Citrus Sinensis ID: 012346

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPPERQEQTPNTQVTANLLSRDGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLNSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAALAKMRQEKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
cccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHcccccccccccHHHHccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHccccHHHHHHHHccEEEEcccccccHHHHHHHHcccccccEEEEEEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccEEEEEEcccccHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccEEEEEEc
cccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccccccccHHHccccccccccccHHccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccHccccHHHHHHHHHHHHcEEEEEEccccccccHHHHHHHcccHHHHHHHHccEEEEEcccccHHHHHHHHHcccccccEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccEEEEEccccccHHHHHHHHHHcccccHccEEEEcccccEEcccccccccHHHcccccccEEEEEEc
MVDVADKLAYFQAitgledpdlCTEILQAHDWDLELAIssftssnppperqeqtpntqVTANLlsrdgqnrvdrsdslgnavagpglawrIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGmlglnsgrsgesstRLASVSAAALEAMEFVAVFERdygnvkpnfvseGFMDALQRSRSVFKLLFVYLhspdhpdtpafcegtLCNEVLAAFVNENFVSwggsirasegfkmsnslkasrypfcavvMPAANQRIALLQqvegpkspEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAALAKMRQEKAlslgaepekgpnvtqvlvrfpngerkerrfhSTAVVQLLYDYVDSlgclevqnyslvsnfprvvystdkfslslkeaglhpqasLFVELN
MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSsnppperqeqtpnTQVTANLLSRDGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLNSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREaaeaerkhkeevearEREAREAAEREAALAKMRQEKAlslgaepekgpnvtQVLVrfpngerkerrfHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSlkeaglhpqaslfveln
MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPPERQEQTPNTQVTANLLSRDGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISAsiglvsgavglglwaaggvlsYSLGMLGLNSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAeerrnnmrlreeQDAAYraaleadqarerqrreeqerlereaaeaerkhkeevearereareaaereaalakMRQEKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
****ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS****************************************NAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLN*************VSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQ**********LMILQKV************************************************************************************************************VLVRF*******RRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEA*************
**DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS*************************************************WRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLG***************************AVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNP****************************************************************************************************TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT***************QVTANLLSRDGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLNS*************SAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALE************************************************AKMRQEKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
*VDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS**************************************AGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLNS**********ASVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQR************************************AALAKMRQEKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPPERQEQTPNTQVTANLLSRDGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLWAAGGVLSYSLGMLGLNSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
Q6GQ69445 FAS-associated factor 2-B N/A no 0.894 0.934 0.291 5e-48
Q28BP9445 FAS-associated factor 2 O yes no 0.890 0.930 0.296 9e-43
Q6AZH6445 FAS-associated factor 2-A N/A no 0.883 0.923 0.290 7e-40
Q2HJD0445 FAS-associated factor 2 O yes no 0.886 0.925 0.270 8e-37
Q96CS3445 FAS-associated factor 2 O yes no 0.886 0.925 0.267 8e-37
Q3TDN2445 FAS-associated factor 2 O yes no 0.886 0.925 0.263 6e-35
Q5BK32346 FAS-associated factor 2 O yes no 0.664 0.893 0.291 3e-29
Q9UNN5650 FAS-associated factor 1 O no no 0.630 0.450 0.283 3e-26
P54731649 FAS-associated factor 1 O no no 0.630 0.451 0.277 2e-25
Q924K2649 FAS-associated factor 1 O no no 0.627 0.449 0.281 6e-25
>sp|Q6GQ69|FAF2B_XENLA FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1 Back     alignment and function desciption
 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 231/474 (48%), Gaps = 58/474 (12%)

Query: 3   DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS-FTSSNPPPERQEQTPNTQVTA 61
           D  +KL  FQ +TG+E  D C + LQ H+W++E A+          P     TPN  +  
Sbjct: 12  DQTEKLLQFQDLTGIESIDQCRQTLQQHNWNIETAVQDRLNEQEGVPRVFNTTPNRPLQV 71

Query: 62  NLLSRDGQNRVDRSDSLGNAVAGP------GLAWRIITLPYSVISASIGLVSGAVGLGLW 115
           N       +RV         V+ P      G  + +I LP+ +                +
Sbjct: 72  N----TADHRV-----YSYVVSRPQPRGLLGWGYYLIMLPFRI--------------TYY 108

Query: 116 AAGGVLSYSLGMLGLNSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSEGF 175
               +  ++L  +  +           + V+    + + F+ +FE  YG+  P F    +
Sbjct: 109 TVLDIFRFALRFIRPDPR---------SRVTDPVGDVVSFIHLFEEKYGSTHPVFYQGTY 159

Query: 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235
             AL  ++   + L VYLH  DH D+  FC  TLC   +  F+N   + W  S    EGF
Sbjct: 160 SQALNDAKQELRFLLVYLHGEDHQDSDDFCRNTLCTSEVTHFINSRMLFWACSSNKPEGF 219

Query: 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARL 295
           ++S +L  S YPF A++M   ++R+ ++ ++EG   P++++  L  +IE +   L+  RL
Sbjct: 220 RVSQALHESTYPFLAMIM-LKDRRMTVVGRLEGLIQPQDLINQLTFIIEANQTYLVSERL 278

Query: 296 DAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEARER 355
           + EER     LR++QD AY  +L ADQ +ER+++E+Q++  RE  EA+RK   E E ++R
Sbjct: 279 EREERNQTQVLRQQQDEAYLVSLRADQEKERKKKEKQDQKRREEEEAQRKQMLE-ERKKR 337

Query: 356 EAREAAEREAALAKMRQEKALSLGAEP-EKGPNVTQVLVRFPNGERKERRFHSTAVVQLL 414
              E  ER          K+  L AEP    P+  +++ + PNG R ERRF  T  + ++
Sbjct: 338 NLEEEKER----------KSECLPAEPVPDHPDNVKIIFKMPNGTRVERRFLFTQSLSVI 387

Query: 415 YDYVDSLGCLEVQNYSLVSNFPRVV---YSTDKFSL--SLKEAGLHPQASLFVE 463
           +D++ SL     + + +V++FPR V     +++  +  +L+EAGL     LFV+
Sbjct: 388 HDFLFSLKETP-EKFQIVTSFPRQVLPCLPSEEIPVPPTLQEAGLSQSQLLFVQ 440

Xenopus laevis (taxid: 8355)
>sp|Q28BP9|FAF2_XENTR FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1 Back     alignment and function description
>sp|Q6AZH6|FAF2A_XENLA FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1 Back     alignment and function description
>sp|Q2HJD0|FAF2_BOVIN FAS-associated factor 2 OS=Bos taurus GN=FAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q96CS3|FAF2_HUMAN FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2 Back     alignment and function description
>sp|Q3TDN2|FAF2_MOUSE FAS-associated factor 2 OS=Mus musculus GN=Faf2 PE=2 SV=2 Back     alignment and function description
>sp|Q5BK32|FAF2_RAT FAS-associated factor 2 OS=Rattus norvegicus GN=Faf2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE=1 SV=2 Back     alignment and function description
>sp|P54731|FAF1_MOUSE FAS-associated factor 1 OS=Mus musculus GN=Faf1 PE=1 SV=2 Back     alignment and function description
>sp|Q924K2|FAF1_RAT FAS-associated factor 1 OS=Rattus norvegicus GN=Faf1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
225426641470 PREDICTED: FAS-associated factor 2-B-lik 0.995 0.985 0.764 0.0
15236931480 UBX domain-containing protein [Arabidops 0.995 0.964 0.724 0.0
224072270474 predicted protein [Populus trichocarpa] 1.0 0.981 0.757 0.0
255555707471 UBX domain-containing protein, putative 1.0 0.987 0.762 1e-180
224058028473 predicted protein [Populus trichocarpa] 1.0 0.983 0.761 1e-179
449452198467 PREDICTED: FAS-associated factor 2-B-lik 0.993 0.989 0.763 1e-178
3600032466 contains similarity to tropomyosin (Pfam 0.965 0.963 0.699 1e-177
356576614430 PREDICTED: FAS-associated factor 2-B-lik 0.922 0.997 0.733 1e-176
356535284465 PREDICTED: FAS-associated factor 2-B-lik 0.984 0.984 0.738 1e-169
297813531478 hypothetical protein ARALYDRAFT_489923 [ 0.980 0.953 0.681 1e-163
>gi|225426641|ref|XP_002281109.1| PREDICTED: FAS-associated factor 2-B-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/472 (76%), Positives = 403/472 (85%), Gaps = 9/472 (1%)

Query: 1   MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPPERQEQTPNTQVT 60
           MVDVADKLAYFQAITGLEDPDLC+EIL AH WDLELAISSFT +N   +R E +      
Sbjct: 1   MVDVADKLAYFQAITGLEDPDLCSEILAAHGWDLELAISSFTVTNS--DRPESSATVAAD 58

Query: 61  ANLLSRDGQNR-----VDRSDSLGNAVAGPGLAWRIITLPYSVISASIGLVSGAVGLGLW 115
              + R  Q+      +  S+++G  VA PGLAW++ITLP SVIS S+GL+SGA+GLG+W
Sbjct: 59  VAEVGRSEQSSEELRLLQISETMGGVVAPPGLAWKLITLPISVISGSLGLISGAIGLGMW 118

Query: 116 AAGGVLSYSLGMLGLNSG--RSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNFVSE 173
           AAGGVLSYSL M+GL SG  R+G+SS+ L SVSAA  EAM+FVA FE+DYG  +PNFV+E
Sbjct: 119 AAGGVLSYSLSMIGLGSGSGRNGDSSSPLVSVSAAGAEAMDFVASFEKDYGATRPNFVTE 178

Query: 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233
           GFMD LQ SR+ FKLLFVYLHSPDHPDTP FCE TLC+E LAAF+NENFVSWGG+IRASE
Sbjct: 179 GFMDGLQLSRNAFKLLFVYLHSPDHPDTPLFCERTLCSEPLAAFINENFVSWGGNIRASE 238

Query: 234 GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQA 293
           GFKMSNSLKASR+PFCAVVM A NQRIALLQQVEGPKSPEEML ILQKV+EES P L+ A
Sbjct: 239 GFKMSNSLKASRFPFCAVVMAATNQRIALLQQVEGPKSPEEMLTILQKVLEESAPVLVAA 298

Query: 294 RLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAR 353
           RLDAEERRN+ RLREEQDAAYR ALEADQARERQR+EEQERLEREAAEAERK KEE EAR
Sbjct: 299 RLDAEERRNSTRLREEQDAAYREALEADQARERQRKEEQERLEREAAEAERKRKEEEEAR 358

Query: 354 EREAREAAEREAALAKMRQEKALSLGAEPEKGPNVTQVLVRFPNGERKERRFHSTAVVQL 413
           ER AREAAE+EAALA+MRQEKALSLG+EPEKGPNVTQVLVRFP GERK+RRFHSTA +Q 
Sbjct: 359 ERAAREAAEKEAALARMRQEKALSLGSEPEKGPNVTQVLVRFPTGERKDRRFHSTATIQS 418

Query: 414 LYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN 465
           LYDYVDSLGCL+ ++YSLVSNFPRVVY  +K SLSLKEAGLHPQASLFVE N
Sbjct: 419 LYDYVDSLGCLDAESYSLVSNFPRVVYGPEKLSLSLKEAGLHPQASLFVEPN 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15236931|ref|NP_192817.1| UBX domain-containing protein [Arabidopsis thaliana] gi|7267777|emb|CAB81180.1| predicted protein of unknown function [Arabidopsis thaliana] gi|332657529|gb|AEE82929.1| UBX domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224072270|ref|XP_002303682.1| predicted protein [Populus trichocarpa] gi|222841114|gb|EEE78661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555707|ref|XP_002518889.1| UBX domain-containing protein, putative [Ricinus communis] gi|223541876|gb|EEF43422.1| UBX domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224058028|ref|XP_002299437.1| predicted protein [Populus trichocarpa] gi|222846695|gb|EEE84242.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452198|ref|XP_004143847.1| PREDICTED: FAS-associated factor 2-B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|3600032|gb|AAC35520.1| contains similarity to tropomyosin (Pfam: Tropomyosin.hmm, score: 14.57) and ATP synthase (Pfam: ATP-synt_B.hmm, score: 10.89) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356576614|ref|XP_003556425.1| PREDICTED: FAS-associated factor 2-B-like [Glycine max] Back     alignment and taxonomy information
>gi|356535284|ref|XP_003536178.1| PREDICTED: FAS-associated factor 2-B-like [Glycine max] Back     alignment and taxonomy information
>gi|297813531|ref|XP_002874649.1| hypothetical protein ARALYDRAFT_489923 [Arabidopsis lyrata subsp. lyrata] gi|297320486|gb|EFH50908.1| hypothetical protein ARALYDRAFT_489923 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2132751480 AT4G10790 [Arabidopsis thalian 0.670 0.65 0.628 3.2e-134
ZFIN|ZDB-GENE-050208-312445 faf2 "Fas associated factor fa 0.350 0.366 0.310 1.9e-33
UNIPROTKB|F1NUY5452 FAF2 "Uncharacterized protein" 0.350 0.360 0.292 2.1e-33
UNIPROTKB|E2R2I4445 FAF2 "Uncharacterized protein" 0.350 0.366 0.280 8.5e-31
UNIPROTKB|Q96CS3445 FAF2 "FAS-associated factor 2" 0.350 0.366 0.280 8.5e-31
UNIPROTKB|F1S399445 FAF2 "Uncharacterized protein" 0.350 0.366 0.280 1.4e-30
UNIPROTKB|Q2HJD0445 FAF2 "FAS-associated factor 2" 0.350 0.366 0.280 1.7e-30
MGI|MGI:1923827445 Faf2 "Fas associated factor fa 0.350 0.366 0.274 2.2e-29
RGD|1306577346 Faf2 "Fas associated factor fa 0.350 0.471 0.274 1.8e-24
UNIPROTKB|Q5BK32346 Faf2 "FAS-associated factor 2" 0.350 0.471 0.274 1.8e-24
TAIR|locus:2132751 AT4G10790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 966 (345.1 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
 Identities = 208/331 (62%), Positives = 229/331 (69%)

Query:     1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPPE----------R 50
             MVD  DKL YFQAITGLED DLCTEILQAH WDLELAISSFTSS+              R
Sbjct:     1 MVDTVDKLGYFQAITGLEDADLCTEILQAHGWDLELAISSFTSSDQDASSSAVDGGGNNR 60

Query:    51 QEQTPNTQVTANLLSR---DGQNRVDRSDSLGNAVAGPGLAWRIITLPYSVISAXXXXXX 107
                  N  VT +   R   D    V R D  GN   GPG+AWRIITLP S++S       
Sbjct:    61 DHDHNNATVTPDYPPRGIVDDTELVMRDDGGGNR--GPGVAWRIITLPISIVSGSLGLVS 118

Query:   108 XXXXXXXXXXXXXXXYSLGMLGLNSGRSGES-STRLASVSAAALEAMEFVAVFERDYGN- 165
                            YSLGMLG  SGR G S S RL SVS+A  EAMEFVA+F+RDYG+ 
Sbjct:   119 GAIGLGIWAAGGVLSYSLGMLGFRSGRGGGSESARLVSVSSAVGEAMEFVALFDRDYGSN 178

Query:   166 --VKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFV 223
                K +FV EGFMDALQRSRS FKLLFVYLHSPDHPDTP FC GTLCNE + AFVNENFV
Sbjct:   179 NAFKIDFVVEGFMDALQRSRSSFKLLFVYLHSPDHPDTPVFCGGTLCNEAVVAFVNENFV 238

Query:   224 SWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283
             SWGGSIR+SEGFKMSNSLKASR+PFCAVVMPAANQRIALLQQVEGPKSPEEML ILQ+++
Sbjct:   239 SWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAANQRIALLQQVEGPKSPEEMLAILQRIV 298

Query:   284 EESNPALLQARLDAXXXXXXXXXXXXQDAAY 314
             E+S+P L+ AR++A            QDAAY
Sbjct:   299 EDSSPTLVTARVEAEERRTNLRLREEQDAAY 329
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
ZFIN|ZDB-GENE-050208-312 faf2 "Fas associated factor family member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUY5 FAF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2I4 FAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CS3 FAF2 "FAS-associated factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S399 FAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJD0 FAF2 "FAS-associated factor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1923827 Faf2 "Fas associated factor family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306577 Faf2 "Fas associated factor family member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BK32 Faf2 "FAS-associated factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT4G10790
UBX domain-containing protein; UBX domain-containing protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- UAS (InterPro-IPR006577), UBX (InterPro-IPR001012); BEST Arabidopsis thaliana protein match is- SAY1 (TAIR-AT4G11740.1); Has 16384 Blast hits to 7928 proteins in 781 species- Archae - 7; Bacteria - 2234; Metazoa - 5947; Fungi - 1696; Plants - 733; Viruses - 184; Other Eukaryotes - 5583 (source- NCBI BLink). (480 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G04870
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (72 aa)
      • 0.966
AT1G26330
DNA binding; DNA binding; FUNCTIONS IN- DNA binding; INVOLVED IN- biological_process unknown; L [...] (1189 aa)
      • 0.966
AT1G25570
leucine-rich repeat protein-related; leucine-rich repeat protein-related; FUNCTIONS IN- protein [...] (628 aa)
      • 0.966
AtGRF6
AtGRF6 (GROWTH-REGULATING FACTOR 6); transcription activator; Growth regulating factor encoding [...] (244 aa)
      • 0.927
AT1G42980
formin homology 2 domain-containing protein / FH2 domain-containing protein; formin homology 2 [...] (299 aa)
      • 0.921
AT5G56000
heat shock protein 81-4 (HSP81-4); heat shock protein 81-4 (HSP81-4); FUNCTIONS IN- unfolded pr [...] (699 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
smart00594122 smart00594, UAS, UAS domain 7e-39
cd02958114 cd02958, UAS, UAS family; UAS is a domain of unkno 4e-36
cd02991116 cd02991, UAS_ETEA, UAS family, ETEA subfamily; com 2e-20
pfam0078978 pfam00789, UBX, UBX domain 2e-20
cd0176777 cd01767, UBX, UBX (ubiquitin regulatory X) domain 6e-14
smart0016677 smart00166, UBX, Domain present in ubiquitin-regul 1e-10
cd0177180 cd01771, Faf1_UBX, Faf1 UBX domain 7e-10
TIGR02794346 TIGR02794, tolA_full, TolA protein 4e-07
cd0177382 cd01773, Faf1_like1_UBX, Faf1 ike-1 UBX domain 9e-07
PLN03086 567 PLN03086, PLN03086, PRLI-interacting factor K; Pro 3e-06
cd0177485 cd01774, Faf1_like2_UBX, Faf1 ike-2 UBX domain 3e-06
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 6e-06
TIGR02794346 TIGR02794, tolA_full, TolA protein 1e-05
pfam00769244 pfam00769, ERM, Ezrin/radixin/moesin family 2e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 3e-05
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 4e-05
pfam05672171 pfam05672, MAP7, MAP7 (E-MAP-115) family 5e-05
PRK05035 695 PRK05035, PRK05035, electron transport complex pro 5e-05
PTZ00266 1021 PTZ00266, PTZ00266, NIMA-related protein kinase; P 9e-05
pfam09756189 pfam09756, DDRGK, DDRGK domain 9e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 1e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 4e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-04
cd0177279 cd01772, SAKS1_UBX, SAKS1-like UBX domain 7e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 8e-04
pfam09756189 pfam09756, DDRGK, DDRGK domain 8e-04
pfam07946322 pfam07946, DUF1682, Protein of unknown function (D 8e-04
cd0177079 cd01770, p47_UBX, p47-like ubiquitin domain 8e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.001
pfam05672171 pfam05672, MAP7, MAP7 (E-MAP-115) family 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
cd02990136 cd02990, UAS_FAF1, UAS family, FAS-associated fact 0.001
PRK05035695 PRK05035, PRK05035, electron transport complex pro 0.002
pfam12037276 pfam12037, DUF3523, Domain of unknown function (DU 0.002
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.002
TIGR02680 1353 TIGR02680, TIGR02680, TIGR02680 family protein 0.002
TIGR02794 346 TIGR02794, tolA_full, TolA protein 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
PRK06991270 PRK06991, PRK06991, ferredoxin; Provisional 0.003
pfam09660478 pfam09660, DUF2397, Protein of unknown function (D 0.003
pfam1284885 pfam12848, ABC_tran_2, ABC transporter 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
PRK14521186 PRK14521, rpsP, 30S ribosomal protein S16; Provisi 0.004
PRK11637428 PRK11637, PRK11637, AmiB activator; Provisional 0.004
>gnl|CDD|214737 smart00594, UAS, UAS domain Back     alignment and domain information 
 Score =  136 bits (345), Expect = 7e-39
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGG 227
           P F       A Q +    +LL++YLHS D PD+  F    LCNE + + + ENF+ W  
Sbjct: 9   PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQV 68

Query: 228 SIRASEGFKMSNSLKASRYPFCAVVMPAANQR-IALLQQVEGPKSPEEMLMILQ 280
            +  SEG ++S   K   +P+ A+V P   QR I  +  VEG  SPEE++  L+
Sbjct: 69  DVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFLE 122

Length = 122
>gnl|CDD|239256 cd02958, UAS, UAS family; UAS is a domain of unknown function Back     alignment and domain information
>gnl|CDD|239289 cd02991, UAS_ETEA, UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals Back     alignment and domain information
>gnl|CDD|216120 pfam00789, UBX, UBX domain Back     alignment and domain information
>gnl|CDD|176362 cd01767, UBX, UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>gnl|CDD|197552 smart00166, UBX, Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>gnl|CDD|176366 cd01771, Faf1_UBX, Faf1 UBX domain Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|176368 cd01773, Faf1_like1_UBX, Faf1 ike-1 UBX domain Back     alignment and domain information
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional Back     alignment and domain information
>gnl|CDD|176369 cd01774, Faf1_like2_UBX, Faf1 ike-2 UBX domain Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|176367 cd01772, SAKS1_UBX, SAKS1-like UBX domain Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) Back     alignment and domain information
>gnl|CDD|176365 cd01770, p47_UBX, p47-like ubiquitin domain Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|239288 cd02990, UAS_FAF1, UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional Back     alignment and domain information
>gnl|CDD|220331 pfam09660, DUF2397, Protein of unknown function (DUF2397) Back     alignment and domain information
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional Back     alignment and domain information
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
KOG1363460 consensus Predicted regulator of the ubiquitin pat 100.0
cd02991116 UAS_ETEA UAS family, ETEA subfamily; composed of p 99.97
cd02990136 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1 99.97
KOG2507 506 consensus Ubiquitin regulatory protein UBXD2, cont 99.93
smart00594122 UAS UAS domain. 99.93
KOG1364356 consensus Predicted ubiquitin regulatory protein, 99.91
cd02958114 UAS UAS family; UAS is a domain of unknown functio 99.88
cd0177382 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i 99.87
cd0177180 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac 99.87
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 99.84
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 99.83
smart0016680 UBX Domain present in ubiquitin-regulatory protein 99.82
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 99.77
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 99.77
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 99.71
KOG2689290 consensus Predicted ubiquitin regulatory protein [ 99.66
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 99.09
PF1389982 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ 99.03
KOG2086380 consensus Protein tyrosine phosphatase SHP1/Cofact 98.91
cd02951125 SoxW SoxW family; SoxW is a bacterial periplasmic 98.63
cd02960130 AGR Anterior Gradient (AGR) family; members of thi 98.6
cd02955124 SSP411 TRX domain, SSP411 protein family; members 98.5
cd02953104 DsbDgamma DsbD gamma family; DsbD gamma is the C-t 98.29
COG2143182 Thioredoxin-related protein [Posttranslational mod 98.18
PF13098112 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ 98.07
PF03190163 Thioredox_DsbH: Protein of unknown function, DUF25 97.86
PRK00293571 dipZ thiol:disulfide interchange protein precursor 97.84
cd02959117 ERp19 Endoplasmic reticulum protein 19 (ERp19) fam 97.65
cd02950142 TxlA TRX-like protein A (TxlA) family; TxlA was or 97.35
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 97.28
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 97.0
cd0294997 TRX_NTR TRX domain, novel NADPH thioredoxin reduct 96.84
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 96.81
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 96.78
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 96.76
PRK10996139 thioredoxin 2; Provisional 96.74
PTZ0004476 ubiquitin; Provisional 96.69
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 96.64
PF00085103 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio 96.62
cd02997104 PDI_a_PDIR PDIa family, PDIR subfamily; composed o 96.53
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 96.49
cd0295696 ybbN ybbN protein family; ybbN is a hypothetical p 96.47
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 96.39
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 96.35
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 96.3
TIGR01068101 thioredoxin thioredoxin. Several proteins, such as 96.29
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 96.28
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 96.27
TIGR01126102 pdi_dom protein disulfide-isomerase domain. This m 96.11
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 96.09
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 96.08
TIGR00385173 dsbE periplasmic protein thiol:disulfide oxidoredu 96.0
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 95.96
TIGR02739256 TraF type-F conjugative transfer system pilin asse 95.96
cd02961101 PDI_a_family Protein Disulfide Isomerase (PDIa) fa 95.91
cd0294793 TRX_family TRX family; composed of two groups: Gro 95.86
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 95.85
cd03002109 PDI_a_MPD1_like PDI family, MPD1-like subfamily; c 95.78
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 95.77
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 95.75
cd02985103 TRX_CDSP32 TRX family, chloroplastic drought-induc 95.71
cd02963111 TRX_DnaJ TRX domain, DnaJ domain containing protei 95.66
cd0298497 TRX_PICOT TRX domain, PICOT (for PKC-interacting c 95.62
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 95.62
PRK13703248 conjugal pilus assembly protein TraF; Provisional 95.54
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 95.53
cd02993109 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat 95.5
PRK09381109 trxA thioredoxin; Provisional 95.19
cd02948102 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus 94.98
KOG1363460 consensus Predicted regulator of the ubiquitin pat 94.94
PRK03147173 thiol-disulfide oxidoreductase; Provisional 94.91
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 94.88
PF13728215 TraF: F plasmid transfer operon protein 94.81
cd03011123 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso 94.71
cd03000104 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o 94.65
COG4232569 Thiol:disulfide interchange protein [Posttranslati 94.39
cd02995104 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain 94.38
cd02996108 PDI_a_ERp44 PDIa family, endoplasmic reticulum pro 94.37
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.02
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 93.91
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 93.87
TIGR02740271 TraF-like TraF-like protein. This protein is relat 93.69
cd03003101 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam 93.64
PRK15412185 thiol:disulfide interchange protein DsbE; Provisio 93.62
cd03004104 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam 93.54
cd03065120 PDI_b_Calsequestrin_N PDIb family, Calsequestrin s 93.41
PTZ00443224 Thioredoxin domain-containing protein; Provisional 93.37
cd02999100 PDI_a_ERp44_like PDIa family, endoplasmic reticulu 93.37
cd03001103 PDI_a_P5 PDIa family, P5 subfamily; composed of eu 93.31
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 93.22
cd03006113 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil 93.18
PTZ0005198 thioredoxin; Provisional 93.13
PHA02278103 thioredoxin-like protein 93.08
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 93.01
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 92.99
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 92.87
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 92.85
TIGR00601 378 rad23 UV excision repair protein Rad23. All protei 92.81
COG1331 667 Highly conserved protein containing a thioredoxin 92.77
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 92.48
cd02998105 PDI_a_ERp38 PDIa family, endoplasmic reticulum pro 92.45
cd03005102 PDI_a_ERp46 PDIa family, endoplasmic reticulum pro 92.35
KOG0910150 consensus Thioredoxin-like protein [Posttranslatio 92.34
cd02975113 PfPDO_like_N Pyrococcus furiosus protein disulfide 92.04
cd02994101 PDI_a_TMX PDIa family, TMX subfamily; composed of 92.01
PF1483688 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A 91.83
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 91.78
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 91.65
PLN00410142 U5 snRNP protein, DIM1 family; Provisional 91.34
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 91.2
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 91.0
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 90.84
cd02986114 DLP Dim1 family, Dim1-like protein (DLP) subfamily 90.71
cd02982103 PDI_b'_family Protein Disulfide Isomerase (PDIb') 90.68
TIGR01295122 PedC_BrcD bacteriocin transport accessory protein, 90.61
KOG2086380 consensus Protein tyrosine phosphatase SHP1/Cofact 90.55
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 90.49
cd02957113 Phd_like Phosducin (Phd)-like family; composed of 90.47
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 90.22
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 89.82
PTZ00102 477 disulphide isomerase; Provisional 89.64
cd03010127 TlpA_like_DsbE TlpA-like family, DsbE (also known 89.39
cd02989113 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior 89.28
cd02965111 HyaE HyaE family; HyaE is also called HupG and Hox 89.19
cd02954114 DIM1 Dim1 family; Dim1 is also referred to as U5 s 88.72
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 88.68
cd02966116 TlpA_like_family TlpA-like family; composed of Tlp 88.55
TIGR01130 462 ER_PDI_fam protein disulfide isomerases, eukaryoti 88.27
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 88.22
PTZ00266 1021 NIMA-related protein kinase; Provisional 87.78
KOG0907106 consensus Thioredoxin [Posttranslational modificat 87.72
KOG4351244 consensus Uncharacterized conserved protein [Funct 87.68
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.57
PRK11509132 hydrogenase-1 operon protein HyaE; Provisional 87.3
smart0054643 CUE Domain that may be involved in binding ubiquit 86.97
cd02992114 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas 86.93
TIGR00424463 APS_reduc 5'-adenylylsulfate reductase, thioredoxi 86.8
TIGR02738153 TrbB type-F conjugative transfer system pilin asse 85.88
cd02969171 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot 84.88
cd02987175 Phd_like_Phd Phosducin (Phd)-like family, Phd subf 84.25
cd03009131 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family 82.46
PTZ00062204 glutaredoxin; Provisional 81.64
PF0881779 YukD: WXG100 protein secretion system (Wss), prote 81.14
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-45  Score=380.82  Aligned_cols=298  Identities=36%  Similarity=0.565  Sum_probs=244.5

Q ss_pred             hHHHHHH-HHHHHHHhhCCCCCCccccCHHHHHHHHHh-c---CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccc
Q 012346          148 AALEAME-FVAVFERDYGNVKPNFVSEGFMDALQRSRS-V---FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENF  222 (465)
Q Consensus       148 ~~~~~~~-f~~~~~~~yg~~~p~f~~gs~~eAl~~Ak~-e---~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~f  222 (465)
                      +.+++.. |+++|.++||..||.||.|++..|...|.+ +   .|+|++|+|++.+.++..||..+|||+.|++||+++|
T Consensus       139 p~~~~~~~f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~  218 (460)
T KOG1363|consen  139 PQGDSRETFVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENF  218 (460)
T ss_pred             CcchHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhce
Confidence            4556665 999999999999999999998888877743 3   6999999999999999999999999999999999999


Q ss_pred             eEeecccCchHHHHHHHhCCCC----------------CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346          223 VSWGGSIRASEGFKMSNSLKAS----------------RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES  286 (465)
Q Consensus       223 v~w~~~v~~~Eg~~va~~l~~~----------------~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~  286 (465)
                      |+|+|||++++++.+++.+++.                .||.+.+|.... ...+++..++|.++..+.+..+..++..+
T Consensus       219 llw~~dvt~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~-~~~Ell~~l~g~~~~~e~~~~~~~~~~~~  297 (460)
T KOG1363|consen  219 LLWGWDVTESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSR-SPEELLRYLQGVTGVDEEMTLLLVAFEEE  297 (460)
T ss_pred             eeecccccCchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCC-CHHHHHHHHHhcCCchHHHHHHHhhhhhh
Confidence            9999999999999999999887                688888888653 45678888889999999999888888888


Q ss_pred             cHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012346          287 NPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAA  366 (465)
Q Consensus       287 ~~~L~~~r~e~~er~~~r~lreeQd~aY~~SL~~D~ek~~~r~ee~e~~~~~~~e~e~k~~eeee~~~~~~~e~~~~~~~  366 (465)
                      ...+...+.++.++..+..+++|||.+|++||++|+.|+.++.   ++.+++..  ++++++++          ++++  
T Consensus       298 ~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e---~~~e~~r~--e~er~~~~----------ee~e--  360 (460)
T KOG1363|consen  298 ERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAE---QAAEEFRL--EKERKEEE----------EERE--  360 (460)
T ss_pred             hHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHHHH--hhhhhhHH----------HHHH--
Confidence            7777666666667776677788899999999999999822111   11111111  11111111          1111  


Q ss_pred             HHHHHHHHHHhcCCCCCC-CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCc
Q 012346          367 LAKMRQEKALSLGAEPEK-GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKF  445 (465)
Q Consensus       367 ~~~~r~~~~~~lp~EP~~-~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~  445 (465)
                      ..+++.+..+.+|+||++ ..++++|+||+|+|.|..|||.+++++++||+||++++. .+..|.++++|||+.+.....
T Consensus       361 ~~R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~~-~~~e~~~~~~fPr~~~~~~~~  439 (460)
T KOG1363|consen  361 TARQLLALESSLPPEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNGF-HPEEYSLNTSFPRRPLGDYEH  439 (460)
T ss_pred             HHHHHHhhhccCCCCCCcCcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhccC-CchhhccccCCCccccccccc
Confidence            223566778899999943 578899999999999999999999999999999999994 678999999999999998878


Q ss_pred             cCcccccCCCC-CeeEEEEe
Q 012346          446 SLSLKEAGLHP-QASLFVEL  464 (465)
Q Consensus       446 ~~TL~e~gL~p-~~~L~ve~  464 (465)
                      ..||++.||+| +++|+||.
T Consensus       440 ~~sl~~~~l~p~qe~lflE~  459 (460)
T KOG1363|consen  440 SSSLQDIGLTPRQETLFLEE  459 (460)
T ss_pred             ccccccCCcccccceeeeec
Confidence            99999999999 99999986

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals Back     alignment and domain information
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain Back     alignment and domain information
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] Back     alignment and domain information
>smart00594 UAS UAS domain Back     alignment and domain information
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02958 UAS UAS family; UAS is a domain of unknown function Back     alignment and domain information
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain Back     alignment and domain information
>cd01771 Faf1_UBX Faf1 UBX domain Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A Back     alignment and domain information
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] Back     alignment and domain information
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation Back     alignment and domain information
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus Back     alignment and domain information
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif Back     alignment and domain information
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD Back     alignment and domain information
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A Back     alignment and domain information
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins Back     alignment and domain information
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional Back     alignment and domain information
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain Back     alignment and domain information
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>PRK10996 thioredoxin 2; Provisional Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms Back     alignment and domain information
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>TIGR01068 thioredoxin thioredoxin Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>TIGR01126 pdi_dom protein disulfide-isomerase domain Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF Back     alignment and domain information
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif Back     alignment and domain information
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain Back     alignment and domain information
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>PRK13703 conjugal pilus assembly protein TraF; Provisional Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases Back     alignment and domain information
>PRK09381 trxA thioredoxin; Provisional Back     alignment and domain information
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein Back     alignment and domain information
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] Back     alignment and domain information
>PRK03147 thiol-disulfide oxidoreductase; Provisional Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>PF13728 TraF: F plasmid transfer operon protein Back     alignment and domain information
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif Back     alignment and domain information
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus Back     alignment and domain information
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Back     alignment and domain information
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 Back     alignment and domain information
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>TIGR02740 TraF-like TraF-like protein Back     alignment and domain information
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional Back     alignment and domain information
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle Back     alignment and domain information
>PTZ00443 Thioredoxin domain-containing protein; Provisional Back     alignment and domain information
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 Back     alignment and domain information
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox Back     alignment and domain information
>PTZ00051 thioredoxin; Provisional Back     alignment and domain information
>PHA02278 thioredoxin-like protein Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 Back     alignment and domain information
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains Back     alignment and domain information
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding Back     alignment and domain information
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX Back     alignment and domain information
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>PLN00410 U5 snRNP protein, DIM1 family; Provisional Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 Back     alignment and domain information
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative Back     alignment and domain information
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PTZ00102 disulphide isomerase; Provisional Back     alignment and domain information
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif Back     alignment and domain information
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif Back     alignment and domain information
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO Back     alignment and domain information
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins Back     alignment and domain information
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein Back     alignment and domain information
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent Back     alignment and domain information
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB Back     alignment and domain information
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs Back     alignment and domain information
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions Back     alignment and domain information
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif Back     alignment and domain information
>PTZ00062 glutaredoxin; Provisional Back     alignment and domain information
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2ec4_A178 Solution Structure Of The Uas Domain From Human Fas 1e-07
3qq8_B85 Crystal Structure Of P97-N In Complex With Faf1-Ubx 1e-06
1h8c_A82 Ubx Domain From Human Faf1 Length = 82 2e-06
3qca_A84 Crystal Structure Of Faf1 Ubx Domain In Complex Wit 2e-06
3qx1_A84 Crystal Structure Of Faf1 Ubx Domain Length = 84 3e-06
1wj4_A124 Solution Structure Of The Ubx Domain Of Kiaa0794 Pr 3e-06
3qwz_B84 Crystal Structure Of Faf1 Ubx-P97n-Domain Complex L 3e-06
>pdb|2EC4|A Chain A, Solution Structure Of The Uas Domain From Human Fas- Associated Factor 1 Length = 178 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 131 NSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNF----VSEGFMDALQRSRSVF 186
           +SG SGE+    A     AL  ++F A F   YG+  P F    +   F +A        
Sbjct: 2   SSGSSGEN----AENEGDAL--LQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDR 55
Query: 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG----FKMSN--- 239
           KLL +YLH  +   T  FC   LC E + +++++NF++W   +           M N   
Sbjct: 56  KLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHF 115
Query: 240 ---------SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284
                    + K  ++P   ++M   +    +L  ++G  + +E++M L   +E
Sbjct: 116 GSVVAQTIRTQKTDQFPLFLIIMGKRSSN-EVLNVIQGNTTVDELMMRLMAAME 168
>pdb|3QQ8|B Chain B, Crystal Structure Of P97-N In Complex With Faf1-Ubx Length = 85 Back     alignment and structure
>pdb|1H8C|A Chain A, Ubx Domain From Human Faf1 Length = 82 Back     alignment and structure
>pdb|3QCA|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn Motif Of Ubx Domain Suffering Conformational Change Length = 84 Back     alignment and structure
>pdb|3QX1|A Chain A, Crystal Structure Of Faf1 Ubx Domain Length = 84 Back     alignment and structure
>pdb|1WJ4|A Chain A, Solution Structure Of The Ubx Domain Of Kiaa0794 Protein Length = 124 Back     alignment and structure
>pdb|3QWZ|B Chain B, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2ec4_A178 FAS-associated factor 1; UAS domain, protein FAF1, 5e-40
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 9e-29
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 9e-27
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 7e-26
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 6e-22
2dlx_A153 UBX domain-containing protein 7; UAS domain, prote 4e-19
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 2e-11
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 2e-11
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-10
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-05
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 4e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 3e-04
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 178 Back     alignment and structure
 Score =  141 bits (355), Expect = 5e-40
 Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%)

Query: 136 GESSTRLASVSAAALEAMEFVAVFERDYGNVKPNF----VSEGFMDALQRSRSVFKLLFV 191
           G S +   +        ++F A F   YG+  P F    +   F +A        KLL +
Sbjct: 1   GSSGSSGENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAI 60

Query: 192 YLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF---------------- 235
           YLH  +   T  FC   LC E + +++++NF++W   +                      
Sbjct: 61  YLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVA 120

Query: 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQ 292
           +   + K  ++P   ++M   +    +L  ++G  + +E++M L   +E       +
Sbjct: 121 QTIRTQKTDQFPLFLIIMGKRS-SNEVLNVIQGNTTVDELMMRLMAAMEIFTAQQQE 176
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Length = 124 Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109 Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Length = 84 Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Length = 109 Back     alignment and structure
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 67 Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Length = 127 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Length = 45 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Length = 46 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
2ec4_A178 FAS-associated factor 1; UAS domain, protein FAF1, 100.0
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 99.85
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 99.83
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 99.81
2dlx_A153 UBX domain-containing protein 7; UAS domain, prote 99.78
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 99.77
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 99.64
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 99.39
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 99.19
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 99.13
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 98.86
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 98.85
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 98.66
2kuc_A130 Putative disulphide-isomerase; structural genomics 98.61
2ju5_A154 Thioredoxin disulfide isomerase; protein, oxidored 98.53
3f9u_A172 Putative exported cytochrome C biogenesis-related; 98.51
2lst_A130 Thioredoxin; structural genomics, NEW YORK structu 97.88
3ph9_A151 Anterior gradient protein 3 homolog; thioredoxin f 98.29
3fk8_A133 Disulphide isomerase; APC61824.1, xylella fastidio 98.05
3ira_A173 Conserved protein; methanosarcina mazei,structural 97.96
2fwh_A134 Thiol:disulfide interchange protein DSBD; thioredo 97.88
3bq3_A270 Defective in cullin neddylation protein 1; ubiquit 97.55
2pjh_A80 Protein NPL4, nuclear protein localization protein 97.44
1ep7_A112 Thioredoxin CH1, H-type; electron transport; 2.10A 97.42
1thx_A115 Thioredoxin, thioredoxin 2; oxido-reductase, elect 97.39
3tco_A109 Thioredoxin (TRXA-1); disulfide oxidoreductase, ox 97.31
2vm1_A118 Thioredoxin, thioredoxin H isoform 1.; oxidoreduct 97.26
1xfl_A124 Thioredoxin H1; AT3G51030, structural genomics, pr 97.26
2l57_A126 Uncharacterized protein; structural genomics, unkn 97.26
2voc_A112 Thioredoxin; electron transport, homodimer, disulf 97.24
2e0q_A104 Thioredoxin; electron transport; 1.49A {Sulfolobus 97.23
2yzu_A109 Thioredoxin; redox protein, electron transport, st 97.22
3gnj_A111 Thioredoxin domain protein; APC92103, STR genomics 97.21
1w4v_A119 Thioredoxin, mitochondrial; antioxidant enzyme, mi 97.2
2i4a_A107 Thioredoxin; acidophIle, disulfide exchange, oxido 97.19
3die_A106 Thioredoxin, TRX; electron transport, SWAP domain, 97.17
1ti3_A113 Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul 97.11
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 97.1
1nsw_A105 Thioredoxin, TRX; thermostability, electron transp 97.09
2trx_A108 Thioredoxin; electron transport; 1.68A {Escherichi 97.09
2vlu_A122 Thioredoxin, thioredoxin H isoform 2.; oxidoreduct 97.07
3p2a_A148 Thioredoxin 2, putative thioredoxin-like protein; 97.03
3v6c_B91 Ubiquitin; structural genomics, structural genomic 97.03
3dml_A116 Putative uncharacterized protein; thioredoxin, oxi 97.03
3d22_A139 TRXH4, thioredoxin H-type; electron transport, cyt 97.03
2dml_A130 Protein disulfide-isomerase A6; thioredoxin domain 97.02
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 97.02
1dby_A107 Chloroplast thioredoxin M CH2; thioredoxin CH2, ch 97.01
3hxs_A141 Thioredoxin, TRXP; electron transport; 2.00A {Bact 96.99
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 96.96
2ppt_A155 Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc 96.94
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 96.92
2f51_A118 Thioredoxin; electron transport; 1.90A {Trichomona 96.92
3m9j_A105 Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} 96.92
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 96.91
1fb6_A105 Thioredoxin M; electron transport; 2.10A {Spinacia 96.9
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 96.88
3qfa_C116 Thioredoxin; protein-protein complex, rossmann fol 96.87
3hz4_A140 Thioredoxin; NYSGXRC, PSI-II, reduced form, protei 96.85
1t00_A112 Thioredoxin, TRX; redox regulation, multifunction 96.84
2o8v_B128 Thioredoxin 1; disulfide crosslinked complex, oxid 96.82
1xwb_A106 Thioredoxin; dimerization, redox regulation, THI X 96.8
2j23_A121 Thioredoxin; immune protein, autoreactivity, cross 96.8
3ul3_B128 Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 96.78
3d6i_A112 Monothiol glutaredoxin-3; thioredoxin-like, electr 96.78
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 96.77
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 96.76
1syr_A112 Thioredoxin; SGPP, structural genomics, PSI, prote 96.76
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 96.75
3aps_A122 DNAJ homolog subfamily C member 10; thioredoxin fo 96.73
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 96.7
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 96.7
1x5d_A133 Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC 96.69
2i1u_A121 Thioredoxin, TRX, MPT46; redox protein, electron t 96.68
2l5l_A136 Thioredoxin; structural genomics, electron transpo 96.65
1sen_A164 Thioredoxin-like protein P19; endoplasmic reticulu 96.62
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 96.62
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 96.6
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 96.6
2b5x_A148 YKUV protein, TRXY; thioredoxin-like, oxidoreducta 96.6
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 96.59
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 96.54
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 96.54
2dj1_A140 Protein disulfide-isomerase A4; protein ERP-72, ER 96.53
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 96.53
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 96.49
3f3q_A109 Thioredoxin-1; His TAG, electron transport, cytopl 96.49
1zma_A118 Bacterocin transport accessory protein; alpha-beta 96.46
1r26_A125 Thioredoxin; redox-active disulfide, electron tran 96.45
2vim_A104 Thioredoxin, TRX; thioredoxin fold, oxidoreductase 96.44
2f9s_A151 Thiol-disulfide oxidoreductase RESA; thioredoxin-l 96.42
2lja_A152 Putative thiol-disulfide oxidoreductase; structura 96.41
2l5o_A153 Putative thioredoxin; structural genomics, unknown 96.4
3zzx_A105 Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va 96.39
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 96.37
4euy_A105 Uncharacterized protein; structural genomics, PSI- 96.36
1kng_A156 Thiol:disulfide interchange protein CYCY; thioredo 96.36
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 96.35
3gl3_A152 Putative thiol:disulfide interchange protein DSBE; 96.34
3uvt_A111 Thioredoxin domain-containing protein 5; thioredox 96.33
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 96.31
1gh2_A107 Thioredoxin-like protein; redox-active center, ele 96.3
1v98_A140 Thioredoxin; oxidoreductase, structural genomics, 96.3
1zzo_A136 RV1677; thioredoxin fold, structural genomics, PSI 96.28
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 96.27
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 96.25
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 96.25
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 96.24
1oaz_A123 Thioredoxin 1; immune system, antibody/complex, an 96.23
2oe3_A114 Thioredoxin-3; electron transport, alpha/beta sand 96.21
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 96.18
3hcz_A148 Possible thiol-disulfide isomerase; APC61559.2, cy 96.16
3kcm_A154 Thioredoxin family protein; SGX, thioredoxin prote 96.16
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.14
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 96.13
1wmj_A130 Thioredoxin H-type; structural genomics, program f 96.12
2xc2_A117 Thioredoxinn; oxidoreductase, protein disulfide re 96.09
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.09
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 96.09
1we6_A111 Splicing factor, putative; structural genomics, ub 96.04
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 96.03
3raz_A151 Thioredoxin-related protein; structural genomics, 96.03
1lu4_A136 Soluble secreted antigen MPT53; thioredoxin-like f 96.01
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 96.0
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 96.0
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 95.98
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 95.96
2l6c_A110 Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu 95.94
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 95.93
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 95.91
3kh7_A176 Thiol:disulfide interchange protein DSBE; TRX-like 95.9
3lor_A160 Thiol-disulfide isomerase and thioredoxins; PSI, M 95.88
2wz9_A153 Glutaredoxin-3; protein binding; 1.55A {Homo sapie 95.88
3erw_A145 Sporulation thiol-disulfide oxidoreductase A; thio 95.87
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 95.86
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 95.85
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 95.85
2yj7_A106 LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti 94.83
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 95.8
3or5_A165 Thiol:disulfide interchange protein, thioredoxin p 95.8
1wji_A63 Tudor domain containing protein 3; UBA domain, str 95.77
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 95.74
3cxg_A133 Putative thioredoxin; malaria, structural GEN oxid 95.72
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 95.72
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 95.7
2b1k_A168 Thiol:disulfide interchange protein DSBE; C-termin 95.67
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 95.67
4evm_A138 Thioredoxin family protein; structural genomics, n 95.67
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 95.67
1faa_A124 Thioredoxin F; electron transport; 1.85A {Spinacia 95.66
3m62_B106 UV excision repair protein RAD23; armadillo-like r 95.64
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 95.63
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 95.63
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 95.63
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 95.62
1mek_A120 Protein disulfide isomerase; electron transport, r 95.59
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 95.56
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 95.56
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 95.52
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 95.52
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 95.51
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 95.51
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 95.47
2ggt_A164 SCO1 protein homolog, mitochondrial; copper chaper 95.41
3fkf_A148 Thiol-disulfide oxidoreductase; structural genomic 95.38
2dj3_A133 Protein disulfide-isomerase A4; protein ERP-72, ER 95.38
2pu9_C111 TRX-F, thioredoxin F-type, chloroplast; protein-pr 95.38
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 95.36
3gix_A149 Thioredoxin-like protein 4B; PRE-mRNA splicing, TX 95.35
3dxb_A222 Thioredoxin N-terminally fused to PUF60(UHM); spli 95.31
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 95.28
3q6o_A244 Sulfhydryl oxidase 1; protein disulfide isomerase, 95.27
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 95.22
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 95.22
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 95.2
3emx_A135 Thioredoxin; structural genomics, oxidoreductase, 95.19
3ia1_A154 THIO-disulfide isomerase/thioredoxin; oxidoreducta 95.11
2djj_A121 PDI, protein disulfide-isomerase; thioredoxin fold 95.1
3lwa_A183 Secreted thiol-disulfide isomerase; thioredoxin, P 95.04
1jfu_A186 Thiol:disulfide interchange protein TLPA; thioredo 95.02
2lrn_A152 Thiol:disulfide interchange protein; structural ge 95.01
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 95.0
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 94.94
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 94.93
2kj6_A97 Tubulin folding cofactor B; methods development, N 94.91
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 94.86
2dj0_A137 Thioredoxin-related transmembrane protein 2; AVLA2 94.83
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 94.82
3eyt_A158 Uncharacterized protein SPOA0173; thioredoxin-like 94.75
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 94.72
1qgv_A142 Spliceosomal protein U5-15KD; snRNP, thioredoxin, 94.62
2l2d_A73 OTU domain-containing protein 7A; UBA fold, struct 94.59
1nho_A85 Probable thioredoxin; beta sheet, alpha helix, oxi 94.57
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 93.58
3h79_A127 Thioredoxin-like protein; thioredoxin fold, cataly 94.55
1a8l_A226 Protein disulfide oxidoreductase; PDI, thioredoxin 94.53
3ed3_A298 Protein disulfide-isomerase MPD1; thioredoxin-like 94.53
2rli_A171 SCO2 protein homolog, mitochondrial; copper protei 94.46
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 94.45
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 94.38
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 94.37
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 94.31
3fw2_A150 Thiol-disulfide oxidoreductase; structural genomic 94.3
2h30_A164 Thioredoxin, peptide methionine sulfoxide reductas 94.29
3ewl_A142 Uncharacterized conserved protein BF1870; alpha-be 94.28
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 94.28
2cwb_A108 Chimera of immunoglobulin G binding protein G and 94.26
3idv_A241 Protein disulfide-isomerase A4; thioredoxin-like f 94.18
3hdc_A158 Thioredoxin family protein; ATCC53774, DSM 7210, , 94.11
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 94.06
3ha9_A165 Uncharacterized thioredoxin-like protein; PSI, MCS 94.02
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 93.97
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 93.97
1x5e_A126 Thioredoxin domain containing protein 1; TMX, TXND 93.93
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 93.91
3t58_A 519 Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. 93.86
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 93.82
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 93.76
2lrt_A152 Uncharacterized protein; structural genomics, thio 93.71
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 93.65
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 93.52
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 93.39
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 93.37
2dbc_A135 PDCL2, unnamed protein product; phosducin-like pro 93.3
1fo5_A85 Thioredoxin; disulfide oxidoreductase, structural 93.3
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 93.13
2qsi_A137 Putative hydrogenase expression/formation protein; 93.12
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 93.11
3idv_A241 Protein disulfide-isomerase A4; thioredoxin-like f 93.07
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 92.89
2b5e_A 504 Protein disulfide-isomerase; 2.40A {Saccharomyces 92.73
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 92.59
2hyx_A352 Protein DIPZ; thioredoxin fold, jelly-roll, struct 92.5
3f8u_A 481 Protein disulfide-isomerase A3ERP57; endoplasmic r 92.38
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 92.37
2qgv_A140 Hydrogenase-1 operon protein HYAE; alpha-beta prot 92.33
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 92.31
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 91.49
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 92.12
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 92.11
3eur_A142 Uncharacterized protein; PSI2,MCSG, conserved prot 91.95
2ywi_A196 Hypothetical conserved protein; uncharacterized co 91.82
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 91.78
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 91.74
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 91.68
2r2j_A382 Thioredoxin domain-containing protein 4; CRFS moti 91.66
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 91.5
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 91.48
1oqy_A 368 HHR23A, UV excision repair protein RAD23 homolog A 91.42
2es7_A142 Q8ZP25_salty, putative thiol-disulfide isomerase a 91.39
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 91.31
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 90.97
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 90.89
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 90.8
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 90.77
1o73_A144 Tryparedoxin; electron transport, trypanosomatid, 90.74
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 90.46
1o8x_A146 Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot 90.13
2ywm_A229 Glutaredoxin-like protein; redox protein, structur 90.12
1i5g_A144 Tryparedoxin II; electron transport; HET: TS5; 1.4 89.98
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 89.97
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 89.97
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 89.88
4f9z_D227 Endoplasmic reticulum resident protein 27; thiored 89.75
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 89.62
3drn_A161 Peroxiredoxin, bacterioferritin comigratory prote 89.62
2av4_A160 Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI 89.49
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 89.47
1zof_A198 Alkyl hydroperoxide-reductase; decamer, toroide-sh 89.39
3s9f_A165 Tryparedoxin; thioredoxin fold, disulfide reductas 89.36
2bmx_A195 Alkyl hydroperoxidase C; peroxiredoxin, antioxidan 89.34
3f8u_A481 Protein disulfide-isomerase A3ERP57; endoplasmic r 89.27
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 89.22
1we0_A187 Alkyl hydroperoxide reductase C; peroxiredoxin, AH 89.21
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 89.2
3iv4_A112 Putative oxidoreductase; APC23140, meticillin-resi 89.12
1sji_A350 Calsequestrin 2, calsequestrin, cardiac muscle iso 89.02
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 88.95
2daj_A91 KIAA0977 protein, COBL-like 1; ubiquitin-like doma 88.85
2dna_A67 Unnamed protein product; ubiquitin associated doma 88.84
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 88.8
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 88.74
2cvb_A188 Probable thiol-disulfide isomerase/thioredoxin; re 88.7
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 88.67
1wou_A123 Thioredoxin -related protein, 14 kDa; electron tra 88.67
3us3_A367 Calsequestrin-1; calcium-binding protein; 1.74A {O 88.1
1a8l_A226 Protein disulfide oxidoreductase; PDI, thioredoxin 87.77
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 87.57
4fo5_A143 Thioredoxin-like protein; AHPC/TSA family protein, 87.56
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 87.53
2h01_A192 2-Cys peroxiredoxin; thioredoxin peroxidase, struc 87.45
3kp8_A106 Vkorc1/thioredoxin domain protein; blood coagulati 87.31
1ilo_A77 Conserved hypothetical protein MTH895; beta-alpha- 87.3
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 87.05
3uem_A361 Protein disulfide-isomerase; thioredoxin-like doma 86.96
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 86.84
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 86.38
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 86.26
2trc_P217 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 86.05
3uem_A361 Protein disulfide-isomerase; thioredoxin-like doma 85.97
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 85.73
1xvw_A160 Hypothetical protein RV2238C/MT2298; thioredoxin f 85.61
2b7k_A200 SCO1 protein; metallochaperone, cytochrome C oxida 85.48
1a0r_P245 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 85.2
1uul_A202 Tryparedoxin peroxidase homologue; peroxiredoxin, 85.18
3shq_A 320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 85.17
2k6v_A172 Putative cytochrome C oxidase assembly protein; th 85.16
3evi_A118 Phosducin-like protein 2; alpha beta, 3-layer(ABA) 84.9
1zye_A220 Thioredoxin-dependent peroxide reductase; catenane 84.67
2djk_A133 PDI, protein disulfide-isomerase; thioredoxin fold 84.33
2fnj_B118 Transcription elongation factor B polypeptide 2; b 84.26
2i81_A213 2-Cys peroxiredoxin; structural genomics consortiu 83.97
4a3p_A217 Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H 83.35
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 82.42
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 82.09
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 81.99
3qcp_A 470 QSOX from trypanosoma brucei (tbqsox); ERV fold, t 81.9
2c0g_A248 ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, 81.77
2qc7_A240 ERP31, ERP28, endoplasmic reticulum protein ERP29; 81.74
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 81.34
3jyu_A231 Ubiquitin carboxyl-terminal hydrolase; domain in u 81.29
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 81.27
1qmv_A197 Human thioredoxin peroxidase-B; peroxiredoxin, sul 80.41
2ls5_A159 Uncharacterized protein; structural genomics, unkn 81.05
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.7e-35  Score=268.31  Aligned_cols=146  Identities=23%  Similarity=0.481  Sum_probs=138.1

Q ss_pred             ccchhHHHHHHHHHHHHHhhCCCCCCccccCHHHHHHHH----HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh
Q 012346          144 SVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRS----RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN  219 (465)
Q Consensus       144 ~~~~~~~~~~~f~~~~~~~yg~~~p~f~~gs~~eAl~~A----k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~  219 (465)
                      .+.||.+++.+|+++|+++||..||+||+|+|++|++.|    +++.|||+||||+++|.+|+.||++||||++|+++|+
T Consensus         9 ~~~dp~~~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~   88 (178)
T 2ec4_A            9 NAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS   88 (178)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH
Confidence            346778899999999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             ccceEeecccCchH-------------HHHHHHh---CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346          220 ENFVSWGGSIRASE-------------GFKMSNS---LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI  283 (465)
Q Consensus       220 ~~fv~w~~~v~~~E-------------g~~va~~---l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~  283 (465)
                      +|||+|+||++++|             |+++++.   |++++||+++||+++ +++|+++.+++|.+++++|++.|+.++
T Consensus        89 ~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~-~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A           89 QNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK-RSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC-SSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             cCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC-CCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            99999999999999             6788866   899999999999986 668999999999999999999999999


Q ss_pred             HhhcHHH
Q 012346          284 EESNPAL  290 (465)
Q Consensus       284 ~~~~~~L  290 (465)
                      +++.++|
T Consensus       168 e~~~~~l  174 (178)
T 2ec4_A          168 EIFTAQQ  174 (178)
T ss_dssp             HHHHHHS
T ss_pred             HHhhHhh
Confidence            9998765
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Back     alignment and structure
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Back     alignment and structure
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A Back     alignment and structure
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Back     alignment and structure
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} Back     alignment and structure
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Back     alignment and structure
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Back     alignment and structure
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Back     alignment and structure
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Back     alignment and structure
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Back     alignment and structure
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Back     alignment and structure
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Back     alignment and structure
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Back     alignment and structure
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 Back     alignment and structure
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Back     alignment and structure
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Back     alignment and structure
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Back     alignment and structure
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Back     alignment and structure
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Back     alignment and structure
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Back     alignment and structure
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Back     alignment and structure
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Back     alignment and structure
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Back     alignment and structure
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Back     alignment and structure
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Back     alignment and structure
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Back     alignment and structure
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Back     alignment and structure
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Back     alignment and structure
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Back     alignment and structure
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Back     alignment and structure
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Back     alignment and structure
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Back     alignment and structure
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Back     alignment and structure
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Back     alignment and structure
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Back     alignment and structure
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Back     alignment and structure
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Back     alignment and structure
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Back     alignment and structure
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Back     alignment and structure
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Back     alignment and structure
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Back     alignment and structure
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Back     alignment and structure
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Back     alignment and structure
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Back     alignment and structure
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Back     alignment and structure
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Back     alignment and structure
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Back     alignment and structure
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Back     alignment and structure
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Back     alignment and structure
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Back     alignment and structure
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A Back     alignment and structure
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Back     alignment and structure
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Back     alignment and structure
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Back     alignment and structure
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Back     alignment and structure
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A Back     alignment and structure
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Back     alignment and structure
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Back     alignment and structure
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Back     alignment and structure
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Back     alignment and structure
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Back     alignment and structure
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Back     alignment and structure
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Back     alignment and structure
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Back     alignment and structure
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Back     alignment and structure
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Back     alignment and structure
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Back     alignment and structure
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Back     alignment and structure
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Back     alignment and structure
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Back     alignment and structure
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Back     alignment and structure
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Back     alignment and structure
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Back     alignment and structure
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Back     alignment and structure
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Back     alignment and structure
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Back     alignment and structure
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Back     alignment and structure
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Back     alignment and structure
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d1h8ca_82 d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human 1e-19
d1wj4a_124 d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human 6e-18
d2cr5a196 d.15.1.2 (A:8-103) UBX domain-containing protein 6 2e-17
d1i42a_89 d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 5e-13
d1v92a_46 a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA- 6e-06
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 7e-06
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 9e-05
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 6e-04
d1sa0e_138 a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus 2e-05
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 9e-05
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 1e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 3e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.001
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFS 446
            V+++ +R P+GE  ERRF ++  +Q+++D+V S G      Y L+S FPR   +    +
Sbjct: 4   PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGF-PWDEYKLLSTFPRRDVTQLDPN 62

Query: 447 LSLKEAGLHPQASLFVE 463
            SL E  L PQ +LF+E
Sbjct: 63  KSLLEVKLFPQETLFLE 79
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89 Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d2dlxa1147 UBX domain-containing protein 7 {Human (Homo sapie 99.85
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 99.84
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 99.83
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 99.79
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.69
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 99.29
d1s3si_50 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 98.35
d2fwha1117 Thiol:disulfide interchange protein DsbD, C-termin 98.32
d1sena_135 Thioredoxin-like protein p19, TLP19 {Human (Homo s 98.27
d1ep7a_112 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 97.5
d1xfla_114 Thioredoxin {Thale cress (Arabidopsis thaliana) [T 97.4
d1thxa_108 Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} 97.34
d1dbya_107 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 96.96
d1fb6a_104 Thioredoxin {Spinach (Spinacia oleracea), thioredo 96.94
d1nw2a_105 Thioredoxin {Alicyclobacillus acidocaldarius, form 96.92
d2trxa_108 Thioredoxin {Escherichia coli [TaxId: 562]} 96.88
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 96.8
d1f9ma_112 Thioredoxin {Spinach (Spinacia oleracea), thioredo 96.77
d1a8la2107 Protein disulfide isomerase, PDI {Archaeon Pyrococ 96.71
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 96.68
d1ti3a_113 Thioredoxin {European aspen (Populus tremula), thi 96.65
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 96.65
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 96.6
d2ifqa1105 Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} 96.49
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 96.47
d1gh2a_107 Thioredoxin-like protein, N-terminal domain {Human 96.42
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 96.38
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 96.37
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 96.35
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 96.26
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 96.24
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 96.23
d1xwaa_111 Thioredoxin {Fruit fly (Drosophila melanogaster) [ 96.23
d1z5ye1136 Thioredoxin-like protein CcmG (CycY, DsbE) {Escher 96.17
d1r26a_113 Thioredoxin {Trypanosoma brucei [TaxId: 5691]} 96.14
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 96.09
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 95.95
d1zmaa1115 Bacterocin transport accessory protein Bta {Strept 95.94
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 95.87
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 95.84
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 95.71
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 95.64
d1knga_144 Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr 95.62
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 95.44
d2b5ea4119 Protein disulfide isomerase, PDI {Baker's yeast (S 95.27
d2hfda1132 Hydrogenase-1 operon protein HyaE {Escherichia col 95.26
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 95.24
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 95.21
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 95.17
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 95.15
d2es7a1119 Hydrogenase-1 operon protein HyaE {Salmonella typh 95.11
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 95.04
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 95.02
d1syra_103 Thioredoxin {Malarial parasite (Plasmodium falcipa 94.89
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 94.79
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 94.72
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 94.66
d1st9a_137 Thiol-disulfide oxidoreductase ResA {Bacillus subt 94.63
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 94.6
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 94.35
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 94.31
d1meka_120 Protein disulfide isomerase, PDI {Human (Homo sapi 94.26
d1fo5a_85 MJ0307, thioredoxin/glutaredoxin-like protein {Arc 94.25
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 94.18
d1lu4a_134 Soluble secreted antigen MPT53 {Mycobacterium tube 94.06
d1qgva_137 spliceosomal protein U5-15Kd {Human (Homo sapiens) 93.77
d1a8ya1124 Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax 93.48
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 93.31
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 93.23
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 93.22
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 93.18
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 92.86
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 92.65
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 92.26
d1woua_119 Putative 42-9-9 protein (thioredoxin containing pr 91.83
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 91.78
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 91.74
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 91.72
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 91.6
d1nhoa_85 MTH807, thioredoxin/glutaredoxin-like protein {Arc 91.35
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 91.05
d1zzoa1134 Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI 90.93
d2b5ea1140 Protein disulfide isomerase, PDI {Baker's yeast (S 90.67
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 90.42
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 90.24
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 90.16
d2djja1116 Protein disulfide isomerase, PDI {Fungi (Humicola 89.87
d2c0ga2122 Windbeutel, N-terminal domain {Fruit fly (Drosophi 89.75
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 89.63
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 89.61
d1jfua_176 Membrane-anchored thioredoxin-like protein TlpA, s 89.48
d1hyua496 Alkyl hydroperoxide reductase subunit F (AhpF), N- 88.73
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 88.71
d2b5xa1143 thiol:disulfide oxidoreductase YkuV {Bacillus subt 88.52
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 88.34
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 88.32
d2fy6a1143 Peptide methionine sulfoxide reductase MsrA/MsrB, 88.19
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 86.14
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 85.22
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 84.56
d1wf9a194 NPL4-like protein 1 {Thale cress (Arabidopsis thal 83.61
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 80.8
d1o73a_144 Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 80.43
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-21  Score=170.29  Aligned_cols=124  Identities=14%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             HhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHh
Q 012346          161 RDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNS  240 (465)
Q Consensus       161 ~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~  240 (465)
                      +.|......+|.|+|++|++.|+++.||||||+|++.|..|+.|+++||+|++|+++++++||+|.++++++|+..+++.
T Consensus        17 ~~~~pp~~i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~   96 (147)
T d2dlxa1          17 DLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQF   96 (147)
T ss_dssp             CTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHH
T ss_pred             HhhCCCccccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhh
Confidence            34532223449999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhcH
Q 012346          241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNP  288 (465)
Q Consensus       241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~~  288 (465)
                      |++..||+++||+|.+|+.+..+    |.+++++|+..|+.+++.|++
T Consensus        97 y~v~~~Pti~~idp~~ge~v~~~----~~~~~~~fl~~L~~fl~~~~~  140 (147)
T d2dlxa1          97 YKLGDFPYVSILDPRTGQKLVEW----HQLDVSSFLDQVTGFLGEHGQ  140 (147)
T ss_dssp             HTCCSSSEEEEECTTTCCCCEEE----SSCCHHHHHHHHHHHHHHTCS
T ss_pred             eecCceeEEEEEeCCCCeEeccc----CCCCHHHHHHHHHHHHhhCCC
Confidence            99999999999999888765444    678999999999999998753
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Back     information, alignment and structure
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Back     information, alignment and structure
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Back     information, alignment and structure
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Back     information, alignment and structure
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Back     information, alignment and structure