Citrus Sinensis ID: 012378
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FE17 | 473 | NAD-dependent protein dea | yes | no | 0.993 | 0.976 | 0.737 | 0.0 | |
| B8ARK7 | 484 | NAD-dependent protein dea | N/A | no | 0.918 | 0.882 | 0.634 | 1e-157 | |
| P59941 | 334 | NAD-dependent protein dea | yes | no | 0.580 | 0.808 | 0.516 | 4e-77 | |
| Q8N6T7 | 355 | NAD-dependent protein dea | yes | no | 0.580 | 0.760 | 0.512 | 5e-77 | |
| Q9VH08 | 317 | NAD-dependent protein dea | yes | no | 0.580 | 0.851 | 0.471 | 1e-67 | |
| B2RZ55 | 402 | NAD-dependent protein dea | no | no | 0.533 | 0.616 | 0.441 | 1e-51 | |
| Q0P595 | 400 | NAD-dependent protein dea | no | no | 0.533 | 0.62 | 0.425 | 8e-51 | |
| Q8BKJ9 | 402 | NAD-dependent protein dea | no | no | 0.533 | 0.616 | 0.433 | 1e-50 | |
| Q9VAQ1 | 771 | NAD-dependent protein dea | no | no | 0.537 | 0.324 | 0.415 | 1e-49 | |
| Q9NRC8 | 400 | NAD-dependent protein dea | no | no | 0.533 | 0.62 | 0.422 | 2e-49 |
| >sp|Q9FE17|SIR1_ARATH NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/469 (73%), Positives = 407/469 (86%), Gaps = 7/469 (1%)
Query: 1 MSLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCG 60
MSLGYAEKLS+IEDVG VGMAEFFD +LQ KIE+LAKLIQKSKHLVVFTGAGISTSCG
Sbjct: 1 MSLGYAEKLSFIEDVGQVGMAEFFDPSHLLQCKIEELAKLIQKSKHLVVFTGAGISTSCG 60
Query: 61 IPDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLH 120
IPDFRGP GIWTLQREGK LP+ASLPFHRAMP MTHMALVELE+AGILKFVISQNVDGLH
Sbjct: 61 IPDFRGPKGIWTLQREGKDLPKASLPFHRAMPSMTHMALVELERAGILKFVISQNVDGLH 120
Query: 121 LRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTV 180
LRSGIPREKL+ELHG+SFME CPSCG+EY RDFEVETIGLKETSR+CS KCGAKL+DTV
Sbjct: 121 LRSGIPREKLSELHGDSFMEMCPSCGAEYLRDFEVETIGLKETSRKCSVEKCGAKLKDTV 180
Query: 181 LDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 240
LDWEDALPPKE++PAEKHCK AD+VLCLGTSLQITPACNLPLKCL+GGGKIVIVNLQKTP
Sbjct: 181 LDWEDALPPKEIDPAEKHCKKADLVLCLGTSLQITPACNLPLKCLKGGGKIVIVNLQKTP 240
Query: 241 KDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITS 300
KDKKA++VIHG VDKVVAGVM+ LN++IPPY+RIDL QII+TQS+S D++F+NWTLR+ S
Sbjct: 241 KDKKANVVIHGLVDKVVAGVMESLNMKIPPYVRIDLFQIILTQSISGDQRFINWTLRVAS 300
Query: 301 VHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGC 360
VHG T+QLPFIKS+EVSFSD YK+A LDKQPF +KRRT NETFDI K+N+SDGC C
Sbjct: 301 VHGLTSQLPFIKSIEVSFSDNHNYKDAVLDKQPFLMKRRTARNETFDIFFKVNYSDGCDC 360
Query: 361 PCTQINIPFDFKVPPKCFE--LDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVT 418
TQ+++PF+FK+ + +DK+ + Q LRE A ++ CGQ+ V+ER+V+S P+SE
Sbjct: 361 VSTQLSLPFEFKISTEEHVEIIDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPRSEAV 420
Query: 419 VYAIVSNVKTFES--NCLSNGDLKWLKDGVNGTETSKKRSNSRKRKSRS 465
VYA V++++T+ S + L+NGDLKW + G+ TS+KRS + KRKS++
Sbjct: 421 VYATVTSLRTYHSQQSLLANGDLKW---KLEGSGTSRKRSRTGKRKSKA 466
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NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: - |
| >sp|B8ARK7|SIR1_ORYSI NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica GN=SRT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P59941|SIR6_MOUSE NAD-dependent protein deacetylase sirtuin-6 OS=Mus musculus GN=Sirt6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8N6T7|SIR6_HUMAN NAD-dependent protein deacetylase sirtuin-6 OS=Homo sapiens GN=SIRT6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VH08|SIR6_DROME NAD-dependent protein deacetylase Sirt6 OS=Drosophila melanogaster GN=Sirt6 PE=2 SV=1 | Back alignment and function description |
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| >sp|B2RZ55|SIR7_RAT NAD-dependent protein deacetylase sirtuin-7 OS=Rattus norvegicus GN=Sirt7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0P595|SIR7_BOVIN NAD-dependent protein deacetylase sirtuin-7 OS=Bos taurus GN=SIRT7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BKJ9|SIR7_MOUSE NAD-dependent protein deacetylase sirtuin-7 OS=Mus musculus GN=Sirt7 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VAQ1|SIR7_DROME NAD-dependent protein deacetylase Sirt7 OS=Drosophila melanogaster GN=Sirt7 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9NRC8|SIR7_HUMAN NAD-dependent protein deacetylase sirtuin-7 OS=Homo sapiens GN=SIRT7 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| 255563480 | 466 | chromatin regulatory protein sir2, putat | 0.997 | 0.995 | 0.812 | 0.0 | |
| 224056465 | 464 | histone deacetylase [Populus trichocarpa | 0.995 | 0.997 | 0.793 | 0.0 | |
| 297793049 | 473 | hypothetical protein ARALYDRAFT_495661 [ | 0.993 | 0.976 | 0.742 | 0.0 | |
| 356566429 | 479 | PREDICTED: NAD-dependent deacetylase sir | 0.965 | 0.937 | 0.760 | 0.0 | |
| 225461927 | 467 | PREDICTED: NAD-dependent deacetylase sir | 1.0 | 0.995 | 0.764 | 0.0 | |
| 15240574 | 473 | sirtuin 1 [Arabidopsis thaliana] gi|7526 | 0.993 | 0.976 | 0.737 | 0.0 | |
| 297790063 | 473 | hypothetical protein ARALYDRAFT_497237 [ | 0.993 | 0.976 | 0.739 | 0.0 | |
| 359466799 | 467 | sirtuin 1 [Vitis vinifera] | 1.0 | 0.995 | 0.760 | 0.0 | |
| 31711700 | 473 | At5g55760 [Arabidopsis thaliana] gi|1107 | 0.993 | 0.976 | 0.735 | 0.0 | |
| 449462391 | 472 | PREDICTED: NAD-dependent protein deacety | 0.969 | 0.955 | 0.751 | 0.0 |
| >gi|255563480|ref|XP_002522742.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223537980|gb|EEF39593.1| chromatin regulatory protein sir2, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/465 (81%), Positives = 419/465 (90%), Gaps = 1/465 (0%)
Query: 1 MSLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCG 60
MSLGYAEKLS+IEDVGNVGMAEFFDS +LQEKIE+LAK+IQKSKHLVVFTGAGISTSCG
Sbjct: 1 MSLGYAEKLSFIEDVGNVGMAEFFDSSYVLQEKIERLAKMIQKSKHLVVFTGAGISTSCG 60
Query: 61 IPDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLH 120
IPDFRGP GIWTLQREGKPLPEASLPFHRAMP +THMALVELE+AGI+KF+ISQNVDGLH
Sbjct: 61 IPDFRGPKGIWTLQREGKPLPEASLPFHRAMPSITHMALVELERAGIVKFIISQNVDGLH 120
Query: 121 LRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTV 180
LRSGIPREKLAELHGNSFME+CPSCG+EYFRDFEVETIGLKETSRRCSD+KCGAKLRDTV
Sbjct: 121 LRSGIPREKLAELHGNSFMESCPSCGAEYFRDFEVETIGLKETSRRCSDVKCGAKLRDTV 180
Query: 181 LDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 240
LDWEDALPPKEM PAEKHC++ D+VLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP
Sbjct: 181 LDWEDALPPKEMLPAEKHCRMGDLVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 240
Query: 241 KDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITS 300
KDKKASLVIHGFVDKV+AGVM LL+++IPPY+RIDLLQIIVT+SLS+DK+FVNWTLRI S
Sbjct: 241 KDKKASLVIHGFVDKVIAGVMHLLSMQIPPYVRIDLLQIIVTRSLSADKRFVNWTLRIAS 300
Query: 301 VHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGC 360
VH A LPFIKS+EV+FSD QKYK A L +QPF LKRRTV E+F+I LKLN SDGCGC
Sbjct: 301 VHALKATLPFIKSIEVTFSDTQKYKAAILHEQPFNLKRRTVTTESFEIFLKLNLSDGCGC 360
Query: 361 PCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVY 420
CTQINIPF FKV CF L KD + Q LRE A Q LGCGQN +IERK + +P+SEVTV+
Sbjct: 361 LCTQINIPFGFKVLNDCFNLKKDSVIQNLREKAIQVLGCGQNAMIERKTIIAPRSEVTVH 420
Query: 421 AIVSNVKTFESNCLSNGDLKWLK-DGVNGTETSKKRSNSRKRKSR 464
AIV+N+K FES+ LSNG++K L+ +NG T +KRSNSRKRKSR
Sbjct: 421 AIVTNIKAFESDGLSNGEVKRLRGSSINGIMTCRKRSNSRKRKSR 465
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056465|ref|XP_002298870.1| histone deacetylase [Populus trichocarpa] gi|222846128|gb|EEE83675.1| histone deacetylase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297793049|ref|XP_002864409.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata] gi|297310244|gb|EFH40668.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356566429|ref|XP_003551434.1| PREDICTED: NAD-dependent deacetylase sirtuin-6-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225461927|ref|XP_002265837.1| PREDICTED: NAD-dependent deacetylase sirtuin-6 [Vitis vinifera] gi|296089923|emb|CBI39742.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15240574|ref|NP_200387.1| sirtuin 1 [Arabidopsis thaliana] gi|75262309|sp|Q9FE17.1|SIR1_ARATH RecName: Full=NAD-dependent protein deacetylase SRT1; AltName: Full=Regulatory protein SIR2 homolog 1; AltName: Full=SIR2-like protein 1 gi|12006420|gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] gi|9758610|dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gi|332009294|gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297790063|ref|XP_002862943.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata] gi|297308724|gb|EFH39202.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|359466799|gb|AEV46830.1| sirtuin 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|31711700|gb|AAP68206.1| At5g55760 [Arabidopsis thaliana] gi|110743087|dbj|BAE99436.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449462391|ref|XP_004148924.1| PREDICTED: NAD-dependent protein deacetylase SRT1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| TAIR|locus:2162112 | 473 | SRT1 "AT5G55760" [Arabidopsis | 0.963 | 0.947 | 0.750 | 8.2e-186 | |
| UNIPROTKB|F1P0C4 | 357 | SIRT6 "Uncharacterized protein | 0.651 | 0.848 | 0.484 | 2.8e-73 | |
| RGD|1305216 | 330 | Sirt6 "sirtuin 6" [Rattus norv | 0.580 | 0.818 | 0.519 | 3.2e-72 | |
| MGI|MGI:1354161 | 334 | Sirt6 "sirtuin 6 (silent matin | 0.580 | 0.808 | 0.516 | 1.1e-71 | |
| UNIPROTKB|Q8N6T7 | 355 | SIRT6 "NAD-dependent protein d | 0.580 | 0.760 | 0.512 | 4.8e-71 | |
| UNIPROTKB|E2QXD9 | 361 | SIRT6 "Uncharacterized protein | 0.580 | 0.747 | 0.509 | 7.7e-71 | |
| ZFIN|ZDB-GENE-031007-2 | 354 | sirt6 "sirtuin (silent mating | 0.580 | 0.762 | 0.509 | 9.9e-71 | |
| UNIPROTKB|A5D7K6 | 359 | SIRT6 "SIRT6 protein" [Bos tau | 0.580 | 0.752 | 0.512 | 3.3e-70 | |
| UNIPROTKB|F1S7P1 | 359 | SIRT6 "Uncharacterized protein | 0.580 | 0.752 | 0.487 | 3.6e-66 | |
| UNIPROTKB|F1S7M5 | 328 | SIRT6 "Uncharacterized protein | 0.630 | 0.893 | 0.455 | 5.8e-66 |
| TAIR|locus:2162112 SRT1 "AT5G55760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1802 (639.4 bits), Expect = 8.2e-186, P = 8.2e-186
Identities = 340/453 (75%), Positives = 397/453 (87%)
Query: 1 MSLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCG 60
MSLGYAEKLS+IEDVG VGMAEFFD +LQ KIE+LAKLIQKSKHLVVFTGAGISTSCG
Sbjct: 1 MSLGYAEKLSFIEDVGQVGMAEFFDPSHLLQCKIEELAKLIQKSKHLVVFTGAGISTSCG 60
Query: 61 IPDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLH 120
IPDFRGP GIWTLQREGK LP+ASLPFHRAMP MTHMALVELE+AGILKFVISQNVDGLH
Sbjct: 61 IPDFRGPKGIWTLQREGKDLPKASLPFHRAMPSMTHMALVELERAGILKFVISQNVDGLH 120
Query: 121 LRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTV 180
LRSGIPREKL+ELHG+SFME CPSCG+EY RDFEVETIGLKETSR+CS KCGAKL+DTV
Sbjct: 121 LRSGIPREKLSELHGDSFMEMCPSCGAEYLRDFEVETIGLKETSRKCSVEKCGAKLKDTV 180
Query: 181 LDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 240
LDWEDALPPKE++PAEKHCK AD+VLCLGTSLQITPACNLPLKCL+GGGKIVIVNLQKTP
Sbjct: 181 LDWEDALPPKEIDPAEKHCKKADLVLCLGTSLQITPACNLPLKCLKGGGKIVIVNLQKTP 240
Query: 241 KDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITS 300
KDKKA++VIHG VDKVVAGVM+ LN++IPPY+RIDL QII+TQS+S D++F+NWTLR+ S
Sbjct: 241 KDKKANVVIHGLVDKVVAGVMESLNMKIPPYVRIDLFQIILTQSISGDQRFINWTLRVAS 300
Query: 301 VHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGC 360
VHG T+QLPFIKS+EVSFSD YK+A LDKQPF +KRRT NETFDI K+N+SDGC C
Sbjct: 301 VHGLTSQLPFIKSIEVSFSDNHNYKDAVLDKQPFLMKRRTARNETFDIFFKVNYSDGCDC 360
Query: 361 PCTQINIPFDFKVPPK-CFEL-DKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVT 418
TQ+++PF+FK+ + E+ DK+ + Q LRE A ++ CGQ+ V+ER+V+S P+SE
Sbjct: 361 VSTQLSLPFEFKISTEEHVEIIDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPRSEAV 420
Query: 419 VYAIVSNVKTFES--NCLSNGDLKWLKDGVNGT 449
VYA V++++T+ S + L+NGDLKW +G +GT
Sbjct: 421 VYATVTSLRTYHSQQSLLANGDLKWKLEG-SGT 452
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| UNIPROTKB|F1P0C4 SIRT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|1305216 Sirt6 "sirtuin 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1354161 Sirt6 "sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8N6T7 SIRT6 "NAD-dependent protein deacetylase sirtuin-6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QXD9 SIRT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-031007-2 sirt6 "sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5D7K6 SIRT6 "SIRT6 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S7P1 SIRT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S7M5 SIRT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8ARK7 | SIR1_ORYSI | 3, ., 5, ., 1, ., - | 0.6342 | 0.9182 | 0.8822 | N/A | no |
| Q9FE17 | SIR1_ARATH | 3, ., 5, ., 1, ., - | 0.7377 | 0.9935 | 0.9767 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | SRT902 | histone deacetylase (464 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 465 | |||
| cd01410 | 206 | cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic | 1e-127 | |
| cd01407 | 218 | cd01407, SIR2-fam, SIR2 family of proteins include | 2e-85 | |
| cd00296 | 222 | cd00296, SIR2, SIR2 superfamily of proteins includ | 1e-72 | |
| PRK00481 | 242 | PRK00481, PRK00481, NAD-dependent deacetylase; Pro | 2e-59 | |
| COG0846 | 250 | COG0846, SIR2, NAD-dependent protein deacetylases, | 2e-55 | |
| cd01413 | 222 | cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo | 1e-54 | |
| PRK14138 | 244 | PRK14138, PRK14138, NAD-dependent deacetylase; Pro | 3e-43 | |
| cd01412 | 224 | cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti | 2e-40 | |
| pfam02146 | 177 | pfam02146, SIR2, Sir2 family | 5e-38 | |
| cd01411 | 225 | cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic | 5e-38 | |
| cd01409 | 260 | cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic | 5e-35 | |
| PTZ00409 | 271 | PTZ00409, PTZ00409, Sir2 (Silent Information Regul | 9e-35 | |
| cd01408 | 235 | cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w | 6e-30 | |
| PTZ00408 | 242 | PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro | 6e-21 | |
| PRK05333 | 285 | PRK05333, PRK05333, NAD-dependent deacetylase; Pro | 2e-18 | |
| PTZ00410 | 349 | PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona | 1e-17 | |
| cd01406 | 242 | cd01406, SIR2-like, Sir2-like: Prokaryotic group o | 0.003 |
| >gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
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Score = 367 bits (945), Expect = e-127
Identities = 140/207 (67%), Positives = 157/207 (75%), Gaps = 2/207 (0%)
Query: 45 KHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEK 104
KHLVVFTGAGISTS GIPDFRGPNG+WTL E K S F RA P +THMALVELE+
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELER 60
Query: 105 AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETS 164
AG+LKFVISQNVDGLHLRSG+PREKL+ELHGN F+E C SCG EY RD VET G KET
Sbjct: 61 AGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETG 120
Query: 165 RRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKC 224
RRC CG L+DT++D+ + LPP+ A AD+ LCLGTSLQ+TPA NLPLK
Sbjct: 121 RRCH--ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKA 178
Query: 225 LRGGGKIVIVNLQKTPKDKKASLVIHG 251
R GG++VIVNLQ TPKDK A LVIHG
Sbjct: 179 ARAGGRLVIVNLQPTPKDKLADLVIHG 205
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 206 |
| >gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >gnl|CDD|216902 pfam02146, SIR2, Sir2 family | Back alignment and domain information |
|---|
| >gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| KOG1905 | 353 | consensus Class IV sirtuins (SIR2 family) [Chromat | 100.0 | |
| cd01410 | 206 | SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla | 100.0 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01409 | 260 | SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla | 100.0 | |
| PTZ00409 | 271 | Sir2 (Silent Information Regulator) protein; Provi | 100.0 | |
| COG0846 | 250 | SIR2 NAD-dependent protein deacetylases, SIR2 fami | 100.0 | |
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 100.0 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01413 | 222 | SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group | 100.0 | |
| PTZ00408 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| PTZ00410 | 349 | NAD-dependent SIR2; Provisional | 100.0 | |
| cd01411 | 225 | SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo | 100.0 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 100.0 | |
| cd01407 | 218 | SIR2-fam SIR2 family of proteins includes silent i | 100.0 | |
| cd00296 | 222 | SIR2 SIR2 superfamily of proteins includes silent | 100.0 | |
| KOG2683 | 305 | consensus Sirtuin 4 and related class II sirtuins | 100.0 | |
| KOG2684 | 412 | consensus Sirtuin 5 and related class III sirtuins | 100.0 | |
| KOG2682 | 314 | consensus NAD-dependent histone deacetylases and c | 100.0 | |
| PF02146 | 178 | SIR2: Sir2 family; InterPro: IPR003000 These seque | 100.0 | |
| cd01406 | 242 | SIR2-like Sir2-like: Prokaryotic group of uncharac | 98.6 | |
| PF03366 | 84 | YEATS: YEATS family; InterPro: IPR005033 Named the | 97.39 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 96.17 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 93.51 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 93.38 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.15 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.15 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 92.93 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 92.8 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 92.75 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 92.65 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 92.64 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 92.63 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.32 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 92.31 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 92.23 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 92.09 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 92.09 | |
| PLN02470 | 585 | acetolactate synthase | 91.98 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 91.92 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 91.89 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 91.79 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 91.63 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 91.59 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 91.58 | |
| PF13289 | 143 | SIR2_2: SIR2-like domain | 91.5 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 91.48 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 91.43 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 91.37 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 91.25 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 91.04 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 91.03 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 91.02 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 90.99 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 90.93 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 90.92 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 90.76 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 90.57 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 90.49 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 90.43 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 90.35 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 90.0 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 89.51 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 89.5 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 89.05 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 88.75 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 87.94 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 87.91 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 87.26 | |
| PLN02573 | 578 | pyruvate decarboxylase | 84.24 | |
| KOG3149 | 249 | consensus Transcription initiation factor IIF, aux | 84.18 | |
| PLN00022 | 356 | electron transfer flavoprotein subunit alpha; Prov | 83.69 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 83.55 | |
| PRK03363 | 313 | fixB putative electron transfer flavoprotein FixB; | 82.88 | |
| PRK11916 | 312 | electron transfer flavoprotein subunit YdiR; Provi | 82.73 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 82.12 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 81.1 |
| >KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-74 Score=563.42 Aligned_cols=330 Identities=54% Similarity=0.849 Sum_probs=302.6
Q ss_pred CCccccccCCCccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCCC
Q 012378 1 MSLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPL 80 (465)
Q Consensus 1 ms~~ya~~l~~~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~ 80 (465)
||++||+++|.+.++|++|++|.||+++++..++++||++|++||++||+|||||||+|||||||||+|+|++++.|+.
T Consensus 12 ~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~- 90 (353)
T KOG1905|consen 12 MSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD- 90 (353)
T ss_pred hhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhcc
Q 012378 81 PEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGL 160 (465)
Q Consensus 81 p~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~ 160 (465)
.....|..|.|+.+||+|.+|++.|.+++||||||||||.|+|+|+++++|||||++.++|.+|..+|.++..++++++
T Consensus 91 -~~~~df~~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl 169 (353)
T KOG1905|consen 91 -KFGVDFSEARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGL 169 (353)
T ss_pred -ccCCchhhcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccc
Confidence 5566799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCCCCC------CCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE
Q 012378 161 KETSRRCSDLK------CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 234 (465)
Q Consensus 161 ~~~~P~C~~p~------CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI 234 (465)
..+.+.|.... |-|.|++.++.|+..+|...|+.|.+++++||++|++||||+|.|..++|+.+.+.|+++++|
T Consensus 170 ~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~iv 249 (353)
T KOG1905|consen 170 KATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIV 249 (353)
T ss_pred ccccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEE
Confidence 87766665333 446789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCcccc-CceeEEEeeeccCCccceeeEEEEeeecCCCCCcccceE
Q 012378 235 NLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI-DLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKS 313 (465)
Q Consensus 235 Nl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 313 (465)
|+|+|+.|..+++.|||++|+||..||+.||++||+|.+. |.+.+.++....+....+.|.+..+++.+-..+.+|++.
T Consensus 250 NlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (353)
T KOG1905|consen 250 NLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLSRPGEEHTIPQPLLKNSVEETTKQEPFIST 329 (353)
T ss_pred eCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccCCCCccccccccccccccccCCCCCccccc
Confidence 9999999999999999999999999999999999999985 666666666666678889999999999998888999998
Q ss_pred eEeecccccccccccccCCCeEEEEeccc
Q 012378 314 VEVSFSDRQKYKEASLDKQPFQLKRRTVI 342 (465)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 342 (465)
++ + .++++++|.-.++...
T Consensus 330 ~~-s---------pi~~~~~~~~~~k~~r 348 (353)
T KOG1905|consen 330 IS-S---------PILKGPRIRTPIKNGR 348 (353)
T ss_pred cc-c---------ccccCCCCcCCccCcc
Confidence 88 1 4566666665544443
|
|
| >cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
|---|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PTZ00408 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >PTZ00410 NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
| >cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases | Back alignment and domain information |
|---|
| >cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein | Back alignment and domain information |
|---|
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PF13289 SIR2_2: SIR2-like domain | Back alignment and domain information |
|---|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
| >KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription] | Back alignment and domain information |
|---|
| >PLN00022 electron transfer flavoprotein subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional | Back alignment and domain information |
|---|
| >PRK11916 electron transfer flavoprotein subunit YdiR; Provisional | Back alignment and domain information |
|---|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 465 | ||||
| 3pki_A | 355 | Human Sirt6 Crystal Structure In Complex With Adp R | 1e-77 | ||
| 3k35_A | 318 | Crystal Structure Of Human Sirt6 Length = 318 | 2e-77 | ||
| 1yc5_A | 246 | Sir2-P53 Peptide-Nicotinamide Length = 246 | 3e-31 | ||
| 1m2n_A | 249 | Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety | 7e-31 | ||
| 2h4h_A | 246 | Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | 1e-30 | ||
| 1m2g_A | 249 | Sir2 Homologue-Adp Ribose Complex Length = 249 | 2e-30 | ||
| 2h59_A | 246 | Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp | 4e-30 | ||
| 1m2h_A | 249 | Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt | 5e-30 | ||
| 1m2k_A | 249 | Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng | 7e-30 | ||
| 1ici_A | 256 | Crystal Structure Of A Sir2 Homolog-Nad Complex Len | 1e-29 | ||
| 1m2j_A | 249 | Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt | 2e-29 | ||
| 1ma3_A | 253 | Structure Of A Sir2 Enzyme Bound To An Acetylated P | 3e-28 | ||
| 3jwp_A | 265 | Crystal Structure Of Plasmodium Falciparum Sir2a (P | 7e-21 | ||
| 3u31_A | 290 | Plasmodium Falciparum Sir2a Preferentially Hydrolyz | 1e-20 | ||
| 2b4y_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 Length | 1e-17 | ||
| 3rig_A | 273 | Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla | 2e-17 | ||
| 4hda_A | 275 | Crystal Structure Of Human Sirt5 In Complex With Fl | 2e-17 | ||
| 4g1c_A | 267 | Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length | 2e-17 | ||
| 2nyr_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 In Com | 2e-17 | ||
| 3glr_A | 285 | Crystal Structure Of Human Sirt3 With Acetyl-Lysine | 1e-16 | ||
| 4fvt_A | 274 | Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L | 1e-16 | ||
| 4hd8_A | 284 | Crystal Structure Of Human Sirt3 In Complex With Fl | 2e-16 | ||
| 1j8f_A | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 2e-16 | ||
| 1j8f_C | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 2e-16 | ||
| 2od7_A | 308 | Crystal Structure Of Yhst2 Bound To The Intermediat | 3e-13 | ||
| 1q17_A | 300 | Structure Of The Yeast Hst2 Protein Deacetylase In | 3e-13 | ||
| 1szc_A | 297 | Structural Basis For Nicotinamide Cleavage And Adp- | 5e-13 | ||
| 1q14_A | 361 | Structure And Autoregulation Of The Yeast Hst2 Homo | 5e-13 | ||
| 1q1a_A | 289 | Structure Of The Yeast Hst2 Protein Deacetylase In | 6e-13 | ||
| 2od2_A | 308 | Crystal Structure Of Yhst2 I117f Mutant Bound To Ca | 7e-13 | ||
| 4i5i_A | 287 | Crystal Structure Of The Sirt1 Catalytic Domain Bou | 3e-11 | ||
| 1s5p_A | 235 | Structure And Substrate Binding Properties Of Cobb, | 3e-11 | ||
| 4iao_A | 492 | Crystal Structure Of Sir2 C543s Mutant In Complex W | 1e-10 | ||
| 2hjh_A | 354 | Crystal Structure Of The Sir2 Deacetylase Length = | 2e-10 |
| >pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 | Back alignment and structure |
|
| >pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 | Back alignment and structure |
| >pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 | Back alignment and structure |
| >pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | Back alignment and structure |
| >pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 | Back alignment and structure |
| >pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 | Back alignment and structure |
| >pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 | Back alignment and structure |
| >pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 | Back alignment and structure |
| >pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 | Back alignment and structure |
| >pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 | Back alignment and structure |
| >pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 | Back alignment and structure |
| >pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 | Back alignment and structure |
| >pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 | Back alignment and structure |
| >pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 | Back alignment and structure |
| >pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 | Back alignment and structure |
| >pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 | Back alignment and structure |
| >pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 | Back alignment and structure |
| >pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 | Back alignment and structure |
| >pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 | Back alignment and structure |
| >pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 | Back alignment and structure |
| >pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 | Back alignment and structure |
| >pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 | Back alignment and structure |
| >pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 | Back alignment and structure |
| >pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 | Back alignment and structure |
| >pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 | Back alignment and structure |
| >pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 | Back alignment and structure |
| >pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 382 bits (982), Expect = e-131
Identities = 141/283 (49%), Positives = 192/283 (67%), Gaps = 7/283 (2%)
Query: 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGI 61
S+ YA LS D G G+ E FD P+ L+ K+ +LA+L+ +S +V TGAGIST+ GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHL 121
PDFRGP+G+WT++ G P+ F A P THMALV+LE+ G+L+F++SQNVDGLH+
Sbjct: 62 PDFRGPHGVWTMEERGL-APKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHV 120
Query: 122 RSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL------KCGAK 175
RSG PR+KLAELHGN F+E C C ++Y RD V T+GLK T R C+ C +
Sbjct: 121 RSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGE 180
Query: 176 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235
LRDT+LDWED+LP +++ A++ + AD+ + LGTSLQI P+ NLPL R GG++VIVN
Sbjct: 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240
Query: 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQ 278
LQ T D+ A L IHG+VD+V+ +M L L IP + +L+
Sbjct: 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLE 283
|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 | Back alignment and structure |
|---|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 | Back alignment and structure |
|---|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 | Back alignment and structure |
|---|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 100.0 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 100.0 | |
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 100.0 | |
| 3u31_A | 290 | SIR2A, transcriptional regulatory protein SIR2 hom | 100.0 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 100.0 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 100.0 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 100.0 | |
| 1q14_A | 361 | HST2 protein; histone deacetylase, hydrolase; 2.50 | 100.0 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 100.0 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 100.0 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 100.0 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 100.0 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 100.0 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 100.0 | |
| 3qrl_A | 140 | Transcription initiation factor TFIID subunit 14; | 96.31 | |
| 3rls_A | 175 | YAF9, protein AF-9 homolog; yeats domain, histone, | 96.12 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 92.65 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 91.58 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 91.01 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 90.57 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 90.37 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 90.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 89.57 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 89.54 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 89.14 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 88.83 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 88.54 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 86.91 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 86.47 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 85.81 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 85.56 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 85.25 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 84.6 |
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-77 Score=601.31 Aligned_cols=272 Identities=51% Similarity=0.893 Sum_probs=236.3
Q ss_pred CccccccCCCccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCCCc
Q 012378 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPLP 81 (465)
Q Consensus 2 s~~ya~~l~~~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~p 81 (465)
|+|||++||+|+|||+||.||+||+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+..+.+. .|
T Consensus 2 s~~ya~~l~~~~~~g~~~~~e~~d~p~~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~-~p 80 (318)
T 3k35_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL-AP 80 (318)
T ss_dssp -------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTC-CC
T ss_pred ccchhhhCCcccccCccCCccccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccC-CH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999765443 46
Q ss_pred ccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccc
Q 012378 82 EASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLK 161 (465)
Q Consensus 82 ~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~ 161 (465)
+..+.|..++||.+|++|++|++.|++++||||||||||++||++.++|+|||||++..+|..|++.|.++.........
T Consensus 81 ~~~~~f~~a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (318)
T 3k35_A 81 KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLK 160 (318)
T ss_dssp CCSSCTTTCCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSC
T ss_pred HHHHHhhhCCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccC
Confidence 66678899999999999999999999999999999999999999888999999999999999999998776543322223
Q ss_pred cCCCCCCC------CCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 162 ETSRRCSD------LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 162 ~~~P~C~~------p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
+++|.|+. +.|||.|||+||||||++|.+.++.|.+++++|||+|||||||+|+|+++||..+.+.|+++|+||
T Consensus 161 p~~~~C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN 240 (318)
T 3k35_A 161 ATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (318)
T ss_dssp EEEEECCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEEC
T ss_pred CCCCcCcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 33456731 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCcccc
Q 012378 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 274 (465)
Q Consensus 236 l~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~~ 274 (465)
+++|+.|..+|++|+++++++|+.|++.||++||+|..-
T Consensus 241 ~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~~~ 279 (318)
T 3k35_A 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGP 279 (318)
T ss_dssp SSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCCSC
T ss_pred CCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999654
|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* | Back alignment and structure |
|---|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A | Back alignment and structure |
|---|
| >3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A | Back alignment and structure |
|---|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 465 | ||||
| d1ma3a_ | 252 | c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc | 4e-57 | |
| d1yc5a1 | 245 | c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA | 9e-57 | |
| d1m2ka_ | 249 | c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar | 4e-56 | |
| d2b4ya1 | 267 | c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt | 6e-56 | |
| d1q1aa_ | 289 | c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c | 6e-49 | |
| d1j8fa_ | 323 | c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho | 1e-47 | |
| d1s5pa_ | 235 | c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch | 2e-45 | |
| d1s2wa_ | 275 | c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mus | 0.002 | |
| d1ytla1 | 158 | c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synth | 0.003 |
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF0112, Sir2 homolog (Sir2-AF2) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 187 bits (475), Expect = 4e-57
Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 20/254 (7%)
Query: 30 LQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPL--------- 80
++++I + A+++ KSKH VVFTGAGIS GIP FRG +G+W +
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP 60
Query: 81 ------PEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH 134
A P H A+ ELE+ GI+K VI+QN+D LH R+G R + ELH
Sbjct: 61 RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELH 118
Query: 135 GNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNP 194
G+ C C Y VE E R ++ V+ + + LP + +
Sbjct: 119 GSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKC--GSYYVKPRVVLFGEPLPQRTLFE 176
Query: 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVD 254
A + K D + +G+SL + PA LP + G K++IVN + T D + I G
Sbjct: 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAG 236
Query: 255 KVVAGVMD-LLNLR 267
+V+ +++ + LR
Sbjct: 237 EVLPKIVEEVKRLR 250
|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 | Back information, alignment and structure |
|---|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 | Back information, alignment and structure |
|---|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 | Back information, alignment and structure |
|---|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 275 | Back information, alignment and structure |
|---|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 158 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 100.0 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 100.0 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 100.0 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 100.0 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 100.0 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 100.0 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 97.23 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 96.79 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 96.63 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.62 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.47 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.45 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.42 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.36 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 95.33 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 93.15 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 92.83 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 91.71 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 88.57 | |
| d1pnoa_ | 180 | Transhydrogenase domain III (dIII) {Rhodospirillum | 81.33 | |
| d1ytla1 | 158 | Acetyl-CoA decarbonylase/synthase complex epsilon | 80.46 |
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-63 Score=482.38 Aligned_cols=229 Identities=36% Similarity=0.581 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCC-------Ccccccc--------cccCCCCHHHH
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKP-------LPEASLP--------FHRAMPGMTHM 97 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~-------~p~~~~~--------f~~a~Pn~~H~ 97 (465)
|+++|+++|++|++|||+|||||||+||||||||++|+|+.+..... .|+..|. +..++||++|+
T Consensus 2 k~~~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~G~w~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~P~~~H~ 81 (245)
T d1yc5a1 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHV 81 (245)
T ss_dssp CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHH
T ss_pred cHHHHHHHHHhCCCEEEEECchhccccCCCCccCcCCCccCCCcccccHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 57899999999999999999999999999999999999986643222 2333332 36899999999
Q ss_pred HHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 98 ALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 98 aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
+|++|+++|++.+||||||||||++||+ ++|+|+|||++..+|..|++.|..+.....+. ....|.| |.|||.||
T Consensus 82 ~L~~l~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~~-~~~~p~c--~~Cgg~lr 156 (245)
T d1yc5a1 82 LLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLC--DDCNSLIR 156 (245)
T ss_dssp HHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBC--TTTCCBEE
T ss_pred HHHHHHhcCCCceEeecccchHHHHcCC--ccccccccccceeeecccCCCccHHHHhhhhh-cccCCCc--cccCCccc
Confidence 9999999999999999999999999998 58999999999999999999998776555443 3456888 79999999
Q ss_pred CcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHH
Q 012378 178 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 257 (465)
Q Consensus 178 P~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL 257 (465)
|+||||||.+|++.+..|.+++++||++|||||||+|+|+++||..+.++|+++|+||+++|+.|..+|++|+|+++++|
T Consensus 157 P~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~g~~~e~l 236 (245)
T d1yc5a1 157 PNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFA 236 (245)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHH
T ss_pred CcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCcceeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 012378 258 AGVMDLLNL 266 (465)
Q Consensus 258 ~~L~~~L~l 266 (465)
+.|++.||+
T Consensus 237 ~~l~~~lgi 245 (245)
T d1yc5a1 237 RRVMEEGGI 245 (245)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999999985
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
| >d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|