Citrus Sinensis ID: 012380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
cEEEEcccccEEEEEEcccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEcccEEEEEEEEHHHHcccccccEEEEEEEcccccccHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccHHHHHHHHcccccccccEEEEEEccEEEEcccHHHHcccccccEEEEEEccccccccccccccccccccccHHHcccccccccccccccEEEEHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHcccccc
cEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHcccccccccccccccccEEEEEEcccEHEEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccccHHcEcccccEEEEEEEcccccccccccHHHHEcccccHHHHHcccccHHHHHccccEEcHHHHHHHcHHHHHHHHHHHcccccEHccccccccEEEEcccccc
mkfyisttgikrvtisntgtgkrssapaaalagrripssrtlLPVVLVLGIVLPFLFVRVAFLVLESSAVCssslgcigrrifsgsdtSLKLREELTRALIEAkdgsgngggriqGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLashgvpkslHCLCLKLAEEYAVNAMarsrlpspeyvshltdpsfhhVVLLTDNVLAASVVVSStvqnsarpeKLVFHIVtdkktytpmhsWFAINSFRSAVVEVKglhqydwsqEVNVGVKEMLEAHRLIWSHYYknlkhedfeyegenrrclevlspsCLSLMNHLRiyipelfpdlnkilfldddvVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpgrkykdylnfsypiissnfdhdhcawlygmnvldleAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
mkfyisttgikrvtisntgtgkrssapaaalagrripssrtLLPVVLVLGIVLPFLFVRVAFLVLESSAVcssslgcigrrifsgsdtslKLREELTRALIeakdgsgngggriQGTLDSFNELVKEVtskrqdikAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSstvqnsarpeklVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVgsscgdnccpGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTllpvvlvlgivlpflfvRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNvlaasvvvsstvqnsaRPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
***YISTTGIKRV*************************SRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLR*ELTRALI****************LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM**********ESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWL*
*KFYISTTGIKRV***********************PSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFS************************************FNELVKEVTSKRQDIKAFAFKTKAMLL*************SIYWHLASHGVPKSLHCLCLKLAEEY********************DPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
MKFYISTTGIKRVTISNT***************RRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKM*********RESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKH**********RCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGT***
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
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MKFYISTTGIKRVTISNTGTGKRSSAPAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTWLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
Q8L4B0540 Probable galacturonosyltr yes no 0.944 0.812 0.686 1e-171
Q8GWT1532 Probable galacturonosyltr no no 0.926 0.810 0.441 6e-95
Q0WV13533 Probable galacturonosyltr no no 0.926 0.808 0.436 8e-93
Q9FH36535 Probable galacturonosyltr no no 0.810 0.704 0.428 5e-86
Q9LE59673 Polygalacturonate 4-alpha no no 0.707 0.488 0.363 8e-61
Q93ZX7616 Probable galacturonosyltr no no 0.737 0.556 0.373 2e-60
Q0WQD2680 Probable galacturonosyltr no no 0.638 0.436 0.417 3e-60
Q949Q1537 Probable galacturonosyltr no no 0.643 0.556 0.391 1e-58
Q9LSG3559 Galacturonosyltransferase no no 0.647 0.538 0.367 6e-56
Q9SKT6536 Probable galacturonosyltr no no 0.718 0.623 0.385 2e-53
>sp|Q8L4B0|GAUTF_ARATH Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1 Back     alignment and function desciption
 Score =  600 bits (1548), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/447 (68%), Positives = 359/447 (80%), Gaps = 8/447 (1%)

Query: 1   MKFYISTTGIKRVTISNTGTGKRSSAPA-----AALAGRRIPSSRTLLPVVLVLGIVLPF 55
           MKFYIS TGIK+VTISN G G    +       AALA RR  SSRTLL ++L+L IVLPF
Sbjct: 1   MKFYISATGIKKVTISNPGVGIGKGSGGCAAAAAALAARRF-SSRTLLLLLLLLAIVLPF 59

