Citrus Sinensis ID: 012409

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----

METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

cHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEccccEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEcccccEEEEcEEccccccccccccccccEEcccccccccEEEEEEEcccEEEEcccccEEEEccEEccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHccccccEEEEEEcccHHHHHHHHHHccccccccccccEEEccccHHHHHHHHcccccEEcccccc

ccHHHHHHHEHHHHHccccccccccEEEEEEEcccccccccEEccccEccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccHcccccEEEEEcccccccccEEEEEcccccEEEEEEcccccccccccccccccEcEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcHHHEcccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccccHHHHHHHHHccHHHccccccc

METTLQIFRTSyafrnrefpigkgkALQFIYgskqsktkgglnagtattnvyrsSTFKAEMKAMqsqccspdevifgpdfhQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKilkpnpelaDLIHKKcsglsnwyglipelfpnakylsgiMTGSMEHYLKKLRHYagdlplmsadygssegwiganvnpslppelatfavlpnigyfefipqrlgnlesqvlciepkpvgltevkvgEEYEIIVTNVAGLYRYRLGDVVkvmgfhnstpelKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVdftshvdlstdpghYVIFWEVSGEVNDEVLKECCNCldrsfvdagyvsarkvnaigpLELRVVLKGTFQQILDHYLGLGAalsqfktprcvgptnkTVLQILCNNigksyfstayg

METTLQIFRtsyafrnrefpigkGKALQFIYGSKqsktkgglnagtatTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVgltevkvgeeYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILcnnigksyfstayg

METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDeaaqllaeekqeVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

****LQIFRTSYAFRNREFPIGKGKALQFIYGS**************TTNVYR***F******MQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS****

*******FRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILD*Y********QF*TPRCVGPTNKTVLQILCNNIGKSYFS*A**

METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA*********CSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLG***SQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTA**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTxxxxxxxxxxxxxxxxxxxxxVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		464	2.2.26 [Sep-21-2011]
Q6I581		581	Probable indole-3-acetic	yes	no	1.0	0.798	0.701	0.0
Q9SKE2		575	Jasmonic acid-amido synth	yes	no	0.984	0.794	0.691	0.0
Q53P49		613	Probable indole-3-acetic	no	no	0.997	0.755	0.509	1e-147
Q5NAZ7		462	Probable indole-3-acetic	no	no	0.668	0.670	0.595	1e-103
O22190		595	Indole-3-acetic acid-amid	no	no	0.933	0.727	0.412	1e-100
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.922	0.716	0.410	4e-95
O82333		590	Probable indole-3-acetic	no	no	0.922	0.725	0.399	7e-95
P0C0M2		614	Probable indole-3-acetic	no	no	0.939	0.710	0.383	2e-92
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.935	0.717	0.391	4e-92
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.935	0.717	0.391	4e-92

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function desciption

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/469 (70%), Positives = 398/469 (84%), Gaps = 5/469 (1%)

Query: 1   METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 60
           +ETTLQI+RTSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  
Sbjct: 112 LETTLQIYRTSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEG 171

Query: 61  MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVW 120
           MK +QSQCCSPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VW
Sbjct: 172 MKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVW 231

Query: 121 EELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA 180
           E+LC DIR+GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNA
Sbjct: 232 EDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNA 291

Query: 181 KYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNI 240
           KY+ GIMTGSME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +
Sbjct: 292 KYVYGIMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQV 351

Query: 241 GYFEFIP--QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVV 295
           GYFEFIP  + +G      + +  IE  PVGLTEV+VG+ YE+++TN AGLYRYRLGDVV
Sbjct: 352 GYFEFIPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVV 411

Query: 296 KVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVD 355
           K+  FHNSTPEL+FICRR+L+L+INIDKNTEKDLQL+V+EA++ L  EK EV+DFTS V+
Sbjct: 412 KIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVE 471

Query: 356 LSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGT 415
            S+DPG YVIFWE+SG+ +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGT
Sbjct: 472 RSSDPGRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGT 531

Query: 416 FQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 464
           F++ILDH+L LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct: 532 FKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SKE2\|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2	Back alignment and function description

>sp\|Q53P49\|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1	Back alignment and function description

>sp\|Q5NAZ7\|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		464
224127866		576	GH3 family protein [Populus trichocarpa]	0.991	0.798	0.792	0.0
118486804		576	unknown [Populus trichocarpa]	0.987	0.795	0.787	0.0
224064181		576	GH3 family protein [Populus trichocarpa]	0.987	0.795	0.784	0.0
307136360		575	auxin-regulated protein [Cucumis melo su	0.991	0.8	0.790	0.0
449432068		572	PREDICTED: probable indole-3-acetic acid	0.984	0.798	0.784	0.0
383464620		576	auxin-responsive GH3 family protein [Hev	0.989	0.796	0.788	0.0
86212374		577	jasmonic acid-amino acid-conjugating enz	0.987	0.793	0.766	0.0
357512525		676	GH3 family protein [Medicago truncatula]	1.0	0.686	0.773	0.0
255586541		556	Indole-3-acetic acid-amido synthetase GH	0.991	0.827	0.771	0.0
356571222		587	PREDICTED: probable indole-3-acetic acid	0.995	0.787	0.763	0.0

>gi\|224127866\|ref\|XP_002320183.1\| GH3 family protein [Populus trichocarpa] gi\|222860956\|gb\|EEE98498.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/463 (79%), Positives = 417/463 (90%), Gaps = 3/463 (0%)

Query: 1   METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 60
           ME TLQI+RTS+AFRNREFP+ KGK+LQF+Y SK  KTKGGL AGTATTN++R+S +K  
Sbjct: 117 MENTLQIYRTSFAFRNREFPLEKGKSLQFVYSSKPWKTKGGLGAGTATTNIFRNSKYKNG 176

Query: 61  MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVW 120
           MKA+Q QCCSPDEVIFGPDFHQSLYCHLLCGL+FREEIQ VFSTFAHS++ AFRTFE VW
Sbjct: 177 MKAIQFQCCSPDEVIFGPDFHQSLYCHLLCGLLFREEIQFVFSTFAHSILLAFRTFEQVW 236

Query: 121 EELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA 180
           EELC+DIR+G LSSR+T PS+R AMSK+LKP+PELADLI+KKCSGLSNWYGLIPELFPNA
Sbjct: 237 EELCNDIRDGELSSRVTAPSVRIAMSKLLKPSPELADLIYKKCSGLSNWYGLIPELFPNA 296

Query: 181 KYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNI 240
           KY+ GIMTGSME YLKKLRHYAG+LPLMSADYGSSEGW+ ANVNP LPPELATFAVLPNI
Sbjct: 297 KYIYGIMTGSMEPYLKKLRHYAGELPLMSADYGSSEGWVAANVNPKLPPELATFAVLPNI 356

Query: 241 GYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGF 300
           GYFEFIP    N  ++ L +EPKPVGLTEVK+GE+YEIIVT  AGLYRYRLGDVV+VMGF
Sbjct: 357 GYFEFIPL---NNNAECLYMEPKPVGLTEVKIGEDYEIIVTTFAGLYRYRLGDVVRVMGF 413

Query: 301 HNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDP 360
           HN+TPELKF+CRRNL+L+INIDKNTEKDLQLSV+EA +LLAEEK E+VDF+S VD+STDP
Sbjct: 414 HNTTPELKFVCRRNLVLSINIDKNTEKDLQLSVEEAGKLLAEEKLEIVDFSSLVDVSTDP 473

Query: 361 GHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQIL 420
           GHYVIF E+SGE ++EVL+ECCNCLDRSFVD GYV +RKV AIGPLELRVV +GTFQ+IL
Sbjct: 474 GHYVIFLEISGEPSEEVLRECCNCLDRSFVDPGYVGSRKVKAIGPLELRVVWRGTFQKIL 533

Query: 421 DHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463
           +HYLGLG  +SQFKTPRCVGP N  V QILCNN+ K+YFSTA+
Sbjct: 534 EHYLGLGTVVSQFKTPRCVGPMNSKVQQILCNNVAKTYFSTAF 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|118486804\|gb\|ABK95237.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224064181\|ref\|XP_002301399.1\| GH3 family protein [Populus trichocarpa] gi\|222843125\|gb\|EEE80672.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|307136360\|gb\|ADN34174.1\| auxin-regulated protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|449432068\|ref\|XP_004133822.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi\|449477906\|ref\|XP_004155158.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|383464620\|gb\|AFH35030.1\| auxin-responsive GH3 family protein [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|86212374\|gb\|ABC87760.1\| jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata]	Back alignment and taxonomy information

>gi\|357512525\|ref\|XP_003626551.1\| GH3 family protein [Medicago truncatula] gi\|355501566\|gb\|AES82769.1\| GH3 family protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255586541\|ref\|XP_002533907.1\| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis] gi\|223526128\|gb\|EEF28472.1\| Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356571222\|ref\|XP_003553778.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		464
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	1.0	0.798	0.688	3.4e-180
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.989	0.776	0.536	1.7e-130
UNIPROTKB\|Q5NAZ7		462	GH3.3 "Probable indole-3-aceti	0.668	0.670	0.601	2.4e-99
UNIPROTKB\|Q53P49		613	GH3.12 "Probable indole-3-acet	0.719	0.544	0.518	1.2e-95
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.933	0.727	0.403	3.1e-90
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.939	0.712	0.390	6.9e-86
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.915	0.720	0.395	8.9e-86
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.922	0.716	0.401	1.4e-85
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.931	0.705	0.392	3e-85
TAIR\|locus:2201170		578	AT1G23160 [Arabidopsis thalian	0.922	0.740	0.408	3.8e-85

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 323/469 (68%), Positives = 390/469 (83%)

Query:     1 METTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 60
             +ETTLQI+RTSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  
Sbjct:   112 LETTLQIYRTSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEG 171

Query:    61 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVW 120
             MK +QSQCCSPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VW
Sbjct:   172 MKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVW 231

Query:   121 EELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA 180
             E+LC DIR+GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNA
Sbjct:   232 EDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNA 291

Query:   181 KYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNI 240
             KY+ GIMTGSME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +
Sbjct:   292 KYVYGIMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQV 351

Query:   241 GYFEFIP--QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVV 295
             GYFEFIP  + +G      + +  IE  PVGLTEV+VG+ YE+++TN AGLYRYRLGDVV
Sbjct:   352 GYFEFIPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVV 411

Query:   296 KVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVD 355
             K+  FHNSTPEL+FICRR+L+L+INIDKNTEKDLQL+V+            V+DFTS V+
Sbjct:   412 KIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVE 471

Query:   356 LSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGT 415
              S+DPG YVIFWE+SG+ +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGT
Sbjct:   472 RSSDPGRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGT 531

Query:   416 FQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 464
             F++ILDH+L LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct:   532 FKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580

GO:0009416 "response to light stimulus" evidence=IC

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6I581	GH35_ORYSJ	6, ., 3, ., 2, ., -	0.7014	1.0	0.7986	yes	no
Q9SKE2	JAR1_ARATH	6, ., 3, ., 2, ., -	0.6918	0.9849	0.7947	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4339756	OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed; May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity) (581 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		464
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	1e-157
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	1e-122
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	1e-122
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	1e-118

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  454 bits (1171), Expect = e-157
 Identities = 177/459 (38%), Positives = 248/459 (54%), Gaps = 59/459 (12%)

Query: 1   METTLQIFRTSYAF--RNREFPI----GKGKALQFIYGSKQSKTKGGLNAGTATTNVYR- 53
           +E    +   +      N   P     GK   L   +   + KT GG+ AG  +T +YR 
Sbjct: 104 LERFHFLGALAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRN 163

Query: 54  -SSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHA 112
               FK           SPDEVI   D  QS YC LLCGLI RE++  +    A  LV  
Sbjct: 164 LPFWFK--------LYTSPDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLL 214

Query: 113 FRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGL 172
            R  E  W+ELC DIR G L                 +PNPELADLI ++CS +      
Sbjct: 215 IRFLEKHWKELCTDIRTGTL-----------------RPNPELADLIEQECSKI------ 251

Query: 173 IPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELA 232
           I EL+PN KY+     GSME Y  KL    G LPL S  Y +SEG+ G N++P    E  
Sbjct: 252 IKELWPNLKYVFVWGGGSMEPYRPKLEKLLGGLPLYSETYAASEGFFGINLDP----EDV 307

Query: 233 TFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLG 292
           ++ ++PN G+FEFIP        +    +PK V L EV++G+ YE+++T  AGLYRYR+G
Sbjct: 308 SYTLMPNSGFFEFIP------VDEDGDEDPKIVDLVEVELGKNYELVITTFAGLYRYRIG 361

Query: 293 DVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTS 352
           DVV+V GF+N TP+ +F+ R   +L++  +K TE++L+ +V  A   L     E+V++TS
Sbjct: 362 DVVRVTGFYNYTPQFEFVGRTKHVLSLFGEKLTEEELEKAVKNA---LESTGLEIVEYTS 418

Query: 353 HVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSF-VDAGYVSARKVNAIGPLELRVV 411
             D ST+PGHYV +WE+  E   EVL+EC   LD +   ++ Y  AR+  ++GPLE+RVV
Sbjct: 419 APDTSTEPGHYVHYWEL--EFKPEVLEECARALDEALQENSDYRRAREKGSLGPLEIRVV 476

Query: 412 LKGTFQQILDHYLG-LGAALSQFKTPRCVGPTNKTVLQI 449
             GTF + +  + G LG ++ Q+K PR      +  L+I
Sbjct: 477 PPGTFYEWMKAFKGKLGGSIGQYKVPRLS--KEREYLEI 513

Length = 513

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		464
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.66
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.63
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.42
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.35
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	98.91
PRK00174		637	acetyl-CoA synthetase; Provisional	98.82
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.78
PTZ00237		647	acetyl-CoA synthetase; Provisional	98.77
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	98.75
PRK06060		705	acyl-CoA synthetase; Validated	98.75
PRK09274		552	peptide synthase; Provisional	98.75
PRK07514		504	malonyl-CoA synthase; Validated	98.72
PLN02574		560	4-coumarate--CoA ligase-like	98.69
PRK04319		570	acetyl-CoA synthetase; Provisional	98.69
PRK07529		632	AMP-binding domain protein; Validated	98.69
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.68
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	98.67
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	98.66
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	98.64
PRK07788		549	acyl-CoA synthetase; Validated	98.63
PRK07867		529	acyl-CoA synthetase; Validated	98.6
PRK09088		488	acyl-CoA synthetase; Validated	98.6
PRK05852		534	acyl-CoA synthetase; Validated	98.59
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	98.59
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	98.59
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	98.59
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	98.57
PRK13382		537	acyl-CoA synthetase; Provisional	98.57
PRK07638		487	acyl-CoA synthetase; Validated	98.56
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	98.55
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.54
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	98.53
PLN02654		666	acetate-CoA ligase	98.53
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	98.52
PRK06145		497	acyl-CoA synthetase; Validated	98.52
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	98.51
PLN03051		499	acyl-activating enzyme; Provisional	98.51
PRK06164		540	acyl-CoA synthetase; Validated	98.5
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.49
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	98.49
PRK06839		496	acyl-CoA synthetase; Validated	98.49
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.48
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	98.46
PLN02614		666	long-chain acyl-CoA synthetase	98.46
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	98.45
PLN02330		546	4-coumarate--CoA ligase-like 1	98.44
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	98.44
PRK12583		558	acyl-CoA synthetase; Provisional	98.44
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.43
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.42
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	98.42
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	98.42
PRK13383		516	acyl-CoA synthetase; Provisional	98.41
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.41
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	98.4
PLN02246		537	4-coumarate--CoA ligase	98.39
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	98.38
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	98.38
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	98.38
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.36
PRK08316		523	acyl-CoA synthetase; Validated	98.36
PRK13391		511	acyl-CoA synthetase; Provisional	98.36
PRK10946		536	entE enterobactin synthase subunit E; Provisional	98.36
PTZ00342		746	acyl-CoA synthetase; Provisional	98.35
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	98.35
PRK07470		528	acyl-CoA synthetase; Validated	98.33
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.33
PRK12467		3956	peptide synthase; Provisional	98.33
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	98.32
PLN02860		563	o-succinylbenzoate-CoA ligase	98.29
PRK07868		994	acyl-CoA synthetase; Validated	98.29
PRK13390		501	acyl-CoA synthetase; Provisional	98.28
PRK05850		578	acyl-CoA synthetase; Validated	98.27
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.27
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	98.27
PRK13388		540	acyl-CoA synthetase; Provisional	98.26
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.26
PLN02861		660	long-chain-fatty-acid-CoA ligase	98.26
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	98.25
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	98.24
PLN02736		651	long-chain acyl-CoA synthetase	98.24
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	98.23
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	98.22
PRK12316		5163	peptide synthase; Provisional	98.22
PRK08315		559	AMP-binding domain protein; Validated	98.22
PRK07787		471	acyl-CoA synthetase; Validated	98.21
PLN03052		728	acetate--CoA ligase; Provisional	98.2
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	98.2
PRK07798		533	acyl-CoA synthetase; Validated	98.19
PRK06188		524	acyl-CoA synthetase; Validated	98.16
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	98.14
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	98.13
PRK12467		3956	peptide synthase; Provisional	98.13
PRK05857		540	acyl-CoA synthetase; Validated	98.11
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.11
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.11
PLN03102		579	acyl-activating enzyme; Provisional	98.1
PRK08308		414	acyl-CoA synthetase; Validated	98.09
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	98.08
PRK12316		5163	peptide synthase; Provisional	98.08
PRK05691		4334	peptide synthase; Validated	98.07
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	98.07
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.05
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	98.05
PRK05691		4334	peptide synthase; Validated	98.03
PRK06178		567	acyl-CoA synthetase; Validated	98.01
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	97.99
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	97.97
PRK09192		579	acyl-CoA synthetase; Validated	97.96
PLN02430		660	long-chain-fatty-acid-CoA ligase	97.94
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	97.92
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	97.92
PRK08180		614	feruloyl-CoA synthase; Reviewed	97.9
PRK06018		542	putative acyl-CoA synthetase; Provisional	97.9
PTZ00216		700	acyl-CoA synthetase; Provisional	97.89
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	97.86
PRK08162		545	acyl-CoA synthetase; Validated	97.82
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	97.75
PRK12582		624	acyl-CoA synthetase; Provisional	97.69
PLN02479		567	acetate-CoA ligase	97.64
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	97.46
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	97.2
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	97.06
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.26
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	93.32
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	92.32
PRK09188		365	serine/threonine protein kinase; Provisional	88.12
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	81.16

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=9.4e-117  Score=942.07  Aligned_cols=456  Identities=39%  Similarity=0.735  Sum_probs=431.9

Q ss_pred             cchhhHHHhHHHHHhccCC-CCCCceEEEEeccCccccCCCceeeccccccccCchhhhhhhhhcccccCCcccccCCCh
Q 012409            2 ETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF   80 (464)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~T~~Gip~g~~s~~~~~s~~f~~~~~~~~~~~tsP~ev~~~~d~   80 (464)
                      +++.+++.+..+++++++| +..||+|||+|.+.+.+|++|||+|++|+++|+|.+|+.++.++.+.||+|.+|++|+|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~  207 (612)
T PLN02620        128 GRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDS  207 (612)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhhhhhhhhhcccccccceeCcHHhccCCCH
Confidence            4567789999999999999 999999999999999999999999999999999999999998899999999999999999


Q ss_pred             hhhHHHHHhhhcccCCceeeEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHH
Q 012409           81 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIH  160 (464)
Q Consensus        81 ~~~~Y~~Ll~aL~~~~~v~~i~~~f~s~l~~~~~~l~~~weel~~dI~~Gti~~~i~~~~~R~~l~~~l~p~p~~A~~L~  160 (464)
                      .|+|||||||||+++++|..++++|+++|++++++|+++|++||+||++|++++++++|++|++|+++|+|||++|+.|+
T Consensus       208 ~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls~~itd~~~R~av~~~L~p~pelA~~i~  287 (612)
T PLN02620        208 YQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTIDSQITDPSVREAVMKILKPDPKLADFVE  287 (612)
T ss_pred             HHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCHHHHHHHHhhcCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCccccCCCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCcccceeeecCCC
Q 012409          161 KKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNI  240 (464)
Q Consensus       161 ~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~~~~  240 (464)
                      ++|.++ +|+|++++|||||++|+||+||+|++|+++|++|+||+|+++.+|+||||+||+|++|.|+++.++|+|+|++
T Consensus       288 ~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~  366 (612)
T PLN02620        288 AECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTM  366 (612)
T ss_pred             HHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCc
Confidence            999996 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeCCCCCcccc----------cccCCCcccccccccCCCeEEEEecccCceeeeeeCCEEEEecccCCCcEEEEE
Q 012409          241 GYFEFIPQRLGNLESQ----------VLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFI  310 (464)
Q Consensus       241 ~ffEFip~~~~~~~~~----------~~~~~~~~l~l~eve~G~~YelVvTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~  310 (464)
                      +||||||+++  .+..          +..+++++|+++|||+|++|||||||++||||||+||||+|+||||++|+|+|+
T Consensus       367 ~yFEFip~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv  444 (612)
T PLN02620        367 AYFEFLPVHR--NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFI  444 (612)
T ss_pred             EEEEEeeccC--cccccccccccccccccccCccccHHHccCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEE
Confidence            9999999883  2110          012356799999999999999999999999999999999999999999999999


Q ss_pred             eecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEec--CC--CChHHHHHHHHHHH
Q 012409          311 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVS--GE--VNDEVLKECCNCLD  386 (464)
Q Consensus       311 gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~--~~--~~~~~l~~~~~~ld  386 (464)
                      ||.+.++|++|||++|++|+.||.+|..+|...+++|+||+++++.++.||||++|||+.  ++  ++++++++||..||
T Consensus       445 ~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El~~~~~~~~~~~~l~~cc~~lE  524 (612)
T PLN02620        445 CRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIE  524 (612)
T ss_pred             eecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999888777999999999999889999999999983  32  46678999999999


Q ss_pred             hhccCcchHhhhhcC-ccCCeEEEEeccchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccccccccccCC
Q 012409          387 RSFVDAGYVSARKVN-AIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY  463 (464)
Q Consensus       387 ~~l~n~~Y~~~R~~g-~l~pl~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v~~~~~s~~~  463 (464)
                      ++| |++|+.+|..+ +|||++|++|++|||+++|++++++|++.+|||+|||++  +.+++++|+++|+++|||+++
T Consensus       525 ~~L-n~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~Pr~v~--~~~~~~~l~~~v~~~~~s~~~  599 (612)
T PLN02620        525 ESL-NSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVK--FAPIIELLNSRVVSNYFSPKC  599 (612)
T ss_pred             HHh-CHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccCceEec--CHHHHHHHHhhhheeeccccC
Confidence            996 99999999886 599999999999999999999999999999999999999  999999999999999999975

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		464
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		0.0
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		2e-99
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		9e-91
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-87

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Iteration: 1

Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/464 (67%), Positives = 380/464 (81%), Gaps = 7/464 (1%) Query: 1 METTLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA 59 ME TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA Sbjct: 124 MENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKA 183 Query: 60 EMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELV 119 MK++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE V Sbjct: 184 GMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243 Query: 120 WEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPN 179 WEE+ DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPN Sbjct: 244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPN 303 Query: 180 AKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPN 239 AKY+ GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN Sbjct: 304 AKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPN 363 Query: 240 IGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMG 299 +GYFEF+P S+ E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+G Sbjct: 364 LGYFEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIG 417 Query: 300 FHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTD 359 F+N+TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ V+DF+S++D+STD Sbjct: 418 FYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTD 477 Query: 360 PGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQI 419 PGHY IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK IG LELRVV KGTF++I Sbjct: 478 PGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKI 537 Query: 420 LDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463 +H+LGLG++ QFK PRCV P+N VLQILC N+ SYFSTA+ Sbjct: 538 QEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		464
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-130
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-112
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  388 bits (997), Expect = e-130
 Identities = 319/464 (68%), Positives = 386/464 (83%), Gaps = 7/464 (1%)

Query: 1   METTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA 59
           ME TLQ+FRT++AFRNR+FP    GKALQFI+ SKQ  + GG+  GTATTNVYR+  FKA
Sbjct: 124 MENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKA 183

Query: 60  EMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELV 119
            MK++ S  CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE V
Sbjct: 184 GMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243

Query: 120 WEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPN 179
           WEE+  DI++GVLS+RITVPS+R AMSK+L PNPELA+ I  KC  LSNWYGLIP LFPN
Sbjct: 244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPN 303

Query: 180 AKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPN 239
           AKY+ GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN
Sbjct: 304 AKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPN 363

Query: 240 IGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMG 299
           +GYFEF+P             E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+G
Sbjct: 364 LGYFEFLPVSETGEG------EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIG 417

Query: 300 FHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTD 359
           F+N+TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ AA+ L+EEK EV+DF+S++D+STD
Sbjct: 418 FYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTD 477

Query: 360 PGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQI 419
           PGHY IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK   IG LELRVV KGTF++I
Sbjct: 478 PGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKI 537

Query: 420 LDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463
            +H+LGLG++  QFK PRCV P+N  VLQILC N+  SYFSTA+
Sbjct: 538 QEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		464
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.37
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.35
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.35
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.0
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.95
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	98.95
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.95
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.93
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	98.87
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	98.86
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.83
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.82
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.82
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	98.82
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.81
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	98.8
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.79
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.77
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	98.74
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	98.73
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.73
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	98.7
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	98.69
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.69
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	98.68
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.67
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	98.67
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.66
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	98.64
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.55
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.53
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.51
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.4
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.36
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	97.91
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.12
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	97.06
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	96.24

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=1.6e-111  Score=907.11  Aligned_cols=453  Identities=70%  Similarity=1.199  Sum_probs=420.4

Q ss_pred             hhhHHHhHHHHHhccCC-CC-CCceEEEEeccCccccCCCceeeccccccccCchhhhhhhhhcccccCCcccccCCChh
Q 012409            4 TLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFH   81 (464)
Q Consensus         4 ~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~T~~Gip~g~~s~~~~~s~~f~~~~~~~~~~~tsP~ev~~~~d~~   81 (464)
                      ..+.+.+..+++++ +| +. .||+|+|++.+.+.+|++|+|+|++|+.+++|.+|++.+..+...||+|.+++.|+|..
T Consensus       127 ~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~  205 (581)
T 4epl_A          127 TLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVH  205 (581)
T ss_dssp             HHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHH
T ss_pred             HHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHH
Confidence            34567778888887 77 88 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhhcccCCceeeEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHH
Q 012409           82 QSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHK  161 (464)
Q Consensus        82 ~~~Y~~Ll~aL~~~~~v~~i~~~f~s~l~~~~~~l~~~weel~~dI~~Gti~~~i~~~~~R~~l~~~l~p~p~~A~~L~~  161 (464)
                      |++||||||||+++++|.+|+++||++|++++++|+++|++||+||++|+++++++++++|++++++++|+|++|++|++
T Consensus       206 ~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~  285 (581)
T 4epl_A          206 QALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRT  285 (581)
T ss_dssp             HHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCccccCCCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCcccceeeecCCCc
Q 012409          162 KCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIG  241 (464)
Q Consensus       162 ~~~~~~~~~~~~~~lWP~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~~~~~  241 (464)
                      +|+++.+|+|++++|||||++|+||+||+|++|+++|++|+|++|+++.+|+||||+||+|++|.++++.++|+|+||++
T Consensus       286 ~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~  365 (581)
T 4epl_A          286 KCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLG  365 (581)
T ss_dssp             HHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSC
T ss_pred             HhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcE
Confidence            99873249999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             eeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccCceeeeeeCCEEEEecccCCCcEEEEEeecCceeeeee
Q 012409          242 YFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINI  321 (464)
Q Consensus       242 ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~G  321 (464)
                      ||||||++  +.+++    ++++|+++|||+|++|||||||++||||||+||+|+|+||||++|+|+|+||++++||++|
T Consensus       366 ffEFiP~~--~~~~~----~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~G  439 (581)
T 4epl_A          366 YFEFLPVS--ETGEG----EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINI  439 (581)
T ss_dssp             EEEEEEC-------------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSS
T ss_pred             EEEEEecc--cccCC----CCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeee
Confidence            99999988  34332    5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecCCCChHHHHHHHHHHHhhccCcchHhhhhcC
Q 012409          322 DKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVN  401 (464)
Q Consensus       322 Ekv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~~~~~~~l~~~~~~ld~~l~n~~Y~~~R~~g  401 (464)
                      ||++|++|++||.+|.++|++.|+.|.|||+.+|.++.||||++|||+.++++++.+++||..||++|.|++|+.+|..+
T Consensus       440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~  519 (581)
T 4epl_A          440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCK  519 (581)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcC
Confidence            99999999999999988888899999999999998888999999999987777788999999999996699999999999


Q ss_pred             ccCCeEEEEeccchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccccccccccCC
Q 012409          402 AIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY  463 (464)
Q Consensus       402 ~l~pl~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v~~~~~s~~~  463 (464)
                      +|+|++|++|++|+|++|+++++++|+++||||+|||+.+++++++++|+++|+++|||+++
T Consensus       520 ~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~  581 (581)
T 4epl_A          520 TIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF  581 (581)
T ss_dssp             SSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred             CCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence            99999999999999999999999999999999999999222999999999999999999975

PyMOL of 4epl

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		464
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	98.67
d1amua_		514	Phenylalanine activating domain of gramicidin synt	98.58
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.57
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.03
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.0
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	97.87
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	97.85

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.67  E-value=4.8e-07  Score=95.93  Aligned_cols=177  Identities=11%  Similarity=0.074  Sum_probs=102.8

Q ss_pred             CCCceeEEEeecC--hHHHHHHHHHHhC--CCCeecccccccccee-eecCCCCC---CcccceeeecCCCceeEEEeCC
Q 012409          178 PNAKYLSGIMTGS--MEHYLKKLRHYAG--DLPLMSADYGSSEGWI-GANVNPSL---PPELATFAVLPNIGYFEFIPQR  249 (464)
Q Consensus       178 P~l~~i~~~~tG~--~~~Y~~~l~~~~~--~~~~~~~~y~aSEg~~-gi~~~~~~---~~~~~~~~l~~~~~ffEFip~~  249 (464)
                      +.|++  ++.+|.  .....+.+.+.+|  +++++ ..||+||... .+...+..   .+...+ ..+|+. -...++.+
T Consensus       374 ~sLr~--i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G-~p~~g~-~v~ivd~~  448 (643)
T d1pg4a_         374 SSLRI--LGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSAT-RPFFGV-QPALVDNE  448 (643)
T ss_dssp             TTCCE--EEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCB-SBCTTC-CEEEECTT
T ss_pred             CceEE--EEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCccc-cccCCC-EEEEECCC
Confidence            46672  233443  2344566777664  48888 9999999632 22111111   011121 122332 12333322


Q ss_pred             CCCcccccccCCCcccccccccCCCeEEEEeccc-----Cceee----------------eeeCCEEEEecccCCCcEEE
Q 012409          250 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-----AGLYR----------------YRLGDVVKVMGFHNSTPELK  308 (464)
Q Consensus       250 ~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~-----~GLyR----------------Yr~GDvV~v~gf~~~~P~i~  308 (464)
                                  +     .+++.|+.+||+|+..     .|+|.                |++||+++++    ..-.+.
T Consensus       449 ------------g-----~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d----~dG~l~  507 (643)
T d1pg4a_         449 ------------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYYW  507 (643)
T ss_dssp             ------------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCEE
T ss_pred             ------------C-----CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEEC----CCceEE
Confidence                        2     2467899999999753     34442                8899999997    556899


Q ss_pred             EEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEe-ecCCCCCceEEEEEEecC--CCChHHHHHHHHHH
Q 012409          309 FICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSH-VDLSTDPGHYVIFWEVSG--EVNDEVLKECCNCL  385 (464)
Q Consensus       309 f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~-~~~~~~p~hY~~~~E~~~--~~~~~~l~~~~~~l  385 (464)
                      |+||.++++++.|++++..+|++++.+.      .  .|.+-.++ .+.......-+.||.+..  .++++..+++.+.+
T Consensus       508 i~GR~dd~ik~~G~ri~p~eIE~~l~~~------p--~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~  579 (643)
T d1pg4a_         508 ITGRVDDVLNVSGHRLGTAEIESALVAH------P--KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWV  579 (643)
T ss_dssp             EEEESSSEEEETTEEEEHHHHHHHHHHS------T--TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             EecccccEEEECCEEECHHHHHHHHHhC------C--CcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999743      1  24443332 221111113346777643  24444444454444


Q ss_pred             Hhh
Q 012409          386 DRS  388 (464)
Q Consensus       386 d~~  388 (464)
                      .+.
T Consensus       580 ~~~  582 (643)
T d1pg4a_         580 RKE  582 (643)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            443

PyMOL of d1pg4a_

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure