Citrus Sinensis ID: 012407

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----

MENEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVILKSSKLSGNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

ccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHccccEEEEEcccccccccccccccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccEEEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEccccccccccccccccHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEcccEEEccccHHHHccccccEEEEcccccccccccccccEEEEEcccccccHHHHHHHcHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHcc

ccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccEEEEEEcccccccccEcHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccEEEccccccHHHHHccccHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccHccccccccccEEccccccccccccEEEEEEcccEEEcccccccccccccEEEEcccccccccccccccEEEccccccccccHHHHHHcHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHcc

MENEANISIYRAARTIKRRQNTLYNALRSiyddsifvgeisqlwpqlpllanlrcglwysskfhstcyfkstdghtnnwsfnTSRLNLHVALLAGQkggciivdstrkgkrfpdsmsktipiwtcVLNRSVYKYRKKMCNGGVVlakgnasdehekstsqftadwdcslhlplwvsdtekAAIDDRVEEWIKELDASGADIASLASClkkplrplwisqKTVIwlnevpdhdswdftpiILVSassqsgiiqnrttsefswnyipgagddeeswargltpnlfwkNAYDlinsgpdicnqkVADIVEKDRVYraqrgqiapqVILKssklsgnssdlshvepplssdisdlnidlkasdesctiswlgstnlavgtsqhaaeernvdcilncdqESITVCLSNaeayfhlpmvnsklDRFSllrnlpsavnFVKLNISKGKTLLICchsgkdfylpsyleklhs

meneanisIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGgciivdstrkgkrfpdsmsktipiwtcvLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYraqrgqiapqvilkssklsgnssdlshvEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

MENEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVIlkssklsgnssdlsHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

******ISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAK************QFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVI******************************L***DESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYL*****

****************KRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRK***********************QFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSA****************WNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVE*****************LKSSKLSG******HVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESIT***SNA*******************RNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

MENEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKG*************TADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVILKSSKL************PLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

*******SIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKY****************************ADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQS*********EFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYR*QRGQIAPQVILKSSKLSGNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		464	2.2.26 [Sep-21-2011]
Q10181		453	Uncharacterized protein C	yes	no	0.549	0.562	0.368	3e-47
P23796		513	tRNA A64-2'-O-ribosylphos	yes	no	0.553	0.500	0.330	6e-37

>sp\|Q10181\|YAW6_SCHPO Uncharacterized protein C3F10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.06c PE=4 SV=1	Back alignment and function desciption

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 160/288 (55%), Gaps = 33/288 (11%)

Query: 25  NALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHS--TCYFKSTDGHTNNWSFN 82
           N L SI  D+ FV  +   +P    + N RCG WY ++ H+  + YFKSTDGHT  WSF+
Sbjct: 22  NRLLSIAHDAKFVDSVIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGHTGQWSFS 81

Query: 83  TSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGG 142
             RLNLH+        G IIVDSTR+GKR PD++SKTIPIW   LN+ V++  +      
Sbjct: 82  CRRLNLHLLNEITTCDGLIIVDSTRRGKRMPDALSKTIPIWIATLNKCVFERLRPHSFPN 141

Query: 143 VVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIA 202
             LA                        LP ++ DTEK++I  R++ ++  L  SG D+ 
Sbjct: 142 ARLA-----------------------FLPPFLPDTEKSSILQRLDGFVDSLMQSGIDLD 178

Query: 203 SLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWN 262
           +LA+ L KP+RPLW++  + +   +  ++    FT ++LV+AS+Q   +QN  + E  + 
Sbjct: 179 ALAAKLTKPIRPLWVTPASRLTSAQFEEY----FT-VVLVTASAQ---VQNGYSREHGFL 230

Query: 263 YIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDR 310
           Y+ GA DDEE W+ GLTP +FW+N   ++    +   QK++ ++   R
Sbjct: 231 YVQGAADDEEEWSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTR 278