Query: 56  LFVRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGR-I 114
           +FVR AFLVLES++VC S L C+G R+F G DTSLK+ EELTRAL+E      +  GR  
Sbjct: 60  IFVRFAFLVLESASVCDSPLDCMGLRLFRGGDTSLKIGEELTRALVEETTDHQDVNGRGT 119

Query: 115 QGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKS 174
           +G+L+SF++LVKE+T KR+DI+AFA  TK MLL+ME +VQS++  E +YWHLASHG+PKS
Sbjct: 120 KGSLESFDDLVKEMTLKRRDIRAFASVTKKMLLQMERKVQSAKHHELVYWHLASHGIPKS 179

Query: 175 LHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNS 234
           LHCL L+L EEY+VNAMAR RLP PE VS LTDPSFHH+VLLTDNVLAASVV+SSTVQN+
Sbjct: 180 LHCLSLRLTEEYSVNAMARMRLPPPESVSRLTDPSFHHIVLLTDNVLAASVVISSTVQNA 239

Query: 235 ARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHR 294
             PEK VFHIVTDKKTYTPMH+WFAINS  S VVEVKGLHQYDW QEVN  V+EML+ HR
Sbjct: 240 VNPEKFVFHIVTDKKTYTPMHAWFAINSASSPVVEVKGLHQYDWPQEVNFKVREMLDIHR 299

Query: 295 LIWSHYYKNLKHEDFEY-EGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDD 353
           LIW  +Y+NLK  DF + EG + + L+ L+PSCL+L+NHLRIYIP+LFPDLNKI+ LDDD
Sbjct: 300 LIWRRHYQNLKDSDFSFVEGTHEQSLQALNPSCLALLNHLRIYIPKLFPDLNKIVLLDDD 359

Query: 354 VVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAW 413
           VVVQ DLSSL E DLNGKVVGAVV S CGDNCCPGRKYKDY NFS+P+ISSN   + CAW
Sbjct: 360 VVVQSDLSSLWETDLNGKVVGAVVDSWCGDNCCPGRKYKDYFNFSHPLISSNLVQEDCAW 419

Query: 414 LYGMNVLDLEAWRRTNITATYHKWLKL 440
           L GMNV DL+AWR+TNIT  Y  WL+L
Sbjct: 420 LSGMNVFDLKAWRQTNITEAYSTWLRL 446
May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8GWT1|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1 Back     alignment and function description
>sp|Q0WV13|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH36|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
255558712535 Glycosyltransferase QUASIMODO1, putative 0.939 0.816 0.757 0.0
225446879528 PREDICTED: probable galacturonosyltransf 0.931 0.820 0.761 0.0
147794434528 hypothetical protein VITISV_043869 [Viti 0.931 0.820 0.761 0.0
224131384531 glycosyltransferase [Populus trichocarpa 0.931 0.815 0.759 0.0
356526995525 PREDICTED: probable galacturonosyltransf 0.920 0.815 0.725 0.0
356567408525 PREDICTED: probable galacturonosyltransf 0.920 0.815 0.716 0.0
22331857540 alpha-1,4-galacturonosyltransferase [Ara 0.944 0.812 0.686 1e-169
297820714538 GAUT15 [Arabidopsis lyrata subsp. lyrata 0.941 0.814 0.681 1e-166
7630074537 putative protein [Arabidopsis thaliana] 0.937 0.811 0.682 1e-166
356499376522 PREDICTED: probable galacturonosyltransf 0.907 0.808 0.671 1e-163
>gi|255558712|ref|XP_002520380.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223540427|gb|EEF41996.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/442 (75%), Positives = 381/442 (86%), Gaps = 5/442 (1%)

Query: 1   MKFYISTTGIKRVTISNTGTGKRSSAPAAAL---AGRRIPSSRTLLPVVLVLGIVLPFLF 57
           MKFYISTTGIKRVTISN G G       +++   AGRRI S RTLLPV+LVL IVLPFLF
Sbjct: 1   MKFYISTTGIKRVTISNPGCGGGGGGKGSSIKVAAGRRI-SGRTLLPVLLVLAIVLPFLF 59

Query: 58  VRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGT 117
           VR+AFLVLES++ C+SS+ C   R F GSDTS+KLREELTRAL+EAK+ SG    ++  +
Sbjct: 60  VRIAFLVLESASACNSSVDCRPWRFFGGSDTSMKLREELTRALLEAKE-SGIDDEKMDDS 118

Query: 118 LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHC 177
             SFNELVKE+TS RQDIKAFAF+TKAML KMEH+VQ +RQRESI+WHLASHG+PKSLHC
Sbjct: 119 TASFNELVKEMTSTRQDIKAFAFRTKAMLSKMEHKVQLARQRESIFWHLASHGIPKSLHC 178

Query: 178 LCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARP 237
           LCLKL+EEYAVNA+ARSRLP PEYVS L DPSFHHVVL+TDNVLAASVV+SSTVQNS  P
Sbjct: 179 LCLKLSEEYAVNAIARSRLPPPEYVSRLADPSFHHVVLITDNVLAASVVISSTVQNSLSP 238

Query: 238 EKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIW 297
           EKLVFHI+TDKKTYTPMH+WFAIN+ +SA VE+KGLHQYDWS+EVN+GVKEMLE HRLIW
Sbjct: 239 EKLVFHIITDKKTYTPMHAWFAINTIKSAAVEIKGLHQYDWSEEVNIGVKEMLETHRLIW 298

Query: 298 SHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQ 357
           SHYY N+K EDF +EGE++R LE LSPSCLSL+NHLRIY+PELFPDLNKI+FLDDDVVVQ
Sbjct: 299 SHYYTNMKEEDFLHEGEHKRSLEALSPSCLSLLNHLRIYLPELFPDLNKIVFLDDDVVVQ 358

Query: 358 HDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417
           HD+SSL E+DLN KVVGAVV S CG+NCCP R+YKDYLNFS+ IISSN D + CAWLYGM
Sbjct: 359 HDISSLWEMDLNEKVVGAVVDSWCGENCCPARRYKDYLNFSHSIISSNLDPERCAWLYGM 418

Query: 418 NVLDLEAWRRTNITATYHKWLK 439
           NV DL+ WRR NIT  YHKWLK
Sbjct: 419 NVFDLDTWRRANITRNYHKWLK 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446879|ref|XP_002279893.1| PREDICTED: probable galacturonosyltransferase 15 [Vitis vinifera] gi|296086324|emb|CBI31765.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147794434|emb|CAN67083.1| hypothetical protein VITISV_043869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131384|ref|XP_002321071.1| glycosyltransferase [Populus trichocarpa] gi|222861844|gb|EEE99386.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526995|ref|XP_003532100.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356567408|ref|XP_003551912.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|22331857|ref|NP_191438.2| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75153682|sp|Q8L4B0.1|GAUTF_ARATH RecName: Full=Probable galacturonosyltransferase 15 gi|20466464|gb|AAM20549.1| putative protein [Arabidopsis thaliana] gi|22136432|gb|AAM91294.1| putative protein [Arabidopsis thaliana] gi|332646311|gb|AEE79832.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820714|ref|XP_002878240.1| GAUT15 [Arabidopsis lyrata subsp. lyrata] gi|297324078|gb|EFH54499.1| GAUT15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7630074|emb|CAB88296.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499376|ref|XP_003518517.1| PREDICTED: probable galacturonosyltransferase 15-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2099049540 GAUT15 "galacturonosyltransfer 0.944 0.812 0.642 7.9e-149
TAIR|locus:2180947532 GAUT14 "galacturonosyltransfer 0.948 0.828 0.393 8.2e-83
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.946 0.825 0.389 2.5e-81
TAIR|locus:2157543535 GAUT12 "galacturonosyltransfer 0.827 0.719 0.405 2.5e-74
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.666 0.578 0.371 4.9e-53
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.729 0.550 0.350 4.9e-53
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.638 0.436 0.381 7.2e-52
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.707 0.488 0.331 1.2e-51
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.655 0.567 0.352 1.5e-51
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.741 0.614 0.337 1.6e-47
TAIR|locus:2099049 GAUT15 "galacturonosyltransferase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 287/447 (64%), Positives = 333/447 (74%)

Query:     1 MKFYISTTGIKRVTISNTGTG--KRS---SAPAAALAGRRIPSSRTXXXXXXXXXXXXXX 55
             MKFYIS TGIK+VTISN G G  K S   +A AAALA RR  SSRT              
Sbjct:     1 MKFYISATGIKKVTISNPGVGIGKGSGGCAAAAAALAARRF-SSRTLLLLLLLLAIVLPF 59

Query:    56 XXXRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGR-I 114
                R AFLVLES++VC S L C+G R+F G DTSLK+ EELTRAL+E      +  GR  
Sbjct:    60 IFVRFAFLVLESASVCDSPLDCMGLRLFRGGDTSLKIGEELTRALVEETTDHQDVNGRGT 119

Query:   115 QGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKS 174
             +G+L+SF++LVKE+T KR+DI+AFA  TK MLL+ME +VQS++  E +YWHLASHG+PKS
Sbjct:   120 KGSLESFDDLVKEMTLKRRDIRAFASVTKKMLLQMERKVQSAKHHELVYWHLASHGIPKS 179

Query:   175 LHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNXXXXXXXXXXXXXXX 234
             LHCL L+L EEY+VNAMAR RLP PE VS LTDPSFHH+VLLTDN               
Sbjct:   180 LHCLSLRLTEEYSVNAMARMRLPPPESVSRLTDPSFHHIVLLTDNVLAASVVISSTVQNA 239

Query:   235 XRPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHR 294
               PEK VFHIVTDKKTYTPMH+WFAINS  S VVEVKGLHQYDW QEVN  V+EML+ HR
Sbjct:   240 VNPEKFVFHIVTDKKTYTPMHAWFAINSASSPVVEVKGLHQYDWPQEVNFKVREMLDIHR 299

Query:   295 LIWSHYYKNLKHEDFEY-EGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDD 353
             LIW  +Y+NLK  DF + EG + + L+ L+PSCL+L+NHLRIYIP+LFPDLNKI+ LDDD
Sbjct:   300 LIWRRHYQNLKDSDFSFVEGTHEQSLQALNPSCLALLNHLRIYIPKLFPDLNKIVLLDDD 359

Query:   354 VVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAW 413
             VVVQ DLSSL E DLNGKVVGAVV S CGDNCCPGRKYKDY NFS+P+ISSN   + CAW
Sbjct:   360 VVVQSDLSSLWETDLNGKVVGAVVDSWCGDNCCPGRKYKDYFNFSHPLISSNLVQEDCAW 419

Query:   414 LYGMNVLDLEAWRRTNITATYHKWLKL 440
             L GMNV DL+AWR+TNIT  Y  WL+L
Sbjct:   420 LSGMNVFDLKAWRQTNITEAYSTWLRL 446
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4B0GAUTF_ARATH2, ., 4, ., 1, ., -0.68680.94400.8129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018928001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (528 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
     •  0.899
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
     •  0.899
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
     •  0.899
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
     •  0.899
GSVIVG00033942001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)
     •  0.899
GSVIVG00031642001
SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (451 aa)
     •  0.899
GSVIVG00028034001
RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)
     •  0.899
GSVIVG00026410001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (418 aa)
     •  0.899
GSVIVG00026388001
RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)
     •  0.899
GSVIVG00022688001
RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 0.0
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 1e-142
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 1e-118
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 5e-89
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 3e-84
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 2e-77
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 2e-73
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 4e-68
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 1e-59
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 2e-57
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-41
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-16
COG1442 325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 2e-09
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 6e-07
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 0.004
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  816 bits (2110), Expect = 0.0
 Identities = 360/443 (81%), Positives = 396/443 (89%), Gaps = 5/443 (1%)

Query: 1   MKFYISTTGIKRVTISNTGTGKRSS---APAAALAGRRIPSSRTLLPVVLVLGIVLPFLF 57
           MKFYISTTGIK+VTISN G+GK S    A AAA A RR  S RTLLPV+L+L IVLPFLF
Sbjct: 1   MKFYISTTGIKKVTISNPGSGKGSGGCAAAAAAAAARRF-SGRTLLPVLLLLAIVLPFLF 59

Query: 58  VRVAFLVLESSAVCSSSLGCIGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGT 117
           VR+AFLVLES++ C+S L CIG R+F GSDTSLKLREELTRAL+EAK+   +GG   +G+
Sbjct: 60  VRIAFLVLESASACNSPLDCIGLRLFGGSDTSLKLREELTRALVEAKEQ-DDGGRGTKGS 118

Query: 118 LDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHC 177
            +SFN+LVKE+TS RQDIKAFAF+TKAMLLKME +VQS+RQRESIYWHLASHG+PKSLHC
Sbjct: 119 TESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSLHC 178

Query: 178 LCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARP 237
           LCLKLAEEYAVNAMARSRLP PE VS LTDPSFHHVVLLTDNVLAASVV+SSTVQN+A P
Sbjct: 179 LCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANP 238

Query: 238 EKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIW 297
           EKLVFHIVTDKKTYTPMH+WFAINS +SAVVEVKGLHQYDWSQEVNVGVKEMLE HRLIW
Sbjct: 239 EKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIW 298

Query: 298 SHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQ 357
           SHYY+NLK  DF++EG ++R LE LSPSCLSL+NHLRIYIPELFPDLNKI+FLDDDVVVQ
Sbjct: 299 SHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQ 358

Query: 358 HDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417
           HDLSSL ELDLNGKVVGAVV S CGDNCCPGRKYKDYLNFS+P+ISSN D + CAWLYGM
Sbjct: 359 HDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWLYGM 418

Query: 418 NVLDLEAWRRTNITATYHKWLKL 440
           NV DL+AWRRTNIT  YHKWLKL
Sbjct: 419 NVFDLKAWRRTNITEAYHKWLKL 441

Length = 535
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171 334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
COG1442 325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.97
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.97
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.95
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.95
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.69
PLN00176 333 galactinol synthase 99.66
cd06914 278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.4
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.06
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 95.4
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 87.41
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=7.8e-134  Score=1057.11  Aligned_cols=462  Identities=79%  Similarity=1.229  Sum_probs=419.6

Q ss_pred             CeEEEeecceeeEEEccCCCCcccc---chhhhhcccccccccchHHHHHHHHHhhhHHHHHHHHHhhcCccCCCCCcCc
Q 012380            1 MKFYISTTGIKRVTISNTGTGKRSS---APAAALAGRRIPSSRTLLPVVLVLGIVLPFLFVRVAFLVLESSAVCSSSLGC   77 (465)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (465)
                      |||||||||||+|||||.|.|....   .+...||+||+ ||||+||++|+|||||||+|||+|++||||+++|||++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~c~s~~~c   79 (535)
T PLN02867          1 MKFYISTTGIKKVTISNPGSGKGSGGCAAAAAAAAARRF-SGRTLLPVLLLLAIVLPFLFVRIAFLVLESASACNSPLDC   79 (535)
T ss_pred             CeeEEecCceeEEEecCCCCCCCCCcchHHHHHHhhcee-eheeHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence            9999999999999999976444333   33347899999 9999999999999999999999999999999999998999


Q ss_pred             cccccccCCCchhHHHHHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhh
Q 012380           78 IGRRIFSGSDTSLKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSR  157 (465)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ee~~~~~~  157 (465)
                      +|||+.||+|++.+++||++|+|.|++.++.++... +++|+||++++.+|++.+|||+++++|||||++++|||++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~  158 (535)
T PLN02867         80 IGLRLFGGSDTSLKLREELTRALVEAKEQDDGGRGT-KGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSAR  158 (535)
T ss_pred             cchhhhcCCCchhHHHHHHHHHHHHhhhccccCcch-hhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988889999999999999999999776555543 2399999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhhcCCCccchhhhHHHHHHHHhchhhhcCCCCCccCCCCCCCCccEEEEEeCCccccchhhhHhhhcCCCC
Q 012380          158 QRESIYWHLASHGVPKSLHCLCLKLAEEYAVNAMARSRLPSPEYVSHLTDPSFHHVVLLTDNVLAASVVVSSTVQNSARP  237 (465)
Q Consensus       158 ~~~~~~~~la~~~~Pk~~hcl~~rL~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihIv~~sDn~la~sVvI~Siv~Ns~~p  237 (465)
                      +|++|++||||+|+|||+|||+||||+|||+++++++++|++|.+|+|+||+++|+|++|||+||+||||||++.|+++|
T Consensus       159 ~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p  238 (535)
T PLN02867        159 QRESIYWHLASHGIPKSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANP  238 (535)
T ss_pred             HHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEeCCCCCcccchhhhhcccccchheecccccccccchhhhhHHHHHHHhhhHHHhhcccCcccccccchhhhh
Q 012380          238 EKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRR  317 (465)
Q Consensus       238 ~~i~FHIvtD~i~~~~m~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl~~le~~~~i~~~y~~~~~~~~i~~p~~~~~  317 (465)
                      +++|||||||++||.+|++||.+||+++|+|||+|+|+|+|++.+|+||++|+|+.+.++.+||++........+.....
T Consensus       239 ~~~VfHvvTD~~ny~aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (535)
T PLN02867        239 EKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKR  318 (535)
T ss_pred             cceEEEEecCccccHHHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhcccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999888788887643322122333345


Q ss_pred             hhccCCCCccchhhhHHhhhccccCCCCcEEEEecceeeecChHHHHhcCCCCCeEEEEeccCCCCCCCCcccccccccc
Q 012380          318 CLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNF  397 (465)
Q Consensus       318 ~l~~~~~~~iS~~~y~Rf~LPeifP~ldKVLYLD~DVVVq~DLseLw~iDL~gkvigAVeDc~~~~~~~~~~r~~~yLnf  397 (465)
                      ++++++|+|+|+++|+||+||++||+++||||||+|||||+||++||++||+|+++|||.|+.+....++.+++++|+||
T Consensus       319 ~~~~~~pkylS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNf  398 (535)
T PLN02867        319 SLEALSPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNF  398 (535)
T ss_pred             chhhcChhhhhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccc
Confidence            67789999999999999999999999999999999999999999999999999999999885433222234677889999


Q ss_pred             CccccccCCCCCCCccccceeeEehHHHHHhcHHHHHHHHHHhhcc--cccccccchhHHHHHhcCccC
Q 012380          398 SYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHF--HQLCLLWMVTCILLILHGTWL  464 (465)
Q Consensus       398 s~p~i~~~f~~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~--~~l~~~~d~~~l~l~F~~rwl  464 (465)
                      ++|.+..+|+|++||||||||||||++||++++|+++++|++++.+  ..+|+++..++++++|+|+|.
T Consensus       399 snp~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~  467 (535)
T PLN02867        399 SHPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVH  467 (535)
T ss_pred             cchhhhccCCCCCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEE
Confidence            9999988999999999999999999999999999999999999865  467766666788899999985

>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
1g9r_A 311 Glycosyl transferase; alpha-beta structure; HET: U 7e-33
3tzt_A276 Glycosyl transferase family 8; structural genomics 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  125 bits (316), Expect = 7e-33
 Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 59/256 (23%)

Query: 212 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 269
            +V   D+       V   S         ++ FH++                        
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDA---------------------- 38

Query: 270 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 329
                    S+      +  + A+        + +     ++ G        L+   +S+
Sbjct: 39  -------GISEAN----RAAVAANLRGGGGNIRFIDVNPEDFAGFP------LNIRHISI 81

Query: 330 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 389
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +     D     +
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI-----DLFVERQ 136

Query: 390 K-YKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCL 448
           + YK  +  +              +  G+ +++L+ WRR +I     +W  +E +  +  
Sbjct: 137 EGYKQKIGMA---------DGEYYFNAGVLLINLKKWRRHDIFKMSSEW--VEQYKDVMQ 185

Query: 449 LWMVTCILLILHGTWL 464
                 +  +  G   
Sbjct: 186 YQDQDILNGLFKGGVC 201
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A 311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 99.73
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.62
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.3e-34  Score=286.34  Aligned_cols=199  Identities=15%  Similarity=0.133  Sum_probs=130.8

Q ss_pred             ccEEEEEeCCccc--cchhhhHhhhcCCCCCceEEEEEeCCCCCcccchhhhhcccccchheecccccccccchhhhhHH
Q 012380          210 FHHVVLLTDNVLA--ASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK  287 (465)
Q Consensus       210 ~ihIv~~sDn~la--~sVvI~Siv~Ns~~p~~i~FHIvtD~i~~~~m~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl  287 (465)
                      .+|||+++|+.|.  ++|+|+|+++|+++ ++++|||++++++.+..+.                              +
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~------------------------------L   53 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKD------------------------------L   53 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHH------------------------------H
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHH------------------------------H
Confidence            4899999998664  89999999999986 6799999999997532110                              0


Q ss_pred             HHHHHhhhHHHhhcccCcccccccchhhhhhhccCCCCccchhhhHHhhhccccC-CCCcEEEEecceeeecChHHHHhc
Q 012380          288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL  366 (465)
Q Consensus       288 ~~le~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~iS~~~y~Rf~LPeifP-~ldKVLYLD~DVVVq~DLseLw~i  366 (465)
                      +++-....+...++      .++ ++.+. .  ....+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus        54 ~~~~~~~~~~i~~~------~~~-~~~~~-~--~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~  123 (276)
T 3tzt_A           54 GEDLKKFSYTLYPI------RAT-DDLFS-F--AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT  123 (276)
T ss_dssp             HHHHHTTTCEEEEE------ECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred             HHHHHHcCCEEEEE------EeC-HHHHh-c--CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence            00000000000111      111 01111 1  1223578999999999999999 799999999999999999999999


Q ss_pred             CCCCCeEEEEeccCCCCCCCCccccccccccCccccccCCCCCCCccccceeeEehHHHHHhcHHHHHHHHHHhhccccc
Q 012380          367 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQL  446 (465)
Q Consensus       367 DL~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l  446 (465)
                      ||+|+++|||+||....       ..++.+      ..++.+..||||||||||||++||++++++++++|++++..+. 
T Consensus       124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~-  189 (276)
T 3tzt_A          124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL-  189 (276)
T ss_dssp             CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred             CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc-
Confidence            99999999999997531       111111      1234445699999999999999999999999999999987654 


Q ss_pred             ccccchhHHHHHhcCccC
Q 012380          447 CLLWMVTCILLILHGTWL  464 (465)
Q Consensus       447 ~~~~d~~~l~l~F~~rwl  464 (465)
                       .++||+++|++|+|+|.
T Consensus       190 -~~~DQd~LN~~f~~~~~  206 (276)
T 3tzt_A          190 -LLPDQDILNAMYGDRIY  206 (276)
T ss_dssp             -----CHHHHHHHGGGEE
T ss_pred             -cCCChhHHHHHHhCCEE
Confidence             46899999999999985
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 3e-13
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 67.6 bits (164), Expect = 3e-13
 Identities = 37/255 (14%), Positives = 81/255 (31%), Gaps = 57/255 (22%)

Query: 212 HVVLLTDN--VLAASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVE 269
            +V   D+       V   S         ++ FH++    +     +  A        + 
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 270 VKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSL 329
                  +                   ++ +  N++H                    +S+
Sbjct: 61  F---IDVNPED----------------FAGFPLNIRH--------------------ISI 81

Query: 330 MNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGR 389
             + R+ + E   D +K+L+LD DV+V+  L+ L + DL    +GA +            
Sbjct: 82  TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE---- 137

Query: 390 KYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLL 449
            YK  +  +              +  G+ +++L+ WRR +I     +W  +E +  +   
Sbjct: 138 GYKQKIGMADG---------EYYFNAGVLLINLKKWRRHDIFKMSSEW--VEQYKDVMQY 186

Query: 450 WMVTCILLILHGTWL 464
                +  +  G   
Sbjct: 187 QDQDILNGLFKGGVC 201

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.72
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=1.5e-33  Score=273.94  Aligned_cols=199  Identities=19%  Similarity=0.256  Sum_probs=147.9

Q ss_pred             cEEEEEeCCccc--cchhhhHhhhcCCCCCceEEEEEeCCCCCcccchhhhhcccccchheecccccccccchhhhhHHH
Q 012380          211 HHVVLLTDNVLA--ASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKE  288 (465)
Q Consensus       211 ihIv~~sDn~la--~sVvI~Siv~Ns~~p~~i~FHIvtD~i~~~~m~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl~  288 (465)
                      ||||+++|+.|.  ++|+++|+++|+++ .+++|||++++++.+........                            
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~----------------------------   51 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN----------------------------   51 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT----------------------------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH----------------------------
Confidence            699999997554  88999999998876 67999999999985421110000                            


Q ss_pred             HHHHhhhHHHhhcccCcccccccchhhhhhhccCCCCccchhhhHHhhhccccCCCCcEEEEecceeeecChHHHHhcCC
Q 012380          289 MLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDL  368 (465)
Q Consensus       289 ~le~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~iS~~~y~Rf~LPeifP~ldKVLYLD~DVVVq~DLseLw~iDL  368 (465)
                       ++. ......++      .++. ..+.. . ....+++|.++|+||++|++||+++||||||+|+||++||++||++|+
T Consensus        52 -~~~-~~~~i~~~------~~~~-~~~~~-~-~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~  120 (282)
T d1ga8a_          52 -LRG-GGGNIRFI------DVNP-EDFAG-F-PLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL  120 (282)
T ss_dssp             -SGG-GTTTEEEE------ECCG-GGGTT-S-CCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC
T ss_pred             -HHH-cCCeEEEE------ECCc-hHhcc-c-cccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhccc
Confidence             000 00001111      1110 11111 1 123468899999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCCCCCccccccccccCccccccCCCCCCCccccceeeEehHHHHHhcHHHHHHHHHHhhccccccc
Q 012380          369 NGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCL  448 (465)
Q Consensus       369 ~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l~~  448 (465)
                      +++.+|||.|+....    ...+...+         ++.+..+||||||||+|+++||+++++++++++++++....  .
T Consensus       121 ~~~~~aa~~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~--~  185 (282)
T d1ga8a_         121 GDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM--Q  185 (282)
T ss_dssp             TTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC--S
T ss_pred             ccceeeeehhhhhhh----hhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCc--c
Confidence            999999999975321    11222222         45567899999999999999999999999999999987654  4


Q ss_pred             ccchhHHHHHhcCccC
Q 012380          449 LWMVTCILLILHGTWL  464 (465)
Q Consensus       449 ~~d~~~l~l~F~~rwl  464 (465)
                      .+||+++|++|+|+|.
T Consensus       186 ~~DQd~LN~~f~~~~~  201 (282)
T d1ga8a_         186 YQDQDILNGLFKGGVC  201 (282)
T ss_dssp             STHHHHHHHHHTTSEE
T ss_pred             cCchhHHHHHhcCCEE
Confidence            6899999999999874
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure