~~~~ 468 (571)
T 2yfr_A 394 LFAATRLNRGSNDDAWMATNKAVGDNVAMIGYVSDNLTHGYVPLNESGVVLTASVPANWRTATYSYYAVPVEGRD 468 (571)
T ss_dssp EEEEEEGGGBSCHHHHHHHHHHHSCCEEEEEEEESSSSSCCEETTTTSEEEECCSCTTSTTCEEEEEEEEETTEE
T ss_pred EEEeCCCCcccccccccccccCcCCceEEEEEEeCCCCCCCeeCCCCceeecCCCCCccccccceeEEEecccCC
Confidence 9998421 0 0 133 23346899999999986 555443331111334566678899986643
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=144.33 Aligned_cols=208 Identities=14% Similarity=0.116 Sum_probs=135.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+.+..|+||++||..+.+|++. +.|. .+..|||.|... ..+-.+.+.|+ ++.... -+..-.|.
T Consensus 50 i~~~~S~DLv~W~~~g~~l~~~-----~~~~--~~~~wAP~v~~~-~~~g~~yl~yt------~~~~i~---va~s~~p~ 112 (306)
T 3kst_A 50 FACFSSDDLKNWKREGQALSAT-----DSYG--TWGFWAPEVYYV-ESKKKFYLFYS------AEEHIC---VATSTTPE 112 (306)
T ss_dssp EEEEEESSSSEEEEEEEEEEGG-----GSSC--SSCCEEEEEEEE-TTTTEEEEEEE------ETTEEE---EEEESSTT
T ss_pred EEEEEeCCccccEECceecCCC-----Cccc--ccccccCeEEEE-CCCCEEEEEEE------CCCcEE---EEEcCCCC
Confidence 3467799999999999888765 3565 347899987644 23666756666 221111 11122255
Q ss_pred ceeeCCCCCeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEecee-ccCC
Q 012300 138 RIWLDTEGAPIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIV-LAAE 212 (466)
Q Consensus 138 ~~w~dt~GnpI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~v-L~~~ 212 (466)
.+|.+...+|+. +.||+|+.++ +|++||+-....+ + .++.+.. |.||..|+..... +...
T Consensus 113 Gpw~~~~~~p~~~~~~iDp~vf~D~-dG~~Yl~~~~~~~--------g------~~i~~~~ls~d~~~~~~~~~~~~~~~ 177 (306)
T 3kst_A 113 GPFRQEVKQPIWSEKSIDTSLFIDD-DGTPYLYFVRFTD--------G------NVIWVAQMTDDLMSIKTETLNQCIKA 177 (306)
T ss_dssp CCCBCSSCCCSSSSCCEEEEEEECT-TSCEEEEEEEESS--------S------EEEEEEEBCTTSSCBCGGGCEEEECC
T ss_pred CCcEeCCCccccCCCcccceEEEeC-CCCEEEEEEEeCC--------C------CEEEEEEeCcccccccCcceeeeccC
Confidence 678765455653 5789998874 6888887432110 0 1244444 8899999866532 2222
Q ss_pred CcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-c-ccC----CCC-CCccCce
Q 012300 213 ETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-Y-SKR----PHG-FDSRDMT 285 (466)
Q Consensus 213 ~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~-~~~----p~g-~~~iDp~ 285 (466)
...|.. .....+++|.+++ ++|+|||+|++........+|++|+|++|.|||+.. + ... ..+ ...-..+
T Consensus 178 ~~~w~~--~~~~~~EgP~i~k--~~G~YYL~~S~~~~~~~~y~v~~a~S~s~~GPw~~~~~~pil~~~~~~~~~g~GH~~ 253 (306)
T 3kst_A 178 EVSWEL--LQGKVAEGPSLLK--KNGVYYLIYSANHYENKGYGVGYATSDTPMGPWVKYSKNPLLQGDAATGLVGTGHGA 253 (306)
T ss_dssp CSGGGC--SSSSBEEEEEEEE--ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEECTTCCSBSSBTTTTBCSCEEEE
T ss_pred Ccccee--cCCCceecceEEE--ECCEEEEEEEeCCCCCCCceEEEEEeCCCCCCCEeCCCCeeEeecCCCceecCCCCc
Confidence 233321 1256799999996 899999999976433335689999999999999983 2 111 111 2345678
Q ss_pred EEEcCCCcEEEEEEec
Q 012300 286 IFKDDDGVAYLVYSSE 301 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~ 301 (466)
+|++.||+.||+|.+.
T Consensus 254 ~v~~~~G~~~~vyh~~ 269 (306)
T 3kst_A 254 PFQCKDGSWKYIFHAH 269 (306)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred eEECCCCCEEEEEecc
Confidence 9999999999999874
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=143.98 Aligned_cols=209 Identities=12% Similarity=0.056 Sum_probs=137.4
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 56 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
.-.++..|+||++||..+.+|++.. +.|.. +..|||.|-+. +-.+.+.|+..... ... .....-+..-.
T Consensus 43 ~~~~v~~S~DLv~W~~~g~~l~~~~----~~~~~--~~~WAP~i~~~---~Gkyylyyt~~~~~-~~~-~~~i~va~s~~ 111 (307)
T 3qee_A 43 NEWLVYSSDDMANWEAHGPGLRAKD----FTWAK--GDAWASQVIER---NGKFYWYVTVRHDD-TKP-GFAIGVAVGDS 111 (307)
T ss_dssp EEEEEEEESSSSSCEEEEEEEEGGG----STTEE--EEEEEEEEEEE---TTEEEEEEEEEECT-TSC-SEEEEEEEESS
T ss_pred CcEEEEECCCCCCceECccccccCC----CCccc--CCccCceEEEE---CCEEEEEEEeccCC-CCC-ceEEEEEEECC
Confidence 3456788999999999999887531 45653 46999988876 77776666522110 000 01111112223
Q ss_pred cCceeeCCCCCeEE-------------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEE-EEeCCCCC
Q 012300 136 PGRIWLDTEGAPIQ-------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGC-YSSKDMWT 201 (466)
Q Consensus 136 pg~~w~dt~GnpI~-------------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v-~sS~DLv~ 201 (466)
|..+|.+..|+|+. +.||+++.++ +|++||+-... ++.+ --|+|+.+
T Consensus 112 p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~Dd-dG~~Yl~~g~~------------------~i~~~~l~~d~~~ 172 (307)
T 3qee_A 112 PIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDD-DGQAYLFWGNT------------------RPRYAKLKKNMVE 172 (307)
T ss_dssp TTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEECT-TSCEEEEECSS------------------SCEEEEECTTSSS
T ss_pred CCCCCEeCCCCeeEecCccccCCCCcCcccCceEECC-CCCEEEEEeCC------------------cEEEEEECCcccc
Confidence 66788875556543 4689998864 68888874211 1223 33789999
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCC--CC
Q 012300 202 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPH--GF 279 (466)
Q Consensus 202 W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~--g~ 279 (466)
|+.....+.. ....+++|.+++ ++|+|||+|+.. ...++++|+|++|.|||+..+..... ..
T Consensus 173 ~~g~~~~i~~----------~~~~~EgP~i~k--~~g~YyL~~s~~----~~~~~~~~~s~~~~GP~~~~~il~~~~~~~ 236 (307)
T 3qee_A 173 LDGPIRAIEG----------LPEFTEAIWVHK--YQDNYYLSYAMG----FPEKIGYAMGKSIKGPWVYKGILNEVAGNT 236 (307)
T ss_dssp EEEEEEECCC----------CTTEEEEEEEEE--CC-CEEEEEEET----TTTEEEEEEESSTTCCCEEEEEEECCCBTC
T ss_pred ccCceEEeCC----------CCCccCceEEEE--ECCEEEEEEECC----CCcEEEEEECCCCCCCcEECCEEecCCCcc
Confidence 8866544321 135789999996 999999999984 24789999999999999976422111 13
Q ss_pred CccCceEEEcCCCcEEEEEEecCC--------CcEEEEEc
Q 012300 280 DSRDMTIFKDDDGVAYLVYSSEDN--------SELHIGPL 311 (466)
Q Consensus 280 ~~iDp~vF~DdDG~~YL~~g~~~n--------~~i~i~~L 311 (466)
.....++|++ ||+.||+|..... ..+.+.+|
T Consensus 237 g~gH~~~v~~-~G~~~~~yh~~~~~~~g~~~~R~~~~~~~ 275 (307)
T 3qee_A 237 PTNHQAIIEF-NNKHYFIYHTGAGRPDGGQYRRSVSIDEL 275 (307)
T ss_dssp SCCCCEEEEE-TTEEEEEEEESCCTTTCBTTBCEEEEEEE
T ss_pred cCCCccEEEe-CCcEEEEEccCcccCCCCCcceEEEEEEE
Confidence 4567789987 9999999987531 23556666
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=140.97 Aligned_cols=211 Identities=19% Similarity=0.197 Sum_probs=133.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeec-cCCcceEEeeeCCCCccCCCCCccCCCceeeec
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFL-DENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYP 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~-~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~p 136 (466)
..+..|+||++||.++.+|++. ..+.|. .+..|||.|-... +.+-.+.+.|+.... +-......-+..-.|
T Consensus 46 ~~~~~S~DLv~W~~~g~~l~~~---~~~~~~--~~~~wAP~v~~~~~~~~Gkyylyyt~~~~---~~~~~~i~va~s~~p 117 (311)
T 3qz4_A 46 FKVFSSKNLKTWKEETVILEMG---KNVSWA--NGNAWAPCIEEKKIDGKYKYFFYYSANPT---TNKGKQIGVAVADSP 117 (311)
T ss_dssp ECCEEESSSSSCEECCCCEEBT---TTBTTE--EEEEEEEEEEEEEETTEEEEEEEEEEEET---TCSSCEEEEEEESST
T ss_pred EEEEECCCCCCcEECceecccc---cCCCcc--cCCcCCCeeEEeeecCCCEEEEEEEeccC---CCCCeeEEEEEECCC
Confidence 5788899999999999888654 124666 3479999877652 114456455551110 000011111112235
Q ss_pred CceeeCCCCCeEE---------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEec
Q 012300 137 GRIWLDTEGAPIQ---------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEG 206 (466)
Q Consensus 137 g~~w~dt~GnpI~---------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g 206 (466)
...|.+ .|+||. +.|++|+.++++|++||+-.. .++.+.+ |+|+..++...
T Consensus 118 ~Gpw~~-~~~p~~~~~~~g~~~~iDp~vf~dd~dG~~yl~~g~------------------~~i~~~~l~~d~~~~~~~~ 178 (311)
T 3qz4_A 118 TGPFTD-LGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWGN------------------GYMAGAELNDDMLSIKEET 178 (311)
T ss_dssp TCCCEE-CSSCSBCSCTTSSSBSCCCEEEECTTTCCEEEEECB------------------SSCEEEEBCTTSSSBCGGG
T ss_pred CCCceE-CCcceEcCCCCCCcccccccEEEECCCCcEEEEEcC------------------CCEEEEEeCCcccccCCCc
Confidence 567776 566654 258899886436889988421 1244555 78888887654
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc---cC--CC-C-C
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS---KR--PH-G-F 279 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~---~~--p~-g-~ 279 (466)
..+...+. + .......+++|.|++ ++|+|||+|+.........+|++|+|++|.|||+..+. .. +. + .
T Consensus 179 ~~i~~~~~-~--~~~~~~~~EgP~i~k--~~g~YyL~~s~~~~~~~~y~~~~~~S~~~~GPw~~~~~~pil~~~~~~~~~ 253 (311)
T 3qz4_A 179 TVVLTPKG-G--TLQTYAYREAPYVIY--RKGIYYFFWSVDDTGSPNYHVVYGTAQSPLGPIEVAKEPIVLIQNPKEEIY 253 (311)
T ss_dssp CEECCCCC-C--CTTTTCCCEEEEEEE--ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEEEEEEEEECCBGGGTBE
T ss_pred eEEeCCCC-C--cccccceeeccEEEE--ECCEEEEEEEcCCCCCCCceEEEEEcCCCCCCCEeCCCCcEEecCCCCceE
Confidence 43322111 0 011234689999996 89999999998654333468999999999999998641 11 11 1 2
Q ss_pred CccCceEEEcCCC-cEEEEEEe
Q 012300 280 DSRDMTIFKDDDG-VAYLVYSS 300 (466)
Q Consensus 280 ~~iDp~vF~DdDG-~~YL~~g~ 300 (466)
..-.+++|+++|| +.||+|.+
T Consensus 254 g~gH~~~~~~~~g~~w~~~yh~ 275 (311)
T 3qz4_A 254 GPAHNSILQVPGKDKWYIVYHR 275 (311)
T ss_dssp EEEEEEEEECTTSSCEEEEEEE
T ss_pred cCCCCeEEEcCCCCEEEEEEec
Confidence 3457889998886 79999987
|
| >3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-12 Score=135.25 Aligned_cols=176 Identities=13% Similarity=0.227 Sum_probs=111.8
Q ss_pred eCCCCCCEEeceeccCCCcccccc--cCCCCeeeeceEEEEccCCEEEEEEEEeCC----C-----CCcceEEEEEeC--
Q 012300 196 SKDMWTWKNEGIVLAAEETNETHD--LYKLNVLERPKVIYNDRTGKYVMWMHIDDC----N-----YTKAAVGVAISD-- 262 (466)
Q Consensus 196 S~DLv~W~~~g~vL~~~~~~~~~~--~~~~~~iWAP~viyn~~~GkYyly~s~~~~----~-----~~~~~IGVA~Sd-- 262 (466)
|.|+.+|++.|.|++....++..+ .......|+.+++. ..+|+++|||+.... + ...++|++|+..
T Consensus 130 s~d~~~W~~~G~vf~~~~~~~~~~~~~~~~~~eWSGSAi~-~~DG~i~LFYT~v~~~~~~~g~~~~~~~Q~ia~A~~~i~ 208 (496)
T 3vss_A 130 RPENGGWTYGGLVFKEGVTGQIFEDQSFSHQTQWSGSARV-SKNGEIKLFFTDVAFYRNSDGTNIKPYDPRIALSVGKVK 208 (496)
T ss_dssp SCTTCCCEEEEESSCTTSGGGGCSCTTCSEEEEEEEEEEE-CTTCEEEEEEEEEEECBCTTSCBSSCCEEEEEEEEEEEE
T ss_pred CcccCCcEECccccCCCCCcccccCCCccCCceEecceEE-CCCCeEEEEEEEeecccCCCccccccceeEEEEEeeeee
Confidence 446789999999997654332211 11234579999887 378999999986421 1 124788887732
Q ss_pred -CCCCCc-e---ecc-ccCC-----------CCCCccCceEEEc--CCCcEEEEEEecC---------------------
Q 012300 263 -YPTGPF-D---YLY-SKRP-----------HGFDSRDMTIFKD--DDGVAYLVYSSED--------------------- 302 (466)
Q Consensus 263 -sP~GPf-~---~~~-~~~p-----------~g~~~iDp~vF~D--dDG~~YL~~g~~~--------------------- 302 (466)
+-.|.+ + ... .+.+ .....+||.+|+| +||+.||+|.+..
T Consensus 209 ~d~dgv~~~~~~~~~~l~~~DG~~Yqt~~q~~~~~fRDP~vf~DP~~dG~~YLVFEgnT~~~~~~~~~~~~~~g~~~~~~ 288 (496)
T 3vss_A 209 ANKKGVTLTGFNKVTDLLQADGTYYQTGAQNEFFNFRDPFTFEDPAHPGETFMVFEGNSAMQRETATCNEADLGYRQGDP 288 (496)
T ss_dssp EETTEEEEEEEEEEEEEECCCSSSBCCTTTCTTCCCEEEEEECCTTSTTCCEEEEEEEBSSCGGGCCCCHHHHCCCTTCT
T ss_pred ecCCcceEeccCCCcccccCChhhhhccccccccccCCCeeEecCCCCCcEEEEEecccCCcCccccccccccccccccc
Confidence 112221 1 100 0111 1245799999998 4899999997631
Q ss_pred ----------------CCcEEEEEc-CCCCCCccccEEEee----cCceeeeeEEEEECCEEEEEEeCC------CCCCC
Q 012300 303 ----------------NSELHIGPL-TSDYLDVSNVVRRIL----VGQHREAPALFKHLGTYYMVTSGC------TGWAP 355 (466)
Q Consensus 303 ----------------n~~i~i~~L-s~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~YYL~yS~~------tg~~~ 355 (466)
++.|.++++ ++|++.++ -...|+ ....+|+|.||+++||||||++.. ..-.+
T Consensus 289 ~~~~~~~~~~~~a~~anG~IGLa~~~s~D~~~We-~~~PL~~a~~v~deiErP~vf~~dGKyYLFt~s~~~t~a~~~~g~ 367 (496)
T 3vss_A 289 YAETVDDVNASGATYQIGNVGLAKAKNKQLTEWE-FLPPILSANCVTDQTERPQIYFKDGKSYLFTISHRGTFAAGLDGP 367 (496)
T ss_dssp TCCCHHHHHHHTGGGCEEEEEEEEESSTTSCCEE-EEEEEEEEETTBSCCEEEEEEEETTEEEEEEEECSTTBCTTCCCC
T ss_pred cccccccccccccccccceEEEEEccCCCCCccE-EeCccccCCCCCCceeCCcEEEECCEEEEEEecccccccccCCCC
Confidence 234667777 45665442 111222 235789999999999999999731 11124
Q ss_pred CcEEEEEeCCCCCCceeC
Q 012300 356 NEALVHAAESIMGPWEDM 373 (466)
Q Consensus 356 n~~v~~~Sds~~GPw~~~ 373 (466)
+..++++|+++.|||+..
T Consensus 368 ~~~yGfVSd~L~G~Y~PL 385 (496)
T 3vss_A 368 EGVYGFVGDGIRSDYQPL 385 (496)
T ss_dssp SEEEEEEESSSSBCCEET
T ss_pred ceeEEEecCCCCCCceec
Confidence 455668999999999986
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-12 Score=133.15 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=121.9
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
++.++++. +|+|+||-++..... .| +...+.+++|+||+||+.++.||.....+. .+...+|+++
T Consensus 22 DPnG~~~~--~G~yHlfyQ~~P~~~---~w------g~~~WgHa~S~Dlv~W~~~~~al~~~g~P~----~d~~g~~SGs 86 (518)
T 1y4w_A 22 DPNGLLYH--NGTYHLFFQYNPGGI---EW------GNISWGHAISEDLTHWEEKPVALLARGFGS----DVTEMYFSGS 86 (518)
T ss_dssp EEEEEEEE--TTEEEEEEEECTTCS---SS------CSCEEEEEEESSSSSCEEEEEEECCBTTTS----CCCBEEEEEE
T ss_pred CCCcceEE--CCEEEEEEeeCCCCC---CC------CCcEEEEEEeCCCccEEECCceEecCCCCC----CCCCceEeee
Confidence 34457774 599999998754211 12 235688999999999999999983221110 1346899999
Q ss_pred EEEEccCC----------EEEEEEEEeCCCC-----------CcceEEEEEeCCCCCCceec---cccC--CCC------
Q 012300 231 VIYNDRTG----------KYVMWMHIDDCNY-----------TKAAVGVAISDYPTGPFDYL---YSKR--PHG------ 278 (466)
Q Consensus 231 viyn~~~G----------kYyly~s~~~~~~-----------~~~~IGVA~SdsP~GPf~~~---~~~~--p~g------ 278 (466)
++.+ .+| +++|+|++..... ..+.+++|+|+++...|+.. .... +..
T Consensus 87 av~~-~~~~~g~~~~~~~~~~l~YTg~~~~~~~~~~~~~~~~~~q~q~lA~s~D~g~~w~k~~~~~pvi~~~~~~y~~~~ 165 (518)
T 1y4w_A 87 AVAD-VNNTSGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEY 165 (518)
T ss_dssp EEEC-TTCTTSCCCSSSCCEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGT
T ss_pred EEEc-CCCccccccCCCccEEEEEeeeeccccccccccccccceeEEEEEEEcCCCceEEEcCCCCCeEecCCcccccCC
Confidence 9974 333 8999998763211 24789999999976679875 2211 111
Q ss_pred CCccCceEEEc-CCCcEEEEEEecCCCcEEEEEcCCCCCCccc--cEEEe-ecCceeeeeEEEEE--C----CEEEEEEe
Q 012300 279 FDSRDMTIFKD-DDGVAYLVYSSEDNSELHIGPLTSDYLDVSN--VVRRI-LVGQHREAPALFKH--L----GTYYMVTS 348 (466)
Q Consensus 279 ~~~iDp~vF~D-dDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g--~~~~i-~~g~~~EgP~ifK~--~----G~YYL~yS 348 (466)
...+||.||.+ ++|++||+++-.....+.+.+ ++|+.+++- ..... ..+...|+|.+|+. + ++++|++|
T Consensus 166 ~~fRDP~V~~~~~~g~w~mv~~~g~~~~i~ly~-S~DL~~W~~~~~~~~~~~~~~mwECPdlf~l~~~g~~~~k~vL~~s 244 (518)
T 1y4w_A 166 QNFRDPFVFWHDESQKWVVVTSIAELHKLAIYT-SDNLKDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSG 244 (518)
T ss_dssp TSEEEEEEEEETTTTEEEEEEEEGGGTEEEEEE-ESSSSSCEEEEEECCCSCCSSEEEEEEEEEEEBTTSSCEEEEEEEE
T ss_pred CCcCCCcEeEECCCCcEEEEEEecCCCeEEEEE-CCCCCCCeECccccccCCCCCeEECCeEEEeecCCCCceeEEEEec
Confidence 46799999997 479999994321123466665 788887752 21110 12457999999998 4 59999998
Q ss_pred C
Q 012300 349 G 349 (466)
Q Consensus 349 ~ 349 (466)
.
T Consensus 245 ~ 245 (518)
T 1y4w_A 245 L 245 (518)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-12 Score=133.67 Aligned_cols=180 Identities=15% Similarity=0.174 Sum_probs=126.6
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
++.++++.+.+|+|+||-++.... ..|. ....+.+++|+||+||+.++.||.+.. +..++|.++
T Consensus 24 DPNG~~y~~~~G~YHlFYQ~nP~~---~~wg-----~~~~WGHa~S~DLvhW~~~~~aL~P~~--------d~~G~~SGS 87 (509)
T 3kf3_A 24 DPNGLFYDKTAKLWHLYFQYNPNA---TAWG-----QPLYWGHATSNDLVHWDEHEIAIGPEH--------DNEGIFSGS 87 (509)
T ss_dssp EEEEEEEETTTTEEEEEEEEETTC---SSCC-----SSBEEEEEEESSSSSCEECSCCBCCSS--------TTCEEEEEE
T ss_pred CCcceEEeCCCCEEEEEEecCCCC---CCCC-----CcCEEEEEEccCCCCcEECcccccccc--------cCCCEEece
Confidence 344678876579999999875421 1111 013578999999999999999987643 246799999
Q ss_pred EEEEcc------------CCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCC-CCCCccCceEEEc-CCCcE
Q 012300 231 VIYNDR------------TGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRP-HGFDSRDMTIFKD-DDGVA 294 (466)
Q Consensus 231 viyn~~------------~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p-~g~~~iDp~vF~D-dDG~~ 294 (466)
++.+.. +|+++++|+.... ..+.+++|+|+++...|+.... ... .....+||.||.+ ++|++
T Consensus 88 av~d~~~t~g~~~~~~~p~~~l~~~YTg~~~--~~q~q~lA~S~D~g~~~~k~~~nPVi~~~~~~fRDPkVfw~~~~g~w 165 (509)
T 3kf3_A 88 IVVDHNNTSGFFNSSIDPNQRIVAIYTNNIP--DNQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQW 165 (509)
T ss_dssp EEECTTCTTSCCCTTSCGGGCEEEEEEEEET--TEEEEEEEEESSSSSSCEECTTCCSBCCSCSSCEEEEEEEETTTTEE
T ss_pred EEEeCCccccccccccCCCCceEEEECCCCC--CCeeEEEEEECCCCcceEEcCCCceEcCCCCcccCCeEEEECCCCEE
Confidence 997432 3689999987543 3578999999987668886431 111 2346899999975 57899
Q ss_pred EEEEEecCCCcEEEEEcCCCCCCccc--cEEEeecCceeeeeEEEEE------CCEEEEEEeC
Q 012300 295 YLVYSSEDNSELHIGPLTSDYLDVSN--VVRRILVGQHREAPALFKH------LGTYYMVTSG 349 (466)
Q Consensus 295 YL~~g~~~n~~i~i~~Ls~D~~~~~g--~~~~i~~g~~~EgP~ifK~------~G~YYL~yS~ 349 (466)
||+.+....+.+.+.+ |+|+.+++- ....-..+...|+|-+|+. +++++|++|.
T Consensus 166 ~Mv~g~~~~g~i~ly~-S~DL~~W~~~~~~~~~~~G~mwECPdlf~l~~~~~~~~k~vL~~s~ 227 (509)
T 3kf3_A 166 IMVVSKSQEYKIQIFG-SANLKNWVLNSNFSSGYYGNQYECPGLIEVPIENSDKSKWVMFLAI 227 (509)
T ss_dssp EEEEEEGGGTEEEEEE-ESSSSSCEEEEEECCBCCCSCEEEEEEEEEEBTTSSCEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEE-CCCCCCceEccccccCCccceeECCeEEEECccCCCCceEEEEEcc
Confidence 9999865445566665 788888752 2211112457999999998 4799999984
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=134.06 Aligned_cols=124 Identities=18% Similarity=0.289 Sum_probs=81.9
Q ss_pred CcEEEEEeCCCCCCEEeceeccCCC--cccc-----------cccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-----
Q 012300 189 IGVGCYSSKDMWTWKNEGIVLAAEE--TNET-----------HDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN----- 250 (466)
Q Consensus 189 ~gi~v~sS~DLv~W~~~g~vL~~~~--~~~~-----------~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~----- 250 (466)
.++.+..|.|+. |+..+.++.... ..|. ...++...+|+|.|++ .+|+|||+|++...+
T Consensus 201 i~va~A~S~DG~-W~~~~~pli~~~~~~~~~~e~d~~~~~~~~~~wd~~~v~~P~v~~--~~G~yyl~Ys~~~~g~~~~~ 277 (408)
T 3p2n_A 201 VGLAWADSPDGP-WTKSEEPILSPADNGVWKGEEQDRFAVIKKGDFDSHKVHDPCIIP--YKGKFYLYYKGEQMGEAITF 277 (408)
T ss_dssp EEEEEESSTTCC-CEECSSCSBCCCSCCEECSSSCCTTCEEECCSTTSSEEEEEEEEE--ETTEEEEEEEEECTTCCEET
T ss_pred eEEEEEECCCCC-EEECCcceeCCCCCceEEEecCCcccccccceecCCCeEcceEEE--ECCEEEEEEEcccCcccccc
Confidence 356677899997 999765442211 0000 0012356689999997 899999999987531
Q ss_pred -CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCc
Q 012300 251 -YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDV 318 (466)
Q Consensus 251 -~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~ 318 (466)
....+||||+|++|.|||+..... |.-....||.||.++||.+||+.. .+.+...+.+ ++|+..+
T Consensus 278 ~~~~~~igvA~Sdd~~Gpw~k~~~n-PVl~~~~dp~Vw~~~dG~y~mi~~-~g~gh~~i~~-S~Dg~~W 343 (408)
T 3p2n_A 278 GGRQIRHGVAIADNPKGPYVKSPYN-PISNSGHEICVWPYNGGIASLITT-DGPEKNTIQW-APDGINF 343 (408)
T ss_dssp TEECCEEEEEEESSTTCCCEECTTC-CSCSSCSSCCEEEETTEEEEEECS-SSTTCSEEEE-ESSSSCC
T ss_pred CCCccEEEEEEECCCCCCcEECCCC-CcccCCCCCeeEecCCCEEEEEEE-CCCCcEEEEE-CCCCCEE
Confidence 113789999999999999986321 222235699999988998888843 2233334433 6776654
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-12 Score=134.73 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=135.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCC-----CcccccCCCcccceeeeeccC-CcceEEeeeCCCCccCCCCCccCCCc
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRS-----PRAAKRRPKRTTTLIDEFLDE-NSQLRHVFFPDMKTAIDPMKDNGNDS 131 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~~v~~f~~~-~~~v~~~~~p~~~t~~dp~~~~~~~~ 131 (466)
+++..|+||++||..+.+++....... +.|+. ..|||.|...... +-.+.+.|+ +.. ....-+
T Consensus 62 i~i~~S~DLv~W~~~g~v~~~~~~~~~~g~~~~~w~~---~~WAP~v~~~~~~g~g~yylyyt------~~~--~~i~va 130 (487)
T 3c7f_A 62 VFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAG---ASWAPSIAVKKINGKDKFFLYFA------NSG--GGIGVL 130 (487)
T ss_dssp EEEEEESSSSSEEEEEEECCBCSTTGGGGTCSBTTCS---CCEEEEEEEEEETTEEEEEEEEE------STT--BCEEEE
T ss_pred eEEEECCCCcCcEEccccccCCcccccccccccCccc---cCcchheEEEecCCCCeEEEEEE------cCC--cEEEEE
Confidence 446679999999999988866411111 56763 6899988764211 235544444 111 111111
Q ss_pred eeeecCceeeCCCCCeEE------------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEE-EeCC
Q 012300 132 FYYYPGRIWLDTEGAPIQ------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCY-SSKD 198 (466)
Q Consensus 132 ~~i~pg~~w~dt~GnpI~------------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~-sS~D 198 (466)
..-.|..+|.+..|+|+. +.||+++.|+ +|++||+-......... ...+. ..+...+.+. -++|
T Consensus 131 ~s~~p~Gpw~~~~g~pli~~~~~g~~~~~~~iDp~vf~Dd-dG~~Yl~~g~~~~~~~~-~~~~~-~~~~~~~~~~~l~~d 207 (487)
T 3c7f_A 131 TADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDD-DGTGYLYAGGGVPGVSN-PTQGQ-WANPKTARVIKLGPD 207 (487)
T ss_dssp EESSTTCCCBCSSSSCSBCTTSTTCTTCSSBCCCEEEECT-TSCEEEEEECCCSSTTS-CCHHH-HHCCCCEEEEEECTT
T ss_pred EeCCCCCCcccCCCCeEeecCCCCccCCCCccCCceEEcC-CCCEEEEECCcccCccc-ccccc-ccCCCceEEEEECCC
Confidence 122366678765555443 4689998875 57888774421100000 00000 0011224443 4789
Q ss_pred CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCCCCCCceeccc
Q 012300 199 MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDYPTGPFDYLYS 273 (466)
Q Consensus 199 Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~SdsP~GPf~~~~~ 273 (466)
|..|+.....+. ....+++|.|++ ++|+|||+|+.... .....+|+||+|++|.|||++.+.
T Consensus 208 ~~~~~g~~~~i~-----------~p~~~Egp~i~k--~~G~YYl~ys~~~~~t~~~~~~~~~i~~~~S~s~~GP~~~~~~ 274 (487)
T 3c7f_A 208 MTSVVGSASTID-----------APFMFEDSGLHK--YNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGH 274 (487)
T ss_dssp SSSEEEEEEEEC-----------CTTEEEEEEEEE--ETTEEEEEEEECSSSCCCTTSCTTSEEEEEESSTTCCCEEEEE
T ss_pred eeeccCccEEec-----------CCceEecceEEE--ECCEEEEEEECCCCCCcccCCCCceeEEEEcCCCCCCceECce
Confidence 999987765443 124689999996 89999999987531 112468999999999999998643
Q ss_pred cCCC-----C-CCccCceEEEcCCCcEEEEEEecC-----------CCcEEEEEcC
Q 012300 274 KRPH-----G-FDSRDMTIFKDDDGVAYLVYSSED-----------NSELHIGPLT 312 (466)
Q Consensus 274 ~~p~-----g-~~~iDp~vF~DdDG~~YL~~g~~~-----------n~~i~i~~Ls 312 (466)
.... + .....++||.+ +|+.||+|.... ...+.+.+|.
T Consensus 275 il~~~~~~~~~~g~gH~~v~~~-~G~w~~~yh~~~~~~~~~g~~~~~R~~~i~~v~ 329 (487)
T 3c7f_A 275 FLKNPGAFFGGGGNNHHAVFNF-KNEWYVVYHAQTVSSALFGAGKGYRSPHINKLV 329 (487)
T ss_dssp EECCHHHHHSSCCCCCEEEEEE-TTEEEEEEEESHHHHHHHSSCTTCCEEEEEECC
T ss_pred eccCCCcccCCCCCCCceEEEE-CCeEEEEEecccccccccCCCCCccceEEEEEE
Confidence 2111 1 12346788876 899999998631 2456777774
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=130.55 Aligned_cols=151 Identities=13% Similarity=0.231 Sum_probs=95.7
Q ss_pred ceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCC-CCCEEeceeccCCC--ccccc-----------c
Q 012300 154 GILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDM-WTWKNEGIVLAAEE--TNETH-----------D 219 (466)
Q Consensus 154 ~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DL-v~W~~~g~vL~~~~--~~~~~-----------~ 219 (466)
+|++. +|+||||-|....... + .....+.++.|+|+ .+|+..+..+.... ..|.. .
T Consensus 129 svi~~--dGkyyL~Yt~~~~~~~-----~---~~~~~igvA~Sdd~~Gpw~~~~~Pvi~~~~~~~w~~ddd~~~~~~~~~ 198 (374)
T 3r4z_A 129 EVLRH--NGTYYLVYQTVKAPYL-----N---RSLEHIAIAYSDSPFGPWTKSDAPILSPENDGVWDTDEDNRFLVKEKG 198 (374)
T ss_dssp EEEEE--TTEEEEEEEEECSSCC-----T---TCCBEEEEEEESSTTCCCEECSSCSBCCCCCSEECSSSSCTTCEEECC
T ss_pred EEEEE--CCEEEEEEEeccCCCC-----C---CCcceEEEEEECCCCCCeEECCCCEeCCCcCCceeecCCceEEEecCC
Confidence 44443 4788887764321000 0 01235778899986 68999764332221 11211 0
Q ss_pred cCCCCeeeeceEEEEccCCEEEEEEEEeCCC----CC--cceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCc
Q 012300 220 LYKLNVLERPKVIYNDRTGKYVMWMHIDDCN----YT--KAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGV 293 (466)
Q Consensus 220 ~~~~~~iWAP~viyn~~~GkYyly~s~~~~~----~~--~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~ 293 (466)
.+....+|+|.|++ .+|+|||||++...+ .+ ..+|+||+|++|+|||+.... .|.-...+||.||++++|.
T Consensus 199 ~~d~~~~~~P~v~~--~~g~yyl~Y~~~~~~~~~~~~~~~~~igvA~sds~~Gpw~~~~~-~Pi~~~~~dp~V~~~~~g~ 275 (374)
T 3r4z_A 199 SFDSHKVHDPCLMF--FNNRFYLYYKGETMGESMNMGGREIKHGVAIADSPLGPYTKSEY-NPITNSGHEVAVWPYKGGM 275 (374)
T ss_dssp STTSSEEEEEEEEE--ETTEEEEEEEEECTTCCEETTEECEEEEEEEESSTTCCCEECTT-CCCCSSCSSCCEEEETTEE
T ss_pred ccccCccccceEEE--ECCEEEEEEEecCCCCccccCCCcceEEEEEECCCCCCCEECCC-CCEeCCCCCCceEEeCCEE
Confidence 12345789999996 899999999987532 11 358999999999999998532 2222346799999988877
Q ss_pred EEEEEEecCCCcEEEEEcCCCCCCcc
Q 012300 294 AYLVYSSEDNSELHIGPLTSDYLDVS 319 (466)
Q Consensus 294 ~YL~~g~~~n~~i~i~~Ls~D~~~~~ 319 (466)
+||+.... .+...++. ++|++.+.
T Consensus 276 ~~mv~~~g-~~~~~l~~-S~Dg~~W~ 299 (374)
T 3r4z_A 276 ATMLTTDG-PEKNTCQW-AEDGINFD 299 (374)
T ss_dssp EEEECSSS-TTCSEEEE-ETTSSSCE
T ss_pred EEEEEecC-CCceEEEE-CCCcCCeE
Confidence 78876432 22224455 89988764
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-11 Score=123.65 Aligned_cols=201 Identities=13% Similarity=0.070 Sum_probs=129.1
Q ss_pred CceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe-ceeccCCCcccccccCCCCee-eece
Q 012300 153 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE-GIVLAAEETNETHDLYKLNVL-ERPK 230 (466)
Q Consensus 153 ~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~-g~vL~~~~~~~~~~~~~~~~i-WAP~ 230 (466)
+++++. +|+||||.+..... ....+.++.|+|+++|+.. +.+|....... .....+ |.|.
T Consensus 59 ~~~i~~--~g~~~lfY~~~~~~------------~~~~~~~A~S~Dgi~w~~~~~pvl~p~~~~~----~~~~g~~yDP~ 120 (338)
T 1vkd_A 59 SAVVPY--NGEFVGVFRIDHKN------------TRPFLHFGRSKDGINWEIEPEEIQWVDVNGE----PFQPSYAYDPR 120 (338)
T ss_dssp EEEEEE--TTEEEEEEEEEETT------------SCEEEEEEEESSSSSCEECSSCCCEECTTSC----BCCCSSEEEEE
T ss_pred cEEEEE--CCEEEEEEEEECCC------------CcEEEEEEEeCCCCccEECCCCEEeCCCCCc----cccCCEEeCcE
Confidence 466664 59999998753210 1235788999999999987 34554331110 123568 7999
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcC-CCcEEEEEEec-----CCC
Q 012300 231 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDD-DGVAYLVYSSE-----DNS 304 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~Dd-DG~~YL~~g~~-----~n~ 304 (466)
|++ .+|+|||+|++ .. ...+|++|+|++. ..|+..+...+ ...+|+.+|... ||++||+++.. ..+
T Consensus 121 v~~--~~d~yym~yt~-~~--~~~~i~la~S~Dl-~~W~~~~~i~~--~~~rd~~~fp~~i~Gky~m~~~~q~~~~~~~~ 192 (338)
T 1vkd_A 121 VVK--IEDTYYITFCT-DD--HGPTIGVGMTKDF-KTFVRLPNAYV--PFNRNGVLFPRKINGKYVMLNRPSDNGHTPFG 192 (338)
T ss_dssp EEE--ETTEEEEEEEE-ES--SSEEEEEEEESSS-SSEEEECCSSS--SSEEEEEECSSCBTTBEEEEEEECCSSSCSCC
T ss_pred EEE--ECCEEEEEEEE-cC--CcceEEEEEECCC-CeEEECCccCC--CcCCceEEEEEEECCEEEEEEEecCCCCCCCc
Confidence 997 78999999998 54 3578999999985 46887653322 245888888643 89999999652 235
Q ss_pred cEEEEEcCCCCCCccccEEEeec-Cc--eee------eeEEEEECCEEEEEEeCCC--CCCCCcEEEEE-e--CCCCCCc
Q 012300 305 ELHIGPLTSDYLDVSNVVRRILV-GQ--HRE------APALFKHLGTYYMVTSGCT--GWAPNEALVHA-A--ESIMGPW 370 (466)
Q Consensus 305 ~i~i~~Ls~D~~~~~g~~~~i~~-g~--~~E------gP~ifK~~G~YYL~yS~~t--g~~~n~~v~~~-S--ds~~GPw 370 (466)
.|.+++ ++|+..+.. ...++. .. ..| ||.+|+.++.++|+|++.. .....|.+++. . ++|.-.-
T Consensus 193 ~I~~a~-S~Dl~~W~~-~~~l~~~~~~~~wE~~~ig~gp~~i~~~~gwll~y~G~~~~~~~~~Y~~G~alld~~dp~~vi 270 (338)
T 1vkd_A 193 DIFLSE-SPDMIHWGN-HRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVL 270 (338)
T ss_dssp CEEEEE-ESSSSCBEE-EEEEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECSSCTTSEE
T ss_pred EEEEEE-cCCcccCCc-CceEEcCCCCCCcccCccccCCCcEEeCCcEEEEEecccCCCCCcEEEEEEEEEcCCCCceEE
Confidence 788877 678877752 223332 22 355 7999999777899997532 11122555542 2 3343333
Q ss_pred eeCCCccccCC
Q 012300 371 EDMGNPCIGGN 381 (466)
Q Consensus 371 ~~~gnPi~~~~ 381 (466)
....+|++...
T Consensus 271 ~r~~~p~l~p~ 281 (338)
T 1vkd_A 271 YRSRYYLLTPE 281 (338)
T ss_dssp EEBSSCSBCCC
T ss_pred EcCCCCEEcCC
Confidence 33456777653
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-12 Score=133.25 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=124.2
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-++..... .| +...+..++|+||+||+..+.+|.+... .+..++|.+++
T Consensus 55 PNG~~y~--~G~YHlFYQ~~P~~~---~w------g~~~WgHa~S~DLvhW~~~~~aL~P~~~------~d~~g~~SGSa 117 (526)
T 3pij_A 55 PNGLCFY--KGRWHVFYQLHPYGT---QW------GPMHWGHVSSTDMLNWKREPIMFAPSLE------QEKDGVFSGSA 117 (526)
T ss_dssp EEEEEEE--TTEEEEEEEEETTCS---SS------CSBEEEEEEESSSSSEEECCCCBCCCBG------GGTTEEEEEEE
T ss_pred CeEEEEE--CCEEEEEEEcCCCCC---Cc------CCcEEEEEEeCCCCCceeCeeccCCCCc------cccCCeEeceE
Confidence 3457775 599999998754211 11 2356889999999999999998876542 14578999999
Q ss_pred EEEccCCEEEEEEEEeCC----C-CC--cceEEEEEeCCCC-CCceecccc--CCCC---CCccCceEEEcCCCcEEEEE
Q 012300 232 IYNDRTGKYVMWMHIDDC----N-YT--KAAVGVAISDYPT-GPFDYLYSK--RPHG---FDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~----~-~~--~~~IGVA~SdsP~-GPf~~~~~~--~p~g---~~~iDp~vF~DdDG~~YL~~ 298 (466)
+. ..+|+++|+|++... + .+ .+.+++|+|++.. -.|+..... .|.+ ...+||.||. ++|++||+.
T Consensus 118 v~-~~dg~~~l~YTg~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~pvi~~P~~~~~~~fRDP~V~~-~~g~w~mv~ 195 (526)
T 3pij_A 118 VI-DDNGDLRFYYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWK-TGDTWYMTF 195 (526)
T ss_dssp EE-CTTSCEEEEEEEEEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEEEEECCCGGGEEEEEEEEEEEE-ETTEEEEEE
T ss_pred EE-ccCCEEEEEEecccCcccccCCCCceeEEEEEEECCCCcceEEECCccccCCCCccccccccCEEEE-ECCEEEEEE
Confidence 97 357899998887531 1 11 3679999999863 478865411 1221 3579999998 688999999
Q ss_pred Eec--C-CCcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECC-----EEEEEEeC
Q 012300 299 SSE--D-NSELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLG-----TYYMVTSG 349 (466)
Q Consensus 299 g~~--~-n~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G-----~YYL~yS~ 349 (466)
+.. + .+.+.+.+ |+|+.+++-.-.... .+...|+|-+|+.+| +++|++|.
T Consensus 196 ga~~~~~~G~i~ly~-S~Dl~~W~~~g~l~~~~~~~g~mwECPdlf~l~~~~g~~k~vL~~s~ 257 (526)
T 3pij_A 196 GVSSADKRGQMWLFS-SKDMVRWEYERVLFQHPDPDVFMLECPDFSPIKDKDGNEKWVIGFSA 257 (526)
T ss_dssp EEEETTSCEEEEEEE-ESSSSSCEEEEEEEECSCTTCCEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEecCCCCcEEEEEE-CCCCCcceEcCcccccCCCccCeEECCEEEEECCCCCceeEEEEEec
Confidence 842 2 23455665 789888753211111 245799999999988 99999984
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=127.09 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=122.7
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCccccc-----CCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCce
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKR-----RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF 132 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~ 132 (466)
+.+..|+||++||..+.+|+++ +.|... .+..|||.|-.. +-.+.+.|+-. +.........+
T Consensus 28 i~~~~S~DL~~W~~~g~~l~~~-----~~~~~~~~~~~~~~~wAP~v~~~---~g~~ylyyt~~-----~~~~~~~~igv 94 (318)
T 1gyh_A 28 ITIYSSKDRVNWRYSDRAFATE-----PTWAKRVSPSFDGHLWAPDIYQH---KGLFYLYYSVS-----AFGKNTSAIGV 94 (318)
T ss_dssp CEEEEESSSSEEEEEEESSSSC-----CTTHHHHCTTCCSEEEEEEEEEE---TTEEEEEEEEC-----CTTSCCEEEEE
T ss_pred cEEEECCCCCCccCCCcccCCC-----cccccccCCCcCcccccCeEEEE---CCEEEEEEEec-----cCCCCcceEEE
Confidence 3467789999999999999876 667641 357999988876 66775555521 11100000001
Q ss_pred eee----cCce---eeCCCCCeE---------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-
Q 012300 133 YYY----PGRI---WLDTEGAPI---------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS- 195 (466)
Q Consensus 133 ~i~----pg~~---w~dt~GnpI---------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s- 195 (466)
... |..+ |.+. +..+ .+.||++++++ +|++||+-... ..++.+.+
T Consensus 95 a~s~~~dp~gp~~~w~~~-~~v~~~~~~~~~~~~iDp~vf~D~-dG~~Yl~~g~~----------------~~~i~~~~l 156 (318)
T 1gyh_A 95 TVNKTLNPASPDYRWEDK-GIVIESVPQRDLWNAIAPAIIADD-HGQVWMSFGSF----------------WGGLKLFKL 156 (318)
T ss_dssp EEESCSCTTSTTCCCEEE-EEEEEECTTTCSSCCCCCEEEECT-TSCEEEEECBS----------------TTCEEEEEB
T ss_pred EEeCCCCCCCCCcceecC-CcccccCCCCCCCCcccCCeEECC-CCCEEEEeecc----------------CCCEEEEEe
Confidence 111 3444 6542 1111 24589998864 57888874321 12455666
Q ss_pred eCCC------CCCEEec---eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCC
Q 012300 196 SKDM------WTWKNEG---IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDY 263 (466)
Q Consensus 196 S~DL------v~W~~~g---~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~Sds 263 (466)
+.|+ +.|+... ........ ......+++|.|++ ++|+|||+|+.... .....+++||+|++
T Consensus 157 ~~d~~~~g~~~~w~~~~~~~~~~~~~~~-----~~~~~~~EgP~i~k--~~g~yYL~~s~~~~~~g~~~~y~~~~~rS~s 229 (318)
T 1gyh_A 157 NDDLTRPAEPQEWHSIAKLERSVLMDDS-----QAGSAQIEAPFILR--KGDYYYLFASWGLCCRKGDSTYHLVVGRSKQ 229 (318)
T ss_dssp CTTSSSBCSSCCEEEEECCCCCTTSCTT-----SCCSCCEEEEEEEE--ETTEEEEEEEESCCSCGGGCCCEEEEEEESS
T ss_pred CCccccccceeecceecccCcceeeccc-----CCCCcceeccEEEE--ECCEEEEEEEeCCCcCCCCCcceEEEEEcCC
Confidence 4453 3454320 00000000 01245799999996 89999999997521 11346899999999
Q ss_pred CCCCceec-ccc-C---------CCC--CCccCceEEEcCCCcEEEEEEec
Q 012300 264 PTGPFDYL-YSK-R---------PHG--FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 264 P~GPf~~~-~~~-~---------p~g--~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
|.|||++. +.. . ..+ ......++|++ ||+.||+|...
T Consensus 230 ~~GP~~~~~g~p~~~~~g~~~~~~~~~~~g~GH~~~~~~-~G~~~~~yh~~ 279 (318)
T 1gyh_A 230 VTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTW-DGKDYLVLHAY 279 (318)
T ss_dssp TTSCCBCTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCCCcCCCCEeecCCCcEEecCCCcEEcCCCCEEEEc-CCCEEEEEecc
Confidence 99999975 211 1 111 12457788988 89999999863
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-11 Score=126.99 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=121.7
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
++.++++. +|+|+||-++.... ..| +...+.+++|+||+||++++.+|+. . .+..+|..+
T Consensus 43 DPNG~~y~--~G~YHlFYQ~~P~~---~~w------g~~~WgHa~S~DLvhW~~~~~aL~d--~-------~g~~~~SGS 102 (516)
T 3sc7_X 43 EPNGLIKI--GSTWHLFFQHNPTA---NVW------GNICWGHATSTDLMHWAHKPTAIAD--E-------NGVEAFTGT 102 (516)
T ss_dssp EEEEEEEE--TTEEEEEEEEETTC---STT------CCCEEEEEEESSSSSCEEEEEEECC--B-------TTEEEEEEE
T ss_pred CCeeeEEE--CCEEEEEEeCCCCC---Ccc------CCCEEEEEEeCCCCcceecCccccC--C-------CCceeEece
Confidence 44567775 59999999875421 112 2356889999999999999999931 1 233579999
Q ss_pred EEEEccC---------CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cC------CCC----CCccCceEEEc
Q 012300 231 VIYNDRT---------GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KR------PHG----FDSRDMTIFKD 289 (466)
Q Consensus 231 viyn~~~---------GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~------p~g----~~~iDp~vF~D 289 (466)
++.++.+ ++++|+|++.......+.+++|+|++....|+.... .. |.+ ...+||.||.+
T Consensus 103 av~~~~~~~g~~~~~~~~l~l~YTg~~~~~~~q~q~lA~s~D~g~~w~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~ 182 (516)
T 3sc7_X 103 AYYDPNNTSGLGDSANPPYLAWFTGYTTSSQTQDQRLAFSVDNGATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFH 182 (516)
T ss_dssp EEECTTCTTSSSCSSSCCEEEEEEEEETTTTEEEEEEEEESSTTSCCEECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEE
T ss_pred EEEeCCcccccccCCCCeEEEEEeeeeCCCCceEEEEEEecCCCceEEEcCCCceEcCCCcccccccCCCcccCCeEEEE
Confidence 9874332 258888887643334578999999986557886431 11 112 25699999987
Q ss_pred -CCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEee---cC-----ceeeeeEEEEE------CCEEEEEEeCC
Q 012300 290 -DDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRIL---VG-----QHREAPALFKH------LGTYYMVTSGC 350 (466)
Q Consensus 290 -dDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~---~g-----~~~EgP~ifK~------~G~YYL~yS~~ 350 (466)
++|++||+.+....+.+.+.+ |+|+.+++-.-.... .+ ...|+|-+|+- +++++|++|..
T Consensus 183 ~~~g~w~mv~g~~~~~~i~ly~-S~DL~~W~~~~~l~~~~~~g~~~~~~mwECPdlf~l~~~g~~~~k~VL~~s~~ 257 (516)
T 3sc7_X 183 RQSGNWIMVLAHGGQDKLSFWT-SADTINWTWQSDLKSTSINGLSSDITGWEVPDMFELPVEGTEETTWVVMMTPA 257 (516)
T ss_dssp TTTTEEEEEEECBTTCEEEEEE-ESSSSSCEEEEEEEGGGSTTCCTTCCCBCCCEEEEEECSSSSCEEEEEEECCS
T ss_pred CCCCeEEEEEEECCCCEEEEEE-CCCCCCceEcccccccCCCCcccccceEECCcEEEecccCCCCceEEEEECCC
Confidence 478999999754334566665 788888752211111 12 37999999997 36999999853
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-11 Score=126.06 Aligned_cols=172 Identities=14% Similarity=-0.016 Sum_probs=121.5
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-++..... .| + . +..++|+||+||+..+.+|.+.+ ...+|.+++
T Consensus 16 PNG~~y~--~G~YHlFYQ~~P~~~---~~------g-~-WgHa~S~DLvhW~~~~~aL~P~~---------~~g~~SGSa 73 (492)
T 4ffh_A 16 PQRPVTT--HGAYQLYYLHSDQNN---GP------G-G-WDHASTTDGVAFTHHGTVMPLRP---------DFPVWSGSA 73 (492)
T ss_dssp EEEEEEE--TTEEEEEEEEESSTT---CC------C-E-EEEEEESSSSSCEEEEEEECCBT---------TBCCCCEEE
T ss_pred CeeeEEE--CCEEEEEEECCCCCC---CC------C-c-EEEEEeCCCCccEECCCCCCCCC---------CCCEEeceE
Confidence 3467775 599999998754211 11 1 2 88999999999999999988643 246899999
Q ss_pred EEEccCC-------EEEEEEEEeCC-CCCcceEEEEEeCCCCCCceecc-cc--CCCCCC------------ccCceEEE
Q 012300 232 IYNDRTG-------KYVMWMHIDDC-NYTKAAVGVAISDYPTGPFDYLY-SK--RPHGFD------------SRDMTIFK 288 (466)
Q Consensus 232 iyn~~~G-------kYyly~s~~~~-~~~~~~IGVA~SdsP~GPf~~~~-~~--~p~g~~------------~iDp~vF~ 288 (466)
+.++ +| +++|+|++... ....+.+++|+|+++...|+..+ .. .|.... .+||.||.
T Consensus 74 v~~~-~~~~g~~~~~~~l~YTg~~~~~~~~q~q~lA~S~D~g~~w~k~~nPvi~~p~~~~~~~~~~~~~~~~fRDP~V~~ 152 (492)
T 4ffh_A 74 VVDT-ANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHW 152 (492)
T ss_dssp EEET-TCSSSSCTTEEEEEEEEEGGGCGGGEEEEEEEESSSSSSCEECSSCSBCCTTTTTCCSHHHHHHHTCEEEEEEEE
T ss_pred EEeC-CCccccCCCcEEEEEeecccCCCCcEEEEEEEeCCCCceEEEcCccccCCCCccccccccccccCCCCcCCEEEE
Confidence 9743 33 59999987643 12357899999998655888752 11 122333 79999999
Q ss_pred c-CCCcEEEEEEecCCCcEEEEEcCCCCCCcc--ccEEEe-ecCceeeeeEEEEEC-----CEEEEEEeC
Q 012300 289 D-DDGVAYLVYSSEDNSELHIGPLTSDYLDVS--NVVRRI-LVGQHREAPALFKHL-----GTYYMVTSG 349 (466)
Q Consensus 289 D-dDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~--g~~~~i-~~g~~~EgP~ifK~~-----G~YYL~yS~ 349 (466)
+ ++|++||+.+. .+.+.+.+ |+|+.+++ +....- ..+...|+|-+|+.+ ++++|++|.
T Consensus 153 ~~~~g~w~mv~a~--~~~i~ly~-S~DL~~W~~~~~~~~~~~~g~mwECPdlf~l~~~~~~~k~vL~~s~ 219 (492)
T 4ffh_A 153 DTARGEWVCVIGR--LRYAAFYT-SPNLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASM 219 (492)
T ss_dssp ETTTTEEEEEEEE--TTEEEEEE-ESSSSSCEECCCEECSCGGGCCCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred ECCCCEEEEEEEC--CCeEEEEE-CCCCCCceEeccccccCCccceEECCeEEEECCCCCCceEEEEEcc
Confidence 7 58899999943 24566666 68888875 332211 123579999999987 699999994
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=122.62 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=120.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccc------cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCc
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAK------RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDS 131 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~ 131 (466)
+.+..|+||++||..+.+|++. +.|.. ..+..|||.|-.. +-.+.+.|+.... .+.. ....-+
T Consensus 45 i~i~~S~DLv~W~~~g~~l~~~-----~~~~~~~~~~~~~~~~wAP~v~~~---~g~yylyyt~~~~--~~~~-~~igva 113 (314)
T 3cu9_A 45 IQIKTSEDGVHWENMGWVFPSL-----PDWYKQYVPEKDEDHLWAPDICFY---NGIYYLYYSVSTF--GKNT-SVIGLA 113 (314)
T ss_dssp SEEEEESSSSEEEEEEESCSSC-----CTTHHHHCTTCCSCEEEEEEEEEE---TTEEEEEEEECCT--TCCC-EEEEEE
T ss_pred eeEEECcCCCCccCCCcccCCc-----chhhhccCCCcccCceecCcEEEE---CCEEEEEEEeccC--CCCC-ceEEEE
Confidence 3467889999999999999876 56653 1357999998876 6677555552110 0000 000000
Q ss_pred ee--eecCce---eeCCCCCeE--------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eC
Q 012300 132 FY--YYPGRI---WLDTEGAPI--------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SK 197 (466)
Q Consensus 132 ~~--i~pg~~---w~dt~GnpI--------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~ 197 (466)
.. +-|..+ |.+. +..+ .+.||+++.++ +|++||+-... ..++.+.+ +.
T Consensus 114 ~s~~~dP~gp~~~w~~~-~~~~~~~~~~~~~~iDp~vf~D~-dG~~Yl~~g~~----------------~~~i~~~~l~~ 175 (314)
T 3cu9_A 114 TNQTLDPRDPDYEWKDM-GPVIHSTASDNYNAIDPNVVFDQ-EGQPWLSFGSF----------------WSGIQLIQLDT 175 (314)
T ss_dssp EESCSCTTSTTCCCEEE-EEEEEECTTSSSCCCSCEEEECT-TSCEEEEECBS----------------TTCEEEEECCT
T ss_pred EeCCCCCCCCCcCcccC-CeEecCCCCCCCCccCCCeEEcC-CCCEEEEEecc----------------CCcEEEEEECc
Confidence 00 113344 6542 1111 24589998864 57888874321 12455666 34
Q ss_pred CCCCCEE--eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceecc
Q 012300 198 DMWTWKN--EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 198 DLv~W~~--~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~ 272 (466)
|+..... ....+.... .....+++|.|++ ++|+|||+|+.... .....+++||+|++|.|||++..
T Consensus 176 d~~~~~~~~~~~~~~~~~-------~~~~~~EgP~i~k--~~G~yyL~~s~~~~~~g~~~~y~~~~~~s~s~~GP~~~~~ 246 (314)
T 3cu9_A 176 ETMKPAAQAELLTIASRG-------EEPNAIEAPFIVC--RNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDKN 246 (314)
T ss_dssp TTCSCCTTCCCEEEECCS-------SSSCCEEEEEEEE--ETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTSCCBCTT
T ss_pred ccCcccCCCceEEecccC-------CCCCccCccEEEE--ECCEEEEEEEcCCcccCCCCcceEEEEEeCCCCCCCCcCC
Confidence 4432210 011111100 1245799999996 89999999987421 11246899999999999999752
Q ss_pred -ccC----------CCC--CCccCceEEEcCCCcEEEEEEec
Q 012300 273 -SKR----------PHG--FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 273 -~~~----------p~g--~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
... +.+ ......++|++ ||+.||+|...
T Consensus 247 ~~p~~~~~~~~~~~~~~~~~g~GH~~~~~~-~g~~~~~yh~~ 287 (314)
T 3cu9_A 247 GVSMMQGGGTILDEGNDRWIGPGHCAVYFS-GVSAILVNHAY 287 (314)
T ss_dssp SCBGGGTCCEEEECCCSSEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCccccCCCcEeecCCCcEEcCCCCEEEEc-CCCEEEEEEee
Confidence 110 111 11356688988 99999999863
|
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=133.30 Aligned_cols=202 Identities=15% Similarity=0.058 Sum_probs=128.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC--CccCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM--KDNGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~--~~~~~~~~~i~ 135 (466)
.++..|+||++||.++.+|++.. .+.|.. ..-.|||.|... ..+-.+.+.|+ +.+.. .....-+..-.
T Consensus 53 i~v~sS~DLvnW~~~G~aL~~~~---~~~~~~-~~~~WAP~V~y~-~~dGkYYLyyt-----~~~~~~~~~~igVAtSds 122 (441)
T 3nqh_A 53 FSCYSSDDLVNWKFERVVLPMQS---SGILGP-DRVGERVKVMKC-PSTGEYVMYMH-----ADDMNYKDPHIGYATCST 122 (441)
T ss_dssp EEEEEESSSSSCEEEEEEECCCS---SSTTST-TEEEEEEEEEEC-TTTCCEEEEEE-----EEETTSCSCEEEEEEESS
T ss_pred eeEEECCCCCCcEECceeeccCC---ccccCC-CCccCCceeEEE-ccCCEEEEEEE-----eCCCCCCcceEEEEEeCC
Confidence 56788999999999999998751 123543 224799987653 12666755555 11111 01111112223
Q ss_pred cCceeeCC-----CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceecc
Q 012300 136 PGRIWLDT-----EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLA 210 (466)
Q Consensus 136 pg~~w~dt-----~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~ 210 (466)
|..+|.+. +|.++.+.||+++.|+ +|++||+-.. ..| +--++|+..++.....+.
T Consensus 123 P~GPwt~~gpl~~~g~~~~~IDPsvF~Dd-DGk~YL~~g~------------------~~I-~eLs~D~~~~~g~~~~i~ 182 (441)
T 3nqh_A 123 IAGEYKLHGPLLYEGKPIRRWDMGTYQDT-DGTGYLLLHG------------------GIV-YRLSKDYRTAEEKVVSGV 182 (441)
T ss_dssp TTSCCEEEEECEETTEECCCCSEEEEECT-TSCEEEEEGG------------------GEE-EEECTTSSSEEEEEESCS
T ss_pred CCCCceEcceeecCCCcccccCceEEEeC-CCCEEEEeCC------------------CcE-EEeCCccccccCceEEeC
Confidence 56677651 2334445699998875 6889988421 012 123789998876543221
Q ss_pred CCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCC---CCccCceEE
Q 012300 211 AEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHG---FDSRDMTIF 287 (466)
Q Consensus 211 ~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g---~~~iDp~vF 287 (466)
.+..++||.|++ ++|+|||+|+... .+....+.||+|++|+|||++.+...+.+ +.+.+..||
T Consensus 183 -----------~g~~~EgP~i~K--~~G~YYL~~S~~~-g~~~~~~~~arS~s~~GPw~~~g~i~~~~~~t~~sQ~t~vl 248 (441)
T 3nqh_A 183 -----------GGSHGESPAMFK--KDGTYFFLFSNLT-SWEKNDNFYFTAPSVKGPWTRQGLFAPEGSLTYNSQTTFVF 248 (441)
T ss_dssp -----------TTCCCEEEEEEE--ETTEEEEEEECSC-TTSCCCCEEEEESSTTCCCEEEEESSCTTSHHHHCEEEEEE
T ss_pred -----------CCCceECcEEEE--ECCEEEEEEeCCC-CcCCCceEEEEeCCCCCCceECCccCCCCCccCcCCCceEE
Confidence 134579999997 8999999999742 12223578999999999999876554443 457788888
Q ss_pred EcC--CCcEEEEEEecCC
Q 012300 288 KDD--DGVAYLVYSSEDN 303 (466)
Q Consensus 288 ~Dd--DG~~YL~~g~~~n 303 (466)
... .+..||+.+.+.+
T Consensus 249 ~v~G~~~~~~i~~GDrW~ 266 (441)
T 3nqh_A 249 PLKCGEDTIPMFMGDRWS 266 (441)
T ss_dssp EEEETTEEEEEEEEEECC
T ss_pred EeCCCCCeEEEEeccccC
Confidence 763 3357999988543
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=123.37 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=116.5
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-++..... .| +...+.+++|+||+||+.++.+|.+... ++..++|.+++
T Consensus 34 PNG~~y~--~G~YHLFYQ~nP~~~---~w------g~~~WGHa~S~DLvhW~~~p~AL~P~~~------~D~~G~~SGSa 96 (546)
T 3ugf_A 34 PDGPIFY--KGWYHFFYQYNPDNP---VW------GNNTWGHTVSRDLIHWLYLPLALAADQW------YDMQGVFSGSA 96 (546)
T ss_dssp EEEEEEE--TTEEEEEEEEESSCS---SS------CSCEEEEEEESSSSSCEECCCCBCSCSG------GGTTCEEEEEE
T ss_pred CceeEEE--CCEEEEEEecCCCCC---CC------CCcEEEEEEcCCcCccccCCCCCCCCcc------cccCCcCcceE
Confidence 3456775 599999998754211 11 2356889999999999999999886542 13467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC----CCceecc--cc--CCCC---CCccCceE-EEcCCCcEEEEEE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT----GPFDYLY--SK--RPHG---FDSRDMTI-FKDDDGVAYLVYS 299 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~----GPf~~~~--~~--~p~g---~~~iDp~v-F~DdDG~~YL~~g 299 (466)
+. ..+|+++|+|++...+ ..+.+++|+|++.. ..|+... .. .|.+ ...+||.| +.++||++||+.+
T Consensus 97 vv-~~dg~~~l~YTg~~~~-~~q~q~lA~S~D~~d~~l~~w~K~~~nPVi~~p~g~~~~~fRDPkVvw~~~~g~w~MviG 174 (546)
T 3ugf_A 97 TC-LPDGRIMMLYTGVTKE-MVEMLSLAYPADLSDPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIG 174 (546)
T ss_dssp EE-CTTSCEEEEEEEECTT-CCEEEEEEEESCTTCTTCCCEEECTTCCCBCCCTTSCTTSCCCBCCCEECSTTCEEEEEE
T ss_pred EE-eeCCeEEEEEEeccCC-CcEEEEEEEECCCCCCccceeEEcCCCceEeCCCCCCcceeeccceEeECCCCEEEEEEE
Confidence 75 3789999999987543 35789999999864 4677642 11 2333 36899995 5567999999998
Q ss_pred ecCC--CcEEEEEcCCCCCCcc--ccEEE-eecCceeeeeEEEEEC
Q 012300 300 SEDN--SELHIGPLTSDYLDVS--NVVRR-ILVGQHREAPALFKHL 340 (466)
Q Consensus 300 ~~~n--~~i~i~~Ls~D~~~~~--g~~~~-i~~g~~~EgP~ifK~~ 340 (466)
+..+ +.+.+.+ ++|+.+++ +.... .......|+|-+|+.+
T Consensus 175 a~~~~~G~vllY~-S~DL~~W~~~~~~~~~~~~~gmwECPDlf~l~ 219 (546)
T 3ugf_A 175 AKYNTTGIAMVYE-TKDFKSFKLLEELLHAVPDTGLWECVDLYPVS 219 (546)
T ss_dssp EEETTEEEEEEEE-ESSSSSCEECSSCSEEETTCCCEEEEEEEEEE
T ss_pred EccCCcceEEEEE-CCCCCCceEcccccccCCCCCeEECCeEEEEC
Confidence 7532 2344454 78888775 33211 1112479999999874
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=123.11 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=115.9
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-++..... .| +...+..+.|+||+||+..+.+|.+... .+..++|.+++
T Consensus 24 PnG~~~~--~G~yHlFyQ~~P~~~---~~------g~~~WgHa~S~Dlv~W~~~~~aL~P~~~------~D~~G~~SGsa 86 (541)
T 2ac1_A 24 PNGPMIY--KGIYHLFYQWNPKGA---VW------GNIVWAHSTSTDLINWDPHPPAIFPSAP------FDINGCWSGSA 86 (541)
T ss_dssp EEEEEEE--TTEEEEEEEECTTCS---SS------CSCEEEEEEESSSSSBEEEEEEECCCSG------GGTTCEEEEEE
T ss_pred CCccEEE--CCEEEEEEeeCCCCC---CC------CCcEEEEEECCCccceEECceeecCCCc------cccCCEEcceE
Confidence 3456665 599999998754211 11 2356889999999999999999876532 13567999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC----CCceecc--cc--CC--CC---CCccCce-EEEcCCCcEEEE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT----GPFDYLY--SK--RP--HG---FDSRDMT-IFKDDDGVAYLV 297 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~----GPf~~~~--~~--~p--~g---~~~iDp~-vF~DdDG~~YL~ 297 (466)
+. ..+|+++|||++.+.+ ..+.+++|+|++.. ..|+... +. .+ .+ ...+||. ++.++||++||+
T Consensus 87 v~-~~dg~~~l~YTg~~~~-~~~~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~~~~~~~~~fRDP~vvw~~~~g~w~m~ 164 (541)
T 2ac1_A 87 TI-LPNGKPVILYTGIDPK-NQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVI 164 (541)
T ss_dssp EE-CTTSCEEEEEEEECTT-SCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTTCCCTTSEECCCCCEECTTSCEEEE
T ss_pred EE-eeCCEEEEEEEEeCCC-CcEEEEEEEECCCCCCCceeEEecCCCcEEcCCCCCCCCCCceECCeEEeEeCCCeEEEE
Confidence 86 3589999999985332 36789999998863 5687642 11 12 22 3578999 566669999999
Q ss_pred EEecCC--CcEEEEEcCCCCCCcc--ccE-EEeecCceeeeeEEEEEC
Q 012300 298 YSSEDN--SELHIGPLTSDYLDVS--NVV-RRILVGQHREAPALFKHL 340 (466)
Q Consensus 298 ~g~~~n--~~i~i~~Ls~D~~~~~--g~~-~~i~~g~~~EgP~ifK~~ 340 (466)
+++..+ +.+.+.+ ++|+.+++ +.+ .....+...|+|-+|+.+
T Consensus 165 ~ga~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~mwECPdlf~l~ 211 (541)
T 2ac1_A 165 IGSKIHRRGLAITYT-SKDFLKWEKSPEPLHYDDGSGMWECPDFFPVT 211 (541)
T ss_dssp EEEEETTEEEEEEEE-ESSSSSCEECSSCSEEEETSCCEEEEEEEEEE
T ss_pred EEEecCCceEEEEEE-CCCCCCcEEcccccccCCCCCcccCCcEEEEC
Confidence 987422 3355555 78888775 222 111124579999999975
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-10 Score=113.55 Aligned_cols=243 Identities=10% Similarity=0.107 Sum_probs=143.8
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe-ceeccCCCcccccccCCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE-GIVLAAEETNETHDLYKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~-g~vL~~~~~~~~~~~~~~~~iWA 228 (466)
++.|++++. +|+||||-|....... ..+. ....+.++.|+|+++|+.. +.+|........ .......++.
T Consensus 50 v~sgsai~~--dG~y~lfYtg~~~~~~-~~~~-----~~~~ig~A~S~Dgi~w~~~~~pvl~p~~~~~~-~~~~~~~~~D 120 (356)
T 3taw_A 50 TFNPAATIY--DGKIVVMYRAEDNSAQ-GIGS-----RTSRLGYATSTDGIHFERDTKPAFYPAKDNQA-ENECPGGTED 120 (356)
T ss_dssp EEEEEEEEE--TTEEEEEEEEECSSSC-STTS-----SCEEECCEEESSSSSCEECSSCSBCCCSSTTH-HHHTTTEEEE
T ss_pred eECcEEEEE--CCEEEEEEEEEcCCCc-cCCC-----ceeEEEEEEeCCCccceECCcceecCCCcccc-ccccCCceEC
Confidence 345677764 5999999886432100 0000 1234678899999999984 455543321100 0000357899
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCC-------CCCccCceEEE----------cCC
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPH-------GFDSRDMTIFK----------DDD 291 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~-------g~~~iDp~vF~----------DdD 291 (466)
|.|++. .+|+|||+|+.... ...+|++|+|++. ..|+..+..... .....|.++|- ..+
T Consensus 121 P~v~~~-~dg~y~m~yt~~~~--~~~~i~la~S~Dl-~~W~~~g~i~~~~~~~~~~~~~~k~~~l~p~~~~g~p~v~k~~ 196 (356)
T 3taw_A 121 PRIAMT-EDGTYVLLYTQWNR--KVPRLAVATSKDL-KHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVN 196 (356)
T ss_dssp EEEEEC-TTSCEEEEEEEECS--SCEEEEEEEESSS-SSCEEEEETTSSHHHHTTTTSCCCCEEEEEEEETTEEEECCBT
T ss_pred CEEEEE-CCCEEEEEEEEeCC--CCceEEEEECCCC-CCceEeeeEcCCccccccccccCCccEEeecccCCCceEEEEC
Confidence 999972 38999999997643 3578999999985 478876543221 12345666663 358
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCCCCccc------cEEEeec---C----cee-eeeEEEEECCEEEEEEeCCCCC----
Q 012300 292 GVAYLVYSSEDNSELHIGPLTSDYLDVSN------VVRRILV---G----QHR-EAPALFKHLGTYYMVTSGCTGW---- 353 (466)
Q Consensus 292 G~~YL~~g~~~n~~i~i~~Ls~D~~~~~g------~~~~i~~---g----~~~-EgP~ifK~~G~YYL~yS~~tg~---- 353 (466)
|++||+|+ ...|.+++ ++|+..++. +...++. + ..+ .||..++.++.++|+|.+...-
T Consensus 197 G~y~m~~g---~~~I~la~-S~Dl~~W~~~~~~~~~~~~~l~~~~~~wd~~~ig~gp~pI~t~~Gwll~YhGv~~~~~~~ 272 (356)
T 3taw_A 197 GKYFMYWG---EKNVYAAT-SDNLIDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDGIVLLYNGKNEPGEKG 272 (356)
T ss_dssp TBEEEEEC---SSSBEEEE-ESSSSSCEECBCTTSSBCCSBCCCTTSSCSSEEEECSCEEEETTEEEEEEEEECCSGGGS
T ss_pred CEEEEEeC---CceeeEEE-CCCcccCeeccccCCCcceEecCCCChheeccccCCCccEEECCcEEEEEeccccccccc
Confidence 99999997 35688776 678777653 1222322 1 234 6788899887799999753211
Q ss_pred -----CCCcEEEEE---eCCCCCCceeCCCccccCCccceeec-cCCCc---eEEEcccCCcccEEEEEe
Q 012300 354 -----APNEALVHA---AESIMGPWEDMGNPCIGGNKVFRLTT-FFAQS---TYVIPLAGLPGLYIFMAD 411 (466)
Q Consensus 354 -----~~n~~v~~~---Sds~~GPw~~~gnPi~~~~~~~~~~t-~~sq~---~~v~~~~G~~~~yi~~~d 411 (466)
...|.+++. -++|.........|++.........+ |..+- ...+..+| +++|||+-
T Consensus 273 ~~~~~~~~Y~~g~~lld~~dp~kvi~r~~~p~l~P~~~~E~~G~yv~nvvf~~g~~~~~~--~~~iyYg~ 340 (356)
T 3taw_A 273 DTAYPANSYCAGQALFDVNNPTKLIGRLDKPFLQPTDDFEKSGQYPAGTVFVEGLVYYRN--KWYLYYGC 340 (356)
T ss_dssp CTTSCTTCEEEEEEEECSSSTTCEEEECSSCSBCCCSHHHHSSSSTTCBEEEEEEEEETT--EEEEEEEE
T ss_pred cccccCceEEEEEEEEcCCCCCEeeecCCCCeEcCCCCcccCCcccCCEEEeCCeEeCCC--EEEEEecc
Confidence 134666654 34555444445678887543211122 23332 11223344 78999984
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=117.40 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=108.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCccccc-----CCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCce
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKR-----RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF 132 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~ 132 (466)
+.+..|+||++||..+.+|+++ |.|.+. .+..|||.|-.. +-.+.+.|+.. +... ....+
T Consensus 37 i~i~~S~DLv~W~~~g~~l~~~-----~~w~~~~~~~~~~~~wAP~v~~~---~G~yylyyt~~-----~~~~--~~~~i 101 (293)
T 1uv4_A 37 LRVLKSSDAKNWTVQKSIFTTP-----LSWWSNYVPNYGQNQWAPDIQYY---NGKYWLYYSVS-----SFGS--NTSAI 101 (293)
T ss_dssp EEEEEESSSSSCEEEEEETSSC-----CGGGGGTSTTCCSBCEEEEEEEE---TTEEEEEEEEC-----CTTC--SCEEE
T ss_pred eEEEECCCCCCccCCCccCCCC-----CcccccccccCCCceecceEEEE---CCEEEEEEEec-----CCCC--CcceE
Confidence 4467789999999999999876 677642 357999988876 66775656521 1100 00111
Q ss_pred ee----ecC-ceeeCCCCCeE--------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCC
Q 012300 133 YY----YPG-RIWLDTEGAPI--------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKD 198 (466)
Q Consensus 133 ~i----~pg-~~w~dt~GnpI--------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~D 198 (466)
.+ .|- ..|.+. +.+| .+.||++++++ +|++||+-... ..++.+.+ +.|
T Consensus 102 ~va~s~~p~~Gpw~~~-~~~l~~~~~~~~~~iDp~vf~d~-dG~~Yl~~g~~----------------~~~i~~~~l~~d 163 (293)
T 1uv4_A 102 GLASSTSISSGGWKDE-GLVIRSTSSNNYNAIDPELTFDK-DGNPWLAFGSF----------------WSGIKLTKLDKS 163 (293)
T ss_dssp EEEEESCTTTTCCEEE-EEEEEECTTSSSCCCSCEEEECT-TSCEEEEECBS----------------TTCEEEEEECTT
T ss_pred EEEECCCCCCCCCccC-CccEecCCCCCCCCCCCCeEECC-CCCEEEEEEec----------------CCCEEEEEECch
Confidence 11 132 345542 2222 23589988864 68888873211 12455655 567
Q ss_pred CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceec
Q 012300 199 MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 199 Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~ 271 (466)
+..+......+.... .....+++|.|++ ++|+|||+|+.... .....+++||+|++|+|||+..
T Consensus 164 ~~~~~g~~~~i~~~~-------~~~~~~EgP~i~k--~~g~yyL~~s~~~~~~g~~~~y~~~~~~s~~~~GP~~~~ 230 (293)
T 1uv4_A 164 TMKPTGSLYSIAARP-------NNGGALEAPTLTY--QNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDK 230 (293)
T ss_dssp TCSEEEEEEEEECCT-------TTTTCEEEEEEEE--ETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBCT
T ss_pred hCccCCcceEEeecC-------CCCCccCccEEEE--ECCEEEEEEEeCCCcCCCCCcceEEEEEeCCCCCCCCcc
Confidence 766554333222111 1245799999996 89999999997631 1235689999999999999975
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-10 Score=123.08 Aligned_cols=178 Identities=13% Similarity=0.084 Sum_probs=121.7
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceecc-CcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDI-IGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~-~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
+.++++. +|+|+||-++..... .| +. ..+..+.|+||+||+..+.+|.+... .+..++|.++
T Consensus 23 PnG~~~~--~G~yHlFYQ~~P~~~---~~------g~~~~WgHa~S~Dlv~W~~~~~aL~P~~~------~D~~Gv~SGs 85 (543)
T 1st8_A 23 PNGPMLY--QGVYHFFYQYNPYAA---TF------GDVIIWGHAVSYDLVNWIHLDPAIYPTQE------ADSKSCWSGS 85 (543)
T ss_dssp EEEEEEE--TTEEEEEEEEESSCS---SC------CSCCEEEEEEESSSSSEEECCCSBCCCSG------GGTTEEEEEE
T ss_pred CcccEEE--CCEEEEEEeeCCCCC---CC------CCccEEEEEECCCccceEECCeeccCCCc------cccCCEEcce
Confidence 3346665 599999988753211 11 23 46789999999999999999876432 2356899999
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC----CCceecc--cc--CCCC---CCccCce-EEEcCCCcEEEEE
Q 012300 231 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT----GPFDYLY--SK--RPHG---FDSRDMT-IFKDDDGVAYLVY 298 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~----GPf~~~~--~~--~p~g---~~~iDp~-vF~DdDG~~YL~~ 298 (466)
++.+ .+|+++|||++.+.+ ..+.+++|+|++.. ..|+... +. .|.+ ...+||. ++.++||++||++
T Consensus 86 av~~-~dg~~~l~YTg~~~~-~~q~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~g~~~~~fRDP~vvw~~~~g~w~mv~ 163 (543)
T 1st8_A 86 ATIL-PGNIPAMLYTGSDSK-SRQVQDLAWPKNLSDPFLREWVKHPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVV 163 (543)
T ss_dssp EEEE-TTTEEEEEEEEECTT-SCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTCCTTSEECCCCCEECTTSCEEEEE
T ss_pred EEEe-eCCEEEEEEEEeCCC-CcEEEEEEEECCCCCCCcceeEEcCCCcEEeCCCCCCcCccCCCeEEEECCCCcEEEEE
Confidence 9862 589999999984332 36789999998863 5687642 11 2233 4579999 5776799999999
Q ss_pred EecCC--CcEEEEEcCCCCCCcc--ccEE-EeecCceeeeeEEEEEC--C-------------EEEEEEeC
Q 012300 299 SSEDN--SELHIGPLTSDYLDVS--NVVR-RILVGQHREAPALFKHL--G-------------TYYMVTSG 349 (466)
Q Consensus 299 g~~~n--~~i~i~~Ls~D~~~~~--g~~~-~i~~g~~~EgP~ifK~~--G-------------~YYL~yS~ 349 (466)
++..+ +.+.+.+ ++|+.+++ +.+. ........|+|-+|+.+ | +++|.+|.
T Consensus 164 ga~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~mwECPdlf~l~~~g~~~l~~s~~g~~~~~vl~~s~ 233 (543)
T 1st8_A 164 GGDRDNNGMAFLYQ-STDFVNWKRYDQPLSSADATGTWECPDFYPVPLNSTNGLDTSVYGGSVRHVMKAGF 233 (543)
T ss_dssp EEEETTEEEEEEEE-ESSSSSCEECSSCSEEETTCCCCEEEEEEEEETTCSCCCCTTCCSTTEEEEEEEEE
T ss_pred EEecCCceEEEEEE-CCCCCCcEECccccccCCCCCceeCCcEEEECCCCccceEecCCCCCceEEEEecc
Confidence 87422 3355555 78888775 2221 11123579999999986 2 67777774
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=117.32 Aligned_cols=214 Identities=11% Similarity=0.089 Sum_probs=116.8
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCce---eeec
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF---YYYP 136 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~---~i~p 136 (466)
...|+||++|+..+.... ..... ..+. .+..|||.|.+. +-.+.+.|+..... .......+... .-.|
T Consensus 44 i~~S~DL~~w~~~~~~~~-~~~~~-~~~~--~~~~WAP~v~~~---~G~yylyys~~~~~--~~~~~~~~~~~~~~~~~~ 114 (330)
T 3k1u_A 44 VRKAKTIEGLRNAEPVDV-WRRHE-SGEM--SNLIWAPEIHFI---NGAWYIYFAAAPDK--NIEDDTFNHRMFVIQNEN 114 (330)
T ss_dssp EEEESSTGGGTTSCCEEE-EECCS-SSTT--SEEEEEEEEEEE---TTEEEEEEEEESSS--CCBTTBCCCEEEEEEECS
T ss_pred EEEcCCcCCccCCcceee-cccCC-CCcc--CCCeECCEEEEE---CCeEEEEEEeccCC--CCCCcccceeeeEEEeCC
Confidence 356899999997653321 10011 1222 346899999887 77776666521111 00000011111 1112
Q ss_pred CceeeCCC--------CCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec--
Q 012300 137 GRIWLDTE--------GAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG-- 206 (466)
Q Consensus 137 g~~w~dt~--------GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g-- 206 (466)
..+|.+.- .....+.|++++.| ++++||+|........ ...+|.+.+.+|. ++..+
T Consensus 115 ~gP~~~~~~~~~~~~~~~~~~~IDp~vf~D-dd~~~~~~~~~~~~~~-----------~~~~i~i~~l~~~--~~~~g~~ 180 (330)
T 3k1u_A 115 ENPFTGNWVEKGRIKTAWESFSLDATIFEH-NEKLYYVWAQQDINIK-----------GHSNIYIAEMENP--WTLKTKP 180 (330)
T ss_dssp SSTTSSCCEEEEECCCSSCSCEEEEEEEEE-TTEEEEEEEECCTTSS-----------SSBEEEEEEEEET--TEECSCC
T ss_pred CCCccccccccccccCCCCCCccCceEEEE-CCccEEEEeecCCCcC-----------CCceEEEEECCCC--ccccCCc
Confidence 22221110 00012457788876 5789999987543110 1234556554442 33332
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc---cCC------C
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS---KRP------H 277 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~---~~p------~ 277 (466)
..+......|. ......+++|.|++ ++|+|||+|++...+ ...++++|+|++|.|||....- ..| .
T Consensus 181 ~~i~~~~~~~e--~~~~~~~EGp~i~k--~~G~YYL~ys~~~~~-~~y~~~~~~s~~~~gP~~~~~~~~~~~pi~~~~~~ 255 (330)
T 3k1u_A 181 VMLTKPELEWE--IKGFWVNEGPAVLK--KNGKIFITYSASATD-VNYCIGMLTAEENSNLLDKNSWTKSQTPVFKTSME 255 (330)
T ss_dssp EEEECSCSGGG--CSSSCBEEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEEETTSCTTSGGGCEECSSCSBCCBTT
T ss_pred EEecCCCcccc--ccCCceeeCCEEEE--ECCEEEEEEEeCCCC-CCceEEEEEECCCCCCCCCccccccCCCEEEcCCC
Confidence 33333333332 12345689999996 899999999976543 3578999999999999864210 011 0
Q ss_pred -C-CCccCceEEEcCCC-cEEEEEEec
Q 012300 278 -G-FDSRDMTIFKDDDG-VAYLVYSSE 301 (466)
Q Consensus 278 -g-~~~iDp~vF~DdDG-~~YL~~g~~ 301 (466)
+ ...-..++|+++|| +.||+|...
T Consensus 256 ~~~~g~GH~s~v~~~dG~~~~~~yH~~ 282 (330)
T 3k1u_A 256 NHQYGPGHNSFTVSEDGKHDVIVYHAR 282 (330)
T ss_dssp TTBEEEEEEEEEECTTSCSEEEEEEEE
T ss_pred CceeeCCcCeEEECCCCCEEEEEEccc
Confidence 0 11236788998887 589999864
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=120.45 Aligned_cols=125 Identities=15% Similarity=0.273 Sum_probs=79.7
Q ss_pred cEEEEEeCC-CCCCEEeceec-cCC-Cccccc-----------ccCCCCeeeeceEEEEccCCEEEEEEEEeCCC----C
Q 012300 190 GVGCYSSKD-MWTWKNEGIVL-AAE-ETNETH-----------DLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN----Y 251 (466)
Q Consensus 190 gi~v~sS~D-Lv~W~~~g~vL-~~~-~~~~~~-----------~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~----~ 251 (466)
.|.+..|++ ...|+..+..+ ... +..|.. ..++...+++|.|++ .+|+|||||++...+ .
T Consensus 195 ~IgvA~Sdsp~Gpwt~~~~Pvl~~~~~~~W~~ddd~~~~~~~~~~wD~~~~~~P~v~~--~~g~yyl~Ysg~~~~~~~~~ 272 (404)
T 4ak5_A 195 TIGMACADSPEGLWTKTDKPVLEPSDTGEWEGDEDNRFKVVSKGDFDSHKVHDPCIIP--YNGKFYMYYKGERMGEEITW 272 (404)
T ss_dssp EEEEEEESSTTCCCEECSSCSBCCCSCCEECSSSSCTTCEEECCSTTSSEEEEEEEEE--ETTEEEEEEEEECTTCCEET
T ss_pred eEEEEEEeCCCCCceECCCceecCCCCcceeeccCceeeeccCCcccCCcEECCEEEE--ECCEEEEEEECCCCCCcccc
Confidence 466777765 35899876533 222 112211 112456799999996 899999999987532 1
Q ss_pred C--cceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCcc
Q 012300 252 T--KAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVS 319 (466)
Q Consensus 252 ~--~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~ 319 (466)
+ ..+||||+|++|.|||+..... |.-....++.||.++||.+||+.... .+...++. ++|+..+.
T Consensus 273 ~~~~~~igvA~Sdd~~Gpw~k~~~n-Pv~~~~~e~~Vw~~~dg~~~ll~~~g-~~~g~l~~-S~Dg~~W~ 339 (404)
T 4ak5_A 273 GGREIKHGVAIAENPMGPYVKSEYN-PISNSGHEVCVWPYKGGIASLITTDG-PEKNTLQW-SPDGINFE 339 (404)
T ss_dssp TEECCEEEEEEESSTTCCCEECTTC-CSCSSCSSCCEEEETTEEEEEECSSS-TTCSEEEE-ESSSSCCE
T ss_pred CCCcceEEEEEECCCCCCcEECCCC-ceecCCCcceEEEeCCcEEEEEEecC-CCceEEEE-CCCCCeEE
Confidence 1 4689999999999999975321 22122357899998888778886432 22223333 67776653
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=124.97 Aligned_cols=210 Identities=10% Similarity=0.050 Sum_probs=120.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
+.+..|+||++||..+.+|+.+. .-...-....+..|||.|-.. +..+.+.|+.. ...........+++.
T Consensus 37 i~i~~S~DLv~W~~~g~~l~~~~-~~~~~~~~~~~~~WAP~i~~~---~g~~yl~yt~~----~~~~g~~~~~~~~va~s 108 (533)
T 1yif_A 37 VQIHHSKDLVNWHLVAHPLQRVS-QLDMKGNPNSGGVWAPCLSYS---DGKFWLIYTDV----KVVDGAWKDCHNYLVTC 108 (533)
T ss_dssp CEEEEESSSSSEEEEECSBCSTT-TCCCTTCCTTCBBCSCEEEEE---TTEEEEEEEEE----CCCSSSCCCEEEEEEEE
T ss_pred eEEEEeCCCCCCeECCccccCcc-cccccCCCCCCCEECceEEEE---CCEEEEEEEec----cCCCCCcccccEEEEEe
Confidence 45677899999999999887651 000000011457999998876 67775555511 100000000112221
Q ss_pred --cCceeeCCCCCeE----EeeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece
Q 012300 136 --PGRIWLDTEGAPI----QAHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI 207 (466)
Q Consensus 136 --pg~~w~dt~GnpI----~ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~ 207 (466)
|..+|.+ |+ .+.||+++.|+ +|+.||+ +.+...... ....+|.+.+ +.|+........
T Consensus 109 ~~p~Gpw~~----p~~~~~~~iDp~~f~D~-dG~~Yl~~~~~~~~~g~---------~~~~~i~~~~l~~d~~~~~g~~~ 174 (533)
T 1yif_A 109 ETINGDWSE----PIKLNSSGFDASLFHDT-DGKKYLLNMLWDHRIDR---------HSFGGIVIQEYSDKEQKLIGKPK 174 (533)
T ss_dssp SSTTSCCCC----CEECCCSCSCCEEEECT-TSCEEEEEEEECCCTTS---------CSEEEEEEEEEETTTTEECSCCE
T ss_pred CCCCCCccc----cEEcCCCcCCCceEECC-CCCEEEEEEecccccCC---------CCCCCEEEEEECCccCCCCCCcE
Confidence 3345654 22 24689999875 5666665 433211000 0013466665 566542211112
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC---C----CC--
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR---P----HG-- 278 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~---p----~g-- 278 (466)
.+.... ....+++|.|++ ++|+|||+++....+ ...+++||+|++|.|||+...... . .+
T Consensus 175 ~i~~~~--------~~~~~EgP~i~k--~~G~YYL~~s~gg~~-~~~~v~~~rs~s~~GP~~~~~~~pil~~~~~~~~~~ 243 (533)
T 1yif_A 175 VIFEGT--------DRKLTEAPHLYH--IGNYYYLLTAEGGTR-YEHAATIARSANIEGPYEVHPDNPILTSWHDPGNPL 243 (533)
T ss_dssp EEECCC--------TTCCCEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEESSTTCCCEECTTCCSEECTTCTTSSS
T ss_pred EEEcCC--------CCCccccceEEE--ECCEEEEEEeCCCCC-CCeEEEEEEECCCCceeeeCCCCceEecCCCCCCce
Confidence 111110 134689999996 899999999975332 246899999999999999863211 0 11
Q ss_pred CCccCceEEEcCCCcEEEEEEe
Q 012300 279 FDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 279 ~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
...-.+++|+++||+.||+|..
T Consensus 244 ~~~GH~~~v~~~~G~w~~~~~~ 265 (533)
T 1yif_A 244 QKCGHASIVQTHTDEWYLAHLT 265 (533)
T ss_dssp EEEEEEEEEECTTSCEEEEEEE
T ss_pred EcCCCCeEEECCCCCEEEEEEE
Confidence 1233578898889999999975
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=124.93 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=121.2
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCccc--ccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAA--KRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
+.+..|+||++||..+.+|+.+. . ..+. ...+..|||.|... +-.+.+.|+.. ...........+++.
T Consensus 37 i~i~~S~DLv~W~~~g~~l~~~~-~--~~~~~~~~~~~~WAP~i~~~---~g~~yly~t~~----~~~~g~~~~~~~~va 106 (538)
T 3c2u_A 37 VQIHHSKDLVHWHLVAHPLSTTE-F--LDMKGNPDSGGIWAPDLSYA---DGKFWLIYTDV----KVVDGMWKDCHNYLT 106 (538)
T ss_dssp CEEEEESSSSSCEEEECSBCSTT-T--CCCTTCCTTCEECSCEEEEE---TTEEEEEEEEE----CCCSSSCCCEEEEEE
T ss_pred eEEEECCCCCCcEECccccCCcc-c--ccccCCCCCCCEECCeEEEE---CCEEEEEEEec----cCCCCCcccccEEEE
Confidence 34567899999999999887651 0 0111 12457899998886 77775555511 110000001122222
Q ss_pred ----cCceeeCCCCCeEE----eeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEe
Q 012300 136 ----PGRIWLDTEGAPIQ----AHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNE 205 (466)
Q Consensus 136 ----pg~~w~dt~GnpI~----ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~ 205 (466)
|..+|.+ |+. +.|++++.++ +|+.||+ +++...... ....+|.+.+ +.|+ ++..
T Consensus 107 ~s~~p~Gpw~~----p~~~~~~~iDp~~f~Dd-dG~~Yl~~~~~~~~~~~---------~~~~~i~~~~l~~d~--~~~~ 170 (538)
T 3c2u_A 107 TAEDIKGPWSK----PILLNGAGFDASLFHDP-SGKKYLVNMYWDQRVYH---------HNFYGIALQEYSVAE--EKLI 170 (538)
T ss_dssp EESSTTCCCCC----CEEEECSCSCCEEEECT-TSCEEEEEEEECCCTTS---------CSEEEEEEEEEETTT--TEEC
T ss_pred EECCCCCCccc----cEecCCCcCCCeeEECC-CCCEEEEEEecCCccCC---------CCCCCEEEEEECCcc--CCCC
Confidence 4455654 332 3699998875 5666665 443221000 0013466655 4554 3433
Q ss_pred ce--eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCCC----
Q 012300 206 GI--VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPH---- 277 (466)
Q Consensus 206 g~--vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~---- 277 (466)
+. .+.... ....+++|.|++ ++|+|||+++....+ ...+++||+|++|.|||+.... ....
T Consensus 171 g~~~~i~~~~--------~~~~~EgP~i~k--~~G~YYL~~s~gg~~-~~~~~~~~rS~s~~GP~~~~~~~pil~~~~~~ 239 (538)
T 3c2u_A 171 GKPEIIYKGT--------DIAYTEGPHLYY--INDMYYLMTAEGGTT-YQHSETIARSKTIHGPYEIQPDYPLLSAWKEV 239 (538)
T ss_dssp SCCEEEECCC--------TTCCCEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEESSTTCCCEECTTCCSBCCTTCT
T ss_pred CCCEEEecCC--------CCCccccceEEE--ECCEEEEEEecCCCC-CCeEEEEEEECCCCCCCccCCCCceEecCCCC
Confidence 32 111111 134689999996 899999999975433 2468999999999999998642 1111
Q ss_pred -C--CCccCceEEEcCCCcEEEEEEe
Q 012300 278 -G--FDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 278 -g--~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
+ ...-..++|+++||+.||+|..
T Consensus 240 ~~~~~~~GH~~~v~~~~G~w~~~~~~ 265 (538)
T 3c2u_A 240 HNPLQKCGHASLVETQNGQWYLAHLT 265 (538)
T ss_dssp TCSSEEEEEEEEEECTTSCEEEEEEE
T ss_pred CCceEcCCCCeEEECCCCCEEEEEEE
Confidence 0 1234578898889999999985
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=123.29 Aligned_cols=208 Identities=13% Similarity=0.104 Sum_probs=122.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
+.+..|+||++||..+.+|+.+. ...-...+..+..|||.|... +-.+.+.|+.. ...........+++.
T Consensus 38 i~i~~S~DLv~W~~~g~~l~~~~-~~~~~~~~~~~~~WAP~i~~~---~g~~ylyyt~~----~~~~g~~~~~~~~va~s 109 (535)
T 2exh_A 38 VRIYHSKDLKNWRLVARPLNRLS-QLNMIGNPDSGGVWAPHLSYS---DGKFWLIYTDV----KVVEGQWKDGHNYLVTC 109 (535)
T ss_dssp CEEEEESSSSSCEEEECCBCSTT-TCCCTTCCTTCBBCSCEEEEE---TTEEEEEEEEE----CCCSSSCCCEEEEEEEE
T ss_pred eEEEECCCCCCcEECccccCCcc-cccccCCCCCCCEECCeEEEE---CCEEEEEEEec----cCCCCCccccceEEEEe
Confidence 45678899999999999887651 000011112457999998886 77775555511 111000001112222
Q ss_pred --cCceeeCCCCCeEE----eeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece
Q 012300 136 --PGRIWLDTEGAPIQ----AHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI 207 (466)
Q Consensus 136 --pg~~w~dt~GnpI~----ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~ 207 (466)
|..+|.+ |+. +.||+++.++ +|+.||+ +++...... ....+|.+.+ +.|+ |+..+.
T Consensus 110 ~~~~Gpw~~----p~~~~~~~iDp~vf~Dd-dG~~Yl~~~~~~~~~~~---------~~~~~i~~~~l~~d~--~~~~g~ 173 (535)
T 2exh_A 110 DTIDGAWSD----PIYLNSSGFDPSLFHDE-DGRKYLVNMYWDHRVDH---------HPFYGIVLQEYSVEQ--KKLVGE 173 (535)
T ss_dssp SSTTSCCCC----CEECCCSCSCCEEEECT-TSCEEEEEEEECCCTTS---------CSEEEEEEEEEETTT--TEEEEE
T ss_pred CCCCCCccc----cEecCCCcCCCceEECC-CCCEEEEEEecCCccCC---------CCCCcEEEEEECCcc--CCCCCC
Confidence 4445654 222 4699999875 5676665 433221000 0013466666 5565 454432
Q ss_pred --eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc--C-----CCC
Q 012300 208 --VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--R-----PHG 278 (466)
Q Consensus 208 --vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--~-----p~g 278 (466)
.+.... ....+++|.|++ ++|+|||+++....+. ..+++||+|++|.|||+..... . +.+
T Consensus 174 ~~~i~~~~--------~~~~~EgP~i~k--~~G~YYL~~s~ggt~~-~~~~~~~rs~s~~GP~~~~~~~pil~~~~~~~~ 242 (535)
T 2exh_A 174 PKIIFKGT--------DLRITEGPHLYK--INGYYYLLTAEGGTRY-NHAATIARSTSLYGPYEVHPDNPLLTSWPYPRN 242 (535)
T ss_dssp EEEEECCC--------TTCCCEEEEEEE--ETTEEEEEEEESCSST-TCEEEEEEESSTTCCCEECTTCCSEESTTCTTC
T ss_pred cEEEEcCC--------CCCccccceEEE--ECCEEEEEEeCCCCCC-CeEEEEEEeCCCCCCCccCCCcceEecCCCCCC
Confidence 221111 134689999996 8999999999754332 4689999999999999986421 0 011
Q ss_pred --CCccCceEEEcCCCcEEEEEEe
Q 012300 279 --FDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 279 --~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
...-..++|+++||+.||+|..
T Consensus 243 ~~~~~GH~~~v~~~~G~w~~~~~~ 266 (535)
T 2exh_A 243 PLQKAGHASIVHTHTDEWFLVHLT 266 (535)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEE
T ss_pred ceEcCCCCeEEECCCCCEEEEEEE
Confidence 1233578898889999999985
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=111.60 Aligned_cols=241 Identities=12% Similarity=0.121 Sum_probs=140.6
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec-eeccCCCcccccccCCCCeeeece
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG-IVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g-~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
.+++++. +|+||||-+...... ...+ .....+.++.|+|+++|+... .+|........ .......++.|.
T Consensus 55 np~ai~~--dGky~LfY~~~~~~~-~~~~-----~~~~~ig~A~S~DGi~w~~~~~Pvl~P~~~~~~-~~e~~~gv~DP~ 125 (364)
T 3qc2_A 55 NPAATLY--NGEIVVLYRAEDKSG-VGIG-----HRTSRLGYATSTDGTHFQREKTPVFYPDNDSQK-ELEWPGGCEDPR 125 (364)
T ss_dssp EEEEEEE--TTEEEEEEEEECSSS-SSTT-----CSCEEEEEEEESSSSSCEECSSCSBCCCSSTTH-HHHTTTEEEEEE
T ss_pred CceEEEE--CCEEEEEEEEECCCC-cccC-----CCceEEEEEEeCCCceeeEcCcCeEcCCCcccc-ccccCCcEECCE
Confidence 3566654 599999988543110 0000 012458889999999999843 45543321100 000015789999
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCC-------CCCccCceEE---------Ec-CCCc
Q 012300 231 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPH-------GFDSRDMTIF---------KD-DDGV 293 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~-------g~~~iDp~vF---------~D-dDG~ 293 (466)
|++. .+|+|||+|++.+. ...+|++|+|++. ..|+..+...+. .....|+++| .. .+|+
T Consensus 126 v~~~-edG~yym~Yta~~~--~~~~i~lA~S~Dl-~~W~k~g~i~~p~~~g~f~~~~~kd~~i~~~~r~~~lfp~ki~Gk 201 (364)
T 3qc2_A 126 IAVT-DDGLYVMMYTQWNR--HVPRLAVATSRNL-KDWTKHGPAFAKAFDGKFFNLGCKSGSILTEVVKGKQVIKKVNGK 201 (364)
T ss_dssp EEEC-TTSCEEEEEEEECS--SCEEEEEEEESSS-SSCEEEEETTSSHHHHTTTTCCCCCEEEEEEEETTEEEECEETTE
T ss_pred EEEe-CCCEEEEEEEecCC--CCeEEEEEEECCC-CEEEEeeeccCccccccccccccccceeeeeccccceeeEEECCE
Confidence 9972 48999999998643 3578999999994 578876543221 1234666665 22 3899
Q ss_pred EEEEEEecCCCcEEEEEcCCCCCCcc------ccEEEeec-------Cceee-eeEEEEECCEEEEEEeCCCC----C--
Q 012300 294 AYLVYSSEDNSELHIGPLTSDYLDVS------NVVRRILV-------GQHRE-APALFKHLGTYYMVTSGCTG----W-- 353 (466)
Q Consensus 294 ~YL~~g~~~n~~i~i~~Ls~D~~~~~------g~~~~i~~-------g~~~E-gP~ifK~~G~YYL~yS~~tg----~-- 353 (466)
+||+++ ...|.++. |+|+..+. +....++. ...+| ||..++.+.-++|+|-+... +
T Consensus 202 Y~M~~g---~~~I~la~-S~Dl~~W~~~~~~~g~~~~~~~~~~~~wds~~ig~gp~pI~t~~GwLl~YhGv~~~~~~~~~ 277 (364)
T 3qc2_A 202 YFMYWG---EEHVFAAT-SDDLIHWTPIVNIDGSLKKLFSPRDGYFDSHLTECGPPAIYTPKGIVLLYNGKNHSGRGDKR 277 (364)
T ss_dssp EEEEEC---SSSBEEEE-ESSSSSEEECBCTTSCBCCSBCCCTTSSSSSEEEECSCEEEETTEEEEEEEEECCTTTSCTT
T ss_pred EEEEEc---CCeEEEEe-CCCcccceEccccCCCeeeeccCCCChHhhcccccCCCcEEcCCCEEEEEeccccccccccc
Confidence 999986 35788875 78888874 22222221 13454 68889998778999974221 1
Q ss_pred --CCCcEEEEEeCCCCCCce---eCCCccccCCccceeec-cCCCc---eEEEcccCCcccEEEEEe
Q 012300 354 --APNEALVHAAESIMGPWE---DMGNPCIGGNKVFRLTT-FFAQS---TYVIPLAGLPGLYIFMAD 411 (466)
Q Consensus 354 --~~n~~v~~~Sds~~GPw~---~~gnPi~~~~~~~~~~t-~~sq~---~~v~~~~G~~~~yi~~~d 411 (466)
...|.+++.--++.-|.+ ...+|++.........+ |..+- +..+..+| +++|||+-
T Consensus 278 ~~~~~Y~~g~~llD~~dP~kvi~r~~~p~l~P~~~~E~~G~yv~nVvF~~G~~~~~~--~~~iyYG~ 342 (364)
T 3qc2_A 278 YTANVYAAGQALFDANDPTRFITRLDEPFFRPMDSFEKSGQYVDGTVFIEGMVYFKN--KWYLYYGC 342 (364)
T ss_dssp SCTTCEEEEEEEECSSCTTCEEEECSSCSBCCCSGGGCCSSSTTCCEEEEEEEEETT--EEEEEEEE
T ss_pred ccCceEEEEEEEEcCCCCceeEEcCCCceEcCCCccccCCCCcCCEEEeCCcEeeCC--EEEEEEec
Confidence 124666654333444443 23567776542111222 13332 12223344 68899983
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=119.46 Aligned_cols=192 Identities=15% Similarity=0.189 Sum_probs=121.2
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCC-----CCcceEEEEEeCCCCCCceecc-c-cCCC-C--------CCccCce
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLY-S-KRPH-G--------FDSRDMT 285 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~-~-~~p~-g--------~~~iDp~ 285 (466)
+...+|.|++++ .+|+|+|||++.... ...+.+++|+|++. ..|+... . ..|. . ....||.
T Consensus 46 D~~gv~sgsai~--~dG~y~lfYtg~~~~~~~~~~~~~~ig~A~S~Dg-i~w~~~~~pvl~p~~~~~~~~~~~~~~~DP~ 122 (356)
T 3taw_A 46 EESDTFNPAATI--YDGKIVVMYRAEDNSAQGIGSRTSRLGYATSTDG-IHFERDTKPAFYPAKDNQAENECPGGTEDPR 122 (356)
T ss_dssp TSSEEEEEEEEE--ETTEEEEEEEEECSSSCSTTSSCEEECCEEESSS-SSCEECSSCSBCCCSSTTHHHHTTTEEEEEE
T ss_pred ccCCeECcEEEE--ECCEEEEEEEEEcCCCccCCCceeEEEEEEeCCC-ccceECCcceecCCCccccccccCCceECCE
Confidence 567899999997 899999999987542 13578999999985 3798732 1 1122 1 2456999
Q ss_pred EEEcCCCcEEEEEEecCC--CcEEEEEcCCCCCCccccEEEee-------------------cCceeeeeEEEEECCEEE
Q 012300 286 IFKDDDGVAYLVYSSEDN--SELHIGPLTSDYLDVSNVVRRIL-------------------VGQHREAPALFKHLGTYY 344 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~~n--~~i~i~~Ls~D~~~~~g~~~~i~-------------------~g~~~EgP~ifK~~G~YY 344 (466)
|++++||++||+|.+..+ ..+.+++ |+|+.+++-.. .++ +....+.|.|.|+||+||
T Consensus 123 v~~~~dg~y~m~yt~~~~~~~~i~la~-S~Dl~~W~~~g-~i~~~~~~~~~~~~~~k~~~l~p~~~~g~p~v~k~~G~y~ 200 (356)
T 3taw_A 123 IAMTEDGTYVLLYTQWNRKVPRLAVAT-SKDLKHWTKFG-PAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVNGKYF 200 (356)
T ss_dssp EEECTTSCEEEEEEEECSSCEEEEEEE-ESSSSSCEEEE-ETTSSHHHHTTTTSCCCCEEEEEEEETTEEEECCBTTBEE
T ss_pred EEEECCCEEEEEEEEeCCCCceEEEEE-CCCCCCceEee-eEcCCccccccccccCCccEEeecccCCCceEEEECCEEE
Confidence 999878999999998542 2344444 67887765211 111 111345688999999999
Q ss_pred EEEeCCCCCCCCcEEEEEeCCCCCCceeC------CCccccCCccceeeccCCCc----eEEEcccCCcccEEEEEeEeC
Q 012300 345 MVTSGCTGWAPNEALVHAAESIMGPWEDM------GNPCIGGNKVFRLTTFFAQS----TYVIPLAGLPGLYIFMADRWN 414 (466)
Q Consensus 345 L~yS~~tg~~~n~~v~~~Sds~~GPw~~~------gnPi~~~~~~~~~~t~~sq~----~~v~~~~G~~~~yi~~~d~w~ 414 (466)
|+|.. .....++|+++. +|+.. .++++.... ..+.++- ..+++.+. +|+++||-.-.
T Consensus 201 m~~g~------~~I~la~S~Dl~-~W~~~~~~~~~~~~~l~~~~----~~wd~~~ig~gp~pI~t~~--Gwll~YhGv~~ 267 (356)
T 3taw_A 201 MYWGE------KNVYAATSDNLI-DWDPLLDENGELLKLFSPRS----GYFDSQLTECGPPAILTKD--GIVLLYNGKNE 267 (356)
T ss_dssp EEECS------SSBEEEEESSSS-SCEECBCTTSSBCCSBCCCT----TSSCSSEEEECSCEEEETT--EEEEEEEEECC
T ss_pred EEeCC------ceeeEEECCCcc-cCeeccccCCCcceEecCCC----ChheeccccCCCccEEECC--cEEEEEecccc
Confidence 99952 123345899988 99985 566665421 1121111 12344333 79888885432
Q ss_pred C-----CCCCCCeeEEEEEEEc
Q 012300 415 P-----ADLRESRYIWLPLIVR 431 (466)
Q Consensus 415 ~-----~~~~~~R~v~lPl~~~ 431 (466)
. ......+|..--+.+|
T Consensus 268 ~~~~~~~~~~~~~Y~~g~~lld 289 (356)
T 3taw_A 268 PGEKGDTAYPANSYCAGQALFD 289 (356)
T ss_dssp SGGGSCTTSCTTCEEEEEEEEC
T ss_pred ccccccccccCceEEEEEEEEc
Confidence 2 1123467755444444
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=121.86 Aligned_cols=218 Identities=13% Similarity=0.142 Sum_probs=122.2
Q ss_pred CccccchhhhhhccccCCCCCCCCC----------CcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCC
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRS----------PRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGN 129 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~----------p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~ 129 (466)
...|+||++||..+.+++.+. ... +.|+. .+..|||.|-.+ .+-.+.+.|+..... .... ...
T Consensus 57 i~~S~DLvnW~~~g~~l~~~~-~~~~~~~~~l~~~~~w~~-~~~~WAP~vi~~--~dGkyylyys~~~~~--~~~~-~Ig 129 (470)
T 2x8s_A 57 SAKSNDLMQWQQLTTSVSNDN-PLIPNVYEELKETFEWAQ-SDTLWAADVTQL--ADGKYYMYYNACRGD--SPRS-AMG 129 (470)
T ss_dssp EEEESSSSBCEEEECSCSTTC-TTSTTHHHHTHHHHHHHT-CSSCCCCEEEEC--TTSCEEEEEEEECSS--SCCE-EEE
T ss_pred eEECCCcccceeccccccccc-cccccccccccccccccC-CCceECCeEEEe--cCCEEEEEEEeccCC--CCcc-EEE
Confidence 467899999999998887542 111 13554 357999998765 255665555421100 0000 000
Q ss_pred CceeeecCceeeCCCCCeE--------------------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccC
Q 012300 130 DSFYYYPGRIWLDTEGAPI--------------------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDII 189 (466)
Q Consensus 130 ~~~~i~pg~~w~dt~GnpI--------------------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~ 189 (466)
-+..-.|..+|.+. |.++ .+.||+++.|+ +|++||+-.... .
T Consensus 130 vatSddp~GPw~~~-g~~l~~~~~~~~~dg~~~~~~~~~~~IDp~vf~Dd-DG~~Yl~~g~~~----------------~ 191 (470)
T 2x8s_A 130 VAVADNIEGPYKNK-GIFLKSGMEGTSSDGTPYDATKHPNVVAPHTFFDK-DGKLWMVYGSYS----------------G 191 (470)
T ss_dssp EEEESSTTCCCEEE-EEEEEECCSSBCTTSSBCCTTTSCCSCCCEEEECT-TSCEEEEECBST----------------T
T ss_pred EEEeCCCCCCceeC-CeeeccCcccccccccccccccCCCCCCCCEEEcC-CCCEEEEeeecC----------------C
Confidence 00111133344432 1111 24689998875 688888743211 2
Q ss_pred cEEEEEeC-CCC---CCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-CCcceEEEEEeCCC
Q 012300 190 GVGCYSSK-DMW---TWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-YTKAAVGVAISDYP 264 (466)
Q Consensus 190 gi~v~sS~-DLv---~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~-~~~~~IGVA~SdsP 264 (466)
+|.+.+.+ |.. .+...+..+.. .....+++|.|++++++|+|||+|+..... ....+|+||+|++|
T Consensus 192 gI~~~eL~~d~~~~~~~~~~~~~i~~---------g~~~~~EGP~i~~~K~~G~YYL~~S~g~~~~~~~y~v~~arS~s~ 262 (470)
T 2x8s_A 192 GIFILEMNPKTGFPLPGQGYGKKLLG---------GNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGGYNIRVARSKKP 262 (470)
T ss_dssp CEEEEEBCTTTSSBCTTCTTCEEEEC---------CSSCSEEEEEEEEETTTTEEEEEEEESBSSTTSBCEEEEEEESST
T ss_pred cEEEEEECCccCcCcCCcccceEecC---------CCCCceeccEEEEEccCCEEEEEEEeCCCCCCCCceEEEEEECCC
Confidence 35555533 321 11111111110 012468999999867899999999975432 13568999999999
Q ss_pred CCCceec-ccc-CC-CC----------------------------------CCccCceEEEcC-CCcEEEEEEecC----
Q 012300 265 TGPFDYL-YSK-RP-HG----------------------------------FDSRDMTIFKDD-DGVAYLVYSSED---- 302 (466)
Q Consensus 265 ~GPf~~~-~~~-~p-~g----------------------------------~~~iDp~vF~Dd-DG~~YL~~g~~~---- 302 (466)
.|||++. +.. .. .+ ...-..++|+|+ +|+.||+|....
T Consensus 263 ~GP~~~~~g~pl~~~~~~~~~~~~~~~~~~~G~~l~g~~~f~~~~~~~~~~~g~GH~s~~~~~~~G~w~~vyH~~~~~~g 342 (470)
T 2x8s_A 263 DGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNSAYYDEKTGRSYLIFHTRFPGRG 342 (470)
T ss_dssp TCCCBCTTCCBGGGCCCCTTCSSCHHHHTTSSEEEECSEECCBTTBCCCEEEEEEEEEEEECTTTCCEEEEEEEECTTST
T ss_pred CCCCCcCCCCcccccCCcccccccccccccccceecccccccccccccCceEcCCCCeEEEeCCCCeEEEEEeeccCCCC
Confidence 9999953 211 00 00 012357789885 799999998742
Q ss_pred -CCcEEEEEc
Q 012300 303 -NSELHIGPL 311 (466)
Q Consensus 303 -n~~i~i~~L 311 (466)
...+.+.+|
T Consensus 343 ~~r~~~v~~l 352 (470)
T 2x8s_A 343 EEHEVRVHQL 352 (470)
T ss_dssp TCCEEEEEEE
T ss_pred CcceEEEEEE
Confidence 124556655
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-10 Score=121.11 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=122.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
+.+..|+||++||..+.+|+++. ...-......+..|||.|-.. +-.+.+.|+.. ...........+++.
T Consensus 39 i~i~~S~DLv~W~~~g~~l~~~~-~~~~~~~~~~~~~wAP~i~~~---~g~~yl~yt~~----~~~~g~~~~~~~~va~s 110 (528)
T 1yrz_A 39 VRIHHSRDLKHWRFVSSPLTRTS-QLDMKGNMNSGGIWAPCLSYH---DGTFYLIYTDV----KQWHGAFKDAHNYLVTA 110 (528)
T ss_dssp CEEEEESSSSSCEEEECSBCSTT-TCCCTTCCTTCEECSCEEEEE---TTEEEEEEEEE----EECSSSCCEEEEEEEEE
T ss_pred eEEEECCCccCceECccccCCcc-cccccCCCCCCCEECCeEEEE---CCEEEEEEecc----cCCCCCcccceEEEEEe
Confidence 34677899999999999997651 000000112357899998876 77775555511 000000000012221
Q ss_pred --cCceeeCCCCCeE----EeeCCceEEECCCCEEEEEEE-eCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece
Q 012300 136 --PGRIWLDTEGAPI----QAHGGGILYDERSRTYFWYGE-YKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI 207 (466)
Q Consensus 136 --pg~~w~dt~GnpI----~ahd~~Ii~~~~~g~YYlygT-~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~ 207 (466)
|..+|.+ |+ .+.||+++.|+ +|++||+.. +...... ....+|.+.+ +.|+ ++..+.
T Consensus 111 ~~p~Gpw~~----p~~~~~~~iDp~vf~D~-dG~~Yl~~~~~~~~~~~---------~~~~~i~~~~l~~d~--~~~~g~ 174 (528)
T 1yrz_A 111 QNIEGPWSD----PIYLNSSGFDPSLFHDD-DGRKWLVNMIWDYRKGN---------HPFAGIILQEYSEAE--QKLVGP 174 (528)
T ss_dssp SSSSSCCCC----CEECCCSCSCCEEEECT-TSCEEEEEEEECCCTTS---------CSEEEEEEEEEETTT--TEEEEE
T ss_pred CCCCCCccc----cEECCCCcCCCceEECC-CCCEEEEEeeccCCCCC---------CCCCeEEEEEECCcc--CCCCCC
Confidence 4455654 22 24699998874 678888743 2111000 0012466666 5564 343332
Q ss_pred --eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cC-----CCC
Q 012300 208 --VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KR-----PHG 278 (466)
Q Consensus 208 --vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~-----p~g 278 (466)
.+.... ....+++|.|++ ++|+|||+++....+ ...+++||+|++|.|||+.... .. +.+
T Consensus 175 ~~~i~~~~--------~~~~~EgP~i~k--~~G~YYL~~s~~g~~-~~~~~~~~rs~~~~GP~~~~~~~pil~~~~~~~~ 243 (528)
T 1yrz_A 175 VKNIYKGT--------DIQLTEGPHLYK--KDGYYYLLVAEGGTE-YEHAATLARSQSIDGPYETDPSYPLVTSTGQPEL 243 (528)
T ss_dssp EEEEECCC--------TTCCCEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEESSTTCCCEECTTCCSEECTTCTTC
T ss_pred CEEEEcCC--------CCCccCCCEEEE--ECCEEEEEEeCCCCC-CCcEEEEEEECCCCCCCCcCCCCeEEEecCCCCC
Confidence 221110 234689999996 899999999975433 2468999999999999998631 11 000
Q ss_pred --CCccCceEEEcCCCcEEEEEEe
Q 012300 279 --FDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 279 --~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
...-..++|.++||+.||+|..
T Consensus 244 ~~~~~GH~~~v~~~~G~~~~~~~~ 267 (528)
T 1yrz_A 244 ALQKAGHGSLVETQNGEWYLAHLC 267 (528)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEE
T ss_pred ceEcCCcCeEEECCCCCEEEEEEE
Confidence 1233578898889999999975
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=115.72 Aligned_cols=210 Identities=12% Similarity=0.061 Sum_probs=121.0
Q ss_pred ecCccccchhhhhhccccCC-CCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee--
Q 012300 58 SHNPSFRELVEVEEENIQIP-PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-- 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i-- 134 (466)
+.+..|+||++|+..+..+. .+ ...+ +..+..|||.|-.. +-.+.+.|+.. +. ....+..+++
T Consensus 44 i~i~~S~DLv~W~~~~~~~~w~~--~~~~---~~~~~~WAP~v~~~---~Gkyylyys~~-----~~-~~~~~~~i~va~ 109 (468)
T 3akh_A 44 IVLRRATTLQGLATAPETTIWTK--HASG---VMGAHIWAPEIHFI---DGKWYVYFAAG-----ST-SDVWAIRMYVLE 109 (468)
T ss_dssp EEEEEESSTGGGGGCCCEEEEEC--CSSS---TTCEEEEEEEEEEE---TTEEEEEEEEE-----CS-SCTTCCEEEEEE
T ss_pred EEEEECCCccccccCCCcceecC--CCCC---CCCCCEecceEEEE---CCEEEEEEEeE-----CC-CCCCceeEEEEE
Confidence 34567899999999874321 11 0011 12447899998877 66775555521 11 0011222332
Q ss_pred ----ec-CceeeCCCCCe-----EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEE
Q 012300 135 ----YP-GRIWLDTEGAP-----IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 204 (466)
Q Consensus 135 ----~p-g~~w~dt~Gnp-----I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~ 204 (466)
.| ..+|.+. |.+ -.+.|++++. ++|++||+-....... ....+|.+.+.+|+ |+.
T Consensus 110 ~~s~dp~~Gpw~~~-g~~~~~~~~~~IDp~vf~--ddG~~Yl~~g~~~~~~----------~~~~~i~i~~l~~~--~~~ 174 (468)
T 3akh_A 110 SGAANPLTGSWTEK-GQIATPVSSFSLDATTFV--VNGVRHLAWAQRNPAE----------DNNTSLFIAKMANP--WTI 174 (468)
T ss_dssp ECCSCTTTSCCEEE-EECCCSSCSCEEEEEEEE--ETTEEEEEEEECCTTS----------SSSBEEEEEEEEET--TEE
T ss_pred ccCCCCCCCCCccc-ceeecCCCCCcCcCeEEE--ECCEEEEEEEccCCCC----------CCCCcEEEEEeCCC--cee
Confidence 23 3456541 211 1246788877 3688888743221100 01235677777664 655
Q ss_pred ece--eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeC---CCCCC--ceeccc-cCC
Q 012300 205 EGI--VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISD---YPTGP--FDYLYS-KRP 276 (466)
Q Consensus 205 ~g~--vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sd---sP~GP--f~~~~~-~~p 276 (466)
.+. .+...+..|.. .....+++|.|++ ++|+|||+|+....+ ...+|+||+|+ +|.|| |+..+. ...
T Consensus 175 ~g~~~~i~~~~~~we~--~g~~~~EGP~i~k--~~G~YYL~ys~~g~~-~~y~v~~a~s~~~~~~~gP~~w~~~~~pvl~ 249 (468)
T 3akh_A 175 SGTPTEISQPTLSWET--VGYKVNEGPAVIQ--HGGKVFLTYSASATD-ANYCLGMLSASASADLLNAASWTKSSQPVFK 249 (468)
T ss_dssp EEEEEEEECCCSGGGC--SSSCBEEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEEETTSCTTSGGGCEECSSCSBC
T ss_pred cCccEEecCCCccccc--CCCccccCCEEEE--ECCEEEEEEEeCCCC-CCceEEEEEECCCCCCCCcHHhccCCceEEE
Confidence 442 33333333321 1235689999997 899999999975422 35689999998 79997 876431 111
Q ss_pred -C---CC-CccCceEEEcCCCc-EEEEEEec
Q 012300 277 -H---GF-DSRDMTIFKDDDGV-AYLVYSSE 301 (466)
Q Consensus 277 -~---g~-~~iDp~vF~DdDG~-~YL~~g~~ 301 (466)
. +. .....+||+++||+ .||+|...
T Consensus 250 ~~~~~~~~g~GH~svv~~~~G~~~~~vyH~~ 280 (468)
T 3akh_A 250 TSEATGQYGPGHNSFTVSEDGKSDILVYHDR 280 (468)
T ss_dssp CBTTTTBEEEEEEEEEECTTSCSEEEEEEEE
T ss_pred eCCCCceEeCCCceEEECCCCCEEEEEEecc
Confidence 1 11 23456789888995 99999864
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=116.48 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=120.8
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCC---ccCCCceee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMK---DNGNDSFYY 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~---~~~~~~~~i 134 (466)
+.+..|+||++||.++.+|+.+ ..+.|.. +..|||.|-... .+..+.+.|+ +.+.+. ....-+..-
T Consensus 86 i~v~~S~DLv~W~~~g~~l~~~---~~~~~~~--~~~WAP~v~~~~-~~Gkyymy~~-----~~~~~~~~~~~igvats~ 154 (526)
T 3vsf_A 86 VSCYRSKDLVNWEYRGEVLSRN---SAPELNH--CNIERPKVMYNA-STGEFVMWMH-----WENGINYGQARAAVAYSK 154 (526)
T ss_dssp EEEEEESSSSSCEEEEEEEETT---SSGGGSS--CEEEEEEEEECT-TTCCEEEEEE-----EECSSCSCCCEEEEEEES
T ss_pred EEEEECCCCCCcCCCCccCCCC---CCcCccc--CceECCEEEEEC-CCCEEEEEEE-----eeCCCCCCcceEEEEEcC
Confidence 4677899999999999998764 2356653 359999987652 2556644444 111111 111111111
Q ss_pred ecCceeeCCC-CCe-------------EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCC
Q 012300 135 YPGRIWLDTE-GAP-------------IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDM 199 (466)
Q Consensus 135 ~pg~~w~dt~-Gnp-------------I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DL 199 (466)
.|..+|.+.. -.| ..+.|+.++.++ +|++||+-.... ..++.+.+ +.|+
T Consensus 155 ~p~Gpw~~~g~~~p~~~~g~~~~~~~~~~~iDp~vf~D~-dG~~Yl~~~~~~---------------~~~i~i~~l~~d~ 218 (526)
T 3vsf_A 155 TPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDT-DGKGYFISAANE---------------NMDLHLYELTPDY 218 (526)
T ss_dssp SSSSCCEEEEEECSSCTTCCEETTEESCCCCSEEEEECT-TSCEEEEEEETT---------------TTEEEEEEECTTS
T ss_pred CCCCCCEeccccccccccccccCCCCCcccccccEEECC-CCCEEEEEEecC---------------CCceEEEEcCCCc
Confidence 2445565310 011 235688888875 567776643211 11344444 5677
Q ss_pred CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-CCC
Q 012300 200 WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-PHG 278 (466)
Q Consensus 200 v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-p~g 278 (466)
..+......+- .+..+++|.|++ ++|+|||+|+.. ..+....++||+|++|+|||+..+... ...
T Consensus 219 ~~~~~~~~~~~-----------~g~~~EgP~i~k--~~G~YYL~~S~~-tg~~~~~~~~a~S~s~~GPw~~~~~~~~~~~ 284 (526)
T 3vsf_A 219 KNIASLKAKLF-----------VGQQREAPCLIK--RNGYYYLITSGC-TGWNPNQAKYAYSKDLASGWSQLYNLGNSTT 284 (526)
T ss_dssp SSEEEEEEEES-----------TTSCCEEEEEEE--SSSCEEEEEECC-CTTSCCCEEECEESCSSSCCCCCEEESSTTT
T ss_pred ccccCceEEeC-----------CCCCcCCeEEEE--ECCEEEEEEcCC-CCcCCCceEEEEeCCCCCCceeCCccCCCCc
Confidence 76655432211 235689999996 899999999842 223345899999999999999765322 223
Q ss_pred CCccCceEEEcC--CCcEEEEEEe
Q 012300 279 FDSRDMTIFKDD--DGVAYLVYSS 300 (466)
Q Consensus 279 ~~~iDp~vF~Dd--DG~~YL~~g~ 300 (466)
+.+....||..+ +++.||+.+.
T Consensus 285 ~~~q~~~v~~~~g~~~~~~~~~~d 308 (526)
T 3vsf_A 285 YRSQPTFIIPVQGSSGTSYLYMGD 308 (526)
T ss_dssp TTCEEEEEEEEECSSCEEEEEEEE
T ss_pred cCCCCeeEEEecCCCCceEEEEee
Confidence 567777887653 3335776665
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.2e-10 Score=118.67 Aligned_cols=207 Identities=14% Similarity=0.050 Sum_probs=118.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcc--c-----ccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRA--A-----KRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGND 130 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~--~-----~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~ 130 (466)
.....|+||++||..+.++|.+. ..+.+ . .-.+..|||.|... +.+-.+.+.|+ ++ ....-
T Consensus 42 ~~i~~S~DLvnW~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~~WAP~i~~~-~~~G~fYly~~------~~---~~~~v 109 (542)
T 3zxk_A 42 APVLKSYDLVHWTPVTHSVPRLN--FGSNYDLPSGTPGAYVKGIWASTLRYR-RSNDRFYWYGC------VE---GRTYL 109 (542)
T ss_dssp EEEEEESSSSSCEEEEEEESSCC--SCGGGGCCSSTTTTTTCSBCSCEEEEE-TTTTEEEEEEE------ET---TEEEE
T ss_pred eEEEEcCCCCCccccccccccCC--ccccccccCCcccccCCceECCcEEEE-CCCCEEEEEEE------CC---CcEEE
Confidence 34567999999999999987651 11111 0 11357999998876 11366655555 22 10000
Q ss_pred ceeeecCce------------eeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eC
Q 012300 131 SFYYYPGRI------------WLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SK 197 (466)
Q Consensus 131 ~~~i~pg~~------------w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~ 197 (466)
...-.|..+ |.+..--...+.||+++.|+ +|+.||+-.+ .+|.+.+ +.
T Consensus 110 ~~a~~p~GPf~~g~~l~~~~~ws~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~------------------~~i~~~eL~~ 170 (542)
T 3zxk_A 110 WTSPGGNALANNGEVPPSAWNWQHTATIDNCYYDAGLLIDD-DDTMYIAYGN------------------PTINVAQLSP 170 (542)
T ss_dssp EEEECTTGGGTTTCCCGGGCCCEEEEEESSCCTTCEEEECT-TSCEEEEECS------------------SSEEEEEECT
T ss_pred EEECCCCCCccccccccccCccccccccCCCCCCCcEEEcC-CCCEEEEEcC------------------CCEEEEEeCC
Confidence 111124444 54310000124699998875 6788887311 2354544 45
Q ss_pred CCCCCEEece-eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCCceecccc
Q 012300 198 DMWTWKNEGI-VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGPFDYLYSK 274 (466)
Q Consensus 198 DLv~W~~~g~-vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~GPf~~~~~~ 274 (466)
|+..-..... ++.. . .+..+++|.|++ ++|+|||+++... ..+.||.|++ |.|||+..+-.
T Consensus 171 d~~~~~~~~~~i~~~-~--------~g~~~EgP~i~k--~~G~YYL~~s~~~-----~~~~v~rs~s~s~~GPy~~~~vl 234 (542)
T 3zxk_A 171 DGTRQVRVQQRVYAH-P--------QGQTVEGARMYK--IRGNYYILVTRPA-----DAEYVLRSTTGSPFGPYEARTLV 234 (542)
T ss_dssp TSSSEEEEEEEEECC-T--------TCCCCEEEEEEE--ETTEEEEEEEETT-----TEEEEEEESSSSTTCCEEEEEEE
T ss_pred ccCcccCCcEEEEeC-C--------CCccccccEEEE--ECCEEEEEEEeCC-----CCEEEEEEcCCCCCCCceECCEe
Confidence 6654443333 3221 1 133689999996 8999999998642 2467788877 99999975421
Q ss_pred C----CC-CCC-ccCceEEEcCCCcEEEEEEecC---CCcEEEEEc
Q 012300 275 R----PH-GFD-SRDMTIFKDDDGVAYLVYSSED---NSELHIGPL 311 (466)
Q Consensus 275 ~----p~-g~~-~iDp~vF~DdDG~~YL~~g~~~---n~~i~i~~L 311 (466)
. +. +.. ....++|.++||+.|+++.... .....+.++
T Consensus 235 ~~~~~~v~~~G~~~hg~iv~~~~G~w~~~~~~~~~~~gR~~~l~~v 280 (542)
T 3zxk_A 235 SRIQGPLANAGFAHQGGIVDAPDGTWHYVAFMDAYPGGRIPVVAPL 280 (542)
T ss_dssp ESCCCSSSSSCCCEEEEEEECTTSCEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCcceeccCCCCCCEEEECCCCCEEEEEEccCCCCCceEEEEEe
Confidence 1 11 111 2235688888999987765421 123455555
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-08 Score=103.57 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=93.9
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCC-----CCcceEEEEEeCCCCCCceeccc--cCCCC---------CCccCce
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLYS--KRPHG---------FDSRDMT 285 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~~--~~p~g---------~~~iDp~ 285 (466)
+...++.|.+++ .+|+|+|||.+...+ ...++||+|+|++.. .|+.... ..|.. ....||.
T Consensus 49 D~~gvfnp~ai~--~dGky~LfY~~~~~~~~~~~~~~~~ig~A~S~DGi-~w~~~~~Pvl~P~~~~~~~~e~~~gv~DP~ 125 (364)
T 3qc2_A 49 ESNDTFNPAATL--YNGEIVVLYRAEDKSGVGIGHRTSRLGYATSTDGT-HFQREKTPVFYPDNDSQKELEWPGGCEDPR 125 (364)
T ss_dssp TSSEEEEEEEEE--ETTEEEEEEEEECSSSSSTTCSCEEEEEEEESSSS-SCEECSSCSBCCCSSTTHHHHTTTEEEEEE
T ss_pred ccCceECceEEE--ECCEEEEEEEEECCCCcccCCCceEEEEEEeCCCc-eeeEcCcCeEcCCCccccccccCCcEECCE
Confidence 567899999997 899999999987543 145899999999954 6887321 12322 2357999
Q ss_pred EEEcCCCcEEEEEEecCC--CcEEEEEcCCCCCCccccEEEeecC--------ceeeeeEEE-----------EECCEEE
Q 012300 286 IFKDDDGVAYLVYSSEDN--SELHIGPLTSDYLDVSNVVRRILVG--------QHREAPALF-----------KHLGTYY 344 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~~n--~~i~i~~Ls~D~~~~~g~~~~i~~g--------~~~EgP~if-----------K~~G~YY 344 (466)
|++++||++||+|.+... ..+.+++ |+|+.+++..- .++.. .....+.|| |.||+||
T Consensus 126 v~~~edG~yym~Yta~~~~~~~i~lA~-S~Dl~~W~k~g-~i~~p~~~g~f~~~~~kd~~i~~~~r~~~lfp~ki~GkY~ 203 (364)
T 3qc2_A 126 IAVTDDGLYVMMYTQWNRHVPRLAVAT-SRNLKDWTKHG-PAFAKAFDGKFFNLGCKSGSILTEVVKGKQVIKKVNGKYF 203 (364)
T ss_dssp EEECTTSCEEEEEEEECSSCEEEEEEE-ESSSSSCEEEE-ETTSSHHHHTTTTCCCCCEEEEEEEETTEEEECEETTEEE
T ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEE-ECCCCEEEEee-eccCccccccccccccccceeeeeccccceeeEEECCEEE
Confidence 999778999999998542 2344554 67888775321 22221 112344444 8899999
Q ss_pred EEEeCCCCCCCCcEEEEEeCCCCCCcee
Q 012300 345 MVTSGCTGWAPNEALVHAAESIMGPWED 372 (466)
Q Consensus 345 L~yS~~tg~~~n~~v~~~Sds~~GPw~~ 372 (466)
|++.. .....+.|+++. -|+.
T Consensus 204 M~~g~------~~I~la~S~Dl~-~W~~ 224 (364)
T 3qc2_A 204 MYWGE------EHVFAATSDDLI-HWTP 224 (364)
T ss_dssp EEECS------SSBEEEEESSSS-SEEE
T ss_pred EEEcC------CeEEEEeCCCcc-cceE
Confidence 99842 122345788877 5876
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-09 Score=113.74 Aligned_cols=177 Identities=9% Similarity=0.025 Sum_probs=120.6
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe----ceeccCCCcccccccCCCCee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE----GIVLAAEETNETHDLYKLNVL 226 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~----g~vL~~~~~~~~~~~~~~~~i 226 (466)
++.++++++.+|+|+||-.+.. .|+..++|+||+||+.. +.+|.+... .+..++
T Consensus 41 DPnG~~yD~~~G~YHlFYQ~~P----------------~gWgHa~S~DLvhW~~~~~~~~~aL~P~~~------~D~~G~ 98 (634)
T 3lig_A 41 DPCAHYTDPSTGLFHVGFLHDG----------------DGIAGATTANLATYTDTSDNGSFLIQPGGK------NDPVAV 98 (634)
T ss_dssp EECCCEECTTTCCEEEEEEETT----------------SCEEEEEESSSSCCEESCSTTCEEECSCSS------SCSSEE
T ss_pred CCccceEeCCCCEEEEEEecCC----------------CceeEEEecCcCceeECcCCCCceecCCCC------CCCCCc
Confidence 3446778666899999987642 13789999999999999 788876542 245679
Q ss_pred eeceEEEEccCCEEEEEEEEeCC---------CCCcceEEEEEeCCCCCCceecc--c---cCCCCC---CccCceEEEc
Q 012300 227 ERPKVIYNDRTGKYVMWMHIDDC---------NYTKAAVGVAISDYPTGPFDYLY--S---KRPHGF---DSRDMTIFKD 289 (466)
Q Consensus 227 WAP~viyn~~~GkYyly~s~~~~---------~~~~~~IGVA~SdsP~GPf~~~~--~---~~p~g~---~~iDp~vF~D 289 (466)
|..+++.+..+|+++|+|+.... ..+.+.+++|+|++-.-.|+... . ..|.|. ..+||.||.+
T Consensus 99 ~SGSav~~~~~g~~~~~YTg~~~~~~~~~~~~~~~~q~Q~lA~S~D~g~~w~K~~~nPVi~~~p~g~~~~~fRDPkV~~~ 178 (634)
T 3lig_A 99 FDGAVIPVGVNNTPTLLYTSVSFLPIHWSIPYTRGSETQSLAVARDGGRRFDKLDQGPVIADHPFAVDVTAFRAPFVFRS 178 (634)
T ss_dssp EEEEEESSCGGGSCEEEEEEECSCCCCTTSCCCTTSEEEEEEEEEGGGTEEEECSSSCSBCSSSTTCCEEEEEEEEEECC
T ss_pred EeeEEEEECCCCEEEEEEEecccccccccCcCCCCcEEEEEEEECCCCCEEEECCCCceEcCCCcccCCCccCCCeEccc
Confidence 99999963347899999987632 11246789999987323677642 1 124442 5799999992
Q ss_pred -----------------------------CCCcEEEEEEecCC---CcEEEEEc-CCC---CCCcc--ccEEEe------
Q 012300 290 -----------------------------DDGVAYLVYSSEDN---SELHIGPL-TSD---YLDVS--NVVRRI------ 325 (466)
Q Consensus 290 -----------------------------dDG~~YL~~g~~~n---~~i~i~~L-s~D---~~~~~--g~~~~i------ 325 (466)
.+|++||+.++... +.+.+.+- ++| +..++ |+....
T Consensus 179 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ymvlg~~~~~~~g~v~lY~~~s~dd~~l~~W~~~g~l~~~~~~~~~ 258 (634)
T 3lig_A 179 ARLDVLLSLDEEVARNETAVQQAVDGWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEFQYWEYLGEWWQEATNSSW 258 (634)
T ss_dssp HHHHHHHHSCTTTTTSHHHHHHHHHTCCGGGCCCEEEEEEEETTTEEEEEEEEEGGGCTTCCSCEEEEEEEEECCTTCCS
T ss_pred cCccccccccccccccccccccccccccCCCCeEEEEEEEecCCCCCEEEEEEeCCCCccccCCceEecccccccccccc
Confidence 47899999987421 34555553 455 77764 333221
Q ss_pred --------ecCceeeeeEEEEECC--------EEEEEEeC
Q 012300 326 --------LVGQHREAPALFKHLG--------TYYMVTSG 349 (466)
Q Consensus 326 --------~~g~~~EgP~ifK~~G--------~YYL~yS~ 349 (466)
..|...|+|-+|+-++ +++|+++.
T Consensus 259 g~~~~~~~~~G~~wECPdlf~l~~~g~~~~~~~~vl~~~~ 298 (634)
T 3lig_A 259 GDEGTWAGRWGFNFETGNVLFLTEEGHDPQTGEVFVTLGT 298 (634)
T ss_dssp SSSSCSSCCCCSEEEEEEEEEECSSSBCTTTSEEEEEEEE
T ss_pred cccccccCceeeEEECCCEEEECCcccCCCCCcEEEEECC
Confidence 0134689999999864 57888874
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=105.68 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=53.7
Q ss_pred CcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCC
Q 012300 189 IGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDY 263 (466)
Q Consensus 189 ~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~Sds 263 (466)
.++..+.|+||.+|+....++.... ...++|||+|+. .+|||||+++.... -.+...+..++|++
T Consensus 310 IGLa~~~s~Dl~~We~~~PL~~a~~--------v~deiErP~V~~--~~GkyYLFtSs~~~t~a~~~~G~~g~yg~VSds 379 (493)
T 1w18_A 310 IGLAIATDSTLSKWKFLSPLISANC--------VNDQTERPQVYL--HNGKYYIFTISHRTTFAAGVDGPDGVYGFVGDG 379 (493)
T ss_dssp EEEEEESSTTSCCEEEEEEEEECTT--------TBSCCEEEEEEE--ETTEEEEEEEECGGGBCTTCCCCSEEEEEEESS
T ss_pred EEEEEeCCCCCccceecCccccCCC--------CCCcEECCeEEE--ECCEEEEEEEccCccccCCccCCcceEEEEeCC
Confidence 3455666679999998776655433 245799999996 89999999997631 11112455689999
Q ss_pred CCCCceecc
Q 012300 264 PTGPFDYLY 272 (466)
Q Consensus 264 P~GPf~~~~ 272 (466)
++|||+.+.
T Consensus 380 l~GPY~PLn 388 (493)
T 1w18_A 380 IRSDFQPMN 388 (493)
T ss_dssp SEECCEEST
T ss_pred CCCCCEecc
Confidence 999999754
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-08 Score=98.83 Aligned_cols=119 Identities=16% Similarity=0.074 Sum_probs=79.4
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
||.|++. +|+|||+-|. .. ....+.+++|+||++|+..+.++.. +. ....+.|+.
T Consensus 118 DP~v~~~--~d~yym~yt~-~~-------------~~~~i~la~S~Dl~~W~~~~~i~~~----~~-----rd~~~fp~~ 172 (338)
T 1vkd_A 118 DPRVVKI--EDTYYITFCT-DD-------------HGPTIGVGMTKDFKTFVRLPNAYVP----FN-----RNGVLFPRK 172 (338)
T ss_dssp EEEEEEE--TTEEEEEEEE-ES-------------SSEEEEEEEESSSSSEEEECCSSSS----SE-----EEEEECSSC
T ss_pred CcEEEEE--CCEEEEEEEE-cC-------------CcceEEEEEECCCCeEEECCccCCC----cC-----CceEEEEEE
Confidence 7778875 4799998875 32 1235889999999999998876532 11 223444432
Q ss_pred EEEccCCEEEEEEEEeCC-CCCcceEEEEEeCCCCCCceeccccC-CCCCCccC-------ceEEEcCCCcEEEEEEec
Q 012300 232 IYNDRTGKYVMWMHIDDC-NYTKAAVGVAISDYPTGPFDYLYSKR-PHGFDSRD-------MTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~-~~~~~~IGVA~SdsP~GPf~~~~~~~-p~g~~~iD-------p~vF~DdDG~~YL~~g~~ 301 (466)
.+|+|+|++...+. .....+|++|+|+++.. |+...... +.....+| |.+|+.++| .+|+|.+.
T Consensus 173 ----i~Gky~m~~~~q~~~~~~~~~I~~a~S~Dl~~-W~~~~~l~~~~~~~~wE~~~ig~gp~~i~~~~g-wll~y~G~ 245 (338)
T 1vkd_A 173 ----INGKYVMLNRPSDNGHTPFGDIFLSESPDMIH-WGNHRFVLGRSSYNWWENLKIGAGPYPIETSEG-WLLIYHGV 245 (338)
T ss_dssp ----BTTBEEEEEEECCSSSCSCCCEEEEEESSSSC-BEEEEEEECCCSSCGGGSSEEEECSCCEEETTE-EEEEEEEE
T ss_pred ----ECCEEEEEEEecCCCCCCCcEEEEEEcCCccc-CCcCceEEcCCCCCCcccCccccCCCcEEeCCc-EEEEEecc
Confidence 38999999976432 12467899999999876 88644322 22112467 889987777 67777753
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=99.74 Aligned_cols=209 Identities=10% Similarity=0.069 Sum_probs=117.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeecc--------CCcceEEeeeCCCCccCCC----CC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLD--------ENSQLRHVFFPDMKTAIDP----MK 125 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~--------~~~~v~~~~~p~~~t~~dp----~~ 125 (466)
.-|..|+||+|||+.+.||++++ .|.+- .+..|++-+-.-.+ .++.+.++|| + ...+. ..
T Consensus 51 WgHa~S~Dlv~W~~~~~al~~~g---~P~~d--~~g~~SGsav~~~~~~~g~~~~~~~~~~l~YT-g--~~~~~~~~~~~ 122 (518)
T 1y4w_A 51 WGHAISEDLTHWEEKPVALLARG---FGSDV--TEMYFSGSAVADVNNTSGFGKDGKTPLVAMYT-S--YYPVAQTLPSG 122 (518)
T ss_dssp EEEEEESSSSSCEEEEEEECCBT---TTSCC--CBEEEEEEEEECTTCTTSCCCSSSCCEEEEEE-E--EESSCEECTTS
T ss_pred EEEEEeCCCccEEECCceEecCC---CCCCC--CCceEeeeEEEcCCCccccccCCCccEEEEEe-e--eeccccccccc
Confidence 34899999999999999994431 24321 23566663322111 1236656666 1 11111 10
Q ss_pred c---cCCCceee--e--cCceeeCC-CCCeEEe-------------eCCceEEECCCCEEEEEEEeCCCCCccccccccc
Q 012300 126 D---NGNDSFYY--Y--PGRIWLDT-EGAPIQA-------------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAA 184 (466)
Q Consensus 126 ~---~~~~~~~i--~--pg~~w~dt-~GnpI~a-------------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~ 184 (466)
. .....+.+ . +|..|... .+|||+. +||.|.+.+.+|+|||+.+-..
T Consensus 123 ~~~~~~~q~q~lA~s~D~g~~w~k~~~~~pvi~~~~~~y~~~~~~fRDP~V~~~~~~g~w~mv~~~g~------------ 190 (518)
T 1y4w_A 123 QTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWVVVTSIAE------------ 190 (518)
T ss_dssp CEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEETTTTEEEEEEEEGG------------
T ss_pred cccccceeEEEEEEEcCCCceEEEcCCCCCeEecCCcccccCCCCcCCCcEeEECCCCcEEEEEEecC------------
Confidence 0 00011111 1 35567766 5677763 4667887766799999843110
Q ss_pred eeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccC----CEEEEEEEEeCCCC---CcceEE
Q 012300 185 RVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT----GKYVMWMHIDDCNY---TKAAVG 257 (466)
Q Consensus 185 ~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~----GkYyly~s~~~~~~---~~~~IG 257 (466)
...+.+|+|+||.+|+..+....... .+.+.++|+++.-+.+ ++|||.++...... +....+
T Consensus 191 ---~~~i~ly~S~DL~~W~~~~~~~~~~~--------~~~mwECPdlf~l~~~g~~~~k~vL~~s~~~~~~~~~~~~~~~ 259 (518)
T 1y4w_A 191 ---LHKLAIYTSDNLKDWKLVSEFGPYNA--------QGGVWECPGLVKLPLDSGNSTKWVITSGLNPGGPPGTVGSGTQ 259 (518)
T ss_dssp ---GTEEEEEEESSSSSCEEEEEECCCSC--------CSSEEEEEEEEEEEBTTSSCEEEEEEEEEESCCSTTCCSCEEE
T ss_pred ---CCeEEEEECCCCCCCeECccccccCC--------CCCeEECCeEEEeecCCCCceeEEEEeccCCCCccccccCCcE
Confidence 12489999999999999987654211 2457889999963223 58999999864321 134556
Q ss_pred EEEeCCCCCCceeccc----------cCCCCCCccCceEEEc-CCCcEEEE
Q 012300 258 VAISDYPTGPFDYLYS----------KRPHGFDSRDMTIFKD-DDGVAYLV 297 (466)
Q Consensus 258 VA~SdsP~GPf~~~~~----------~~p~g~~~iDp~vF~D-dDG~~YL~ 297 (466)
+++.+--...|+.... ....|....=|..|.| +||+.+|+
T Consensus 260 Y~vG~~d~~~f~~~~~~~~~~~~~~~~lD~G~dfYA~qtf~d~~~gRri~~ 310 (518)
T 1y4w_A 260 YFVGEFDGTTFTPDADTVYPGNSTANWMDWGPDFYAAAGYNGLSLNDHVHI 310 (518)
T ss_dssp EEEEEECSSCEEECTTTSCSSSSCCEESCSSSSCEEEEECBSCCGGGCEEE
T ss_pred EEEEEeeCCEEEeCCcccccccccceEEccCCCCccccccccCCCCCEEEE
Confidence 6665422245664310 0112333333556666 47765543
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.4e-07 Score=95.33 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=112.5
Q ss_pred cCccccchhhhhhccccCCCCCCCCCCcccccCCCcccce-eee-------ecc---CCcceEEeeeCCCCccCCCCCcc
Q 012300 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTL-IDE-------FLD---ENSQLRHVFFPDMKTAIDPMKDN 127 (466)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-v~~-------f~~---~~~~v~~~~~p~~~t~~dp~~~~ 127 (466)
-|..|+||+|||+.+.||.|-. + .+..|..- |.. |.. .+..+..+|| + ..+....
T Consensus 57 GHa~S~DLvhW~~~~~aL~P~~--------d-~~G~~SGSav~d~~~t~g~~~~~~~p~~~l~~~YT-g----~~~~~q~ 122 (509)
T 3kf3_A 57 GHATSNDLVHWDEHEIAIGPEH--------D-NEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYT-N----NIPDNQT 122 (509)
T ss_dssp EEEEESSSSSCEECSCCBCCSS--------T-TCEEEEEEEEECTTCTTSCCCTTSCGGGCEEEEEE-E----EETTEEE
T ss_pred EEEEccCCCCcEECcccccccc--------c-CCCEEeceEEEeCCccccccccccCCCCceEEEEC-C----CCCCCee
Confidence 4789999999999999997641 1 11233331 110 110 1234546666 1 1111110
Q ss_pred CCCceeeecCceeeCCCCCeEEe------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCC
Q 012300 128 GNDSFYYYPGRIWLDTEGAPIQA------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWT 201 (466)
Q Consensus 128 ~~~~~~i~pg~~w~dt~GnpI~a------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~ 201 (466)
-.-+.+.-+|..|..-.+|||+. +||.|.+.+.+|+|||+..... -..+.+|+|+||++
T Consensus 123 q~lA~S~D~g~~~~k~~~nPVi~~~~~~fRDPkVfw~~~~g~w~Mv~g~~~---------------~g~i~ly~S~DL~~ 187 (509)
T 3kf3_A 123 QDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQWIMVVSKSQ---------------EYKIQIFGSANLKN 187 (509)
T ss_dssp EEEEEESSSSSSCEECTTCCSBCCSCSSCEEEEEEEETTTTEEEEEEEEGG---------------GTEEEEEEESSSSS
T ss_pred EEEEEECCCCcceEEcCCCceEcCCCCcccCCeEEEECCCCEEEEEEEECC---------------CCEEEEEECCCCCC
Confidence 10111111245676656677763 6899988777899999865311 12488999999999
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEcc----CCEEEEEEEEeCCC-CCcceEEEEEeCCCCCCceeccc---
Q 012300 202 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDR----TGKYVMWMHIDDCN-YTKAAVGVAISDYPTGPFDYLYS--- 273 (466)
Q Consensus 202 W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~----~GkYyly~s~~~~~-~~~~~IGVA~SdsP~GPf~~~~~--- 273 (466)
|+..+.++. .. .+.+.+.|+++.=.. ++|++|.++..... .+....++++.+==...|+....
T Consensus 188 W~~~~~~~~-~~--------~G~mwECPdlf~l~~~~~~~~k~vL~~s~~~~~p~g~~~~~Y~vG~~d~~~f~~~~~~~~ 258 (509)
T 3kf3_A 188 WVLNSNFSS-GY--------YGNQYECPGLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFDGFQFVPDDSQTR 258 (509)
T ss_dssp CEEEEEECC-BC--------CCSCEEEEEEEEEEBTTSSCEEEEEEEEECSCCTTSSCEEEEEEEEECSSCEEESSCBCE
T ss_pred ceEcccccc-CC--------ccceeECCeEEEECccCCCCceEEEEEccCCCCCCCCCceEEEEEEEeCCEEEecCccce
Confidence 999998765 11 134677999996211 47999999876421 12233455554311124543211
Q ss_pred cCCCCCCccCceEEEcCCCcEEEE
Q 012300 274 KRPHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 274 ~~p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
....|....=|..|.+++|+..|+
T Consensus 259 ~lD~G~DfYA~qtf~~~~grri~i 282 (509)
T 3kf3_A 259 FVDIGKDFYAFQTFSEVEHGVLGL 282 (509)
T ss_dssp ESCCSSSCEEEEECBSCSSSEEEE
T ss_pred eeccCCcceeeceeeCCCCCEEEE
Confidence 112344444455565567876543
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-06 Score=87.98 Aligned_cols=230 Identities=12% Similarity=0.117 Sum_probs=132.1
Q ss_pred CCeeeece-EEEEccCCEEEEEEEEeCC--CCCcceEEEEEeCCCCCCceecccc-CCC----CCCccCceEEEcCCCcE
Q 012300 223 LNVLERPK-VIYNDRTGKYVMWMHIDDC--NYTKAAVGVAISDYPTGPFDYLYSK-RPH----GFDSRDMTIFKDDDGVA 294 (466)
Q Consensus 223 ~~~iWAP~-viyn~~~GkYyly~s~~~~--~~~~~~IGVA~SdsP~GPf~~~~~~-~p~----g~~~iDp~vF~DdDG~~ 294 (466)
.+.|.-|. ++| .+|+|+|||..... ..+....|.|+|++.. .|+..+.. .|. ......+++++|+||+.
T Consensus 49 ~gwmNDPNG~~y--~~G~YHlFYQ~~P~~~~wg~~~WgHa~S~DLv-hW~~~~~aL~P~~~~d~~g~~SGSav~~~dg~~ 125 (526)
T 3pij_A 49 GGWINDPNGLCF--YKGRWHVFYQLHPYGTQWGPMHWGHVSSTDML-NWKREPIMFAPSLEQEKDGVFSGSAVIDDNGDL 125 (526)
T ss_dssp SEEEEEEEEEEE--ETTEEEEEEEEETTCSSSCSBEEEEEEESSSS-SEEECCCCBCCCBGGGTTEEEEEEEEECTTSCE
T ss_pred cCCeeCCeEEEE--ECCEEEEEEEcCCCCCCcCCcEEEEEEeCCCC-CceeCeeccCCCCccccCCeEeceEEEccCCEE
Confidence 45577777 777 79999999987653 2456889999999965 78876542 231 13456788999889999
Q ss_pred EEEEEecC--------C---CcEEEEEcCCCC-CCccccEEEeecC------ceeeeeEEEEECCEEEEEEeCCCCCCCC
Q 012300 295 YLVYSSED--------N---SELHIGPLTSDY-LDVSNVVRRILVG------QHREAPALFKHLGTYYMVTSGCTGWAPN 356 (466)
Q Consensus 295 YL~~g~~~--------n---~~i~i~~Ls~D~-~~~~g~~~~i~~g------~~~EgP~ifK~~G~YYL~yS~~tg~~~n 356 (466)
||+|.+.. + ....++..++.. .+++... .++.. ..+..|.||+.+|+|||+..........
T Consensus 126 ~l~YTg~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~-pvi~~P~~~~~~~fRDP~V~~~~g~w~mv~ga~~~~~~G 204 (526)
T 3pij_A 126 RFYYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQG-MIIDCPTDKVDHHYRDPKVWKTGDTWYMTFGVSSADKRG 204 (526)
T ss_dssp EEEEEEEEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEE-EEECCCGGGEEEEEEEEEEEEETTEEEEEEEEEETTSCE
T ss_pred EEEEecccCcccccCCCCceeEEEEEEECCCCcceEEECC-ccccCCCCccccccccCEEEEECCEEEEEEEEecCCCCc
Confidence 99998751 1 123344433332 5554322 22221 2478999999999999998532211111
Q ss_pred cEEEEEeCCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCc---ccEEEEEeEeCCC-C---CCCCeeEEEEEE
Q 012300 357 EALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLP---GLYIFMADRWNPA-D---LRESRYIWLPLI 429 (466)
Q Consensus 357 ~~v~~~Sds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~---~~yi~~~d~w~~~-~---~~~~R~v~lPl~ 429 (466)
..+.|+|+++. -|++.+..+...+. .++.--.-.+++++|.+ .|+|++.-.-... + .+.+...++.-.
T Consensus 205 ~i~ly~S~Dl~-~W~~~g~l~~~~~~----~g~mwECPdlf~l~~~~g~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~ 279 (526)
T 3pij_A 205 QMWLFSSKDMV-RWEYERVLFQHPDP----DVFMLECPDFSPIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAGYMIGT 279 (526)
T ss_dssp EEEEEEESSSS-SCEEEEEEEECSCT----TCCEEEEEEEEEEECTTSCEEEEEEEEEESCCCBTTBSCSSSEEEEEEEE
T ss_pred EEEEEECCCCC-cceEcCcccccCCC----ccCeEECCEEEEECCCCCceeEEEEEeccccCCCccccccccceeEEEEE
Confidence 34457899886 59887653322110 11111123456665422 3455444222111 1 012233444445
Q ss_pred Ec-CC---CC-CCCccccCC---------CccceeeEEeccccCCC
Q 012300 430 VR-GP---AD-RPLEYNFGF---------PLWSRVSIYWHKKWRLP 461 (466)
Q Consensus 430 ~~-~~---~~-~~~~~~~~~---------~~~~~~~~~~~~~w~~~ 461 (466)
|+ +. .+ .....++|+ |.=+|+-|-|-..|+.+
T Consensus 280 ~d~~~~f~~~~~~~~lD~G~dfYA~qtf~~~gRri~~gW~~~~~~~ 325 (526)
T 3pij_A 280 WEPGGEFKPETEFRLWDCGHNYYAPQSFNVDGRQIVYGWMSPFVQP 325 (526)
T ss_dssp ECTTSCEEESSCCEESCCSSSCEEEEEEEETTEEEEEEEECCCSSC
T ss_pred EcCCCcEEECCcceeeeeCCCccccceeCCCCCEEEEEecCCCccc
Confidence 55 21 01 112234444 55579999999999854
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-07 Score=94.73 Aligned_cols=198 Identities=10% Similarity=0.049 Sum_probs=109.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccC-----CcceEEeeeCCCCccCCCCCccCCCce
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDE-----NSQLRHVFFPDMKTAIDPMKDNGNDSF 132 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~-----~~~v~~~~~p~~~t~~dp~~~~~~~~~ 132 (466)
--|..|+||+|||+.+.||.|-. .+..|..-+-.-.+. +..+..+|| +. ..+. .......+
T Consensus 42 WgHa~S~DLvhW~~~~~aL~P~~----------~~g~~SGSav~~~~~~~g~~~~~~~l~YT-g~--~~~~-~~~q~q~l 107 (492)
T 4ffh_A 42 WDHASTTDGVAFTHHGTVMPLRP----------DFPVWSGSAVVDTANTAGFGAGAVVALAT-QP--TDGV-RKYQEQYL 107 (492)
T ss_dssp EEEEEESSSSSCEEEEEEECCBT----------TBCCCCEEEEEETTCSSSSCTTEEEEEEE-EE--GGGC-GGGEEEEE
T ss_pred EEEEEeCCCCccEECCCCCCCCC----------CCCEEeceEEEeCCCccccCCCcEEEEEe-ec--ccCC-CCcEEEEE
Confidence 56889999999999999997631 112333311111000 113445555 11 0110 00000001
Q ss_pred eee--cCceeeCCCCCeEE-------------------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcE
Q 012300 133 YYY--PGRIWLDTEGAPIQ-------------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGV 191 (466)
Q Consensus 133 ~i~--pg~~w~dt~GnpI~-------------------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi 191 (466)
.+. +|..|... +|||+ -+||.|.+.+.+|+|||+-. .. ..+
T Consensus 108 A~S~D~g~~w~k~-~nPvi~~p~~~~~~~~~~~~~~~~fRDP~V~~~~~~g~w~mv~a-~~----------------~~i 169 (492)
T 4ffh_A 108 YWSTDGGFTFTAL-PDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIG-RL----------------RYA 169 (492)
T ss_dssp EEESSSSSSCEEC-SSCSBCCTTTTTCCSHHHHHHHTCEEEEEEEEETTTTEEEEEEE-ET----------------TEE
T ss_pred EEeCCCCceEEEc-CccccCCCCccccccccccccCCCCcCCEEEEECCCCEEEEEEE-CC----------------CeE
Confidence 111 24456554 56654 24888888766899999872 11 248
Q ss_pred EEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccC-----CEEEEEEEEeCCCC-CcceEEEEEeCCCC
Q 012300 192 GCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT-----GKYVMWMHIDDCNY-TKAAVGVAISDYPT 265 (466)
Q Consensus 192 ~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~-----GkYyly~s~~~~~~-~~~~IGVA~SdsP~ 265 (466)
.+|+|+||++|+..+..+.... .+.+.+.|+++. .+ +|++|.++...... +....++++.+==.
T Consensus 170 ~ly~S~DL~~W~~~~~~~~~~~--------~g~mwECPdlf~--l~~~~~~~k~vL~~s~~~~~~~~~~~~~Y~vG~~d~ 239 (492)
T 4ffh_A 170 AFYTSPNLRDWTLRRNFDYPNH--------ALGGIECPDLFE--ITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDG 239 (492)
T ss_dssp EEEEESSSSSCEECCCEECSCG--------GGCCCEEEEEEE--EECTTSCEEEEEEEECCCGGGTCCSSEEEEEEEECS
T ss_pred EEEECCCCCCceEeccccccCC--------ccceEECCeEEE--ECCCCCCceEEEEEccCCCCCCCccceEEEEEEeeC
Confidence 8999999999999998655321 234667999996 33 69999999653211 12334444433102
Q ss_pred CCceecc-c--cCCCCCCccCceEEE---cCCCcEEEE
Q 012300 266 GPFDYLY-S--KRPHGFDSRDMTIFK---DDDGVAYLV 297 (466)
Q Consensus 266 GPf~~~~-~--~~p~g~~~iDp~vF~---DdDG~~YL~ 297 (466)
..|+... . ....|....=|..|. +++|+.+|+
T Consensus 240 ~~f~~~~~~~~~lD~G~dfYA~qtf~~~~~~~grri~~ 277 (492)
T 4ffh_A 240 EQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRLAI 277 (492)
T ss_dssp SCEEESCSSCEESCCSSCCEEEEEEECSSCTTTCEEEE
T ss_pred CEEEeCCCCccceeeCCCcccCCeEccCCCCCCCEEEE
Confidence 3455321 1 112344455566788 357876554
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-07 Score=94.47 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=92.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc-cCCCceee-e
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD-NGNDSFYY-Y 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~-~~~~~~~i-~ 135 (466)
..|..|+||+|||+.+.+|.|-. + .+..|+|-+-.- +..+.+.|| +... .++... .....+.+ .
T Consensus 46 wgha~S~Dlv~W~~~~~aL~p~~----~-----~~g~~sgsav~~---~g~~~l~YT-g~~~-~~~~~~~~~~q~lA~S~ 111 (432)
T 1w2t_A 46 WGHAVSDDLVHWRHLPVALYPDD----E-----THGVFSGSAVEK---DGKMFLVYT-YYRD-PTHNKGEKETQCVVMSE 111 (432)
T ss_dssp EEEEEESSSSSCEEEEEEECCSS----T-----TEEEEEEEEEEE---TTEEEEEEE-EEEC-CCSSCCCEEEEEEEEES
T ss_pred EEEEEcCCCcCeEECCccCCCCC----C-----CCCEEeeEEEEE---CCEEEEEEe-cCcc-CCCCCCceEEEEEEEeC
Confidence 45789999999999999986531 1 124677755432 556656666 1100 011110 00001111 1
Q ss_pred cCceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe
Q 012300 136 PGRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE 205 (466)
Q Consensus 136 pg~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~ 205 (466)
.+..|....++||.. .||.|.++ +|+|||+-...... ....+.+|+|+||.+|+..
T Consensus 112 D~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~--dg~~~m~~g~~~~~------------~~g~i~ly~S~Dl~~W~~~ 177 (432)
T 1w2t_A 112 NGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRS--NGEWRMVLGSGKDE------------KIGRVLLYTSDDLFHWKYE 177 (432)
T ss_dssp SSSCCEECTTCCSBCSCSSTTEEEEEEEEEEEC--SSSEEEEEEEEETT------------TEEEEEEEEESSSSSCEEE
T ss_pred CCCeEEecCCCceEeCCCccccccccCCEEEEE--CCEEEEEEEEecCC------------CCcEEEEEECCCCCCceEc
Confidence 345676654566642 57777754 68999874322100 0124889999999999999
Q ss_pred ceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeC
Q 012300 206 GIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD 248 (466)
Q Consensus 206 g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~ 248 (466)
+.++.. . .+.+.++|+++. .+|+|||+|+...
T Consensus 178 g~~~~~-~--------~g~~~EcP~lf~--~~g~~vL~~s~~g 209 (432)
T 1w2t_A 178 GAIFED-E--------TTKEIDCPDLVR--IGEKDILIYSITS 209 (432)
T ss_dssp EEEEEE-T--------TCSCCEEEEEEE--ETTEEEEEEEETT
T ss_pred cccccC-C--------CCCEEECCeEEE--ECCEEEEEEeCCC
Confidence 876542 1 134578999996 7899999999754
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.1e-07 Score=95.72 Aligned_cols=160 Identities=12% Similarity=0.144 Sum_probs=89.8
Q ss_pred CccccchhhhhhccccCCCCCCC--CCCcccccCCCcccceeee-eccCCcceEEeeeCCCCccCCCCCccCCCceeee-
Q 012300 60 NPSFRELVEVEEENIQIPPPRGK--RSPRAAKRRPKRTTTLIDE-FLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY- 135 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~v~~-f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~- 135 (466)
|..|+||+|||+.+.|||.-.+- -|..++...+.+ .- +.+.++.+..+|| + .......-...+.+.
T Consensus 74 Ha~S~DLvhW~~~~~aL~d~~g~~~~SGSav~~~~~~-----~g~~~~~~~~l~l~YT-g----~~~~~~~q~q~lA~s~ 143 (516)
T 3sc7_X 74 HATSTDLMHWAHKPTAIADENGVEAFTGTAYYDPNNT-----SGLGDSANPPYLAWFT-G----YTTSSQTQDQRLAFSV 143 (516)
T ss_dssp EEEESSSSSCEEEEEEECCBTTEEEEEEEEEECTTCT-----TSSSCSSSCCEEEEEE-E----EETTTTEEEEEEEEES
T ss_pred EEEeCCCCcceecCccccCCCCceeEeceEEEeCCcc-----cccccCCCCeEEEEEe-e----eeCCCCceEEEEEEec
Confidence 78899999999999999643211 112222111000 00 1111234546666 1 111111000111111
Q ss_pred -cCceeeCCCCCeEEe---------------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCC
Q 012300 136 -PGRIWLDTEGAPIQA---------------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDM 199 (466)
Q Consensus 136 -pg~~w~dt~GnpI~a---------------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DL 199 (466)
.|..|....+|||+. +||.|.+.+++|+|||+-.... ...+.+|+|+||
T Consensus 144 D~g~~w~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~~~~g~w~mv~g~~~---------------~~~i~ly~S~DL 208 (516)
T 3sc7_X 144 DNGATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNWIMVLAHGG---------------QDKLSFWTSADT 208 (516)
T ss_dssp STTSCCEECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEETTTTEEEEEEECBT---------------TCEEEEEEESSS
T ss_pred CCCceEEEcCCCceEcCCCcccccccCCCcccCCeEEEECCCCeEEEEEEECC---------------CCEEEEEECCCC
Confidence 355676656677652 5788888777899999854211 124889999999
Q ss_pred CCCEEeceeccCCCcccccccCCCCeeeeceEEEEcc----CCEEEEEEEEe
Q 012300 200 WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDR----TGKYVMWMHID 247 (466)
Q Consensus 200 v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~----~GkYyly~s~~ 247 (466)
++|+..+......... . ...+.+.+.|+++.=.. ++|++|.++..
T Consensus 209 ~~W~~~~~l~~~~~~g-~--~~~~~mwECPdlf~l~~~g~~~~k~VL~~s~~ 257 (516)
T 3sc7_X 209 INWTWQSDLKSTSING-L--SSDITGWEVPDMFELPVEGTEETTWVVMMTPA 257 (516)
T ss_dssp SSCEEEEEEEGGGSTT-C--CTTCCCBCCCEEEEEECSSSSCEEEEEEECCS
T ss_pred CCceEcccccccCCCC-c--ccccceEECCcEEEecccCCCCceEEEEECCC
Confidence 9999999865432110 0 00124678999985211 36899999864
|
| >3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.9e-06 Score=87.96 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred cCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-----CCcceEEEEEeC
Q 012300 188 IIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-----YTKAAVGVAISD 262 (466)
Q Consensus 188 ~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~-----~~~~~IGVA~Sd 262 (466)
..++..++|+|+..|+..+.++..... ..++++|+|+. .+||||||++..... .+.-.+.=.|||
T Consensus 307 ~IGLa~~~s~D~~~We~~~PL~~a~~v--------~deiErP~vf~--~dGKyYLFt~s~~~t~a~~~~g~~~~yGfVSd 376 (496)
T 3vss_A 307 NVGLAKAKNKQLTEWEFLPPILSANCV--------TDQTERPQIYF--KDGKSYLFTISHRGTFAAGLDGPEGVYGFVGD 376 (496)
T ss_dssp EEEEEEESSTTSCCEEEEEEEEEEETT--------BSCCEEEEEEE--ETTEEEEEEEECSTTBCTTCCCCSEEEEEEES
T ss_pred eEEEEEccCCCCCccEEeCccccCCCC--------CCceeCCcEEE--ECCEEEEEEecccccccccCCCCceeEEEecC
Confidence 345666779999999998877654322 45799999996 999999999875321 122234446799
Q ss_pred CCCCCceecc
Q 012300 263 YPTGPFDYLY 272 (466)
Q Consensus 263 sP~GPf~~~~ 272 (466)
+..|||+++.
T Consensus 377 ~L~G~Y~PLN 386 (496)
T 3vss_A 377 GIRSDYQPLN 386 (496)
T ss_dssp SSSBCCEETT
T ss_pred CCCCCceecc
Confidence 9999999864
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=85.83 Aligned_cols=157 Identities=12% Similarity=0.018 Sum_probs=89.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
--|..|+||+|||+.+.||.|- . +.+.. ..|..-+. .+.+..+.++|| + ...+.... -.-+.+--.+
T Consensus 62 WGHa~S~DLvhW~~~p~AL~P~-----~-~~D~~-G~~SGSav--v~~dg~~~l~YT-g--~~~~~~q~-q~lA~S~D~~ 128 (546)
T 3ugf_A 62 WGHTVSRDLIHWLYLPLALAAD-----Q-WYDMQ-GVFSGSAT--CLPDGRIMMLYT-G--VTKEMVEM-LSLAYPADLS 128 (546)
T ss_dssp EEEEEESSSSSCEECCCCBCSC-----S-GGGTT-CEEEEEEE--ECTTSCEEEEEE-E--ECTTCCEE-EEEEEESCTT
T ss_pred EEEEEcCCcCccccCCCCCCCC-----c-ccccC-CcCcceEE--EeeCCeEEEEEE-e--ccCCCcEE-EEEEEECCCC
Confidence 3478999999999999999775 2 23323 35555321 123556656666 1 11111110 0000000011
Q ss_pred ----ceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCE
Q 012300 138 ----RIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWK 203 (466)
Q Consensus 138 ----~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~ 203 (466)
..|....+|||+. +||.+++.+.+|+|||+-..... ....+.+|+|+||.+|+
T Consensus 129 d~~l~~w~K~~~nPVi~~p~g~~~~~fRDPkVvw~~~~g~w~MviGa~~~-------------~~G~vllY~S~DL~~W~ 195 (546)
T 3ugf_A 129 DPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIGAKYN-------------TTGIAMVYETKDFKSFK 195 (546)
T ss_dssp CTTCCCEEECTTCCCBCCCTTSCTTSCCCBCCCEECSTTCEEEEEEEEET-------------TEEEEEEEEESSSSSCE
T ss_pred CCccceeEEcCCCceEeCCCCCCcceeeccceEeECCCCEEEEEEEEccC-------------CcceEEEEECCCCCCce
Confidence 4566555677653 47887665567899987542211 01136689999999999
Q ss_pred EeceeccCCCcccccccCCCCeeeeceEEEEcc-------------CCEEEEEEEEeC
Q 012300 204 NEGIVLAAEETNETHDLYKLNVLERPKVIYNDR-------------TGKYVMWMHIDD 248 (466)
Q Consensus 204 ~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~-------------~GkYyly~s~~~ 248 (466)
..+.++.... ..++.+.|+++.=.. +.|++|-.+...
T Consensus 196 ~~~~~~~~~~--------~~gmwECPDlf~l~~~~~~gl~~s~~g~~~k~Vl~~s~~~ 245 (546)
T 3ugf_A 196 LLEELLHAVP--------DTGLWECVDLYPVSTTGEKGLETSVNGPKVKHVLKASIDE 245 (546)
T ss_dssp ECSSCSEEET--------TCCCEEEEEEEEEESSCSSCCCTTCCSTTEEEEEEEEETT
T ss_pred EcccccccCC--------CCCeEECCeEEEECCcCccceeecccCCceeEEEEecccC
Confidence 9987654221 134678999985211 137778777643
|
| >2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-05 Score=82.24 Aligned_cols=73 Identities=21% Similarity=0.139 Sum_probs=52.8
Q ss_pred CcEEEEEeCCC----CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC--------C-----
Q 012300 189 IGVGCYSSKDM----WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN--------Y----- 251 (466)
Q Consensus 189 ~gi~v~sS~DL----v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~--------~----- 251 (466)
..|.+++|+|+ .+|+..+.++.... ...++++|+++. .+|+|||+++..... +
T Consensus 347 G~IgL~~s~dl~~n~~~We~~~pL~~~~~--------v~dm~EcP~lf~--~dG~yyL~~S~q~~~~t~~~~~~~A~g~~ 416 (571)
T 2yfr_A 347 AAIGIIKLNDDVKNPSVAKVYSPLISAPM--------VSDEIERPDVVK--LGNKYYLFAATRLNRGSNDDAWMATNKAV 416 (571)
T ss_dssp EEEEEEEECSCTTSCCEEEECCCSEECTT--------TBSCCEEEEEEE--ETTEEEEEEEEEGGGBSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCcCCcccceeccccccCCC--------cCceeecCcEEE--ECCEEEEEEeCCCCcccccccccccccCc
Confidence 46889999875 57998876544321 135789999996 899999999876321 0
Q ss_pred -CcceEEEEEeCCCCCCceec
Q 012300 252 -TKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 252 -~~~~IGVA~SdsP~GPf~~~ 271 (466)
....+...+|++++|||+..
T Consensus 417 g~~~~~y~~vSdsl~GPy~pl 437 (571)
T 2yfr_A 417 GDNVAMIGYVSDNLTHGYVPL 437 (571)
T ss_dssp SCCEEEEEEEESSSSSCCEET
T ss_pred CCceEEEEEEeCCCCCCCeeC
Confidence 11355556899999999974
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.8e-05 Score=83.44 Aligned_cols=199 Identities=16% Similarity=0.084 Sum_probs=105.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee-c
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-P 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-p 136 (466)
--|..|+||+|||+.+.+|.|. .+.++. ..|..-+.. ..+..+.++|| + .+...... ..+.+. .
T Consensus 52 WgHa~S~Dlv~W~~~~~aL~P~------~~~D~~-G~~SGsav~--~~dg~~~l~YT-g----~~~~~~~~-q~lA~s~D 116 (541)
T 2ac1_A 52 WAHSTSTDLINWDPHPPAIFPS------APFDIN-GCWSGSATI--LPNGKPVILYT-G----IDPKNQQV-QNIAEPKN 116 (541)
T ss_dssp EEEEEESSSSSBEEEEEEECCC------SGGGTT-CEEEEEEEE--CTTSCEEEEEE-E----ECTTSCEE-EEEEEESC
T ss_pred EEEEECCCccceEECceeecCC------CccccC-CEEcceEEE--eeCCEEEEEEE-E----eCCCCcEE-EEEEEECC
Confidence 3479999999999999999775 233322 445542211 12455656666 1 12111100 001111 1
Q ss_pred C-----ceeeCCCCCeEEe------------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCC
Q 012300 137 G-----RIWLDTEGAPIQA------------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDM 199 (466)
Q Consensus 137 g-----~~w~dt~GnpI~a------------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DL 199 (466)
+ ..|....+|||+. +||.+++.+.+|+|||+-..... ....+.+|+|+||
T Consensus 117 ~~d~~l~~w~k~~~nPVi~~~~~~~~~~~~fRDP~vvw~~~~g~w~m~~ga~~~-------------~~G~i~ly~S~Dl 183 (541)
T 2ac1_A 117 LSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIH-------------RRGLAITYTSKDF 183 (541)
T ss_dssp TTCTTCCCEEECTTCCSBCCCTTTCCCTTSEECCCCCEECTTSCEEEEEEEEET-------------TEEEEEEEEESSS
T ss_pred CCCCCceeEEecCCCcEEcCCCCCCCCCCceECCeEEeEeCCCeEEEEEEEecC-------------CceEEEEEECCCC
Confidence 1 3455444555542 46775554337889997432210 0113789999999
Q ss_pred CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCC----------------EEEEEEEEeCCCCCcceEEEEEeC-
Q 012300 200 WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG----------------KYVMWMHIDDCNYTKAAVGVAISD- 262 (466)
Q Consensus 200 v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~G----------------kYyly~s~~~~~~~~~~IGVA~Sd- 262 (466)
.+|+..+.++.... ...+.+.|+++.=..+| +++|..+..+. ...++++.+
T Consensus 184 ~~W~~~~~~~~~~~--------~~~mwECPdlf~l~~~g~~~l~~s~~g~~~~~~~~vl~~s~~~~----~~~~Y~~G~~ 251 (541)
T 2ac1_A 184 LKWEKSPEPLHYDD--------GSGMWECPDFFPVTRFGSNGVETSSFGEPNEILKHVLKISLDDT----KHDYYTIGTY 251 (541)
T ss_dssp SSCEECSSCSEEEE--------TSCCEEEEEEEEEESSCSCCCCTTCCCBTTBCEEEEEEEEETTT----TEEEEEEEEE
T ss_pred CCcEEcccccccCC--------CCCcccCCcEEEECCCCcceeEecCCCCCcccceeEEEeeecCC----cceEEEEEEE
Confidence 99999876654321 13567899999632212 78887765432 223344432
Q ss_pred CC-CCCceecccc--------CCCCCCccCceEEEcC-CCcEEEE
Q 012300 263 YP-TGPFDYLYSK--------RPHGFDSRDMTIFKDD-DGVAYLV 297 (466)
Q Consensus 263 sP-~GPf~~~~~~--------~p~g~~~iDp~vF~Dd-DG~~YL~ 297 (466)
+. .+.|+..... ...| ...=|..|.|+ +|+.+|+
T Consensus 252 d~~~~~f~~~~~~~~~~~~~~lD~G-dfYA~qtf~d~~~grri~~ 295 (541)
T 2ac1_A 252 DRVKDKFVPDNGFKMDGTAPRYDYG-KYYASKTFFDSAKNRRILW 295 (541)
T ss_dssp ETTTTEEEECTTCCSSTTSCBSCSS-SCEEEEEEEETTTTEEEEE
T ss_pred ecCCCeEeeCCccccccceeeecCC-CcccccEEecCCCCCEEEE
Confidence 12 2456543211 1122 33335678886 4776553
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-05 Score=80.58 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=86.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee-c
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-P 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-p 136 (466)
.-|..|+||+||++.+.+|.|. .+.+.. ..|..-+.. ..+..+.++|| + .+...... ..+.+. .
T Consensus 52 WgHa~S~Dlv~W~~~~~aL~P~------~~~D~~-Gv~SGsav~--~~dg~~~l~YT-g----~~~~~~q~-q~lA~s~D 116 (543)
T 1st8_A 52 WGHAVSYDLVNWIHLDPAIYPT------QEADSK-SCWSGSATI--LPGNIPAMLYT-G----SDSKSRQV-QDLAWPKN 116 (543)
T ss_dssp EEEEEESSSSSEEECCCSBCCC------SGGGTT-EEEEEEEEE--ETTTEEEEEEE-E----ECTTSCEE-EEEEEESC
T ss_pred EEEEECCCccceEECCeeccCC------CccccC-CEEcceEEE--eeCCEEEEEEE-E----eCCCCcEE-EEEEEECC
Confidence 3479999999999999999774 233322 344442211 12455656666 1 11111100 001111 1
Q ss_pred C-----ceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCC
Q 012300 137 G-----RIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWT 201 (466)
Q Consensus 137 g-----~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~ 201 (466)
+ ..|....+|||+. +||.+++.+.+|+|||+-..... ....+.+|+|+||.+
T Consensus 117 ~~d~~l~~w~k~~~nPVi~~~~g~~~~~fRDP~vvw~~~~g~w~mv~ga~~~-------------~~G~i~ly~S~Dl~~ 183 (543)
T 1st8_A 117 LSDPFLREWVKHPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVVGGDRD-------------NNGMAFLYQSTDFVN 183 (543)
T ss_dssp TTCTTCCCEEECTTCCSBCCCTTCCTTSEECCCCCEECTTSCEEEEEEEEET-------------TEEEEEEEEESSSSS
T ss_pred CCCCCcceeEEcCCCcEEeCCCCCCcCccCCCeEEEECCCCcEEEEEEEecC-------------CceEEEEEECCCCCC
Confidence 1 3465545566652 57876554347889997542210 012378999999999
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccC-------------CEEEEEEEE
Q 012300 202 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT-------------GKYVMWMHI 246 (466)
Q Consensus 202 W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~-------------GkYyly~s~ 246 (466)
|+..+.++.... ...+.+.|+++.=..+ .+++|.++.
T Consensus 184 W~~~~~~~~~~~--------~~~mwECPdlf~l~~~g~~~l~~s~~g~~~~~vl~~s~ 233 (543)
T 1st8_A 184 WKRYDQPLSSAD--------ATGTWECPDFYPVPLNSTNGLDTSVYGGSVRHVMKAGF 233 (543)
T ss_dssp CEECSSCSEEET--------TCCCCEEEEEEEEETTCSCCCCTTCCSTTEEEEEEEEE
T ss_pred cEECccccccCC--------CCCceeCCcEEEECCCCccceEecCCCCCceEEEEecc
Confidence 999876654321 1346789999863211 277777765
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=77.75 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=52.3
Q ss_pred cEEEE-EeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC-----CcceEE--EEEe
Q 012300 190 GVGCY-SSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY-----TKAAVG--VAIS 261 (466)
Q Consensus 190 gi~v~-sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~-----~~~~IG--VA~S 261 (466)
.|.++ .|+||.+|+..+.++..... ...+++|+++. .+|+|||+++.....+ ....+. ..+|
T Consensus 286 ~Igl~~~s~Dl~~W~~~~pL~~~~~v--------~d~~EcPdlfk--~dGkyyLf~S~~~s~~~~~g~~~~~vy~~g~vs 355 (447)
T 1oyg_A 286 ALGMIELNDDYTLKKVMKPLIASNTV--------TDEIERANVFK--MNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVS 355 (447)
T ss_dssp EEEEEEECTTSSEEEEEEEEEECTTT--------CSCCEEEEEEE--ETTEEEEEEEEEGGGCCCTTCCTTCEEEEEEEE
T ss_pred EEEEEEcCCCCCCceEccccccCCCC--------CCceEcCcEEE--ECCEEEEEEecCCCcccccCcCCCcEEEEEEEc
Confidence 56666 79999999998876654321 34689999996 8999999999764221 111232 5689
Q ss_pred CCCCCCceec
Q 012300 262 DYPTGPFDYL 271 (466)
Q Consensus 262 dsP~GPf~~~ 271 (466)
++++|||+.+
T Consensus 356 dsl~GPy~pl 365 (447)
T 1oyg_A 356 NSLTGPYKPL 365 (447)
T ss_dssp SSTTCCCEEG
T ss_pred CCCCCCCeeC
Confidence 9999999974
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0037 Score=68.02 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=90.6
Q ss_pred ecCccccchhhhhhc----cccCCCCCCCCCCcccccCCCcccceeeeecc-CCcceEEeeeCCCCccCCCCCc------
Q 012300 58 SHNPSFRELVEVEEE----NIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLD-ENSQLRHVFFPDMKTAIDPMKD------ 126 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~-~~~~v~~~~~p~~~t~~dp~~~------ 126 (466)
--|..|+||+|||+. +.||.|-. +.... ..|.-- .+.+ .+..+..+|| |...+|...
T Consensus 65 WgHa~S~DLvhW~~~~~~~~~aL~P~~------~~D~~-G~~SGS--av~~~~~g~~~~~YT---g~~~~~~~~~~~~~~ 132 (634)
T 3lig_A 65 IAGATTANLATYTDTSDNGSFLIQPGG------KNDPV-AVFDGA--VIPVGVNNTPTLLYT---SVSFLPIHWSIPYTR 132 (634)
T ss_dssp EEEEEESSSSCCEESCSTTCEEECSCS------SSCSS-EEEEEE--EESSCGGGSCEEEEE---EECSCCCCTTSCCCT
T ss_pred eeEEEecCcCceeECcCCCCceecCCC------CCCCC-CcEeeE--EEEECCCCEEEEEEE---ecccccccccCcCCC
Confidence 468899999999999 77887641 22212 233321 1111 1345657777 221222110
Q ss_pred -cCCCceeee-c-CceeeCCCCCeEEe-----------eCCceEEE----------------------------CCCCEE
Q 012300 127 -NGNDSFYYY-P-GRIWLDTEGAPIQA-----------HGGGILYD----------------------------ERSRTY 164 (466)
Q Consensus 127 -~~~~~~~i~-p-g~~w~dt~GnpI~a-----------hd~~Ii~~----------------------------~~~g~Y 164 (466)
.....+.+. + |..|....+|||+. +||.|.+. ..+|+|
T Consensus 133 ~~q~Q~lA~S~D~g~~w~K~~~nPVi~~~p~g~~~~~fRDPkV~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (634)
T 3lig_A 133 GSETQSLAVARDGGRRFDKLDQGPVIADHPFAVDVTAFRAPFVFRSARLDVLLSLDEEVARNETAVQQAVDGWTEKNAPW 212 (634)
T ss_dssp TSEEEEEEEEEGGGTEEEECSSSCSBCSSSTTCCEEEEEEEEEECCHHHHHHHHSCTTTTTSHHHHHHHHHTCCGGGCCC
T ss_pred CcEEEEEEEECCCCCEEEECCCCceEcCCCcccCCCccCCCeEccccCccccccccccccccccccccccccccCCCCeE
Confidence 000111122 3 55777666677653 46777762 246788
Q ss_pred EEEEEe-CCCCCccccccccceeccCcEEEEE--eCC---CCCCEEeceeccCCCc-------ccccccCCCCeeeeceE
Q 012300 165 FWYGEY-KDGPTYHAHKKAAARVDIIGVGCYS--SKD---MWTWKNEGIVLAAEET-------NETHDLYKLNVLERPKV 231 (466)
Q Consensus 165 YlygT~-~~~~~~~~~~~g~~~~~~~gi~v~s--S~D---Lv~W~~~g~vL~~~~~-------~~~~~~~~~~~iWAP~v 231 (466)
||.-.. ..+ ....+.+|+ |+| |.+|++.|.++..... .|..+ -+.+.+.|++
T Consensus 213 ymvlg~~~~~-------------~~g~v~lY~~~s~dd~~l~~W~~~g~l~~~~~~~~~g~~~~~~~~--~G~~wECPdl 277 (634)
T 3lig_A 213 YVAVSGGVHG-------------VGPAQFLYRQNGGNASEFQYWEYLGEWWQEATNSSWGDEGTWAGR--WGFNFETGNV 277 (634)
T ss_dssp EEEEEEEETT-------------TEEEEEEEEEGGGCTTCCSCEEEEEEEEECCTTCCSSSSSCSSCC--CCSEEEEEEE
T ss_pred EEEEEEecCC-------------CCCEEEEEEeCCCCccccCCceEecccccccccccccccccccCc--eeeEEECCCE
Confidence 876432 111 112477899 788 9999999987653211 11111 2456789999
Q ss_pred EEEcc------CCEEEEEEEEeC
Q 012300 232 IYNDR------TGKYVMWMHIDD 248 (466)
Q Consensus 232 iyn~~------~GkYyly~s~~~ 248 (466)
+.=.. +++++|.++...
T Consensus 278 f~l~~~g~~~~~~~~vl~~~~~g 300 (634)
T 3lig_A 278 LFLTEEGHDPQTGEVFVTLGTEG 300 (634)
T ss_dssp EEECSSSBCTTTSEEEEEEEEEE
T ss_pred EEECCcccCCCCCcEEEEECCCC
Confidence 96222 257888888753
|
| >4hbs_A Putative hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.80A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.13 Score=53.05 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=55.8
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCC-CCEEece------eccCCCcccc---c--c
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMW-TWKNEGI------VLAAEETNET---H--D 219 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv-~W~~~g~------vL~~~~~~~~---~--~ 219 (466)
+..++.. .+|..|+|||... . ..+.-..+.|+. .|++-.. .......... . .
T Consensus 225 G~~~~~~-~DGyvY~YGT~~g-r--------------~~lARV~~~dl~~~yeYw~g~~w~~~~w~~~~~~~~~~~~~~~ 288 (416)
T 4hbs_A 225 GDTMWED-EDGHIYLYTTSNY-K--------------VAVARTATRDLGSQWEYYVADPQGHFSWTTQYPSTQDAENSTI 288 (416)
T ss_dssp TSEEEEC-TTSCEEEEEEETT-E--------------EEEEEESSSCTTSCEEEEEECTTSCEEEESSCCCHHHHHHTCS
T ss_pred cceeEeC-CCceEEEEeCCCC-C--------------EEEEEecCccccccceEEcCccccCCCCccCCccccccccccc
Confidence 3455554 4789999999531 0 124445567776 5887421 1111000000 0 0
Q ss_pred cCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc
Q 012300 220 LYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 220 ~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~ 272 (466)
.........+.+. +..++|+|.+.... ....|++++|++|+|||+...
T Consensus 289 ~~~~~~~~~~~~~--~~~~~yv~~~~~~~---~~~~I~~~tA~sP~GPWs~p~ 336 (416)
T 4hbs_A 289 IPLESACSMPWVF--KKGDTYYMIGQSMW---FGRDVLMFRSKHPYGPFVDQK 336 (416)
T ss_dssp SCTTCCCEEEEEE--EETTEEEEEEECTT---TCSEEEEEEESSSSSCCEEEE
T ss_pred cccccccceEEEE--ccCCEEEEEEeCCC---CCCCEEEEECCCCCCCCCCCE
Confidence 0011222334444 37899999876432 235899999999999999754
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=4.3 Score=40.63 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=95.5
Q ss_pred cEEEEEeCCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEc------cCCEEEEEEEEeCCCCCcceEEEEEeC
Q 012300 190 GVGCYSSKDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYND------RTGKYVMWMHIDDCNYTKAAVGVAISD 262 (466)
Q Consensus 190 gi~v~sS~DL-v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~------~~GkYyly~s~~~~~~~~~~IGVA~Sd 262 (466)
.+.++.|+|. .+|+....+.+... .-..+..|.++..+ .+|+..+.......+....++.|..|+
T Consensus 51 ~~~v~rS~DgG~TW~~~~~v~~~~~--------g~~~~~~P~l~~lp~~v~~~~~G~ll~~~~~~~~d~~~~~~~v~~S~ 122 (355)
T 3a72_A 51 YFPIYRSKDHGKTWNEISRVHDTVN--------GYGLRYQPFLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQ 122 (355)
T ss_dssp CEEEEEESSTTSCCEEEEEECCTTT--------SSCEEEEEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEES
T ss_pred eEEEEEEcCCCcCcCCCcccCCCcC--------CcccccCCcEEecCcccccCCCCcEEEEEeeecCCCCCceEEEEEEC
Confidence 4778999885 68999876644211 11234567666532 378776654432222234678899999
Q ss_pred CCCCCceecccc----CC---CCC-CccCceEEEcCCCcEEEEEEecC----CCcEEEEEcCCCCCCccccEEEeecCce
Q 012300 263 YPTGPFDYLYSK----RP---HGF-DSRDMTIFKDDDGVAYLVYSSED----NSELHIGPLTSDYLDVSNVVRRILVGQH 330 (466)
Q Consensus 263 sP~GPf~~~~~~----~p---~g~-~~iDp~vF~DdDG~~YL~~g~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~g~~ 330 (466)
+---.|+..... .+ .|. ..+.| +....+|+..++|.... .+...+...+.|..++............
T Consensus 123 D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP-~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~S~DG~TWs~~~~~~~~~~~ 201 (355)
T 3a72_A 123 DDGMTWDFVSHIAAGGEARPNNGLTPVWEP-FLLANKGKLICYYSDQRDNATYGQTMVHQVTNDLKNWGPVVEDVTYPTY 201 (355)
T ss_dssp STTSCCEEEEEEEEESCSSCCTTCCCEEEE-EEEEETTEEEEEEEECCCTTTCSCEEEEEEESSSSSCCCCEEEECCSST
T ss_pred CCCccCccCccccccCccccccCCCccccc-eEEccCCeEEEEECCCCCCCCCCcEEEEEECCCCCCCCCCeeccccCcc
Confidence 865678865321 11 121 13356 33446899999987542 2334445567778777544332222111
Q ss_pred --ee-eeEEEEE-CCEEEEEEeCCCC---CCCCcEEEE-EeCCCCCCcee
Q 012300 331 --RE-APALFKH-LGTYYMVTSGCTG---WAPNEALVH-AAESIMGPWED 372 (466)
Q Consensus 331 --~E-gP~ifK~-~G~YYL~yS~~tg---~~~n~~v~~-~Sds~~GPw~~ 372 (466)
.. -|.+.+. +|++.|.|-.+.. ....+.+++ .|++. .-|..
T Consensus 202 ~~rpg~p~v~~l~dG~l~l~y~~~~~~~~~~~~~~~~~~iS~DG-~tw~~ 250 (355)
T 3a72_A 202 TDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLSSDP-ENIAS 250 (355)
T ss_dssp TCEEEEEEEEECTTSCEEEEEEEEBCTTSSSCBCBEEEEEESST-TCCTT
T ss_pred CCCCCceEEEECCCCCEEEEEEECCCcccCCCceeEEEEECCCc-ccccC
Confidence 11 2566654 8999999864321 111234444 57762 24543
|
| >4hbs_A Putative hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.80A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.33 E-value=2.2 Score=43.80 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=54.8
Q ss_pred ceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCC--c---cc------cEEEe------------e-cCceeeeeEEEEE
Q 012300 284 MTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLD--V---SN------VVRRI------------L-VGQHREAPALFKH 339 (466)
Q Consensus 284 p~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~--~---~g------~~~~i------------~-~g~~~EgP~ifK~ 339 (466)
.++++++||-.|| |+.. ++.+++++...+-+. + .| ..+.- . .....+.+++.++
T Consensus 226 ~~~~~~~DGyvY~-YGT~-~gr~~lARV~~~dl~~~yeYw~g~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (416)
T 4hbs_A 226 DTMWEDEDGHIYL-YTTS-NYKVAVARTATRDLGSQWEYYVADPQGHFSWTTQYPSTQDAENSTIIPLESACSMPWVFKK 303 (416)
T ss_dssp SEEEECTTSCEEE-EEEE-TTEEEEEEESSSCTTSCEEEEEECTTSCEEEESSCCCHHHHHHTCSSCTTCCCEEEEEEEE
T ss_pred ceeEeCCCceEEE-EeCC-CCCEEEEEecCccccccceEEcCccccCCCCccCCccccccccccccccccccceEEEEcc
Confidence 3688888998887 4655 467888888654221 0 11 11100 0 0124567788899
Q ss_pred CCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCC
Q 012300 340 LGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMG 374 (466)
Q Consensus 340 ~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~g 374 (466)
.++|+|++.... .+ +..+.++|++|.|||+...
T Consensus 304 ~~~yv~~~~~~~-~~-~~I~~~tA~sP~GPWs~p~ 336 (416)
T 4hbs_A 304 GDTYYMIGQSMW-FG-RDVLMFRSKHPYGPFVDQK 336 (416)
T ss_dssp TTEEEEEEECTT-TC-SEEEEEEESSSSSCCEEEE
T ss_pred CCEEEEEEeCCC-CC-CCEEEEECCCCCCCCCCCE
Confidence 999999997532 11 2334457999999999764
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=94.06 E-value=4.6 Score=40.65 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=87.6
Q ss_pred cEEEEEeCCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEc------cCCEEEEEEEEeCCCCCcceEEEEEeC
Q 012300 190 GVGCYSSKDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYND------RTGKYVMWMHIDDCNYTKAAVGVAISD 262 (466)
Q Consensus 190 gi~v~sS~DL-v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~------~~GkYyly~s~~~~~~~~~~IGVA~Sd 262 (466)
.+.+++|+|. .+|+....+.+... .-..++.|.++..+ .+|+-++.+.....+....+|.+..|+
T Consensus 56 ~~~v~rS~DgG~TW~~~~~v~~~~~--------g~~~~~~P~l~~lP~~i~~~~~G~lL~~~~s~~~d~~~~~i~v~~S~ 127 (367)
T 2ydt_A 56 WFPIVKSKDGGKTWKEISKVKDTQN--------NWGLRYQPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASR 127 (367)
T ss_dssp CEEEEEESSTTSSCEEEEEECCCSS--------SSCEEEEEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEES
T ss_pred EEEEEEECCCCcCcCcCcccCCCCC--------CcccccCCeEEEccccccccCCCcEEEEEecccCCCCCCeEEEEEEC
Confidence 4789999885 68999876543211 11234577766533 267766554433222234678899998
Q ss_pred CCCCCceecccc----CC---CCC-CccCceEEEcCCCcEEEEEEecC----CCcEEEEEcCCCCCCccccEEEeecCce
Q 012300 263 YPTGPFDYLYSK----RP---HGF-DSRDMTIFKDDDGVAYLVYSSED----NSELHIGPLTSDYLDVSNVVRRILVGQH 330 (466)
Q Consensus 263 sP~GPf~~~~~~----~p---~g~-~~iDp~vF~DdDG~~YL~~g~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~g~~ 330 (466)
+---.|+..... .+ .|. ..++| +.+..+|+..++|.... ++...+...+.|..++......+.....
T Consensus 128 D~G~TW~~~~~i~~g~~~~~~~g~~~v~eP-~~~~~~G~l~v~~~d~~~~~~~~q~l~~~~S~DG~TWs~~~~~~~~~~~ 206 (367)
T 2ydt_A 128 DKGYTWEFVSHVALGGEALPNPGLTPVWEP-FLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKVVDDTKYANY 206 (367)
T ss_dssp SSSSCCEEEEEEEEESCSSCCTTCCCEEEE-EEEEETTEEEEEEEECCSTTTCSSEEEEEEESSSSSCCCCEEEECCSST
T ss_pred CCCCCCcCCeecccCCCcccccCCCccccc-eEECCCCcEEEEECCCCCCCCCCcEEEEEECCCCCCCCCceeccccCCc
Confidence 865678865321 11 121 23467 44567899998887642 2344556678888777544322211111
Q ss_pred --eee-eEEEEE-CCEEEEEEeCC
Q 012300 331 --REA-PALFKH-LGTYYMVTSGC 350 (466)
Q Consensus 331 --~Eg-P~ifK~-~G~YYL~yS~~ 350 (466)
..| |.+.+. +|+++|.|..+
T Consensus 207 ~~rpg~p~v~~l~dG~l~~~y~~~ 230 (367)
T 2ydt_A 207 YARPGMPTVAKLPNNEYIYVYEYG 230 (367)
T ss_dssp TCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCCcceEEECCCCcEEEEEEec
Confidence 112 445443 89999999753
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=3.9 Score=40.95 Aligned_cols=173 Identities=17% Similarity=0.224 Sum_probs=98.2
Q ss_pred cEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-CCcceEEEEEeCCCCCC
Q 012300 190 GVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-YTKAAVGVAISDYPTGP 267 (466)
Q Consensus 190 gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~-~~~~~IGVA~SdsP~GP 267 (466)
.+.++.|+| ..+|+....+.......+ ......+|-|-++ ..+|+.+++|+....+ ...+.+.+++|++ --.
T Consensus 115 ~~~v~~S~D~G~TW~~~~~i~~~~~~~~---~~g~~~v~eP~~~--~~~G~l~~~~~~~~~~~~~~~~~~~~~S~D-G~T 188 (355)
T 3a72_A 115 DIVLYASQDDGMTWDFVSHIAAGGEARP---NNGLTPVWEPFLL--ANKGKLICYYSDQRDNATYGQTMVHQVTND-LKN 188 (355)
T ss_dssp EEEEEEESSTTSCCEEEEEEEEESCSSC---CTTCCCEEEEEEE--EETTEEEEEEEECCCTTTCSCEEEEEEESS-SSS
T ss_pred eEEEEEECCCCccCccCccccccCcccc---ccCCCccccceEE--ccCCeEEEEECCCCCCCCCCcEEEEEECCC-CCC
Confidence 467888877 578999876543221111 0012358888444 3789999999754211 1346688889988 456
Q ss_pred ceecccc-CCCCCCccC--ceEEEcCCCcEEEEEEecCC----C--cEEEEEcCCCCCCccccE-EEeec--C-ceeeee
Q 012300 268 FDYLYSK-RPHGFDSRD--MTIFKDDDGVAYLVYSSEDN----S--ELHIGPLTSDYLDVSNVV-RRILV--G-QHREAP 334 (466)
Q Consensus 268 f~~~~~~-~p~g~~~iD--p~vF~DdDG~~YL~~g~~~n----~--~i~i~~Ls~D~~~~~g~~-~~i~~--g-~~~EgP 334 (466)
|...... .+.....++ |.|.+-.||+..|.|..... + .....++++|..++.... ..+.. + ....+|
T Consensus 189 Ws~~~~~~~~~~~~~rpg~p~v~~l~dG~l~l~y~~~~~~~~~~~~~~~~~~iS~DG~tw~~~~~~~~~~~~~~~~~g~p 268 (355)
T 3a72_A 189 WGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLSSDPENIASAPGQRLVVSSGTQPTSSP 268 (355)
T ss_dssp CCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEEBCTTSSSCBCBEEEEEESSTTCCTTSCCEECCBTTCCCCBSSC
T ss_pred CCCCeeccccCccCCCCCceEEEECCCCCEEEEEEECCCcccCCCceeEEEEECCCcccccCcCCcceecCCCcccCCCC
Confidence 7643221 111111111 45667789999999876421 1 234567788876664321 22221 1 257888
Q ss_pred EEEEE-----CCEEEEEEeCCCCCCCCcEEEEEeCCCC-CCceeCCC
Q 012300 335 ALFKH-----LGTYYMVTSGCTGWAPNEALVHAAESIM-GPWEDMGN 375 (466)
Q Consensus 335 ~ifK~-----~G~YYL~yS~~tg~~~n~~v~~~Sds~~-GPw~~~gn 375 (466)
.|... +|.-++.+. +....+++++-- +.|+....
T Consensus 269 ~v~~~~~gg~~g~ll~s~~-------~~~~v~~s~~~g~~~W~~~~~ 308 (355)
T 3a72_A 269 YAVWTPYGGENGTIIVSSG-------TQGTLFINKALGEGEWTEIPC 308 (355)
T ss_dssp EEEEESTTSTTCEEEEECS-------SCSSEEEESSTTCSCBEEECC
T ss_pred eEEECcCCCCCCeEEEEcC-------CCcEEEEECCCCCCCCeECCC
Confidence 77663 566665542 122244555544 89987653
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=91.95 E-value=11 Score=37.79 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=99.1
Q ss_pred cEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-CCCcceEEEEEeCCCCCC
Q 012300 190 GVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-NYTKAAVGVAISDYPTGP 267 (466)
Q Consensus 190 gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-~~~~~~IGVA~SdsP~GP 267 (466)
.+.++.|+| ..+|+....+.......+ ......+|-|-++ ..+|+.++||+.... ....+.+.+++|++ --.
T Consensus 120 ~i~v~~S~D~G~TW~~~~~i~~g~~~~~---~~g~~~v~eP~~~--~~~G~l~v~~~d~~~~~~~~q~l~~~~S~D-G~T 193 (367)
T 2ydt_A 120 LIEVYASRDKGYTWEFVSHVALGGEALP---NPGLTPVWEPFLM--TYKEKLILYYSDQRDNATHSQKLVHQTTTD-LKK 193 (367)
T ss_dssp EEEEEEESSSSSCCEEEEEEEEESCSSC---CTTCCCEEEEEEE--EETTEEEEEEEECCSTTTCSSEEEEEEESS-SSS
T ss_pred eEEEEEECCCCCCCcCCeecccCCCccc---ccCCCccccceEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCC-CCC
Confidence 477888887 578999876543221111 0112458999333 478999998876432 12346688889998 356
Q ss_pred ceeccccCC-CCCCccC--ceEEEcCCCcEEEEEEecCC---------CcEEEEEcCCCCCCccccE-EEeecC---cee
Q 012300 268 FDYLYSKRP-HGFDSRD--MTIFKDDDGVAYLVYSSEDN---------SELHIGPLTSDYLDVSNVV-RRILVG---QHR 331 (466)
Q Consensus 268 f~~~~~~~p-~g~~~iD--p~vF~DdDG~~YL~~g~~~n---------~~i~i~~Ls~D~~~~~g~~-~~i~~g---~~~ 331 (466)
|+....... .....++ |.+.+..||+++|.|..... ......++++|..++.... ..+... ...
T Consensus 194 Ws~~~~~~~~~~~~~rpg~p~v~~l~dG~l~~~y~~~~~~~~~~~~~~~~~~~~~~S~DG~tw~~~~~~~l~~~~~~~~~ 273 (367)
T 2ydt_A 194 WSKVVDDTKYANYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFPVYYRLSKDPQKFLNKAHHQIVSNDGTTPA 273 (367)
T ss_dssp CCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEETCSCCCTTCSCCCBEEEEEESSTTCCTTSCCEECCCTTCCCCB
T ss_pred CCCceeccccCCcCCCCCcceEEECCCCcEEEEEEecCCCCcccccccccceEEEEcCCccccCCcCCceeecCCCcccC
Confidence 765322111 1122233 45667789999999875321 1234567788887765432 233221 235
Q ss_pred eeeEEEEE-----CCEEEEEEeCCCCCCCCcEEEEEeCCC-C-CCceeCCCc
Q 012300 332 EAPALFKH-----LGTYYMVTSGCTGWAPNEALVHAAESI-M-GPWEDMGNP 376 (466)
Q Consensus 332 EgP~ifK~-----~G~YYL~yS~~tg~~~n~~v~~~Sds~-~-GPw~~~gnP 376 (466)
=+|.|... +|+-++.+. . ....+++++- . |.|+....|
T Consensus 274 ~sp~v~~~p~~~~~g~l~~s~~--~-----~~~v~~~~~~g~~~~W~~~~~~ 318 (367)
T 2ydt_A 274 GSPYVVWTPYGGKNGTIVVSCG--T-----RSEIFTNQALGDASAWKKWDVP 318 (367)
T ss_dssp SSCEEEEESTTSTTCEEEEECS--S-----CSCEEEESSTTCTTCCEEECCS
T ss_pred cCceEEECcCCCCCCeEEEEcC--C-----CceEEEECCCCCCCcceeccCC
Confidence 67788774 576666543 1 1123444332 2 689986443
|
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=81.47 E-value=56 Score=34.29 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=81.9
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccce----eccCcEEEEEeC-CCCCCEEeceeccCC-CcccccccCCCCe
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAAR----VDIIGVGCYSSK-DMWTWKNEGIVLAAE-ETNETHDLYKLNV 225 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~----~~~~gi~v~sS~-DLv~W~~~g~vL~~~-~~~~~~~~~~~~~ 225 (466)
+|+++.++.+|+-|++.+...+......|.++.. .....+.+..|+ |..+|+....+.... ...|. ..
T Consensus 250 nP~lvvD~~tG~I~L~~~~~~g~~~~~~w~~~~~g~~~~~t~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~------~~ 323 (523)
T 4fj6_A 250 DPSILVDEKTNTIWVVAAWTHGMGNERAWWNSMPGMTPDETAQLMLVKSEDDGKTWSEPINITSQVKDPSWY------FL 323 (523)
T ss_dssp EEEEEECTTTCCEEEEEEECCSCTTSCGGGTCCSSSSTTTSCEEEEEEESSTTSSCCCCEECHHHHCCTTCS------EE
T ss_pred CceEEEECCCCeEEEEEEecccccccccccccccCCCCCcceEEEEEEcCCCCccCCCCeeecccccCCcce------EE
Confidence 5788888778999998765322100111211100 001124444555 578998864432211 11111 00
Q ss_pred eeec-e-EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCC
Q 012300 226 LERP-K-VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 226 iWAP-~-viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
+=+| . |. -.+|+.++=......+ +.....+..|++---.|+..... + ...++|.++.-+||+.+|.......
T Consensus 324 ~~g~G~GI~--l~dGrLv~P~~~~~~~-g~~~s~i~~S~D~G~TW~~~~~~-~--~~~~e~~vve~~dG~L~~~~R~~~~ 397 (523)
T 4fj6_A 324 LQGPGRGIT--MQDGTLVFPIQFIDAT-RVPNAGIMYSKDRGKTWHLHNLA-R--TNTTEAQVAEVEPGVLMLNMRDNRG 397 (523)
T ss_dssp EECSEECEE--CTTSCEEEEEEEECTT-SCEEEEEEEESSTTSSCEECCCS-E--ETEEEEEEEEEETTEEEEEEEETTC
T ss_pred ecCCCcceE--EeCCeEEEEEEEEcCC-CCEEEEEEEECCCCCeEEECCCC-C--ccccCCEEEEecCCEEEEEEEecCC
Confidence 0011 1 33 2688876543333222 23455677888754568864321 1 2378999998789999997765433
Q ss_pred CcEEEEEcCCCCCCccc
Q 012300 304 SELHIGPLTSDYLDVSN 320 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g 320 (466)
+...+.+-.+...++..
T Consensus 398 g~r~v~~S~D~G~TWt~ 414 (523)
T 4fj6_A 398 GSRAVATTKDLGKTWTE 414 (523)
T ss_dssp SBCEEEEESSTTSSCEE
T ss_pred CcEEEEEECCCCCccCc
Confidence 44556665555566653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 466 | ||||
| d1y7ba2 | 321 | b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal do | 7e-15 | |
| d2exha2 | 322 | b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal do | 2e-14 | |
| d1uv4a1 | 291 | b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus | 6e-14 | |
| d1yrza2 | 317 | b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-termina | 7e-14 | |
| d1wl7a1 | 312 | b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermo | 5e-13 | |
| d1gyha_ | 318 | b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cell | 1e-11 | |
| d1oyga_ | 440 | b.67.2.2 (A:) Levansucrase {Bacillus subtilis [Tax | 2e-04 |
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 321 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Score = 73.1 bits (178), Expect = 7e-15
Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 14/200 (7%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYND-RTGKYVMWMHIDD 248
GV + SKD+ W L + + P + Y+D + + + D
Sbjct: 34 GVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTD 93
Query: 249 CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHI 308
+ + + G + + GF D ++F D+DG YLV D +
Sbjct: 94 GMWKDCHNYLTTCESVDGVWSDPITLNGSGF---DASLFHDNDGKKYLVNMYWDQRTYNH 150
Query: 309 G----------PLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEA 358
+ + ++ + ++ E P ++ YY+ T+ +
Sbjct: 151 NFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSE 210
Query: 359 LVHAAESIMGPWEDMGNPCI 378
V +++I GP+E +
Sbjct: 211 TVARSKNIDGPYEIDPEYPL 230
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} Length = 322 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Score = 71.9 bits (175), Expect = 2e-14
Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 18/202 (8%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMW---MHI 246
GV Y SKD+ W+ L + P + Y+D GK+ + + +
Sbjct: 35 GVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSD--GKFWLIYTDVKV 92
Query: 247 DDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 306
+ + + D G + GFD ++F D+DG YLV D+
Sbjct: 93 VEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFD---PSLFHDEDGRKYLVNMYWDHRVD 149
Query: 307 HIGPLTSDYLDVSN----------VVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPN 356
H + S ++ + + E P L+K G YY++T+ +
Sbjct: 150 HHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNH 209
Query: 357 EALVHAAESIMGPWEDMGNPCI 378
A + + S+ GP+E + +
Sbjct: 210 AATIARSTSLYGPYEVHPDNPL 231
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} Length = 291 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Score = 70.0 bits (170), Expect = 6e-14
Identities = 43/253 (16%), Positives = 87/253 (34%), Gaps = 18/253 (7%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKL-NVLERPKVIYNDRTGKYVMWMHIDD 248
G+ S D W + + + ++ + P + Y + GKY ++ +
Sbjct: 34 GLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYYN--GKYWLYYSVSS 91
Query: 249 CNYTKAAVGVAISDY-PTGPFD----YLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303
+A+G+A S +G + + S + +++ D + D DG +L + S +
Sbjct: 92 FGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSFWS 151
Query: 304 SELHIGP---LTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSG---CTGWAPNE 357
+ ++ R G EAP L G YY++ S C G
Sbjct: 152 GIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTY 211
Query: 358 ALVHA-AESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNP 415
+ + ++SI GP+ D G + G + + I + ++
Sbjct: 212 KIAYGRSKSITGPYLDKSGKSMLEGGGTILDSG--NDQWKGPGGQDIVNGNILVRHAYDA 269
Query: 416 ADLRESRYIWLPL 428
D + + L
Sbjct: 270 NDNGIPKLLINDL 282
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Score = 70.0 bits (170), Expect = 7e-14
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 14/198 (7%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYND-RTGKYVMWMHIDD 248
GV + S+D+ W+ L + + P + Y+D +
Sbjct: 35 GVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSYHDGTFYLIYTDVKQWH 94
Query: 249 CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHI 308
+ A + + GP+ GF D ++F DDDG +LV D + +
Sbjct: 95 GAFKDAHNYLVTAQNIEGPWSDPIYLNSSGF---DPSLFHDDDGRKWLVNMIWDYRKGNH 151
Query: 309 GP-------LTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEA 358
+ + V+ I G Q E P L+K G YY++ + + A
Sbjct: 152 PFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAA 211
Query: 359 LVHAAESIMGPWEDMGNP 376
+ ++SI GP+E +
Sbjct: 212 TLARSQSIDGPYETDPSY 229
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Length = 312 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Score = 67.3 bits (163), Expect = 5e-13
Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 49/272 (18%)
Query: 128 GNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVD 187
GN +FY + D + AH I + ++ +
Sbjct: 7 GNVNFYEMDWSLKGD-----LWAHDPVIAKEGS--RWYVFHTGS---------------- 43
Query: 188 IIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL--YKLNVLERPKVIYNDRTGKYVMWMH 245
G+ +S+D W+N G V + + + L P + + + G Y ++
Sbjct: 44 --GIQIKTSEDGVHWENMGRVFPSLPDWCKQYVPEKDEDHLWAPDICFYN--GIYYLYYS 99
Query: 246 IDDCNYTKAAVGVAI--SDYPTGPFD-------YLYSKRPHGFDSRDMTIFKDDDGVAYL 296
+ + +G+A + P P ++S +++ D + D +G +L
Sbjct: 100 VSTFGKNTSVIGLATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWL 159
Query: 297 VYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQH------REAPALFKHLGTYYMVTSG- 349
+ S S + + L ++ + + + + EAP + G YY+ S
Sbjct: 160 SFGS-FWSGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFD 218
Query: 350 --CTGWAPNEALVHA-AESIMGPWEDMGNPCI 378
C G + ++ I GP+ D +
Sbjct: 219 FCCRGIESTYKIAVGRSKDITGPYVDKNGVSM 250
|
| >d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} Length = 318 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: alpha-L-arabinanase species: Cellvibrio cellulosa [TaxId: 155077]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 43/272 (15%), Positives = 73/272 (26%), Gaps = 37/272 (13%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETH-DLYKLNVLERPKVIYNDRTGKYVMWMHIDD 248
G+ YSSKD W+ A E T L P + + +
Sbjct: 27 GITIYSSKDRVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGLFYLYYSVSAFG 86
Query: 249 CNYTKAAVGVAISDYPTG--------PFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
N + V V + P + +++ I DD G ++ + S
Sbjct: 87 KNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGS 146
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVG---------------QHREAPALFKHLGTYYM 345
L + L D + + EAP + + YY+
Sbjct: 147 FWGG-LKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYL 205
Query: 346 VTS----GCTGWAPNEALVHAAESIMGPWED-MGNPCIGGNKVFRLTTFFAQSTYVIP-- 398
S G + +V ++ + GP+ D G G +V
Sbjct: 206 FASWGLCCRKGDSTYHLVVGRSKQVTGPYLDKTGRDMNQGGGSL---LIKGNKRWVGLGH 262
Query: 399 --LAGLPGLYIFMADRWNPADLRESRYIWLPL 428
G + + AD + L L
Sbjct: 263 NSAYTWDGKDYLVLHAYEAADNYLQKLKILNL 294
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} Length = 440 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Score = 41.2 bits (96), Expect = 2e-04
Identities = 36/287 (12%), Positives = 77/287 (26%), Gaps = 53/287 (18%)
Query: 126 DNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYK-----DGPTYHAHK 180
+ +Y + + + S +YK DG TY +
Sbjct: 137 TSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQ 196
Query: 181 KAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 240
+ I G YSS D T ++ P + +
Sbjct: 197 Q------FIDEGNYSSGDNHTLRD------------------------PHYVEDKGHKYL 226
Query: 241 VMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS 300
V + + + + Y + + S + +G ++ +
Sbjct: 227 VFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELN 286
Query: 301 EDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTS--GCTGWAPNEA 358
+D + + ++ V E +FK G +Y+ T G
Sbjct: 287 DDYTLKKVMK---------PLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTIDGIT 337
Query: 359 ------LVHAAESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP 398
L + + S+ GP++ + + + F S + +P
Sbjct: 338 SNDIYMLGYVSNSLTGPYKPLNKTGLVLKMDLDPNDVTFTYSHFAVP 384
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 100.0 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 100.0 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 100.0 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 100.0 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 100.0 | |
| d1gyha_ | 318 | alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: | 100.0 | |
| d1oyga_ | 440 | Levansucrase {Bacillus subtilis [TaxId: 1423]} | 99.72 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 99.49 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 99.41 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 99.41 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 99.41 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 99.39 | |
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 99.23 | |
| d1gyha_ | 318 | alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: | 99.16 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 99.15 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 98.95 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 98.76 | |
| d1oyga_ | 440 | Levansucrase {Bacillus subtilis [TaxId: 1423]} | 98.59 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 98.41 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 98.25 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 82.27 |
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.9e-40 Score=324.67 Aligned_cols=258 Identities=17% Similarity=0.226 Sum_probs=191.7
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccccc-CCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL-YKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~-~~~~~iWA 228 (466)
.|||+|++. +|+||||+|... ..+++.|++|+||+||+.++.+++.....+.... ..++.+||
T Consensus 10 ihDP~vi~~--~g~YY~~~t~~~--------------~~~g~~i~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WA 73 (291)
T d1uv4a1 10 LHDPTMIKE--GSSWYALGTGLT--------------EERGLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWA 73 (291)
T ss_dssp CSSCEEEEE--TTEEEEEEECCT--------------TSSBEEEEEESSSSSCEEEEEETSSCCGGGGGTSTTCCSBCEE
T ss_pred ccCCEEEEE--CCEEEEEEecCC--------------CCCcEEEEECCCCCCCEECcccccCCcccccccCCccCCcccc
Confidence 499999986 599999998532 2457999999999999999999887654432211 12467999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC-CCCCceecccc----CCCCCCccCceEEEcCCCcEEEEEEecCC
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY-PTGPFDYLYSK----RPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds-P~GPf~~~~~~----~p~g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
|+|++ .+|+|||||++...+....+|+||+|++ |.|||++.+.. ...+..+|||+||+|+||+.||+|++..
T Consensus 74 P~v~~--~~g~yylyy~~~~~~~~~~~i~~a~s~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Y~~~~~~~- 150 (291)
T d1uv4a1 74 PDIQY--YNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSFW- 150 (291)
T ss_dssp EEEEE--ETTEEEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBST-
T ss_pred eEEEE--ECCEEEEEEEecCCCCCcceEEEEEeCCCCCCCCCcCccccccccCCCCCccCceEEEecCCcEEEEecccC-
Confidence 99998 7899999999876655678999999998 78999975421 2345678999999999999999998754
Q ss_pred CcEEEEEcCCCCCCccccEEEeec----CceeeeeEEEEECCEEEEEEeCCCC---CCCCcEEE-EEeCCCCCCceeC-C
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILV----GQHREAPALFKHLGTYYMVTSGCTG---WAPNEALV-HAAESIMGPWEDM-G 374 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~----g~~~EgP~ifK~~G~YYL~yS~~tg---~~~n~~v~-~~Sds~~GPw~~~-g 374 (466)
+.|++++|++|++.+.++...+.. +..+|||.|+|++|+|||+||..++ ...+|.+. ++|++|+|||++. +
T Consensus 151 ~~i~i~~l~~~~~~~~g~~~~i~~~~~~~~~~EgP~i~k~~g~Yyl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~~ 230 (291)
T d1uv4a1 151 SGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDKSG 230 (291)
T ss_dssp TCEEEEEECTTTCSEEEEEEEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBCTTS
T ss_pred CceEEEeeccccccCcCceeEEEecCCCCccccccEEEEECCEEEEEEecCcccCCCCCCceeEEEEcCCCCCCCccCCC
Confidence 579999999999988888777653 4579999999999999999995432 34456665 4899999999988 6
Q ss_pred CccccCCcccee----eccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 375 NPCIGGNKVFRL----TTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 375 nPi~~~~~~~~~----~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
+|++.+...+.. .-++.+|..++. ++|++||- +.......++..+.||.|++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~gpgh~~~~~-----~~~~~yH~-~~~~~~~~r~~~~~~l~w~d 286 (291)
T d1uv4a1 231 KSMLEGGGTILDSGNDQWKGPGGQDIVN-----GNILVRHA-YDANDNGIPKLLINDLNWSS 286 (291)
T ss_dssp CBGGGTCCEEEECCCSSEEEEEEEEEET-----TTEEEEEE-EETTTTTEEEEEEEECBCTT
T ss_pred CceecCCCeeeecCCCCEEeCCCcCeec-----CCEEEEEe-eeCCCCCeEEEEEEEEEEEC
Confidence 787754321111 112223334442 45777774 44433333334568999954
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=2.7e-38 Score=314.36 Aligned_cols=266 Identities=18% Similarity=0.167 Sum_probs=192.2
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+. -||.|++. +|+||||+|... ..+++.||+|+||+||+.++.+|.............
T Consensus 4 NPv~~~~~aDP~vi~~--~~~yY~~~tt~~--------------~~~gi~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~ 67 (317)
T d1yrza2 4 NPILPGFHPDPSIVRV--GDDYYIATSTFE--------------WFPGVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMN 67 (317)
T ss_dssp SCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECSBCSTTTCCCTTCCT
T ss_pred CCCCCCCCCCCEEEEE--CCEEEEEEccCC--------------CCCCeEEEECCCCCCCeECCccccCccccccCCCcc
Confidence 56654 28899986 489999998532 246799999999999999999987654322222234
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
.+.+|||+|++ .+|+|||||++... ......+++++|++|+|||++... .....|||++|+|+||+.||+|+
T Consensus 68 ~~~~WAP~v~~--~~G~~ylyy~~~~~~~~~~~~~~~~~~~a~~p~gp~~~~~~---~~~~~iDp~~f~D~dG~~Yl~~~ 142 (317)
T d1yrza2 68 SGGIWAPCLSY--HDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIY---LNSSGFDPSLFHDDDGRKWLVNM 142 (317)
T ss_dssp TCEECSCEEEE--ETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEE---CCCSCSCCEEEECTTSCEEEEEE
T ss_pred cceeecceEEE--ECCEEEEEEEEeccCCCCcccceEEEEecCCCCCCccceee---ecCCccCCcEEEecCCCEEEEEe
Confidence 67899999998 89999999987532 234567899999999999987542 24568999999999999999999
Q ss_pred ecCC-------CcEEEEEcCCCCCCccccEEEeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCC
Q 012300 300 SEDN-------SELHIGPLTSDYLDVSNVVRRILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMG 368 (466)
Q Consensus 300 ~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~G 368 (466)
.+.. ..+.+.++++++..+.++...+.. ....|||+|+|+||+|||+||...... +|.+. ++|++|+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~yyl~~s~~~~~~-~y~v~~~~s~~~~G 221 (317)
T d1yrza2 143 IWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEY-EHAATLARSQSIDG 221 (317)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSST-TCEEEEEEESSTTC
T ss_pred ccCcCCCCccccceeeeecCcccCeEcCCceEEEeccCCCcccCceEEEECCEEEEEEccCCCCC-cceEEEEEECCCCC
Confidence 8642 246778888888887777766654 357899999999999999999654333 46655 58999999
Q ss_pred CceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEe-CCCC-CCCCee-EEEEEEEcCCCCC
Q 012300 369 PWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRW-NPAD-LRESRY-IWLPLIVRGPADR 436 (466)
Q Consensus 369 Pw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w-~~~~-~~~~R~-v~lPl~~~~~~~~ 436 (466)
||+.. ++|++...........+.+|+++++.++. +||++||..- ...+ ....|. .++||.|++ |+
T Consensus 222 p~~~~~~~p~~~~~~~~~~~~~g~GH~s~~~~~dG-~~~~~~h~~~~~~~~~~~~~R~~~i~~~~w~~--DG 290 (317)
T d1yrza2 222 PYETDPSYPLVTSTGQPELALQKAGHGSLVETQNG-EWYLAHLCGRPLKGKYCTLGRETAIQKVNWTE--DG 290 (317)
T ss_dssp CCEECTTCCSEECTTCTTCSSEEEEEEEEEECTTS-CEEEEEEEECCBTTTBCTTCSEEEEEEEEECT--TS
T ss_pred ccccCCCcceeccCCCCcCCcccCCccEEEECCCC-eEEEEEEEeeCCCCCccCCccEEEEEEEEECC--CC
Confidence 99988 67877432211122234456666665442 6777776432 2222 222366 568999986 55
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=3.4e-38 Score=314.79 Aligned_cols=264 Identities=18% Similarity=0.165 Sum_probs=192.7
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+. -||.|++. +++||||+|... ..+++.|++|+||+||+.++.+|...+.........
T Consensus 4 NPi~~~~~aDP~v~~~--~~~yY~~~tt~~--------------~~~g~~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~ 67 (322)
T d2exha2 4 NPILTGFHPDPSICRV--GDDYYIAVSTFE--------------WFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPD 67 (322)
T ss_dssp SCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECCBCSTTTCCCTTCCT
T ss_pred CCCCCCCCCCCEEEEE--CCEEEEEEcCCC--------------CCCCcEEEECCCcCCcEEcccccccccccccCCCcc
Confidence 56653 38899986 489999998532 246799999999999999999987654322112234
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
.+.+|||+|++ ++|+|||||++.... .....+++++|++|+|||++... .....|||++|+|+||+.||+|+
T Consensus 68 ~~~~WAPev~~--~~G~yylyys~~~~~~~~~~~~~~~~~~sd~~~gp~~~~~~---~~~~~~dp~~f~d~dG~~Yl~~~ 142 (322)
T d2exha2 68 SGGVWAPHLSY--SDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIY---LNSSGFDPSLFHDEDGRKYLVNM 142 (322)
T ss_dssp TCBBCSCEEEE--ETTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEE---CCCSCSCCEEEECTTSCEEEEEE
T ss_pred cCCcccceEEE--ECCEEEEEEEeecccCCCccccceEEEecCCCCCCcccceE---ecCCCCCCCeEEEcCCCEEEEec
Confidence 56799999998 799999999876432 23467889999999999997542 23457999999999999999999
Q ss_pred ecCCC-------cEEEEEcCCCCCCccccEEEeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCC
Q 012300 300 SEDNS-------ELHIGPLTSDYLDVSNVVRRILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMG 368 (466)
Q Consensus 300 ~~~n~-------~i~i~~Ls~D~~~~~g~~~~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~G 368 (466)
.+.+. .+.+.+++.++.++.++...+.. ....|||+|+|++|+|||+||.+.+. .+|.+. ++|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~YYl~~s~~~~~-~~y~v~~~rS~~~~G 221 (322)
T d2exha2 143 YWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTR-YNHAATIARSTSLYG 221 (322)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSS-TTCEEEEEEESSTTC
T ss_pred ccCCccCcCCccceEEeeecCcCCeECCCcEEEEEecCCCcccCcEEEEECCEEEEEEeCCCCC-CCceEEEEEeCCCCc
Confidence 87532 46788999999988888777654 35789999999999999999976543 346655 58999999
Q ss_pred CceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC-----------CCCeeE-EEEEEEcC
Q 012300 369 PWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL-----------RESRYI-WLPLIVRG 432 (466)
Q Consensus 369 Pw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~-----------~~~R~v-~lPl~~~~ 432 (466)
||+.. ++|++...........+.+|++|++.++ .+|||+||.+...... .-.|.+ +.||.|++
T Consensus 222 P~~~~~~~pi~~~~~~~~~~~~g~GH~~~v~~~d-g~w~~~yh~~~~~~~~~~~~~~~~~~~~~GR~~~l~~v~w~d 297 (322)
T d2exha2 222 PYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHT-DEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKD 297 (322)
T ss_dssp CCEECTTCCSEESTTCTTCSSEEEEEEEEEECTT-SCEEEEEEEECCCCCTTSCTTTCCCCCTTCEEEEEEEEEESS
T ss_pred ccccCCCceEeccCCCCCCCccCCCeEEEEECCC-CCEEEEEEEccCCCccccccccccCccccCcEEEEEEEEEEC
Confidence 99987 6888754211111223445667776543 2788888864322111 112774 57999953
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=7.4e-38 Score=310.83 Aligned_cols=278 Identities=15% Similarity=0.081 Sum_probs=199.9
Q ss_pred CeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+. -||+|++. +|+|||++|... .+++|.||+|+||+||+.++.+|+..+.........
T Consensus 3 NPv~~~~~aDP~v~~~--~~~yY~~~tt~~--------------~~~gi~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~ 66 (321)
T d1y7ba2 3 NPILRGFNPDPSICRA--DTDYYIATSTFE--------------WFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPN 66 (321)
T ss_dssp SCSBCSSCCSCEEEEE--TTEEEEEECCBT--------------EESBCEEEEESSSSSCEEEECSBCSTTTCCCTTCCT
T ss_pred CCcCCCCCCCCEEEEE--CCEEEEEEecCC--------------CCCCeEEEECCCccCCEEccccccCCcccccCCCcc
Confidence 56654 38899986 599999998532 246899999999999999999987654322222334
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
.+.+|||+|++ .+|+|||||++.... .....|++|+|++|+|||++.... ....|||++|+|+||+.||+++
T Consensus 67 ~~~~WAP~v~~--~~g~yylyys~~~~~~~~~~~~~~~~a~a~~p~Gp~~~~~~~---~~~~~D~~~~~d~dg~~~~~~~ 141 (321)
T d1y7ba2 67 SGGIWAPDLSY--HDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITL---NGSGFDASLFHDNDGKKYLVNM 141 (321)
T ss_dssp TCEECSCEEEE--ETTEEEEEEEEESCCSSSCCCEEEEEEEESSTTSCCCCCEEC---CCSCSCCEEEECTTSCEEEEEE
T ss_pred cCcccCceEEE--ECCEEEEEEEeeccCCCCccceeeEeeecCCCCCCcccceee---cccccCCcEEEEcCCCEEEEEe
Confidence 67899999998 899999999986532 245789999999999999986533 2357999999999999999998
Q ss_pred ecCC-------CcEEEEEcCCCCCCccccEEEeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCC
Q 012300 300 SEDN-------SELHIGPLTSDYLDVSNVVRRILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGP 369 (466)
Q Consensus 300 ~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GP 369 (466)
.+.. ..+.++++++|+..+.++...+.. ....|||+|||++|+|||++|.+.+.......+++|++++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~yyl~~s~~~~~~~y~~~~~rs~~~~Gp 221 (321)
T d1y7ba2 142 YWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGP 221 (321)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCC
T ss_pred ccCCCccccCccceeeEeeCCCcceEcCCceEEeeccCCCccccceEEEECCEEEEEEcCCCCCCCcceEEEEEcccCCc
Confidence 7642 257889999999998888777654 357899999999999999999765544433344589999999
Q ss_pred ceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC-----------CCCee-EEEEEEEcCCCCC
Q 012300 370 WEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL-----------RESRY-IWLPLIVRGPADR 436 (466)
Q Consensus 370 w~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~-----------~~~R~-v~lPl~~~~~~~~ 436 (466)
|+.. ++|++.....-.....+.+|++|++.++ .+||++||.+...... .-.|. .+.||.|++ +
T Consensus 222 ~~~~~~~p~~~~~~~~~~~~~g~GH~~~v~~~~-g~~~~~~h~~~~~~~~~~~~~~~~~~~~~gR~~~l~~~~w~d---g 297 (321)
T d1y7ba2 222 YEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHT-DEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVD---N 297 (321)
T ss_dssp CEECTTCCSEECTTCTTCSSEEEEEEEEEECTT-SCEEEEEEEECCCCCCSSCTTTCCCCCTTCSEEEEEEEEEET---T
T ss_pred cccCCCCceeeeecCCCCCcccCCEEEEEECCC-CCEEEEEEeecCCCCCCccceecccccccccEEEEEEEEEEC---C
Confidence 9987 7787642110012233445666776544 2788888754322211 11265 568999954 4
Q ss_pred CCccccCCCcccee
Q 012300 437 PLEYNFGFPLWSRV 450 (466)
Q Consensus 437 ~~~~~~~~~~~~~~ 450 (466)
.|.++-+....+
T Consensus 298 --wP~v~~~~~~~~ 309 (321)
T d1y7ba2 298 --WPRVVGGKQGSV 309 (321)
T ss_dssp --EEEETTCTTCCS
T ss_pred --ceEEcCCCCCce
Confidence 455554443333
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=100.00 E-value=8.9e-37 Score=302.10 Aligned_cols=260 Identities=16% Similarity=0.196 Sum_probs=190.7
Q ss_pred CCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccc--ccCC
Q 012300 145 GAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH--DLYK 222 (466)
Q Consensus 145 GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~--~~~~ 222 (466)
|+ |.+|||+|++. +|+||||+|. .+|.||+|+||+||+.++.+|+.....+.. ....
T Consensus 20 ~~-~~~~DP~i~~~--~g~yY~~~t~------------------~gi~i~~S~DL~nW~~~g~~l~~~~~~~~~~~~~~~ 78 (312)
T d1wl7a1 20 GD-LWAHDPVIAKE--GSRWYVFHTG------------------SGIQIKTSEDGVHWENMGRVFPSLPDWCKQYVPEKD 78 (312)
T ss_dssp EC-CBCSSCEEEEE--TTEEEEEESE------------------ETCEEEEESSSSEEEEEEESCSSCCTTHHHHCTTCC
T ss_pred CC-cCcCCCEEEEE--CCEEEEEEec------------------CCceEEEcCCCCCceECcccccCCcccccccCCccc
Confidence 44 67899999986 6999999873 258899999999999999999865443221 1234
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEe-----CCCCCCceecccc----CCCCCCccCceEEEcCCCc
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAIS-----DYPTGPFDYLYSK----RPHGFDSRDMTIFKDDDGV 293 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~S-----dsP~GPf~~~~~~----~p~g~~~iDp~vF~DdDG~ 293 (466)
.+.+|||+|++ .+|+|||||++........++++|++ ++|.+||++.+.. .+.+..+|||++|+|+||+
T Consensus 79 ~~~~WAP~v~~--~~g~yyl~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iD~~~f~d~dG~ 156 (312)
T d1wl7a1 79 EDHLWAPDICF--YNGIYYLYYSVSTFGKNTSVIGLATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQ 156 (312)
T ss_dssp SCEEEEEEEEE--ETTEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSC
T ss_pred CCceEcceEEE--eCCEEEEEEEeecCCcccceeeEEEEecccCCCCccccccccceecCCCCCCCCcCCCceeEccCCc
Confidence 57899999998 78999999998876556678888864 4577888875421 2345678999999999999
Q ss_pred EEEEEEecCCCcEEEEEcCCCCCCccccEEEee------cCceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEe
Q 012300 294 AYLVYSSEDNSELHIGPLTSDYLDVSNVVRRIL------VGQHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAA 363 (466)
Q Consensus 294 ~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~------~g~~~EgP~ifK~~G~YYL~yS~~t---g~~~n~~v~-~~S 363 (466)
.||+|++.. ..+.+++|+.|++.+.++...+. ....+|||+|||++|+|||+||.+. +...++.+. ++|
T Consensus 157 ~y~~~~~~~-~~i~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~EgP~v~k~~g~yYl~ys~~~~~~~~~~~~~~~~a~s 235 (312)
T d1wl7a1 157 PWLSFGSFW-SGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAVGRS 235 (312)
T ss_dssp EEEEECBST-TCEEEEEBCTTTCSBCTTCCCEEEECCSSSSCCEEEEEEEEETTEEEEEEEESCCSSGGGCCCEEEEEEE
T ss_pred EEEeecCCC-CceeEEEEcCcCCcCcCCceEEEecccCCCCCcccccEEEEECCcEEEEEecCCCcCCCCCCceEEEEec
Confidence 999998753 57999999999998877654442 2357899999999999999999533 233456665 589
Q ss_pred CCCCCCceeC-CCccccCCccc-e---eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 364 ESIMGPWEDM-GNPCIGGNKVF-R---LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 364 ds~~GPw~~~-gnPi~~~~~~~-~---~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
++|+|||+.. ++++......+ . ..-++.+|++|+...+ ++|++||.+. ... ...|. .+.||.|++
T Consensus 236 ~~~~GP~~~~~~~~~~~~~~~~~~~~~~~~~gpGH~s~~~~~~--~~~~~yH~~~-~~~-~~~R~~~~~~v~w~~ 306 (312)
T d1wl7a1 236 KDITGPYVDKNGVSMMQGGGTILDAGNDRWIGPGHCAVYFSGV--SAILVNHAYD-ALK-NGEPTLQIRPLYWDD 306 (312)
T ss_dssp SSTTCCCBCTTCCBGGGTCCEEEECCCSSEEEEEEEEEEEETT--EEEEEEEEEE-TTT-TTEEEEEEEECEECT
T ss_pred CCCCcccccCCCCccCcCCCceeecCCCCEEeCCCcEEEEeCC--cEEEEEEeec-CCC-CCcEEEEEEEEEECC
Confidence 9999999987 56665432111 0 1123345667777554 6788887543 332 33465 568999986
|
| >d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: alpha-L-arabinanase species: Cellvibrio cellulosa [TaxId: 155077]
Probab=100.00 E-value=7.7e-35 Score=286.93 Aligned_cols=262 Identities=18% Similarity=0.222 Sum_probs=184.2
Q ss_pred eEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccc-ccCCCCe
Q 012300 147 PIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH-DLYKLNV 225 (466)
Q Consensus 147 pI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~-~~~~~~~ 225 (466)
-|.+|||.|+++ +|+||||+|. .+|.||+|+||+||+.++.+|......+.. .....+.
T Consensus 4 ~~~~~DP~v~~~--~g~yYl~~t~------------------~gi~~~~S~DLvnW~~~g~~~~~~~~~~~~~~~~~~~~ 63 (318)
T d1gyha_ 4 QVDVHDPVMTRE--GDTWYLFSTG------------------PGITIYSSKDRVNWRYSDRAFATEPTWAKRVSPSFDGH 63 (318)
T ss_dssp CCCCSSCEEEEE--TTEEEEEESE------------------ETCEEEEESSSSEEEEEEESSSSCCTTHHHHCTTCCSE
T ss_pred cccCCCCEEEEE--CCEEEEEEee------------------CCEEEEECCCCCCCeECCccccCCccccccCCCcCCCc
Confidence 366899999986 6999999874 258899999999999999998765432211 1123568
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CC---CCceecccc-----CCCCCCccCceEEEcCCCcEE
Q 012300 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PT---GPFDYLYSK-----RPHGFDSRDMTIFKDDDGVAY 295 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~---GPf~~~~~~-----~p~g~~~iDp~vF~DdDG~~Y 295 (466)
+|||+|++ .+|+|||||++...+....++++|+++. |+ ++|+..+.. .......|||+||+|+||+.|
T Consensus 64 ~WAP~v~~--~~g~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~v~~d~dG~~Y 141 (318)
T d1gyha_ 64 LWAPDIYQ--HKGLFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVW 141 (318)
T ss_dssp EEEEEEEE--ETTEEEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEE
T ss_pred eECCEEEE--EcCceEEEEEEecCCCcccceeEEEEeccCCCccccccccCceecccCCCCCCCceEccceEeecCCcEE
Confidence 99999998 8899999999876655567888888764 43 556654321 123356899999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCCCcccc--EEEee-------------cCceeeeeEEEEECCEEEEEEeCCCC---CCCCc
Q 012300 296 LVYSSEDNSELHIGPLTSDYLDVSNV--VRRIL-------------VGQHREAPALFKHLGTYYMVTSGCTG---WAPNE 357 (466)
Q Consensus 296 L~~g~~~n~~i~i~~Ls~D~~~~~g~--~~~i~-------------~g~~~EgP~ifK~~G~YYL~yS~~tg---~~~n~ 357 (466)
|+|++.. ..+.+.+|++++...... ..... .....|||+|||++|+|||+||.... ...+|
T Consensus 142 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~g~yyl~yS~~~~~~~~~~~y 220 (318)
T d1gyha_ 142 MSFGSFW-GGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDSTY 220 (318)
T ss_dssp EEECBST-TCEEEEEBCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEETTEEEEEEEESCCSCGGGCCC
T ss_pred EeccCCC-CCeeeEecCccceeeccccccccccccccceeeccCCCCCceeecCEEEEECCEEEEEEecCCCCCCCcccc
Confidence 9998764 478899999998765432 11110 13478999999999999999995321 22345
Q ss_pred EEE-EEeCCCCCCceeC-CCccccCCccc----eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEc
Q 012300 358 ALV-HAAESIMGPWEDM-GNPCIGGNKVF----RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVR 431 (466)
Q Consensus 358 ~v~-~~Sds~~GPw~~~-gnPi~~~~~~~----~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~ 431 (466)
.+. ++|++|+|||+.. ++++....... ...-.+.+|++|++.+| ++|++||.+... ....++..+.||.|+
T Consensus 221 ~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~GH~s~~~~~g--~~~~~yH~~~~~-~~~~R~~~i~~v~~~ 297 (318)
T d1gyha_ 221 HLVVGRSKQVTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDG--KDYLVLHAYEAA-DNYLQKLKILNLHWD 297 (318)
T ss_dssp EEEEEEESSTTSCCBCTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEETT--EEEEEEEEEEGG-GTTEEEEEEEECEEC
T ss_pred eeeeecccCCCCCcccCCCCccccCCCceeecCCCceEeCCccEEEEeCC--CEEEEEEeEcCC-CCCCcEEEEEEEEEC
Confidence 554 4899999999987 56665321100 01112344566777776 688999865433 223344578999998
Q ss_pred CCCCC
Q 012300 432 GPADR 436 (466)
Q Consensus 432 ~~~~~ 436 (466)
+ |+
T Consensus 298 ~--DG 300 (318)
T d1gyha_ 298 G--EG 300 (318)
T ss_dssp T--TS
T ss_pred C--CC
Confidence 6 55
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=2.7e-16 Score=162.21 Aligned_cols=210 Identities=19% Similarity=0.231 Sum_probs=126.5
Q ss_pred eCCCCCCEEeceeccCCCccccc--ccCCCCeeeeceEEEEccCCEEEEEEEEeCC-CCCcceEEEEE---eCCCCCCce
Q 012300 196 SKDMWTWKNEGIVLAAEETNETH--DLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-NYTKAAVGVAI---SDYPTGPFD 269 (466)
Q Consensus 196 S~DLv~W~~~g~vL~~~~~~~~~--~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-~~~~~~IGVA~---SdsP~GPf~ 269 (466)
|+||.+|++.|.+|+..+..... ........|+.+++. ..+|+++|||++... ..+.++|..++ +.+..+.+-
T Consensus 97 s~dl~~W~~~G~vf~d~~~~~~~~~~~~~~~~eWSGSAv~-~~DG~~~LfYTg~~~~~~~~q~i~~a~~~~~~d~~~~~~ 175 (440)
T d1oyga_ 97 ETSIDSWKNAGRVFKDSDKFDANDSILKDQTQEWSGSATF-TSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNI 175 (440)
T ss_dssp CCSGGGCEEEEESCCTTHHHHTTCTTGGGCCEEEEEEEEE-CTTSCEEEEEEEEEGGGTTEEEEEEEEEEEEECSSCEEE
T ss_pred CCccCCCEECccccCCCccccccccccCCCCccCccceEE-ccCCeEEEEEEeccCCCCCcceEEEEEEEEeecCCccee
Confidence 77899999999999754221110 012345789999997 479999999997532 22334444432 122223221
Q ss_pred ----ecc-ccCCC--------------------CCCccCceEEEcCCCcEEEEEEecC----------------------
Q 012300 270 ----YLY-SKRPH--------------------GFDSRDMTIFKDDDGVAYLVYSSED---------------------- 302 (466)
Q Consensus 270 ----~~~-~~~p~--------------------g~~~iDp~vF~DdDG~~YL~~g~~~---------------------- 302 (466)
... -..|. ....|||.||+| +|+.||++.+..
T Consensus 176 ~~~~~~~~l~~pDG~~Yqt~~q~~~~~~~~~~d~~~fRDP~v~~~-~g~~y~~fegn~~~~~G~~g~~~~~~~~~~g~~~ 254 (440)
T d1oyga_ 176 NGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVED-KGHKYLVFEANTGTEDGYQGEESLFNKAYYGKST 254 (440)
T ss_dssp EEEEEEEEEECCCSSSBCCHHHHHHHTGGGGTCCCCCEEEEEEEE-TTEEEEEEEEEBCTTSCCSSGGGGGBGGGTCSCH
T ss_pred ecccCCceeecCCCccceeeecccccCCCCCCCcccccCCceeee-CCeEEEEEeccccccccccccchhcccccccccc
Confidence 100 01111 135899999986 699999998742
Q ss_pred ----------------------CCcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECCEEEEEEeCC------
Q 012300 303 ----------------------NSELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLGTYYMVTSGC------ 350 (466)
Q Consensus 303 ----------------------n~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~YYL~yS~~------ 350 (466)
|+.|.++++++|++.++-.. .++ .....|+|.|||+||+||||+|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~a~~~ng~I~l~~~s~D~~~We~~~-pLl~a~~v~d~~ErP~I~~~nGKYYLFtss~~~~~a~ 333 (440)
T d1oyga_ 255 SFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKVMK-PLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTI 333 (440)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHCCEEEEEEEECTTSSEEEEEE-EEEECTTTCSCCEEEEEEEETTEEEEEEEEEGGGCCC
T ss_pred ccccccccccccccccccceeccceEEEEEeCCCcccceecC-cceeccCCCCeEECCEEEEECCEEEEEEecccccccC
Confidence 23477889999987654222 222 246789999999999999999731
Q ss_pred CCCC-CCcE-EEEEeCCCCCCceeC-CC-ccccCCccceeeccCCCceEEEcccCCcccEEEEE
Q 012300 351 TGWA-PNEA-LVHAAESIMGPWEDM-GN-PCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMA 410 (466)
Q Consensus 351 tg~~-~n~~-v~~~Sds~~GPw~~~-gn-Pi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~ 410 (466)
.+.. +++. .+++|+++.|||+.. +. .+++.+.-. .....+.++++++ .|..+..|+-.
T Consensus 334 ~~~~~~~~~~~g~Vsdsl~Gpy~PlN~sGlvl~~~~~~-~~~~~~Ys~~~~p-~g~~~~~lv~s 395 (440)
T d1oyga_ 334 DGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLKMDLDP-NDVTFTYSHFAVP-QAKGNNVVITS 395 (440)
T ss_dssp TTCCTTCEEEEEEEESSTTCCCEEGGGTSEEEEECCCT-TCTTCEEEEEEEC-CSSSSEEEEEE
T ss_pred CCcCCCCceEEEEECCCCCCCCeecCCCcceeccCCCC-CcCcccceeEEec-CCCCceEEEEE
Confidence 1222 2333 357899999999876 32 222211000 1122244678888 45445555443
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=1.1e-12 Score=128.25 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-.+..... .| +...+..++|+||+||+.++.||.++. +...+|++++
T Consensus 18 PnG~~~~--~G~yHlfyQ~~P~~~---~~------g~~~WgHa~S~Dlv~W~~~~~al~p~~--------d~~g~~sGsa 78 (294)
T d1uypa2 18 PNGLIFW--KGKYHMFYQYNPRKP---EW------GNICWGHAVSDDLVHWRHLPVALYPDD--------ETHGVFSGSA 78 (294)
T ss_dssp EEEEEEE--TTEEEEEEEEETTSS---SS------CSCEEEEEEESSSSSCEEEEEEECCSS--------TTEEEEEEEE
T ss_pred CccceEE--CCEEEEEEecCCCCC---CC------CCcEEEEEEeCCcCCeEECCccccccc--------CCCCeEEEEE
Confidence 3456665 599999988653211 11 234588899999999999999997643 2457999999
Q ss_pred EEEccCCEEEEEEEEeCC----CCCcceEEEEEeCCCCCCceecccc-----CCCC--CCccCceEEEcCCCcEEEEEEe
Q 012300 232 IYNDRTGKYVMWMHIDDC----NYTKAAVGVAISDYPTGPFDYLYSK-----RPHG--FDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~----~~~~~~IGVA~SdsP~GPf~~~~~~-----~p~g--~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
+. .+|+++++|++... ....+.+.+|+|++ ...|+..... .|.+ ...+||.||.+ +|++||+.++
T Consensus 79 v~--~~g~~~~~yT~~~~~~~~~~~~~~~~~a~s~d-g~~w~k~~~npvi~~~~~~~~~~fRDP~V~~~-~g~w~M~~g~ 154 (294)
T d1uypa2 79 VE--KDGKMFLVYTYYRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNRS-NGEWRMVLGS 154 (294)
T ss_dssp EE--ETTEEEEEEEEEECCCSSCCCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred Ee--cCCeEEEEEEEeeCCCCCCcceeeeEEEECCC-CCceEeecCCceecCCCccCccccCCCccccc-CCEEEEEEEe
Confidence 96 78999998876422 12345677888877 4568754211 1111 24699999985 7899999987
Q ss_pred cCC---CcEEEEEcCCCCCCcc--ccEEEeecCceeeeeEEEEECCEEEEEEeCC
Q 012300 301 EDN---SELHIGPLTSDYLDVS--NVVRRILVGQHREAPALFKHLGTYYMVTSGC 350 (466)
Q Consensus 301 ~~n---~~i~i~~Ls~D~~~~~--g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~ 350 (466)
... +.+.+.+ |+|+.+++ +.......+...|+|.+|+.+++++|++|..
T Consensus 155 ~~~~~~G~i~ly~-S~Dl~~W~~~g~l~~~~~~~~~ECPdlf~l~~~~vl~~s~~ 208 (294)
T d1uypa2 155 GKDEKIGRVLLYT-SDDLFHWKYEGAIFEDETTKEIECPDLVRIGEKDILIYSIT 208 (294)
T ss_dssp EETTTEEEEEEEE-ESSSSSEEEEEEEEEETTCSCEEEEEEEEETTEEEEEEEET
T ss_pred eecCCccEEEEEE-cCCccceeEeccceeCCCCCceeeceEEEeCCeeEEEEEec
Confidence 422 2344444 67888874 3322222346789999999999999999854
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=1.3e-11 Score=122.36 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=127.7
Q ss_pred CceEEECCCCEEEEEEE--eCCCCCccccccccceeccCcEEEEEeCCCCCCEEece-eccCCCcccccccCCCCeeeec
Q 012300 153 GGILYDERSRTYFWYGE--YKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI-VLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 153 ~~Ii~~~~~g~YYlygT--~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~-vL~~~~~~~~~~~~~~~~iWAP 229 (466)
|++++. +|+|||+.. +.++ ...|.++.|+|++||+.... ++...... +......++-|
T Consensus 48 p~~i~~--~g~~~ll~r~~~~~~--------------~~~ig~A~S~DGi~w~~~~~pv~~p~~~~---~~~~~~gv~DP 108 (327)
T d1vkda_ 48 SAVVPY--NGEFVGVFRIDHKNT--------------RPFLHFGRSKDGINWEIEPEEIQWVDVNG---EPFQPSYAYDP 108 (327)
T ss_dssp EEEEEE--TTEEEEEEEEEETTS--------------CEEEEEEEESSSSSCEECSSCCCEECTTS---CBCCCSSEEEE
T ss_pred cEEEEE--CCEEEEEEEecCCCC--------------ceEEEEEEcCCccCCEeCCCCeecCCCCC---cccccCcEEcc
Confidence 456664 599999843 3221 12488899999999997643 22222111 11234568999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcC-CCcEEEEEEecC-----C
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDD-DGVAYLVYSSED-----N 303 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~Dd-DG~~YL~~g~~~-----n 303 (466)
.|++ .+|+|||+|++... ..+|++|+|++.. .|+..+...+ ....|+.+|.+. +|+++|++.-.+ .
T Consensus 109 rv~~--~~d~yym~yt~~~~---~~~i~lA~S~D~~-~w~k~g~~~~--~~~kd~~lfpeki~Gky~ml~Rp~~~~~~~~ 180 (327)
T d1vkda_ 109 RVVK--IEDTYYITFCTDDH---GPTIGVGMTKDFK-TFVRLPNAYV--PFNRNGVLFPRKINGKYVMLNRPSDNGHTPF 180 (327)
T ss_dssp EEEE--ETTEEEEEEEEESS---SEEEEEEEESSSS-SEEEECCSSS--SSEEEEEECSSCBTTBEEEEEEECCSSSCSC
T ss_pred eEEE--ECCEEEEEEEecCC---CcEEEEEEecCcc-hheecCCccC--ccccCceEeeeeccCeEEEEEeeccCCCccc
Confidence 9997 78999999987643 4689999999854 6776553322 246788888764 789888875432 1
Q ss_pred CcEEEEEcCCCCCCccccEEEeecC-------ceee-eeEEEEECCEEEEEEeCCCCCC--CCcEEEEE---eCCCCCCc
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILVG-------QHRE-APALFKHLGTYYMVTSGCTGWA--PNEALVHA---AESIMGPW 370 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~g-------~~~E-gP~ifK~~G~YYL~yS~~tg~~--~n~~v~~~---Sds~~GPw 370 (466)
+.|.++. ++|+..+......+..+ ...+ ||..++.+.-|+|+|.+..... ..|.+++. .++|....
T Consensus 181 ~~I~la~-S~Dl~~W~~~~~v~~~~~~~~wd~~~vG~gpppI~t~~Gwl~iYHgv~~~~~~~~Y~~g~~lld~~dP~kvi 259 (327)
T d1vkda_ 181 GDIFLSE-SPDMIHWGNHRFVLGRSSYNWWENLKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVL 259 (327)
T ss_dssp CCEEEEE-ESSSSCBEEEEEEECCCSSCGGGSSEEEECSCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECSSCTTSEE
T ss_pred ceEEEEc-CCCcccccccceecccCCCCceeeeeecCCCCcEEccCcEEEEEEeccccCCCcEEEEEEEEecCCCCceeE
Confidence 3577776 78888886543333221 2344 6888888888889995432111 12445442 35665555
Q ss_pred eeCCCccccCC
Q 012300 371 EDMGNPCIGGN 381 (466)
Q Consensus 371 ~~~gnPi~~~~ 381 (466)
.....|++..+
T Consensus 260 ~r~~~pil~P~ 270 (327)
T d1vkda_ 260 YRSRYYLLTPE 270 (327)
T ss_dssp EEBSSCSBCCC
T ss_pred EcCCCCeEcCC
Confidence 55577888764
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.41 E-value=2e-12 Score=126.21 Aligned_cols=218 Identities=9% Similarity=0.019 Sum_probs=125.7
Q ss_pred cCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecCc
Q 012300 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGR 138 (466)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg~ 138 (466)
....|+||++||..+.+|+.+-...... ....+..|||+|.+. +-.+.+.|+...............-+..-.|..
T Consensus 36 ~i~~S~DLv~W~~~g~~~~~~~~~~~~~-~~~~~~~WAP~v~~~---~g~yylyys~~~~~~~~~~~~~~~~a~a~~p~G 111 (321)
T d1y7ba2 36 QIHHSKDLVNWHLVAHPLNRTSLLDMKG-NPNSGGIWAPDLSYH---DGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDG 111 (321)
T ss_dssp EEEEESSSSSCEEEECSBCSTTTCCCTT-CCTTCEECSCEEEEE---TTEEEEEEEEESCCSSSCCCEEEEEEEESSTTS
T ss_pred EEEECCCccCCEEccccccCCcccccCC-CcccCcccCceEEEE---CCEEEEEEEeeccCCCCccceeeEeeecCCCCC
Confidence 3457999999999998887651111111 122557999999887 667756666211110000111111111122555
Q ss_pred eeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEE-EEeCCCCCCEEeceeccCCCcccc
Q 012300 139 IWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGC-YSSKDMWTWKNEGIVLAAEETNET 217 (466)
Q Consensus 139 ~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v-~sS~DLv~W~~~g~vL~~~~~~~~ 217 (466)
.|.+.......+.|++++.++++..|++++....+... .....+.+ -.+.|+.........+-..
T Consensus 112 p~~~~~~~~~~~~D~~~~~d~dg~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 177 (321)
T d1y7ba2 112 VWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYN---------HNFYGIVLQEYSDKEKKLIGKAKIIYKG----- 177 (321)
T ss_dssp CCCCCEECCCSCSCCEEEECTTSCEEEEEEEECCCTTS---------CSEEEEEEEEEETTTTEEEEEEEEEECC-----
T ss_pred CcccceeecccccCCcEEEEcCCCEEEEEeccCCCccc---------cCccceeeEeeCCCcceEcCCceEEeec-----
Confidence 66543323334578888887655555555544332111 01112333 3355665555444332211
Q ss_pred cccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCC--CCccCceEEE
Q 012300 218 HDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHG--FDSRDMTIFK 288 (466)
Q Consensus 218 ~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g--~~~iDp~vF~ 288 (466)
......++|.|++ ++|.|||+++..... ...++++|+|++|.|||+...... +.+ ...-..+||+
T Consensus 178 ---~~~~~~Egp~v~k--~~g~yyl~~s~~~~~-~~y~~~~~rs~~~~Gp~~~~~~~p~~~~~~~~~~~~~g~GH~~~v~ 251 (321)
T d1y7ba2 178 ---TDIKYTEGPHIYH--IGDYYYLFTAEGGTT-YEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVH 251 (321)
T ss_dssp ---CTTCCCEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEESSTTCCCEECTTCCSEECTTCTTCSSEEEEEEEEEE
T ss_pred ---cCCCccccceEEE--ECCEEEEEEcCCCCC-CCcceEEEEEcccCCccccCCCCceeeeecCCCCCcccCCEEEEEE
Confidence 1234579999996 899999999875432 357899999999999998753211 111 1234677899
Q ss_pred cCCCcEEEEEEe
Q 012300 289 DDDGVAYLVYSS 300 (466)
Q Consensus 289 DdDG~~YL~~g~ 300 (466)
++||+.|++|..
T Consensus 252 ~~~g~~~~~~h~ 263 (321)
T d1y7ba2 252 THTDEWYLAHLV 263 (321)
T ss_dssp CTTSCEEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 989999999975
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=99.41 E-value=2.3e-12 Score=126.49 Aligned_cols=207 Identities=12% Similarity=0.081 Sum_probs=118.2
Q ss_pred ccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc-CCCceeee----
Q 012300 61 PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN-GNDSFYYY---- 135 (466)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~-~~~~~~i~---- 135 (466)
..|+||++||.++.+++.+. ..........+..|||+|... +..+.+.|+.. ...... .....++.
T Consensus 39 ~~S~DLv~W~~~g~~~~~~~-~~~~~~~~~~~~~WAPev~~~---~G~yylyys~~-----~~~~~~~~~~~~~~~~sd~ 109 (322)
T d2exha2 39 YHSKDLKNWRLVARPLNRLS-QLNMIGNPDSGGVWAPHLSYS---DGKFWLIYTDV-----KVVEGQWKDGHNYLVTCDT 109 (322)
T ss_dssp EEESSSSSCEEEECCBCSTT-TCCCTTCCTTCBBCSCEEEEE---TTEEEEEEEEE-----CCCSSSCCCEEEEEEEESS
T ss_pred EECCCcCCcEEccccccccc-ccccCCCcccCCcccceEEEE---CCEEEEEEEee-----cccCCCccccceEEEecCC
Confidence 56999999999998886652 111112223557999999876 77775666521 111111 11111222
Q ss_pred cCceeeCCCCCeEE----eeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceecc
Q 012300 136 PGRIWLDTEGAPIQ----AHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLA 210 (466)
Q Consensus 136 pg~~w~dt~GnpI~----ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~ 210 (466)
|...|.+ |+. ..|++++.++ +|+.|++ +........ ....++.+.+ .+...++..+....
T Consensus 110 ~~gp~~~----~~~~~~~~~dp~~f~d~-dG~~Yl~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~ 174 (322)
T d2exha2 110 IDGAWSD----PIYLNSSGFDPSLFHDE-DGRKYLVNMYWDHRVDH---------HPFYGIVLQE-YSVEQKKLVGEPKI 174 (322)
T ss_dssp TTSCCCC----CEECCCSCSCCEEEECT-TSCEEEEEEEECCCTTS---------CSEEEEEEEE-EETTTTEEEEEEEE
T ss_pred CCCCccc----ceEecCCCCCCCeEEEc-CCCEEEEecccCCccCc---------CCccceEEee-ecCcCCeECCCcEE
Confidence 3334432 222 3578888775 4565554 444322110 0111233222 22334555443211
Q ss_pred CCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCC--CCc
Q 012300 211 AEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHG--FDS 281 (466)
Q Consensus 211 ~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g--~~~ 281 (466)
. +. ......+++|.|++ ++|+|||+|+....+ ...+++||+|++|.|||+...... +.+ ...
T Consensus 175 ~----~~--~~~~~~~Egp~i~k--~~g~YYl~~s~~~~~-~~y~v~~~rS~~~~GP~~~~~~~pi~~~~~~~~~~~~g~ 245 (322)
T d2exha2 175 I----FK--GTDLRITEGPHLYK--INGYYYLLTAEGGTR-YNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKA 245 (322)
T ss_dssp E----EC--CCTTCCCEEEEEEE--ETTEEEEEEEESCSS-TTCEEEEEEESSTTCCCEECTTCCSEESTTCTTCSSEEE
T ss_pred E----EE--ecCCCcccCcEEEE--ECCEEEEEEeCCCCC-CCceEEEEEeCCCCcccccCCCceEeccCCCCCCCccCC
Confidence 1 00 01245689999997 899999999875443 247899999999999998643211 111 123
Q ss_pred cCceEEEcCCCcEEEEEEe
Q 012300 282 RDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~ 300 (466)
-..+||+++||+.|++|..
T Consensus 246 GH~~~v~~~dg~w~~~yh~ 264 (322)
T d2exha2 246 GHASIVHTHTDEWFLVHLT 264 (322)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEEE
Confidence 4667999889999999975
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=99.39 E-value=2.4e-12 Score=125.78 Aligned_cols=215 Identities=13% Similarity=0.072 Sum_probs=117.6
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc-CCCceeeecCc
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN-GNDSFYYYPGR 138 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~-~~~~~~i~pg~ 138 (466)
...|+||++||.++.+++.+. ..........+..|||+|.+. +-.+.+.|+.... ........ ..-...-.|..
T Consensus 38 i~~S~DLv~W~~~g~~~~~~~-~~~~~~~~~~~~~WAP~v~~~---~G~~ylyy~~~~~-~~~~~~~~~~~~~~a~~p~g 112 (317)
T d1yrza2 38 IHHSRDLKHWRFVSSPLTRTS-QLDMKGNMNSGGIWAPCLSYH---DGTFYLIYTDVKQ-WHGAFKDAHNYLVTAQNIEG 112 (317)
T ss_dssp EEEESSSSSCEEEECSBCSTT-TCCCTTCCTTCEECSCEEEEE---TTEEEEEEEEEEE-CSSSCCEEEEEEEEESSSSS
T ss_pred EEECCCCCCCeECCccccCcc-ccccCCCcccceeecceEEEE---CCEEEEEEEEecc-CCCCcccceEEEEecCCCCC
Confidence 457999999999998887651 111111112557999998877 6666555551100 00111100 00000112334
Q ss_pred eeeCCCCCeEEeeCCceEEECCCCEEEE-EEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEeceeccCCCccc
Q 012300 139 IWLDTEGAPIQAHGGGILYDERSRTYFW-YGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIVLAAEETNE 216 (466)
Q Consensus 139 ~w~dt~GnpI~ahd~~Ii~~~~~g~YYl-ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~vL~~~~~~~ 216 (466)
.|.+.--....+.|++++++++ |+.|+ ++........ ....++.+.. +.| .++..+.......
T Consensus 113 p~~~~~~~~~~~iDp~~f~D~d-G~~Yl~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~--- 177 (317)
T d1yrza2 113 PWSDPIYLNSSGFDPSLFHDDD-GRKWLVNMIWDYRKGN---------HPFAGIILQEYSEA--EQKLVGPVKNIYK--- 177 (317)
T ss_dssp CCCCCEECCCSCSCCEEEECTT-SCEEEEEEEECCCTTS---------CSEEEEEEEEEETT--TTEEEEEEEEEEC---
T ss_pred CccceeeecCCccCCcEEEecC-CCEEEEEeccCcCCCC---------ccccceeeeecCcc--cCeEcCCceEEEe---
Confidence 4432110001135888888764 55555 4444321110 0112333333 333 3443332211111
Q ss_pred ccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CC-C-CCccCceEE
Q 012300 217 THDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PH-G-FDSRDMTIF 287 (466)
Q Consensus 217 ~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~-g-~~~iDp~vF 287 (466)
......+++|.|++ ++|+|||+|+....+. ..+++||+|++|.|||+...... +. + ...-..++|
T Consensus 178 ---~~~~~~~Egp~i~k--~~g~yyl~~s~~~~~~-~y~v~~~~s~~~~Gp~~~~~~~p~~~~~~~~~~~~~g~GH~s~~ 251 (317)
T d1yrza2 178 ---GTDIQLTEGPHLYK--KDGYYYLLVAEGGTEY-EHAATLARSQSIDGPYETDPSYPLVTSTGQPELALQKAGHGSLV 251 (317)
T ss_dssp ---CCTTCCCEEEEEEE--ETTEEEEEEEESCSST-TCEEEEEEESSTTCCCEECTTCCSEECTTCTTCSSEEEEEEEEE
T ss_pred ---ccCCCcccCceEEE--ECCEEEEEEccCCCCC-cceEEEEEECCCCCccccCCCcceeccCCCCcCCcccCCccEEE
Confidence 11245689999996 8999999999865432 46899999999999999753211 11 1 133567889
Q ss_pred EcCCCcEEEEEEe
Q 012300 288 KDDDGVAYLVYSS 300 (466)
Q Consensus 288 ~DdDG~~YL~~g~ 300 (466)
+++||+.|++|..
T Consensus 252 ~~~dG~~~~~~h~ 264 (317)
T d1yrza2 252 ETQNGEWYLAHLC 264 (317)
T ss_dssp ECTTSCEEEEEEE
T ss_pred ECCCCeEEEEEEE
Confidence 8889999999865
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=99.23 E-value=1.4e-10 Score=112.03 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=100.9
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccc----cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAK----RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
+..|+||++||..+.+++.+. ..+.. ..+..|||+|... +..+.+.|+. .+.........+...
T Consensus 37 i~~S~DL~~W~~~g~~~~~~~----~~~~~~~~~~~~~~WAP~v~~~---~g~yylyy~~-----~~~~~~~~~i~~a~s 104 (291)
T d1uv4a1 37 VLKSSDAKNWTVQKSIFTTPL----SWWSNYVPNYGQNQWAPDIQYY---NGKYWLYYSV-----SSFGSNTSAIGLASS 104 (291)
T ss_dssp EEEESSSSSCEEEEEETSSCC----GGGGGTSTTCCSBCEEEEEEEE---TTEEEEEEEE-----CCTTCSCEEEEEEEE
T ss_pred EEECCCCCCCEECcccccCCc----ccccccCCccCCcccceEEEEE---CCEEEEEEEe-----cCCCCCcceEEEEEe
Confidence 456899999999999888762 12221 1456999998887 6677555552 111110000000111
Q ss_pred ---cCceeeCC-------CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEe-CCCCCCEE
Q 012300 136 ---PGRIWLDT-------EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS-KDMWTWKN 204 (466)
Q Consensus 136 ---pg~~w~dt-------~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS-~DLv~W~~ 204 (466)
|...|.+. ......+.|+.++.++ +|+.|++-... ..++.+.+. .|......
T Consensus 105 ~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~-dG~~Y~~~~~~----------------~~~i~i~~l~~~~~~~~g 167 (291)
T d1uv4a1 105 TSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDK-DGNPWLAFGSF----------------WSGIKLTKLDKSTMKPTG 167 (291)
T ss_dssp SCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECT-TSCEEEEECBS----------------TTCEEEEEECTTTCSEEE
T ss_pred CCCCCCCCCcCccccccccCCCCCccCceEEEec-CCcEEEEeccc----------------CCceEEEeeccccccCcC
Confidence 23345421 1111124588988875 67777764321 123555553 34333332
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceec
Q 012300 205 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 205 ~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~ 271 (466)
....+.... .....+++|.|++ ++|+|||+|+.... .....++++|+|++|.|||++.
T Consensus 168 ~~~~i~~~~-------~~~~~~EgP~i~k--~~g~Yyl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~ 228 (291)
T d1uv4a1 168 SLYSIAARP-------NNGGALEAPTLTY--QNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDK 228 (291)
T ss_dssp EEEEEECCT-------TTTTCEEEEEEEE--ETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBCT
T ss_pred ceeEEEecC-------CCCccccccEEEE--ECCEEEEEEecCcccCCCCCCceeEEEEcCCCCCCCccC
Confidence 222221111 1345789999997 89999999997643 1235689999999999999865
|
| >d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: alpha-L-arabinanase species: Cellvibrio cellulosa [TaxId: 155077]
Probab=99.16 E-value=1.6e-10 Score=111.62 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=117.3
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccc-----cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCcee-
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAK-----RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFY- 133 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~- 133 (466)
+..|+||++||.++.+++.+ |.|.+ ..+..|||+|... +....+.|+-.... -........+.
T Consensus 30 ~~~S~DLvnW~~~g~~~~~~-----~~~~~~~~~~~~~~~WAP~v~~~---~g~~~~~y~~~~~~---~~~~~~~~~~~~ 98 (318)
T d1gyha_ 30 IYSSKDRVNWRYSDRAFATE-----PTWAKRVSPSFDGHLWAPDIYQH---KGLFYLYYSVSAFG---KNTSAIGVTVNK 98 (318)
T ss_dssp EEEESSSSEEEEEEESSSSC-----CTTHHHHCTTCCSEEEEEEEEEE---TTEEEEEEEECCTT---SCCEEEEEEEES
T ss_pred EEECCCCCCCeECCccccCC-----ccccccCCCcCCCceECCEEEEE---cCceEEEEEEecCC---CcccceeEEEEe
Confidence 45689999999999998765 44432 2457899999887 66664555511100 00000000000
Q ss_pred -ee---cCceeeC--------CCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCC
Q 012300 134 -YY---PGRIWLD--------TEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMW 200 (466)
Q Consensus 134 -i~---pg~~w~d--------t~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv 200 (466)
.. |...|.+ .......+.|+.++.++ +|++|++-.... .++.+.. +.|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~v~~d~-dG~~Yl~~~~~~----------------~~~~~~~~~~~~~ 161 (318)
T d1gyha_ 99 TLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADD-HGQVWMSFGSFW----------------GGLKLFKLNDDLT 161 (318)
T ss_dssp CSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECT-TSCEEEEECBST----------------TCEEEEEBCTTSS
T ss_pred ccCCCccccccccCceecccCCCCCCCceEccceEeec-CCcEEEeccCCC----------------CCeeeEecCccce
Confidence 00 1112221 01112224578887764 677777754321 1222322 23332
Q ss_pred ------CCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceec
Q 012300 201 ------TWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 201 ------~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~ 271 (466)
.+.............. .......+++|.|++ ++|+|||+|+..... .....+++++|++|.|||+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~EgP~i~k--~~g~yyl~yS~~~~~~~~~~~y~~~~~~s~~~~Gp~~~~ 237 (318)
T d1gyha_ 162 RPAEPQEWHSIAKLERSVLMDD--SQAGSAQIEAPFILR--KGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGPYLDK 237 (318)
T ss_dssp SBCSSCCEEEEECCCCCTTSCT--TSCCSCCEEEEEEEE--ETTEEEEEEEESCCSCGGGCCCEEEEEEESSTTSCCBCT
T ss_pred eeccccccccccccccceeecc--CCCCCceeecCEEEE--ECCEEEEEEecCCCCCCCcccceeeeecccCCCCCcccC
Confidence 2222221111000000 012346789999996 899999999975321 234689999999999999865
Q ss_pred cccCC--CC-----------CCccCceEEEcCCCcEEEEEEecCC-----CcEEEEEc
Q 012300 272 YSKRP--HG-----------FDSRDMTIFKDDDGVAYLVYSSEDN-----SELHIGPL 311 (466)
Q Consensus 272 ~~~~p--~g-----------~~~iDp~vF~DdDG~~YL~~g~~~n-----~~i~i~~L 311 (466)
..... .+ ...-..++|.+ +|+.|++|.+..+ ..+.+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~GH~s~~~~-~g~~~~~yH~~~~~~~~~R~~~i~~v 294 (318)
T d1gyha_ 238 TGRDMNQGGGSLLIKGNKRWVGLGHNSAYTW-DGKDYLVLHAYEAADNYLQKLKILNL 294 (318)
T ss_dssp TSBBGGGTCCEEEECCCSSEEEEEEEEEEEE-TTEEEEEEEEEEGGGTTEEEEEEEEC
T ss_pred CCCccccCCCceeecCCCceEeCCccEEEEe-CCCEEEEEEeEcCCCCCCcEEEEEEE
Confidence 32111 00 01224567765 6899999986421 24566665
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=99.15 E-value=2.2e-10 Score=111.08 Aligned_cols=204 Identities=16% Similarity=0.123 Sum_probs=111.8
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccc------cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc--CCCc
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAK------RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN--GNDS 131 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~--~~~~ 131 (466)
+..|+||++||.++.+||.+ +.+.. ..+..|||+|-.. +-.+.+.|+ +.+..... ...+
T Consensus 47 i~~S~DL~nW~~~g~~l~~~-----~~~~~~~~~~~~~~~~WAP~v~~~---~g~yyl~~t-----~~~~~~~~~~~~~~ 113 (312)
T d1wl7a1 47 IKTSEDGVHWENMGRVFPSL-----PDWCKQYVPEKDEDHLWAPDICFY---NGIYYLYYS-----VSTFGKNTSVIGLA 113 (312)
T ss_dssp EEEESSSSEEEEEEESCSSC-----CTTHHHHCTTCCSCEEEEEEEEEE---TTEEEEEEE-----ECCTTCCCEEEEEE
T ss_pred EEEcCCCCCceECcccccCC-----cccccccCCcccCCceEcceEEEe---CCEEEEEEE-----eecCCcccceeeEE
Confidence 46789999999999999876 22211 1457899999887 666644444 11111100 0000
Q ss_pred e-----eeecCceeeC-------CCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCC
Q 012300 132 F-----YYYPGRIWLD-------TEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKD 198 (466)
Q Consensus 132 ~-----~i~pg~~w~d-------t~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~D 198 (466)
. .-.|-..|.+ .......+.|++++.++ +|+.|++..... .++.+.+ +.|
T Consensus 114 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iD~~~f~d~-dG~~y~~~~~~~----------------~~i~~~~l~~d 176 (312)
T d1wl7a1 114 TNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQ-EGQPWLSFGSFW----------------SGIQLIQLDTE 176 (312)
T ss_dssp EESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECT-TSCEEEEECBST----------------TCEEEEEBCTT
T ss_pred EEecccCCCCccccccccceecCCCCCCCCcCCCceeEcc-CCcEEEeecCCC----------------CceeEEEEcCc
Confidence 0 0011122221 11111234588887764 677777653221 1233333 334
Q ss_pred CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccC
Q 012300 199 MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKR 275 (466)
Q Consensus 199 Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~ 275 (466)
+......+..+...... .....+++|.|++ ++|+|||+|+..... ....++++|+|++|.|||+......
T Consensus 177 ~~~~~~~~~~i~~~~~~-----~~~~~~EgP~v~k--~~g~yYl~ys~~~~~~~~~~~~~~~~a~s~~~~GP~~~~~~~~ 249 (312)
T d1wl7a1 177 TMKPAAQAELLTIASRG-----EEPNAIEAPFIVC--RNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDKNGVS 249 (312)
T ss_dssp TCSBCTTCCCEEEECCS-----SSSCCEEEEEEEE--ETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTCCCBCTTCCB
T ss_pred CCcCcCCceEEEecccC-----CCCCcccccEEEE--ECCcEEEEEecCCCcCCCCCCceEEEEecCCCCcccccCCCCc
Confidence 43322222222111111 1346689999996 899999999975321 2346899999999999998653211
Q ss_pred -----------CCC--CCccCceEEEcCCCcEEEEEEec
Q 012300 276 -----------PHG--FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 276 -----------p~g--~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
..+ ...-..++|.|++ +.|++|...
T Consensus 250 ~~~~~~~~~~~~~~~~~gpGH~s~~~~~~-~~~~~yH~~ 287 (312)
T d1wl7a1 250 MMQGGGTILDAGNDRWIGPGHCAVYFSGV-SAILVNHAY 287 (312)
T ss_dssp GGGTCCEEEECCCSSEEEEEEEEEEEETT-EEEEEEEEE
T ss_pred cCcCCCceeecCCCCEEeCCCcEEEEeCC-cEEEEEEee
Confidence 011 0123567887655 557777653
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=98.95 E-value=3.6e-08 Score=97.88 Aligned_cols=182 Identities=18% Similarity=0.170 Sum_probs=114.5
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
++.++++. +|+|+||-.+..... .| +...+..++|+||+||+.++++|.+.... ......++..+
T Consensus 22 DPnGl~y~--~G~yHlFyQ~nP~~~---~~------g~~~WgHa~S~DLv~W~~~p~al~p~~~~----~d~~~~~~SGs 86 (353)
T d1y4wa2 22 DPNGLLYH--NGTYHLFFQYNPGGI---EW------GNISWGHAISEDLTHWEEKPVALLARGFG----SDVTEMYFSGS 86 (353)
T ss_dssp EEEEEEEE--TTEEEEEEEECTTCS---SS------CSCEEEEEEESSSSSCEEEEEEECCBTTT----SCCCBEEEEEE
T ss_pred CCccceEE--CCEEEEEEecCCCCC---CC------CCeEEEEEEeccccceeECCccccCCccC----cCCCCccccCc
Confidence 34457776 599999988754211 11 23457899999999999999998764321 11245688999
Q ss_pred EEEEcc---------CCEEEEEEEEeCC-----------CCCcceEEEEEeCCCCCCceeccc---c---CCCC-----C
Q 012300 231 VIYNDR---------TGKYVMWMHIDDC-----------NYTKAAVGVAISDYPTGPFDYLYS---K---RPHG-----F 279 (466)
Q Consensus 231 viyn~~---------~GkYyly~s~~~~-----------~~~~~~IGVA~SdsP~GPf~~~~~---~---~p~g-----~ 279 (466)
++.+.. +.+.+++|++... ..+.+.+.+|+|.+..-.|+.... . .+.+ .
T Consensus 87 av~~~~~~~~~~~~g~~~l~~~YT~~~~~~~~~~~~~~~~~~~~~q~~A~s~d~g~~~~~~~~~npvi~~~~~~~~~~~~ 166 (353)
T d1y4wa2 87 AVADVNNTSGFGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQ 166 (353)
T ss_dssp EEECTTCTTSCCCSSSCCEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTT
T ss_pred eEecCCCccccccCCCceEEEEEeeeecccccccCcccccCCcEEEEEEEECCCCcceEEecCCCeEecCCCCCCccccc
Confidence 987422 1246666665421 123456788998886555654321 1 1222 2
Q ss_pred CccCceEEEcCCCcEEEEEEec-CCCcEEEEEcCCCCCCccc--cEEEe-ecCceeeeeEEEEE------CCEEEEEEe
Q 012300 280 DSRDMTIFKDDDGVAYLVYSSE-DNSELHIGPLTSDYLDVSN--VVRRI-LVGQHREAPALFKH------LGTYYMVTS 348 (466)
Q Consensus 280 ~~iDp~vF~DdDG~~YL~~g~~-~n~~i~i~~Ls~D~~~~~g--~~~~i-~~g~~~EgP~ifK~------~G~YYL~yS 348 (466)
..+||.||.++++.+||+-++. ..+.+.+.+ |+|+.+++- +.... ..+...|+|-+|+. +.+++|+.+
T Consensus 167 ~fRDP~V~~~~~~~~~~~~~~~~~~g~v~ly~-S~Dl~~W~~~g~l~~~~~~g~~wECPdlf~l~~~~~~~~~~vl~~g 244 (353)
T d1y4wa2 167 NFRDPFVFWHDESQKWVVVTSIAELHKLAIYT-SDNLKDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSG 244 (353)
T ss_dssp SEEEEEEEEETTTTEEEEEEEEGGGTEEEEEE-ESSSSSCEEEEEECCCSCCSSEEEEEEEEEEEBTTSSCEEEEEEEE
T ss_pred ccCCCceEEECCCCEEEEEEeecCCCeEEEEe-cCCCCceEEeccccccCCCCcceeeeEEEEeecCCCCceEEEEEec
Confidence 5699999998877777776553 234555555 788888752 22111 12468999999998 456777765
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=3e-08 Score=96.16 Aligned_cols=192 Identities=16% Similarity=0.209 Sum_probs=113.5
Q ss_pred cCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc---CCCceee-
Q 012300 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN---GNDSFYY- 134 (466)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~---~~~~~~i- 134 (466)
-|.+|+||+||++.+.||.|-. + ..-.++.-+-. .+..+..+|| ....++... ....+.+
T Consensus 47 gHa~S~Dlv~W~~~~~al~p~~--------d-~~g~~sGsav~---~~g~~~~~yT----~~~~~~~~~~~~~~~~~a~s 110 (294)
T d1uypa2 47 GHAVSDDLVHWRHLPVALYPDD--------E-THGVFSGSAVE---KDGKMFLVYT----YYRDPTHNKGEKETQCVVMS 110 (294)
T ss_dssp EEEEESSSSSCEEEEEEECCSS--------T-TEEEEEEEEEE---ETTEEEEEEE----EEECCCSSCCCEEEEEEEEE
T ss_pred EEEEeCCcCCeEECCccccccc--------C-CCCeEEEEEEe---cCCeEEEEEE----EeeCCCCCCcceeeeEEEEC
Confidence 4689999999999999996531 1 22344443221 2555555665 222222211 1111122
Q ss_pred ecCceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEE
Q 012300 135 YPGRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 204 (466)
Q Consensus 135 ~pg~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~ 204 (466)
..+..|....+|||+. +||.|.+. +|+|||+-...... ....+.+|+|+||++|+.
T Consensus 111 ~dg~~w~k~~~npvi~~~~~~~~~~fRDP~V~~~--~g~w~M~~g~~~~~------------~~G~i~ly~S~Dl~~W~~ 176 (294)
T d1uypa2 111 ENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRS--NGEWRMVLGSGKDE------------KIGRVLLYTSDDLFHWKY 176 (294)
T ss_dssp SSSSCCEECTTCCSBCSCSSTTEEEEEEEEEEEE--TTEEEEEEEEEETT------------TEEEEEEEEESSSSSEEE
T ss_pred CCCCceEeecCCceecCCCccCccccCCCccccc--CCEEEEEEEeeecC------------CccEEEEEEcCCccceeE
Confidence 2677787777788774 58887764 58899875432110 012478999999999999
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc-CCCCCCccC
Q 012300 205 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-RPHGFDSRD 283 (466)
Q Consensus 205 ~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-~p~g~~~iD 283 (466)
.+.+.... ....++.|+++. .++++||.++....+ ...+.+.+-..+.|+..... ...|....=
T Consensus 177 ~g~l~~~~---------~~~~~ECPdlf~--l~~~~vl~~s~~~~~----~~~y~~G~~~~~~f~~~~~~~lD~G~dfYA 241 (294)
T d1uypa2 177 EGAIFEDE---------TTKEIECPDLVR--IGEKDILIYSITSTN----SVLFSMGELKEGKLNVEKRGLLDHGTDFYA 241 (294)
T ss_dssp EEEEEEET---------TCSCEEEEEEEE--ETTEEEEEEEETTTT----EEEEEEEEEETTEEEEEEEEESCCSSSCEE
T ss_pred eccceeCC---------CCCceeeceEEE--eCCeeEEEEEecCCC----CeeeEeeeecCCeEEeecceEEccCCceee
Confidence 99775432 245689999995 899999999975432 33344444445677643211 122333333
Q ss_pred ceEEEcCCCcEEE
Q 012300 284 MTIFKDDDGVAYL 296 (466)
Q Consensus 284 p~vF~DdDG~~YL 296 (466)
|..|.|+ |+.+|
T Consensus 242 ~qtf~~~-~R~i~ 253 (294)
T d1uypa2 242 AQTFFGT-DRVVV 253 (294)
T ss_dssp EEECBSC-SSEEE
T ss_pred ccCccCC-CCEEE
Confidence 5566654 55443
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=3.3e-07 Score=93.45 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=55.7
Q ss_pred cEEEE-EeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-------CCCcceEEEEEe
Q 012300 190 GVGCY-SSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-------NYTKAAVGVAIS 261 (466)
Q Consensus 190 gi~v~-sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-------~~~~~~IGVA~S 261 (466)
+|.++ .|+||..|+..+.++..... ..++++|+|+. +||||||+++.... ......++.++|
T Consensus 279 ~I~l~~~s~D~~~We~~~pLl~a~~v--------~d~~ErP~I~~--~nGKYYLFtss~~~~~a~~~~~~~~~~~~g~Vs 348 (440)
T d1oyga_ 279 ALGMIELNDDYTLKKVMKPLIASNTV--------TDEIERANVFK--MNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVS 348 (440)
T ss_dssp EEEEEEECTTSSEEEEEEEEEECTTT--------CSCCEEEEEEE--ETTEEEEEEEEEGGGCCCTTCCTTCEEEEEEEE
T ss_pred eEEEEEeCCCcccceecCcceeccCC--------CCeEECCEEEE--ECCEEEEEEecccccccCCCcCCCCceEEEEEC
Confidence 45554 48999999999887765442 45689999996 99999999886521 122356788999
Q ss_pred CCCCCCceecc
Q 012300 262 DYPTGPFDYLY 272 (466)
Q Consensus 262 dsP~GPf~~~~ 272 (466)
|++.|||++..
T Consensus 349 dsl~Gpy~PlN 359 (440)
T d1oyga_ 349 NSLTGPYKPLN 359 (440)
T ss_dssp SSTTCCCEEGG
T ss_pred CCCCCCCeecC
Confidence 99999999764
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=7.3e-07 Score=87.42 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=89.6
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc--CC-------CCCCccCceEEEcCCCc
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--RP-------HGFDSRDMTIFKDDDGV 293 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--~p-------~g~~~iDp~vF~DdDG~ 293 (466)
...+..|.|++ .+|+|||+|.+.+.+ ...+||+|+|++-. -|+..... .| ......||.|++. +|+
T Consensus 42 ~~~vfNp~~i~--~~g~~~ll~r~~~~~-~~~~ig~A~S~DGi-~w~~~~~pv~~p~~~~~~~~~~gv~DPrv~~~-~d~ 116 (327)
T d1vkda_ 42 GARVFNSAVVP--YNGEFVGVFRIDHKN-TRPFLHFGRSKDGI-NWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKI-EDT 116 (327)
T ss_dssp EEEEEEEEEEE--ETTEEEEEEEEEETT-SCEEEEEEEESSSS-SCEECSSCCCEECTTSCBCCCSSEEEEEEEEE-TTE
T ss_pred hhceeccEEEE--ECCEEEEEEEecCCC-CceEEEEEEcCCcc-CCEeCCCCeecCCCCCcccccCcEEcceEEEE-CCE
Confidence 45688999997 899999999887654 46789999999854 47643210 01 1134679999986 568
Q ss_pred EEEEEEecCCC-cEEEEEcCCCCCCccccEEEeecCceeeeeEEE--EECCEEEEEEeCCC-CCCCC-cEEEEEeCCCCC
Q 012300 294 AYLVYSSEDNS-ELHIGPLTSDYLDVSNVVRRILVGQHREAPALF--KHLGTYYMVTSGCT-GWAPN-EALVHAAESIMG 368 (466)
Q Consensus 294 ~YL~~g~~~n~-~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~if--K~~G~YYL~yS~~t-g~~~n-~~v~~~Sds~~G 368 (466)
+||+|.+..++ .+.++ .+.|+..+.... .+.. ...-.+.+| |.+|+|+|++.... ..... ....+.|+++.
T Consensus 117 yym~yt~~~~~~~i~lA-~S~D~~~w~k~g-~~~~-~~~kd~~lfpeki~Gky~ml~Rp~~~~~~~~~~I~la~S~Dl~- 192 (327)
T d1vkda_ 117 YYITFCTDDHGPTIGVG-MTKDFKTFVRLP-NAYV-PFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPDMI- 192 (327)
T ss_dssp EEEEEEEESSSEEEEEE-EESSSSSEEEEC-CSSS-SSEEEEEECSSCBTTBEEEEEEECCSSSCSCCCEEEEEESSSS-
T ss_pred EEEEEEecCCCcEEEEE-EecCcchheecC-CccC-ccccCceEeeeeccCeEEEEEeeccCCCcccceEEEEcCCCcc-
Confidence 99999876443 34444 478887764211 1111 223344566 56999999985321 11111 22334677765
Q ss_pred CceeCCCc
Q 012300 369 PWEDMGNP 376 (466)
Q Consensus 369 Pw~~~gnP 376 (466)
-|+....+
T Consensus 193 ~W~~~~~v 200 (327)
T d1vkda_ 193 HWGNHRFV 200 (327)
T ss_dssp CBEEEEEE
T ss_pred ccccccee
Confidence 47765433
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=98.25 E-value=5.3e-06 Score=81.78 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=50.2
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
+||.|.+.+ ++.||+++..... -..+.+|+|+||.+|+..+....... .+.+.+.|+
T Consensus 169 RDP~V~~~~-~~~~~~~~~~~~~--------------~g~v~ly~S~Dl~~W~~~g~l~~~~~--------~g~~wECPd 225 (353)
T d1y4wa2 169 RDPFVFWHD-ESQKWVVVTSIAE--------------LHKLAIYTSDNLKDWKLVSEFGPYNA--------QGGVWECPG 225 (353)
T ss_dssp EEEEEEEET-TTTEEEEEEEEGG--------------GTEEEEEEESSSSSCEEEEEECCCSC--------CSSEEEEEE
T ss_pred CCCceEEEC-CCCEEEEEEeecC--------------CCeEEEEecCCCCceEEeccccccCC--------CCcceeeeE
Confidence 588888775 4566666653211 12488999999999999997644321 246789999
Q ss_pred EEEEc----cCCEEEEEEEEeC
Q 012300 231 VIYND----RTGKYVMWMHIDD 248 (466)
Q Consensus 231 viyn~----~~GkYyly~s~~~ 248 (466)
++.=+ .+.+++|.++...
T Consensus 226 lf~l~~~~~~~~~~vl~~g~~~ 247 (353)
T d1y4wa2 226 LVKLPLDSGNSTKWVITSGLNP 247 (353)
T ss_dssp EEEEEBTTSSCEEEEEEEEEES
T ss_pred EEEeecCCCCceEEEEEecccC
Confidence 98610 1446788777653
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=82.27 E-value=5 Score=36.25 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=69.0
Q ss_pred EEEEEeCCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCC
Q 012300 191 VGCYSSKDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPT 265 (466)
Q Consensus 191 i~v~sS~DL-v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~----~~~~~IGVA~SdsP~ 265 (466)
..++.|+|. .+|+.....+...... . ......+.-......+|+.+++|+..... .+...+.+.+|.+=-
T Consensus 237 ~~~~~S~D~G~tW~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G 311 (364)
T d1w0pa3 237 RQQFLSKDGGITWSLLEANNANVFSN----I-STGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEG 311 (364)
T ss_dssp EEEEEESSSSSSCEEEEEEEGGGSTT----C-CSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTT
T ss_pred eEEEEEcCCCccccccccCcccccCC----c-CCCcccceeEEeecCCCceEEEEeCCCCCccCCCceeeeEEEEEcCCC
Confidence 456777775 6899876543322111 0 11122222222324678888888754321 134568888888743
Q ss_pred CCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCC
Q 012300 266 GPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYL 316 (466)
Q Consensus 266 GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~ 316 (466)
-.|+......+ + .+--|++.+-+||+.|++|... +.+|++.+|..+.+
T Consensus 312 ~TW~~~~~l~~-g-~~~Ys~~~~~~~g~~~~~ye~~-~~~i~~~~~~~~~l 359 (364)
T d1w0pa3 312 VTWKGPIQLVN-G-ASAYSDIYQLDSENAIVIVETD-NSNMRILRMPITLL 359 (364)
T ss_dssp SCCEEEEECCS-S-BCCSEEEEECSSSEEEEEEECG-GGCEEEEEEEHHHH
T ss_pred cCCCCCeEEcC-C-CCCCCceEEcCCCEEEEEEEcC-CCcEEEEEEEHHHh
Confidence 46876433222 2 2346778877899999999754 34688988865543
|