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|P23796\|RIT1_YEAST tRNA A64-2'-O-ribosylphosphate transferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIT1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		464
449487959		520	PREDICTED: uncharacterized protein C3F10	0.995	0.888	0.689	0.0
449446518		520	PREDICTED: uncharacterized protein C3F10	0.995	0.888	0.687	0.0
225445094		520	PREDICTED: uncharacterized protein LOC10	0.956	0.853	0.713	0.0
255546305		529	transferase, transferring pentosyl group	0.952	0.835	0.708	0.0
224143634		503	predicted protein [Populus trichocarpa]	0.924	0.852	0.668	1e-178
357520857		515	tRNA A64-2'-O-ribosylphosphate transfera	0.933	0.840	0.685	1e-177
357520859		450	tRNA A64-2'-O-ribosylphosphate transfera	0.922	0.951	0.687	1e-177
357520861		524	tRNA A64-2'-O-ribosylphosphate transfera	0.913	0.809	0.690	1e-176
2651300		505	putative initiator tRNA phosphoribosyl-t	0.963	0.885	0.667	1e-175
42569807		521	initiator tRNA phosphoribosyl transferas	0.961	0.856	0.663	1e-175

>gi\|449487959\|ref\|XP_004157886.1\| PREDICTED: uncharacterized protein C3F10.06c-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/464 (68%), Positives = 386/464 (83%), Gaps = 2/464 (0%)

Query: 1   MENEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYS 60
           ME+ A +SIY+A R IKRR NTLYNALRSIY+DSIFVGEI+QLWP+LPLLANLRCGLWYS
Sbjct: 1   MEDGAKLSIYKAIRNIKRRDNTLYNALRSIYEDSIFVGEIAQLWPELPLLANLRCGLWYS 60

Query: 61  SKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTI 120
            KFHS CYFKSTDGH NNWSF+TSRLNLHVA LAGQKGGC IVDSTR+GKRFPDSMSKTI
Sbjct: 61  QKFHSNCYFKSTDGHNNNWSFSTSRLNLHVAQLAGQKGGCFIVDSTRRGKRFPDSMSKTI 120

Query: 121 PIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEK 180
           PIWTCVLNRS+ K+  K+    + L + + SD   ++  +    WDCSLHLPLWVS+TEK
Sbjct: 121 PIWTCVLNRSISKHLNKIHGSSLELGEPSISDVLAENGKECAVGWDCSLHLPLWVSETEK 180

Query: 181 AAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPII 240
           AAI++R+EEW K+L+  GAD+A+LAS L+KPLRPLWISQ++VIWLNEVPDHDSWDFTPII
Sbjct: 181 AAIEERLEEWTKQLEDCGADVATLASILRKPLRPLWISQRSVIWLNEVPDHDSWDFTPII 240

Query: 241 LVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQ 300
           LV+ASS +G++Q RTT+EFSWNYI GAGDDEESWARGLTPNLFWK+A+DL++SGPD+CNQ
Sbjct: 241 LVNASSSTGVVQQRTTTEFSWNYISGAGDDEESWARGLTPNLFWKHAHDLMSSGPDVCNQ 300

Query: 301 KVADIVEKDRVYRAQRGQIAPQVILKSSKLSGNSSDLSHVEPPLSSDISDLNIDLKASDE 360
           KVA+IVEKDRVYRA RG  APQ+ +KS K  G+S+ +  +E  LS DISD  +D+K+SD 
Sbjct: 301 KVAEIVEKDRVYRALRGNDAPQISVKSQK--GSSTQVLPIEQMLSFDISDAELDVKSSDG 358

Query: 361 SCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRF 420
           +C +SWLG T LAVG+SQ+A    +VDCILNCDQE+++VCL  A AY HLP+V SK+DRF
Sbjct: 359 NCGLSWLGLTRLAVGSSQYAVTACDVDCILNCDQETLSVCLPVASAYLHLPLVMSKMDRF 418

Query: 421 SLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLHS 464
           SL RNL SAV+F KLN+++GK LL+CC +G+D  +   L  L S
Sbjct: 419 SLSRNLASAVDFAKLNLNQGKRLLVCCSNGEDISICVCLAILTS 462

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449446518\|ref\|XP_004141018.1\| PREDICTED: uncharacterized protein C3F10.06c-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225445094\|ref\|XP_002280444.1\| PREDICTED: uncharacterized protein LOC100254132 [Vitis vinifera] gi\|297738758\|emb\|CBI28003.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255546305\|ref\|XP_002514212.1\| transferase, transferring pentosyl groups, putative [Ricinus communis] gi\|223546668\|gb\|EEF48166.1\| transferase, transferring pentosyl groups, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224143634\|ref\|XP_002325024.1\| predicted protein [Populus trichocarpa] gi\|222866458\|gb\|EEF03589.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357520857\|ref\|XP_003630717.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula] gi\|355524739\|gb\|AET05193.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357520859\|ref\|XP_003630718.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula] gi\|355524740\|gb\|AET05194.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357520861\|ref\|XP_003630719.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula] gi\|355524741\|gb\|AET05195.1\| tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|2651300\|gb\|AAB87580.1\| putative initiator tRNA phosphoribosyl-transferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|42569807\|ref\|NP_181589.3\| initiator tRNA phosphoribosyl transferase-like protein [Arabidopsis thaliana] gi\|30725316\|gb\|AAP37680.1\| At2g40570 [Arabidopsis thaliana] gi\|110736015\|dbj\|BAE99980.1\| putative initiator tRNA phosphoribosyl-transferase [Arabidopsis thaliana] gi\|330254755\|gb\|AEC09849.1\| initiator tRNA phosphoribosyl transferase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		464
TAIR\|locus:2061863		521	AT2G40570 [Arabidopsis thalian	0.935	0.833	0.665	7.3e-162
UNIPROTKB\|G4MYV2		497	MGG_08167 "Initiator tRNA phos	0.275	0.257	0.510	8.7e-50
DICTYBASE\|DDB_G0286701		552	DDB_G0286701 "tRNA A64-2'-O-ri	0.476	0.400	0.428	9.5e-50
POMBASE\|SPAC3F10.06c		453	SPAC3F10.06c "initiator methio	0.234	0.240	0.495	5.1e-43
ASPGD\|ASPL0000069728		475	AN7709 [Emericella nidulans (t	0.269	0.263	0.476	7.5e-41
SGD\|S000004896		513	RIT1 "2'-O-ribosyl phosphate t	0.553	0.500	0.330	1.2e-37
CGD\|CAL0004801		437	RIT1 [Candida albicans (taxid:	0.271	0.288	0.488	9.6e-35

TAIR\|locus:2061863 AT2G40570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 296/445 (66%), Positives = 352/445 (79%)

Query:     8 SIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHSTC 67
             SIYRAAR IKRR N+LYNALRSIY DSIFV EIS LWP+LPL+ANLRCGLWYS KF +TC
Sbjct:    15 SIYRAARNIKRRDNSLYNALRSIYQDSIFVHEISLLWPKLPLVANLRCGLWYSEKFDATC 74

Query:    68 YFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVL 127
             YFKSTDGHTNN SFNTSRLNLH+ LLAG+KGGCII+DSTRKGKRFPDSMSKTIP+W+CV+
Sbjct:    75 YFKSTDGHTNNLSFNTSRLNLHLPLLAGEKGGCIIIDSTRKGKRFPDSMSKTIPMWSCVV 134

Query:   128 NRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRV 187
             NRS++ +  ++CN    +  G  SD+   +  +    WDCSLHLPLWVS+TE+A+I+ R+
Sbjct:   135 NRSIFNHWNRLCN----IDAGLTSDDDGDNIRKLLDKWDCSLHLPLWVSNTERASIEARL 190

Query:   188 EEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQ 247
             +EW +ELD SGADIASLASCL+KPLRPLW+SQKTVIWLNEVP+HDSWDFTP+ILVSAS+ 
Sbjct:   191 DEWTRELDESGADIASLASCLRKPLRPLWVSQKTVIWLNEVPEHDSWDFTPLILVSASA- 249

Query:   248 SGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVE 307
             SG +QNRT+SEFSWNYIPGAGDDEESWARGL+PN+FW +  DLI+SGPD+CNQKVA+IVE
Sbjct:   250 SGELQNRTSSEFSWNYIPGAGDDEESWARGLSPNVFWTHVDDLIHSGPDLCNQKVAEIVE 309

Query:   308 KDRVYRAQRGQIAPQVIXXXXXXXXXXXXXXHVEPPLSSDISDLNIDLKASDESCTISWL 367
              DRVYRA RGQ APQV+              H +   S +I  L+  +   DE   + WL
Sbjct:   310 NDRVYRAHRGQEAPQVVVKCSKSNGGVN---HAK---SDEILCLSAQIPKVDEERLVFWL 363

Query:   368 GSTNLAVGTSQHAAEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLP 427
              STNLAVG SQ A +E ++DCILNCDQ  I+V +S  E + HLPM  SK DRFS+ RNLP
Sbjct:   364 SSTNLAVGASQVACKETSIDCILNCDQNPISVPVSYLEEHLHLPMKGSKFDRFSISRNLP 423

Query:   428 SAVNFVKLNISKGKTLLICCHSGKD 452
              AVNF KL +S GK +L+CC  G+D
Sbjct:   424 PAVNFAKLKMSSGKKVLVCCQDGED 448

GO:0005634 "nucleus" evidence=ISM

GO:0006417 "regulation of translation" evidence=ISS

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA;ISS

UNIPROTKB\|G4MYV2 MGG_08167 "Initiator tRNA phosphoribosyl transferase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286701 DDB_G0286701 "tRNA A64-2'-O-ribosylphosphate transferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC3F10.06c SPAC3F10.06c "initiator methionine tRNA 2'-O-ribosyl phosphate transferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000069728 AN7709 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000004896 RIT1 "2'-O-ribosyl phosphate transferase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

CGD\|CAL0004801 RIT1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016666001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (520 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		464
pfam04179		441	pfam04179, Init_tRNA_PT, Initiator tRNA phosphorib	1e-133

>gnl\|CDD\|217942 pfam04179, Init_tRNA_PT, Initiator tRNA phosphoribosyl transferase	Back alignment and domain information

 Score =  391 bits (1006), Expect = e-133
 Identities = 148/445 (33%), Positives = 217/445 (48%), Gaps = 76/445 (17%)

Query: 16  IKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSS--KFHSTCYFKSTD 73
           +KR   ++ N L+SI  D+ FV  ++  +P LPL+AN RCGLWY        + YFKSTD
Sbjct: 2   LKRSALSIKNRLQSILHDAKFVESVADAYP-LPLVANERCGLWYIPPKIKAGSAYFKSTD 60

Query: 74  GHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYK 133
           GHT  WSF+T RLNLH+  + G+ GGCIIVDSTR+GK  PD++SKTIPIW  VLNR+++ 
Sbjct: 61  GHTGQWSFSTRRLNLHLLPIIGENGGCIIVDSTRRGKLMPDALSKTIPIWCAVLNRALFP 120

Query: 134 YRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPL-WVSDTEKAAIDDRVEEWIK 192
                                  S  Q+    D  L+ P   VSD+E + I+ R++ ++K
Sbjct: 121 -----------------------SDGQY-DKEDHVLYTPPSMVSDSEHSQIEKRIDGFVK 156

Query: 193 ELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQ 252
            L   G DI  L   L KPLRP+W++ +       + +    DF P++L +AS +   +Q
Sbjct: 157 SLLKLGLDIEKLRQQLGKPLRPIWVTPE-SQLSPTIEEPKFEDFHPVVLCTASRR---VQ 212

Query: 253 NRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVY 312
               SE  + Y+ GAGDD E WA GLTPN+FW N   L+ +  +     + ++V +    
Sbjct: 213 GGEDSEGGFTYVQGAGDDHELWAHGLTPNVFWANKEQLLATSEEDLPDLIEELVAESSSS 272

Query: 313 RAQRGQIAPQVILKSSKLSGNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNL 372
               G                +++L                             +G+ + 
Sbjct: 273 STGSGAELIVK---------PTTNLY----------------------------IGAIDT 295

Query: 373 AVGTSQHAAEERNVDCILNCDQ---ESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSA 429
            +  S    EE   DC++NC +   ES T      +   HL + +SK     L + LP  
Sbjct: 296 NLNASLLNKEENEFDCVINCSESPTESETW--EKQKKRLHLGLGSSKKGSRDLRKALPPI 353

Query: 430 VNFVKLNISKG--KTLLICCHSGKD 452
            +F+KL +S    K +L+ C SGKD
Sbjct: 354 CDFIKLQLSSDPSKKILVACDSGKD 378

This enzyme (EC:2.4.2.-) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. Length = 441

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		464
PF04179		451	Init_tRNA_PT: Initiator tRNA phosphoribosyl transf	100.0
KOG2634		476	consensus Initiator tRNA phosphoribosyl-transferas	100.0
smart00195		138	DSPc Dual specificity phosphatase, catalytic domai	97.84
cd00127		139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	97.83
PF00782		133	DSPc: Dual specificity phosphatase, catalytic doma	97.74
PRK12361		547	hypothetical protein; Provisional	96.52
KOG1716		285	consensus Dual specificity phosphatase [Defense me	96.07
KOG2634		476	consensus Initiator tRNA phosphoribosyl-transferas	94.53
KOG1717		343	consensus Dual specificity phosphatase [Defense me	93.62
COG2453		180	CDC14 Predicted protein-tyrosine phosphatase [Sign	87.17
PTZ00242		166	protein tyrosine phosphatase; Provisional	84.25
PF03162		164	Y_phosphatase2: Tyrosine phosphatase family; Inter	81.45

>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2	Back alignment and domain information

Probab=100.00  E-value=6.7e-143  Score=1119.27  Aligned_cols=384  Identities=45%  Similarity=0.815  Sum_probs=338.5

Q ss_pred             HhhhhcCChhHhhhhhHHhHHHHHHHHHhcCCCCccccccccccccc--CCCceeeeecCCCCCccccccccccchhHHH
Q 012407           15 TIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSS--KFHSTCYFKSTDGHTNNWSFNTSRLNLHVAL   92 (464)
Q Consensus        15 ~lkr~~~sl~NRL~SI~~D~~FV~~v~~~~~~lPlvaNeRCG~WY~~--~~~~s~YFKSTDGH~~~W~FS~rRLNLhll~   92 (464)
                      +|||+++|||||||||++|++||++|++.| +||||||||||+||+|  .+++||||||||||||||+||+||||||||+
T Consensus         1 ~l~r~~~s~~NrL~SI~~D~~Fv~~v~~~~-~~plvaN~RCG~WYv~p~~~~~s~YFKSTDGH~~~W~Fs~rRlNlhll~   79 (451)
T PF04179_consen    1 DLKRESLSLYNRLQSILHDAKFVREVAALY-QLPLVANERCGLWYVPPDSKAGSAYFKSTDGHTGQWSFSLRRLNLHLLP   79 (451)
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHhh-cCcccccccccccccCccccCcceEEeccCCCCCccccccccccHHHHH
Confidence            589999999999999999999999999999 8999999999999996  6899999999999999999999999999999


Q ss_pred             HhhccCceEEEcCCCCCCCCCCCcccccchHHHHHHHHhhhhhhhhcCCCcccccCCCCccccccccccCCCCCCCccCC
Q 012407           93 LAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLP  172 (464)
Q Consensus        93 ~i~~~gG~iIVDSTRrGKr~PDAlSKTIPIWcaVlNr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~P  172 (464)
                      +|+++||||||||||||||||||||||||||||||||++++...            ..           ..+|++.||+|
T Consensus        80 ~~~~~~G~iiVDsTRrGK~~PDalSkTiPIWcaVlN~~~~~~~~------------~~-----------~~~~~~~l~~P  136 (451)
T PF04179_consen   80 LIAEHGGCIIVDSTRRGKRMPDALSKTIPIWCAVLNRALFPSKP------------DE-----------SDDWDHWLHTP  136 (451)
T ss_pred             HhhcCCcEEEEecccCCCCCChhhhccccHHHHHHHHHHcccCc------------cc-----------cccccccccCC
Confidence            99999999999999999999999999999999999999999861            11           12799999988


Q ss_pred             C-CCCccHHHHHHhhhHHHHHHHHHcCCChHHHHhhcCCCeeeEeeecCCccCCCCCCCCCCCCeeEEEEeecCcccccc
Q 012407          173 L-WVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGII  251 (464)
Q Consensus       173 ~-~Vs~sE~~qI~~~i~~~v~~l~~~~~Dl~~l~~~L~KPLRP~Wi~~~~~~~~~~~~~~~~~df~piil~SaS~~v~~~  251 (464)
                      + |||+|||+||++|||+||++|+++++|++.|+++|+|||||+||+|++. +.++.++...++||||||||||+++   
T Consensus       137 ~~~v~~sE~~qI~~~i~~fv~~l~~~~~d~~~l~~~L~KPLrp~Wi~~~~~-~~~~~~~~~~~~f~piil~SAS~~v---  212 (451)
T PF04179_consen  137 PSWVSESEHAQIEARIPGFVESLKALGLDLESLRSQLGKPLRPLWITPESI-WHDEWESPEDEDFYPIILCSASRRV---  212 (451)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCeeeEEECCCcc-cCccccccCCCCEeEEEEEcCCCCC---
Confidence            7 9999999999999999999999999999999999999999999998876 4556666677999999999999996   


Q ss_pred             ccccccCCcceecCCCCCCcccccCCCChhhhhhchhhhhccCCcchhHHHHHHHHhhhhhhhhccCCccceeecccccC
Q 012407          252 QNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVILKSSKLS  331 (464)
Q Consensus       252 ~~~~~~~~~~~YIQGAgDD~E~Wa~GLTP~lFW~h~~~Ll~~~~~~l~~lV~~LV~~~~~~~a~~~~~~~~~~v~~~~~~  331 (464)
                      ++++++++||.||||||||||+||+||||++||+|+++||++++++|+++|++||++++...+..+..  ++.       
T Consensus       213 ~~~~~~~~g~~YIQGAgDD~E~Wa~GLTP~lFW~~~~~Ll~~~e~~L~~lI~~LV~~~~~~~~~~~~~--~i~-------  283 (451)
T PF04179_consen  213 QGGEDSEGGFTYIQGAGDDHESWARGLTPQLFWANKDELLSASEDDLPELIAELVEEERSSSASSGST--QID-------  283 (451)
T ss_pred             CCCCccccCcccccCCCCChhhccCCCChHHHHhCHHHHhcCCHHHHHHHHHHHHHHhhhcccccccc--ccc-------
Confidence            45667889999999999999999999999999999999999999999999999999875432211110  010       


Q ss_pred             CCCCCCCCCCCCCCCCccccccccccCCcccceeeeCCcceEEccccc---------ccccCCccEEEecCCCccc-ccc
Q 012407          332 GNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQH---------AAEERNVDCILNCDQESIT-VCL  401 (464)
Q Consensus       332 ~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~ig~t~l~ig~~~~---------~~~~~~~d~ii~c~~~~~~-~~~  401 (464)
                                +                  .......++++|+||....         ......||+||+|++.+.. .++
T Consensus       284 ----------~------------------~~~~~~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~  335 (451)
T PF04179_consen  284 ----------P------------------SFNKIDPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESW  335 (451)
T ss_pred             ----------c------------------cccccccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccccccc
Confidence                      0                  0111223567777777643         2356679999999986654 456


Q ss_pred             CCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcC--CCcEEEEcCCCCcchhhheecccC
Q 012407          402 SNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISK--GKTLLICCHSGKDFYLPSYLEKLH  463 (464)
Q Consensus       402 ~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~--~~~ILV~C~sGkDlSVGv~LalL~  463 (464)
                      ..++.+||++|+++|+||++||++||+|++|+..+|++  +++|||||+||||+||||+||||.
T Consensus       336 ~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc  399 (451)
T PF04179_consen  336 PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILC  399 (451)
T ss_pred             CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHH
Confidence            77889999999999999999999999999999999998  889999999999999999999985

4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups

>KOG2634 consensus Initiator tRNA phosphoribosyl-transferase [RNA processing and modification]	Back alignment and domain information

>smart00195 DSPc Dual specificity phosphatase, catalytic domain	Back alignment and domain information

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases	Back alignment and domain information

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>KOG2634 consensus Initiator tRNA phosphoribosyl-transferase [RNA processing and modification]	Back alignment and domain information

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]	Back alignment and domain information

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00242 protein tyrosine phosphatase; Provisional	Back alignment and domain information

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		464
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 51/332 (15%), Positives = 106/332 (31%), Gaps = 75/332 (22%)

Query: 127 LNRSVY-KYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDD 185
           +   +Y + R ++ N   V AK N S                            +A ++ 
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------------------YLKLRQALLEL 147

Query: 186 RVEEWIKELDASGADIASLAS--CLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVS 243
           R  + +      G+    +A   CL   ++     +  + WLN + + +S +    +L  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLN-LKNCNSPETVLEMLQK 204

Query: 244 ASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVA 303
              Q  I  N T+     + I       ++  R L  +  ++N   ++    ++ N K  
Sbjct: 205 LLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAW 259

Query: 304 D---------IVEKDR-VYRAQRGQIAPQVILKSSKLSGNSSDLSHVEPPLSSDISDLNI 353
           +         +  + + V           + L    ++        + P     +    +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--------LTPDEVKSLLLKYL 311

Query: 354 DLKASD---ESCTISWLGSTNLAVGTSQHAAEERNVDCI------LNCDQ--ESITVCLS 402
           D +  D   E  T +        +  S  A   R+          +NCD+    I   L+
Sbjct: 312 DCRPQDLPREVLTTN-----PRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 403 NAEAYFHLPMVNSKL-DRFSLLR---NLPSAV 430
             E     P    K+ DR S+     ++P+ +
Sbjct: 365 VLE-----PAEYRKMFDRLSVFPPSAHIPTIL 391

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		464
3s4e_A		144	Dual specificity protein phosphatase 19; PTP, prot	97.91
3emu_A		161	Leucine rich repeat and phosphatase domain contain	97.91
2j16_A		182	SDP-1, tyrosine-protein phosphatase YIL113W; hydro	97.84
2hxp_A		155	Dual specificity protein phosphatase 9; human phos	97.75
2nt2_A		145	Protein phosphatase slingshot homolog 2; alpha/bet	97.73
3ezz_A		144	Dual specificity protein phosphatase 4; alpha/beta	97.65
1zzw_A		149	Dual specificity protein phosphatase 10; MKP, PTP,	97.6
1yz4_A		160	DUSP15, dual specificity phosphatase-like 15 isofo	97.57
2r0b_A		154	Serine/threonine/tyrosine-interacting protein; str	97.57
1wrm_A		165	Dual specificity phosphatase 22; DSP, JNK, hydrola	97.57
2oud_A		177	Dual specificity protein phosphatase 10; A central	97.56
2esb_A		188	Dual specificity protein phosphatase 18; alpha/bet	97.55
3f81_A		183	Dual specificity protein phosphatase 3; hydrolase,	97.54
2hcm_A		164	Dual specificity protein phosphatase; structural g	97.52
2e0t_A		151	Dual specificity phosphatase 26; conserved hypothe	97.29
2y96_A		219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	97.27
2g6z_A		211	Dual specificity protein phosphatase 5; alpha/beta	97.25
3rgo_A		157	Protein-tyrosine phosphatase mitochondrial 1; phos	97.25
2img_A		151	Dual specificity protein phosphatase 23; DUSP23, V	97.23
2pq5_A		205	Dual specificity protein phosphatase 13; hydrolase	97.21
2wgp_A		190	Dual specificity protein phosphatase 14; MKP6, DUS	97.21
3cm3_A		176	Late protein H1, dual specificity protein phosphat	97.02
4erc_A		150	Dual specificity protein phosphatase 23; alpha bet	96.66
3nme_A		294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	96.66
2q05_A		195	Late protein H1, dual specificity protein phosphat	96.48
1fpz_A		212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	93.53
3s4o_A		167	Protein tyrosine phosphatase-like protein; structu	92.88
1xri_A		151	AT1G05000; structural genomics, protein structure	92.53
1rxd_A		159	Protein tyrosine phosphatase type IVA, member 1; p	91.53
2i6j_A		161	Ssoptp, sulfolobus solfataricus protein tyrosine p	90.83
1yn9_A		169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	89.12
1ohe_A		348	CDC14B, CDC14B2 phosphatase; protein phosphatase,	85.58
3rz2_A		189	Protein tyrosine phosphatase type IVA 1; tyrosine	84.47

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}	Back alignment and structure

Probab=97.91  E-value=8.6e-06  Score=70.99  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CcceEEccccccc-----ccCCccEEEecCCCccccccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcE
Q 012407          369 STNLAVGTSQHAA-----EERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTL  443 (464)
Q Consensus       369 ~t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~~~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~I  443 (464)
                      ..+|++|+...+.     ...++..||++..... ........|+++++....  .-++...++++++|+...+.++.+|
T Consensus         8 ~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~-~~~~~~~~~~~ipi~D~~--~~~~~~~~~~~~~fi~~~~~~~~~V   84 (144)
T 3s4e_A            8 KPWLLLGSQDAAHDLDTLKKNKVTHILNVAYGVE-NAFLSDFTYKSISILDLP--ETNILSYFPECFEFIEEAKRKDGVV   84 (144)
T ss_dssp             ETTEEEECHHHHTCHHHHHHTTCCEEEECSSSCC-CCCTTTSEEEECCCCCCT--TSCGGGGHHHHHHHHHHHHHTTCCE
T ss_pred             cCCEEECChhHhCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEeccCCC--CCchHHHHHHHHHHHHHHHHcCCeE
Confidence            4578998864321     2235789999975322 122345678999987653  3356788999999999999888999


Q ss_pred             EEEcCCCCcchhhheecccC
Q 012407          444 LICCHSGKDFYLPSYLEKLH  463 (464)
Q Consensus       444 LV~C~sGkDlSVGv~LalL~  463 (464)
                      ||+|..|.+.|..+++|.||
T Consensus        85 lVHC~~G~sRS~~~v~ayLm  104 (144)
T 3s4e_A           85 LVHSNAGVSRAAAIVIGFLM  104 (144)
T ss_dssp             EEECSSSSSHHHHHHHHHHH
T ss_pred             EEEcCCCCchHHHHHHHHHH
Confidence            99999999999999988875

PyMOL of 3s4e

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}	Back alignment and structure

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A	Back alignment and structure

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}	Back alignment and structure

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A	Back alignment and structure

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}	Back alignment and structure

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}	Back alignment and structure

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}	Back alignment and structure

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}	Back alignment and structure

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}	Back alignment and structure

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}	Back alignment and structure

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*	Back alignment and structure

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}	Back alignment and structure

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}	Back alignment and structure

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}	Back alignment and structure

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}	Back alignment and structure

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*	Back alignment and structure

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}	Back alignment and structure

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A	Back alignment and structure

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}	Back alignment and structure

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A	Back alignment and structure

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A	Back alignment and structure

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}	Back alignment and structure

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}	Back alignment and structure

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*	Back alignment and structure

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}	Back alignment and structure

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A	Back alignment and structure

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A	Back alignment and structure

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*	Back alignment and structure

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}	Back alignment and structure

>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A	Back alignment and structure

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		464
d1mkpa_		144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	98.08
d1m3ga_		145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	97.86
d1vhra_		178	VH1-related dual-specificity phosphatase, VHR {Hum	97.39
d1fpza_		176	Kinase associated phosphatase (kap) {Human (Homo s	93.82
d1ohea2		182	Proline directed phosphatase CDC14b2 {Human (Homo	92.48
d1rxda_		152	Protein tyrosine phosphatase type IVa {Human (Homo	86.67
d1xria_		151	Putative phosphatase At1g05000 {Thale cress (Arabi	85.9

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

Probab=98.08  E-value=6.8e-07  Score=76.35  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             cceEEccccccc-----ccCCccEEEecCCCcccc-ccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcE
Q 012407          370 TNLAVGTSQHAA-----EERNVDCILNCDQESITV-CLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTL  443 (464)
Q Consensus       370 t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~~-~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~I  443 (464)
                      ++|++|+...+.     ...++..||+|....... .......|+++++...  +..++.+.|+.+++|+...+.++.+|
T Consensus         9 p~lylG~~~~a~~~~~l~~~gI~~Iin~~~~~~~~~~~~~~~~y~~~~~~D~--~~~~i~~~~~~~~~~i~~~~~~~~~V   86 (144)
T d1mkpa_           9 PFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPISDH--WSQNLSQFFPEAISFIDEARGKNCGV   86 (144)
T ss_dssp             TTEEEECTTSCCCHHHHHHTTEEEEEECCSSCCCEEEEETTEEEEECCCCCS--TTCCSGGGHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEECChhHhcCHHHHHhCCCcEEEEccccCCccccCCCceEEEEEEEecC--CCCCHHHHHHHHHHHHHHhhhccceE
Confidence            478888764321     223568999997543221 2234457788888753  34457788999999999999999999


Q ss_pred             EEEcCCCCcchhhheecccC
Q 012407          444 LICCHSGKDFYLPSYLEKLH  463 (464)
Q Consensus       444 LV~C~sGkDlSVGv~LalL~  463 (464)
                      ||+|..|...|..+++|.||
T Consensus        87 lVHC~~G~~RS~~vv~aYLm  106 (144)
T d1mkpa_          87 LVHSLAGISRSVTVTVAYLM  106 (144)
T ss_dssp             EEECSSCSHHHHHHHHHHHH
T ss_pred             EEEecccccchHHHHHHHHH
Confidence            99999999999999999776

PyMOL of d1mkpa_

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}	Back information, alignment and structure

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}	Back information, alignment and structure

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure