Citrus Sinensis ID: 012410
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 449449823 | 474 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.970 | 0.883 | 0.0 | |
| 449510979 | 477 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.964 | 0.877 | 0.0 | |
| 255557887 | 470 | conserved hypothetical protein [Ricinus | 0.987 | 0.974 | 0.880 | 0.0 | |
| 297820156 | 467 | hypothetical protein ARALYDRAFT_906825 [ | 0.980 | 0.974 | 0.851 | 0.0 | |
| 18410015 | 467 | transducin/WD40 domain-containing protei | 0.980 | 0.974 | 0.846 | 0.0 | |
| 224139426 | 473 | predicted protein [Populus trichocarpa] | 0.991 | 0.972 | 0.850 | 0.0 | |
| 297736651 | 464 | unnamed protein product [Vitis vinifera] | 0.974 | 0.974 | 0.844 | 0.0 | |
| 224069828 | 471 | predicted protein [Populus trichocarpa] | 0.982 | 0.968 | 0.847 | 0.0 | |
| 225448335 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.954 | 0.828 | 0.0 | |
| 147825153 | 481 | hypothetical protein VITISV_027347 [Viti | 0.991 | 0.956 | 0.828 | 0.0 |
| >gi|449449823|ref|XP_004142664.1| PREDICTED: uncharacterized protein LOC101207987 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/472 (88%), Positives = 439/472 (93%), Gaps = 12/472 (2%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD--ELGS 412
YITSDQDLIISYCKA+ +D WM G+AGSIN+S+ILTGKCLAKINA+N +PKV+D S
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGSINISNILTGKCLAKINASNGNPKVNDSSSSSS 422
Query: 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
SS G S+K+ SS +R+TV EALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 423 SSAGSSRKVCNSSQMRNTVAEALEDITALFYDEERNEIYTGNKNGLVHVWSN 474
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510979|ref|XP_004163828.1| PREDICTED: uncharacterized protein LOC101230142 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/475 (87%), Positives = 440/475 (92%), Gaps = 15/475 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE----- 409
YITSDQDLIISYCKA+ +D WM G+AGSIN+S+ILTGKCLAKINA+N +PKV+D+
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGSINISNILTGKCLAKINASNGNPKVNDDSSSSS 422
Query: 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
SSS G S+K+ SS +R+TV EALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 423 SSSSSAGSSRKVCNSSQMRNTVAEALEDITALFYDEERNEIYTGNKNGLVHVWSN 477
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557887|ref|XP_002519972.1| conserved hypothetical protein [Ricinus communis] gi|223540736|gb|EEF42296.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/470 (88%), Positives = 433/470 (92%), Gaps = 12/470 (2%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISA+PRPCSGRRVLAKKR RS+G +N+VKKLQRREI SK DRAF++SNAQERFRNM
Sbjct: 3 GRRISANPRPCSGRRVLAKKRQRSNGLMNTVKKLQRREISSKPDRAFTMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN+RICFL
Sbjct: 63 LKEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI+RGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIKRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414
YITSDQDLIISYCKAE E+QWMEGSAGSIN+S+ILTGKCLAKINA N PK + SSS
Sbjct: 363 YITSDQDLIISYCKAETEEQWMEGSAGSINISNILTGKCLAKINAGNGGPKGGECSSSSS 422
Query: 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
G SK+ S +RSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 IGCSKQ--SCSSMRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 470
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820156|ref|XP_002877961.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] gi|297323799|gb|EFH54220.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/470 (85%), Positives = 426/470 (90%), Gaps = 15/470 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRRV+AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRVVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ SS
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKEDESSSSSC 422
Query: 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
GK+ K R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 LGKNSKQR-----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18410015|ref|NP_566994.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown protein [Arabidopsis thaliana] gi|16226834|gb|AAL16275.1|AF428345_1 AT3g54190/F24B22_150 [Arabidopsis thaliana] gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis thaliana] gi|332645676|gb|AEE79197.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/470 (84%), Positives = 426/470 (90%), Gaps = 15/470 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ S+
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKDDESSSSNC 422
Query: 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
GK+ K R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 MGKNSKQR-----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139426|ref|XP_002323106.1| predicted protein [Populus trichocarpa] gi|222867736|gb|EEF04867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/476 (85%), Positives = 431/476 (90%), Gaps = 16/476 (3%)
Query: 1 MEGLGRRISAS-PRPCSGRRVLA-KKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQE 58
MEG GRRISA+ PRPCSGRR+LA KKR RSDGF+NSVKKLQRREI SK DR+FSI+NAQE
Sbjct: 2 MEGSGRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKSDRSFSITNAQE 61
Query: 59 RFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 118
RFRNM L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN
Sbjct: 62 RFRNMRLMEEYDTHDPKGHCSMVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 121
Query: 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178
+RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GF
Sbjct: 122 QRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFP 181
Query: 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---- 234
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD VQEIKI
Sbjct: 182 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDTDVQEIKISPGI 241
Query: 235 ------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 288
RSS +VPLKILSIEDGT+LK F HLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 242 MLLILNRSSGYVPLKILSIEDGTILKDFKHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 301
Query: 289 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 348
DVR+ + EVSRT+FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 302 DVRHTGIREVSRTDFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 361
Query: 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408
CNTNNIYITSDQDLIISYCKA+ +DQWMEG+AGSIN+S+ILTGKCLAKINATN SPK ++
Sbjct: 362 CNTNNIYITSDQDLIISYCKADSDDQWMEGNAGSINISNILTGKCLAKINATNGSPKDEE 421
Query: 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
S+ + K +L +RSTV ALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 CSSSTGSSKQSRL----MMRSTVAAALEDITALFYDEERNEIYTGNRHGLVHVWSN 473
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736651|emb|CBI25522.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/470 (84%), Positives = 425/470 (90%), Gaps = 18/470 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P +++E +
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFP-MENECSCTH 421
Query: 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
S+ IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 ASASR-------IRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 464
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069828|ref|XP_002326424.1| predicted protein [Populus trichocarpa] gi|222833617|gb|EEE72094.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/472 (84%), Positives = 427/472 (90%), Gaps = 16/472 (3%)
Query: 5 GRRISAS-PRPCSGRRVLA-KKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRN 62
GRRISA+ PRPCSGRR+LA KKR RSDGF+NSVKKLQRREI SK DR+FSI+NAQERFRN
Sbjct: 4 GRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKPDRSFSITNAQERFRN 63
Query: 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRIC 122
M L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAA+DI+FALAHSGVCAAFSR TN RIC
Sbjct: 64 MRLMEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAAQDIIFALAHSGVCAAFSRVTNHRIC 123
Query: 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182
FLN SPDEVI SLFYNKNNDS+ITVSVYASDNFSSLKCRST+IEYIRRG PD+GFALFES
Sbjct: 124 FLNASPDEVILSLFYNKNNDSVITVSVYASDNFSSLKCRSTRIEYIRRGNPDAGFALFES 183
Query: 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI-------- 234
ESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK VQEIKI
Sbjct: 184 ESLKWPGFVEFDDVNGKVLTYSAQDSMYKVFDLKNYTMLYSISDKDVQEIKISPGIMLLI 243
Query: 235 --RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 292
RSSS+VPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR+
Sbjct: 244 LNRSSSYVPLKILSIEDGTILKDFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRH 303
Query: 293 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTN 352
+ EVSRTEF+TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW PDCNTN
Sbjct: 304 TGIREVSRTEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWRPDCNTN 363
Query: 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412
N YITSDQDLIISYCKAE +DQWMEG+ GSIN+S+ILTGKCLAKINATN SPK DE
Sbjct: 364 NTYITSDQDLIISYCKAESDDQWMEGNGGSINISNILTGKCLAKINATNGSPK--DEECC 421
Query: 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
SSTG SK+ S ++STV EALEDIT+LFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 422 SSTGSSKQ--SCSLMKSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448335|ref|XP_002266566.1| PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/479 (82%), Positives = 425/479 (88%), Gaps = 19/479 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 63
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 64 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 123
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 124 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 183
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 184 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 243
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 244 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 303
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 304 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 363
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD------ 408
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P ++
Sbjct: 364 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECSCSSN 423
Query: 409 ---ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
S + + +S IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 424 FSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825153|emb|CAN75497.1| hypothetical protein VITISV_027347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/479 (82%), Positives = 425/479 (88%), Gaps = 19/479 (3%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD------ 408
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P ++
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECSCSSN 422
Query: 409 ---ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
S + + +S IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 FSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.980 | 0.974 | 0.842 | 1.9e-209 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.976 | 0.970 | 0.808 | 9.4e-201 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2025 (717.9 bits), Expect = 1.9e-209, P = 1.9e-209
Identities = 396/470 (84%), Positives = 421/470 (89%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---------- 234
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKI
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 235 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 295 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXXX 414
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK DDE
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPK-DDESSSSN 421
Query: 415 XXXXXXXXXXXYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 CMGKNSKQR----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
Identities = 381/471 (80%), Positives = 414/471 (87%)
Query: 5 GRRISASPRPCSG-RRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNM 63
GRRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREI S+ DRAFSIS AQERFRNM
Sbjct: 4 GRRIIANPRPCSGSRRVIAKKRSRPDGFVNSVKKLQRREISSRMDRAFSISTAQERFRNM 63
Query: 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF 123
LVE+YDTHDPKG+C LP L+KR+KVIEIVAARDIVFAL SGVCA+FSRETN+++CF
Sbjct: 64 RLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCF 123
Query: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183
LNVSPDEVIRSLFYNKNNDSLITVSVYASDN+SSLKCRST+IEYI RG+ D+GF LFESE
Sbjct: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESE 183
Query: 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI--------- 234
SLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDK+VQEIKI
Sbjct: 184 SLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIMLLIF 243
Query: 235 -RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 293
R++SHVPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA
Sbjct: 244 KRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
Query: 294 ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 353
EL+EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNN
Sbjct: 304 ELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNN 363
Query: 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXX 413
IYITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI A N PK +D
Sbjct: 364 IYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKIKANNGPPKEEDCSSSD 423
Query: 414 XXXXXXXXXXXXYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464
RS V EALEDIT+LFYDEERNEIYTGNRHGL+HVWSN
Sbjct: 424 LGNSSRR-------RSAVAEALEDITALFYDEERNEIYTGNRHGLLHVWSN 467
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 464 448 0.00091 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 617 (66 KB)
Total size of DFA: 284 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.75u 0.10s 37.85t Elapsed: 00:00:02
Total cpu time: 37.75u 0.10s 37.85t Elapsed: 00:00:02
Start: Fri May 10 11:33:12 2013 End: Fri May 10 11:33:14 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_502529.1 | annotation not avaliable (467 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| PTZ00421 | 493 | coronin; Provisional | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.86 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.86 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.83 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.82 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.75 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.74 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.74 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.65 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.65 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.64 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.64 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.63 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.61 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.6 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.6 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.59 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.55 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.51 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.5 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.48 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.48 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.44 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.44 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.44 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.41 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.41 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.4 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.38 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.36 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.31 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.27 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.23 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.23 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.22 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.21 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.21 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.18 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.14 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.02 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.99 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.97 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.96 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.91 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.89 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.89 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.87 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.87 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.83 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.81 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.78 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.78 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.74 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.74 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.74 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.73 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.63 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.56 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.49 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.48 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.46 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.36 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.34 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.29 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.28 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.24 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.23 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.17 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.05 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.0 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.0 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.99 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.99 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.96 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.95 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.93 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.75 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.72 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.65 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.64 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.64 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.62 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.46 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.36 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.35 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.27 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.23 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.19 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.16 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.99 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.85 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.83 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.81 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.78 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.74 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.45 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.34 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.32 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.31 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.28 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.26 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.23 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.19 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.04 | |
| PRK10115 | 686 | protease 2; Provisional | 95.98 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.98 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.94 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.89 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.88 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.8 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.78 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.76 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.59 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.58 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.47 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.44 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.18 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.16 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.13 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.1 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.84 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.52 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.37 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.02 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.58 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.47 | |
| PRK10115 | 686 | protease 2; Provisional | 93.31 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 93.29 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.27 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.92 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.82 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.76 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.65 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.47 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.39 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.33 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.3 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.2 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 92.05 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.97 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.7 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 91.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.23 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 90.15 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.02 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 89.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 89.66 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.51 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 89.3 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.18 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.05 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.34 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.33 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.19 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 87.87 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 87.71 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 87.13 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.95 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.43 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.51 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 85.25 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 83.68 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 83.06 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 82.75 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 81.53 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.45 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.31 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 80.6 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 80.37 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 80.18 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=393.14 Aligned_cols=310 Identities=13% Similarity=0.220 Sum_probs=279.9
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|...-|+ |..|++++-|-++++||..|..++.++ .+|.+||-+|+++|||+.||+ ++-+ .+|.||
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iAS----G~~d------g~I~lw 184 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIAS----GSKD------GSIRLW 184 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhc----cccC------CeEEEe
Confidence 456666666 889999999999999999999999999 669999999999999999999 5566 799999
Q ss_pred EeccCCCCC-cccceeeccccCceEEEEeC----CCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE-----
Q 012410 167 YIRRGKPDS-GFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI----- 234 (464)
Q Consensus 167 ~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~----pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf----- 234 (464)
|-.+|++.+ .++.|. +|+.+++|-+ |..+.|||+|-|++|+|||++-|+|++++. +..|.+|.+
T Consensus 185 dpktg~~~g~~l~gH~----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gl 260 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHK----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGL 260 (480)
T ss_pred cCCCCCcccccccCcc----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCce
Confidence 999999865 344443 7888888853 678899999999999999999999999887 567888887
Q ss_pred --eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE-----------------------------------ccCCCeEE
Q 012410 235 --RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI-----------------------------------EQFNEKLL 277 (464)
Q Consensus 235 --s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~-----------------------------------~~~~~~ll 277 (464)
|.+.|.|||+|+..+|.|.++|++|.|+|+.++.+ ++.+|.|+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 66899999999999999999999999999999887 12345688
Q ss_pred EEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEE
Q 012410 278 VKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
++|+|.|+-||+.... +++.-..||+..|..|.||||++++||+| |..|||||- +|+.+.+|.||-.. |..|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~-----VYqv 415 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA-----VYQV 415 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce-----eEEE
Confidence 8999999999997654 48889999999999999999999999999 999999999 79999999999988 8899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
++|.|.++|+|||+ |.|+|+||+.|.+....|.||.+
T Consensus 416 awsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D-------------------------------- 452 (480)
T KOG0271|consen 416 AWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD-------------------------------- 452 (480)
T ss_pred EeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc--------------------------------
Confidence 99999999999998 99999999999999999999997
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|.+||||+.++||+.|..+|||.
T Consensus 453 --EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 --EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --eEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=368.73 Aligned_cols=276 Identities=14% Similarity=0.209 Sum_probs=246.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+-..+ .+|.+.|-|+.|+|+|..|++ ++.| .|+||||+.+.-+..+.+. |..|+-+|+++ |||+
T Consensus 107 CssS~-~GH~e~Vl~~~fsp~g~~l~t----GsGD------~TvR~WD~~TeTp~~t~Kg----H~~WVlcvaws-PDgk 170 (480)
T KOG0271|consen 107 CSSSI-AGHGEAVLSVQFSPTGSRLVT----GSGD------TTVRLWDLDTETPLFTCKG----HKNWVLCVAWS-PDGK 170 (480)
T ss_pred ecccc-CCCCCcEEEEEecCCCceEEe----cCCC------ceEEeeccCCCCcceeecC----CccEEEEEEEC-CCcc
Confidence 44456 569999999999999999999 6677 8999999988776544444 44678899998 9999
Q ss_pred EEEEecCCCcEEEEeCCCCeEE-EEec--CCCEeEEEEeC-------------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 200 VLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKIRS-------------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~-------------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
.||||+-|++|++||-++|+++ .+|. .++|.+++|-| +.|++|+|||+.-|+|+.++.+|+..|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 9999999999999999999987 4665 57999999954 479999999999999999999988999
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc-----------CCC-----------------
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------YEN----------------- 315 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs-----------pdg----------------- 315 (464)
.+|.+--+ +.|.+||.|+|||+|+...|.|.++|+||..+|..++.| |-|
T Consensus 251 TCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 99998432 677789999999999999999999999999999999887 223
Q ss_pred --------cEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 316 --------QLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 316 --------qllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
..|+|+| |.|+-||+- .-++++.+.||+.- ||.|+||||+++|||+|. |.+||
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF-----------DkSVk 392 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF-----------DKSVK 392 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec-----------cccee
Confidence 4599999 999999997 47799999999997 999999999999999998 99999
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|||-.|||-+++|+||-. .|+.|++|.|.+.|+|||.|.|+++||
T Consensus 393 LW~g~tGk~lasfRGHv~----------------------------------~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVA----------------------------------AVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred eeeCCCcchhhhhhhccc----------------------------------eeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999999999986 899999999999999999999999998
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=374.69 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=251.1
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk 199 (464)
|...+.+.+..|-.++||+|++.|+| ++-+ +++++|..++++...++.+|+ ..++.+.|.|. ++.
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT----~sws------G~~kvW~~~~~~~~~~l~gH~----~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLAT----GSWS------GLVKVWSVPQCNLLQTLRGHT----SRVGAAVFHPVDSDL 232 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEE----eecC------CceeEeecCCcceeEEEeccc----cceeeEEEccCCCcc
Confidence 34556778888999999999999999 4555 799999999998877777666 44569999865 388
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
.|||||.|+|+|+|++.+-.+|..|. ...|-.|+|+|+ .|.|-+|||++|++.+.-.++|...|++++|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 99999999999999999988888776 467999999884 78999999999999999888988999999998
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcC
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 347 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~ 347 (464)
++ |..+++|+.|..-||||+++|.|+.+|.||...|.+|+|||+|..||||| |+|+||||++ -.++.++.+|.+-
T Consensus 313 ~D-GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-- 389 (459)
T KOG0272|consen 313 PD-GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-- 389 (459)
T ss_pred CC-CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch--
Confidence 84 44444578999999999999999999999999999999999999999999 9999999995 6789999999998
Q ss_pred CCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
|..|.|+| -|++|+++|. |+|+|||...+++|+++|.||.+
T Consensus 390 ---VS~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~------------------------ 431 (459)
T KOG0272|consen 390 ---VSQVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG------------------------ 431 (459)
T ss_pred ---hhheEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc------------------------
Confidence 78899999 7999999987 99999999999999999999997
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.||.++|||+.|+|+|.|.|+|||.
T Consensus 432 ----------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 ----------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------ceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=344.61 Aligned_cols=271 Identities=16% Similarity=0.264 Sum_probs=244.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|...|+.|-|.|+--+.++ +++| .++++||..+|++..+.++|+.. +..|+|+ .-|++||++|
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~----as~d------~tikv~D~~tg~~e~~LrGHt~s----v~di~~~-a~Gk~l~tcS 169 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVS----ASED------ATIKVFDTETGELERSLRGHTDS----VFDISFD-ASGKYLATCS 169 (406)
T ss_pred hccccceeeeeeccCceEEEE----ecCC------ceEEEEEccchhhhhhhhccccc----eeEEEEe-cCccEEEecC
Confidence 348888999999997665555 6677 89999999999998888888864 3389997 7999999999
Q ss_pred CCCcEEEEeCCC-CeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 206 QDSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 206 ~D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
.|-+++|||..+ ++|++++. .+.|.+|+|-| +.|.|||.|++.||.|+++|.+|..+++.|+-.- + +
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-D-G 247 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-D-G 247 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-C-e
Confidence 999999999987 88888776 57899999955 6889999999999999999998878999998655 3 5
Q ss_pred eEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC---------------CcEEEEEe-CCeEEEEeC-CCceE
Q 012410 275 KLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE---------------NQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 275 ~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd---------------gqllaS~s-D~TIklWd~-~Ge~l 336 (464)
.|++ ++.|.||++|=+.+++|...+++|.+.|..++|-|+ ||.+.++| |+|||+||+ +|.||
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 5555 679999999999999999999999999999988653 57999999 999999999 79999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-||.||.+| |..++|+|-|+||+|+.+ |+|+|+||+.+++|++++.+|+.
T Consensus 328 ~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h-------------- 377 (406)
T KOG0295|consen 328 FTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH-------------- 377 (406)
T ss_pred EEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc--------------
Confidence 999999999 899999999999999987 99999999999999999999996
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|+++.|.-+-..++|||-|+++++|.
T Consensus 378 --------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 --------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.50 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=234.4
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
|+....++ +++|++++-+|++++|++.+.+.+++| .+|.+.|-.+.|+|. +..||| ++.| ++++|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat----~s~D------gtvkl 245 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLAT----ASAD------GTVKL 245 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceee----eccC------Cceee
Confidence 44444444 999999999999999999999999999 559999999999998 567888 4556 79999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--EecCCCEeEEEEeC-------
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIKIRS------- 236 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--tl~~~~V~~Vafs~------- 236 (464)
|.+.+-.+++.+.+|.. -+..|+|. |+|++|+++|.|.|.||||+.|++.+. ..+...|.+|+|.|
T Consensus 246 w~~~~e~~l~~l~gH~~----RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLA----RVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred eccCCCcchhhhhcchh----hheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 99887777665555553 34489996 999999999999999999999999764 55578999999976
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-C
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-E 314 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-d 314 (464)
+.|..-+|||+.||.|++.|.+|...|.+|+|+|. |-.|++||.|+|+||||++...++.+..+|.+-|+.|.|+| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 37788999999999999999999999999999993 33444478999999999999999999999999999999998 8
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|++|+|+| |+|+|||.- ++.|+++|.||... |-++.+||||+.|+|++. |.|||||.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~-----------DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSF-----------DRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEecc-----------Cceeeecc
Confidence 99999999 999999998 69999999999998 899999999999999998 99999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=314.38 Aligned_cols=285 Identities=14% Similarity=0.178 Sum_probs=232.0
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-----cCCCCCcccceeeccccCceEEEEe
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-----RGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-----~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
..-++ .+|.++|.+++..+.+..++. | ++-| .++-+|++. .|.+...+.+|+.. +..|+.+
T Consensus 7 l~~tl-~gh~d~Vt~la~~~~~~~~l~-s--asrD------k~ii~W~L~~dd~~~G~~~r~~~GHsH~----v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTL-EGHTDWVTALAIKIKNSDILV-S--ASRD------KTIIVWKLTSDDIKYGVPVRRLTGHSHF----VSDVVLS 72 (315)
T ss_pred eeeee-cCCCceEEEEEeecCCCceEE-E--cccc------eEEEEEEeccCccccCceeeeeeccceE----ecceEEc
Confidence 44467 559999999999998544433 2 4556 799999874 44444344444321 3368887
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC--Ccc
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL--LHR 262 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~--~~~ 262 (464)
+||++..|+|.|+++|+||+++|+....|. +..|.+|+|+| +.|.||||||+- |+|..|+... ..+
T Consensus 73 -~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 73 -SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred -cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence 899999999999999999999998876554 67899999987 589999999998 7888888733 578
Q ss_pred eeeEEEEccC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 263 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 263 ~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
|..|.|+|.. +-.|+++|.|+|+|+||+++-++.+.+.||+..+..+++||||.+.+||+ |+.+-|||+ +|+++.+|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 8999999964 45677789999999999999999999999999999999999999999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
+.... |++++|+|+--.|+-+- +.+|||||+.++.|+.+|+---..|..+..
T Consensus 231 ~a~~~------v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~---------- 282 (315)
T KOG0279|consen 231 EAFDI------VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGIGPSSKAG---------- 282 (315)
T ss_pred cCCCe------EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhccccccccccccC----------
Confidence 76543 89999999988887764 677999999999999988654321111110
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+ .-.++|||+||++|++|-.|+.||+|.
T Consensus 283 -----------~~----~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 283 -----------DP----ICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred -----------Cc----EEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 00 567899999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=281.28 Aligned_cols=274 Identities=16% Similarity=0.287 Sum_probs=237.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
+.+. +|...|.++.|+|+|+.|++++ .+ +.+.+|++..++....+..+. ..+..+.|+ |+++.|
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~----~~------g~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~l 66 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGS----GD------GTIKVWDLETGELLRTLKGHT----GPVRDVAAS-ADGTYL 66 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEee----cC------cEEEEEEeeCCCcEEEEecCC----cceeEEEEC-CCCCEE
Confidence 4564 5888999999999999999844 35 699999998887543333222 223479997 899999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
++++.|+++++||+.+++.+..+. ...|.+++|+|+ .++.|++||+.+++++..+..+...+..++|.|.
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence 999999999999999988887766 347999999873 3899999999999999999865567899999985
Q ss_pred CCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 272 FNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 272 ~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
+.+++ ++.|+.|++||+++++++..+..|...+.++.|+|+++.+++++ |+.|++||+ .++++..+.+|...
T Consensus 147 --~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--- 221 (289)
T cd00200 147 --GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG--- 221 (289)
T ss_pred --CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc---
Confidence 44555 55699999999999999999999988999999999999999988 999999999 59999999999886
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++|+|++.++++++. |++|++||+.+++++..+.+|..
T Consensus 222 --i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~-------------------------- 262 (289)
T cd00200 222 --VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN-------------------------- 262 (289)
T ss_pred --eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC--------------------------
Confidence 889999999999999876 99999999999999999999876
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+++|+|+++.|++++.|+.|++|+
T Consensus 263 --------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 --------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=342.26 Aligned_cols=308 Identities=16% Similarity=0.179 Sum_probs=242.8
Q ss_pred CCeEEeeecccccEeeEeec----CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC---cccc
Q 012410 107 SGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS---GFAL 179 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~----~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~---~~~l 179 (464)
+|.|++|+..+-+....++. .|.+.|.++.|+|+|+++|+ ++.| ++++||++....... ..+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~lat----gg~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFAT----AGVN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEE----EeCC------CEEEEEECCcccccccccccce
Confidence 67899998665554444432 38899999999999999999 4556 799999975422111 1111
Q ss_pred eeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcC
Q 012410 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIE 248 (464)
Q Consensus 180 ~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~ 248 (464)
.+......+.+++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| +.|++|+|||+.
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 1111112234799986678999999999999999999999988775 56799999975 368999999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+|+++.++.++ ..+.+++|.+.++..+++|+.|++|++||+++++ .+.++.+|...|.++.|+ ++..|+|++ |++|
T Consensus 607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 99999999864 5789999987667778889999999999999876 577889999999999997 788899999 9999
Q ss_pred EEEeCC-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 327 AVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 327 klWd~~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
+|||++ ++++++|.||... ++.++|+|+|++||+|+. |++|+||+..+++.+..+.-
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEEEec
Confidence 999983 3689999999987 789999999999999987 99999999877765544422
Q ss_pred CCC-CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNC-SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
... ...+. .....-+.|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 749 ~~~~~~~~~----------------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGL----------------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCccccc----------------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 111 00000 00112237999999999999999999999999985
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=320.77 Aligned_cols=279 Identities=15% Similarity=0.244 Sum_probs=241.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC--CCCcccceeeccccCceEEEEeCCCCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+.+...+..-|.++.|+++|..|++++ -+ +++++|+...++ +..... ++...+..++|+ |||+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~----~~------~~i~~~~~~~~~~~~~~~l~----~h~~~v~~~~fs-~d~~ 216 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAAS----SD------GLIRIWKLEGIKSNLLRELS----GHTRGVSDVAFS-PDGS 216 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEcc----CC------CcEEEeecccccchhhcccc----ccccceeeeEEC-CCCc
Confidence 344344466789999999999988843 44 699999997777 433222 233445589998 8999
Q ss_pred EEEEecCCCcEEEEeC-CCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDL-KNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl-~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+|++|+.|++|||||+ ..+.+++++. ...|.+++|+| +.|.+|+|||+++|+|+.+|.+|...+..++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 9999999999999999 6779999997 46799999987 58999999999999999999988899999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCc--eEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~--v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.+ ++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|.+|+++. |+++++||+ .++++.++.+|
T Consensus 297 ~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 297 SP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 88 46778888999999999999999 78888888665 89999999999999999 999999999 59999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC-CCCCCcccccCCCCCCccccc
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh-~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.+-+ .| +.+..++++|++|+||+. |++|.+||+.++.-+..+.+| ..
T Consensus 376 ~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~~------------------- 423 (456)
T KOG0266|consen 376 SNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSKA------------------- 423 (456)
T ss_pred CCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCCC-------------------
Confidence 9863 23 566777999999999997 999999999999999999999 54
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEee--CCCcEEecc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWS 463 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVrlWd 463 (464)
.|..++++|..+++++++ .|+.|++|.
T Consensus 424 ---------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 424 ---------------AVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ---------------ceeccccCCCcCeeeecCcCCCceEEEec
Confidence 788999999999999999 899999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=294.83 Aligned_cols=278 Identities=12% Similarity=0.177 Sum_probs=244.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
.+| .+|...|.++-|++|.+.|+++| .| ..+-|||--+..-...+++-. .|+-.+||+ |.|+.+
T Consensus 49 r~L-kGH~~Ki~~~~ws~Dsr~ivSaS----qD------GklIvWDs~TtnK~haipl~s----~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTL-KGHLNKIYAMDWSTDSRRIVSAS----QD------GKLIVWDSFTTNKVHAIPLPS----SWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEe-cccccceeeeEecCCcCeEEeec----cC------CeEEEEEcccccceeEEecCc----eeEEEEEEC-CCCCeE
Confidence 577 55999999999999999999955 44 577799987776554444433 577799997 999999
Q ss_pred EEecCCCcEEEEeCCCC--e----EEEEec--CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 202 TYSAQDSIYKVFDLKNY--T----MLYSIS--DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg--~----~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
|.|+-|...-|+++++- + .-+.|. +..+.++.|-+ +.|.|.-+||||+|+.++.|.+|..-|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 99999999999999965 1 223454 45688888844 699999999999999999999998999999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~ 344 (464)
+++|-++..+++|+-|++.+|||++.+.|.+++.||..-|.+|.|-|+|.-|+||| |+|.|++|++ .+.+..|+.. +
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~ 271 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-S 271 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-c
Confidence 99996567788899999999999999999999999999999999999999999999 9999999995 8888888843 3
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
- .|.|++|+||-.|++|.+|.. |.++++||...|+-+.+|.||.+
T Consensus 272 ~--~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN---------------------- 316 (343)
T KOG0286|consen 272 I--ICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN---------------------- 316 (343)
T ss_pred c--cCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC----------------------
Confidence 2 355999999999999999986 99999999999999999999998
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|..+|||.-++|||-|.++|||.
T Consensus 317 ------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 ------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.93 Aligned_cols=287 Identities=13% Similarity=0.137 Sum_probs=243.9
Q ss_pred eeeeecCCCCCcccchhhhccccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEE
Q 012410 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSL 144 (464)
Q Consensus 67 ~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l 144 (464)
.+++-+=|+-++.+-|.. -+++|..+.+- --+++++++++++++||..||++...|. +|.+-|.+|.|.--|++|
T Consensus 89 ~~~~~wipRp~l~~~l~g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 89 RTPALWIPRPNLVQKLAG--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYL 165 (406)
T ss_pred cChhhcCCCCCchhhhhc--cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEE
Confidence 344556677777777776 66777777776 5567777799999999999999999995 577779999999999999
Q ss_pred EEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE
Q 012410 145 ITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 223 (464)
Q Consensus 145 ~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t 223 (464)
|+.| .| -++++||..+ -++......++.. +.+|+|= |.|.+|+|++.|.|||.|++.||-|+|+
T Consensus 166 ~tcS----sD------l~~~LWd~~~~~~c~ks~~gh~h~----vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 166 ATCS----SD------LSAKLWDFDTFFRCIKSLIGHEHG----VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred EecC----Cc------cchhheeHHHHHHHHHHhcCcccc----eeeEEEE-ecCCeeeecccccceeEEecccceeEEe
Confidence 9944 55 2488999754 3333322333321 2389997 8999999999999999999999999999
Q ss_pred ec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-------------C-CeEEEE
Q 012410 224 IS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------N-EKLLVK 279 (464)
Q Consensus 224 l~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-------------~-~~lla~ 279 (464)
+. .++|..|+.+ .+.|.+|++|-+++++|...|+.|.|.+.+|+|.|.. + ..+.++
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 98 4689999984 4689999999999999999999888999999997741 1 245558
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
|.|+|||+||+.+|.|+-+|.||.++|+.++|+|.|++|+|.. |+|+++||+ +++|.++++.|... |.++.|.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh 385 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFH 385 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecC
Confidence 8999999999999999999999999999999999999999999 999999999 69999999999998 8999999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
-+-.++++|+- |+++|+|.
T Consensus 386 ~~~p~VvTGsV-----------dqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSV-----------DQTVKVWE 404 (406)
T ss_pred CCCceEEeccc-----------cceeeeee
Confidence 99999999997 99999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=324.62 Aligned_cols=223 Identities=16% Similarity=0.241 Sum_probs=205.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe--------EE-----------------------EEe--cCCCEeEEEEeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------ML-----------------------YSI--SDKHVQEIKIRS 236 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--------~l-----------------------~tl--~~~~V~~Vafs~ 236 (464)
+.+|| +|+..||.|=.|..|++|.+..-+ -+ +++ +.+.|.++.|+|
T Consensus 383 ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 383 CAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 79998 799999999999999999987421 11 112 246799999988
Q ss_pred --------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEE
Q 012410 237 --------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 237 --------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
++|.+|+||++.|-.|+....+|..+||.|+|+|. |=++|++|.|+|.+||....-+.++++.||..-|.+
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c 540 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC 540 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccce
Confidence 58999999999999999999999999999999984 556677899999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 309 FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 309 v~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+.|.|+..++|||| |+|||+||+ +|.+++.|.||... |.+|+|||+|.+||||+. ||.|+||
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iW 604 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP-----VTALAFSPCGRYLASGDE-----------DGLIKIW 604 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc-----eEEEEEcCCCceEeeccc-----------CCcEEEE
Confidence 99999999999999 999999999 79999999999998 899999999999999987 9999999
Q ss_pred eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 387 SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 387 di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+.+|+.+.++.+|++ .|.||.||.||..||+|+.|.+|+|||.
T Consensus 605 Dl~~~~~v~~l~~Ht~----------------------------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTG----------------------------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EcCCCcchhhhhcccC----------------------------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999987 8999999999999999999999999984
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=313.48 Aligned_cols=228 Identities=19% Similarity=0.344 Sum_probs=207.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC--------CceeEEEEEc-CCCcEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS--------SHVPLKILSI-EDGTVLKVF 256 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi-~tG~~l~tl 256 (464)
.+.|+ |||+.|++++.|+++++|++.+++ +++++. ...|.+++|+|+ .|++|||||+ +.|.++++|
T Consensus 164 ~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 69998 899999999999999999998888 777774 568999999884 7999999999 677999999
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
.+|...+.+++|+|+ +..+++|+.|++|||||+++|+|++++.+|.+.|.+++|++||++|++++ |++|+|||+ +|+
T Consensus 243 ~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred cCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 988889999999996 46777789999999999999999999999999999999999999999999 999999999 688
Q ss_pred --eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 335 --LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 335 --~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
|+.++.+|....+ ++++.|+|+|++|++++. |+++++||+..++|+.++.+|.+.+
T Consensus 322 ~~~~~~~~~~~~~~~---~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~~-------- 379 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAP---VTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNLV-------- 379 (456)
T ss_pred eeeeecccCCCCCCc---eeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCcc--------
Confidence 7899999987532 899999999999999987 9999999999999999999998610
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+.+..++++|+.|+||+.|+.|++||.
T Consensus 380 -----------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 380 -----------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred -----------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 15667778999999999999999999983
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=319.16 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=243.7
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
-.-++++..++.+.+||..+.+....+-++|++..--=|..|+-+.||+|+ -+ ..+|+.++++-.|. -.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT--Ns--------~~lr~y~~~~~~c~-ii 361 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT--NS--------PELRLYTLPTSYCQ-II 361 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe--CC--------CceEEEecCCCceE-EE
Confidence 344456667778999999999999998788888655567788899999966 22 35677777666552 23
Q ss_pred cceeeccccCceEEE-EeCCCCcEEEEecCCCcEEEEeCCCCeEE------EEecCCCEeEEEEe---------CCCcee
Q 012410 178 ALFESESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTML------YSISDKHVQEIKIR---------SSSHVP 241 (464)
Q Consensus 178 ~l~~~~~~~~~~~Va-Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l------~tl~~~~V~~Vafs---------~s~d~t 241 (464)
++|+.-++ ++. |+ .|-.|||||-|++++||.++++.+. .+.+.+.|-.|+++ .+.|.|
T Consensus 362 ~GH~e~vl----SL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 362 PGHTEAVL----SLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred eCchhhee----eeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence 33432222 555 53 7899999999999999999665543 23446789999995 379999
Q ss_pred EEEEEcCCCcE---EEEE------eeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 242 LKILSIEDGTV---LKVF------YHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 242 IklWdi~tG~~---l~tl------~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
||+|++...+. ...| .-|...+.+|+.+|. ++|++ +|.|+|.|||++.+++++.+|.||.-.||+|.|
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 99999964111 1122 124467799999883 55555 889999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|..|++||+| |.|||||.+ +..|++||+||... |--+.|-.+|+.|+|++. ||-|||||+.
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a-----------dGliKlWnik 577 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA-----------DGLIKLWNIK 577 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-----------CCcEEEEecc
Confidence 99999999999 999999999 79999999999987 778999999999999986 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++|+++|.+|++ .||+++-+|++..++||+.||.|-+|.
T Consensus 578 t~eC~~tlD~H~D----------------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 578 TNECEMTLDAHND----------------------------------RVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred chhhhhhhhhccc----------------------------------eeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999998 999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=312.15 Aligned_cols=304 Identities=11% Similarity=0.159 Sum_probs=250.5
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-C
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-D 174 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~ 174 (464)
..|-++|++..+|.+++||+..+.+++.| .+|..+|+++.|+|+=.....+| +.+| .++++|++.++.. .
T Consensus 115 ~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~s--g~~D------~~v~vwnl~~~~tcl 185 (775)
T KOG0319|consen 115 PTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLAS--GATD------GTVRVWNLNDKRTCL 185 (775)
T ss_pred CCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheee--cCCC------ceEEEEEcccCchHH
Confidence 33999999999999999999999999999 56999999999999876655533 7777 8999999987665 2
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEE-------------------
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKI------------------- 234 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vaf------------------- 234 (464)
.+.. .|..++.+++|+ +|+..+.|++.|++|-|||+.+++++++++- +.+-++++
T Consensus 186 ~~~~----~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 186 HTMI----LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred HHHH----hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 2222 245566699998 8999999999999999999999998877751 11222221
Q ss_pred ------------------e-------------------------------------------------------------
Q 012410 235 ------------------R------------------------------------------------------------- 235 (464)
Q Consensus 235 ------------------s------------------------------------------------------------- 235 (464)
+
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0
Q ss_pred -----C-------------------------------------CCceeEEEEEcCCCcEE----EEEeeCCcceeeEEEE
Q 012410 236 -----S-------------------------------------SSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFI 269 (464)
Q Consensus 236 -----~-------------------------------------s~d~tIklWdi~tG~~l----~tl~~~~~~~~~V~F~ 269 (464)
| +.|++++||-++++.+. +..++|.+.+-.|+++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 0 14667888876555433 2334666777888886
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCc---------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~---------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.-....++++|.|.|||+|++...+ |.-+-..|...|.+|+.+|+.++|||+| |+|.|||++ +++++.+
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 5434567778999999999987632 2224567889999999999999999999 999999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
|.||.-. ||+|.|+|..++||++|. |+|||||.|.+..|++||.||++
T Consensus 501 LsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~---------------- 548 (775)
T KOG0319|consen 501 LSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS---------------- 548 (775)
T ss_pred eeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc----------------
Confidence 9999987 999999999999999886 99999999999999999999998
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.-+.|--+|+.|+|++.||.||||+
T Consensus 549 ------------------aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 549 ------------------AVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ------------------eeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 899999999999999999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=309.10 Aligned_cols=263 Identities=16% Similarity=0.237 Sum_probs=225.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.++..+-+..+. +..+++ ++++ +++++|+..+|+...+ +.+|+. -+..++|. .-+.+|.|||
T Consensus 206 ~~~~~~~~~q~~--~~~~~~----~s~~------~tl~~~~~~~~~~i~~~l~GH~g----~V~~l~~~-~~~~~lvsgS 268 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKS----GSDD------STLHLWDLNNGYLILTRLVGHFG----GVWGLAFP-SGGDKLVSGS 268 (537)
T ss_pred cCcchhhhheee--cCeEEe----cCCC------ceeEEeecccceEEEeeccCCCC----CceeEEEe-cCCCEEEEEe
Confidence 356778888888 345666 5677 8999999999998655 555543 23389995 3578999999
Q ss_pred CCCcEEEEeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEE
Q 012410 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL 277 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ll 277 (464)
.|.|+||||+.+|+|.+++. ...|+.+.+- .+.|.|||+|++++|++|+++.+|...|++|... +..++
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lv 345 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLV 345 (537)
T ss_pred cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEE
Confidence 99999999999999999987 4568888773 3699999999999999999999777899999985 37888
Q ss_pred EEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC-ceEEEeccCCCCcCCCCeeEE
Q 012410 278 VKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG-ELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G-e~l~tl~gH~~~~~~~~v~sv 354 (464)
+|+.|++|++||+.+++|++++.||+.+|.+++|.+. +.+.||+ |++||+||+ ++ +|+.+|.+|..- |+.+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-----v~~l 419 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-----VSSL 419 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc-----cccc
Confidence 8999999999999999999999999999999988777 8899999 999999999 57 799999999997 5444
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
...+++|+|++. |++||+||+.+|+|++++++ |..
T Consensus 420 --~~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~~------------------------------- 455 (537)
T KOG0274|consen 420 --LLRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHVG------------------------------- 455 (537)
T ss_pred --ccccceeEeccc-----------cccEEEeecccCceeeeeccCCcc-------------------------------
Confidence 446899999986 99999999999999999999 544
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++++. -..+++++.|+++++||.
T Consensus 456 ---~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 456 ---GVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ---cEEEeecC--cceEEEEecCCeeEEEec
Confidence 78888886 688999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=273.84 Aligned_cols=271 Identities=11% Similarity=0.179 Sum_probs=228.2
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
=+|+++++|.+|++|+..+|++..++ ..++.-|..+-..|++..||++ .. ..|||+||.+++++ +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpdk~~LAaa----~~-------qhvRlyD~~S~np~---P 75 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPDKKDLAAA----GN-------QHVRLYDLNSNNPN---P 75 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCCcchhhhc----cC-------CeeEEEEccCCCCC---c
Confidence 47899999999999999999999999 6688889999999999999993 33 68999999999885 3
Q ss_pred ceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--------CCceeEEEEEcC
Q 012410 179 LFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS--------SSHVPLKILSIE 248 (464)
Q Consensus 179 l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~--------s~d~tIklWdi~ 248 (464)
..+.+ +.+-+.+|.|- -||+.+.+||.|+|+||||+..-.|.+.+. ...|.+|.+.| +.++-|++||+.
T Consensus 76 v~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred eeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 33322 22445599996 899999999999999999999988877666 57899999987 466789999998
Q ss_pred CCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc------EEEEcccCCCceEEEEEcCCCcEEEEE
Q 012410 249 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 249 tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~------~l~~l~gh~~~v~sv~FspdgqllaS~ 321 (464)
+..|-..|- ...-.+.++...| ++.+++++-.-|+..+|++-+++ .++.++.|+..+..+.||||+++||++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred CCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 877766654 3335568888777 44555555688999999998865 455678899999999999999999999
Q ss_pred e-CCeEEEEeCCC--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 322 R-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 322 s-D~TIklWd~~G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
| |.|+|||+.++ ++-..++||+.| ||..+||.||+||++|+. |+++||||+.+|+-++..+
T Consensus 234 ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred cCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeecC
Confidence 9 99999999964 455689999999 888999999999999985 9999999999999999999
Q ss_pred cCCC
Q 012410 399 ATNC 402 (464)
Q Consensus 399 gh~~ 402 (464)
||-.
T Consensus 298 gh~K 301 (311)
T KOG0315|consen 298 GHHK 301 (311)
T ss_pred Cccc
Confidence 9964
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=298.83 Aligned_cols=319 Identities=13% Similarity=0.135 Sum_probs=255.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
-++|++.-.+|...+|....=.+++.|..+ +..|-.+.||.-|++||..+ +. ..++-+|+.+.-.....+
T Consensus 277 t~~lvvgFssG~f~LyelP~f~lih~LSis-~~~I~t~~~N~tGDWiA~g~--~k-------lgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDFNLIHSLSIS-DQKILTVSFNSTGDWIAFGC--SK-------LGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred ceEEEEEecCCeeEEEecCCceEEEEeecc-cceeeEEEecccCCEEEEcC--Cc-------cceEEEEEeeccceeeec
Confidence 689999999999999998888899999774 45699999999999999844 22 258889998777665444
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEc
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSI 247 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi 247 (464)
+.|- ..+.++++| |||+++|+|+.|+.|||||...|-|+.|+. +..|..|.|+ .+-|+||+.||+
T Consensus 347 QgH~----~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 347 QGHS----DRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred cccc----cceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 4333 334489998 999999999999999999999999999998 5679999985 478999999999
Q ss_pred CCCcEEEEEeeCCcce-eeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 248 EDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~-~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
..+.+.+||+...... .+|+--| .|+.+.+|+ +-=.|.+|+++||+++.+|.||..+|.++.|+|+|++|||+| |+
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 9999999999652322 5555544 466666665 557899999999999999999999999999999999999999 99
Q ss_pred eEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 325 TVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 325 TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|||+||+ . -..+.+|+--.. |.+++|+|||+-||.+.- ||.|.+||++.+.-+.+|.|-.+
T Consensus 501 TVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTl-----------dgqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATL-----------DGQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred eEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEe-----------cceEEEEEhhhceeeccccchhh
Confidence 9999998 3 445667764332 789999999999999986 99999999999998888877543
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
...+. ...+ .+-+..+..-+..+++.||+||+.|.+|+....|.+++
T Consensus 564 ~~~gR-----------~~~D---~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 564 LSGGR-----------KETD---RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred ccccc-----------cccc---eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 11100 0000 01111112224789999999999999999999999886
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=271.17 Aligned_cols=262 Identities=10% Similarity=0.146 Sum_probs=221.6
Q ss_pred cceeehhccCCeEEeeec-----ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 98 RDIVFALAHSGVCAAFSR-----ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~-----~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
-++|..++.|.++-+|+. ..|+..+.+.+ |...|..|..++||++..+ ++-| +++++||+++|+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS----~swD------~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALS----ASWD------GTLRLWDLATGE 96 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEe----cccc------ceEEEEEecCCc
Confidence 688999999999999973 35778888955 9999999999999999888 4456 799999999999
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC----------C
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS----------S 238 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s----------~ 238 (464)
....|.+|+..++ +|+|| ||...|+|||.|+||||||.. |.|.+++. .++|..|.|+|+ .
T Consensus 97 ~t~~f~GH~~dVl----sva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 97 STRRFVGHTKDVL----SVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred EEEEEEecCCceE----EEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 8766666665555 99998 899999999999999999975 67888886 368999999884 7
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
|+|||+||+.+-++..+|-+|.+.+..|+|+|+ |...++|+.|+.+-|||+..++++.++. |+..|.+++|+|+--.|
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWL 248 (315)
T ss_pred CceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeE
Confidence 899999999999999999988899999999994 5556668899999999999999998876 56899999999998888
Q ss_pred EEEeCCeEEEEeC-CCceEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 319 LTFRNRTVAVWNF-RGELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 319 aS~sD~TIklWd~-~Ge~l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.+-+..|||||. ++.++.+|. |......+...-++|||+||++|.+|.. |+.|++|.+.
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----------d~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----------DNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----------CCcEEEEEee
Confidence 7777888999999 688887665 3322111222458999999999999986 9999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=295.86 Aligned_cols=217 Identities=17% Similarity=0.288 Sum_probs=190.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE------eCCCceeEEEEEcCCCcEEEEEe
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI------RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf------s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+-+..+.++ |+ .++||.-|.||||||.++.+|++.|. ++.|..+.| |.++|.||++||++||++++++-
T Consensus 198 kgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 198 KGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred CceEEEEec--ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 334468774 44 68899999999999999999998876 566877766 77899999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~ 332 (464)
||...|--+.|+. +.++++|.|.+|.+||+.+-. |.++|.||-..|..|.|+. ++++|+| |+|||+|+. +
T Consensus 275 hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 275 HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTST 349 (499)
T ss_pred hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccc
Confidence 9888889999965 899999999999999988743 6679999999999997754 5999999 999999999 7
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
++++++|.||.-.+ .+.--.|++++|||. |.||||||++.|.||+.|+||..
T Consensus 350 ~efvRtl~gHkRGI-------AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe---------- 401 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGI-------ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE---------- 401 (499)
T ss_pred eeeehhhhcccccc-------eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH----------
Confidence 99999999998763 233557999999986 99999999999999999999997
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|.++-| |.+.|+||.-||+||+||.
T Consensus 402 ------------------------LvRciRF--d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 ------------------------LVRCIRF--DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ------------------------hhhheee--cCceeeeccccceEEEEec
Confidence 7888999 6788999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=289.64 Aligned_cols=383 Identities=14% Similarity=0.168 Sum_probs=309.5
Q ss_pred cchhh-hhhccccceeeeecCCCCCcc-cchhhhccc------cceEEEEec--cceeehhccCCeEEeeecccccE--e
Q 012410 54 SNAQE-RFRNMHLVEEYDTHDPKGHCP-FVLPFLMKR------TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--I 121 (464)
Q Consensus 54 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~------s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~--l 121 (464)
.++|. +|=-++....-.+|..++.++ .+.||.+.| ..+..+-.. .++|.+.+.|-..++|++...+. .
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~ 182 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT 182 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce
Confidence 44454 333445555556777777776 667776655 345556555 78999999999999999888777 5
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCC--------------------cccc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS--------------------GFAL 179 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~--------------------~~~l 179 (464)
+.|+ +|.+.|-+-||..|...|.+||.+| .+-+|... -++... +-+.
T Consensus 183 ~~l~-gHkd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 183 YALN-GHKDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred Eecc-CCCcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 5674 4889999999999999999988443 56666553 111111 0010
Q ss_pred ee--------eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCCCc---------e
Q 012410 180 FE--------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSSH---------V 240 (464)
Q Consensus 180 ~~--------~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~d---------~ 240 (464)
+- .+.-.-+.+.+|. +.-.+||.|=..+...|+++..-.|++.|+ +..|..++|+..+| +
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred EEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 10 0000123378896 888999999999999999999999999877 68999999985433 5
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS 320 (464)
.+-+|+.++-..+...++|..++.+++++| |++.|++|++|+.|||||.++|-|+.|+..|+..|.+|.|+-.|+.++|
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 789999998877777778888999999999 4667777899999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+| |||||.||+ ++.+-+||..-..- .-..|+.-|.|.++..|+. .-=-|.+|+++|||.+-.|.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~----QfscvavD~sGelV~AG~~----------d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSCVAVDPSGELVCAGAQ----------DSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCce----eeeEEEEcCCCCEEEeecc----------ceEEEEEEEeecCeeeehhc
Confidence 99 999999999 79999999877653 2567888999999999876 13569999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccc-----ccc---CEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE-----ALE---DITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~---~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
||.+++.+..+++.++++||.+.+++.++|+.... .++ .|.+|+|+|||++||.+.-||.|.+||
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99998888899999999999999999999986653 333 899999999999999999999999998
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=301.29 Aligned_cols=237 Identities=13% Similarity=0.174 Sum_probs=201.0
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC---------CC--------------ccccee-eccc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP---------DS--------------GFALFE-SESL 185 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~---------~~--------------~~~l~~-~~~~ 185 (464)
..+.+..||+|+..||- +-.| -.|++|.+..-++ .. -....+ ....
T Consensus 379 ~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred CcceeEeecCCcchhhc----cccc------cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 45899999999998777 3344 5788887753221 00 000001 0134
Q ss_pred cCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe--cCCCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 186 KWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 186 ~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl--~~~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
+|.| .+.|+ |+-++|.|||.|+|+|||.+.|-.|+-.. +..+||.|.|+| +.|+|.+||+...-..
T Consensus 449 GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 449 GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 4544 79998 89999999999999999999999998544 467899999987 6999999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.|.+|+.-|.+|+|.|. ..++++||.|+|+|+||+.+|.+++.+.||..+|.+++|||+|++||||+ |+.|+|||+
T Consensus 528 lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 9999999899999999994 45777799999999999999999999999999999999999999999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
.|+++..|.||++- |.++.||.||..||||+. |.+|++||+..-.+.
T Consensus 607 ~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCeEEEEEchhhccc
Confidence 79999999999776 899999999999999987 999999999766555
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=291.15 Aligned_cols=256 Identities=15% Similarity=0.267 Sum_probs=210.5
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~t 209 (464)
.-|++|-|-- +.+++ |.-| +||+|||...-++...+.+|+..++ .+.| |.++|+|||.|.|
T Consensus 198 kgVYClQYDD--~kiVS----GlrD------nTikiWD~n~~~c~~~L~GHtGSVL----CLqy---d~rviisGSSDsT 258 (499)
T KOG0281|consen 198 KGVYCLQYDD--EKIVS----GLRD------NTIKIWDKNSLECLKILTGHTGSVL----CLQY---DERVIVSGSSDST 258 (499)
T ss_pred CceEEEEecc--hhhhc----cccc------CceEEeccccHHHHHhhhcCCCcEE----eeec---cceEEEecCCCce
Confidence 4577776643 55555 5556 8999999877777544443332222 4555 5689999999999
Q ss_pred EEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCc---EEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 210 YKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGT---VLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~---~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
|+|||++||+|++++- .+.|..+.|+. +.|.+|.+||+..-. |.+.|.+|...|..|+|.. .+|++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVs 335 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS 335 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEE
Confidence 9999999999999875 68899999965 699999999986433 3345667778889999944 57777
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI 356 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf 356 (464)
+|.|.|||+|++.|++|++++.||.-.+-. .-|.|++++||| |.||+|||+ .|.|++.|+||..- |..|-|
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF 408 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF 408 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee
Confidence 899999999999999999999999855533 469999999999 999999999 59999999999987 778888
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|.+.|+||.. ||+||+||+.++. |+.++-.|++
T Consensus 409 --d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~lv~hsg------------------------- 450 (499)
T KOG0281|consen 409 --DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTLVEHSG------------------------- 450 (499)
T ss_pred --cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhhhhccc-------------------------
Confidence 7899999987 9999999998865 7888888876
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|..|-| |--.|+|.+.|.||-+||
T Consensus 451 ---------RVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 451 ---------RVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ---------eeEEEee--cceEEEeccCCCeEEEEE
Confidence 8999999 567899999999999998
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=279.83 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=240.2
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
..+ .+|..||+||++.|-++.+++ ++.| +|++|||+++|++..+.++|... +..|+|| +---+|
T Consensus 145 rVi-~gHlgWVr~vavdP~n~wf~t----gs~D------rtikIwDlatg~LkltltGhi~~----vr~vavS-~rHpYl 208 (460)
T KOG0285|consen 145 RVI-SGHLGWVRSVAVDPGNEWFAT----GSAD------RTIKIWDLATGQLKLTLTGHIET----VRGVAVS-KRHPYL 208 (460)
T ss_pred hhh-hhccceEEEEeeCCCceeEEe----cCCC------ceeEEEEcccCeEEEeecchhhe----eeeeeec-ccCceE
Confidence 345 459999999999999999999 7788 99999999999997666655432 2389998 678899
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
-|++.|++||-|||+..+.++..++ ..|++++..| +.|.++|+||+.|-..+.+|.+|...|.+|.|.|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~- 287 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP- 287 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-
Confidence 9999999999999998887755543 5688888766 5889999999999999999998888999999988
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 272 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
.+.+++++|.|.||+|||++.|+.+.++..|...|++++..|.-.+|||+|-..||-|++ .|+.++.|.||..-
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~i----- 362 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAI----- 362 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccce-----
Confidence 478999999999999999999999999999999999999999999999999446999999 89999999999886
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 430 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (464)
+++++...||-+ ++|++ .|+|-.||..+|-+.+.++.--. |...+
T Consensus 363 intl~~nsD~v~-~~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-pGSl~---------------------- 407 (460)
T KOG0285|consen 363 INTLSVNSDGVL-VSGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-PGSLE---------------------- 407 (460)
T ss_pred eeeeeeccCceE-EEcCC-----------ceEEEEEecCcCccccccccccc-CCccc----------------------
Confidence 899999988754 56665 89999999999988776533221 11000
Q ss_pred ccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 431 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 431 ~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
--..|++-+|+..|..|+||..|.+|++|.
T Consensus 408 ---sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 408 ---SEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ---cccceeEEeecccCceEEeccCCcceEEEe
Confidence 001799999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=268.56 Aligned_cols=227 Identities=13% Similarity=0.179 Sum_probs=202.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-----
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG----- 250 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG----- 250 (464)
+-+.++.|+ +|.+.|+|+|+|+.+-|||..|.+..+-++ ..||+.+||+|+ -|..--|+++.+-
T Consensus 56 ~Ki~~~~ws-~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 56 NKIYAMDWS-TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred cceeeeEec-CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 344488997 899999999999999999999988877554 899999999995 4555667777643
Q ss_pred -cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEE
Q 012410 251 -TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVA 327 (464)
Q Consensus 251 -~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIk 327 (464)
..-+.|.+|..-+.+..|.. +++|+++|.|.|.-+||+++|+.++.+.||.+-|.+++++| ++++|+|++ |++.|
T Consensus 135 ~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 34456888878889999977 48999999999999999999999999999999999999999 999999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|||+ .|.|+++|+||..- ||+|.|-|+|.-+|+||+ |+|.||+|+...+-++.++..+.
T Consensus 213 lWD~R~~~c~qtF~ghesD-----INsv~ffP~G~afatGSD-----------D~tcRlyDlRaD~~~a~ys~~~~---- 272 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESD-----INSVRFFPSGDAFATGSD-----------DATCRLYDLRADQELAVYSHDSI---- 272 (343)
T ss_pred eeeccCcceeEeecccccc-----cceEEEccCCCeeeecCC-----------CceeEEEeecCCcEEeeeccCcc----
Confidence 9999 59999999999987 899999999999999997 99999999999999999864332
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+ ..|+||+||--|+.|..|..|.++.|||
T Consensus 273 -~---------------------------~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 273 -I---------------------------CGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred -c---------------------------CCceeEEEcccccEEEeeecCCceeEee
Confidence 1 2899999999999999999999999998
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.60 Aligned_cols=277 Identities=13% Similarity=0.150 Sum_probs=235.0
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC--cccceeeccccCceEEEEeCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS--GFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~--~~~l~~~~~~~~~~~VaFs~pd 197 (464)
++..+ .+|...|....|+|+|..+|| ++.| |+|-||++ -|++.. ..++|. +-+-.|.|. +|
T Consensus 39 p~m~l-~gh~geI~~~~F~P~gs~~aS----gG~D------r~I~LWnv-~gdceN~~~lkgHs----gAVM~l~~~-~d 101 (338)
T KOG0265|consen 39 PIMLL-PGHKGEIYTIKFHPDGSCFAS----GGSD------RAIVLWNV-YGDCENFWVLKGHS----GAVMELHGM-RD 101 (338)
T ss_pred hhhhc-CCCcceEEEEEECCCCCeEee----cCCc------ceEEEEec-cccccceeeecccc----ceeEeeeec-cC
Confidence 44455 678899999999999999999 7788 99999994 455532 223332 223369997 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE---------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI---------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf---------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
|..|.|++.|++++.||+++|++.+.+. ..-|.++.- |.+.|+|+||||+.+-+++++++.. -.+.+|
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-yqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-YQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-eeEEEE
Confidence 9999999999999999999999998766 344565553 3479999999999999999999632 456899
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC----C-ceEEEec
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----G-ELVTSFE 340 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~----G-e~l~tl~ 340 (464)
.|.- ..+++.+|+-|+.||+||++.++++.++.||.++|..+..||+|..++|-+ |.||++||++ + .|++.|+
T Consensus 181 ~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 181 GFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred Eecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 9965 578999999999999999999999999999999999999999999999999 9999999962 4 4799999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
||..-. .-+.-.+++||++..+..||. |..+.+||..+-.++.+|.||..
T Consensus 260 g~~hnf-eknlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------ 309 (338)
T KOG0265|consen 260 GHIHNF-EKNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------ 309 (338)
T ss_pred cchhhh-hhhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce------------------
Confidence 998632 123557899999999999886 99999999988899999999997
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 ----------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 ----------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=282.28 Aligned_cols=272 Identities=13% Similarity=0.198 Sum_probs=231.3
Q ss_pred eecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEecc--CCCCC-----------cccceeeccccCce
Q 012410 124 LNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDS-----------GFALFESESLKWPG 189 (464)
Q Consensus 124 ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~-----------~~~l~~~~~~~~~~ 189 (464)
+.. |...|-+-++||--+ .|++ ++.+ -+.++|+|.. +.+.. +...+. .+-+.
T Consensus 174 vl~-~~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~---nkdVT 239 (524)
T KOG0273|consen 174 VLR-HESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIGSTQLVLRHCIREGGKSVPS---NKDVT 239 (524)
T ss_pred ecc-CCCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhccccchhhhhhhhhhhhcccCCc---cCCcc
Confidence 434 888899999999888 6666 5555 6888999864 22210 011111 23344
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+++++ -+|..||+|+.||.+|+|+ ++|.++.+|. .++|.+|+++. +-|+|+-|||..+|++-+.|+.+
T Consensus 240 ~L~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred eEEec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 89997 7999999999999999999 4888888887 57899999954 57899999999999999999865
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT 337 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~ 337 (464)
...--.|+|.. +..+++++.|+.|+++-+.-...+.++.||.+.|.++-|.|.|++|||+| |+|+|||+. ++.+.+
T Consensus 318 s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 318 SAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred cCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 45546777765 47889999999999999999999999999999999999999999999999 999999998 799999
Q ss_pred EeccCCCCcCCCCeeEEEECCCC---------CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQ---------DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg---------~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
.|.+|..- |.++.+||+| ..||+++. |.|||+||+..|+|+++|..|+.
T Consensus 396 ~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~~------ 453 (524)
T KOG0273|consen 396 DLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQE------ 453 (524)
T ss_pred hhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCCC------
Confidence 99999977 7788899974 57788776 99999999999999999999997
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|+|||||.+|||||.||.|++|+
T Consensus 454 ----------------------------pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 454 ----------------------------PVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ----------------------------ceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=279.94 Aligned_cols=295 Identities=14% Similarity=0.142 Sum_probs=243.8
Q ss_pred eeehhccCCeEEeeecccccEeeEe--------------ecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 100 IVFALAHSGVCAAFSRETNRRICFL--------------NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~~l--------------n~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
++|....+-+-++|++..+...+.- .+.. .-|.+|++|-+|..||+ ++.+ ..++|
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~n-kdVT~L~Wn~~G~~Lat----G~~~------G~~ri 261 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSN-KDVTSLDWNNDGTLLAT----GSED------GEARI 261 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCcc-CCcceEEecCCCCeEEE----eecC------cEEEE
Confidence 5566666667788876541111111 1222 34899999999999999 6677 89999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ecC------CCEeEEEE-eC
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISD------KHVQEIKI-RS 236 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~~------~~V~~Vaf-s~ 236 (464)
|+ ..|.+..++.-| -+.+.++.++ -.|.+|+|++-|+|+-|||..+|++... ++. +|+....| ++
T Consensus 262 w~-~~G~l~~tl~~H----kgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 262 WN-KDGNLISTLGQH----KGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS 335 (524)
T ss_pred Ee-cCchhhhhhhcc----CCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec
Confidence 99 566655443333 3556699997 8999999999999999999999998754 442 34445555 56
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN- 315 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg- 315 (464)
+.|+.|.+.-+.--++.+||.||...|..+.|.|. +..|+++|+|+|+|||.+..+.|.+.|.+|...++++-+||+|
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred CCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 88999999999888899999988889999999885 4444557899999999999999999999999999999999975
Q ss_pred --------cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 316 --------QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 316 --------qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
-.+|+++ |.|||+||+ +|.|+.+|.+|+.. |.+|+|||||++||||+. ||.|.|
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsGs~-----------dg~V~i 478 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASGSL-----------DGCVHI 478 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEecCC-----------CCeeEe
Confidence 4688888 999999999 79999999999988 899999999999999998 999999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++++|+..+.+++.. .|..|.|+.+|..|.-.-.||.|.|=|
T Consensus 479 ws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQGTG-----------------------------------GIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ccccchheeEeecCCC-----------------------------------eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999999987754 799999999999999999999998865
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=244.23 Aligned_cols=266 Identities=16% Similarity=0.250 Sum_probs=228.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. +++|++...+|.+.+|+..+++.+..+. .|...+.++.|+|+++.+++++ .+ ..+++|
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~----~~------~~i~i~ 78 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGS----SD------KTIRLW 78 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEc----CC------CeEEEE
Confidence 455555555 6899999999999999998888888874 4778899999999999898844 45 699999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++..++....+..+. ..+..++|+ |++++|++++.|+.+++||+.+++++..+. ...|..++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 79 DLETGECVRTLTGHT----SYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred EcCcccceEEEeccC----CcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 998877654333222 234589997 789999999989999999999999988876 456999999883
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.++.|++||+.+++++..+..+...+..++|+|. +..+++++.|+.|++||+.+++++..+..|...+.++.|+|++.
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred cCCCcEEEEEccccccceeEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 3899999999999999999866567899999884 55788888899999999999999999989999999999999999
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++++++ |++|++||+ +++++..+.+|... +.+++|+|++++|++++. |++|++||
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 999999 999999999 59999999999876 889999999999999986 99999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=297.06 Aligned_cols=268 Identities=15% Similarity=0.224 Sum_probs=227.8
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~-ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
-++-.+.+.+.+.++++++|+..+++.+.. + .+|..-||+++|..-++.|++ ++.| +|+++||+.+|+
T Consensus 214 ~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~~~~lvs----gS~D------~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 214 LQLHDGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSGGDKLVS----GSTD------KTERVWDCSTGE 282 (537)
T ss_pred heeecCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecCCCEEEE----EecC------CcEEeEecCCCc
Confidence 334478899999999999999999999998 8 559999999999987889999 5666 899999999999
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEE
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKI 244 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIkl 244 (464)
|...+.+|+. .|.-.+-.+..+++||.|.||||||+.+|+++.++. ...|.+|.+. .+.|++|++
T Consensus 283 C~~~l~gh~s-------tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 283 CTHSLQGHTS-------SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKV 355 (537)
T ss_pred EEEEecCCCc-------eEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEE
Confidence 9766665553 322223467789999999999999999999999887 5789999884 468899999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
||+.+|+|+++|++|.++|.++.|..- ..+++|+.|++||+||+.++ +|+.++.+|...|..+ ...++.|+|++
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSA 431 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccc
Confidence 999999999999998899999987331 78888999999999999999 9999999999888654 56788999999
Q ss_pred CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|++||+||. +|+|++++++ |... |..+++. ...+++++. |++++|||+.+|++++++-.+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhhhhhc
Confidence 999999999 7999999999 5444 7777776 456666665 999999999999999988555
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 494 ~ 494 (537)
T KOG0274|consen 494 D 494 (537)
T ss_pred c
Confidence 4
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=262.59 Aligned_cols=250 Identities=11% Similarity=0.142 Sum_probs=215.3
Q ss_pred cCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec--C
Q 012410 151 ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--D 226 (464)
Q Consensus 151 ~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~--~ 226 (464)
++.| +|||+|...+|.|.++++.-. .+++.++.. ||++.||.|+.- .|||+|+.+++. +.++. .
T Consensus 16 A~YD------hTIRfWqa~tG~C~rTiqh~d----sqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 16 AGYD------HTIRFWQALTGICSRTIQHPD----SQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred ccCc------ceeeeeehhcCeEEEEEecCc----cceeeEEEc-CCcchhhhccCC-eeEEEEccCCCCCceeEEeccC
Confidence 6788 999999999999988776433 566699997 899999977655 699999998775 55554 6
Q ss_pred CCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 227 KHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 227 ~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
++|.+|.|- .++|+++||||+..-.|.+.|++. .+|.+|...|. ...|+++-.+|.|++||+.+..|.+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC-cceEEeecCCCcEEEEEccCCccccc
Confidence 899999994 479999999999998899989876 88999998883 46677788999999999999999987
Q ss_pred cccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 012410 299 SRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 369 (464)
Q Consensus 299 l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~ 369 (464)
+..+. ..+.+++.-|||.+++.+. -|+.-+|++ .+. .+..|+.|... +..+-+|||+++||++|.
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSPd~k~lat~ss- 235 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSPDVKYLATCSS- 235 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECCCCcEEEeecC-
Confidence 76654 4688999999999999999 899999997 433 35678888887 678889999999999875
Q ss_pred CCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 370 EPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 370 ~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
|+|+|||++.+= +.-..|+||+. +||..+||.||+
T Consensus 236 ----------dktv~iwn~~~~~kle~~l~gh~r----------------------------------WvWdc~FS~dg~ 271 (311)
T KOG0315|consen 236 ----------DKTVKIWNTDDFFKLELVLTGHQR----------------------------------WVWDCAFSADGE 271 (311)
T ss_pred ----------CceEEEEecCCceeeEEEeecCCc----------------------------------eEEeeeeccCcc
Confidence 999999999887 66778999996 999999999999
Q ss_pred EEEEeeCCCcEEeccC
Q 012410 449 EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 449 ~LaSgs~DgtVrlWd~ 464 (464)
+|+|||.|+++||||.
T Consensus 272 YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDL 287 (311)
T ss_pred EEEecCCCCceeeccc
Confidence 9999999999999985
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=299.18 Aligned_cols=224 Identities=10% Similarity=0.119 Sum_probs=194.3
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCC----e----EEEEec-CCCEeEEEEeC---------CCceeEEEEEcC
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----T----MLYSIS-DKHVQEIKIRS---------SSHVPLKILSIE 248 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg----~----~l~tl~-~~~V~~Vafs~---------s~d~tIklWdi~ 248 (464)
.+.+|+|+ |||++||+|+.|++|||||+.+. . ...++. ...|.+++|+| +.|++|+|||++
T Consensus 485 ~V~~i~fs-~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 485 LVCAIGFD-RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred cEEEEEEC-CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 34489997 89999999999999999997542 1 122232 45688888865 468999999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc-CCCcEEEEEe-CCeE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTV 326 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs-pdgqllaS~s-D~TI 326 (464)
+++++.++.+|...|++|+|+|.++..|++++.|++|+|||+.+++++.++..| ..+.++.|+ ++|++||+++ |++|
T Consensus 564 ~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 999999999877899999999866677888999999999999999999998876 578899995 6899999999 9999
Q ss_pred EEEeC-CCc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC------CeEEEEEc
Q 012410 327 AVWNF-RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT------GKCLAKIN 398 (464)
Q Consensus 327 klWd~-~Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t------G~cl~tl~ 398 (464)
++||+ +++ .+.++.+|... |..+.|+ |+.+|+|+|. |++|+|||+.+ ++++.++.
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~-----V~~v~f~-~~~~lvs~s~-----------D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKT-----VSYVRFV-DSSTLVSSST-----------DNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EEEECCCCCccceEecCCCCC-----EEEEEEe-CCCEEEEEEC-----------CCEEEEEeCCCCccccCCcceEEEc
Confidence 99999 455 67899999987 8899997 7899999987 99999999974 47899999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
||.+ .|..++|+|+|+.||||+.|++|+||+
T Consensus 706 gh~~----------------------------------~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 706 GHTN----------------------------------VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCC----------------------------------CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9987 889999999999999999999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=256.07 Aligned_cols=281 Identities=13% Similarity=0.166 Sum_probs=208.9
Q ss_pred EeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.++.+ .+|.+.+|+|+++|- |.+||+ ++.| ++++||+...|+.......+...+.+-+.+|||+ |.|
T Consensus 6 ~~~~~-~gh~~r~W~~awhp~~g~ilAs----cg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKL-SGHKDRVWSVAWHPGKGVILAS----CGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEee-cCCCCcEEEEEeccCCceEEEe----ecCC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 44566 458889999999997 778888 7788 9999999765543211111111234555589998 999
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
++||+||.|.|+-||.-..+ +=+|+.+|++|-..|++|+|++ +|..|++
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~------------------------------efecv~~lEGHEnEVK~Vaws~-sG~~LAT 122 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDG------------------------------EFECVATLEGHENEVKCVAWSA-SGNYLAT 122 (312)
T ss_pred cEEEEeeccceEEEeecCCC------------------------------ceeEEeeeeccccceeEEEEcC-CCCEEEE
Confidence 99999999999999973322 2467888998878899999999 5777777
Q ss_pred EeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C---ceEEEeccCCCCcCCCC
Q 012410 279 KQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G---e~l~tl~gH~~~~~~~~ 350 (464)
.+.|+.|=||.+..+ +|+.+|++|++-|--|+|.|...+|+|+| |.|||+|... + +|+++|.+|.+-
T Consensus 123 CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T----- 197 (312)
T KOG0645|consen 123 CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT----- 197 (312)
T ss_pred eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce-----
Confidence 899999999998854 48889999999999999999999999999 9999999863 3 599999999986
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCC----CCC--cccccCCCCC-Cccccc-
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNC----SPK--VDDELGSSST-GKSKKL- 421 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~----~~~--~~~~~~~~~~-~~~~~~- 421 (464)
||+++|.|+|..|+|++. |+||+||-..+ .+.+ |+. -|. +.+|+..|+. +.-...
T Consensus 198 VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLYT-----DLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKES 261 (312)
T ss_pred EEEEEecCCCceEEEecC-----------CcceEeeeecc-----CcchhcccceEeeeecccceEeccCCCEEEEEEec
Confidence 999999999999999987 99999997432 1111 111 011 2333333321 000000
Q ss_pred ----cccccccc-cccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 422 ----NKSSYIRS-TVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 422 ----~~~~~~~~-~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
...+++-. ..+.+-..|.+|+|+|. ++.|+||+.||+|++|.+
T Consensus 262 ~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 262 DSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred CCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 01122211 22233349999999995 889999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=281.60 Aligned_cols=269 Identities=15% Similarity=0.140 Sum_probs=221.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
-...|..|-+.|+|+-|+++| +- ....||+... ..|...-..|-.-+.+++++ +||..++||+.|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs----~S------GEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws-~~g~wmiSgD~g 159 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGS----QS------GEFTLWNGTS----FNFETILQAHDSPVRTMKWS-HNGTWMISGDKG 159 (464)
T ss_pred cccceeeEEEcCCCceeEeec----cc------ccEEEecCce----eeHHHHhhhhcccceeEEEc-cCCCEEEEcCCC
Confidence 345689999999999999965 22 4566777411 11111111122334489998 899999999999
Q ss_pred CcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 208 SIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
+.||+|+.. -+.++.+. ++.|+++|||| ++|++|||||..-.+.-..|.+|.--|++|++.|. .+.|
T Consensus 160 G~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~-kgLi 237 (464)
T KOG0284|consen 160 GMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT-KGLI 237 (464)
T ss_pred ceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc-ccee
Confidence 999999964 33444333 57899999987 58999999999988888889988678899999996 5677
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEE
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
+++|.|.+||+||.++|+|+.++.+|.+.|.++.|+|++++|+|+| |.++|+.|++ =+.+.++++|..- |+++
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~~ 312 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTSL 312 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----heee
Confidence 7789999999999999999999999999999999999999999999 9999999995 7888999999987 8999
Q ss_pred EECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 355 YITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 355 afSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
+++| .-.++.||+. ||.|..|.+...+-+..+ .+|..
T Consensus 313 ~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd~------------------------------ 351 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHDG------------------------------ 351 (464)
T ss_pred ccccccccceeeccC-----------CCceEEEeccccccccCCCccccc------------------------------
Confidence 9999 5677888775 999999999755655555 34554
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|||++|+|=|++|+|||.|++||.|.
T Consensus 352 ----~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 352 ----EIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ----ceeeeeccccceeEeecCCCcceeeec
Confidence 899999999999999999999999995
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=285.48 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=204.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+|.|. |-.-.+..+=..|++-|||.+|.++++++. +.+|++.+|=+ ++|..|++++..|++.+++|+-|
T Consensus 18 sVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 18 SVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 89996 788888888899999999999999999987 67899999943 78999999999999999999977
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CCce
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
..-+++|+-+|. ...+|++|+|-+||+||.+.+ .|.+++.||...|..|+|.| |...|||+| |+|||||.+ +-.+
T Consensus 97 ~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence 788999999996 568999999999999997765 48899999999999999997 788999999 999999999 7899
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg--~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~ 413 (464)
..||+||... ||.|.|=|-| -+|+||++ |.||||||.+|.+|++||.||++
T Consensus 176 nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----------- 228 (794)
T KOG0276|consen 176 NFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----------- 228 (794)
T ss_pred ceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----------
Confidence 9999999988 8899887755 59999997 99999999999999999999997
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 414 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|..+.|+|.=.+|+|||+|||||||.+
T Consensus 229 -----------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 -----------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -----------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 8999999999999999999999999974
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=281.54 Aligned_cols=269 Identities=14% Similarity=0.188 Sum_probs=230.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+.+.|.||-|.|---.++. |-| + .++-||+..+......+..-.. .+.+..|= +--..++.||.|
T Consensus 12 rSdRVKsVd~HPtePw~la-~Ly---n------G~V~IWnyetqtmVksfeV~~~----PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALY---N------GDVQIWNYETQTMVKSFEVSEV----PVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEE-eee---c------CeeEEEecccceeeeeeeeccc----chhhheee-eccceEEEecCC
Confidence 7788999999998776655 333 3 6899999888777655443332 22256664 455689999999
Q ss_pred CcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
..|||++..|++.++++. .+-|++|+.+| ++|.+||+||.+. -.|.++|++|.|-|..|+|.|-|+.++
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce
Confidence 999999999999999987 56799999977 6899999999985 468899999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+++|-|+|||+|.+.+..+.-||.||...|..|.|-| |..+|+||+ |.||||||. +-.|++||+||++- |+
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-----vs 231 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-----VS 231 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----ce
Confidence 9999999999999999999999999999999999884 567999999 999999999 69999999999986 89
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.++|+|.=-+|+|||+ |||+|||+-.|-+...+|+
T Consensus 232 ~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn---------------------------------- 266 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN---------------------------------- 266 (794)
T ss_pred EEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh----------------------------------
Confidence 9999999999999986 9999999987777666552
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
..+++||+|+-.+.+..++.|.+.|.|-|
T Consensus 267 ~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 23459999999999999999999998754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=287.72 Aligned_cols=267 Identities=16% Similarity=0.199 Sum_probs=229.9
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
+....|.+++|.|---.+.+ | --. ..|.+||.+.|-++..|.-|. |.+..|+|. |.+.+.+||+.
T Consensus 7 skSsRvKglsFHP~rPwILt-s---lHs------G~IQlWDYRM~tli~rFdeHd----GpVRgv~FH-~~qplFVSGGD 71 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILT-S---LHS------GVIQLWDYRMGTLIDRFDEHD----GPVRGVDFH-PTQPLFVSGGD 71 (1202)
T ss_pred cccccccceecCCCCCEEEE-e---ecC------ceeeeehhhhhhHHhhhhccC----Cccceeeec-CCCCeEEecCC
Confidence 34567899999998887776 2 222 699999999999876555444 555699996 99999999999
Q ss_pred CCcEEEEeCCCCeEEEEecC--CCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|.+||||+.++-.|++||.+ +.|+.+.|+ +|+|+||+|||.++++|+.+|++|.|-|.+-+|.|- .+.+
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-EDlI 150 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-EDLI 150 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-cceE
Confidence 99999999999999999974 679999994 589999999999999999999999999999999994 5677
Q ss_pred EEEeCCCeEEEEECCC--------C-------------------cE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 277 LVKQENENLQILDVRN--------A-------------------EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 277 la~s~D~tIkIWDv~t--------g-------------------~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+++|-|+|||+||+.. | .+ .+++.||.-.|.-++|.|.-.+|+||+ |+.|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 7789999999999754 1 11 247899999999999999999999999 9999
Q ss_pred EEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 327 AVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 327 klWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
|+|-.+ -+ .+-|..||.+- |.++-|+|.+++|+|.|+ |++||+||+...+++++++--.+
T Consensus 231 KlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrrend- 293 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREND- 293 (1202)
T ss_pred eEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccCC-
Confidence 999983 33 57799999997 889999999999999876 99999999999999999976554
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.-|-||-+|..+..|.|-+.|.|
T Consensus 294 ---------------------------------RFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 294 ---------------------------------RFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ---------------------------------eEEEEEecCCcceeeeecCCceE
Confidence 78999999999988877766654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=269.14 Aligned_cols=227 Identities=15% Similarity=0.287 Sum_probs=209.8
Q ss_pred ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
.|++|+.+|+|+ |..+.+++||.|+||||||+++|++..||.+ ..|++|+||+ ..|+.||-||+|..++
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 478999999996 8889999999999999999999999999884 6799999975 6999999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++..-+|++.|.+++..|- -+.|++++.|.++|+||+++..-+.++.||..+|.+|.|.|-.-.++|+| |+||+|||+
T Consensus 228 IR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred HHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 9999888999999999884 56788899999999999999999999999999999999998888899999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.|+-..+|..|.-- |.+++.+|....+||+|. ..||-|++..|.-++.|.||+.
T Consensus 307 ~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~-------- 361 (460)
T KOG0285|consen 307 RAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA-------- 361 (460)
T ss_pred ccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc--------
Confidence 59999999999876 899999999999999985 4699999999999999999997
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|.+|+-+.|| .+++|++.|++..||
T Consensus 362 --------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 --------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78899999888 589999999999998
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=277.08 Aligned_cols=233 Identities=14% Similarity=0.147 Sum_probs=183.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCc
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSH 239 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d 239 (464)
...-++.-..|+.....+++. +|.+.+..|+|+ | |+++||+||.|++|||||+.++.+...
T Consensus 52 g~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fs-P~d~~~LaSgS~DgtIkIWdi~~~~~~~~---------------- 113 (493)
T PTZ00421 52 STAVLKHTDYGKLASNPPILL-GQEGPIIDVAFN-PFDPQKLFTASEDGTIMGWGIPEEGLTQN---------------- 113 (493)
T ss_pred ceEEeeccccccCCCCCceEe-CCCCCEEEEEEc-CCCCCEEEEEeCCCEEEEEecCCCccccc----------------
Confidence 444455556777654434443 244556689998 6 899999999999999999876532110
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
..+++.+|.+|...|..|+|+|..+..|++++.|++|+|||+.+++++..+.+|...|.+++|+|||++||
T Consensus 114 ---------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLa 184 (493)
T PTZ00421 114 ---------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC 184 (493)
T ss_pred ---------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEE
Confidence 13456677777788999999985445777789999999999999999999999999999999999999999
Q ss_pred EEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEE
Q 012410 320 TFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAK 396 (464)
Q Consensus 320 S~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~t 396 (464)
|++ |++|+|||+ +|+++.++.+|.... +..+.|.|++.+|++++. +.+.|++|+|||+.+.+ ++.+
T Consensus 185 tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~-------s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGC-------SKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEec-------CCCCCCeEEEEeCCCCCCceeE
Confidence 999 999999999 699999999998652 346789999999888764 12458999999998754 5555
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
+..+.. ..+...+|+||++.|++|+ .|++||+||.
T Consensus 254 ~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 254 VDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 544432 0566789999999999988 5999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=257.84 Aligned_cols=353 Identities=15% Similarity=0.181 Sum_probs=268.1
Q ss_pred cCcchhhhhhhcccccccCCccccc--------cchhhhhhccc------cceee-eecCCCCCcccchhhhccccceEE
Q 012410 29 DGFVNSVKKLQRREICSKRDRAFSI--------SNAQERFRNMH------LVEEY-DTHDPKGHCPFVLPFLMKRTKVIE 93 (464)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~l~~l~~~s~v~~ 93 (464)
.+..+-|.||-+.|=+....+.|-. ..-.|--+.-+ |.-|| .-+.|+..+.-+ .....|-.
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~----~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCF----LHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCccccc----cchhhhhh
Confidence 3456778888888877666666522 22222222222 33445 566666655443 34566777
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCCcccceeeEEEEEecc
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~---l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
+-+++..|.+.+++|+.++|+ ..|+.++++ .+|...|.++++---++. +++ ++.| ++++||-+.-
T Consensus 111 v~~~~~~IltgsYDg~~riWd-~~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs----as~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWD-LKGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS----ASMD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEe-cCCceEEEE-ecCCcceeeeEEEecCCccceEEE----ecCC------ceEEEEEecC
Confidence 777899999999999999999 889999999 569999998887666666 777 5677 9999999988
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC----CceeEEEEE
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS----SHVPLKILS 246 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s----~d~tIklWd 246 (464)
|...-....-..+|-+-+.+|+-+ ++|...+|||.|.++|||+..+ ...-++.. +.-.+. ....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~-----~s~~rrk~~~~~~~----- 246 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELES-----SSNRRRKKQKREKE----- 246 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccc-----cchhhhhhhhhhhc-----
Confidence 876321111111222444588886 8999999999999999999432 22112211 000110 1111
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
..+++.+.+|.+|...|.+|.|.+ .+.+.++|.|+|||.||+.+|.++-++.+. ....++..+|...+||+|| |+-
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc
Confidence 235888999999999999999987 488899999999999999999999988876 4688999999999999999 999
Q ss_pred EEEEeC-C--CceE-EEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEcc
Q 012410 326 VAVWNF-R--GELV-TSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINA 399 (464)
Q Consensus 326 IklWd~-~--Ge~l-~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~g 399 (464)
|+|||. + |..+ ++|.||.+| |.+|.++|. -..|+|||. |+|+||||+.+-+ .|.+|.+
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCcceeecc
Confidence 999997 3 5554 599999999 889999995 567889887 9999999999988 8999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|.+ .|.++.++ +|..|+||+.|.+|++..
T Consensus 388 h~D----------------------------------Kvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 388 HND----------------------------------KVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCc----------------------------------eEEEEecc-CCceEEeccCcceEEEec
Confidence 987 89999997 677899999999999853
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=272.45 Aligned_cols=283 Identities=14% Similarity=0.198 Sum_probs=243.6
Q ss_pred ccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEE
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEF 193 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaF 193 (464)
.--+.++++ .+|..-|-++-|.| -+..|.+ ++-| ..|+||++-. |+|..+|.+|... +..++|
T Consensus 202 ~Pkk~~~~~-~gH~kgvsai~~fp~~~hLlLS----~gmD------~~vklW~vy~~~~~lrtf~gH~k~----Vrd~~~ 266 (503)
T KOG0282|consen 202 LPKKLSHNL-SGHTKGVSAIQWFPKKGHLLLS----GGMD------GLVKLWNVYDDRRCLRTFKGHRKP----VRDASF 266 (503)
T ss_pred ccHhheeec-cCCccccchhhhccceeeEEEe----cCCC------ceEEEEEEecCcceehhhhcchhh----hhhhhc
Confidence 445677788 55889999999999 7888887 6677 8999999965 9999999988853 238999
Q ss_pred eCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 194 s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+ ++|.-+.|+|.|+++|+||++||+|+..++ +..+..|+|.|+ .|+.|+.||+.+|++++...+|+..+
T Consensus 267 s-~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 N-NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred c-ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 8 899999999999999999999999999998 566789999885 67899999999999999998888999
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC----CCceEE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----RGELVT 337 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----~Ge~l~ 337 (464)
.+|.|.+ +|.+.+++++|++++||+.+.+-.++.. ..+..+..++...|++..++.-+ |..|-+... .-...+
T Consensus 346 ~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 9999999 5788888999999999999998877643 33334557788899999999999 999988875 234566
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
.|+||... .|. -.|.|||||.+|+||+. ||.+.+||..|-+.+.+|++|+.
T Consensus 425 ~feGh~va--Gys-~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~~--------------- 475 (503)
T KOG0282|consen 425 RFEGHSVA--GYS-CQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHDQ--------------- 475 (503)
T ss_pred hhcceecc--Cce-eeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCCc---------------
Confidence 99999754 443 36999999999999975 99999999999999999999976
Q ss_pred cccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd 463 (464)
.+..+.|+|-- ..+||++-||.|++|+
T Consensus 476 -------------------~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 -------------------PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------------------ceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999965 4799999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=282.50 Aligned_cols=223 Identities=15% Similarity=0.224 Sum_probs=201.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
.++|. |.--.+.++=..+.|++||..=|.||..+. ++.|+.|+|+| .+|..||+|+..+-+|+-||.+|
T Consensus 14 glsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH 92 (1202)
T KOG0292|consen 14 GLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH 92 (1202)
T ss_pred ceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence 79996 888889999999999999999999997765 78999999976 58899999999999999999999
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc----
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---- 334 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge---- 334 (464)
+.-|+.+.|.+- -.-|+++|+|+||||||.++++|+.+++||...|.+..|.|.-.+++|+| |+||||||+.|-
T Consensus 93 lDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 999999999873 35799999999999999999999999999999999999999999999999 999999995431
Q ss_pred ------------------e--------EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 335 ------------------L--------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 335 ------------------~--------l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+ .+.|+||.-. ||-++|+|.--+|+||++ |..||||-.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-----------DRqVKlWrm 235 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-----------DRQVKLWRM 235 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC-----------cceeeEEEe
Confidence 1 3478999877 899999999999999997 999999987
Q ss_pred CCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 389 LTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 389 ~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..-+- +-|.+||.+ .|.+|-|+|..+.|.|.|+|++|||||+
T Consensus 236 netKaWEvDtcrgH~n----------------------------------nVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYN----------------------------------NVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred ccccceeehhhhcccC----------------------------------CcceEEecCccceeEecCCCccEEEEec
Confidence 65553 567889998 8999999999999999999999999996
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=229.30 Aligned_cols=269 Identities=13% Similarity=0.175 Sum_probs=205.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
++++++...+|.+.+||..+++.+..++. +.. ++++.|+|+|+.+++++ ..+ .++++|++.+|+....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~-~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQR-PRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIGTL 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CCC-CCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEec
Confidence 46778888999999999999999999865 433 68899999999875533 334 68999999988864322
Q ss_pred cceeeccccCceEEEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCC---------ceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS---------HVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~---------d~tIklWd 246 (464)
+.. ..+..++|+ |+|+.|+ +++.|+++++||+.+++++..+. ...+.+++|+|+. ...+.+||
T Consensus 70 ~~~-----~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 70 PSG-----PDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred cCC-----CCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 211 224478997 8998764 55679999999999999888876 4557889998852 23577889
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCC-------CceEEEEEcCCCcEE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEF-------MTPSAFIFLYENQLF 318 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~-------~~v~sv~Fspdgqll 318 (464)
.++++++..+... +....++|+++ +..+++++ .|++|++||+.+++++..+..+. ..+..++|+|||+.+
T Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 144 TKTYEIVDNVLVD-QRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred CCCCeEEEEEEcC-CCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 9999988766532 44577899884 55665654 79999999999999887654321 235578899999975
Q ss_pred EE-Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 319 LT-FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 319 aS-~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+. .. +++|.+||. +++++..+..+ .. +++++|+|||++|++++. .+++|++||+.+++|++
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKVIK 285 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcEEE
Confidence 44 44 778999999 68888766422 23 678999999999998743 38999999999999999
Q ss_pred EEccCC
Q 012410 396 KINATN 401 (464)
Q Consensus 396 tl~gh~ 401 (464)
+++...
T Consensus 286 ~~~~~~ 291 (300)
T TIGR03866 286 SIKVGR 291 (300)
T ss_pred EEEccc
Confidence 997653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=249.97 Aligned_cols=224 Identities=12% Similarity=0.226 Sum_probs=193.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE--E--EecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--Y--SISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l--~--tl~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~ 257 (464)
...|+ |+|..||||+.|..|-||++. |.|- - +++.+.|++|.|.+ +.|++|+.||++||++.+.++
T Consensus 52 ~~~F~-P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 52 TIKFH-PDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEC-CCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 79997 899999999999999999964 3332 2 34467899999954 689999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 258 HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
+|..-+.+++- ...|-+|+. +|.|+|+||||+++.++++++...+ .+.||.|..++..+.||. |+.||+||. .++
T Consensus 130 ~h~~~vNs~~p-~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 130 GHTSFVNSLDP-SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred cccceeeecCc-cccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccccCceeeeccccCc
Confidence 87777788882 224666666 6799999999999999999987554 689999999999999999 999999999 699
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----CCeEEEEEccCCCCCCccccc
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----TGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~----tG~cl~tl~gh~~~~~~~~~~ 410 (464)
++.+++||... |..++.||+|.+|.|-+. |.||++||+. ..+|++.++||.. ..+
T Consensus 208 ~~~~lsGh~Dt-----It~lsls~~gs~llsnsM-----------d~tvrvwd~rp~~p~~R~v~if~g~~h---nfe-- 266 (338)
T KOG0265|consen 208 GLYTLSGHADT-----ITGLSLSRYGSFLLSNSM-----------DNTVRVWDVRPFAPSQRCVKIFQGHIH---NFE-- 266 (338)
T ss_pred ceEEeecccCc-----eeeEEeccCCCccccccc-----------cceEEEEEecccCCCCceEEEeecchh---hhh--
Confidence 99999999998 889999999999999998 9999999985 4789999999974 000
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.-....++||++..+..||.|+.|.+||
T Consensus 267 -------------------------knlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 267 -------------------------KNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred -------------------------hhcceeeccCCCCccccccccceEEEee
Confidence 0344589999999999999999999998
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=258.73 Aligned_cols=275 Identities=15% Similarity=0.237 Sum_probs=225.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|..-+.+|-|-++.+.|++ ++.| +.|++|++.-+++..-..|-. ..+.+.+++|+ ++++.+.+++.
T Consensus 173 ~h~gev~~v~~l~~sdtlat----gg~D------r~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d-~~~~~~iAas~ 239 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLAT----GGSD------RIIKLWNVLGEKSELISTLAG--SLGNITSIDFD-SDNKHVIAASN 239 (459)
T ss_pred ccccccceeEEccCcchhhh----cchh------hhhhhhhcccchhhhhhhhhc--cCCCcceeeec-CCCceEEeecC
Confidence 47888999999999999999 7777 999999997777532222222 34556689997 78889888999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEE--------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKI--------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|++.++|++.+++++.||+ .+.|.++.| +.+.|.|||+||+..+.|.++.--. ..+..|.-.+ ..+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~~---~~~ 315 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCSI---SDV 315 (459)
T ss_pred CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEecc---eee
Confidence 9999999999999998877 567888888 3478999999999999999987521 3445555432 233
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEE
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
++|-.|++||.||++++.+......|. .|.++..+++|.-++|++ |.|+++-|++ -+..++|..-... ..+.++.+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrv 393 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRV 393 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-ccccccee
Confidence 445599999999999999999988885 899999999999999999 9999999995 5566666643221 22335789
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
.||||+.|+|.||. ||.|+||++.+|||-..++..+..+
T Consensus 394 vfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s~~------------------------------ 432 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTSNA------------------------------ 432 (459)
T ss_pred EECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCCCc------------------------------
Confidence 99999999999987 9999999999999999998766411
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++++|+|-|..|++++.++.+.||.
T Consensus 433 --aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 433 --AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred --ceEEEEEcCCCchhhcccCCcceEecC
Confidence 699999999999999999999999994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=255.69 Aligned_cols=277 Identities=11% Similarity=0.177 Sum_probs=229.0
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceeeccccCc---eEEEEeCC
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFESESLKWP---GFVEFDDV 196 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~~~~~~~---~~VaFs~p 196 (464)
-+.+ ..|.+-||=+-||+||++||++| -| .|+-||.+- .+++. ..++. .+|. .++.|| |
T Consensus 217 ~qil-~~htdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~k---l~~tl--vgh~~~V~yi~wS-P 279 (519)
T KOG0293|consen 217 WQIL-QDHTDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHFK---LKKTL--VGHSQPVSYIMWS-P 279 (519)
T ss_pred hhhH-hhCCCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCccee---eeeee--ecccCceEEEEEC-C
Confidence 3456 45777899999999999999955 44 688899883 33321 12232 2443 379998 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC-Cccee
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL-LHRNK 264 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~-~~~~~ 264 (464)
|.++|.+|+.|..+++||+.||.+.+..+ +..+.++++-| +.|.+|-.||+. |..+...++- ...+.
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVH 358 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeE
Confidence 99999999999999999999999987766 35688899877 478999999995 8888887742 35678
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.++..+ +|.++++...|..|+|++..+..++.....| +.+.++..|.||++++..= +++|.+||+ +..+++.+.||
T Consensus 359 dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 359 DLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEEcC-CCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 999877 5788888889999999999999888766655 5799999999999999988 999999999 68899999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccc
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
...+. .|.|+.=--|.++|||||+ |+.|+||+-.+|+.+++|.||+.
T Consensus 437 kq~~f--iIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~-------------------- 483 (519)
T KOG0293|consen 437 KQGHF--IIRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK-------------------- 483 (519)
T ss_pred cccce--EEEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc--------------------
Confidence 98654 2566655667899999986 99999999999999999999996
Q ss_pred ccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|..|+++|... .+||||+|||||+|.+
T Consensus 484 --------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 --------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred --------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 899999999664 6899999999999964
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=239.44 Aligned_cols=193 Identities=14% Similarity=0.224 Sum_probs=164.7
Q ss_pred EEEEeCCC-CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe-eCCcceeeEE
Q 012410 190 FVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVD 267 (464)
Q Consensus 190 ~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~ 267 (464)
+|||+ |- |.+||||+.|++||+|++..|.- -+|..+|. +|...|++||
T Consensus 19 ~~awh-p~~g~ilAscg~Dk~vriw~~~~~~s-----------------------------~~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 19 SVAWH-PGKGVILASCGTDKAVRIWSTSSGDS-----------------------------WTCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred EEEec-cCCceEEEeecCCceEEEEecCCCCc-----------------------------EEEEEeccccchheeeeee
Confidence 89997 66 88999999999999999764211 11222222 3446678899
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCC--cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--C--ceEEEec
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--ELVTSFE 340 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--G--e~l~tl~ 340 (464)
|+|. +..|+++|.|.|+-||--..+ +|+.+|.||.+.|-+|+||++|.+||++| |+.|=||.++ + +|+..|+
T Consensus 69 wsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 9884 556666899999999975544 69999999999999999999999999999 9999999984 3 3899999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC---CCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+|+.- |.-|.|+|...+|+|+|. |.|||+|.-. .-+|+++|.||++
T Consensus 148 ~HtqD-----VK~V~WHPt~dlL~S~SY-----------DnTIk~~~~~~dddW~c~~tl~g~~~--------------- 196 (312)
T KOG0645|consen 148 EHTQD-----VKHVIWHPTEDLLFSCSY-----------DNTIKVYRDEDDDDWECVQTLDGHEN--------------- 196 (312)
T ss_pred ccccc-----ccEEEEcCCcceeEEecc-----------CCeEEEEeecCCCCeeEEEEecCccc---------------
Confidence 99986 788999999999999998 9999999866 3479999999997
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||+++|+|.|+.|+|+++|+||+||.
T Consensus 197 -------------------TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 197 -------------------TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred -------------------eEEEEEecCCCceEEEecCCcceEeee
Confidence 899999999999999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=261.98 Aligned_cols=287 Identities=15% Similarity=0.165 Sum_probs=242.6
Q ss_pred ccCCeEEeeeccc-ccE------e--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 105 AHSGVCAAFSRET-NRR------I--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 105 ~~~g~~~~~~~~~-g~~------l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
-++.++..|.+.. +.. + .++ ++|.+-||++.+|.++..+++ +.. ..++||+..+++|..
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~S----ga~-------~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLAS----GAG-------ESIKIWNRDTLKCIR 408 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeee----cCC-------CcEEEEEccCcceeE
Confidence 3444566666443 222 1 234 568888999999998877766 434 499999999999975
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEE
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklW 245 (464)
++ +++ +.-...|- |.+++++.|.-.|.+.|+|+....++-++. ++.||+|+.+| +.|+|||+|
T Consensus 409 Ti---~~~---y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 409 TI---TCG---YILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred Ee---ccc---cEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 43 342 44478886 899999999999999999999999988776 78899999988 489999999
Q ss_pred EcC-----CCcEEE--------EEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 246 SIE-----DGTVLK--------VFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 246 di~-----tG~~l~--------tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
|.+ .|+.-+ +|+ ....+-+|.++|+ +++|+ +=-|.|++|+=+.+-+..-.|-||.-+|.++..
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 864 243322 232 2356799999995 66666 459999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|||+++++|+| |++||+|-++ |.|-++|-+|+.. |.+|-|-|+..++.++++ |+.||=||-.
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg~ 622 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDGE 622 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeechh
Confidence 99999999999 9999999997 9999999999988 889999999999999998 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.=+|+++|.||.. .||++|.+|+|..++|+|.|.+||+|.
T Consensus 623 kFe~iq~L~~H~~----------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 623 KFEEIQKLDGHHS----------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhheeeccchh----------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999987 999999999999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-28 Score=250.04 Aligned_cols=298 Identities=12% Similarity=0.092 Sum_probs=235.8
Q ss_pred eeehhccCCeEEeeecccccEee---EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 100 IVFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~---~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.|++++.|+++..|+ |-+.+ ++ ..|..+|++|-|||||..+|+++ +| +++.|+|=.+|+..+.
T Consensus 162 Ri~T~sdDn~v~ffe---GPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~g---sD-------gki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFE---GPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAG---SD-------GKIYIYDGKTGEKVGE 227 (603)
T ss_pred EEEeccCCCeEEEee---CCCeeeeecc-cccccceeeEEECCCCCeEEEec---CC-------ccEEEEcCCCccEEEE
Confidence 367788888999885 55444 35 55888999999999999999977 33 5899999889887654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE----eEEEE------eCCCceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV----QEIKI------RSSSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V----~~Vaf------s~s~d~tIklW 245 (464)
+.. ...|-+-+.+++++ ||++.++++|.|+|+||||+.+.++..++. ...| -.+.+ +-+-+++|-++
T Consensus 228 l~~-~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 228 LED-SDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ecC-CCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 432 11133445589998 999999999999999999999999999887 2221 12222 23577899999
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCC--------------------
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFM-------------------- 304 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~-------------------- 304 (464)
+..++..++++.+|...+..+.-++ ++.+|++++.||.|-=||..+|.+-+.. ++|+.
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred cccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence 9999999999998888889999888 5788899999999999999887532111 11110
Q ss_pred ------------------------------------------------------------ceEEEEEcCCCcEEEEEe-C
Q 012410 305 ------------------------------------------------------------TPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 305 ------------------------------------------------------------~v~sv~FspdgqllaS~s-D 323 (464)
.+.++|++||++.+|.|+ |
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence 145668899999999999 9
Q ss_pred CeEEEEeCCC-ceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-
Q 012410 324 RTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA- 399 (464)
Q Consensus 324 ~TIklWd~~G-e~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g- 399 (464)
+.|.|+.+.| +++ ..++.|... +..|+|||||.+||++-. .+.|-+||+++.+-...--+
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCceecceeee
Confidence 9999999964 543 357789887 789999999999999864 78999999999887433333
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+. .|.+|+||||.+.+||||-|-.|.+|+.
T Consensus 529 Hta----------------------------------kI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 529 HTA----------------------------------KINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eee----------------------------------eEEEEEeCCCceEEEeccccceEEEEEc
Confidence 665 8999999999999999999999999974
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=263.36 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=223.4
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceE-EEEeCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 197 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~-VaFs~pd 197 (464)
+.-|.+ .+|+.-|+.|++.+.. .+++ ++.| +++++|.=..++..++...-. +.+++.. ++|-+.+
T Consensus 5 ~ls~~l-~gH~~DVr~v~~~~~~-~i~s----~sRd------~t~~vw~~~~~~~l~~~~~~~--~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHEL-EGHKSDVRAVAVTDGV-CIIS----GSRD------GTVKVWAKKGKQYLETHAFEG--PKGFIANSICYAESD 70 (745)
T ss_pred eeEEEe-ccCccchheeEecCCe-EEee----cCCC------CceeeeeccCcccccceeccc--Ccceeeccceecccc
Confidence 345677 5577779999988865 3445 5677 899999955555443221111 2244333 6664334
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEE-------EeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIK-------IRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Va-------fs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+-.|..|+.|.+|-||.+.+...+++|. ..+|-++. +|.+-|.|+|+|-+ |+|..++.+|...||.|++
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS 148 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeee
Confidence 4468889999999999999999999997 45788887 47789999999987 8999999988899999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~ 347 (464)
.|. +++++||.|+|||||. .|++++++.||++.|+++++.|++.+ +|++ ||.||+|+++|+|+.++.||++.
T Consensus 149 l~e--~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~ghtn~-- 221 (745)
T KOG0301|consen 149 LPE--NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHGHTNF-- 221 (745)
T ss_pred cCC--CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeeccceE--
Confidence 885 5899999999999997 59999999999999999999999875 5666 99999999999999999999998
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|.++...++++.|+|+++ |+|+|||+. ++|.+.|.--+-
T Consensus 222 ---vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPtt------------------------- 260 (745)
T KOG0301|consen 222 ---VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPTT------------------------- 260 (745)
T ss_pred ---EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCcc-------------------------
Confidence 889998899999999876 999999995 499999955442
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||++.+=++|. |++|+.||.||||.
T Consensus 261 ---------siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 ---------SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ---------ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 799999999998 88999999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=240.28 Aligned_cols=280 Identities=14% Similarity=0.193 Sum_probs=222.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|.-.+.-|-||.+|+.|.+++ -| .++.+|+-..|+.+++..+|+. -+.++..+ -+.+.|.+||
T Consensus 7 ~GHERplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGty~GHtG----avW~~Did-~~s~~liTGS 71 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGTYDGHTG----AVWCCDID-WDSKHLITGS 71 (327)
T ss_pred ccCccccceEEecCCCcEEEEec----CC------CCceEEEecCCceeeeecCCCc----eEEEEEec-CCcceeeecc
Confidence 35888999999999999999944 45 7889999889999888777763 34488886 6889999999
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------------CceeEEEEEcC-------CCcEEEEEeeCCccee
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------------SHVPLKILSIE-------DGTVLKVFYHLLHRNK 264 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------------~d~tIklWdi~-------tG~~l~tl~~~~~~~~ 264 (464)
.|.++||||+++|+++.++. ...|+.+.|+++ ....|-+.|++ .-+++..+.-+-..+.
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999999999999998 568999999873 33578899988 4454544442224556
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
++-+.| -++.|++|.+||.|.+||+++|+ .++.-+-|...+..+.||||..+|+|+| |.|-||||+ +-++++|+.-
T Consensus 152 ~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 152 SALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 677777 47788888999999999999985 5566688999999999999999999999 999999999 6999999965
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-cccCCCC--eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~-~~~s~Dg--tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
- +.||+.+|+|-.+.++-|+--+.-|- ......| -.|.+++...+-+.-++||=+
T Consensus 231 e------~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG---------------- 288 (327)
T KOG0643|consen 231 E------RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG---------------- 288 (327)
T ss_pred c------ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc----------------
Confidence 4 33999999999999988864111110 1111111 134444445556667777765
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|.+|||+|||+--+||++||.|||
T Consensus 289 ------------------PINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 289 ------------------PINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ------------------CcceeEECCCCcccccCCCCceEEE
Confidence 9999999999999999999999998
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=236.34 Aligned_cols=225 Identities=15% Similarity=0.239 Sum_probs=196.2
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
+.+..|.|+ .||++..+++.|+|||||+...|.|++|.+ ++.|.+++.+. ..|+.|.+||++||++++.
T Consensus 18 gaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 445589997 999999999999999999999999998877 57899988853 5899999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC--CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t--g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
|.+|...|..|.|.+. ..-+++||.|.++|+||.++ -+.++++..-.+.|.++..+ +..|++|| |||+|.+|++
T Consensus 97 ~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred cccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence 9999899999999984 45566689999999999987 46899999888999998664 66799999 9999999994
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
|++....-||. |+++.|||||+....+|. |+||||-|-.||+.|+..+||.+.
T Consensus 174 ~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn~-------- 227 (307)
T KOG0316|consen 174 KGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKNM-------- 227 (307)
T ss_pred cceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhcccccc--------
Confidence 99887777774 899999999999999998 999999999999999999999861
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.=....|+.--..++|||+||.|.+||+
T Consensus 228 ------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12223466667778999999999999985
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=232.28 Aligned_cols=275 Identities=13% Similarity=0.202 Sum_probs=230.8
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+++..+ ..+.+.|+.|-||-||++..+ ++.| +|++||+..+|-++.+...|..|++ .++-+ .|.
T Consensus 8 kr~~~l-~~~qgaV~avryN~dGnY~lt----cGsd------rtvrLWNp~rg~liktYsghG~EVl----D~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSIL-DCAQGAVRAVRYNVDGNYCLT----CGSD------RTVRLWNPLRGALIKTYSGHGHEVL----DAALS-SDN 71 (307)
T ss_pred hhceee-cccccceEEEEEccCCCEEEE----cCCC------ceEEeecccccceeeeecCCCceee----ecccc-ccc
Confidence 456677 458889999999999999888 5566 8999999999999988888887766 55555 466
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE--------eCCCceeEEEEEcCC--CcEEEEEeeCCcceeeE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI--------RSSSHVPLKILSIED--GTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~t--G~~l~tl~~~~~~~~~V 266 (464)
..++||+.|+.+.+||++||+.++.+. ...|..|+| |.+.|.+|++||-.+ -+++++|......|.+|
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 789999999999999999999998876 467888888 447899999999764 56788888666888999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
+..+ ..|++||.|||+|.+|++.|++....-|| +|.++.||+||+..+.++ |+|++|-|- +||+|+++.||.+
T Consensus 152 ~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 152 DVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred Eecc---cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 8755 57888999999999999999998877776 689999999999999999 999999999 6999999999999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.-+ --...|+..-..++|||+ ||.|.+||+..+..+.++..|+. |
T Consensus 227 ~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~-v-------------------- 271 (307)
T KOG0316|consen 227 MEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST-V-------------------- 271 (307)
T ss_pred cee---eeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-e--------------------
Confidence 543 234567777888999986 99999999999999999988875 0
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
-|.+|+|.|--..+.++... .+.+|
T Consensus 272 ------------~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 272 ------------IVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred ------------eEEeeecccCccceeEecCC-ceece
Confidence 48999999988877776533 33344
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=247.18 Aligned_cols=347 Identities=16% Similarity=0.217 Sum_probs=263.6
Q ss_pred cchhhhhh---ccccceeeeecCCCCCcccchhhhccc-------cceEEEEeccceeehhccCC-------------eE
Q 012410 54 SNAQERFR---NMHLVEEYDTHDPKGHCPFVLPFLMKR-------TKVIEIVAARDIVFALAHSG-------------VC 110 (464)
Q Consensus 54 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~-------s~v~~~~~ag~~l~~l~~~g-------------~~ 110 (464)
-..||||- ++-.+.-||-++. +-. -..=++| +.-..++....++|+|.+.= ++
T Consensus 108 Q~~peRy~~lE~ll~R~YFDp~Ea---Y~d-ssKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~i 183 (508)
T KOG0275|consen 108 QIQPERYIRLENLLNRSYFDPREA---YGD-SSKEKRRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTI 183 (508)
T ss_pred ccChHHHHHHHHHhcccccChhhh---cCc-chHHHHHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCCCCCCcee
Confidence 46788874 4444555554443 322 1111222 33345566677788777653 23
Q ss_pred Eeee-----------cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 111 AAFS-----------RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 111 ~~~~-----------~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
-+|. ..-.+..+.+.++...-+.+..|||||++|++ ++-| .-+.+|+.-+|++...++-
T Consensus 184 DLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs----gSvD------GFiEVWny~~GKlrKDLkY 253 (508)
T KOG0275|consen 184 DLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS----GSVD------GFIEVWNYTTGKLRKDLKY 253 (508)
T ss_pred eeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee----cccc------ceeeeehhccchhhhhhhh
Confidence 3331 00012334555666666889999999999999 5555 6889999999998542221
Q ss_pred eeec----cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEE
Q 012410 180 FESE----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKI 244 (464)
Q Consensus 180 ~~~~----~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIkl 244 (464)
-..+ .-..+-++.|| -|...||||++|+.||||.+.||+||+.+. ...|.++.||. +.|.|++|
T Consensus 254 QAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred hhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEE
Confidence 1111 11223389998 799999999999999999999999998775 67899999964 68999999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCC-cEEEEE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYEN-QLFLTF 321 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~Fspdg-qllaS~ 321 (464)
--+.+|+||+.|++|..-+..+.|.+ +|..++++|.|+|||+|+..|++|+.+++. ..-.|.+|...|.+ ..++.+
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred eccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99999999999999888999999988 688999999999999999999999998863 34578888877655 345555
Q ss_pred e-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
. .+||-|-|++|+.+++|..-.---.| .-+.+.||-|.++.+.++ |+-+.-+.+.+|+.-+++.-|
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgGd--Fi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGGD--FINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCCc--eEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeecc
Confidence 5 88999999999999999732211111 346778999999987765 999999999999999999999
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. .|-.++-+|-.+.|||=|+||+++||.
T Consensus 479 Ek----------------------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EK----------------------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cc----------------------------------cccccccCcccchhhhhcccchhhhcC
Confidence 86 788899999999999999999999995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=237.55 Aligned_cols=278 Identities=11% Similarity=0.132 Sum_probs=224.9
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
..-+.++ ..|..-|.+|+.+|++..++| ++.| -...||++.+|+.......|...+. .+.|| .|
T Consensus 54 DdS~~tF-~~H~~svFavsl~P~~~l~aT----GGgD------D~AflW~~~~ge~~~eltgHKDSVt----~~~Fs-hd 117 (399)
T KOG0296|consen 54 DDSLVTF-DKHTDSVFAVSLHPNNNLVAT----GGGD------DLAFLWDISTGEFAGELTGHKDSVT----CCSFS-HD 117 (399)
T ss_pred ccceeeh-hhcCCceEEEEeCCCCceEEe----cCCC------ceEEEEEccCCcceeEecCCCCceE----EEEEc-cC
Confidence 3456677 448888999999998887777 4444 4899999999997665666654333 89998 79
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
|.+||+|.-++.|+||++.+|....++- .+.+-=+.++| +.|+.|=.|.|.++...+.+.+|..++..=.
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 9999999999999999999999887773 33333344454 6899999999999888999998888888889
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----------------------------------------------
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---------------------------------------------- 301 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---------------------------------------------- 301 (464)
|+|+ |.+++.+..|+||++||..||+.+..+.+
T Consensus 198 f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 198 FIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred ccCC-CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 9995 77888899999999999999997765541
Q ss_pred -----CC---CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 302 -----EF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 302 -----h~---~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
|. ..|.++.||..=.+.|+|+ ||+|.|||..-.-++..--|... |..+-|-+ -++|+++|.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~---- 346 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACA---- 346 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeecc----
Confidence 00 1122334455667899999 99999999854444555557666 77888988 677888886
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
+|+||+||..||+|+.++.||+. .|...+++||++.++|
T Consensus 347 -------~g~v~~wDaRtG~l~~~y~GH~~----------------------------------~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 347 -------NGKVRQWDARTGQLKFTYTGHQM----------------------------------GILDFALSPQKRLVVT 385 (399)
T ss_pred -------CceEEeeeccccceEEEEecCch----------------------------------heeEEEEcCCCcEEEE
Confidence 99999999999999999999997 8999999999999999
Q ss_pred eeCCCcEEecc
Q 012410 453 GNRHGLVHVWS 463 (464)
Q Consensus 453 gs~DgtVrlWd 463 (464)
+|.|++.+|.+
T Consensus 386 ~s~D~~a~VF~ 396 (399)
T KOG0296|consen 386 VSDDNTALVFE 396 (399)
T ss_pred ecCCCeEEEEe
Confidence 99999999875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=254.95 Aligned_cols=220 Identities=10% Similarity=0.078 Sum_probs=176.4
Q ss_pred EecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCc--------EEEEEeeCCcce
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGT--------VLKVFYHLLHRN 263 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~--------~l~tl~~~~~~~ 263 (464)
.|+.++.|+||++....++.++. ...|.+|+|+| +.|++|+|||+.++. ++.++.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 37789999999988877777776 46899999987 378999999998753 345677777889
Q ss_pred eeEEEEccCCCeE-EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 264 KKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 264 ~~V~F~~~~~~~l-la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..|+|+|. +..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||. +|+++.++.
T Consensus 129 ~sVaf~P~-g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPM-NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEECCC-CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999995 4455 467899999999999999887776 457899999999999999999 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
+|...+....++...|+||+++|+|++.+ ...+++|+|||+.+ ++++.++..+.. +
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~-~--------------- 263 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA-S--------------- 263 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC-c---------------
Confidence 99875332224556678999999998761 11246899999984 788887755442 0
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.....+++|..+++|+.|++||+|+
T Consensus 264 ----------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 264 ----------------APLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ----------------cceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 0445555667799999999999999997
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=238.82 Aligned_cols=270 Identities=12% Similarity=0.150 Sum_probs=226.8
Q ss_pred cCCCceEEEEEEee---CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 126 VSPDEVIRSLFYNK---NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~---~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
-+|.-.|-.++||| +|-.||++|.++ .-.|.+=.+|+.+++|.+|.. -+.+...+ .|...-|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~----------~pmlr~g~tgdwigtfeghkg----avw~~~l~-~na~~aa 75 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDG----------KPMLRNGDTGDWIGTFEGHKG----AVWSATLN-KNATRAA 75 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCC----------CchhccCCCCCcEEeeeccCc----ceeeeecC-chhhhhh
Confidence 56999999999995 899999977443 334556678888888887774 23366665 6888889
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
|++.|-|.||||.-||..|+++. .+-|.++||+.+ .++-++|+|++.- ...+.+.+|...++.|-|-. .
T Consensus 76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-e 154 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-E 154 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-c
Confidence 99999999999999999999998 466899999864 5567889888642 34566777778899999976 3
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCe
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNT 351 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v 351 (464)
+..||++.+|+||||||.+||..+++|... +.|.++-.++||++|..+--++|+.||. +=++|++++- -|+|
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~------P~nV 227 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM------PCNV 227 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccC------cccc
Confidence 578888899999999999999999988754 5799999999999887777889999998 6677776642 2679
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCcccccccccccccc
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 430 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (464)
.+..++|+...+++|+. |..+.-+|..||+-+..+ +||-+
T Consensus 228 ~SASL~P~k~~fVaGge-----------d~~~~kfDy~TgeEi~~~nkgh~g---------------------------- 268 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGE-----------DFKVYKFDYNTGEEIGSYNKGHFG---------------------------- 268 (334)
T ss_pred ccccccCCCceEEecCc-----------ceEEEEEeccCCceeeecccCCCC----------------------------
Confidence 99999999999999876 999999999999999886 88876
Q ss_pred ccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 431 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 431 ~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|.|||||..-||||+|||||||.
T Consensus 269 ------pVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 269 ------PVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ------ceEEEEECCCCceeeccCCCceEEEEE
Confidence 999999999999999999999999996
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=219.19 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=189.0
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s- 237 (464)
.++++|++.+|++...+... ..+..++|+ |||+.| ++++.|++|++||+.+++.+.++. ...+..++|+|+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~-----~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG-----QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEEEEECC-----CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 69999999999875433321 234579997 899876 677889999999999999988776 345677888763
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC-CeEEEEECCCCcEEEEcccCCCceEE
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D-~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
.+++|++||+++++++..+... .....++|+| ++..+++++.+ ..+.+||..+++++...... ..+..
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~ 161 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRF 161 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccE
Confidence 4689999999999999888743 4457899988 45666666655 46778899999887654333 35678
Q ss_pred EEEcCCCcEEE-EEe-CCeEEEEeC-CCceEEEeccCCCCc-CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 309 FIFLYENQLFL-TFR-NRTVAVWNF-RGELVTSFEDHLLWH-PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 309 v~Fspdgqlla-S~s-D~TIklWd~-~Ge~l~tl~gH~~~~-~~~-~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
++|+|||+.|+ ++. |++|++||. +|++++++..+.... +.+ ....++|+|||++++.+.. .+++|
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~~i 231 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PANRV 231 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCCeE
Confidence 99999999874 555 999999999 699988776442110 000 0236889999998655432 26789
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEec
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVW 462 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlW 462 (464)
.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+++|++|
T Consensus 232 ~v~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQ-----------------------------------RVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred EEEECCCCcEEEEEEeCC-----------------------------------CcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 999999999987764322 678999999999999875 69999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 277 d~ 278 (300)
T TIGR03866 277 DV 278 (300)
T ss_pred EC
Confidence 84
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=238.17 Aligned_cols=229 Identities=15% Similarity=0.237 Sum_probs=195.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----------CCCEeEEEEeC--------CCceeEEEEEc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIRS--------SSHVPLKILSI 247 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----------~~~V~~Vafs~--------s~d~tIklWdi 247 (464)
.|+.+..|| |||++|+|||-|+-|.|||.-+|++-+.|. +..|.++.||- +.|+.||+|-|
T Consensus 214 Sh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 677789998 999999999999999999999999876554 46799999974 58899999999
Q ss_pred CCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 248 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
+||+||+.|. .|...+.++.|+. +|.++|++|.|.|+||--+.+|+|++.++||+..|..+.|++||..++|+| |+|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 9999999998 5668899999998 689999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
||+|+. +++|+.||+--..- ..|++|..-|-. ..++-+-. ..||.|-++ .||.++++..-..
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNr-----------sntv~imn~-qGQvVrsfsSGkR- 435 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCNR-----------SNTVYIMNM-QGQVVRSFSSGKR- 435 (508)
T ss_pred EEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEcC-----------CCeEEEEec-cceEEeeeccCCc-
Confidence 999999 79999999855432 238898887743 34444333 789999996 8999998843221
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.|. +--+...||-|..+|+.++|+.+..+
T Consensus 436 --------EgG----------------------dFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 436 --------EGG----------------------DFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred --------cCC----------------------ceEEEEecCCCcEEEEEccCcEEEEE
Confidence 111 44567899999999999999988765
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=246.40 Aligned_cols=257 Identities=13% Similarity=0.133 Sum_probs=212.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|.-|.+++++|...||+ .+.-...++..+|+..|+++.++++|..++| +..+ ..||+|+....... .+
T Consensus 108 GRRLltgs~SGEFtLWN-g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~g------G~iKyWqpnmnnVk-~~ 175 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWN-GTSFNFETILQAHDSPVRTMKWSHNGTWMIS----GDKG------GMIKYWQPNMNNVK-II 175 (464)
T ss_pred CceeEeecccccEEEec-CceeeHHHHhhhhcccceeEEEccCCCEEEE----cCCC------ceEEecccchhhhH-Hh
Confidence 88999999999999997 5555555677899999999999999999999 5555 89999996544432 22
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEc
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSI 247 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi 247 (464)
+.+..+.+ ..|||| |+....+++|.|++|||||...++.-..|. +-.|.+|++.| +.|.+||+||.
T Consensus 176 ~ahh~eaI---RdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 176 QAHHAEAI---RDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHhhhhhh---heeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 23332322 389998 677778889999999999998887765555 44588888766 68889999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T 325 (464)
.+|+||.|+.+|.+.|..|.|.+. +..||++|.|.++|++|+++-+.+.++++|...|++++++|=.. +|.|++ |+.
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 999999999988899999999995 47888899999999999999999999999999999999998554 666677 999
Q ss_pred EEEEeCC-CceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 326 VAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 326 IklWd~~-Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|..|.+. -+.+-.+ ..|..- ||+++++|=|.+|++||. |.|+|.|.
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~ 378 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWT 378 (464)
T ss_pred eEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceeeec
Confidence 9999985 3444333 367665 899999999999999986 99999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=244.14 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=177.6
Q ss_pred ccceeeh------hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 97 ARDIVFA------LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 97 ag~~l~~------l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
.++++|. ....|++++|+..+...+..+ .+|...|.++.|+|+ +..||+ ++.| ++|+||+++
T Consensus 37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLAS----gS~D------gtIrIWDi~ 105 (568)
T PTZ00420 37 SSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILAS----GSED------LTIRVWEIP 105 (568)
T ss_pred CCCeEEEEEEcCCCCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEE----EeCC------CeEEEEECC
Confidence 3555554 345679999998888888888 458889999999997 788888 4566 799999998
Q ss_pred cCCCC-Cc--cccee-eccccCceEEEEeCCCCcE-EEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEE
Q 012410 170 RGKPD-SG--FALFE-SESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 170 ~G~~~-~~--~~l~~-~~~~~~~~~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIkl 244 (464)
++... .. .++.. ..+...+.+|+|+ |+|.. ||+|+.|++|+|||+.+++.+.++.
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------- 165 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------------------- 165 (568)
T ss_pred CCCccccccccceEEeecCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-------------------
Confidence 75421 10 01111 1133445689997 88875 6899999999999998776544331
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-----EEEEcCCCcEEE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-----AFIFLYENQLFL 319 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-----sv~Fspdgqlla 319 (464)
++ ..+.+++|++ ++..|++++.|++|+|||+++++++.++.+|...+. ...|++|+++|+
T Consensus 166 -------------~~-~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 166 -------------MP-KKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred -------------cC-CcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 11 3456777877 355666678999999999999999999999986543 334679999999
Q ss_pred EEe-C----CeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 320 TFR-N----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 320 S~s-D----~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
|++ | ++|+|||++ +++++++..+...- .+...+.+++|.++++|+. |++||+|++.+|.
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~---~L~p~~D~~tg~l~lsGkG-----------D~tIr~~e~~~~~ 296 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASA---PLIPHYDESTGLIYLIGKG-----------DGNCRYYQHSLGS 296 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEEEecCCcc---ceEEeeeCCCCCEEEEEEC-----------CCeEEEEEccCCc
Confidence 977 6 489999994 78888765444321 1455677888999999986 9999999998875
Q ss_pred EEEEEccC
Q 012410 393 CLAKINAT 400 (464)
Q Consensus 393 cl~tl~gh 400 (464)
+..|..+
T Consensus 297 -~~~l~~~ 303 (568)
T PTZ00420 297 -IRKVNEY 303 (568)
T ss_pred -EEeeccc
Confidence 4555443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=245.19 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=167.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEE---EEeeCCcceeeE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLK---VFYHLLHRNKKV 266 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~---tl~~~~~~~~~V 266 (464)
..+++ +||..+++++.+.....|+...|.++.. .-++|+... .|.+|...|..|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~----------------------~~~~G~~~~~~~~l~GH~~~V~~v 81 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLK----------------------HTDYGKLASNPPILLGQEGPIIDV 81 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEee----------------------ccccccCCCCCceEeCCCCCEEEE
Confidence 44565 7888888999999999999765543222 222343322 356677889999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCC-------cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceE
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNA-------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg-------~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l 336 (464)
+|+|.++..|++++.|++|+|||+.++ +++.++.+|...|.+++|+|++ ++|||++ |++|+|||+ +|+++
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 999955667888999999999999875 3678899999999999999986 7999999 999999999 69999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
.++.+|... |++++|+|||++||++|. |++|+|||+.+|+++.++.+|...
T Consensus 162 ~~l~~h~~~-----V~sla~spdG~lLatgs~-----------Dg~IrIwD~rsg~~v~tl~~H~~~------------- 212 (493)
T PTZ00421 162 EVIKCHSDQ-----ITSLEWNLDGSLLCTTSK-----------DKKLNIIDPRDGTIVSSVEAHASA------------- 212 (493)
T ss_pred EEEcCCCCc-----eEEEEEECCCCEEEEecC-----------CCEEEEEECCCCcEEEEEecCCCC-------------
Confidence 999999987 899999999999999987 999999999999999999999750
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEee----CCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN----RHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs----~DgtVrlWd~ 464 (464)
.+..+.|.|++..|++++ .|++|+|||.
T Consensus 213 --------------------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 213 --------------------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred --------------------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 344678899988887654 5899999984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=222.47 Aligned_cols=227 Identities=16% Similarity=0.266 Sum_probs=191.8
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEe----------CCCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIR----------SSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs----------~s~d~tIklWdi~tG~~l 253 (464)
+++.+++|+ +||..|+++++|.+++|+|..+|++++++.. ..|.-+.|. ...|.+||.+++.+.+++
T Consensus 15 ~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 567799998 8999999999999999999999999999984 478888882 136889999999999999
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
+.|.||..+|.++.-+|- ++..|++|.|+|||+||+++.+|...+.-- ....+||.|+|-+||.+. ...|||+|++
T Consensus 94 RYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 999998899999999995 589999999999999999999998765532 234578999999999999 5599999973
Q ss_pred ---CceEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 333 ---GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 333 ---Ge~l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
...-++|. .+..| +.+-|||||++|.-+.. .+-+.|-|.-+|..+.++.+|.+.
T Consensus 171 s~dkgPF~tf~i~~~~~~ew------~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~-- 231 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEW------TDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA-- 231 (311)
T ss_pred ccCCCCceeEccCCCCccce------eeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC--
Confidence 44555554 34444 78999999999988765 789999999999999999999860
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++. . -+..|+|||+.+.+|+.||+|++|+.
T Consensus 232 -------~~~---------------------~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 -------GNL---------------------P-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -------CCc---------------------c-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 100 2 35789999999999999999999973
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=248.96 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=185.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ec--CCCEeE-EEEe---------CCCceeEEEEEcCCCcEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS--DKHVQE-IKIR---------SSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~--~~~V~~-Vafs---------~s~d~tIklWdi~tG~~l~t 255 (464)
.|++. ++..++++|.|+|+|||+-+..+.+.+ +. .+.|.. +.+- .+.|.+|-+|...+++.+.+
T Consensus 19 ~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 19 AVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred eeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 67774 555788999999999999777666543 33 234444 6664 35889999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
|.+|...|-+++--+ .+.+++||.|.|+|+| +.|+|..++.||+..||+|++.|++ .++||| |+|||+|.- |+
T Consensus 97 LkgH~snVC~ls~~~--~~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGE--DGTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GT 170 (745)
T ss_pred hhccccceeeeecCC--cCceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cc
Confidence 998878888887544 2668889999999999 5799999999999999999999999 889999 999999994 99
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
+++||.||+.- |+.+++=|++.+| |++ +||.||+|++ +|+||....||++
T Consensus 171 ~l~tf~gHtD~-----VRgL~vl~~~~fl-Scs-----------NDg~Ir~w~~-~ge~l~~~~ghtn------------ 220 (745)
T KOG0301|consen 171 LLKTFSGHTDC-----VRGLAVLDDSHFL-SCS-----------NDGSIRLWDL-DGEVLLEMHGHTN------------ 220 (745)
T ss_pred hhhhhccchhh-----eeeeEEecCCCeE-eec-----------CCceEEEEec-cCceeeeeeccce------------
Confidence 99999999986 8999999987765 555 4999999997 9999999999998
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|.+++..++++.|+|.++|+|+|+|+
T Consensus 221 ----------------------~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 221 ----------------------FVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ----------------------EEEEEEecCCCCeEEEecCCceEEEee
Confidence 899999999999999999999999996
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=249.38 Aligned_cols=223 Identities=14% Similarity=0.228 Sum_probs=194.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-e-----EEEEec--CCCEeEEEE--------eCCCceeEEEEEcCCC--c
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-T-----MLYSIS--DKHVQEIKI--------RSSSHVPLKILSIEDG--T 251 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~-----~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~tG--~ 251 (464)
.+.-|.|+|++|-+|+.|++||+|++..- . ++.++. .+||.+++. |.++|.|||+|+.+.+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44455689999999999999999997632 2 344444 467777665 6789999999999988 7
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEE--------Ecc-cCCCceEEEEEcCCCcEEEE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LME--------VSR-TEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~--------~l~-gh~~~v~sv~FspdgqllaS 320 (464)
|+.|+..|..-|++++.+++.++..++||-|+.|.|||+.+|. ++. .+. |+...++++|-.+.|.+|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 9999997778999999988778888889999999999999983 332 234 88899999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|+ .+-+++||- +++-+..|.||+.- |..+-.++||..++|+|. ||||||||+...+|++|+.
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred cCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeeeEE
Confidence 99 999999999 69999999999975 899999999999999985 9999999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.|.. .||++.-+|+=+.+|||++||.|..=
T Consensus 253 vH~e----------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 253 VHKE----------------------------------GVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred eccC----------------------------------ceEEEeeCCCcceEEecCCCCcEEec
Confidence 9997 89999999999999999999998753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=236.62 Aligned_cols=264 Identities=17% Similarity=0.204 Sum_probs=214.5
Q ss_pred CCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
|+ .|-++.|||.-- -+|++| + -.+-|.+..+-....++.-|...+. ++.|- .||++||.|..
T Consensus 26 ~~-~vssl~fsp~~P~d~aVt~---S--------~rvqly~~~~~~~~k~~srFk~~v~----s~~fR-~DG~LlaaGD~ 88 (487)
T KOG0310|consen 26 HN-SVSSLCFSPKHPYDFAVTS---S--------VRVQLYSSVTRSVRKTFSRFKDVVY----SVDFR-SDGRLLAAGDE 88 (487)
T ss_pred cC-cceeEecCCCCCCceEEec---c--------cEEEEEecchhhhhhhHHhhcccee----EEEee-cCCeEEEccCC
Confidence 44 499999999432 234433 2 3466666666666666666664322 89997 79999999999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
.|-|||+|+++-.-|..+. +..|..+.|+| ++|+.+|+||+.++.+...+.+|..-|++.+|+|..+..
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9999999988755565554 67899999977 588999999999999877888888999999999974445
Q ss_pred EEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-C-CceEEEeccCCCCcCCCCee
Q 012410 276 LLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-R-GELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+++||.||+||+||.++. ..+..+ .|..+|.++.|.|.|++|||++-..|||||+ + |+++..+..|.-- |.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt-----VT 242 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT-----VT 242 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce-----EE
Confidence 566899999999999997 444444 4667999999999999999999889999999 4 6777777778776 89
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++.+..|+..|.|||- |+-||++|+.+-|-+..+.= .+
T Consensus 243 cL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~-~~------------------------------ 280 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKY-PG------------------------------ 280 (487)
T ss_pred EEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeec-cc------------------------------
Confidence 9999999999999987 99999999888787776632 22
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
+|.+++.|||++++|-|-.||++-
T Consensus 281 ----pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 281 ----PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ----ceeeEEecCCCceEEEecccceee
Confidence 899999999999999999999874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=230.00 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=196.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE----
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI---- 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf---- 234 (464)
..+.|+|++.=.+-+ ++....+-.|+.+|.-. ++.+.||++|++++|||+ .|++.+++. .+.|.+++.
T Consensus 83 ~~leIEYv~~~~aP~--pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 83 EILEIEYVEAITAPK--PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred heeEEEEEEecCCCC--ccccccchhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecC
Confidence 588889985433322 22222233666677653 689999999999999997 578777665 567877776
Q ss_pred -------eCCCceeEEEEEcCCCcEEEEE----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-----------
Q 012410 235 -------RSSSHVPLKILSIEDGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN----------- 292 (464)
Q Consensus 235 -------s~s~d~tIklWdi~tG~~l~tl----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t----------- 292 (464)
+++.|+|++||-++.|+..-+. .+|-..|-+|+-.+ ++.++++||.|.+|+||++.+
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccch
Confidence 3479999999999988755332 26666788888777 577888899999999999322
Q ss_pred --------------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE
Q 012410 293 --------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI 356 (464)
Q Consensus 293 --------------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf 356 (464)
+..+-++.||...|.+|.|++ ...+.|+| |.|||.||+ +|.++.++.+... .++|..
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i~~ 308 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCISY 308 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEeec
Confidence 235668999999999999999 55677888 999999999 7999999988765 689999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+|..++|||||. |.-|||||..+|. -..+|.||++
T Consensus 309 ~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n------------------------------- 346 (423)
T KOG0313|consen 309 SPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN------------------------------- 346 (423)
T ss_pred ccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-------------------------------
Confidence 999999999986 9999999998864 3578999998
Q ss_pred cccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
+|.+|-++|.. ..|+|||.|+++||||.
T Consensus 347 ---wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 ---WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ---hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 99999999966 46899999999999983
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-27 Score=236.73 Aligned_cols=256 Identities=13% Similarity=0.150 Sum_probs=213.4
Q ss_pred ceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 99 DIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+.+|+...+..|++|++.-++ .+.+|-++. ..|.++.|-++|..++.+ +.| ...+||++..++...+
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAa----s~d------~~~r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAA----SND------KNLRLWNVDSLRLRHT 256 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEee----cCC------Cceeeeeccchhhhhh
Confidence 889999999999999988777 677775544 459999999999999984 455 6899999999999888
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE------eCCCceeEEEEEcCC
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI------RSSSHVPLKILSIED 249 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf------s~s~d~tIklWdi~t 249 (464)
+.+|+.++. ++.|. -....++||+.|.|||+||+..+.|.+++- ...+.+|.. |.-.|++|++||+.+
T Consensus 257 LsGHtdkVt----~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs 331 (459)
T KOG0288|consen 257 LSGHTDKVT----AAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRS 331 (459)
T ss_pred hccccccee----eehhh-ccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccC
Confidence 888876544 78886 333348999999999999999999998754 444444444 455889999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC----CceEEEEEcCCCcEEEEEe-CC
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~----~~v~sv~FspdgqllaS~s-D~ 324 (464)
+.+..+...+ +.+.+|+-++ ++-.+|+.+.|.|+++.|+++.+..+++.... .-.+.+.||||+.++|+|| ||
T Consensus 332 ~~~~~sv~~g-g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 332 ADKTRSVPLG-GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred CceeeEeecC-cceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence 9999998854 6899999887 56788889999999999999999988876532 1266788999999999999 99
Q ss_pred eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 325 TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 325 TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
.|+||++ +|+|...+...... ..|.+++|+|-|..|+|+++ ++.+.||
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~lW 458 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTLW 458 (459)
T ss_pred cEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEec
Confidence 9999999 79999888765542 12899999999999999987 9999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=225.43 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=208.5
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec------------cCCCCCcccceee--ccc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFES--ESL 185 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~------------~G~~~~~~~l~~~--~~~ 185 (464)
.-+++ -.|....|.-+|||||..+|+ ++.| -.|||-|++ .|+..+..++... +|.
T Consensus 104 Et~yl-t~HK~~cR~aafs~DG~lvAT----GsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYL-TSHKSPCRAAAFSPDGSLVAT----GSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEE-eecccceeeeeeCCCCcEEEc----cCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 45677 458899999999999999999 5555 577788775 2333322232221 123
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
.-+..++|. |-..+|+|||.|+||||||...-.- -+-.+.|+. .+.+++
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~sa-----------------------------KrA~K~~qd-~~~vrs 221 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSA-----------------------------KRAFKVFQD-TEPVRS 221 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHH-----------------------------HHHHHHhhc-cceeee
Confidence 334479996 8999999999999999999653111 011122222 267788
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE---cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~---l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
+.|.| .|+.||+|-+--+++|+|+.|-||.-. -.+|+..|..|-+|+.|++.+|+| ||.|||||- .++|+.|+.
T Consensus 222 iSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 222 ISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred EeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence 88888 588999999999999999999999864 357899999999999999999999 999999996 899999997
Q ss_pred c-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC-------------CCCc
Q 012410 341 D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC-------------SPKV 406 (464)
Q Consensus 341 g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~-------------~~~~ 406 (464)
. |... .|-+..|+.||++|.|.++ |.+||||.|.||+||.+..|-.. +-..
T Consensus 301 ~AH~gs----evcSa~Ftkn~kyiLsSG~-----------DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd 365 (430)
T KOG0640|consen 301 NAHGGS----EVCSAVFTKNGKYILSSGK-----------DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED 365 (430)
T ss_pred hhcCCc----eeeeEEEccCCeEEeecCC-----------cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc
Confidence 4 4433 4889999999999999988 99999999999999999877521 1112
Q ss_pred ccccCCCCCCccccccccccccccccccc------cCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEAL------EDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+..+++-++--+ .|+-+.....+| ..|..+.-||.+.-..++|.|-.+|.|-
T Consensus 366 yVl~pDEas~slc----sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 366 YVLFPDEASNSLC----SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred eEEccccccCcee----eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 2333333221111 222222222222 2788899999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=225.61 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=215.7
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCC-cccceeeccccCceEEEEeCCCCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDS-GFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+..=..|...+.=.-|||.|.++|+ +..- ..++|||... ...++ .++.+. +.+..++++ +||+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiAS----GD~s------G~vRIWdtt~~~hiLKnef~v~a----G~I~Di~Wd-~ds~ 116 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIAS----GDVS------GKVRIWDTTQKEHILKNEFQVLA----GPIKDISWD-FDSK 116 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEee----cCCc------CcEEEEeccCcceeeeeeeeecc----cccccceeC-CCCc
Confidence 3333568999999999999999888 3333 6899999643 22221 233332 334479997 8999
Q ss_pred EEEEecCCC----cEEEEeCCCCeEEEEe--cCCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 200 VLTYSAQDS----IYKVFDLKNYTMLYSI--SDKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 200 ~LaSgs~D~----tiKlWdl~tg~~l~tl--~~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|+..++-+ -+-+|| +|+-+-.+ +...|.+++|.| ++|.+|-+++=.-=+.-.++.+|..-|.
T Consensus 117 RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 888665532 355676 66655444 456899999966 5889999876443333446666667889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|.|+|+ ++++++.+.|++|.|+|=.+|+.+..+. +|...|.+++||||++.|||.| |.|+||||+ +++|+++|
T Consensus 195 ~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 9999994 8888889999999999999999999887 8999999999999999999999 999999999 69999988
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.--.. +.|..| .+-+. ++.|++-|- +|+|++.|...+..+++++||+.
T Consensus 274 ~~~~~-v~dqqv-G~lWq--kd~lItVSl-----------~G~in~ln~~d~~~~~~i~GHnK----------------- 321 (603)
T KOG0318|consen 274 PMGST-VEDQQV-GCLWQ--KDHLITVSL-----------SGTINYLNPSDPSVLKVISGHNK----------------- 321 (603)
T ss_pred ecCCc-hhceEE-EEEEe--CCeEEEEEc-----------CcEEEEecccCCChhheeccccc-----------------
Confidence 63332 222222 33344 788888886 89999999999999999999996
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+.+|||++|+|||.||.|.=|+
T Consensus 322 -----------------~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 322 -----------------SITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred -----------------ceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 899999999999999999999999997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=241.18 Aligned_cols=226 Identities=15% Similarity=0.243 Sum_probs=188.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++.|.+-.|.+|+||+.|+.||||++.+ +.|++|+. ...|.+++|++ +.|.+|||||+|||+|+..|..
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL 298 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec
Confidence 7888734999999999999999999997 99999887 46799999965 6899999999999999999973
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
. +....|-|.|++...+|+|+.|+.|+.||+++|+.++....|-..+.++.|-|+|+.|+|++ |++|+||+. .+-.+
T Consensus 299 ~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 299 D-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred C-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 2 56699999997557888899999999999999999999999999999999999999999999 999999998 46555
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccCCCCCCcccccCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh~~~~~~~~~~~~~ 413 (464)
+-...+..- . ..+|..+|+|.+++.=|. |..|-|..+..- .--+.++||.. .+
T Consensus 378 k~i~~~~~h-s---mP~~~~~P~~~~~~aQs~-----------dN~i~ifs~~~~~r~nkkK~feGh~v--aG------- 433 (503)
T KOG0282|consen 378 KNIADPEMH-T---MPCLTLHPNGKWFAAQSM-----------DNYIAIFSTVPPFRLNKKKRFEGHSV--AG------- 433 (503)
T ss_pred hhhcchhhc-c---CcceecCCCCCeehhhcc-----------CceEEEEecccccccCHhhhhcceec--cC-------
Confidence 433333221 1 347899999999998776 899999875331 11245677763 11
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 414 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.=..|.|||||.+|+||+.||.|-+||
T Consensus 434 -----------------------ys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 434 -----------------------YSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred -----------------------ceeeEEEcCCCCeEEeecCCccEEEee
Confidence 335699999999999999999999998
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=220.06 Aligned_cols=272 Identities=13% Similarity=0.155 Sum_probs=211.9
Q ss_pred EEEEEeeCCC-EEEE--EEeecCCCCcccce-eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 133 RSLFYNKNND-SLIT--VSVYASDNFSSLKC-RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 133 ~Sv~fs~~g~-~l~s--vSa~~sddfs~L~~-~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+||-|||.=+ .||+ +..|+ |-| ..+.|-++..++-+....-+..+ .-...|++++....+++.++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yG------l~G~G~L~ile~~~~~gi~e~~s~d~~--D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYG------LAGNGRLFILEVTDPKGIQECQSYDTE--DGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcc------cccCceEEEEecCCCCCeEEEEeeecc--cceeEeeecCCCcceEEEEecCc
Confidence 5888998632 2333 23332 333 67777776544433222222211 11126999977788899999999
Q ss_pred cEEEEeCCC-CeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 209 IYKVFDLKN-YTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 209 tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
++||||+.- -..+..++ ...|++|..++ +-|+|||||+-.-++-++||++|...+..++|+|..++-+
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 999999642 23455554 45688887754 6899999999999999999998878889999999888888
Q ss_pred EEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEc-CCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCe
Q 012410 277 LVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNT 351 (464)
Q Consensus 277 la~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fs-pdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v 351 (464)
++.|.|++++|||++. |+.+. +..|...+.+..|+ ++-.+++|++ |++||.||++ -..+..|.||... |
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A-----V 237 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA-----V 237 (311)
T ss_pred EEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE-----E
Confidence 8899999999999988 55544 78888889999999 8889999999 9999999994 6788899999987 8
Q ss_pred eEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 352 NNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 352 ~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
+.|.|||- -.+|||+|- |=|+||||.+. .-|+.+..-|+.
T Consensus 238 Rkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~HtE--------------------------- 279 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHTE--------------------------- 279 (311)
T ss_pred EEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccce---------------------------
Confidence 99999996 568899887 99999999984 467788888876
Q ss_pred cccccccCEEEEEEcC-CCCEEEEeeCCCcEEecc
Q 012410 430 TVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 430 ~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd 463 (464)
-|..+.||+ ++..+|+.+-|+++.||+
T Consensus 280 -------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 -------FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -------EEeccccccccCceeeecccccceeeec
Confidence 566677776 667899999999999997
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=234.36 Aligned_cols=249 Identities=14% Similarity=0.119 Sum_probs=214.4
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS- 236 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~- 236 (464)
..+.||+-.+|+.. .++..+ ...+.+|.++ ++|++||-|-.+++|.|||+++.+.+.++. ...|-+++.+.
T Consensus 197 ~~vylW~~~s~~v~---~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~ 271 (484)
T KOG0305|consen 197 QSVYLWSASSGSVT---ELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS 271 (484)
T ss_pred ceEEEEecCCCceE---EeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc
Confidence 68999999999853 344432 3556699997 899999999999999999999988887654 45788888854
Q ss_pred -----CCceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 237 -----SSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 237 -----s~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
+.|+.|..+|+..++.+.. +.+|.+.|..+.|++ ++.++++|+.|..+.|||..+-+.+..+.+|...|.+++
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 6889999999999888877 778889999999999 466777789999999999988899999999999999999
Q ss_pred EcC-CCcEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 311 FLY-ENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 311 Fsp-dgqllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
|+| ...+||+|+ |++||+||. +|+++.+...... |-+|.|+|..+-|+++-- =.+.-|.|
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------VcsL~Wsk~~kEi~sthG---------~s~n~i~l 415 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------VCSLIWSKKYKELLSTHG---------YSENQITL 415 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------eeeEEEcCCCCEEEEecC---------CCCCcEEE
Confidence 997 567888875 999999999 7999988765543 789999999977776542 12678999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+..+-+.++.+.||+. .|..++.||||.+|+||+.|.|+|+|+.
T Consensus 416 w~~ps~~~~~~l~gH~~----------------------------------RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTS----------------------------------RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EeccccceeeeecCCcc----------------------------------eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 99999999999999997 8999999999999999999999999973
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=234.74 Aligned_cols=272 Identities=12% Similarity=0.139 Sum_probs=229.4
Q ss_pred hhhhccccceEEEEeccceeehhcc-CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 012410 82 LPFLMKRTKVIEIVAARDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 82 l~~l~~~s~v~~~~~ag~~l~~l~~-~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~ 160 (464)
+..+--|+.|+.+-++.+=+++++. .+-+++|++.+++++.++ ..+.+-+.+|=|.+.++++ |...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi---~~~y~l~~~Fvpgd~~Iv~----G~k~------ 433 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI---TCGYILASKFVPGDRYIVL----GTKN------ 433 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe---ccccEEEEEecCCCceEEE----eccC------
Confidence 4455567788888888554444444 558999999999999999 4457999999998887777 4455
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-----CCeE---E-----EEec-C
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTM---L-----YSIS-D 226 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-----tg~~---l-----~tl~-~ 226 (464)
+.+-+.|++.+.+..+.+-|+ +-+++++-+ |||+-+++||.|+|||+||.+ .|+. | ++|. .
T Consensus 434 Gel~vfdlaS~~l~Eti~AHd----gaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHD----GAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred CceEEEEeehhhhhhhhhccc----cceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 678889999988877766555 344589997 899999999999999999965 1322 1 2333 5
Q ss_pred CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 227 KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 227 ~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
+.|.+|++||+ -|.||||+-+.|=+.--+|.+|-=+|.+++.+|+ ...+++||.|++||||-+.=|.|.+.
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-cCeEEeccCCCceEEeccccchhhhh
Confidence 78999999996 6789999999998888888888789999999885 45566689999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 299 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 299 l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
+-+|.+.|.+|-|.|+..+|-|++ |+.||-||- .=+++++|.||..- ||.++.+|+|.+++|+|.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh-------- 654 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH-------- 654 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC--------
Confidence 999999999999999999999999 999999998 58999999999987 899999999999999987
Q ss_pred cCCCCeEEEEeC
Q 012410 377 EGSAGSINVSSI 388 (464)
Q Consensus 377 ~s~DgtIklWdi 388 (464)
|.+||+|.-
T Consensus 655 ---D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ---DKSIRLWER 663 (888)
T ss_pred ---CceeEeeec
Confidence 999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=217.88 Aligned_cols=267 Identities=16% Similarity=0.135 Sum_probs=219.0
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|...-|+ |.+||++.-+|.+++|++.+|..-+.+-..-++ |-=+++.|-+.+|+. ++.| ..+..|
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d-ieWl~WHp~a~illA----G~~D------GsvWmw 175 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED-IEWLKWHPRAHILLA----GSTD------GSVWMW 175 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCc-eEEEEecccccEEEe----ecCC------CcEEEE
Confidence 467888887 999999999999999999999999988544444 555999999999887 7777 899999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-----------CCEeEEEEe
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----------KHVQEIKIR 235 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----------~~V~~Vafs 235 (464)
.|..+..-+.+++++.. ...=+|. ||||.++.+..|+||++||++||+.+..+.. +..-+..+.
T Consensus 176 ~ip~~~~~kv~~Gh~~~----ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 176 QIPSQALCKVMSGHNSP----CTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred ECCCcceeeEecCCCCC----ccccccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99885444445554432 2256787 8999999999999999999999999988761 223445556
Q ss_pred CCCceeEEEEEcCCCcEEEEEee--------CCcceeeEEEEccCCC-eEE-EEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYH--------LLHRNKKVDFIEQFNE-KLL-VKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~--------~~~~~~~V~F~~~~~~-~ll-a~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
.+.++++++-+..+|+++..+++ +.+.+.+|.|+|.... .|+ +|+-||+|-|||..+..+.+... |...
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~ 329 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG 329 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCc
Confidence 67899999999999999988873 3455688888885322 233 47899999999999988887777 4467
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|..+-|.+ ..+|++++ |++|++||. +|+|+.++.||+.. |...+++||+++++++|. |++.
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s~-----------D~~a 392 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVSD-----------DNTA 392 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEecC-----------CCeE
Confidence 99999999 67777888 999999999 69999999999998 788999999999999987 9999
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
+++++.
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=207.35 Aligned_cols=268 Identities=10% Similarity=0.132 Sum_probs=220.3
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCCCCcEEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTY 203 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~pdGk~LaS 203 (464)
+|...|.||+||-+|..|++ ++.| +++++|.+..++... +....+|.+ -++.++++...+|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~las----gs~d------ktv~v~n~e~~r~~~-----~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLAS----GSFD------KTVSVWNLERDRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhhhcceEEEEcccCceeee----cccC------CceEEEEecchhhhh-----hhcccCCCcchhhheeCCCCCcceEE
Confidence 46677999999999999999 6667 899999998886532 222234443 57888889999999
Q ss_pred ecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
+|.|++|++||...++|...+. ...---+.++|+ .|--|-+.|+.+-+..++.+.. -.+..+.|. .+|.
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~-~~nd 160 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWN-NSND 160 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeec-CCCC
Confidence 9999999999999999998766 223334666763 4556777888887777766533 456778887 3566
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
.+......|+|.|...-.-+.++.++.|.....++.|+|+|++||+|+ |..+.|||+ +--|+++|..|.-+ |+
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp-----VR 235 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP-----VR 235 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc-----eE
Confidence 666677789999999888999999999998899999999999999999 999999999 58899999998765 99
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.|.||-||++|||||+ |..|-|=+++||.-+..++.-.
T Consensus 236 TlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~~~------------------------------- 273 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPCEG------------------------------- 273 (313)
T ss_pred EEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeeccC-------------------------------
Confidence 9999999999999986 9999999999999999885433
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCC---------CcEEec
Q 012410 433 EALEDITSLFYDEERNEIYTGNRH---------GLVHVW 462 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~D---------gtVrlW 462 (464)
...+||++|....||=+..| |+||+.
T Consensus 274 ----~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 ----PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ----CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 67899999999999977654 667765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=238.20 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=182.0
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---------------------------------------------
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------------------------------------------- 219 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--------------------------------------------- 219 (464)
-+-+.+..|| +|||+||+|++|+.||||.+...+
T Consensus 267 ~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 267 KGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred CCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 3555589998 899999999999999999987600
Q ss_pred -E--E--E--Ee----------cCCCEeEEEEe-------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 220 -M--L--Y--SI----------SDKHVQEIKIR-------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 220 -~--l--~--tl----------~~~~V~~Vafs-------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+ + + .| +...|.+|.+| .+.|+|||||++..-+||++|.|. .-|.+|+|.|.|+.+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRY 424 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecC-CeeEEEEecccCCCc
Confidence 0 0 0 00 01235555553 369999999999999999999976 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE-EEeccCCC-----CcCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLL-----WHPD 348 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l-~tl~gH~~-----~~~~ 348 (464)
+++||-|+-||||++...+-..-..-| +-|+|++|+||||..+-|+ +|.+++++..|..+ ..+.=|.. .+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~- 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK- 502 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-
Confidence 999999999999999888877655555 6799999999999999999 99999999976544 33331111 000
Q ss_pred CCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 349 CNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 349 ~~v~svafSpDg~--~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
-|..+-|.|-.- +|++. +|-.|||.|..+-+.+.+|+|+.+. +.
T Consensus 503 -rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~----------~S----------- 548 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT----------SS----------- 548 (712)
T ss_pred -eeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC----------Cc-----------
Confidence 177888876433 77764 3999999999999999999998760 00
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++ +-.|++||+.|+|||+|.-|.||++
T Consensus 549 ----------Q~-~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 549 ----------QI-SASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ----------ce-eeeEccCCCEEEEeecCceEEEEeC
Confidence 33 4689999999999999999999985
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=219.67 Aligned_cols=265 Identities=17% Similarity=0.264 Sum_probs=209.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC------------cccceee--ccccCceEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------------GFALFES--ESLKWPGFV 191 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------------~~~l~~~--~~~~~~~~V 191 (464)
+.|.--+-+|+++||++...++| ++ .+|-=|++.+|+-+. +.++-.. .+.+++-.+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsas---k~-------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSAS---KD-------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecC---CC-------cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 55888899999999999999966 22 377778888888541 1121111 355666689
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
|.| +||++||+|+.|.-|.|||..|++.++++. .+.|.+++|. .+.|.+||+|+++.-..+.||-+|..
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 998 899999999999999999999999999877 4689999993 46899999999998888899988778
Q ss_pred ceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+..|+-... ++.++ |+.|.|++||++ .-+-..++.+|...+-+++|-.|-. |+||| ||+|.||++ .-+.+-+
T Consensus 288 ~v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 288 GVLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ceeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeE
Confidence 8888886654 88888 569999999998 6666678899988999999988776 67888 999999998 5665544
Q ss_pred ec-------c-----CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCC
Q 012410 339 FE-------D-----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPK 405 (464)
Q Consensus 339 l~-------g-----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~ 405 (464)
.. + |..| |++||..|..+++||||. +|.||||-+.+| +-+.-|...+-
T Consensus 364 ~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls~--- 424 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLSL--- 424 (479)
T ss_pred eeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeeccc---
Confidence 33 1 1227 899999999999999986 999999999888 22222211110
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
. ..|.+|+|+++|+.|+.|
T Consensus 425 -------------------------~----GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 425 -------------------------V----GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred -------------------------c----cEEEEEEEccCCCEEEEe
Confidence 0 189999999999977665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=218.92 Aligned_cols=265 Identities=11% Similarity=0.129 Sum_probs=212.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccE---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~---l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti 163 (464)
..|.-+-|+ |.+||+++.+.+.-+|++..-.. .++| .+|...|--+.||||..+|.+ ++.+ ..+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLla----Cg~~------e~~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLA----CGFD------EVL 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEe----cCch------Hhe
Confidence 456666666 99999999999999999776655 7788 679999999999999999998 6666 679
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeCC---
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRSS--- 237 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s--- 237 (464)
++||+.+|++... +...+--.+.++++. |||+.+++||.|++|-.||+ +|+.+....+ -.|+++|++++
T Consensus 294 ~lwDv~tgd~~~~---y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHL---YPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeccCCcchhhhh---cccCcCCCcceeEEc-cCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcE
Confidence 9999999998532 222111223478996 99999999999999999997 6777766653 45999999874
Q ss_pred -----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc---eEEE
Q 012410 238 -----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT---PSAF 309 (464)
Q Consensus 238 -----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~---v~sv 309 (464)
.|..|++.+.|+-.+......+ +.+.+...+.+ +...|+.=.++.|++||++...+++...||... +.+
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS- 445 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS- 445 (519)
T ss_pred EEEEecccceeeechhhhhhhcccccc-CceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-
Confidence 6788999999988777655433 67788877773 444444569999999999988888888888653 333
Q ss_pred EEc-CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEE
Q 012410 310 IFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 310 ~Fs-pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
.|- .+..++|||| |+.|.||+. +|+++.+|.||..- ||.|+++| |-..+||||+ ||||||
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVswNP~~p~m~ASasD-----------DgtIRI 509 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSWNPADPEMFASASD-----------DGTIRI 509 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEecCCCCHHHhhccCC-----------CCeEEE
Confidence 366 4558999999 999999999 79999999999975 89999999 5567899887 999999
Q ss_pred EeC
Q 012410 386 SSI 388 (464)
Q Consensus 386 Wdi 388 (464)
|-+
T Consensus 510 Wg~ 512 (519)
T KOG0293|consen 510 WGP 512 (519)
T ss_pred ecC
Confidence 975
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=220.75 Aligned_cols=311 Identities=14% Similarity=0.162 Sum_probs=231.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC---CcccceeeE--EEEEeccCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN---FSSLKCRST--KIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sdd---fs~L~~~ti--~l~~i~~G~ 172 (464)
=|+||.+..+|++.++++..++.|..+.. ....|-++.|..||..+.+++ .+.+ ||+|..+.. -+.+..-|-
T Consensus 214 LDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~--~~~G~m~~wDLe~kkl~~v~~nah~~s 290 (910)
T KOG1539|consen 214 LDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASG--RSNGDMAFWDLEKKKLINVTRNAHYGS 290 (910)
T ss_pred ceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEec--cCCceEEEEEcCCCeeeeeeeccccCC
Confidence 68999999999999999999999999944 358899999999999887755 4433 444444111 011111111
Q ss_pred CCC-----c------------ccc--------------eeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC----
Q 012410 173 PDS-----G------------FAL--------------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---- 217 (464)
Q Consensus 173 ~~~-----~------------~~l--------------~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---- 217 (464)
+.+ + ... +..+|...|.++.|-..+|..+.|+++|+|++.+++-.
T Consensus 291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence 100 0 000 11123344556888767999999999999999998642
Q ss_pred ---CeEEEEec--------------CCCEeEEEEeC-------------CCceeEEEEEcCCCcE-EEEEee-----CCc
Q 012410 218 ---YTMLYSIS--------------DKHVQEIKIRS-------------SSHVPLKILSIEDGTV-LKVFYH-----LLH 261 (464)
Q Consensus 218 ---g~~l~tl~--------------~~~V~~Vafs~-------------s~d~tIklWdi~tG~~-l~tl~~-----~~~ 261 (464)
|+ ++... -..|-+.+|.. -++..++.|+..+-+. ..+|.+ ...
T Consensus 371 ~~l~~-~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~ 449 (910)
T KOG1539|consen 371 QELGQ-LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI 449 (910)
T ss_pred Hhhcc-cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc
Confidence 22 11111 12355555532 2566789999986544 344442 123
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce-
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL- 335 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~- 335 (464)
.+.+|+-++ =|..-++|+..|+|-++|+++|-....+ ..|.+.|++++.---+++++|++ ||-++.||+ .+.+
T Consensus 450 ~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 457787766 3566777889999999999999999988 58999999999999999999999 999999998 4553
Q ss_pred ----------------------------------------EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 336 ----------------------------------------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 336 ----------------------------------------l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
++.|.||.+. |++..|||||++|+|+|.
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm------- 596 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM------- 596 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-------
Confidence 2345589998 899999999999999998
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|+|||+||+.||+|+-.|.-.. ...+|.|||+|..|||...
T Consensus 597 ----D~tIr~wDlpt~~lID~~~vd~-----------------------------------~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 597 ----DSTIRTWDLPTGTLIDGLLVDS-----------------------------------PCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ----CCcEEEEeccCcceeeeEecCC-----------------------------------cceeeEECCCCCEEEEEEe
Confidence 9999999999999999884432 6789999999999999999
Q ss_pred C-CcEEeccC
Q 012410 456 H-GLVHVWSN 464 (464)
Q Consensus 456 D-gtVrlWd~ 464 (464)
| .-|.||.|
T Consensus 638 d~~gIylWsN 647 (910)
T KOG1539|consen 638 DQNGIYLWSN 647 (910)
T ss_pred cCceEEEEEc
Confidence 9 56999987
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=212.71 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=204.7
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|.+-||-|+--.--.++.++| .| +|..||.+++|+|+.+..+|. +.+++|+|+ +.|.+++++|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtAS----AD------hTA~iWs~Esg~CL~~Y~GH~----GSVNsikfh-~s~~L~lTaS 209 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTAS----AD------HTARIWSLESGACLATYTGHT----GSVNSIKFH-NSGLLLLTAS 209 (481)
T ss_pred cccccceeeehhhcCCcceeecc----cc------cceeEEeeccccceeeecccc----cceeeEEec-cccceEEEcc
Confidence 67888999999877666888855 56 899999999999987666555 455699997 8999999999
Q ss_pred CCCcEEEEeCC----CCeEE--EEec--------CCCEeEEEEeCCCc-eeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 206 QDSIYKVFDLK----NYTML--YSIS--------DKHVQEIKIRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 206 ~D~tiKlWdl~----tg~~l--~tl~--------~~~V~~Vafs~s~d-~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
.|+|..||... ..+.. ...+ ++.+....-+-..| .+|++ .|..|++|...|-..+|..
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee-------eeeeeeccccceEehhhhc
Confidence 99999999722 11110 0111 11111111111122 34554 6777888767777777766
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP 347 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~ 347 (464)
.+++++++|.|.|..||||++|+.++.|.||.....-+.-.|..++++++| |.|.|||||+ =.-+..|.||+.-
T Consensus 283 -gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt-- 359 (481)
T KOG0300|consen 283 -GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT-- 359 (481)
T ss_pred -CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--
Confidence 467888899999999999999999999999999999888899999999999 9999999995 4467899999997
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
|.++.|.-| +.++|||+ |.|||+||+.+=+ .|+||+-.+
T Consensus 360 ---VTS~vF~~d-d~vVSgSD-----------DrTvKvWdLrNMRsplATIRtdS------------------------- 399 (481)
T KOG0300|consen 360 ---VTSVVFNTD-DRVVSGSD-----------DRTVKVWDLRNMRSPLATIRTDS------------------------- 399 (481)
T ss_pred ---eeEEEEecC-CceeecCC-----------CceEEEeeeccccCcceeeecCC-------------------------
Confidence 889999876 55789987 9999999997743 578887654
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+.-|+.+--+.+||---++..|||+|+
T Consensus 400 ----------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 400 ----------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ----------ccceeEeecCCceEEeccCCceEEEEec
Confidence 5666777777778888888888888874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=207.89 Aligned_cols=259 Identities=15% Similarity=0.174 Sum_probs=215.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|-+|..++.||.--+-+=.||--|-++ .+|...||+-..+.|.-.-|+ ++.| -+.++||.-+|.-+
T Consensus 29 g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na~~aas----aaad------ftakvw~a~tgdel--- 94 (334)
T KOG0278|consen 29 GYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNATRAAS----AAAD------FTAKVWDAVTGDEL--- 94 (334)
T ss_pred ceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchhhhhhh----hccc------chhhhhhhhhhhhh---
Confidence 888999999997777777899999999 569999999999998766666 4455 57889999999964
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEE--ecCCCEeEEEE--------eCCCceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYS--ISDKHVQEIKI--------RSSSHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~t--l~~~~V~~Vaf--------s~s~d~tIklWd 246 (464)
++.++---+.+|+|+ .|.+.|.+|++++.+||+|++..+- ... -+...|+.+-| |...|+||||||
T Consensus 95 --hsf~hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 95 --HSFEHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred --hhhhhhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 333322113389998 7999999999999999999986553 233 33567888877 447899999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
..||+..++|+.. +++.++..+++ +.+++-...+.|+.||..+-.+++...--. .|.+...+|+...|++|+ |.-
T Consensus 172 ~rTgt~v~sL~~~-s~VtSlEvs~d--G~ilTia~gssV~Fwdaksf~~lKs~k~P~-nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 172 HRTGTEVQSLEFN-SPVTSLEVSQD--GRILTIAYGSSVKFWDAKSFGLLKSYKMPC-NVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred eccCcEEEEEecC-CCCcceeeccC--CCEEEEecCceeEEeccccccceeeccCcc-ccccccccCCCceEEecCcceE
Confidence 9999999999865 78899998875 788888888999999999998887655332 477888999999999999 999
Q ss_pred EEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 326 VAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 326 IklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+.-+|+ +|+.+-.+ +||-.. |-+|.|||||.+-||||. |||||||....|+-
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~gp-----VhcVrFSPdGE~yAsGSE-----------DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFGP-----VHCVRFSPDGELYASGSE-----------DGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEeccCCceeeecccCCCCc-----eEEEEECCCCceeeccCC-----------CceEEEEEecCCCc
Confidence 999999 79999987 899988 889999999999999986 99999999866664
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=200.18 Aligned_cols=262 Identities=14% Similarity=0.164 Sum_probs=205.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
....|.|+.|+++|+.|++ +++| -+++|+|...|++..+..-...+ +.-+.|-+++- .+..+|.
T Consensus 13 ~~~~i~sl~fs~~G~~lit----ss~d------Dsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~-~~i~sStk 77 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLIT----SSED------DSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSN-TVIHSSTK 77 (311)
T ss_pred CCCceeEEEecCCCCEEEE----ecCC------CeEEEEEcCCCceeeEeeccccc----ccEEEEecCCc-eEEEccCC
Confidence 3456999999999999999 3344 49999999999986543333221 33688876554 5555666
Q ss_pred -CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 -DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 -D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
|.|||.=+|.+-+.++.+. .+.|.+|..+| +.|.||++||+..-+|+.-+.- ..-.-+||.|. |.
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~--GL 153 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPE--GL 153 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCC--Cc
Confidence 9999999999999999887 46799999987 5789999999998888877753 23356788885 55
Q ss_pred EEE-EeCCCeEEEEECCCCc--EEEEcc---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC
Q 012410 276 LLV-KQENENLQILDVRNAE--LMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 347 (464)
Q Consensus 276 lla-~s~D~tIkIWDv~tg~--~l~~l~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~ 347 (464)
++| +...+.|||+|++.-. ...++. +-......+-|||||+.++-+. .+-|.|-|. +|..+.+|++|.+.-.
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 555 5555699999999842 333322 2345667889999999988877 889999998 9999999999987521
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
. --+..|+|||+++++|+. ||+|.+|+++||+-+..++| |..
T Consensus 234 ~--~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~~------------------------ 276 (311)
T KOG1446|consen 234 L--PLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNGG------------------------ 276 (311)
T ss_pred c--ceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCCC------------------------
Confidence 1 137889999999999986 99999999999999999999 454
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
.+..+-|+|---.+||++.
T Consensus 277 ----------~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 277 ----------PVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred ----------CccccccCCceeeeeecCc
Confidence 6778889999998888874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=217.40 Aligned_cols=259 Identities=10% Similarity=0.139 Sum_probs=214.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
.|+||.+ ....+-+|+..+|+-..-+.++ .+.|.||.|+++|..||+ +..+ +++.|||+.+.+.....
T Consensus 188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 188 ANVLAVA-LGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKTRTL 255 (484)
T ss_pred CCeEEEE-ecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhccccccc
Confidence 3444433 2337899998999844444333 788999999999999999 7777 89999999887776554
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE-ec--CCCEeEEEEeC--------CCceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS--DKHVQEIKIRS--------SSHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t-l~--~~~V~~Vafs~--------s~d~tIklWd 246 (464)
.+. +..++++++++ +..|.+|+.|+.|..+|+...+.+.. +. ...|-.+++++ +.|..+.|||
T Consensus 256 ~~~---h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 RGS---HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCC---cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 442 33667799995 67999999999999999998876644 43 56799999976 4889999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE-e-
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R- 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~-s- 322 (464)
..+-+.+.++..|...|+.++|.|...+.||+| +.|++|++||+.+|++++...+. ..|.+++||+..+-|+++ +
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCC
Confidence 988888889987779999999999878888885 39999999999999999987765 479999999888655554 4
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+..|.||+. +=+.+..|.||+.. |-.++.||||..|++|+. |.|+|+|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 889999999 78999999999998 889999999999999986 999999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=226.43 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=195.7
Q ss_pred EEEec-cceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 93 EIVAA-RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 93 ~~~~a-g~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
+.-++ +++|+++..||++++|++.+-. .+..+ ..|.+||..++.--+|+.||++| + | -||++
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~S---s-D------tTVK~ 99 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISAS---S-D------TTVKV 99 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEec---C-C------ceEEE
Confidence 33344 6789999999999999866533 37777 55999999999999999999977 3 3 59999
Q ss_pred EEeccCC--CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEecCCCEeEEEEeCCCcee
Q 012410 166 EYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 166 ~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~~~~V~~Vafs~s~d~t 241 (464)
|+...+. |..+..-|. .++-.+|.-.+|..+.|||+-|+.|+|||+++|. ++.++..-.+.++.
T Consensus 100 W~~~~~~~~c~stir~H~----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-------- 167 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHK----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-------- 167 (735)
T ss_pred eecccCcchhHhhhhccc----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC--------
Confidence 9987763 333333333 3444788733788899999999999999999984 44443221111111
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEE
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS 320 (464)
. ++-..++++|-.+ ++.+++ |+..+-||+||.++++.+.-|+||++-|+.+..++||..++|
T Consensus 168 -------s--------G~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 168 -------S--------GPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred -------C--------CCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence 0 2224556776544 245555 679999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEE
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKI 397 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl 397 (464)
+| |+||||||+ .-+|++|+.-|... ||+++-+|+=+.+.||+. ||.|..=|+.+ .+|....
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~-----VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEG-----VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCc-----eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEee
Confidence 99 999999999 69999999999987 999999999999999986 99999999888 5665544
Q ss_pred c
Q 012410 398 N 398 (464)
Q Consensus 398 ~ 398 (464)
+
T Consensus 295 k 295 (735)
T KOG0308|consen 295 K 295 (735)
T ss_pred c
Confidence 3
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-25 Score=234.44 Aligned_cols=210 Identities=13% Similarity=0.230 Sum_probs=186.9
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEE--ecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
..++.|+.|+.|..+-||.+..-.++.+ ++...|.+|.|++ +.+++||+||+|.++.++||.+|+..+-+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~s 117 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITS 117 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcce
Confidence 3568889999999998999877666654 4577899999986 48899999999999999999988888899
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
|+|+| ++++.+.++.|..++|||.+-.-|.++..+|...|..+.|+|||++++++. |.+|||||. .|+++++|++|.
T Consensus 118 v~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e 196 (825)
T KOG0267|consen 118 VDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE 196 (825)
T ss_pred eeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence 99999 577777789999999999998899999999999999999999999999999 899999999 599999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. +.++-|+|..-+|++||. |+||++||++|=+.+-...+-..
T Consensus 197 ~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~~--------------------- 239 (825)
T KOG0267|consen 197 GK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPETD--------------------- 239 (825)
T ss_pred cc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCccC---------------------
Confidence 87 789999999999999986 99999999988777665544433
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.|.+++|+|||..+++|-.+
T Consensus 240 -------------~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 240 -------------GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -------------CceeeeecCCceeeecCchh
Confidence 89999999999999999654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=187.25 Aligned_cols=278 Identities=10% Similarity=0.165 Sum_probs=213.7
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe------ccCCCCCccc---ceee--ccccCceEEEEeC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFA---LFES--ESLKWPGFVEFDD 195 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i------~~G~~~~~~~---l~~~--~~~~~~~~VaFs~ 195 (464)
.....|++|+|.|+|...|+ ++.. +|.+|-.. +.+..-..++ ++.. -+.+.+..+++|
T Consensus 30 ~dsqairav~fhp~g~lyav----gsns------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws- 98 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAV----GSNS------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS- 98 (350)
T ss_pred cchhheeeEEecCCCceEEe----ccCC------ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-
Confidence 34567999999999999988 4555 56666532 2222211111 1111 123445579998
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEE-------EEecCCCEeEEEEe--C-----------CCceeEEEEEcCCCcEEEE
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTML-------YSISDKHVQEIKIR--S-----------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l-------~tl~~~~V~~Vafs--~-----------s~d~tIklWdi~tG~~l~t 255 (464)
|+|++||+||.|++||+--.+.-+|- ..++++.|++++|- | ..|..|.+=|-.+|+.++.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999999776644442 45568899999992 1 2788999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-------CCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
+.+|+.++.++.-- .|-.+++||.|+|||.||++-..|++++... ...|.+|+.-|.|++||||- |....
T Consensus 179 ~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 179 LSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 99887888666532 2445566889999999999999999987542 35788999999999999999 99999
Q ss_pred EEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|+|++ |+.++.|.-|+.- |.+|.|||--.+|.++|. |..|||=|+ .|..-+.|.
T Consensus 257 lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdl-qgdla~el~-------- 311 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDL-QGDLAHELP-------- 311 (350)
T ss_pred EEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeec-ccchhhcCc--------
Confidence 99995 8899999999987 899999999999999998 999999996 444322221
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
...++|+-..+-.+-|.|+.--..|.|.|.|+.||-
T Consensus 312 ---------------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 ---------------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ---------------------eEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 012223333677789999999999999999999995
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-21 Score=182.44 Aligned_cols=273 Identities=15% Similarity=0.298 Sum_probs=213.0
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC-CCCcccceeeccccCceEEEE-eCCCCc-EEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEF-DDVNGK-VLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~-~~~~~~l~~~~~~~~~~~VaF-s~pdGk-~La 202 (464)
..|...+.++.|++.+..++..+ .+ ..+.+|+...+. ....+..... .....+.+ + +++. +++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~ 127 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSS-PDGNSILL 127 (466)
T ss_pred eeccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCceeEEEEeccCC---CceeeEEEEC-CCcceEEe
Confidence 45888899999999999998844 44 689999987775 2221111110 12224444 5 7887 666
Q ss_pred EecC-CCcEEEEeCCC-CeEEEEec--CCCEeEEEEeCC--------C-ceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 203 YSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRSS--------S-HVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 203 Sgs~-D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~s--------~-d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
..+. |+++++||+.+ +..+..+. ...|..++|+|+ . |.++++|++.++..+.++.+|...+..++|+
T Consensus 128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 6555 99999999987 66665554 578999999873 2 8999999999999999999777889999999
Q ss_pred ccCCCeEEEE-eCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc-eEEEeccCCC
Q 012410 270 EQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLL 344 (464)
Q Consensus 270 ~~~~~~lla~-s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge-~l~tl~gH~~ 344 (464)
|. +..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++..+++++ |+++++||.. .. ++..+.+|..
T Consensus 208 ~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 208 PD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred CC-cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 64 4445555 899999999999999999 799998775 337999999999888 9999999984 33 3666688877
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc--cCCCCCCcccccCCCCCCcccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
+ |.++.|+|++..+++++. |+++++||+.++....... +|..
T Consensus 286 ~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 329 (466)
T COG2319 286 S-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLTLKGHEG-------------------- 329 (466)
T ss_pred c-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEeeecccCC--------------------
Confidence 7 889999999999999765 7889999999999888876 6764
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEe-eCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~~LaSg-s~DgtVrlWd~ 464 (464)
.|..+.|+|++..++.+ ..|+.+++|+.
T Consensus 330 --------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 330 --------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred --------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 68889995454566666 78899999873
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=217.60 Aligned_cols=221 Identities=17% Similarity=0.179 Sum_probs=185.0
Q ss_pred ceEEEEeC--CCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 188 PGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 188 ~~~VaFs~--pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
+.+++||+ |+.-..|++ -.+.|++..+..-++++. .+.|.++.|.. +..+-|||+|+.+-..|+.
T Consensus 29 vssl~fsp~~P~d~aVt~S---~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS---VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred ceeEecCCCCCCceEEecc---cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 44899984 222133333 368999998888888877 68899999974 4668899999888778899
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCC-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR- 332 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~- 332 (464)
+..|.+++..+.|.|+++..+++|++|+.+|+||+.++.-...+.||++.|++.+|+|... +++||| ||+||+||.+
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 9988899999999998776666688999999999999997558999999999999998765 999999 9999999983
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCccccc
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDEL 410 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~ 410 (464)
++.+.+| +|..+ |.+|.|=|.|.+|||++ -..||+||+.+|. .+.....|..
T Consensus 186 ~~~~v~el-nhg~p-----Ve~vl~lpsgs~iasAg------------Gn~vkVWDl~~G~qll~~~~~H~K-------- 239 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCP-----VESVLALPSGSLIASAG------------GNSVKVWDLTTGGQLLTSMFNHNK-------- 239 (487)
T ss_pred CCceeEEe-cCCCc-----eeeEEEcCCCCEEEEcC------------CCeEEEEEecCCceehhhhhcccc--------
Confidence 6777777 46655 89999999999999987 4789999998664 4444444875
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|.|..|++.|+|||-|+-|+++|
T Consensus 240 --------------------------tVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 240 --------------------------TVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred --------------------------eEEEEEeecCCceEeecccccceEEEE
Confidence 899999999999999999999999987
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-23 Score=213.58 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=215.1
Q ss_pred hccccceEEEEec---cceeehhccCCeEEeeeccccc-----EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCc
Q 012410 85 LMKRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 156 (464)
Q Consensus 85 l~~~s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~-----~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs 156 (464)
|.-.+++....+. |--+++++.|-+++.|| .+|. ..+.|.....+.|+|+.||+.|+.+.++| ++.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wD-f~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs--g~a--- 236 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWD-FQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS--GSA--- 236 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEe-cccccccchhhhccCcccccccceeeecCCCCeEEEEe--cCc---
Confidence 4455666655554 88999999999999999 5554 45567788889999999999999999977 443
Q ss_pred ccceeeEEEEEeccCCCCC-------------cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EE
Q 012410 157 SLKCRSTKIEYIRRGKPDS-------------GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LY 222 (464)
Q Consensus 157 ~L~~~ti~l~~i~~G~~~~-------------~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~ 222 (464)
+++|.| +.|.... ..++|. .-..+.+|.+-+-....++|.|+|+|+||+.+-+- +.
T Consensus 237 -----qakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHi----a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 237 -----QAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHI----AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred -----ceeEEc-cCCceeeeeeccchhhhhhhccCCce----eeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 677776 5554311 112222 22226888755556777899999999999976432 11
Q ss_pred EecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEc
Q 012410 223 SISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVS 299 (464)
Q Consensus 223 tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l 299 (464)
.+.. .+ +.| .--.+.+.+|+++ +..|++|..||.|++||..+-- -+.+-
T Consensus 307 Vik~--------k~-----------~~g--------~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 307 VIKT--------KP-----------AGG--------KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred EEee--------cc-----------CCC--------cccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEee
Confidence 1110 00 011 0123377889884 4455667899999999964322 23345
Q ss_pred ccCCC--ceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 300 RTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 300 ~gh~~--~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
..|.. .+++|+|||||+.|||=+ |.|+||||+ + -++|.+.+|-.+..+ -.+++||||.++|++|.. .++++
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS-~~~~~ 434 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTS-APNGM 434 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEeccc-ccCCC
Confidence 67876 899999999999999999 999999999 4 899999999888655 346899999999999974 34443
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
..|++-++|-.|=+.+++|.-.+. .|..+.|+|-=+.|.-|+
T Consensus 435 ----~~g~L~f~d~~t~d~v~ki~i~~a----------------------------------Svv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 435 ----TAGTLFFFDRMTLDTVYKIDISTA----------------------------------SVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ----CCceEEEEeccceeeEEEecCCCc----------------------------------eEEEEeecchhhheeeec
Confidence 267999999999999988854443 788899999999999999
Q ss_pred CCCcEEec
Q 012410 455 RHGLVHVW 462 (464)
Q Consensus 455 ~DgtVrlW 462 (464)
.||++||+
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=199.97 Aligned_cols=223 Identities=13% Similarity=0.182 Sum_probs=189.6
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeC---------CCceeEEEEEcCCC
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRS---------SSHVPLKILSIEDG 250 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~---------s~d~tIklWdi~tG 250 (464)
+.+++.+|+|+ -||..||+||.|++++||++.-+..++.+. +..|-.++..| +.|.+|++||+..|
T Consensus 19 ~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 19 HVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhcceEEEEc-ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 44566699997 799999999999999999999887665443 34577777754 58999999999999
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+|....+.. ..+.-+.++| ++++++++..|.-|-..|+++-+.++..+-- -.+..++|+.++.+|.-.. .|+|.|-
T Consensus 98 k~~~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 98 KCTARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred cEEEEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecCCceEEEE
Confidence 999988743 5567788888 5789999999999999999999887765433 3567788987777766655 9999999
Q ss_pred eC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 330 NF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
.. .-+.++++..|..- ...|.|+|+|+++|.||. |-.+-|||+..=-|++.|.-|.-
T Consensus 175 sypsLkpv~si~AH~sn-----CicI~f~p~GryfA~GsA-----------DAlvSLWD~~ELiC~R~isRldw------ 232 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSN-----CICIEFDPDGRYFATGSA-----------DALVSLWDVDELICERCISRLDW------ 232 (313)
T ss_pred eccccccccccccCCcc-----eEEEEECCCCceEeeccc-----------cceeeccChhHhhhheeeccccC------
Confidence 98 79999999999854 458999999999999986 99999999999999999988875
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
+|..|.||-||+.|||||+|..|-
T Consensus 233 ----------------------------pVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 233 ----------------------------PVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ----------------------------ceEEEEeccCcceeeccCccceEE
Confidence 899999999999999999999874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=210.20 Aligned_cols=274 Identities=13% Similarity=0.137 Sum_probs=212.7
Q ss_pred eeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
++.| -+|.+-|.+++=+|+- ..+++ ++.| +.++|||+.+..+..++.-|. |-+..+.++ ++
T Consensus 59 v~~L-~gHrdGV~~lakhp~~ls~~aS----Gs~D------G~VkiWnlsqR~~~~~f~AH~----G~V~Gi~v~--~~- 120 (433)
T KOG0268|consen 59 VGSL-DGHRDGVSCLAKHPNKLSTVAS----GSCD------GEVKIWNLSQRECIRTFKAHE----GLVRGICVT--QT- 120 (433)
T ss_pred hhhc-cccccccchhhcCcchhhhhhc----cccC------ceEEEEehhhhhhhheeeccc----CceeeEEec--cc-
Confidence 4455 5588889999999965 44555 6667 799999999998876665554 344478886 34
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
-..++++|+|||.|-+. |..++++.+ ..+..|.-.- ..-..|.|||.+--..+++++-....+.+|.|+|..
T Consensus 121 ~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ceEEecCCcceeeeecc-CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 55678999999999874 457777763 3345554421 122359999999899999998434778999999963
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 349 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~ 349 (464)
-..|+++..|+.|-|+|++++..++-..- .+...+++|+|++-.|++++ |..+-..|.+ -+.+....||.+.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---- 274 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---- 274 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccccee----
Confidence 33344456999999999999998874332 36678899999999999999 9999999984 7789999999988
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 350 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 350 ~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
|.+|.|||.|+-++|||. |.||||+.+..|..--+. |+
T Consensus 275 -V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht---------------------------- 312 (433)
T KOG0268|consen 275 -VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT---------------------------- 312 (433)
T ss_pred -EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH----------------------------
Confidence 889999999999999998 999999997544322211 11
Q ss_pred cccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 430 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 430 ~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+-++.|.+|.||-|.+.|.|||+|+.||||.
T Consensus 313 ---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 ---KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ---hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 2345899999999999999999999999995
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=196.88 Aligned_cols=252 Identities=13% Similarity=0.165 Sum_probs=192.0
Q ss_pred ccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceee
Q 012410 105 AHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFES 182 (464)
Q Consensus 105 ~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~ 182 (464)
.-.|.+-+-++..++.|..++. --++-+..|++|++.+..+.+. ++| .+++|||.. .-+++..++-|..
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a--~GD-------GSLrl~d~~~~s~Pi~~~kEH~~ 105 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA--SGD-------GSLRLFDLTMPSKPIHKFKEHKR 105 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE--ecC-------ceEEEeccCCCCcchhHHHhhhh
Confidence 3445666666544555555433 2346689999999876655532 455 499999942 1222333343333
Q ss_pred ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcC-CC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIE-DG 250 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~-tG 250 (464)
| +.+|.++..+++.+.++|.|+||||||..-++-+.|+.+ .-|...+||| ++|++++|||+. -|
T Consensus 106 E----V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 106 E----VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG 181 (311)
T ss_pred h----eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence 3 348999888999999999999999999998888888874 5699999987 699999999986 57
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTV 326 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TI 326 (464)
+.+. ++-|...+-+.+|+.. +..+++ |+.|+.||+||+++- ..+-+|.||.-.|+.|.|||-- .+|||+| |=|+
T Consensus 182 k~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 182 KFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 7766 5544367899999885 555555 789999999999984 4678899999999999999864 5789999 9999
Q ss_pred EEEeCC--CceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 327 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 327 klWd~~--Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||||.. -.++.+.+-|+.. |..+.||+ ++.++||.+- |++++||+
T Consensus 260 riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW-----------De~l~Vw~ 307 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW-----------DELLYVWN 307 (311)
T ss_pred EecccccchhhhhhhhccceE-----EeccccccccCceeeeccc-----------ccceeeec
Confidence 999983 4477788889887 55677776 6778998876 99999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=218.51 Aligned_cols=278 Identities=12% Similarity=0.096 Sum_probs=209.3
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCC----CCcc--ccee-eccccCceEEEEeCCC
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKP----DSGF--ALFE-SESLKWPGFVEFDDVN 197 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~----~~~~--~l~~-~~~~~~~~~VaFs~pd 197 (464)
..++..|.||..+|||..+|| ++.. ++ ..+.||.... .+. +... .+.+ ..|.+-+.+|.|+ ||
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aT----gGq~---~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~d 80 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFAT----GGQV---LD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PD 80 (942)
T ss_pred ccCCeeEEEEEecCCceeEec----CCcc---cc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CC
Confidence 445567899999999999988 5411 22 3444887521 111 1111 1222 1244555589998 99
Q ss_pred CcEEEEecCCCcEEEEeCCC-------C-----------eEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCC
Q 012410 198 GKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIED 249 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~t-------g-----------~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~t 249 (464)
|++|||||.|+.|.||+... | ++..+|. +..|.+|+++| +.|.+|-|||..|
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 99999999999999999872 1 1444444 67899999998 4889999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC------ceEEEEEcCCCcEEEEEe-
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~------~v~sv~FspdgqllaS~s- 322 (464)
.++++++++|...|+.|.|-|- |.++++-++|++|++|+..+-.+.+...+++. ...-+.|||||+.|+|.-
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ceeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999988899999999885 44555557999999999777778887777764 345678999999999975
Q ss_pred -CC---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCccccccCCC
Q 012410 323 -NR---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 323 -D~---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD-----g~------------~LaSgs~~~~~~~~~~s~D 380 (464)
++ +|.|-+- +-++-..|-||... |.-+.|+|- .+ .+|+||. |
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq-----------D 303 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ-----------D 303 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEecC-----------C
Confidence 44 8999886 35567799999997 788999981 22 6777776 9
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++|-||+...-+.+..++.-.+ ..|..++|||||-.|.-+|.||+|.
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~---------------------------------~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFN---------------------------------KSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhc---------------------------------CceeeeeEcCCCCeEEEEecCCeEE
Confidence 9999999765565554432222 1789999999999999999999998
Q ss_pred ec
Q 012410 461 VW 462 (464)
Q Consensus 461 lW 462 (464)
+-
T Consensus 351 ~i 352 (942)
T KOG0973|consen 351 LI 352 (942)
T ss_pred EE
Confidence 74
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=179.12 Aligned_cols=225 Identities=16% Similarity=0.305 Sum_probs=187.5
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEecC---CCEeEEEE-eC----------CCceeEEEEEcCC-C
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD---KHVQEIKI-RS----------SSHVPLKILSIED-G 250 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~~---~~V~~Vaf-s~----------s~d~tIklWdi~t-G 250 (464)
.+..+.|+ +++..++.++.|+.+++|+...+. .+..+.. ..+..+.+ ++ ..|+.+++|++++ +
T Consensus 67 ~i~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 67 SITSIAFS-PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred eEEEEEEC-CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 34478996 899999999999999999998886 5555553 24665555 32 2478999999998 7
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeC-CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVA 327 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~-D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIk 327 (464)
.....+..+...+..++|+|. +..+++++. |+++++||+.++..+.++.+|...|..++|+|++. ++++++ |++|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 888888877688899999995 445666664 99999999999999999999999999999999998 666657 99999
Q ss_pred EEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCC
Q 012410 328 VWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSP 404 (464)
Q Consensus 328 lWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~ 404 (464)
+||. .|+++. .+.+|... + ...|+|++.++++++. |+++++||+..... +..+.+|..
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~-- 285 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDS-----V-VSSFSPDGSLLASGSS-----------DGTIRLWDLRSSSSLLRTLSGHSS-- 285 (466)
T ss_pred EEECCCCcEEeeecCCCCcc-----e-eEeECCCCCEEEEecC-----------CCcEEEeeecCCCcEEEEEecCCc--
Confidence 9999 599999 79999875 3 2379999999998776 99999999987775 777667764
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++.|+|++..+++++.|+++++||.
T Consensus 286 --------------------------------~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 286 --------------------------------SVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred --------------------------------cEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 8999999999999999999999999963
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-23 Score=203.20 Aligned_cols=187 Identities=18% Similarity=0.270 Sum_probs=160.6
Q ss_pred CCCEeEEEE--------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEE------CC
Q 012410 226 DKHVQEIKI--------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD------VR 291 (464)
Q Consensus 226 ~~~V~~Vaf--------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWD------v~ 291 (464)
.+.||.|+. +++.|+|.+||.+|+|.||.+..+|.+.|.+|.|+++ +..+|++|.|+|..||. +-
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP 226 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVP 226 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCC
Confidence 456777766 3479999999999999999999999999999999984 45556689999999996 21
Q ss_pred C------------------------------Cc----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce
Q 012410 292 N------------------------------AE----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 292 t------------------------------g~----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
+ |. .+..|.||...|.+..|+..|+.++++| |+|.-|||+ +|++
T Consensus 227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce
Confidence 1 11 2335788998899999999999999999 999999999 7999
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
++.|.||..- .+-+.-+|.++++++.|. |-|.||||...- +.+..|+||++
T Consensus 307 v~~LtGHd~E-----LtHcstHptQrLVvTsSr-----------DtTFRLWDFReaI~sV~VFQGHtd------------ 358 (481)
T KOG0300|consen 307 VNILTGHDSE-----LTHCSTHPTQRLVVTSSR-----------DTTFRLWDFREAIQSVAVFQGHTD------------ 358 (481)
T ss_pred eccccCcchh-----ccccccCCcceEEEEecc-----------CceeEeccchhhcceeeeeccccc------------
Confidence 9999999987 567778999999999987 999999998643 56889999997
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++.|.-|.+ ++|||+|.||||||+
T Consensus 359 ----------------------tVTS~vF~~dd~-vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 359 ----------------------TVTSVVFNTDDR-VVSGSDDRTVKVWDL 385 (481)
T ss_pred ----------------------ceeEEEEecCCc-eeecCCCceEEEeee
Confidence 899999998876 899999999999985
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.54 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=220.6
Q ss_pred ehhccCCeEEeeecccc--cEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCC---
Q 012410 102 FALAHSGVCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS--- 175 (464)
Q Consensus 102 ~~l~~~g~~~~~~~~~g--~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~--- 175 (464)
|....+..+.+|.-.++ ++.+.| .+|.+||++++|+..+. .+..+| ++.| +.||||.|.-+....
T Consensus 163 a~Ggs~~~v~~~s~~~d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS--~SQD------~yIRiW~i~~~~~~~~~~ 233 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSADSFARVAEL-EGHTDWIRSLAFARLGGDDLLLAS--SSQD------RYIRIWRIVLGDDEDSNE 233 (764)
T ss_pred EecCcceEEEEeccCCcceeEEEEe-eccchhhhhhhhhccCCCcEEEEe--cCCc------eEEEEEEEEecCCccccc
Confidence 33334446677732222 577888 56999999999999887 555555 8888 999999996555110
Q ss_pred ---------ccccee---------------eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec----
Q 012410 176 ---------GFALFE---------------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS---- 225 (464)
Q Consensus 176 ---------~~~l~~---------------~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~---- 225 (464)
..+.|. .+|-.|+.+|.+. |.|..|.|+|.|+|+.+|.-. +|--+-++.
T Consensus 234 ~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~ 312 (764)
T KOG1063|consen 234 REDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV 312 (764)
T ss_pred cccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEeecc
Confidence 001111 0244677799997 899889999999999999754 444433332
Q ss_pred ---CCCEeEEEEeCCC--------ceeEEEEEcC-CCcEEEE--EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 226 ---DKHVQEIKIRSSS--------HVPLKILSIE-DGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ---~~~V~~Vafs~s~--------d~tIklWdi~-tG~~l~t--l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
...-++.-|+|++ .+-.++|-.+ .+.+.+. ..+|...|+.|++.| .|++||+.|.|.|-||+-..
T Consensus 313 gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 313 GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccc
Confidence 2457888888854 4678999833 3444433 347778899999988 68999999999999883322
Q ss_pred --------------------------------------------------------------------------------
Q 012410 292 -------------------------------------------------------------------------------- 291 (464)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (464)
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence
Q ss_pred ---------CCc----EEE-----------------------------EcccCCCceEEEEEcCCCcEEEEEe-CC----
Q 012410 292 ---------NAE----LME-----------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 324 (464)
Q Consensus 292 ---------tg~----~l~-----------------------------~l~gh~~~v~sv~FspdgqllaS~s-D~---- 324 (464)
+|. |.+ -|-||.-.|++++.||+|+++||++ -.
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc
Confidence 110 011 1234666789999999999999987 33
Q ss_pred -eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEEc
Q 012410 325 -TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKIN 398 (464)
Q Consensus 325 -TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~ 398 (464)
-|+||+. +=..++.|++|+.- |.-++|||||++|+|.|. |.|+.||+.+.+.- .+.++
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred eEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhhcccc
Confidence 6899998 45566789999987 899999999999999998 99999998754321 33466
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|+. -||+..|+||++.+||+|+|++|++|.
T Consensus 616 ~HtR----------------------------------IIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 616 AHTR----------------------------------IIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccce----------------------------------EEEEcccCcccceeEEecCCceEEEEe
Confidence 7764 899999999999999999999999995
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=210.82 Aligned_cols=219 Identities=16% Similarity=0.213 Sum_probs=167.4
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE----EEEec---CCCEeEEEEeCCC--------ceeEEEEEcCCCcEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS---DKHVQEIKIRSSS--------HVPLKILSIEDGTVL 253 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~----l~tl~---~~~V~~Vafs~s~--------d~tIklWdi~tG~~l 253 (464)
.+++|+ |.|-.++|||.|.+||+||++.-.. .+.|. .+.|.+++||+.. ...+||+|-. |..+
T Consensus 171 sal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~ 248 (641)
T KOG0772|consen 171 SALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEI 248 (641)
T ss_pred EEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Ccee
Confidence 379996 9999999999999999999875332 12333 5789999999854 4567899875 6555
Q ss_pred EEE-------------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEccc-----CCCceEEEEEcCC
Q 012410 254 KVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-----EFMTPSAFIFLYE 314 (464)
Q Consensus 254 ~tl-------------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~g-----h~~~v~sv~Fspd 314 (464)
..+ ++|...+.+..|.|...+.+|++++|+|+||||+.+-+ -++++.+ --..|.+++|+||
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 444 24556678999999777899999999999999998754 3444432 2346889999999
Q ss_pred CcEEEEEe-CCeEEEEeCCCceE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 315 NQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~~Ge~l----~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|++||+|+ ||.|.+|+..+.-+ ..=..|.... .|.+|.||+||++|+|-+. |+|+||||+.
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~---~Itsi~FS~dg~~LlSRg~-----------D~tLKvWDLr 394 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ---DITSISFSYDGNYLLSRGF-----------DDTLKVWDLR 394 (641)
T ss_pred cchhhhcccCCceeeeecCCcccccceEeeeccCCCC---ceeEEEeccccchhhhccC-----------CCceeeeecc
Confidence 99999999 99999999733322 2334566532 2889999999999999876 9999999996
Q ss_pred C-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 390 T-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 390 t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
+ .+||.+..|--+ + -.-+.+.||||.+.|++|..
T Consensus 395 q~kkpL~~~tgL~t-~-------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPT-P-------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccccchhhhcCCCc-c-------------------------------CCCCccccCCCceEEEeccc
Confidence 6 578877655432 0 03456899999999999964
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=211.01 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=183.5
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--------CC---------------C------
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GK---------------P------ 173 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--------G~---------------~------ 173 (464)
.++..|.+-||++-||+||++||+ ++.| +.|+||-|.. |. +
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAs----aGeD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~ 330 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLAS----AGED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE 330 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeee----cCCC------ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence 344479999999999999999999 6677 8999998855 00 0
Q ss_pred --------------CCc------ccceee----ccccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-
Q 012410 174 --------------DSG------FALFES----ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 225 (464)
Q Consensus 174 --------------~~~------~~l~~~----~~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~- 225 (464)
... ...|.. +..+|.+ .+++| -|+ +|.|+|-|+|||||++..-+||.+|.
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H 408 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNN-FLLSSSMDKTVRLWHPGRKECLKVFSH 408 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-cCC-eeEeccccccEEeecCCCcceeeEEec
Confidence 000 001110 1245555 68997 455 88999999999999999999999998
Q ss_pred CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE
Q 012410 226 DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 226 ~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
.+-|.+|+|.| +-|+.|+||+|.+-++..-.. ...-|.+|+|.|+ |+..++|+.+|..++|+...-++.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEE
Confidence 57899999988 477899999999776665333 2255699999995 777788999999999997776655
Q ss_pred EEcc--c-------CCCceEEEEEcCCCc--EEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 297 EVSR--T-------EFMTPSAFIFLYENQ--LFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 297 ~~l~--g-------h~~~v~sv~Fspdgq--llaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~La 364 (464)
.... - |. .|+.+-|.|... +|+|+.|..|||.|. +-+++.-|+|+.+-.. =.+..|++||++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKHIV 562 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCEEE
Confidence 4321 1 22 799999986544 777777999999999 6889999999887522 24688999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeC
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|+|+ |.-|.||+.
T Consensus 563 s~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 563 SASE-----------DSWVYIWKN 575 (712)
T ss_pred Eeec-----------CceEEEEeC
Confidence 9997 999999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-22 Score=191.47 Aligned_cols=222 Identities=14% Similarity=0.222 Sum_probs=174.9
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCC-C--eEEEEec--CCCEeEEEE----------eCCCceeEEEEEcCCCcEEEE
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSIS--DKHVQEIKI----------RSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~t-g--~~l~tl~--~~~V~~Vaf----------s~s~d~tIklWdi~tG~~l~t 255 (464)
+..+ .-|+.||++|.|++|||+.+.+ + +++.+|. .++||.|++ |.+.|+.|-||.-++|+--+.
T Consensus 17 a~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 17 AQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred hhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 3443 6799999999999999999985 3 4566776 578999999 347999999999999965555
Q ss_pred Ee--eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC-c--EEEEcccCCCceEEEEEcCC---C-----------
Q 012410 256 FY--HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-E--LMEVSRTEFMTPSAFIFLYE---N----------- 315 (464)
Q Consensus 256 l~--~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg-~--~l~~l~gh~~~v~sv~Fspd---g----------- 315 (464)
.+ .|...|.+|+|-|..-+.+|+ ++.||+|.|.+..+. . --+....|...|.+|.+.|- |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 44 345678999999976566666 789999999987764 2 23456789999999999987 6
Q ss_pred cEEEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 316 QLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 316 qllaS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+.|+|++ |.+||||+++ |+ +-.+|++|..| |+.||+.|. ..+|||+|. ||+|-||-
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt 239 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWT 239 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEE
Confidence 6699999 9999999995 53 45689999999 788999996 468999987 99999996
Q ss_pred CCC--CeEEEEE-ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 388 ILT--GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 388 i~t--G~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
... ++--.|+ +... ..||.+.||+-|+.||-+..|..|.||.
T Consensus 240 ~~~e~e~wk~tll~~f~----------------------------------~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFP----------------------------------DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ecCccCcccccccccCC----------------------------------cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 431 1111111 1111 1799999999999999999999999994
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=194.55 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=218.7
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
-+.+++..|-...+.+ ++.| .++-+.|...++...++++++... ..|.|+ |+-..++++|.|.+|
T Consensus 221 gi~ald~~~s~~~ilT----GG~d------~~av~~d~~s~q~l~~~~Gh~kki----~~v~~~-~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 221 GITALDIIPSSSKILT----GGED------KTAVLFDKPSNQILATLKGHTKKI----TSVKFH-KDLDTVITASADEII 285 (506)
T ss_pred CeeEEeecCCCCccee----cCCC------CceEEEecchhhhhhhccCcceEE----EEEEec-cchhheeecCCcceE
Confidence 3777777776344555 5666 799999999999998888887543 389997 899999999999999
Q ss_pred EEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCC--cceeeEEEEccCCCeEEE
Q 012410 211 KVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLL--HRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~--~~~~~V~F~~~~~~~lla 278 (464)
+||.+.+.++...+. ++.|..+...| +.|++.-.-|+++|.++....+.. -...+.+|+|+ +.|+.
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD--gLifg 363 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD--GLIFG 363 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC--ceEEe
Confidence 999988777654433 67788888765 688999999999999998776532 23589999995 56665
Q ss_pred -EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEE
Q 012410 279 -KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 355 (464)
Q Consensus 279 -~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sva 355 (464)
|..|+.|||||+.++.-+.-+.||+..|.++.|+.+|-+||++. |+.|++||++ -+..+|+.-.... .|+++.
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~ 439 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLS 439 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEE
Confidence 67999999999999999999999999999999999999999999 8889999995 7777777755543 189999
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 356 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 356 fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
|-+.|++|+.|+. |=+|.+.+-. +-+|+..+.-|++
T Consensus 440 fD~SGt~L~~~g~-----------~l~Vy~~~k~~k~W~~~~~~~~~sg------------------------------- 477 (506)
T KOG0289|consen 440 FDQSGTYLGIAGS-----------DLQVYICKKKTKSWTEIKELADHSG------------------------------- 477 (506)
T ss_pred EcCCCCeEEeecc-----------eeEEEEEecccccceeeehhhhccc-------------------------------
Confidence 9999999999864 5555555422 5678888888875
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.|.|..+-+.|+++|.|...+|..
T Consensus 478 ---~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 478 ---LSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ---ccceeeecccceEEeeccchhheEEee
Confidence 678899999999999999999998863
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=185.04 Aligned_cols=215 Identities=18% Similarity=0.184 Sum_probs=183.9
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~t 255 (464)
+....|.|+ -+|.+|-|++-|.++-||--.+|+-|-+.. .+.||++.+. .+.|+++||||+++|+++.+
T Consensus 11 RplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 11 RPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred cccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence 334489997 899999999999999999998999996655 6789999994 36899999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEe-----CCCeEEEEECC-------CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVR-------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s-----~D~tIkIWDv~-------tg~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+... ..|+.|.|++. +..+++.. .-+.|-+.|++ +.+++..+..+...+.+..|.|-++.|++|-
T Consensus 90 ~k~~-~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 90 WKTN-SPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred eecC-CeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 9854 68899999984 44444443 34788999999 5666777777778888888999999999999
Q ss_pred CCeEEEEeC-CC-ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNF-RG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~-~G-e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
||.|.+||+ +| +++.+-+.|... |+++.||||..+++++|+ |.|-||||..|=+|++|+..-
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~-----Ind~q~s~d~T~FiT~s~-----------Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSK-----INDLQFSRDRTYFITGSK-----------DTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccc-----cccccccCCcceEEeccc-----------CccceeeeccceeeEEEeeec
Confidence 999999999 67 577788999987 889999999999999998 999999999999999999665
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
. +|.+.|++|--..++.|+
T Consensus 232 ~-----------------------------------PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 232 R-----------------------------------PVNTAAISPLLDHVILGG 250 (327)
T ss_pred c-----------------------------------cccceecccccceEEecC
Confidence 4 899999999777776665
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=196.83 Aligned_cols=227 Identities=15% Similarity=0.191 Sum_probs=192.4
Q ss_pred cCceEEEEeCCCC--cEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdG--k~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~l 253 (464)
.-|+..+|+ +.+ ..+.+|+.|+++-++|-...+.|.++.+ ..|.+|.|+| +.|..|+||+..+..+.
T Consensus 218 ~~pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 218 STPGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 345567775 555 5778899999999999999999988874 5688999976 57889999999988877
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
....-|...|..+.-.| .++++|+++.|+++-.-|+++|.++.+-... .-.+.+.+|.|||-+|++|. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 77765557777777767 6899999999999999999999998765543 24578999999999999999 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
+ ++.-+..|.||+.. |.+|+|+.+|-+||.+++ |++|+|||+..-+-.++|.-...
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 9 68899999999998 899999999999999997 99999999977777777654432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..|.++.|++-|+.|+.++.|=+|++.+
T Consensus 433 --------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 --------------------------KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred --------------------------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 1688999999999999999988887654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-23 Score=220.40 Aligned_cols=212 Identities=12% Similarity=0.236 Sum_probs=177.5
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEE------EEe--CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEI------KIR--SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~V------afs--~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.+-.++....+...|+||.+.-.+. ...|..+ .+. ...|..+-||.+..=-++..|.+|...+.+|.|
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~~~h----saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREFVAH----SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccccceeeeeeccccccchhhhhh----hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555566667888986543221 1122222 222 246777889999666677788888789999999
Q ss_pred EccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCC
Q 012410 269 IEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~ 345 (464)
.+. +.|++ |+.|||||+||+..++.+++|.||...+.+|.|+|-|.++|+++ |.-+++||.+ --|.+++.+|..-
T Consensus 79 ~~~--E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 79 DTS--ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred Ccc--hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 884 55555 77999999999999999999999999999999999999999999 9999999995 7799999998765
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
|+.+.|+|||+++++|.+ |++|||||...|+.+.+|++|+.
T Consensus 157 -----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~----------------------- 197 (825)
T KOG0267|consen 157 -----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG----------------------- 197 (825)
T ss_pred -----eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-----------------------
Confidence 889999999999999976 99999999999999999999997
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|.|+|---.|++||.|++|++||+
T Consensus 198 -----------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -----------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------cccccccCchhhhhccCCCCceeeeecc
Confidence 8889999999999999999999999995
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=196.92 Aligned_cols=270 Identities=18% Similarity=0.183 Sum_probs=212.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-cccceeeccccCceEEEEeCCCCcE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-GFALFESESLKWPGFVEFDDVNGKV 200 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk~ 200 (464)
.+++.-+.+ |.|+|||.....||+ +-.+ ..|.||++..+=+.. .+.+.+ -+++.+++|+ +|..
T Consensus 19 rf~d~~Ps~-I~slA~s~kS~~lAv----sRt~------g~IEiwN~~~~w~~~~vi~g~~---drsIE~L~W~--e~~R 82 (691)
T KOG2048|consen 19 RFVDYKPSE-IVSLAYSHKSNQLAV----SRTD------GNIEIWNLSNNWFLEPVIHGPE---DRSIESLAWA--EGGR 82 (691)
T ss_pred EEEeeeccc-eEEEEEeccCCceee----eccC------CcEEEEccCCCceeeEEEecCC---CCceeeEEEc--cCCe
Confidence 355454544 999999999999988 3444 589999987765532 122322 2566689997 4557
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE--EeeCCcceeeEEE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV--FYHLLHRNKKVDF 268 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t--l~~~~~~~~~V~F 268 (464)
|-|.+.+++|--||+.+++.++.+. ++.||+++++|. +|+-+.+.++..|++... |.-...|+.+|+|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 8899999999999999999999887 678999999983 677889999998887754 3333478999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEE-----E--c-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELME-----V--S-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~--l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+. +-+|++|+.|+-|++||+.+++.++ + + ++..--||+|.|..|+. ||||. -|+|+.||. .|.++++
T Consensus 163 ~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 163 NPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred cCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhh
Confidence 994 5568889999999999999999877 2 1 22445699999998886 56666 999999999 7999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EE--EEccCCCCCCcccccCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LA--KINATNCSPKVDDELGSSS 414 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~--tl~gh~~~~~~~~~~~~~~ 414 (464)
+.-|..- |.+++.++++++++|++. |++|-.....+++- +. ...+|..
T Consensus 241 ~~~h~ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~h------------ 292 (691)
T KOG2048|consen 241 HSCHDAD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHAH------------ 292 (691)
T ss_pred hhhhhcc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCcc------------
Confidence 9999876 899999999999999987 88887777655533 11 1123432
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|.+++..++ .|+||+.|.++.+
T Consensus 293 ----------------------dvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 293 ----------------------DVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ----------------------cceeeeeecc--eEEecceeeEEEE
Confidence 8999999988 8999999999865
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=187.12 Aligned_cols=292 Identities=13% Similarity=0.141 Sum_probs=204.7
Q ss_pred eEEeeecccccEeeEee----cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc
Q 012410 109 VCAAFSRETNRRICFLN----VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln----~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~ 184 (464)
-.+.|+..+.+..+-|| .+|..-|.+|+|+.||++||+++ +| |+|+||+++.=....-.-+-..--
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nve 131 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNVE 131 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhcccc
Confidence 46777767777655544 56888899999999999999944 66 899999985411100000000112
Q ss_pred ccCceEEEEeCCCCcE-EEEecCCCcEEEEeCC---CCeEEEE-ec-C-------C--CEeEEEE--------eCCCcee
Q 012410 185 LKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLK---NYTMLYS-IS-D-------K--HVQEIKI--------RSSSHVP 241 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~-LaSgs~D~tiKlWdl~---tg~~l~t-l~-~-------~--~V~~Vaf--------s~s~d~t 241 (464)
..||..|+|+ ||-+- +++.....++.++-+. .|..-++ .+ + + .|.++-+ |.+.|.+
T Consensus 132 ~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 132 YDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred CCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 5799999997 78764 4455566678887653 2332211 11 1 1 2333333 5689999
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC---CcE-----EEEcccCCCceEEEEEcC
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AEL-----MEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t---g~~-----l~~l~gh~~~v~sv~Fsp 313 (464)
|-||++. |+.|.++....-.+.-.+.+| +|..+++++.---+++|.+-= |+- .-.|.||+..|.+++|||
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 9999998 999999885545566777778 455666678888999998643 332 226899999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeCC-----Cc---eEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-----GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-----Ge---~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+...++|.| ||++||||.+ |+ +|+++. -|..--. .+ -++.||.|+.||-.. -.+
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~--p~-RL~lsP~g~~lA~s~------------gs~ 353 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE--PV-RLELSPSGDSLAVSF------------GSD 353 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC--ce-EEEeCCCCcEEEeec------------CCc
Confidence 999999999 9999999953 33 344432 1111100 02 589999999999765 467
Q ss_pred EEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 383 INVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 383 IklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+++...++|+-.-+++ .|.. .|.+++|+|||+.|||.+ |.-|||
T Consensus 354 l~~~~se~g~~~~~~e~~h~~----------------------------------~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 354 LKVFASEDGKDYPELEDIHST----------------------------------TISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred eEEEEcccCccchhHHHhhcC----------------------------------ceeeEEecCCCcEEeeec-ceeeee
Confidence 9999999998766663 4654 899999999999999987 455665
Q ss_pred cc
Q 012410 462 WS 463 (464)
Q Consensus 462 Wd 463 (464)
-.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 43
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=194.40 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=203.7
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeE-ee----------------cCCCceEEEEEEeeCCCEEEEEEe
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LN----------------VSPDEVIRSLFYNKNNDSLITVSV 149 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~-ln----------------~~~~~~i~Sv~fs~~g~~l~svSa 149 (464)
-++....+. +..++.++.+|++.=|++.+|+-... +. ..|...|-+++.|+||++|++
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat--- 219 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT--- 219 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe---
Confidence 345555555 66999999999999999999995521 11 156778999999999999999
Q ss_pred ecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CC
Q 012410 150 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK 227 (464)
Q Consensus 150 ~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~ 227 (464)
+.-| +.+-||+..+++..+.+++|... +-+++|- -.-.-|.|+|.|.+||+|++..-..+.|+. ..
T Consensus 220 -gg~d------~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 220 -GGRD------RHVQIWDCDTLEHVKVFKGHRGA----VSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred -cCCC------ceEEEecCcccchhhcccccccc----eeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 7777 89999999999998877766643 3389995 455679999999999999998776666665 45
Q ss_pred CEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc
Q 012410 228 HVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 299 (464)
Q Consensus 228 ~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l 299 (464)
.|.+|.... ..|.|++||.|. -+...+|.++...+-+|+|+.. +.+++||.||+|-||++...+.+-+.
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence 677776632 489999999996 4566677776678899999975 89999999999999999999877643
Q ss_pred c-cC-----------CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC----ceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 300 R-TE-----------FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG----ELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 300 ~-gh-----------~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G----e~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
+ .| ..|+++++-.|...++|||| ||.||||-+ +| +++..+. -..+ ||+|+|+++|+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~f~~sgk 438 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLAFSNSGK 438 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEEEccCCC
Confidence 2 22 22899999999999999999 999999998 57 4566655 3334 89999999999
Q ss_pred EEEEEe
Q 012410 362 LIISYC 367 (464)
Q Consensus 362 ~LaSgs 367 (464)
.|+.|.
T Consensus 439 ~ivagi 444 (479)
T KOG0299|consen 439 RIVAGI 444 (479)
T ss_pred EEEEec
Confidence 777664
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=196.13 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=194.3
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
..+|+++.||.+++||+.+-.++.++ ..|..+|+.+.+.. ....+ .++| +|++.|-+.- .+..++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~t----vgdD------KtvK~wk~~~-~p~~til 145 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFT----VGDD------KTVKQWKIDG-PPLHTIL 145 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEE----ecCC------cceeeeeccC-Ccceeee
Confidence 56899999999999999999999999 66999999999998 44555 4567 8999998643 3322111
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEc
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSI 247 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi 247 (464)
.-. ..+ .+.-. --+...|+++++ |-|||.+--..+.+++ ...|.+|+|+| .+|..|-|+|.
T Consensus 146 g~s-~~~----gIdh~-~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 146 GKS-VYL----GIDHH-RKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred ccc-ccc----ccccc-cccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 100 111 11111 123467777765 9999998777777776 57899999987 38999999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
.+++.|+...-. -+..+|+|+| ..-.+.++++|.++..+|++.- +.+++..+|...|.+|.|||-|+-|+||| |+|
T Consensus 218 R~~~Pl~KVi~~-mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 218 RQASPLKKVILT-MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ccCCccceeeee-ccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence 999999876632 4668999999 4455666889999999999984 47889999999999999999999999999 999
Q ss_pred EEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 326 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 326 IklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|||+.++ |.---+..-.... .|.+|.||-|.++|+|||+ |+.||||-..
T Consensus 296 IRIf~~~~~~SRdiYhtkRMq----~V~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~ 345 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKRMQ----HVFCVKYSMDSKYIISGSD-----------DGNVRLWKAK 345 (433)
T ss_pred EEEeecCCCcchhhhhHhhhh----eeeEEEEeccccEEEecCC-----------Ccceeeeecc
Confidence 9999984 5432222111112 2889999999999999997 9999999753
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=185.56 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=192.7
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-------EEEec----C------CCEeEEEE---------eCCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSIS----D------KHVQEIKI---------RSSS 238 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-------l~tl~----~------~~V~~Vaf---------s~s~ 238 (464)
-+.++++..++..|+++.||+.|+.|-||||++-.- .+... + ..|.++-+ +.+-
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 355557778778999999999999999999997541 11111 1 12444444 3368
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC-CeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~-~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
|+|+|+||..|-+...+|+-. ..|.+-+.+|-.- ..|++ |-.|-.|||=|+++|-|-++|.||.+.|.+|.|||-..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred cceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence 999999999999999888843 5666666666532 33444 55999999999999999999999999999999999988
Q ss_pred E-EEEEe-CCeEEEEeC-C-CceEEEeccCCCCcC---------CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 317 L-FLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHP---------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 317 l-laS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~---------~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
. ||||+ |++||+||+ + .-|..+|..|....+ ...|+.+||++||.+|++.+. |..+
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-----------d~r~ 270 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-----------DDRI 270 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------ccce
Confidence 6 56778 999999999 4 479888888873111 124899999999999999876 9999
Q ss_pred EEEeCCCCeEEEEEcc-----CCC--CC---------CcccccCCCCCCcc--ccccccccccccccccccCEEEEEEcC
Q 012410 384 NVSSILTGKCLAKINA-----TNC--SP---------KVDDELGSSSTGKS--KKLNKSSYIRSTVGEALEDITSLFYDE 445 (464)
Q Consensus 384 klWdi~tG~cl~tl~g-----h~~--~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~V~slafsp 445 (464)
++|+..+|+- +++. |+. ++ .+..+-+-+..+|- ...++..++|++. ++.|.+.+|-|
T Consensus 271 r~wn~~~G~n--tl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~ 345 (397)
T KOG4283|consen 271 RVWNMESGRN--TLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRP 345 (397)
T ss_pred EEeecccCcc--cccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc---cceeeEEeecC
Confidence 9999988863 1111 111 01 11122222333333 3344455566655 78999999999
Q ss_pred CCCEEEEeeCCCcEEecc
Q 012410 446 ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs~DgtVrlWd 463 (464)
|=+++++|+.|+.|.-|.
T Consensus 346 ~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred chhhhhccccCCcccccc
Confidence 999999999999998884
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=192.88 Aligned_cols=265 Identities=12% Similarity=0.145 Sum_probs=183.0
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--------CCCCC--cccceeeccccCceEEEEeC
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GKPDS--GFALFESESLKWPGFVEFDD 195 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--------G~~~~--~~~l~~~~~~~~~~~VaFs~ 195 (464)
..|++-|..+-|-|.+..++.+- +.. ..+.|||... |.+.. .+.+|+.+-. +++++.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~---t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~----glsWn~ 187 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATK---TSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY----GLSWNR 187 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEec---CCC------CCEEEEEeccCCCcccccccCCCceEEEeeccccc----cccccc
Confidence 45788899999999988776622 333 6889999732 22211 2333433211 477765
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
..--.|+||+.|++|.+||++.+..- +.. -.....+.+|...|..|+|.+.+...
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~-----------------~~~--------~~p~~~~~~h~~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKE-----------------DKV--------VDPKTIFSGHEDVVEDVAWHPLHEDL 242 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccC-----------------Ccc--------ccceEEeecCCcceehhhccccchhh
Confidence 44447889999999999998754321 000 01123355566778999999965555
Q ss_pred EEEEeCCCeEEEEECC--CCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCC
Q 012410 276 LLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 349 (464)
Q Consensus 276 lla~s~D~tIkIWDv~--tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~ 349 (464)
+.+.++|+.+.|||++ +.++.++-.+|...|.+++|+| ++.+|||+| |+||+|||++ -+++++|++|..-
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---- 318 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---- 318 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc----
Confidence 5557899999999999 6677788899999999999996 566889999 9999999994 7899999999987
Q ss_pred CeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 350 NTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 350 ~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
|..|-|||+-. .|||++ +|+.+.+||+..=.--++-.--...|-|..|+.-| |
T Consensus 319 -v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG-H------------- 372 (422)
T KOG0264|consen 319 -VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG-H------------- 372 (422)
T ss_pred -eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccChhhhccCCcceeEEecC-c-------------
Confidence 89999999765 555554 49999999984310000000000011111121111 1
Q ss_pred ccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 429 STVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
...|....|+|... +|+|.++|+.++||++
T Consensus 373 ------~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 373 ------TAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ------ccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 12788899999876 6899999999999974
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=204.90 Aligned_cols=238 Identities=11% Similarity=0.051 Sum_probs=183.5
Q ss_pred ceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 188 PGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
+.+|..+ |||..+|+|+ .|+.+++|+.+. .+. ..+.||..=-+.|-+...|...|.+
T Consensus 16 IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~--vl~------------------~~~~~~~~l~k~l~~m~~h~~sv~C 74 (942)
T KOG0973|consen 16 IFSIDVH-PDGVKFATGGQVLDGGIVIWSQDP--VLD------------------EKEEKNENLPKHLCTMDDHDGSVNC 74 (942)
T ss_pred EEEEEec-CCceeEecCCccccccceeecccc--ccc------------------hhhhhhcccchhheeeccccCceeE
Confidence 3478886 9999999999 899999998642 000 1112222112344555556688999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCC-------C-----------cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRN-------A-----------ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~t-------g-----------~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
|.|++ ++.++++||+|+-|.||+-.. | ++..+|++|.+.|..+.++||+.+|||++ |++|
T Consensus 75 VR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 75 VRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred EEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 99999 577888899999999999762 1 26779999999999999999999999999 9999
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC-CC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC-SP 404 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~-~~ 404 (464)
-|||. +.+++++|+||+.. |-.|.|-|-|++|||=++ |+|||+|++.+-.|.+.+.++-. .|
T Consensus 154 iiwn~~tF~~~~vl~~H~s~-----VKGvs~DP~Gky~ASqsd-----------Drtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSL-----VKGVSWDPIGKYFASQSD-----------DRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred EEEccccceeeeeeeccccc-----ccceEECCccCeeeeecC-----------CceEEEEEcccceeeEeeccchhhCC
Confidence 99998 69999999999998 788999999999999887 99999999888889999988765 33
Q ss_pred Ccc-----cccCCCCCCccc----ccccccc-----ccc---cccccccCEEEEEEcCC-------------CC----EE
Q 012410 405 KVD-----DELGSSSTGKSK----KLNKSSY-----IRS---TVGEALEDITSLFYDEE-------------RN----EI 450 (464)
Q Consensus 405 ~~~-----~~~~~~~~~~~~----~~~~~~~-----~~~---~~~~~l~~V~slafspD-------------g~----~L 450 (464)
.+. .=||+|.|+|+. +-..+.. .|. ..--+-..|..|.|+|- .+ ++
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 333 557788888772 2222222 233 11123348999999971 12 79
Q ss_pred EEeeCCCcEEecc
Q 012410 451 YTGNRHGLVHVWS 463 (464)
Q Consensus 451 aSgs~DgtVrlWd 463 (464)
|+||.|++|-||.
T Consensus 298 AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 298 AVGSQDRSLSVWN 310 (942)
T ss_pred EEecCCccEEEEe
Confidence 9999999999995
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=181.26 Aligned_cols=216 Identities=11% Similarity=0.162 Sum_probs=175.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~~l~tl~ 257 (464)
+||. +|.++||||.|.||+|+|+..-..+-++. .+.|..+.|.+ +.|+.|-+|+...-+++++|+
T Consensus 48 avAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 48 ALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred EEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 6776 58999999999999999999887776654 67899999954 589999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCc
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge 334 (464)
.|.+.|..|+..|- ++|+.+ +.|+.+++||+-+|+--.+++ .|. ...|.|+|.|..|+-+.-+.|-+|.+ +..
T Consensus 125 ~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~ 200 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRNKIDIYQLDNAS 200 (362)
T ss_pred ccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEeccEEEEEecccHh
Confidence 87788999999884 777775 899999999999998544332 232 34488999999998888667999998 466
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
+...++...- +-++-|- ++..|+.|.+ |+.|++||..++.|+..+.+|.+
T Consensus 201 v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~AH~~------------ 250 (362)
T KOG0294|consen 201 VFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLAHEN------------ 250 (362)
T ss_pred Hhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeecchh------------
Confidence 6655554421 2233333 5677777765 89999999999999999999997
Q ss_pred CCccccccccccccccccccccCEEEEE--EcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~sla--fspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|-+++ -.|++.+|+|+|.||.|++||.
T Consensus 251 ----------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 251 ----------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ----------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 777776 3789999999999999999984
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-19 Score=169.09 Aligned_cols=230 Identities=12% Similarity=0.162 Sum_probs=187.4
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCeE----------EEEec-CCCEeEEEEeC--------CCceeE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTM----------LYSIS-DKHVQEIKIRS--------SSHVPL 242 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~~----------l~tl~-~~~V~~Vafs~--------s~d~tI 242 (464)
+.+|+|. |+|++-|-||..+|.||--.. .+.. .++-+ .+.|+.+++|| +.|++|
T Consensus 35 irav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 35 IRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred eeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 3489996 999999999999999987432 1110 01111 35699999998 589999
Q ss_pred EEEEcCCCcEEE-----EEeeCCcceeeEEEEccC--CCeEEEE-e-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 243 KILSIEDGTVLK-----VFYHLLHRNKKVDFIEQF--NEKLLVK-Q-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 243 klWdi~tG~~l~-----tl~~~~~~~~~V~F~~~~--~~~lla~-s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
|+.-....+|.. .|+-|...++.++|.++. ++.||++ + .|..|.|=|..+|+-++.+.||+..+-++ ++-
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence 998776655553 355455789999998753 5677773 3 89999999999999999999999999887 899
Q ss_pred CCcEEEEEe-CCeEEEEeCC-CceEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-Ge~l~tl~g--H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|-+||||| |.|||.||++ ..|+.++.. |........|.+|+.-|.|++||||-. |.+--|+||.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc~lydir 261 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSCMLYDIR 261 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCceEEEEee
Confidence 999999999 9999999996 889988763 222111123889999999999999975 8889999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|+-++.+..|+. .|.+|-|||-..+|.++|-|..|||=|+
T Consensus 262 g~r~iq~f~phsa----------------------------------dir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 262 GGRMIQRFHPHSA----------------------------------DIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred CCceeeeeCCCcc----------------------------------ceeEEEeCCCceEEEEecccceEEEeec
Confidence 9999999999997 9999999999999999999999998653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=176.63 Aligned_cols=269 Identities=13% Similarity=0.057 Sum_probs=208.6
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
...+...+++-|-+|+|||.-+.++.+| |-| .+||+|++.. |++.. ....+ +-+.+-.|+|+ .||.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~Ws-ddgs 85 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWS-DDGS 85 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEc-cCCc
Confidence 3356677888999999999777777655 445 6999999966 67654 22222 33556689998 6999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEE-EecCCCEeEEEEe----------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLY-SISDKHVQEIKIR----------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs----------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.+.+|+-|+++|+|||.+++... -.++..|..+.|= .+-|+|||.||...-+.+.+++-. .+++..+-
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv 164 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV 164 (347)
T ss_pred eEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc
Confidence 99999999999999999998765 4568889998882 268999999999999999988743 67766664
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEE-Ec-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce--EEEeccC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELME-VS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL--VTSFEDH 342 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~--l~tl~gH 342 (464)
.- ..++++-.|+.|.+++++++.-.. .. ..-...+++|+.-+|++.+|-|| .|.+.|-.+ .+.. --+|+-|
T Consensus 165 ~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 165 LY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred cC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 22 456668899999999998876332 11 11123578999889999999999 999999999 4643 3377777
Q ss_pred CC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 343 LL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 343 ~~------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
.. -++ .||+|+|+|.-.+|++++. ||++..||-....-|++.+.|..
T Consensus 242 R~~~~~~~~VY--aVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~q-------------- 294 (347)
T KOG0647|consen 242 RSTNSVNDDVY--AVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHPQ-------------- 294 (347)
T ss_pred ccCCCCCCceE--EecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCCC--------------
Confidence 63 133 3899999999999999875 99999999877777777777765
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
.|++..|+.+|.++|=+
T Consensus 295 --------------------pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 295 --------------------PITCCSFNRNGSIFAYA 311 (347)
T ss_pred --------------------ccceeEecCCCCEEEEE
Confidence 89999999999988744
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=175.41 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=204.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
.|+..+.+.|-+|-|+|.++.|.+.| -| .+++++++..-++.. .+..+ ...-..+|- |-..++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD------gslrlYdv~~~~l~~---~~~~~--~plL~c~F~--d~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD------GSLRLYDVPANSLKL---KFKHG--APLLDCAFA--DESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc------CcEEEEeccchhhhh---heecC--Cceeeeecc--CCceEE
Confidence 45666889999999999888887733 55 699999987665432 23322 222378995 456788
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
+|+.|++||+.|+.+++-..... .+.|+.|.+++ +-|++||+||..+-.+.-++... ..|++++ ..+
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~---v~g 145 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMD---VSG 145 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEe---ccC
Confidence 89999999999999998877665 67899998864 68999999999864444444422 3444444 346
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc----eEEEeccCCCC
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLW 345 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge----~l~tl~gH~~~ 345 (464)
+.|++|..|..+.+||+++-..-..-+ .-...+++|++.|++.=+|.+| ||-|.+=.++ -+ ....|+-|-..
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 889999999999999999865433222 2235789999999999999999 9999887773 43 34477777652
Q ss_pred cCCC----CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 346 HPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 346 ~~~~----~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
..+. .||+|+|+|=-+++|+|+. ||-|.+||+.+.|-|+.|.....
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~~------------------- 275 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYET------------------- 275 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCCC-------------------
Confidence 2211 2899999999999999975 99999999999999999977754
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
.|-+++|+.||..||.|+.
T Consensus 276 ---------------SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 ---------------SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---------------ceEEEEeccCCCeEEEEec
Confidence 7999999999999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-19 Score=189.63 Aligned_cols=303 Identities=12% Similarity=0.201 Sum_probs=231.3
Q ss_pred cceeehhccCCeEEeeeccc----ccEeeEeecCCCceEEEEEEee------------CCCEEEEEEeecCCCCccccee
Q 012410 98 RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------------NNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~----g~~l~~ln~~~~~~i~Sv~fs~------------~g~~l~svSa~~sddfs~L~~~ 161 (464)
.+-|.....|.-+.+||+.+ |+.-..| +|..-||+|--=| -| -+++ ++.| .
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~T----CSsD------~ 402 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRG-CFTT----CSSD------G 402 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCcc-ceeE----ecCC------C
Confidence 67777788888999999776 4444444 7999999997655 22 2455 3334 5
Q ss_pred eEEEEEeccCCCCC---------------------------cccceeec------cccCceEEEEeCCCCcEEEEecCCC
Q 012410 162 STKIEYIRRGKPDS---------------------------GFALFESE------SLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 162 ti~l~~i~~G~~~~---------------------------~~~l~~~~------~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
||+||+++-+--+. +..+|... ...-..+|+.| ||||.||||.--|
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLASGDRGG 481 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceecccCccC
Confidence 99999986522111 12222211 01112269997 9999999999999
Q ss_pred cEEEEeCCCCeEEEEe--cCCCEeEEEEe-----------CCCceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccC-C
Q 012410 209 IYKVFDLKNYTMLYSI--SDKHVQEIKIR-----------SSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQF-N 273 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl--~~~~V~~Vafs-----------~s~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~-~ 273 (464)
+++|+||.+-+.+.++ ++..|.++.|| ++.|.-|.++|+.-. -+++||.+|...+.+|.|...+ +
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 9999999976655444 36789999995 368899999999633 3557888887889999998854 3
Q ss_pred CeEEEEeCCCeEEEEECCC----CcEEEEcccC----CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 274 EKLLVKQENENLQILDVRN----AELMEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~t----g~~l~~l~gh----~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
-++++.+.|+.|.. ++.. |.. ..++| ..+++.++.-|..+++++++ |+.|+|+|+ .|+.+++|+|..
T Consensus 562 ~~MiscGADksimF-r~~qk~~~g~~--f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 562 RKMISCGADKSIMF-RVNQKASSGRL--FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred eEEEeccCchhhhe-ehhccccCcee--ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 57788889998853 4333 222 12222 13678888999999999999 999999999 699999999765
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.-.-+ .-.|..-|.|-|||+.|. |.|+-+.|..+|+|+++..||+.
T Consensus 639 ~~eG~--lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHsE--------------------- 684 (1080)
T KOG1408|consen 639 DHEGD--LIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHSE--------------------- 684 (1080)
T ss_pred cCCCc--eEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcch---------------------
Confidence 43222 457889999999999996 99999999999999999999996
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+.+-|.+|-+.|+|.|.||.|-||.+
T Consensus 685 -------------~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 685 -------------AVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -------------heeeeeecccchhheeecCCceEEEEEC
Confidence 8999999999999999999999999964
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=196.39 Aligned_cols=229 Identities=11% Similarity=0.126 Sum_probs=184.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEe--cCCCEeEEEE------eCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKI------RSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl--~~~~V~~Vaf------s~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.|+|+ |+|..|.+++.|+-||+|+...- +.-.++ .+..|.+++- ..+.+++|.+..+..|+.-..|.-..
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft 96 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT 96 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeee
Confidence 79996 89999999999999999986544 222333 2456777776 24688999999998776543333222
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
-+.+.++|+- ++..+++||+|-.|||-++..+--..++++|...|.++.|.|+|.+||+++ ||+|++||+ +|.|..+
T Consensus 97 lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 97 LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 5678899987 466777799999999999999999999999999999999999999999999 999999999 6999998
Q ss_pred eccCCCC---cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 339 FEDHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 339 l~gH~~~---~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
|.+=..- ...-.+.-++|+|+|-.+|-.+- |++|++++..++..+.+|+....+
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s------------ 232 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS------------ 232 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc------------
Confidence 8763221 00001457999999766666665 999999999999999999774430
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+..+.|||.|++||++.-||.|-|||
T Consensus 233 --------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 233 --------------------SKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred --------------------cceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1478899999999999999999999998
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=188.83 Aligned_cols=242 Identities=12% Similarity=0.150 Sum_probs=164.1
Q ss_pred EEEEeccceeehhcc-----CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 92 IEIVAARDIVFALAH-----SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~-----~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..++|...|.++... +..+.+|| .+|.....+.. +...+.++.|||||+.|+.+|.. ..+ .++.+|
T Consensus 163 ~~g~f~~ria~v~~~~~~~~~~~i~i~d-~dg~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~-~~~------~~i~i~ 233 (429)
T PRK01742 163 IRGAFRTRIAYVVQKNGGSQPYEVRVAD-YDGFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFE-NKK------SQLVVH 233 (429)
T ss_pred CCCccCCEEEEEEEEcCCCceEEEEEEC-CCCCCceEecc-CCCccccceEcCCCCEEEEEEec-CCC------cEEEEE
Confidence 345666666665543 35888898 56776777744 66779999999999999987632 223 589999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .... ..++...++|+ |||+.|++++ .|+.++||. |
T Consensus 234 dl~tg~~~----~l~~-~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~------------------------------~ 277 (429)
T PRK01742 234 DLRSGARK----VVAS-FRGHNGAPAFS-PDGSRLAFASSKDGVLNIYV------------------------------M 277 (429)
T ss_pred eCCCCceE----EEec-CCCccCceeEC-CCCCEEEEEEecCCcEEEEE------------------------------E
Confidence 99888742 1111 11344478997 8999998865 566655553 3
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
|+.+|++ ..+..+...+..++|+|+ +.+|+..+ .++..+||++.. +...+.+ ++.. ....|||||+.|+..+
T Consensus 278 d~~~~~~-~~lt~~~~~~~~~~wSpD-G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 278 GANGGTP-SQLTSGAGNNTEPSWSPD-GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred ECCCCCe-EeeccCCCCcCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 3333332 223322234567889884 66677655 688899998654 2223333 3433 4567999999999888
Q ss_pred CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEEEcc
Q 012410 323 NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG~cl~tl~g 399 (464)
++.++ ||+ +|++......+. ..++.|+|||++|+.++. ++.+++|++ .+|+++++|.+
T Consensus 353 ~~i~~-~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~-----------~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 353 DNVVK-QDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST-----------QGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCEEE-EECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc-----------CCCceEEEEEECCCCceEEccC
Confidence 76554 998 687654333322 346889999999999886 788888876 47999999998
Q ss_pred CCC
Q 012410 400 TNC 402 (464)
Q Consensus 400 h~~ 402 (464)
|..
T Consensus 414 ~~g 416 (429)
T PRK01742 414 SDG 416 (429)
T ss_pred CCC
Confidence 876
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=187.97 Aligned_cols=273 Identities=14% Similarity=0.128 Sum_probs=218.3
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCC--CCcccceeeccccCceEEEEeCCC
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKP--DSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~--~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
+.+| .|.++|-.+..|...+.+.| ++- +-||||||.. |.- ...+.-++.+ .++.++... ||
T Consensus 413 ~~tL--~HGEvVcAvtIS~~trhVyT----gGk-------gcVKVWdis~pg~k~PvsqLdcl~rd--nyiRSckL~-pd 476 (705)
T KOG0639|consen 413 INTL--AHGEVVCAVTISNPTRHVYT----GGK-------GCVKVWDISQPGNKSPVSQLDCLNRD--NYIRSCKLL-PD 476 (705)
T ss_pred hhhh--ccCcEEEEEEecCCcceeEe----cCC-------CeEEEeeccCCCCCCccccccccCcc--cceeeeEec-CC
Confidence 4454 58999999999999998877 444 5899999833 221 1112222222 445588886 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEE--Eec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~--tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
|+.|..|+.-.|+-||||...+.-- .|. .-..+.+++||+ .|+.|.|||+.+..+++.|++|...+.+
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 556 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence 9999999999999999999766532 232 234566666664 8999999999999999999998899999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~ 343 (464)
|+.+. ++-+|-+|+-|.|||.||+++|.-++. .. ...|.++-.+|.+..+|.|- ++.|.|-..+|.....|.-|.
T Consensus 557 Idis~-dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe 633 (705)
T KOG0639|consen 557 IDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE 633 (705)
T ss_pred EEecC-CCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccc
Confidence 99877 588999999999999999999875432 11 24688888899999999999 999999888888888888887
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.- |-++-|.+=|++.+|.++ |.-++.|...-|.-|-..+..+
T Consensus 634 Sc-----VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S---------------------- 675 (705)
T KOG0639|consen 634 SC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS---------------------- 675 (705)
T ss_pred cE-----EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC----------------------
Confidence 75 899999999999999998 9999999987777766554443
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+...|-|.++|+|||.|+...|+.
T Consensus 676 -------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 -------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred -------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 799999999999999999998777653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=181.70 Aligned_cols=285 Identities=13% Similarity=0.168 Sum_probs=216.4
Q ss_pred ccEeeEeecCCC--ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-ccc-CceEEEE
Q 012410 118 NRRICFLNVSPD--EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLK-WPGFVEF 193 (464)
Q Consensus 118 g~~l~~ln~~~~--~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~-~~~~VaF 193 (464)
-++|+..|.+|. ..|.||-|.|.-..|.+ ++.| ++++|..| .|+.+. ..++- ..+ .+...+|
T Consensus 200 ~krlkDaNa~~ps~~~I~sv~FHp~~plllv----aG~d------~~lrifqv-DGk~N~---~lqS~~l~~fPi~~a~f 265 (514)
T KOG2055|consen 200 IKRLKDANAAHPSHGGITSVQFHPTAPLLLV----AGLD------GTLRIFQV-DGKVNP---KLQSIHLEKFPIQKAEF 265 (514)
T ss_pred eEeecccccCCcCcCCceEEEecCCCceEEE----ecCC------CcEEEEEe-cCccCh---hheeeeeccCccceeee
Confidence 346666776554 46999999999999999 5677 89999885 556543 12211 112 2236899
Q ss_pred eCCCCc-EEEEecCCCcEEEEeCCCCeEEEE-----ecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeC
Q 012410 194 DDVNGK-VLTYSAQDSIYKVFDLKNYTMLYS-----ISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 194 s~pdGk-~LaSgs~D~tiKlWdl~tg~~l~t-----l~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~ 259 (464)
. |+|+ .+.+++...-+-.|||.+++..+. .....+...++|++ ..+-|.|+...|++.+.+|+-.
T Consensus 266 ~-p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 266 A-PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred c-CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec
Confidence 7 8999 899999999999999999886432 22234556666663 5578999999999999999854
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC------
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF------ 331 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~------ 331 (464)
+.+..+.|+. ++..|++.+.+|.|.+||+++..|++.+.... -.-.+++.|++|++||+|| -|-|-|+|.
T Consensus 345 -G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 345 -GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred -cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 7789999997 46778888899999999999999999876542 2335788899999999999 999999993
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.-+.++++..-... |.++.|+||+++||.+|. ..+.++||=.+.+-. ++ ++
T Consensus 423 ~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~T---VF---sN-------- 474 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCT---VF---SN-------- 474 (514)
T ss_pred CCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhh---------ccccceEEEecccee---ee---cc--------
Confidence 13456666555544 889999999999999885 347889998765422 22 22
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|...+..+..|++++|||.|-.||-|+++|.|+||.+
T Consensus 475 -----------------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 475 -----------------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred -----------------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 2233344559999999999999999999999999963
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=175.60 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=172.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEE-e--cCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYS-I--SDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~t-l--~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~ 257 (464)
.++||+...-.|+.||.|+|||+|++++ |+..-. . ++..|.+++++. +-|+.+|+||+++|+..+.-.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence 7999843666777899999999999996 555421 1 157888888864 588999999999998776655
Q ss_pred eCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc
Q 012410 258 HLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge 334 (464)
|. ..++.+.|++..+- -|++||.|+|||.||.++.+.+.++.=- +.+++.. -...+++.+. ++.|.+++++ +.
T Consensus 112 Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~D--v~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 112 HD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAAD--VLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred cc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehh--ccCceeEEEecCCcEEEEEcCCCc
Confidence 54 88999999986543 3455899999999999999988775522 3455543 3344566666 9999999994 33
Q ss_pred -eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--eEEEEEccCCCCCCcccccC
Q 012410 335 -LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 -~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gh~~~~~~~~~~~ 411 (464)
..+..+-...|. +++|+.-+|++..|-||- .|.+-|-.|..+ +---+|+.|..
T Consensus 188 te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~--------- 243 (347)
T KOG0647|consen 188 TEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS--------- 243 (347)
T ss_pred chhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc---------
Confidence 333444444453 889999999998888887 888999888877 44557777864
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+. .+. ..-.|.+|+|+|.-.+|+|++.||++-.||
T Consensus 244 -~~~--~~~-------------~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 244 -TNS--VND-------------DVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred -CCC--CCC-------------ceEEecceEeecccceEEEecCCceEEEec
Confidence 000 000 122899999999999999999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=182.19 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=239.6
Q ss_pred hhhhccccc-eEEEEec---cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc
Q 012410 82 LPFLMKRTK-VIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (464)
Q Consensus 82 l~~l~~~s~-v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~ 157 (464)
++++...-. +..+.-. =|-|..+++.|-.++|++.+|+.+++++. +..-|.++--+|==+.+|+ |-.+
T Consensus 152 ~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVai----G~~~--- 223 (910)
T KOG1539|consen 152 STFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAI----GLEN--- 223 (910)
T ss_pred ceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEE----eccC---
Confidence 455555544 4444444 23345678999999999999999999976 5577999999997777776 7777
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEE
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIK 233 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Va 233 (464)
++|-|.+++.++.+.+|+.= .+.+.+++|. .||. +||+|..-|.+-+|||+.-+++..+. .+.|....
T Consensus 224 ---G~ViifNlK~dkil~sFk~d----~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 224 ---GTVIIFNLKFDKILMSFKQD----WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred ---ceEEEEEcccCcEEEEEEcc----ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 89999999999975443321 2455589997 6876 57778888999999999888765444 23444444
Q ss_pred E--------eCCCceeEEEEEcC--CC--cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEE---------------
Q 012410 234 I--------RSSSHVPLKILSIE--DG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ--------------- 286 (464)
Q Consensus 234 f--------s~s~d~tIklWdi~--tG--~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIk--------------- 286 (464)
| +.+.|..+|+|=.. +| ..|+.=.+|..+-..|.|-...+..+++.+.|.|.+
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 4 44677888888443 44 334433355555567777654445555555565544
Q ss_pred --------------------------------------------------EEECCCCcE-EEEcccC-----CCceEEEE
Q 012410 287 --------------------------------------------------ILDVRNAEL-MEVSRTE-----FMTPSAFI 310 (464)
Q Consensus 287 --------------------------------------------------IWDv~tg~~-l~~l~gh-----~~~v~sv~ 310 (464)
-|+.++... ..+|..- ...+.||+
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 366555443 2333322 14678888
Q ss_pred EcCCCcEEEEEe-CCeEEEEeC-CCceEEEe---ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 311 FLYENQLFLTFR-NRTVAVWNF-RGELVTSF---EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~-~Ge~l~tl---~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
.|+=|+...-|+ .|+|.++|. .|-...+| ..|... |..|+.---+++++|++. ||-++.
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~-----V~gla~D~~n~~~vsa~~-----------~Gilkf 519 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE-----VTGLAVDGTNRLLVSAGA-----------DGILKF 519 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc-----eeEEEecCCCceEEEccC-----------cceEEE
Confidence 999999888888 999999999 59988999 478777 889999888999999986 999999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccc----cc----cccCEEEEEEcCCCCEEEEeeCCC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV----GE----ALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~l~~V~slafspDg~~LaSgs~Dg 457 (464)
||..++..+++++--.. +....-.|.....|..--+..+.+-..+ -+ +-..|+++.|||||+.|+|++.|+
T Consensus 520 w~f~~k~l~~~l~l~~~-~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSS-ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred EecCCcceeeeeccCCC-cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 99988877777643222 1111111111111121122222222211 12 223899999999999999999999
Q ss_pred cEEeccC
Q 012410 458 LVHVWSN 464 (464)
Q Consensus 458 tVrlWd~ 464 (464)
+||+||.
T Consensus 599 tIr~wDl 605 (910)
T KOG1539|consen 599 TIRTWDL 605 (910)
T ss_pred cEEEEec
Confidence 9999994
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=167.97 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=175.4
Q ss_pred hccCCeEEeeeccc-cc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccc
Q 012410 104 LAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFAL 179 (464)
Q Consensus 104 l~~~g~~~~~~~~~-g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l 179 (464)
-..++.+.+|++.+ |+ .+..+. .......++++|+|+.|.+++ ..+ ..+.+|++. .|++.. .
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~--~~~-------~~i~~~~~~~~g~l~~---~ 73 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGV--RPE-------FRVLSYRIADDGALTF---A 73 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEE--CCC-------CcEEEEEECCCCceEE---e
Confidence 35788999999864 43 455553 223467889999999998744 333 477788885 444310 0
Q ss_pred eeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe
Q 012410 180 FESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 180 ~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~ 257 (464)
-+....++|..|+|+ |||+.|.+++. ++.|.+||+.+ |... +.+..+.
T Consensus 74 ~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----------------------------~~~~~~~ 123 (330)
T PRK11028 74 AESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPV-----------------------------APIQIIE 123 (330)
T ss_pred eeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCC-----------------------------Cceeecc
Confidence 111123567799997 89998887764 78899998753 2211 0111111
Q ss_pred eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEE------EcccCCCceEEEEEcCCCcEEEEEe--CCeEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME------VSRTEFMTPSAFIFLYENQLFLTFR--NRTVA 327 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~------~l~gh~~~v~sv~FspdgqllaS~s--D~TIk 327 (464)
+. .....++|+| ++..++++. .+++|.+||+.+ |++.. .... ...+..++|+|||+++.+.. +++|.
T Consensus 124 ~~-~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 124 GL-EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVD 200 (330)
T ss_pred CC-CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEE
Confidence 11 1234577877 456676655 789999999987 43321 1111 24588899999999987776 89999
Q ss_pred EEeCC---Cc--eEEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~---Ge--~l~tl~gH~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+||++ |+ +++++..+.. ..+. ....+.|+|||++|+.++. .+++|.+|++.+..-..++.+|
T Consensus 201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~lyv~~~----------~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 201 VWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHLYACDR----------TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEEEEecC----------CCCeEEEEEEeCCCCeEEEeEE
Confidence 99983 43 3555543211 0000 0346899999999998754 3789999998654322344444
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
... + ...+.++|+|||+.|++++. +++|.+|+
T Consensus 270 ~~~---------~----------------------~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 270 QPT---------E----------------------TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred Eec---------c----------------------ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 320 0 03456899999999998886 99999995
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=173.21 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=164.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe----EEEEe--cCCCEeEEEE-eC---------CCceeEEEEEcC----C
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKHVQEIKI-RS---------SSHVPLKILSIE----D 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~----~l~tl--~~~~V~~Vaf-s~---------s~d~tIklWdi~----t 249 (464)
.|.|+ +.|+.+|+||.|+++||||....+ |--.. ++..|+-|.+ +| +.|+|++||.=. .
T Consensus 18 dVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 18 DVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 79996 899999999999999999976433 22222 2677999998 33 699999999641 1
Q ss_pred -----CcEEEEEeeCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCC-Cc-----EEEEcc-------cCCCceEEEE
Q 012410 250 -----GTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AE-----LMEVSR-------TEFMTPSAFI 310 (464)
Q Consensus 250 -----G~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~t-g~-----~l~~l~-------gh~~~v~sv~ 310 (464)
-....+|......|..|.|.|..-| +|++.+.||++||++.-. .+ +.+.++ .+...-.+|.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1234566655567899999996644 555578999999997543 22 222222 2334455677
Q ss_pred EcC---CCcEEEEEeCC------eEEEEeC-C-C-ce--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCc
Q 012410 311 FLY---ENQLFLTFRNR------TVAVWNF-R-G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPE 372 (464)
Q Consensus 311 Fsp---dgqllaS~sD~------TIklWd~-~-G-e~--l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~~~~~ 372 (464)
++| .-++||.|+|. .++||.. + | ++ +.+|.||... |.+|+|.|+ =.+||.+|+
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~k---- 247 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVATK---- 247 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEeec----
Confidence 775 45789999966 8999998 3 6 44 4489999988 889999996 468999998
Q ss_pred cccccCCCCeEEEEeCCCCeE---------------------EEEEccCCCCCCcccccCCCCCCccccccccccccccc
Q 012410 373 DQWMEGSAGSINVSSILTGKC---------------------LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 431 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~c---------------------l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (464)
|| |+||++.. .| +..+.+|++
T Consensus 248 -------Dg-v~I~~v~~-~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~----------------------------- 289 (361)
T KOG2445|consen 248 -------DG-VRIFKVKV-ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG----------------------------- 289 (361)
T ss_pred -------Cc-EEEEEEee-ccchhhhhcccCCCCccccceEEeeeccCCCC-----------------------------
Confidence 99 99999853 22 223334443
Q ss_pred cccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 432 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 432 ~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||.+.|+--|.+|+|.+.||+||||.
T Consensus 290 -----~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 290 -----EVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred -----ceEEEEEeeeeeEEeecCCCceeeehh
Confidence 899999999999999999999999995
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=175.79 Aligned_cols=268 Identities=11% Similarity=0.147 Sum_probs=213.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccc-----------------c-cEeeEeecCCCceEEEEEEeeCCCEEEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRET-----------------N-RRICFLNVSPDEVIRSLFYNKNNDSLITVS 148 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~-----------------g-~~l~~ln~~~~~~i~Sv~fs~~g~~l~svS 148 (464)
++.+...++ |.++|+++.|--|+++|++. + -.|.+| --|.+.|..|.|.|-..+||+
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS-- 189 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILIS-- 189 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEe--
Confidence 455555565 99999999999999999871 1 246777 458888999999999999999
Q ss_pred eecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---
Q 012410 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--- 225 (464)
Q Consensus 149 a~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--- 225 (464)
++.| .++|+.|+..--....++.|+.. -.+.++.|. |.|.+|+-|.+--+++|+|++|+||..+-.
T Consensus 190 --~srD------~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 190 --GSRD------NTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --ccCC------CeEEEEecccHHHHHHHHHhhcc--ceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 5666 79999998554444566777642 123389996 999999999999999999999999976432
Q ss_pred --CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC
Q 012410 226 --DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 293 (464)
Q Consensus 226 --~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg 293 (464)
.+.|.+|.+|+ +.|+-|||||=-+++|+.||. |....+-+..|.. ++.++|+++.|.++|||.+.||
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCC
Confidence 46799999986 589999999999999999998 5556778888977 4677888899999999999999
Q ss_pred cEEEEcccC-----CCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEEEECCCCCEEE
Q 012410 294 ELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 294 ~~l~~l~gh-----~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~La 364 (464)
.++++..|- +..-...+|+..-.+++.-. .+.+--||. ++..++-+. ||.+. ++.+.=||.+--++
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVEPAFM 412 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCCCcee
Confidence 999977653 12223344777666666655 567778998 566555443 89887 78899999999999
Q ss_pred EEecCCCccccccCCCCeEEEEe
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWd 387 (464)
++|. |-.+|.|-
T Consensus 413 Tcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 413 TCSD-----------DFRARFWY 424 (430)
T ss_pred eecc-----------cceeeeee
Confidence 9987 99999995
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=178.60 Aligned_cols=244 Identities=20% Similarity=0.217 Sum_probs=167.6
Q ss_pred cEEEEecCCCc-EEEEeCCCCeEEEEecCC-C--------Ee-EEEEeCC-CceeEEEEEcCCCcEEE-EEeeCCcceee
Q 012410 199 KVLTYSAQDSI-YKVFDLKNYTMLYSISDK-H--------VQ-EIKIRSS-SHVPLKILSIEDGTVLK-VFYHLLHRNKK 265 (464)
Q Consensus 199 k~LaSgs~D~t-iKlWdl~tg~~l~tl~~~-~--------V~-~Vafs~s-~d~tIklWdi~tG~~l~-tl~~~~~~~~~ 265 (464)
-+..++|.|.. +.+||++||..+.++... . |. +-..+.. .---|-+|.+..-.... .+. ..+.+..
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~a 86 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHA 86 (476)
T ss_pred EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcc-cccceee
Confidence 35566777776 999999999988776532 1 11 0001111 22258889885322222 111 1245677
Q ss_pred EEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC----------CC
Q 012410 266 VDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----------RG 333 (464)
Q Consensus 266 V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----------~G 333 (464)
++-+|. +.+|.+| .-+.|.||.+.+|+++.++.+|.+.|+.+.|+.||.+|.|+| |+-|.+|.+ +-
T Consensus 87 l~s~n~--G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 87 LASSNL--GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eecCCC--ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 776663 5666655 999999999999999999999999999999999999999999 999999983 13
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCC--CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpD--g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
+.+..|.+|+.. |.++.+++- .-.|+|+|. |.|||+||+..|..|.++---.. ++....++
T Consensus 165 ~p~~~f~~Htls-----ITDl~ig~Gg~~~rl~TaS~-----------D~t~k~wdlS~g~LLlti~fp~s-i~av~lDp 227 (476)
T KOG0646|consen 165 KPLHIFSDHTLS-----ITDLQIGSGGTNARLYTASE-----------DRTIKLWDLSLGVLLLTITFPSS-IKAVALDP 227 (476)
T ss_pred cceeeeccCcce-----eEEEEecCCCccceEEEecC-----------CceEEEEEeccceeeEEEecCCc-ceeEEEcc
Confidence 468899999998 677777664 356777765 99999999999999998743321 22111111
Q ss_pred ----------CCCCCccccccccc----------------ccccccc-ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 ----------SSSTGKSKKLNKSS----------------YIRSTVG-EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ----------~~~~~~~~~~~~~~----------------~~~~~~~-~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|. +.-....... .+...++ +.=..|++|++|-||..|+||+.||+|.|||
T Consensus 228 ae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 228 AERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 111 0011111111 1111122 1113899999999999999999999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=173.29 Aligned_cols=221 Identities=16% Similarity=0.182 Sum_probs=174.3
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcC
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIE 248 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~ 248 (464)
++|+.+...+++. +|.+.+-.++|++-|...|||||.|.||+||++-.+-+...+
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------ 120 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------ 120 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------------------
Confidence 7888887777665 244444479999889999999999999999998654443322
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
-+....|.+|..+|.-|++.|--..-||+++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|+|.+ |+.||
T Consensus 121 -tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 121 -TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred -ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeE
Confidence 155677888888999999999767788889999999999999999988888 999999999999999999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEEccCCCC
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gh~~~ 403 (464)
|||. +|+.+..-.+|..--+ . -+.|-.+|+ |++.+. +.-++..|-|||-.+ .--+.+|...+
T Consensus 199 v~dpr~~~~v~e~~~heG~k~---~-Raifl~~g~-i~tTGf-------sr~seRq~aLwdp~nl~eP~~~~elDtSn-- 264 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKP---A-RAIFLASGK-IFTTGF-------SRMSERQIALWDPNNLEEPIALQELDTSN-- 264 (472)
T ss_pred EEcCCCCcEeeecccccCCCc---c-eeEEeccCc-eeeecc-------ccccccceeccCcccccCcceeEEeccCC--
Confidence 9999 6999998888887533 2 355778999 555554 234589999998533 33344443332
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.|.==+|+||.+.|| +|-.|+.||.+.
T Consensus 265 ---------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 265 ---------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ---------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 576679999999998 555899999763
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=174.04 Aligned_cols=199 Identities=14% Similarity=0.285 Sum_probs=139.0
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-----EEE-EecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLY-SISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-----~l~-tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+..|+|| .|||.||+++.|++|+|||++.-+ |++ ++.-+.-..|+|+|+- ..|-+| +..|.-|..+.-
T Consensus 89 vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc-~s~vv~-~~~g~~l~vyk~--- 162 (420)
T KOG2096|consen 89 VTDVAFS-SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC-KSVVVS-VKRGNKLCVYKL--- 162 (420)
T ss_pred eeeeEEc-CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc-ceEEEE-EccCCEEEEEEe---
Confidence 3379998 799999999999999999988632 221 2332344556666541 122222 223433332220
Q ss_pred ceeeEEEEccCCCeEEEEeCCC----eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 336 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~----tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l 336 (464)
.+.+|| +.-=|| -++.-+-|+..+-.+-.-..+.+|+|++ |.+|-||++.|++|
T Consensus 163 ----------------~K~~dG~~~~~~v~~D-----~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L 221 (420)
T KOG2096|consen 163 ----------------VKKTDGSGSHHFVHID-----NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL 221 (420)
T ss_pred ----------------eecccCCCCccccccc-----ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee
Confidence 111121 111122 1122234555555666778999999999 99999999999999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---C-----eEEEEEccCCCCCCccc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---G-----KCLAKINATNCSPKVDD 408 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G-----~cl~tl~gh~~~~~~~~ 408 (464)
.+..-.+.. -...+.||||++||+++. ---||+|.+-= | +-+-.|+||+.
T Consensus 222 ~~idtnq~~-----n~~aavSP~GRFia~~gF-----------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s------ 279 (420)
T KOG2096|consen 222 QSIDTNQSS-----NYDAAVSPDGRFIAVSGF-----------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS------ 279 (420)
T ss_pred eeecccccc-----ccceeeCCCCcEEEEecC-----------CCCceEEEEEeccCcchhhhhhhheeccchh------
Confidence 999877765 345789999999999987 56799998632 2 23457889987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+++|||+...++|.|.||++||||
T Consensus 280 ----------------------------aV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 280 ----------------------------AVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred ----------------------------heeeeeeCCCcceeEEEecCCcEEEee
Confidence 899999999999999999999999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=186.21 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=177.6
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCC
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDS 208 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~ 208 (464)
-+|+|+.||||+.||+ + | .|.++++.++..=...-...-|+.|++ +++||.|+ -++|||+|.|.
T Consensus 461 G~R~~~vSp~gqhLAs----G-D-----r~GnlrVy~Lq~l~~~~~~eAHesEil----cLeyS~p~~~~kLLASasrdR 526 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLAS----G-D-----RGGNLRVYDLQELEYTCFMEAHESEIL----CLEYSFPVLTNKLLASASRDR 526 (1080)
T ss_pred ceEEEEECCCcceecc----c-C-----ccCceEEEEehhhhhhhheecccceeE----EEeecCchhhhHhhhhccCCc
Confidence 5899999999999998 3 3 258899999866555434455666655 88998664 47899999999
Q ss_pred cEEEEeCC-CCeEEEEecC--CCEeEEEEeC----------CCceeEEEEEcC---CCcEEEEEeeC--CcceeeEEEEc
Q 012410 209 IYKVFDLK-NYTMLYSISD--KHVQEIKIRS----------SSHVPLKILSIE---DGTVLKVFYHL--LHRNKKVDFIE 270 (464)
Q Consensus 209 tiKlWdl~-tg~~l~tl~~--~~V~~Vafs~----------s~d~tIklWdi~---tG~~l~tl~~~--~~~~~~V~F~~ 270 (464)
-|.|+|++ +|.++.||.+ ..|.+|+|-. ..|+.|..=..+ +|.....-.+. ....+.++.-|
T Consensus 527 lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 527 LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC
Confidence 99999998 7888889874 5799999943 345544332111 13221111110 02336666545
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEccc---CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
.-+.+++++.|++|+|+|+++|+..++++| |...+..|..-|-|-++|++. |+|+-+.|+ +|||+.+..||..-
T Consensus 607 -~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 -TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred -CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 346777789999999999999999998865 666788899999999999999 999999999 89999999999987
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|..+-|++|-+.|+|.+. ||.|-||.+..
T Consensus 686 -----VTG~kF~nDCkHlISvsg-----------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 -----VTGVKFLNDCKHLISVSG-----------DGCIFVWKLPL 714 (1080)
T ss_pred -----eeeeeecccchhheeecC-----------CceEEEEECch
Confidence 889999999999999986 99999999853
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=193.04 Aligned_cols=222 Identities=12% Similarity=0.206 Sum_probs=177.0
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCC---CeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEE
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~t---g~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl 256 (464)
|++..-+.++||+++..+.|-+|||.- -++++.+. ...|..+.|++ +.|++||+||+..-.-..|+
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 555445668999999999999999986 44555554 45688888854 79999999999988888888
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 333 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G 333 (464)
.+....++.|.|+|..+.+++++.+.|++++||++. .+|...+..|...|..+.++|++.+||||+ |++|||||.+ +
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 887788899999998777888889999999999987 668889999999999999999999999999 9999999996 4
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~~ 411 (464)
+.-....=|+.. .|.-|.|-|+-. .||+++. ..|-.|+||||.--- .-+++..|++
T Consensus 253 ~~~~~~tInTia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~~--------- 310 (839)
T KOG0269|consen 253 RAKPKHTINTIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHTD--------- 310 (839)
T ss_pred CccceeEEeecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccCc---------
Confidence 432222223332 278899999765 5666554 458999999985422 3478888987
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEeeCCCcE
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 459 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtV 459 (464)
.|+.++|.. |...|-|+|.||+|
T Consensus 311 -------------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 -------------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -------------------------cccceeccCCCceeeEeecCccHH
Confidence 667777754 67788999999986
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=176.55 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=171.6
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+.+|.+..-.....- .--.+.|.+++-+|+|.+|+. +... +.+.||.+.+|.++..+. .|...+
T Consensus 62 ~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~a----g~i~------g~lYlWelssG~LL~v~~----aHYQ~I 126 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLA----GTIS------GNLYLWELSSGILLNVLS----AHYQSI 126 (476)
T ss_pred cccccccCchhhhhhh-cccccceeeeecCCCceEEEe----eccc------CcEEEEEeccccHHHHHH----hhccce
Confidence 6677754332222211 112356999999999998877 5466 789999999999975432 233445
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCc---eeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSH---VPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d---~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
..+.|+ .||.+|.|||.|+-|.+|++-+ + ++++.| .|+.+|+-+ .-.|..
T Consensus 127 TcL~fs-~dgs~iiTgskDg~V~vW~l~~------l---------v~a~~~~~~~p~~~f~~H-----------tlsITD 179 (476)
T KOG0646|consen 127 TCLKFS-DDGSHIITGSKDGAVLVWLLTD------L---------VSADNDHSVKPLHIFSDH-----------TLSITD 179 (476)
T ss_pred eEEEEe-CCCcEEEecCCCccEEEEEEEe------e---------cccccCCCccceeeeccC-----------cceeEE
Confidence 589998 6999999999999999998632 1 233333 344444433 223322
Q ss_pred --EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-----------
Q 012410 266 --VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----------- 331 (464)
Q Consensus 266 --V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----------- 331 (464)
+.+.+ -+.+++++|+|.|+|+||+..|.++.+..-- ..+.+++..|-...+-.|. +|.|-+=++
T Consensus 180 l~ig~Gg-~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 180 LQIGSGG-TNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred EEecCCC-ccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 22222 2478999999999999999999998865533 4688999999999988888 998877664
Q ss_pred ------CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 332 ------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 332 ------~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.++-+..|.||.+.- .|..++++-||.+|+||+. ||+|.|||+.+-|||+++..
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~---~ITcLais~DgtlLlSGd~-----------dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENES---AITCLAISTDGTLLLSGDE-----------DGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred ccccccccceeeeeccccCCc---ceeEEEEecCccEEEeeCC-----------CCCEEEEecchHHHHHHHhh
Confidence 234567899999831 2889999999999999987 99999999999999999964
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=178.05 Aligned_cols=202 Identities=10% Similarity=0.138 Sum_probs=160.4
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
+..-|.|-.++|+++..+.|-|||.....-.... .+ .+.|+ .+|.+|...-+++.|++
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----~~-~~~Pd----------------l~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----SG-ECRPD----------------LRLKGHEKEGYGLSWNR 187 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-----cc-cCCCc----------------eEEEeeccccccccccc
Confidence 4455677889999999999999997643211110 00 12222 23444434457899999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcE-------EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC---CceEEE
Q 012410 271 QFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR---GELVTS 338 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~---Ge~l~t 338 (464)
+..+.||+++.|++|.+||+..... ...+.+|...|..|+|.| +.++|+|.+ |+.+.|||.+ -++.++
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 8889999999999999999987543 457899999999999996 567888888 9999999984 345668
Q ss_pred eccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-.+|... |++++|+| ++-+||+||. |+||+|||+.+ -+|+.++.+|..
T Consensus 268 ~~ah~~~-----vn~~~fnp~~~~ilAT~S~-----------D~tV~LwDlRnL~~~lh~~e~H~d-------------- 317 (422)
T KOG0264|consen 268 VKAHSAE-----VNCVAFNPFNEFILATGSA-----------DKTVALWDLRNLNKPLHTFEGHED-------------- 317 (422)
T ss_pred ccccCCc-----eeEEEeCCCCCceEEeccC-----------CCcEEEeechhcccCceeccCCCc--------------
Confidence 8899988 89999999 5667788775 99999999976 579999999997
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|..|.|||.-. .|||++.|+.+.|||.
T Consensus 318 --------------------ev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 318 --------------------EVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred --------------------ceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 899999999775 6899999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=175.94 Aligned_cols=286 Identities=10% Similarity=0.067 Sum_probs=204.1
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCC---EEEEEEeecCCCCcccceeeEEEEEeccCCCC--Ccccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND---SLITVSVYASDNFSSLKCRSTKIEYIRRGKPD--SGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~---~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~--~~~~l~~~~ 183 (464)
.|++||...-.-..++ .+|...|.++-+=|..+ .+.+ +..| +++.+|.++.-+.. .++++++.
T Consensus 35 ~Iav~dp~k~~i~t~l-~GH~a~VnC~~~l~~s~~~a~~vs----G~sD------~~v~lW~l~~~~~~~i~~~~g~~~- 102 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTL-DGHVARVNCVHWLPTSEIVAEMVS----GDSD------GRVILWKLRDEYLIKIYTIQGHCK- 102 (764)
T ss_pred eEEEeCcccceeEEec-cCCccceEEEEEcccccccceEEE----ccCC------CcEEEEEEeehheEEEEeecCcce-
Confidence 5677775555555577 55989999999999888 4555 5555 79999999833332 12333222
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCE--eEEEEeC----------CCceeEEEEEc
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHV--QEIKIRS----------SSHVPLKILSI 247 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V--~~Vafs~----------s~d~tIklWdi 247 (464)
..+++. ..-+..+..+.|+++.+||.+.-+ |+.++. .+.+ .++++.| +++.-|+|..-
T Consensus 103 -----~~~cv~-a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 103 -----ECVCVV-ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred -----eEEEEE-eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 267775 233444444889999999997666 444443 1111 1222222 46677888877
Q ss_pred CCCcEEE--EEeeCCcceeeEEEEccCC-CeEEE-EeCCCeEEEEECCCCc---------------------EE---E--
Q 012410 248 EDGTVLK--VFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAE---------------------LM---E-- 297 (464)
Q Consensus 248 ~tG~~l~--tl~~~~~~~~~V~F~~~~~-~~lla-~s~D~tIkIWDv~tg~---------------------~l---~-- 297 (464)
.++++.+ .+++|..++++++|..+.+ +.+|+ +|.|.+||||.+.-+- ++ +
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 6666654 5668899999999998765 55666 5799999999875433 22 1
Q ss_pred -----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---CCceEE-----EeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 298 -----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVT-----SFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 298 -----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~Ge~l~-----tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
++.||.++|+++-+.|++..|+|+| |.|+-+|.- +|--+- ...|.... -+..-|+|++..|
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-----F~g~lw~~n~~~i 331 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-----FWGGLWSPNSNVI 331 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccc-----eeeEEEcCCCCEE
Confidence 3459999999999999998888999 999999985 243222 33344433 5788899999999
Q ss_pred EEEecCCCccccccCCCCeEEEEe-CCCCeEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSS-ILTGKCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWd-i~tG~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
++-+. -|-.++|- ...++|. ..+.||.. .|..
T Consensus 332 i~~g~-----------~Gg~hlWkt~d~~~w~~~~~iSGH~~----------------------------------~V~d 366 (764)
T KOG1063|consen 332 IAHGR-----------TGGFHLWKTKDKTFWTQEPVISGHVD----------------------------------GVKD 366 (764)
T ss_pred EEecc-----------cCcEEEEeccCccceeeccccccccc----------------------------------ccee
Confidence 98876 78999998 3334554 45678886 8999
Q ss_pred EEEcCCCCEEEEeeCCCcEEec
Q 012410 441 LFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 441 lafspDg~~LaSgs~DgtVrlW 462 (464)
|+++|.|..|.|.|.|+|-||.
T Consensus 367 v~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred eeecCCCCEEEEeccccceeee
Confidence 9999999999999999999985
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=163.60 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=202.2
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+.-++|...+ ..+.-||+.|.+||+ |-.| +.+-|||..|-..-..+.. |...+.++++| +||
T Consensus 16 el~~tld~~~---a~~~~Fs~~G~~lAv----Gc~n------G~vvI~D~~T~~iar~lsa----H~~pi~sl~WS-~dg 77 (405)
T KOG1273|consen 16 ELTHTLDNPL---AECCQFSRWGDYLAV----GCAN------GRVVIYDFDTFRIARMLSA----HVRPITSLCWS-RDG 77 (405)
T ss_pred hhceeccCCc---cceEEeccCcceeee----eccC------CcEEEEEccccchhhhhhc----cccceeEEEec-CCC
Confidence 3445664433 679999999999999 5555 6888999977665333332 33445599998 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe------------eCCcce-e
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY------------HLLHRN-K 264 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~------------~~~~~~-~ 264 (464)
+.|.++|.|..|++||+..|.+++.+. +..||.+.|.|-.+.+.-.--++..-.+-.|. +.+..+ .
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 999999999999999999999999887 78999999988544322111111111121221 111111 2
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeCC--------Cc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR--------GE 334 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~~--------Ge 334 (464)
.+.|.+ .|++|++|-..|-+-++|..|-+|+..++--+ ..+..+.|+-.|+.|+.-. |++||.++.+ |+
T Consensus 158 ~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 158 HGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred cccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 223544 46788888899999999999999998877555 7889999999999999988 9999999852 22
Q ss_pred e--EEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 335 L--VTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 335 ~--l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
. .+.|. ....| +.++||.||.+++.|+. ....+.||.-.+|..++.|.|..+
T Consensus 237 ~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg------- 293 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG------- 293 (405)
T ss_pred cChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-------
Confidence 2 12222 34446 57899999999998874 378999999999999999988653
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
| ..-.|.++|=...|+|- ..|+|++|.
T Consensus 294 -----------------------E---~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 -----------------------E---ELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred -----------------------h---heeecccccceeeeeec-cCCceEEEE
Confidence 1 33456888999999988 789999995
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=173.41 Aligned_cols=224 Identities=10% Similarity=0.103 Sum_probs=184.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE-EEec---CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS---DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l-~tl~---~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++|||. ..+.||-|=.|++|-+|++.++=++ ..++ +..|.+++|++ +.++.|--||+.+++.++.+.-
T Consensus 30 slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC
Confidence 899984 6667999999999999999976554 4555 56799999964 4778999999999999999886
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
....+|+++-.| .+..+++|++||.+.+.++..++... .|.-.+..+-++.|.|++..+|+|+ |+-|++||+ .|.
T Consensus 109 ~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 109 NGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred CCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 668889999887 56788889999988888988888653 4555568899999999999999999 999999999 587
Q ss_pred eEEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 335 LVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
-++... +-...-..|.||+|.|-.|+. ||||.. .|+|+.||-..|..++.+..|..
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS-----------~G~V~FWd~~~gTLiqS~~~h~a--------- 246 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDS-----------AGTVTFWDSIFGTLIQSHSCHDA--------- 246 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecCc-EEEecC-----------CceEEEEcccCcchhhhhhhhhc---------
Confidence 666111 111121335699999998865 667643 89999999999999999999986
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.+++-++++..+.+++.|+.|-.
T Consensus 247 -------------------------dVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 247 -------------------------DVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred -------------------------ceeEEEEcCCCCeEEEccCCCceEE
Confidence 9999999999999999999998743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=164.66 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=176.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCC-CCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~p-dGk 199 (464)
+.+.-.|.+.|.++...--|..|||.| -| ++|||..++..... .++.+. ++.+.+.-|+|-+| -|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcs----SD------~tVkIf~v~~n~~s--~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCS----SD------GTVKIFEVRNNGQS--KLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeec----CC------ccEEEEEEcCCCCc--eeeeEecCCCCCeeEEeecccccCc
Confidence 344556999999999999999999955 44 79999999654431 122221 12233447888644 589
Q ss_pred EEEEecCCCcEEEEeCCCCeEE----EEecCCCEeEEEEeC----------CCceeEEEEEcCCC--cEEEEE-eeCCcc
Q 012410 200 VLTYSAQDSIYKVFDLKNYTML----YSISDKHVQEIKIRS----------SSHVPLKILSIEDG--TVLKVF-YHLLHR 262 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l----~tl~~~~V~~Vafs~----------s~d~tIklWdi~tG--~~l~tl-~~~~~~ 262 (464)
+|||+|+|+.|-||.-.+|+-- ++.+...|.+|+|.| ++|++|.|++..+- -+-..+ .-|.-.
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999999888642 344567899999977 58999999988642 233322 233355
Q ss_pred eeeEEEEccC-C------------CeEEEEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCC----cEEEEEe-
Q 012410 263 NKKVDFIEQF-N------------EKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYEN----QLFLTFR- 322 (464)
Q Consensus 263 ~~~V~F~~~~-~------------~~lla~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fspdg----qllaS~s- 322 (464)
+.+|.+.|.. + .++++|+.|.+||||+..+++- -++|++|+++|+.||+.|.- .+|||+|
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 6899988753 1 2577889999999999888753 34799999999999999875 4699999
Q ss_pred CCeEEEEeCC--Cc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 323 NRTVAVWNFR--GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 323 D~TIklWd~~--Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||+|-||..+ ++ -..||..- - .+.+|.+.||+.|.+|+-++. |..|.||-
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~-f---~~~~w~vSWS~sGn~LaVs~G-----------dNkvtlwk 284 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEE-F---PDVVWRVSWSLSGNILAVSGG-----------DNKVTLWK 284 (299)
T ss_pred CCcEEEEEecCccCccccccccc-C---CcceEEEEEeccccEEEEecC-----------CcEEEEEE
Confidence 9999999874 22 22222211 1 133899999999999998775 99999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=160.96 Aligned_cols=251 Identities=14% Similarity=0.156 Sum_probs=177.6
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCC-C
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDV-N 197 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~p-d 197 (464)
..+.-+|.++|.+|.|.+-|+-+|+ ++-| ++++|||...+.-+ .. .+.+...|-+ .|.+-+| -
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAt----CSsD------q~vkI~d~~~~s~~--W~-~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMAT----CSSD------QTVKIWDSTSDSGT--WS-CTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred cccccCCcceeeeeeecccCceeee----ccCC------CcEEEEeccCCCCc--eE-EeeeEEecCCcEEEEEecCccc
Confidence 3556779999999999999999999 6667 89999997433321 11 1111222222 4555444 4
Q ss_pred CcEEEEecCCCcEEEEeCC--C----C-e--EEEEecC--CCEeEEEEeC----------CCceeEEEEEcCCCcEEE--
Q 012410 198 GKVLTYSAQDSIYKVFDLK--N----Y-T--MLYSISD--KHVQEIKIRS----------SSHVPLKILSIEDGTVLK-- 254 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~--t----g-~--~l~tl~~--~~V~~Vafs~----------s~d~tIklWdi~tG~~l~-- 254 (464)
||++|++|.|+|++||.=. + | + ...+|.+ ..|.+|.|.| +.|++|||++..+=--|.
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 9999999999999999741 1 1 1 2345654 5699999987 589999999765422222
Q ss_pred EEee-----------CCcceeeEEEEccC-CC-eEEEEeCC-----CeEEEEECCC-C-cEE--EEcccCCCceEEEEEc
Q 012410 255 VFYH-----------LLHRNKKVDFIEQF-NE-KLLVKQEN-----ENLQILDVRN-A-ELM--EVSRTEFMTPSAFIFL 312 (464)
Q Consensus 255 tl~~-----------~~~~~~~V~F~~~~-~~-~lla~s~D-----~tIkIWDv~t-g-~~l--~~l~gh~~~v~sv~Fs 312 (464)
+|.| +..+..+|.+.+-- .+ .|++|+.+ +.++||.-.. + +++ ..|.+|+..|++++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2221 22344778876532 23 44555533 4888996433 3 343 4788999999999999
Q ss_pred CC----CcEEEEEe-CCeEEEEeCCC---------------------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 313 YE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 313 pd----gqllaS~s-D~TIklWd~~G---------------------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|.+|+|.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSST 306 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEeec
Confidence 85 57899999 99 99999764 235678899876 9999999999999998
Q ss_pred ecCCCccccccCCCCeEEEEeCC---CCeEEEEEccCCC
Q 012410 367 CKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNC 402 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gh~~ 402 (464)
+. ||+||||... .-+|+..+++...
T Consensus 307 Gd-----------DG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 307 GD-----------DGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred CC-----------CceeeehhhhhhhhheeeeEEeccCC
Confidence 86 9999999632 3579988877553
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=163.14 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=189.1
Q ss_pred cchhhhccccceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCC--EEEEEEeecCCCCcc
Q 012410 80 FVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSS 157 (464)
Q Consensus 80 ~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~--~l~svSa~~sddfs~ 157 (464)
.+..+---..++..+...|-++|..+.|-+|++||+...+.+..| ..|..-|.++-|.++-. -|++ +++|
T Consensus 35 ~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS----~sdD--- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLS----GSDD--- 106 (362)
T ss_pred ccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheee----ecCC---
Confidence 333343333556666666999999999999999999999999999 77999999999999875 6777 6788
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS 236 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~ 236 (464)
+.|-+|++..=.+..+++.|.. .+..++.. |.||+-.|-+.|+++++|||-+|.--+.+. .+.-..|.|+|
T Consensus 107 ---G~i~iw~~~~W~~~~slK~H~~----~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 107 ---GHIIIWRVGSWELLKSLKAHKG----QVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred ---CcEEEEEcCCeEEeeeeccccc----ccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 8999999865555555665553 35589995 999999999999999999999998765554 33334499999
Q ss_pred CCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE
Q 012410 237 SSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 309 (464)
Q Consensus 237 s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv 309 (464)
.+| .-|-||.+++-.+...+... .+.-++-|.. ++.|++|.+|++|++||-.++.++..+.+|...|-++
T Consensus 179 ~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 179 QGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred CCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecC--CceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 766 35789999988777776643 4456666654 4899999999999999988899999999999999999
Q ss_pred EEc--CCCcEEEEEe-CCeEEEEeCC
Q 012410 310 IFL--YENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 310 ~Fs--pdgqllaS~s-D~TIklWd~~ 332 (464)
.|- |++.+|+|+| ||.|++||++
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcc
Confidence 843 8899999999 9999999984
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=168.61 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=162.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
+..+.|+=|.-|.|+|||+. ..|+.++.... .+++ ..-+.+.++++|...=+.++|+|.--+.|
T Consensus 164 ~~~~~aswse~G~V~Vw~l~--~~l~~l~~~~~-~~~~-------------s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLA--PHLNALSEPGL-EVKD-------------SEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred CcceeeeecccCcEEEEEch--hhhhhhcCccc-cccc-------------cccCceEEecccCccceeeeccccccccc
Confidence 66788888999999999974 45555542111 0111 12456777886655559999999656888
Q ss_pred EEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC-C---ceEEEeccCCCCcC
Q 012410 277 LVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHP 347 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~-G---e~l~tl~gH~~~~~ 347 (464)
|+|---+.|++|.+.+|.-.- -+.+|+..|..+.+|| +..+|||+| |++|+|||++ | -|+.+ +.|..-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD-- 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD-- 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc--
Confidence 988878999999999988653 4678999999999997 567899999 9999999995 7 46666 788775
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
||-|.|+.+-.+||||++ |||++|||+.+ |+.+++++-|..
T Consensus 305 ---VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~---------------------- 348 (440)
T KOG0302|consen 305 ---VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA---------------------- 348 (440)
T ss_pred ---eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC----------------------
Confidence 899999999999999987 99999999864 888999999986
Q ss_pred ccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
.|++|.|+|. ...|+.++.|..|.|||+
T Consensus 349 ------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 ------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999984 567889999999999995
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-16 Score=172.34 Aligned_cols=262 Identities=11% Similarity=0.097 Sum_probs=192.0
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC-CCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G-~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.|..--..|.|-|+|+.|.+++ -| +.|++|+...- +--.+....+ + -+-+++- ++..|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcg----sd------g~ir~~~~~sd~e~P~ti~~~g-~---~v~~ia~---~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCG----SD------GDIRKWKTNSDEEEPETIDISG-E---LVSSIAC---YSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEec----CC------CceEEeecCCcccCCchhhccC-c---eeEEEee---cccceEEee
Confidence 3666678899999999888843 34 57888875322 1101111111 1 1113333 455888999
Q ss_pred CCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
.|+||.++...+++.--.|. +-.++.++|+. ++|..||+.+..++...++|++|..+|..|.|.|. ++.
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~-~~f 152 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK-GNF 152 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-CCE
Confidence 99999999988776421111 34578888864 58899999999999999999988899999999995 456
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCC--------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEF--------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~--------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
|++.+-||+|+|||+++|.|.+++.+-. ..+.-++|+|+|-.||... |++|++++. .++....|.+...-
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence 6667899999999999999998876631 2345678999966666666 999999998 68888888865543
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+..+.|||.|+|||++.. ||.|-|||+.| ..-|.
T Consensus 233 ---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t------~~~~~------------------------ 268 (933)
T KOG1274|consen 233 ---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT------HERHE------------------------ 268 (933)
T ss_pred ---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc------chhcc------------------------
Confidence 12678999999999999988 99999999987 11132
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
..+.|.+++|-|+++-|----.-|+
T Consensus 269 --------~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 269 --------FKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred --------ccceeEEEecCCCCCeeEEEeeccc
Confidence 1237889999999886654433333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=176.41 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=189.6
Q ss_pred cceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 98 RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
..+|+...++|-+.+||+..-+ .+..+ ..|...|..+.+-| |+.+.+ + ++.| +|+++||++++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wap-ge~~lV-s--asGD------sT~r~Wdvk~s 132 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAP-GESLLV-S--ASGD------STIRPWDVKTS 132 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCC-CceeEE-E--ccCC------ceeeeeeeccc
Confidence 3688889999999999865433 24566 67999999999999 766554 2 3345 89999999999
Q ss_pred CCCCc--ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEecCCCEeEE---EEeCC--CceeEE
Q 012410 172 KPDSG--FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEI---KIRSS--SHVPLK 243 (464)
Q Consensus 172 ~~~~~--~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~~~~V~~V---afs~s--~d~tIk 243 (464)
++.++ +.+|+ +.+-+++|.+-|--++++|+.|+.|+|||+. ++.-....-+..+..- +-.|+ .-.-++
T Consensus 133 ~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 133 RLVGGRLNLGHT----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eeecceeecccc----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 99887 33333 3333899987777889999999999999986 2210000001000000 00011 001122
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEE------E--cccC---CCceEEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME------V--SRTE---FMTPSAFIF 311 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~------~--l~gh---~~~v~sv~F 311 (464)
=|-...+. +. ..|..|.| - |+..|+++| .|++||+||++...+.- . +..| +..+..++.
T Consensus 209 k~kA~s~t----i~---ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 209 KWKAASNT----IF---SSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred ccccccCc----ee---eeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 22222221 11 12344555 2 456677766 59999999999876542 2 2223 223445544
Q ss_pred cCCCcEEEEEe-CCeEEEEeCCCc---eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~Ge---~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
---|.+|...+ |++|-.||+.+. .+..+.||..--- .| .-..|||+.+|+||+. |.-+.+|.
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf--~v-ks~lSpd~~~l~SgSs-----------d~~ayiw~ 345 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF--YV-KSELSPDDCSLLSGSS-----------DEQAYIWV 345 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCccccee--ee-eeecCCCCceEeccCC-----------Ccceeeee
Confidence 44455554444 999999998433 5667777765311 12 2346999999999986 99999999
Q ss_pred CCCCe-EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC--CCCEEEEeeCCCcEEeccC
Q 012410 388 ILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 388 i~tG~-cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp--Dg~~LaSgs~DgtVrlWd~ 464 (464)
+.+-+ -...+.||+- .|++|.+.| ++. +|++|+|-++++|+.
T Consensus 346 vs~~e~~~~~l~Ght~----------------------------------eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTR----------------------------------EVTTVRWLPSATTP-VATCSDDFRVKIWRL 390 (720)
T ss_pred ecCccCChhhhhCcce----------------------------------EEEEEeeccccCCC-ceeeccCcceEEEec
Confidence 87643 3567778875 789988865 555 455599999999974
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=157.58 Aligned_cols=231 Identities=12% Similarity=0.167 Sum_probs=175.3
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+.+|.|+ |.+..|+-+|+|++++|+|+..-+++..+. +..+.+.+|-+ +-|+.|+..|+.+|+..+..+|.
T Consensus 16 IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 16 ISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred eeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC
Confidence 3389998 677777778899999999998877766665 67899999954 58899999999999988877765
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELV 336 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l 336 (464)
..+.+|.+++ ..+.+++||.|++||+||.++..+..++... ..|.+. +--|..|+.|. |+.|-+||++ .+..
T Consensus 95 -~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 95 -EGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred -CceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccC-ceEEEE--eccCCEEEEeecCceEEEEEcccccchh
Confidence 7889999987 3578999999999999999986555555433 245544 44566667766 9999999983 4444
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEEccCCCCCCcccccCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKINATNCSPKVDDELGS 412 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~gh~~~~~~~~~~~~ 412 (464)
+.-+--... + +++|++-|++.=.|++|- ||.|-+=.+.+.+| -..|+.|...-+..
T Consensus 170 q~reS~lky-q---tR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----- 229 (323)
T KOG1036|consen 170 QRRESSLKY-Q---TRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----- 229 (323)
T ss_pred hhcccccee-E---EEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeecccCCc-----
Confidence 322222222 2 899999999888888887 89888877666633 34677886411111
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+-.-+|.+++|+|=-+++|||+.||.|-+||.
T Consensus 230 --------------------~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 230 --------------------EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred --------------------eEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 11228999999999999999999999999984
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=159.71 Aligned_cols=270 Identities=10% Similarity=0.140 Sum_probs=201.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--ccc-eeec-cccCce------E-----EE
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FAL-FESE-SLKWPG------F-----VE 192 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~l-~~~~-~~~~~~------~-----Va 192 (464)
+.+...+.-+||||.-|.+-| .| ....+|.++.--.... .++ +... .+..+. . ..
T Consensus 48 p~nf~kgckWSPDGSciL~~s----ed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLS----ED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred chhhhccceeCCCCceEEeec----cc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc
Confidence 334456678999999888733 44 5777888743222111 111 1100 111111 1 22
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----C---CEeEEEEeCCC-------ceeEEEEEc-CCCcEE---E
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---HVQEIKIRSSS-------HVPLKILSI-EDGTVL---K 254 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----~---~V~~Vafs~s~-------d~tIklWdi-~tG~~l---~ 254 (464)
-..|+-.+.|+++.|.-|++||.-||++..+.+. + .-.+++|+|+. -.+||++|+ ..|.-- .
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchh
Confidence 2358888999999999999999999999877762 1 35689999963 358999999 556422 2
Q ss_pred EEee----CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEE
Q 012410 255 VFYH----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAV 328 (464)
Q Consensus 255 tl~~----~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIkl 328 (464)
|+.+ ...-+..++|+|-+...+++++...++=|+.-..+..+.++-||...|+-+.|.+||+.|.||+ |-.|-.
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 3322 2345588999997666777799999999999888999999999999999999999999999998 999999
Q ss_pred EeCC--CceEEEeccCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCC
Q 012410 329 WNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCS 403 (464)
Q Consensus 329 Wd~~--Ge~l~tl~gH~~~~~~~~v~svaf--SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~ 403 (464)
||++ ++.|..|++|..- .| .-|.| -|+|++||||+. ||.|++||+.+ |.-+..+..|+.
T Consensus 278 WDiR~~~~pv~~L~rhv~~---TN-QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~sd- 341 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGD---TN-QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYSD- 341 (406)
T ss_pred EeehhccchhhhhhhhccC---cc-ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccccc-
Confidence 9993 9999999999652 11 23555 689999999986 99999999988 887777777775
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
-|..|+++|-=+++|++|-.
T Consensus 342 ---------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 ---------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---------------------------------cccceecCcccceeeeccCc
Confidence 78889999998888888753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=156.00 Aligned_cols=288 Identities=16% Similarity=0.172 Sum_probs=186.8
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccce-eeEEEEEeccCCCC------CcccceeeccccC
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKC-RSTKIEYIRRGKPD------SGFALFESESLKW 187 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~-~ti~l~~i~~G~~~------~~~~l~~~~~~~~ 187 (464)
+.+..++..=+.|..-||.++-+|..+ +|++ .| .+++++++ ..+-||.|+.-.-. .....+..+.++-
T Consensus 50 e~s~l~skvf~h~agEvw~las~P~d~~ilaT--~y--n~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~ 125 (370)
T KOG1007|consen 50 EGSELLSKVFFHHAGEVWDLASSPFDQRILAT--VY--NDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGK 125 (370)
T ss_pred ccchhhhhhhhcCCcceehhhcCCCCCceEEE--EE--eccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCc
Confidence 566666655477888899999999765 4555 33 34556655 56778998432211 1112222345566
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+..|+|- ||++.||+=. |..|-||++..+.. .|.+|+.+.+..++ +.-.+=+
T Consensus 126 i~cvew~-Pns~klasm~-dn~i~l~~l~ess~-------~vaev~ss~s~e~~-------------------~~ftsg~ 177 (370)
T KOG1007|consen 126 INCVEWE-PNSDKLASMD-DNNIVLWSLDESSK-------IVAEVLSSESAEMR-------------------HSFTSGA 177 (370)
T ss_pred eeeEEEc-CCCCeeEEec-cCceEEEEcccCcc-------hheeeccccccccc-------------------ceecccc
Confidence 6799995 8999999765 88999999987653 24555555442211 2223345
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcE-EEEEe-CCeEEEEeC--CCceEEEeccC
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNF--RGELVTSFEDH 342 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~Fspdgql-laS~s-D~TIklWd~--~Ge~l~tl~gH 342 (464)
++|..++..++.-.|+|++-||++|-.+... -..|.+.|+.+.|+|+.|. |||++ |+-|||||. +-..+++|.+|
T Consensus 178 WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 178 WSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred cCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 6675566667767789999999999877654 4578889999999999996 55566 999999998 37799999999
Q ss_pred CCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCcccc
Q 012410 343 LLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 343 ~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
..| ||+|-|.|- .++|.||+. |..|.||...+--.-..+. +|..+-.+...+.-. +
T Consensus 258 sHW-----vW~VRfn~~hdqLiLs~~S-----------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer-~----- 315 (370)
T KOG1007|consen 258 SHW-----VWAVRFNPEHDQLILSGGS-----------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER-V----- 315 (370)
T ss_pred ceE-----EEEEEecCccceEEEecCC-----------CceeEEEeccccccccccccccccccCcchhhHHh-c-----
Confidence 999 999999995 567777764 9999999753311111111 121100000000000 0
Q ss_pred ccccccccc----cccccccCEEEEEEcCCCC-EEEEeeCCCcEEe
Q 012410 421 LNKSSYIRS----TVGEALEDITSLFYDEERN-EIYTGNRHGLVHV 461 (464)
Q Consensus 421 ~~~~~~~~~----~~~~~l~~V~slafspDg~-~LaSgs~DgtVrl 461 (464)
. -+.. +-.+.=..|.+++||.-.. +.||=|-||-|-|
T Consensus 316 ---k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 316 ---K-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ---c-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 0 0000 1112233899999986554 6788899997744
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=164.59 Aligned_cols=282 Identities=14% Similarity=0.147 Sum_probs=199.6
Q ss_pred cCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCC-CCcccceeeccccCceEEEEeCCCCcEEEE
Q 012410 126 VSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
..+...|.+++|.|--. .|+.|+ .- +++|-+|++.+.+. ..++.+|+. +-+.+..+.|++.|-..+.|
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~G---dK------~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVG---DK------GGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecccCcceEEEEc---cC------CCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheee
Confidence 45778899999999755 454433 22 37999999964444 335666663 44456789999777778888
Q ss_pred ecCCCcEEEEeCCCCeE--EEEecC--CCEeEEEEeCC--------CceeEEEEEcCCCcE-EEEEeeCCcceeeEEEEc
Q 012410 204 SAQDSIYKVFDLKNYTM--LYSISD--KHVQEIKIRSS--------SHVPLKILSIEDGTV-LKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~--l~tl~~--~~V~~Vafs~s--------~d~tIklWdi~tG~~-l~tl~~~~~~~~~V~F~~ 270 (464)
+|.|||||+=|++++.. ++++.+ .+..+..|+.+ .-+-.-+||..++.- ..-+.-|...|.+|++.|
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999998764 456643 34556666542 334678899886544 444443335889999999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEE----EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--C--ceEEEecc
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELM----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--ELVTSFED 341 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l----~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--G--e~l~tl~g 341 (464)
.....||++|.|+|.||||+++-.-. -....|...|.|+-|||.|-.|+|.+ |.+|+|||.. + -+....--
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 88888888999999999999884322 23346888999999999999999999 9999999972 1 12222222
Q ss_pred CCC----CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 342 HLL----WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 342 H~~----~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
|.+ |.. ..-.+|.||-.+|++|-. -.-|-|.|-..||.+..|.+-..
T Consensus 413 Hn~~t~RwlT---~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~--------------- 463 (498)
T KOG4328|consen 413 HNNRTGRWLT---PFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES--------------- 463 (498)
T ss_pred ccCccccccc---chhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc---------------
Confidence 333 321 345789999999999977 34599999877886766633221
Q ss_pred cccccccccccccccccccCEEE-EEEcCCCCEEEEe-eCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTG-NRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~s-lafspDg~~LaSg-s~DgtVrlWd~ 464 (464)
..|.+ ..|+|-+..|++| +.-|.|.||-+
T Consensus 464 ------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 ------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ------------------cccccceeecccccceeccCCccceEEEEec
Confidence 02333 5899999955554 57899999964
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-15 Score=155.71 Aligned_cols=300 Identities=14% Similarity=0.153 Sum_probs=219.6
Q ss_pred ceEEEEec----cceeehhccCC--eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA----RDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a----g~~l~~l~~~g--~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti 163 (464)
.|.-+.|+ |++|.+.+.+. +..+||-..+..+-.+ ...+|.|--..|.|-+.-|+. .++. ..+
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-k~sne~v~~a~FHPtd~nlii--t~Gk--------~H~ 224 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-KTSNEVVFLATFHPTDPNLII--TCGK--------GHL 224 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-eeccceEEEEEeccCCCcEEE--EeCC--------ceE
Confidence 34444444 77777766554 7888886777777777 446788999999999888888 4443 468
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE-------
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI------- 234 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf------- 234 (464)
..|+.+.|-+...+.+|+...-+++-+|+|. +||++++ |..+++|-||+..+.+..+..+ ++.|.++..
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdviT-gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVIT-GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEEe-ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe
Confidence 8999999988887778875434777899997 8998875 8999999999987777665544 677888776
Q ss_pred eCCCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 235 RSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
|...|..|-+|| .+=+.++..+ ..-+.++.|+ |..++ |++|-.-++|--=.++++--+ +..||.+..|.++-.
T Consensus 303 SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~h 377 (626)
T KOG2106|consen 303 SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATH 377 (626)
T ss_pred ecCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcC
Confidence 456889999999 3333333222 2235566666 43334 777654455544344444433 446788999999999
Q ss_pred CCCcEEEEEe-CCeEEEEeCCCceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 313 YENQLFLTFR-NRTVAVWNFRGELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 313 pdgqllaS~s-D~TIklWd~~Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|+..+|+|++ |++++||| .-+++ +.+++- +.++.|.|-| .||-|.. .|---+-|++
T Consensus 378 ps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~--------~~~~~fhpsg-~va~Gt~-----------~G~w~V~d~e 436 (626)
T KOG2106|consen 378 PSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDP--------AECADFHPSG-VVAVGTA-----------TGRWFVLDTE 436 (626)
T ss_pred CChhheeeccCcceEEEcc-CCceeEEEEecCc--------eeEeeccCcc-eEEEeec-----------cceEEEEecc
Confidence 9999999999 99999999 43332 223222 5689999999 8898886 7888888998
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|...+ +++-.+. +++.|+|||||..||-||.|+.|.|+.
T Consensus 437 ~~~lv-~~~~d~~----------------------------------~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 437 TQDLV-TIHTDNE----------------------------------QLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred cceeE-EEEecCC----------------------------------ceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 84443 3433332 899999999999999999999999863
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=157.89 Aligned_cols=191 Identities=10% Similarity=0.132 Sum_probs=149.3
Q ss_pred eCCCceeEEEEEcCCCc-------EEEEEe-----e---CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc
Q 012410 235 RSSSHVPLKILSIEDGT-------VLKVFY-----H---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 299 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~-------~l~tl~-----~---~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l 299 (464)
|...|+.|-+||+++-. ..+... | |--.+.++.|-|.+.|.+.++|.|+|+|+||..|-|..-++
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 44688899999998644 223222 1 22234788888988898888999999999999999888777
Q ss_pred ccCCCceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCcc
Q 012410 300 RTEFMTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPED 373 (464)
Q Consensus 300 ~gh~~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~ 373 (464)
+=+ +.|++-+.||=.- ++|+|- |-.|+|.|+ .|.|-++|.||..- |-+|.+||-..+ ||+||.
T Consensus 141 ~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~-----vlaV~Wsp~~e~vLatgsa----- 209 (397)
T KOG4283|consen 141 KME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG-----VLAVEWSPSSEWVLATGSA----- 209 (397)
T ss_pred ecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc-----eEEEEeccCceeEEEecCC-----
Confidence 654 4677777777543 677777 889999999 79999999999987 899999998776 466654
Q ss_pred ccccCCCCeEEEEeCCCC-eEEEEEccCCC--CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 374 QWMEGSAGSINVSSILTG-KCLAKINATNC--SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG-~cl~tl~gh~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
||+||+|||.-- -|+++|.-|+. +|... +-...-..|.++||+.||..|
T Consensus 210 ------Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~----------------------~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 210 ------DGAIRLWDIRRASGCFRVLDQHNTKRPPILK----------------------TNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred ------CceEEEEEeecccceeEEeecccCccCcccc----------------------ccccccceeeeeeecccchhh
Confidence 999999999876 89999999984 11111 111222389999999999999
Q ss_pred EEeeCCCcEEeccC
Q 012410 451 YTGNRHGLVHVWSN 464 (464)
Q Consensus 451 aSgs~DgtVrlWd~ 464 (464)
++.+.|..+|+|+.
T Consensus 262 ~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNM 275 (397)
T ss_pred hhccCccceEEeec
Confidence 99999999999974
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=180.85 Aligned_cols=179 Identities=13% Similarity=0.202 Sum_probs=150.0
Q ss_pred CCceeEEEEEcCC---CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 237 SSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 237 s~d~tIklWdi~t---G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
+.-+.|-+||+.- .+.+..|+.|...+.+++|++.....|++||.|++||+||++...-..++.+....|+.|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 4556789999976 5666778877678899999997677888899999999999999999999999999999999996
Q ss_pred -CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 -ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 -dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
++..|+++. .|++++||++ -+|...|..|... |..+-++|++.+||+|+. |++|||||..
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR-----------DK~vkiWd~t 250 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR-----------DKMVKIWDMT 250 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC-----------CccEEEEecc
Confidence 678899999 9999999994 8899999999998 788889999999999986 9999999986
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEee--CCCcEEeccC
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN--RHGLVHVWSN 464 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs--~DgtVrlWd~ 464 (464)
+++.-..+.-|+. ..|..|.|-|+.+ .|||.| .|-.|+|||.
T Consensus 251 ~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 251 DSRAKPKHTINTI---------------------------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred CCCccceeEEeec---------------------------------ceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 5543222222221 2788999999987 477776 5888999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=164.15 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=158.2
Q ss_pred CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC----------------cccceeeccccCce---EEEEeCCCCcE
Q 012410 140 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS----------------GFALFESESLKWPG---FVEFDDVNGKV 200 (464)
Q Consensus 140 ~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~----------------~~~l~~~~~~~~~~---~VaFs~pdGk~ 200 (464)
-|+++|+ |..+ ..|.|||+.--.... +.+.+. ..+|.. +++++--.-.+
T Consensus 191 ~gNyvAi----Gtmd------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~--~~gHTdavl~Ls~n~~~~nV 258 (463)
T KOG0270|consen 191 AGNYVAI----GTMD------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNS--ASGHTDAVLALSWNRNFRNV 258 (463)
T ss_pred CcceEEE----eccC------ceeEEeccccccccccceeechhhhhhhhhhcccccc--cccchHHHHHHHhcccccee
Confidence 3667877 7777 899999873222110 001111 124553 45554334468
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEE-EEEeeCCcceeeEEE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDF 268 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l-~tl~~~~~~~~~V~F 268 (464)
|||||.|+|||||||.+|+|-.++. ++.|++++|.| +.|++|+|-|...-.+. +.++. ...+-+|++
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w 337 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAW 337 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEe
Confidence 9999999999999999999999887 67899999966 58999999998731111 22221 256788999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCCCceEEEeccCCCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFRGELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~ 345 (464)
.|.....++++..||+++=.|+|+ |+++-+++.|...|..+.+++.. .+++|++ |++||||++.+.--+.-..|..-
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 886556677788999999999998 59999999999999999988654 4677788 99999999853332222334332
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
... ..+.++-|+-..+.+.+ |..+-++|||+.++.-+
T Consensus 418 ~~r--l~c~~~~~~~a~~la~G----------G~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGR--LHCFALDPDVAFTLAFG----------GEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccc--eeecccCCCcceEEEec----------CccceEEEeecccChhH
Confidence 110 23445556544443332 23678999999776543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-16 Score=162.55 Aligned_cols=206 Identities=13% Similarity=0.057 Sum_probs=136.1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEecCCCEeEEEEeCC
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISDKHVQEIKIRSS 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~~~~V~~Vafs~s 237 (464)
..+.|||...+.. . .+.. +.....+++|| |||+.||+.+.+. +|.+||+.+|+..
T Consensus 184 ~~i~i~d~dg~~~-~--~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------- 241 (429)
T PRK01742 184 YEVRVADYDGFNQ-F--IVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARK---------------- 241 (429)
T ss_pred EEEEEECCCCCCc-e--Eecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceE----------------
Confidence 6888888643332 1 1222 11233479997 8999999987542 4556665544321
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
++..+. ..+..++|+| ++.+|+.++ .|+.++|| |+.++++.+ +.+|...+.+..|+||
T Consensus 242 --------------~l~~~~---g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 242 --------------VVASFR---GHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPD 302 (429)
T ss_pred --------------EEecCC---CccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCC
Confidence 122222 1234678888 466677654 68876665 777777654 4556666788999999
Q ss_pred CcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 315 NQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 315 gqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|+.|+..+ ++.++||++ .|.....+ +|... +..|||||++|+..+. ++.+ +||+.+
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~-------~~~~SpDG~~ia~~~~-----------~~i~-~~Dl~~ 362 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGY-------SAQISADGKTLVMING-----------DNVV-KQDLTS 362 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCC-------CccCCCCCCEEEEEcC-----------CCEE-EEECCC
Confidence 99877655 789999987 34444444 44321 3679999999998764 5544 599999
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++.....++ ...+++|+|||+.|+.++.++.+++|+
T Consensus 363 g~~~~lt~~~------------------------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 363 GSTEVLSSTF------------------------------------LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCeEEecCCC------------------------------------CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 9875432222 224578999999999999999998885
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=159.60 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=171.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-------CeEE-E----Eec---CCCEeEEEE---------------eCCCc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTML-Y----SIS---DKHVQEIKI---------------RSSSH 239 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-------g~~l-~----tl~---~~~V~~Vaf---------------s~s~d 239 (464)
...+| |||..|.+-+.|.++.+|+|.. ...+ . +++ ...|.+-.+ ..+.|
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 56676 9999999999999999999752 1111 1 111 344554444 12588
Q ss_pred eeEEEEEcCCCcEEEEEe--eCCcce---eeEEEEccCCCeEEEEeCCCeEEEEEC-CCCcEEE---Ec-c---cCCCce
Q 012410 240 VPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELME---VS-R---TEFMTP 306 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~--~~~~~~---~~V~F~~~~~~~lla~s~D~tIkIWDv-~tg~~l~---~l-~---gh~~~v 306 (464)
.||+|||.-||+.-.++. .|..++ .+++|+|+ +++ |.++...+||++|+ +.|.--. ++ . |...-+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-Geq-lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCe-EeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999999988876 333444 89999994 555 55567899999999 7776322 21 1 124567
Q ss_pred EEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 307 SAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 307 ~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
..++|+|-. .++|.++ -+++-|++- .++.+++|-||.+- |.-+.|.|||..|.||+.. |-.|
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk----------~dkI 275 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK----------DDKI 275 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------CCeE
Confidence 789999855 4999999 999999998 58899999999998 8899999999999999873 7889
Q ss_pred EEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 384 NVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 384 klWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
-.|||.. ++-+..|..|.. + .=+.|. ....|+|+.||||+.||.|++|
T Consensus 276 l~WDiR~~~~pv~~L~rhv~-----------~-------------------TNQRI~-FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVG-----------D-------------------TNQRIL-FDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred EEEeehhccchhhhhhhhcc-----------C-------------------ccceEE-EecCCCCceeeccCCCccEEEE
Confidence 9999964 667888888864 0 001332 4557999999999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|+
T Consensus 325 dl 326 (406)
T KOG2919|consen 325 DL 326 (406)
T ss_pred ec
Confidence 96
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=159.69 Aligned_cols=247 Identities=14% Similarity=0.193 Sum_probs=158.3
Q ss_pred EEEEeccceeehhccCC-----eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 92 IEIVAARDIVFALAHSG-----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g-----~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..++|...+.++....+ .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|. .+.+ ..+.++
T Consensus 158 ~~g~f~~riayv~~~~~~~~~~~l~~~d-~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~-~~g~------~~i~i~ 228 (429)
T PRK03629 158 IKGAFRTRIAYVVQTNGGQFPYELRVSD-YDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTF-ESGR------SALVIQ 228 (429)
T ss_pred CCCccCCeEEEEEeeCCCCcceeEEEEc-CCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEe-cCCC------cEEEEE
Confidence 35666677766665332 577777 45665666634 5667999999999999998762 2233 578999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .+.. .-++...++|| |||+.|+..+. ++. ..|.+|
T Consensus 229 dl~~G~~~---~l~~--~~~~~~~~~~S-PDG~~La~~~~~~g~------------------------------~~I~~~ 272 (429)
T PRK03629 229 TLANGAVR---QVAS--FPRHNGAPAFS-PDGSKLAFALSKTGS------------------------------LNLYVM 272 (429)
T ss_pred ECCCCCeE---EccC--CCCCcCCeEEC-CCCCEEEEEEcCCCC------------------------------cEEEEE
Confidence 99888752 1222 12344578997 89999986532 221 123444
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
|+++|++.+...+. ..+..+.|+| ++.+|+..+ .++..+|| |+.+|+..+. ..+........|||||+.|+..+
T Consensus 273 d~~tg~~~~lt~~~-~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 273 DLASGQIRQVTDGR-SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred ECCCCCEEEccCCC-CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEE
Confidence 45444443322221 2346678888 456676666 34555555 7777776543 22333455788999999998765
Q ss_pred -C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 323 -N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 323 -D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
+ ..|.+||+ +|+ ++.|.... . ..+..|||||+.|+..+.. +....+.++++ +|+..+.|
T Consensus 350 ~~~g~~~I~~~dl~~g~-~~~Lt~~~-~-----~~~p~~SpDG~~i~~~s~~--------~~~~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 350 SNGGQQHIAKQDLATGG-VQVLTDTF-L-----DETPSIAPNGTMVIYSSSQ--------GMGSVLNLVST-DGRFKARL 413 (429)
T ss_pred ccCCCceEEEEECCCCC-eEEeCCCC-C-----CCCceECCCCCEEEEEEcC--------CCceEEEEEEC-CCCCeEEC
Confidence 3 35888999 465 44555321 1 3467899999999998751 11234788887 89989999
Q ss_pred ccCCC
Q 012410 398 NATNC 402 (464)
Q Consensus 398 ~gh~~ 402 (464)
.+|..
T Consensus 414 ~~~~~ 418 (429)
T PRK03629 414 PATDG 418 (429)
T ss_pred ccCCC
Confidence 88875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=160.76 Aligned_cols=220 Identities=11% Similarity=0.167 Sum_probs=160.9
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEE---EEe--------------------c---------CCCEeEEEEeCCCceeEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTML---YSI--------------------S---------DKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l---~tl--------------------~---------~~~V~~Vafs~s~d~tIkl 244 (464)
-|.++|-|..|.+|.||||.=-..+ .+| + ......|-+|.+.|+||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4679999999999999997521111 111 1 1224566678899999999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE-EEEEe-
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR- 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql-laS~s- 322 (464)
||+.+|+|-.++.||...|.+++|.|..+..||+|+.|++++|.|.+.-.+...----...|..+++.|.... +.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999999999999988999999999987889999999999999999842221100001235777888776654 44455
Q ss_pred CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
||+|+=.|.+ |+++.++..|... |..|.+++.-. +|+++|. |++||||++.--+ -+....
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s~-----------d~~Vklw~~~~~~-~~~v~~ 413 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAST-----------DKVVKLWKFDVDS-PKSVKE 413 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeeccc-----------cceEEEEeecCCC-Cccccc
Confidence 9999999994 9999999999998 77888887654 5566554 9999999974221 111122
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
|. ..|....+.++.|+-- +||.|+..+.+||||+
T Consensus 414 ~~-------------------------------~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 414 HS-------------------------------FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cc-------------------------------ccccceeecccCCCcceEEEecCccceEEEeec
Confidence 22 1122566778888765 6888999999999985
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=166.75 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=143.6
Q ss_pred eCCCceeEEEEEcCC--------CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC------C----cEE
Q 012410 235 RSSSHVPLKILSIED--------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------A----ELM 296 (464)
Q Consensus 235 s~s~d~tIklWdi~t--------G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t------g----~~l 296 (464)
+.+.|++||+|+++. =+.+.||..|-.+|-+|+..+ .++.+.+|+.|++|+.|++-. + .+.
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~ 389 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLS 389 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhc
Confidence 446889999999832 346778888889999999866 578999999999999994432 1 255
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEecc----------------------------------
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED---------------------------------- 341 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~g---------------------------------- 341 (464)
.++.||++.||.+++|+..+.|++.| |+|+++|+.+++..-+|..
T Consensus 390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ 469 (577)
T KOG0642|consen 390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDM 469 (577)
T ss_pred cceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhh
Confidence 68899999999999999999999999 9999999975332222221
Q ss_pred -----------CCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 342 -----------HLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 342 -----------H~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
-.. ....+.++-|...|.+.+.+++- +|++||+.|..+|+.+....+|-.
T Consensus 470 ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h-----------ed~~Ir~~dn~~~~~l~s~~a~~~------ 532 (577)
T KOG0642|consen 470 EVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH-----------EDRSIRFFDNKTGKILHSMVAHKD------ 532 (577)
T ss_pred hhhhheeeccccCCCcccccCccceEEecCCCCeeEecc-----------cCCceecccccccccchheeeccc------
Confidence 000 00011245566677777776665 499999999999999998888875
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++|+.|+|-+|+||+.|+.|+||.+
T Consensus 533 ----------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 533 ----------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ----------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 8999999999999999999999999975
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=162.61 Aligned_cols=249 Identities=13% Similarity=0.168 Sum_probs=185.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EE--EEecCC---CEeEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---ML--YSISDK---HVQEI 232 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l--~tl~~~---~V~~V 232 (464)
.+++|||...-.....+-.++.++ -..++.++.-|--+.|+.+.|+.|++|. +.|+ -- ..+... -|..+
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CceEEeecccccCccccccCCCCC--cceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhh
Confidence 379999986544433333333221 1226777644445778889999999997 5555 11 111111 13333
Q ss_pred EE-----eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCce
Q 012410 233 KI-----RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTP 306 (464)
Q Consensus 233 af-----s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v 306 (464)
.+ +....++|||||+..--|.+.|.+|...|..|.+.- .+++|++.+..|-|-|-.+.|++.-.++..- .+.|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 33 335678999999997778888998888999999977 3689999999999999999999987777654 4566
Q ss_pred EEEEEcCCCcEEEE-Ee-CCeEEEEeCCCc--eEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCC
Q 012410 307 SAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 307 ~sv~FspdgqllaS-~s-D~TIklWd~~Ge--~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+-+.|||-.+.+++ ++ ||+|.|||++|. ...-++.|..+ ...|+|||- ..+|||-+. |+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~-----------Dk 231 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY-----------DK 231 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc-----------cc
Confidence 78889998886655 66 999999999766 44567789887 568999995 567888877 99
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.++|+...+....|.... +..+|+|+|+|.+|+.|+..|.|-.
T Consensus 232 ki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred eEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCCceEEE
Confidence 99999998776666663322 7889999999999999999999988
Q ss_pred ccC
Q 012410 462 WSN 464 (464)
Q Consensus 462 Wd~ 464 (464)
+|+
T Consensus 277 YD~ 279 (673)
T KOG4378|consen 277 YDM 279 (673)
T ss_pred Eec
Confidence 874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=166.43 Aligned_cols=219 Identities=14% Similarity=0.205 Sum_probs=177.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------------------------------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS------------------------------- 237 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s------------------------------- 237 (464)
++.-+ |-|..|||||.|||+|||.+.||.|++++. +..|++|+|+|.
T Consensus 405 ~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 405 SISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred EEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence 67775 799999999999999999999999999888 789999999763
Q ss_pred -----------CceeEEEEEcC------CCcEEEEEeeCCcceeeEEEEccCCCeEEEE---eCCCeEEEEECCCCcEEE
Q 012410 238 -----------SHVPLKILSIE------DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRNAELME 297 (464)
Q Consensus 238 -----------~d~tIklWdi~------tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~---s~D~tIkIWDv~tg~~l~ 297 (464)
.+..+-.|.-. -|-|+ ++.| -..+++|.+.. .|.+|++- +....|-|.++..+.-..
T Consensus 484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~-~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~ 560 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKH-PKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQS 560 (733)
T ss_pred hhhhcCCCccCCcccceeechhhhhhhccceEE-EEec-CCccceeeeec-CCceEEEeccCCCcceEEEEecccccccC
Confidence 22345567543 12122 2333 26778899887 46777763 366778888887766555
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 298 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 298 ~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
-|+--...|-.+.|.|-..+|..+.-+.|+|+|+ .+++++.|.--.-| |.+++++|.|+-|+.|+.
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~-------- 627 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY-------- 627 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC--------
Confidence 5544445688999999999999999899999999 79999988888888 889999999999999987
Q ss_pred cCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 377 EGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 377 ~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|+.+-..|+.- -+-.++|+-|.. .|++|+|++-=..+||||.
T Consensus 628 ---d~k~~WfDldlsskPyk~lr~H~~----------------------------------avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 628 ---DKKMCWFDLDLSSKPYKTLRLHEK----------------------------------AVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred ---CCeeEEEEcccCcchhHHhhhhhh----------------------------------hhhhhhhccccceeeeecC
Confidence 99998888754 367788888886 8999999999999999999
Q ss_pred CCcEEec
Q 012410 456 HGLVHVW 462 (464)
Q Consensus 456 DgtVrlW 462 (464)
||+|.|.
T Consensus 671 Dgtv~Vf 677 (733)
T KOG0650|consen 671 DGTVIVF 677 (733)
T ss_pred CCcEEEE
Confidence 9999886
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=151.69 Aligned_cols=220 Identities=13% Similarity=0.186 Sum_probs=164.1
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEe---eCCccee
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFY---HLLHRNK 264 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~---~~~~~~~ 264 (464)
-+||.|+.-|.|||-|+.+++|...+. +..|.+|+|.| +.|.+||||||+++.|+..|- +|-.+|-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 478999999999999999999986654 67899999965 689999999999999999986 5667889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE---E---cccC-CC--ceEEEEEcCC-----------------CcEE
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELME---V---SRTE-FM--TPSAFIFLYE-----------------NQLF 318 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~---~---l~gh-~~--~v~sv~Fspd-----------------gqll 318 (464)
+|+|+. ++++|++++.|.+|++|++...+-.+ . +... ++ .|+-..--|+ |.++
T Consensus 186 SvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i 264 (385)
T KOG1034|consen 186 SVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI 264 (385)
T ss_pred EEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence 999999 57899999999999999998654221 1 1100 01 0111111122 7889
Q ss_pred EEEe-CCeEEEEeC-C----------CceEEEeccCCCCcCCCCeeEEEECC--CCCEEEEEecCCCccccccCCCCeEE
Q 012410 319 LTFR-NRTVAVWNF-R----------GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 319 aS~s-D~TIklWd~-~----------Ge~l~tl~gH~~~~~~~~v~svafSp--Dg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
+|=| ++.|-.|-. . ++.-.|.-++-. ++.|.+|-|-|+- =++.||.|.. -|+|.
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq-----------~g~v~ 332 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ-----------SGKVY 332 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC-----------CCcEE
Confidence 9988 999999986 2 233334444544 4778888887654 5999999876 89999
Q ss_pred EEeCCCCeEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 385 VSSILTGKCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 385 lWdi~tG~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
+||+..-... .||.-+.. + ..|...+||.||.+|+-..+|++|--|
T Consensus 333 vwdL~~~ep~~~ttl~~s~~-----------~---------------------~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKS-----------G---------------------STVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred EEECCCCCCccCceEEeccc-----------c---------------------ceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 9999765431 22211111 1 178889999999999999999999988
Q ss_pred c
Q 012410 463 S 463 (464)
Q Consensus 463 d 463 (464)
|
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
Confidence 7
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=160.66 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=207.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS- 175 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~- 175 (464)
.|+.||.++.+|++++|.+.||.++.++.+ ++.|+||+|+|.++.-+.+-|.+ + .+-|-+-.-|.-..
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~-------~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E-------CVLIVNPIFGDRLEV 479 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------ceEEeCccccchhhh
Confidence 399999999999999999999999999966 55799999999988766644333 2 22222222231100
Q ss_pred --cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCeEEEEecCCCEeEEEEeC-----------
Q 012410 176 --GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKIRS----------- 236 (464)
Q Consensus 176 --~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~~l~tl~~~~V~~Vafs~----------- 236 (464)
+..+|.. + |+- ...|.++-.|.-. -|-|+..-+.+.|..|.++-
T Consensus 480 ~~t~ell~~----------~--~~~-----~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 480 GPTKELLAS----------A--PNE-----SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cchhhhhhc----------C--CCc-----cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 1111111 1 000 1223455566522 23344333456777777753
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
+....|-|-++..+..+--|.-..+.+-.|.|.|. --+++++. -..|+|||+..+++++.|.....++.+++.+|.|.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 23455667777666665556433356789999984 44555543 36899999999999988888888999999999999
Q ss_pred EEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe------
Q 012410 317 LFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS------ 387 (464)
Q Consensus 317 llaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd------ 387 (464)
.|+.++ |+.+-..|++ .+..++|.-|..- |.+|+|++-=-++||||. ||++-|+.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd-----------Dgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD-----------DGTVIVFHGMVYND 684 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC-----------CCcEEEEeeeeehh
Confidence 999999 9999888884 6789999999987 899999999999999987 99999984
Q ss_pred CCCC---eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 388 ILTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 388 i~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
+... --++.|+||..- .. -.|..+.|+|.-..|+|++.|||||||
T Consensus 685 l~qnpliVPlK~L~gH~~~---~~---------------------------~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKT---ND---------------------------LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceee---cc---------------------------cceEeecccCCCceEEecCCCceEEee
Confidence 2121 136788888740 00 068889999999999999999999999
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-15 Score=152.74 Aligned_cols=273 Identities=10% Similarity=0.101 Sum_probs=203.1
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
..+..+-|- ..+|.++..+|++++|++. ++..|+.++. -.-.|.+..|.|+|...+.+| +-. +-..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s---~rr------ky~y 283 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTS---GRR------KYLY 283 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEec---ccc------eEEE
Confidence 444444444 7899999999999999843 4557888766 456799999999999444433 445 7888
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS------- 236 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~------- 236 (464)
.||+.+++..+-.++...+ ..-....+.| |+|++||..+..+-|-|=..+|++++.+++ .+.|.+++|+.
T Consensus 284 syDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred EeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 9999999986533333322 1112256776 899999999999999999999999999998 57789999975
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcce--eeEEEEccCCCeEEEEeCCCeEEEEECCCC------cEEEEcccCCCceE
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNA------ELMEVSRTEFMTPS 307 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~--~~V~F~~~~~~~lla~s~D~tIkIWDv~tg------~~l~~l~gh~~~v~ 307 (464)
+.++.|-+||+.+-.|+++|... +.+ .+++-+. .+..+++||.-|-|.|||..+- +.+.++-.=+-.|.
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeec-CccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 36789999999999999999843 222 5566555 4566667889999999995442 23444444445789
Q ss_pred EEEEcCCCcEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 308 AFIFLYENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 308 sv~FspdgqllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
++.|+||+|+||-+| +.++||=.+ .-.....|.-....+. -|.+++|||.|-+||-|-+ +|.|
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg--~vtc~aFSP~sG~lAvGNe-----------~grv 506 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG--HVTCMAFSPNSGYLAVGNE-----------AGRV 506 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc--ceEEEEecCCCceEEeecC-----------CCce
Confidence 999999999999887 779999886 4433333332222111 1889999999999999986 9999
Q ss_pred EEEeC
Q 012410 384 NVSSI 388 (464)
Q Consensus 384 klWdi 388 (464)
.||.+
T Consensus 507 ~l~kL 511 (514)
T KOG2055|consen 507 HLFKL 511 (514)
T ss_pred eeEee
Confidence 99986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=157.11 Aligned_cols=232 Identities=16% Similarity=0.213 Sum_probs=164.4
Q ss_pred cCceEEEEeCCCC-cEEEEecCCCcEEEEeCC------CCeEEEEecCCCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 186 KWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 186 ~~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~------tg~~l~tl~~~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
+.+.+++|.|-.. +++|.|+--|+|-+||+. +|--+.+.+...|..+.|+| +.|+||++=|+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3444899975444 789999999999999994 23334455577899999987 5899999999997
Q ss_pred CcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCC-cEEEEEe-CC
Q 012410 250 GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~ 324 (464)
+..-..+.- ......+.+|+. .+..+|+++.=|...+||.+++.- .+-++-|.+.|.+++++|-. ++|||+| |+
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred hhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 643222221 112336667766 356777777445999999999765 67778899999999999865 5788999 99
Q ss_pred eEEEEeCC---Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----CCeEEE
Q 012410 325 TVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----TGKCLA 395 (464)
Q Consensus 325 TIklWd~~---Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~----tG~cl~ 395 (464)
|.||||++ ++- +-....|... |+++||||+|-.|++-|. |.+|||||.. .-..+.
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~Hrrs-----V~sAyFSPs~gtl~TT~~-----------D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRS-----VNSAYFSPSGGTLLTTCQ-----------DNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccce-----eeeeEEcCCCCceEeecc-----------CCceEEeecccccccCCccc
Confidence 99999972 443 2344467766 999999999999999987 9999999973 112222
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+| .|++ ..++.| .....+|.||-+.|+.|..-.-|-+.|
T Consensus 410 ~I-~Hn~---------------------------~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 410 TI-PHNN---------------------------RTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ee-eccC---------------------------cccccc-cchhheeCCCccEEEEeccCcceeEEc
Confidence 33 3433 011111 223457888888888887666555543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-15 Score=163.72 Aligned_cols=282 Identities=13% Similarity=0.132 Sum_probs=195.1
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe-CCCCcEEEEecCCCc
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD-DVNGKVLTYSAQDSI 209 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs-~pdGk~LaSgs~D~t 209 (464)
.-+.+-|+|+-..+++ +.++ -.|.+||-+.|++..+|..... ....+..++|= +-|--.|..||.||.
T Consensus 1066 ~pk~~~~hpf~p~i~~----ad~r------~~i~vwd~e~~~~l~~F~n~~~-~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAA----ADDR------ERIRVWDWEKGRLLNGFDNGAF-PDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CCceeeecCCCceeEE----cCCc------ceEEEEecccCceeccccCCCC-CCCccceeeeecccchhheeeeccCce
Confidence 4678899999999999 3345 5899999999998665543331 11222245552 234457888999999
Q ss_pred EEEEeCC-C----CeEEEE---ecC----CCEeEEEE----------eCCCceeEEEEEcCCCcEEEEEe-eCCcceeeE
Q 012410 210 YKVFDLK-N----YTMLYS---ISD----KHVQEIKI----------RSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKV 266 (464)
Q Consensus 210 iKlWdl~-t----g~~l~t---l~~----~~V~~Vaf----------s~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V 266 (464)
||||+-. + -+++.. |++ ..=..+.+ ..++-..|+|||.+.-++.+.+. +...-+.++
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 9999721 2 223221 211 00001111 11345789999999888887765 222222333
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcccCCCc--eEEEEEcCCCcE-EEEEe-CCeEEEEeCCC-ceEEE
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLYENQL-FLTFR-NRTVAVWNFRG-ELVTS 338 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~gh~~~--v~sv~Fspdgql-laS~s-D~TIklWd~~G-e~l~t 338 (464)
.-.-..++.+++|-.||.||++|.+.-. .+.+.+.|+.. |.-+.|-+.|-- |+|+| ||.|++||+++ ...+.
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 3222224667778899999999998855 46788899887 888888886655 89999 99999999987 44445
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+.--..|.++..+.++..+++..+||||+ .+.|+||++ .|+.+..++-+..+.
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs------------~q~ikIy~~-~G~~l~~~k~n~~F~-------------- 1347 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGS------------AQLIKIYSL-SGEQLNIIKYNPGFM-------------- 1347 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecC------------cceEEEEec-ChhhhcccccCcccc--------------
Confidence 55444454443467899999999999997 489999996 899899888665411
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++....+.+++|+|-.-.||.|+.|.+|-|+.
T Consensus 1348 -------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1348 -------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -------------cCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 11112679999999999999999999999874
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=145.70 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=170.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEec-CCCEeEEEEeCC------Ccee--EEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS-DKHVQEIKIRSS------SHVP--LKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~-~~~V~~Vafs~s------~d~t--IklWdi~tG~~l~tl~~~ 259 (464)
+..|. .|+..|+-|+.|| +|++....- +|-.... +..|-+.-||.+ .+.| +|+.++..+..+-.+...
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp 87 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP 87 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC
Confidence 45586 7888999999998 999987753 3322222 345667777653 3334 888888877766655543
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc---CCCceEEEEEcCCCcEEEEEe---CCeEEEEeC-C
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF-R 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h~~~v~sv~FspdgqllaS~s---D~TIklWd~-~ 332 (464)
+.+-+|.+.. .+|++.=++. |.|+|+++-++++++.. |...+-++.+++++-++|--+ .|.|.|||. +
T Consensus 88 -t~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 -TSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred -CceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 6788888755 4666654433 99999999999997754 445566777777777888743 789999999 7
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
-+.+.+++.|... +-.++|+|||.+||++|+ -|| ||++.+.+|+-+..|+--.. |
T Consensus 163 l~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~-~------- 218 (391)
T KOG2110|consen 163 LQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY-P------- 218 (391)
T ss_pred ceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce-e-------
Confidence 8999999999988 889999999999999987 666 69999999999999865432 0
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-.|.+|+||||++.|++.|+-+|||+..
T Consensus 219 ------------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 219 ------------------------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ------------------------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1799999999999999999999999975
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=145.06 Aligned_cols=310 Identities=13% Similarity=0.102 Sum_probs=221.1
Q ss_pred ccceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 88 ~s~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
+.-|...-|. +.=+.+++.+|.+-+|+.-+++--+... .|+.-|.++..-.+|..| + +.-| |.|-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-S----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-S----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-e----cCcc------ceEEec
Confidence 3445555555 4445689999999999987787777775 899999999999999755 3 4555 777777
Q ss_pred Ee--------------------ccCCCC---Cc----------ccceeeccccCce---EEEEeCCCCcEEEEecCCCcE
Q 012410 167 YI--------------------RRGKPD---SG----------FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 167 ~i--------------------~~G~~~---~~----------~~l~~~~~~~~~~---~VaFs~pdGk~LaSgs~D~ti 210 (464)
|= ..|+.+ ++ ...|+..+++|.. .+|-. |+-..|+++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 62 111110 00 0112222344444 57775 777888999999999
Q ss_pred EEEeCCCCeEEEEec-CCCEeEEEEeCCCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 211 KVFDLKNYTMLYSIS-DKHVQEIKIRSSSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 211 KlWdl~tg~~l~tl~-~~~V~~Vafs~s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
+||+ .-+++.+.. .+.+.+++|.|+.. +-.-+.|+|+-. +-++.-.......|.|+| ++..|++|+.|
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d 468 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-LVTIHTDNEQLSVVRYSP-DGAFLAVGSHD 468 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-eEEEEecCCceEEEEEcC-CCCEEEEecCC
Confidence 9999 556666544 78899999999753 334677999844 444432257779999999 57888889999
Q ss_pred CeEEEEECCC-CcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCce----------------EEEe---c
Q 012410 283 ENLQILDVRN-AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL----------------VTSF---E 340 (464)
Q Consensus 283 ~tIkIWDv~t-g~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~----------------l~tl---~ 340 (464)
+.|.|+-|.. |.... .-+-|-..+..+.||+|+|.|.+-| |--|-.|. -++| .--| -
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c~lGF~v~g 547 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTCTLGFEVFG 547 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-cccCcccceecceeeeeeEEEEEEEEec
Confidence 9999998865 44333 3334447888999999999999999 99999994 3332 1112 1
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccCCCCCCcccccCCCCCCc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+-.+ .+++.++-|.+.++||||-+ -|+|+|+.-.-- -.-..+.||+.
T Consensus 548 ~s~~----t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs~--------------- 597 (626)
T KOG2106|consen 548 GSDG----TDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHSS--------------- 597 (626)
T ss_pred ccCC----chHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeeccccc---------------
Confidence 2211 23778888899999999865 799999964211 12346677776
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|.+|+|.-+.+.|.|.+.|..|..|+.
T Consensus 598 -------------------~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 -------------------HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -------------------eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999888889999999974
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=154.93 Aligned_cols=261 Identities=14% Similarity=0.174 Sum_probs=194.8
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
-|..|+|-|||..|+.+. ++ .+.|.|...|-+.++.+.|...+ ..||++ .||+..|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llqtLKgHKDtV----ycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQPLKGHKDTV----YCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCcccccccccccceE----EEEEEc-cCCceeccCCCceeE
Confidence 689999999999999943 33 68899999999998888887543 389998 799999999999999
Q ss_pred EEEeCCC-CeEEEEecCCCEeEEEEeCCCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 211 KVFDLKN-YTMLYSISDKHVQEIKIRSSSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 211 KlWdl~t-g~~l~tl~~~~V~~Vafs~s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
-||.-+- |.+-|+ +++.|+...|+|-++ .-.-+|+.+.-.+.+-- ...++.+.+|.. +|..++.|-.|
T Consensus 78 I~W~~klEG~LkYS-H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k--ss~R~~~CsWtn-DGqylalG~~n 153 (1081)
T KOG1538|consen 78 IIWTSKLEGILKYS-HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK--SSSRIICCSWTN-DGQYLALGMFN 153 (1081)
T ss_pred EEecccccceeeec-cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh--hheeEEEeeecC-CCcEEEEeccC
Confidence 9998763 444333 467899999998322 23568888765444311 125677888876 45555558899
Q ss_pred CeEEEEECCCCcE---EEEcccCCCceEEEEEcCCC-----cEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeE
Q 012410 283 ENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 283 ~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdg-----qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
|||-|=| .+||. ++...|....||+++|+|.. ..++... .+|...+.++|+.+-. +...+..|.|
T Consensus 154 GTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-~r~L~FdP~C---- 227 (1081)
T KOG1538|consen 154 GTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-DRALNFDPCC---- 227 (1081)
T ss_pred ceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-cccCCCCchh----
Confidence 9999998 66664 33445677899999999864 3566666 7777777777776531 0111233333
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+..-|+|.++.-|+. |+-++++- ..|-.|.|+-....
T Consensus 228 isYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D~------------------------------- 264 (1081)
T KOG1538|consen 228 ISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQDS------------------------------- 264 (1081)
T ss_pred heeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccce-------------------------------
Confidence 556689999988864 99999996 57888888754332
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|||+|+..|+||+.+-|..||||..++
T Consensus 265 ---WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 265 ---WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ---eEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999999999999999999998765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-15 Score=150.31 Aligned_cols=209 Identities=12% Similarity=0.166 Sum_probs=150.2
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC-C----------CCcccceeeccccCce---EE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-P----------DSGFALFESESLKWPG---FV 191 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~-~----------~~~~~l~~~~~~~~~~---~V 191 (464)
..|-.-+..|.-++.|+..+.+| -++. ..+.||++..-- + ..-.++|+.. +|-+ .+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~as--wse~------G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~--ghk~EGy~L 217 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCAS--WSEN------GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN--GHKGEGYGL 217 (440)
T ss_pred cccccccceeeecccCCcceeee--eccc------CcEEEEEchhhhhhhcCccccccccccCceEEec--ccCccceee
Confidence 45666788888888887777755 5666 789999983211 1 1123555533 3333 58
Q ss_pred EEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 192 EFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 192 aFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
.||+- .| .|+||.--+.|.+|...+|.-. + + ...|.+|...|-.++++|
T Consensus 218 dWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~-------------------------v--d--~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 218 DWSPIKTG-RLLSGDCVKGIHLWEPSTGSWK-------------------------V--D--QRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred eccccccc-ccccCccccceEeeeeccCcee-------------------------e--c--CccccccccchhhhccCC
Confidence 88731 34 4667777777888877665431 0 0 012333446667777888
Q ss_pred cCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---C-CceEEEeccC
Q 012410 271 QFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---R-GELVTSFEDH 342 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~-Ge~l~tl~gH 342 (464)
-..+-++++|.|++|+|||++++ -|+-+ +.|..-|..+.|+.+-.+||||+ |||++|||+ . |+.+.+|+-|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 65667777899999999999999 57766 78888999999998777999999 999999997 2 8899999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
... |.+|.|+|.....+.++ |+|..|-|||+..
T Consensus 347 k~p-----ItsieW~p~e~s~iaas----------g~D~QitiWDlsv 379 (440)
T KOG0302|consen 347 KAP-----ITSIEWHPHEDSVIAAS----------GEDNQITIWDLSV 379 (440)
T ss_pred cCC-----eeEEEeccccCceEEec----------cCCCcEEEEEeec
Confidence 988 89999999654333332 2399999999854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-16 Score=154.59 Aligned_cols=320 Identities=14% Similarity=0.121 Sum_probs=215.6
Q ss_pred CcchhhhhhhcccccccCCccccccchhhhhhccccc--eeeeecCCCCCcccchhhhccccceE------EEEec---c
Q 012410 30 GFVNSVKKLQRREICSKRDRAFSISNAQERFRNMHLV--EEYDTHDPKGHCPFVLPFLMKRTKVI------EIVAA---R 98 (464)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~s~v~------~~~~a---g 98 (464)
...|.++.=+...|..-.--.|..-..|.+|-..+=+ ..|+|.-.- -..+||.......-+ ..|-. .
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--GIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--ceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 3566677667677777777777777788888877755 455554332 122333333332222 23333 4
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
-++|++...|+|++.|+.++++...+ .+|..-|..+-|.|+.-.|+. | +|.| +++|||+|+++.|...|-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvl-s--~SkD------~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVL-S--ASKD------HSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEE-E--ecCC------ceEEEEeccCCeEEEEec
Confidence 58888899999999999999999999 669888999999999855544 2 4566 899999999999976555
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCce-eEEEEEcCCCcE-EEEE
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHV-PLKILSIEDGTV-LKVF 256 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~-tIklWdi~tG~~-l~tl 256 (464)
+.+. |..++-+|.|+ ++|..|||++.|.++|+|++...+.-.-+. .++.|+|+... | +.|-++ +-.|
T Consensus 176 G~eg-HrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~~~~~t~~p-----fpt~~~~fp~f 244 (385)
T KOG1034|consen 176 GVEG-HRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITYSPNKTTRP-----FPTPKTHFPDF 244 (385)
T ss_pred cccc-ccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhh----hhcccCCCCccCc-----CCccccccccc
Confidence 5552 55556699997 999999999999999999998654432221 11333332110 0 011111 0111
Q ss_pred ---eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC-CCCcEE---------EEcccCCC----ceE--EEEEcCCCcE
Q 012410 257 ---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNAELM---------EVSRTEFM----TPS--AFIFLYENQL 317 (464)
Q Consensus 257 ---~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv-~tg~~l---------~~l~gh~~----~v~--sv~Fspdgql 317 (464)
.-|...|.+|.| +++.+|++|-++-|..|-. +-++-+ .+.-+++. .+| -++|.|=+++
T Consensus 245 st~diHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cccccccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 112234466666 6789999998889999986 223321 12223332 233 4667788999
Q ss_pred EEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 318 FLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 318 laS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
||.+. -|+|-+||++ -+ ...||..+... ..|...+||-||.+|+-.|+ |+||-=||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcd-----------d~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCD-----------DGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeC-----------CCcEEEEEee
Confidence 99999 9999999994 33 34456555443 24899999999999999997 9999999853
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-13 Score=137.87 Aligned_cols=216 Identities=12% Similarity=0.160 Sum_probs=146.1
Q ss_pred EEEecCCCcEEEEeCCC-Ce--EEEEec-CCCEeEEEEeCC---------CceeEEEEEcC-CCcE--EEEEeeCCccee
Q 012410 201 LTYSAQDSIYKVFDLKN-YT--MLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE-DGTV--LKVFYHLLHRNK 264 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~t-g~--~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~-tG~~--l~tl~~~~~~~~ 264 (464)
.+..+.|++|.+||+.+ |+ ++.++. ......++|+|+ .+..|.+|++. +|+. +.+... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCce
Confidence 34457799999999974 54 556665 356778888874 45678999996 5653 222221 12346
Q ss_pred eEEEEccCCCeEEEEe-CCCeEEEEECCC-C---cEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C-Cce
Q 012410 265 KVDFIEQFNEKLLVKQ-ENENLQILDVRN-A---ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R-GEL 335 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g---~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~-Ge~ 335 (464)
.|+|+|+ +..+++++ .++.|.+||+.+ | +.+..+.++ ..+..++|+|||+.+..++ +++|.+||+ + |++
T Consensus 84 ~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 7899884 55666665 689999999974 3 334444433 4577889999999886655 899999999 4 554
Q ss_pred EE------EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC--eEEEEEccCCCCCC
Q 012410 336 VT------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG--KCLAKINATNCSPK 405 (464)
Q Consensus 336 l~------tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG--~cl~tl~gh~~~~~ 405 (464)
.. +...... ...++|+|||++|++.+. .+++|.+||+. +| +.+.++..+..
T Consensus 162 ~~~~~~~~~~~~g~~------p~~~~~~pdg~~lyv~~~----------~~~~v~v~~~~~~~~~~~~~~~~~~~p~--- 222 (330)
T PRK11028 162 VAQEPAEVTTVEGAG------PRHMVFHPNQQYAYCVNE----------LNSSVDVWQLKDPHGEIECVQTLDMMPA--- 222 (330)
T ss_pred cccCCCceecCCCCC------CceEEECCCCCEEEEEec----------CCCEEEEEEEeCCCCCEEEEEEEecCCC---
Confidence 21 1111111 357999999999988764 38999999997 34 44555543321
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
... + -.+...++|+|||+.||++++ +++|.+|+
T Consensus 223 ~~~----~---------------------~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 223 DFS----D---------------------TRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred cCC----C---------------------CccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 000 0 013346899999999999975 78999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=146.83 Aligned_cols=270 Identities=13% Similarity=0.140 Sum_probs=177.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|...|.|+-|..++. |.+ +... ..+++|.+.+.+..-.+.+|....+- ...-- |++ .|.+-+.
T Consensus 12 p~~~~v~s~~fqa~~r-L~s----g~~~------G~V~~w~lqt~r~~~~~r~~g~~~it---~lq~~-p~d-~l~tqgR 75 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMS----GLSV------GIVKMWVLQTERDLPLIRLFGRLFIT---NLQSI-PND-SLDTQGR 75 (323)
T ss_pred cccchheehhhccchh-hhc----cccc------ceEEEEEeecCccchhhhhhccceee---ceeec-CCc-chhhcCC
Confidence 4777799999999887 544 3333 79999999887765445544432221 12221 665 5667789
Q ss_pred CCcEEEEeCCCCeE--------------EEEec--CCCEeEEEEeCC--CceeEEEEEcCCCcEEEEEe------eCCcc
Q 012410 207 DSIYKVFDLKNYTM--------------LYSIS--DKHVQEIKIRSS--SHVPLKILSIEDGTVLKVFY------HLLHR 262 (464)
Q Consensus 207 D~tiKlWdl~tg~~--------------l~tl~--~~~V~~Vafs~s--~d~tIklWdi~tG~~l~tl~------~~~~~ 262 (464)
|.++-+|++.-+.. -.++. ...+....+.|+ .|. +.+-|- |...++.- ..++.
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~--g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDG--GDTTQVQIADDSERSKLGS 152 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhcc--CccceeEccCchhccccCc
Confidence 99999999987433 22222 122323333332 221 111111 11111110 01122
Q ss_pred e--eeEEEEccCCC-eEEEEeCCCeEEEEECCCCcEEE----------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 263 N--KKVDFIEQFNE-KLLVKQENENLQILDVRNAELME----------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 263 ~--~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~----------~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
+ .++.|-.- .. .+|+|-++|.+-+||+.++..+- -...|.+.|.++.|-+--..=++++ +..+-.
T Consensus 153 vmc~~~~~~c~-s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 153 VMCQDKDHACG-STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred eeeeecccccc-ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 2 12222121 12 34456799999999999984332 2345788899998876666667778 778889
Q ss_pred EeC--C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNF--R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~--~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
|++ + |.|... .-|...+ |.|+.|.+-|||+++|+++- |+.||+++-.|++-|+.|+-|+.
T Consensus 232 ~Sl~~s~gslq~~-~e~~lkn--pGv~gvrIRpD~KIlATAGW-----------D~RiRVyswrtl~pLAVLkyHsa--- 294 (323)
T KOG0322|consen 232 YSLNHSTGSLQIR-KEITLKN--PGVSGVRIRPDGKILATAGW-----------DHRIRVYSWRTLNPLAVLKYHSA--- 294 (323)
T ss_pred eeeccccCccccc-ceEEecC--CCccceEEccCCcEEeeccc-----------CCcEEEEEeccCCchhhhhhhhc---
Confidence 987 2 665321 1122222 33889999999999999986 99999999999999999999987
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|||+||...||.||.|+.|-||++
T Consensus 295 -------------------------------gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -------------------------------GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------------------------------ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999985
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-14 Score=148.23 Aligned_cols=244 Identities=9% Similarity=0.113 Sum_probs=153.1
Q ss_pred EEEeccceeehhcc------CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~------~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++|...+.+.... ...+.+|| .+|.+.+.+.. +.+.+.+.+|+|||+.|+.+|... .+ .++.+|
T Consensus 163 ~g~f~~~ia~v~~~~~~~~~~~~l~i~D-~~g~~~~~lt~-~~~~v~~p~wSpDg~~la~~s~~~-~~------~~l~~~ 233 (433)
T PRK04922 163 PGAFWTRIAYVTVSGAGGAMRYALQVAD-SDGYNPQTILR-SAEPILSPAWSPDGKKLAYVSFER-GR------SAIYVQ 233 (433)
T ss_pred CCcccceEEEEEEeCCCCCceEEEEEEC-CCCCCceEeec-CCCccccccCCCCCCEEEEEecCC-CC------cEEEEE
Confidence 45666665554332 22688888 46776666644 566799999999999999866322 22 579999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .+.. .-+....++|| |||+.|+.. +.++. ..|.+|
T Consensus 234 dl~~g~~~---~l~~--~~g~~~~~~~S-pDG~~l~~~~s~~g~------------------------------~~Iy~~ 277 (433)
T PRK04922 234 DLATGQRE---LVAS--FRGINGAPSFS-PDGRRLALTLSRDGN------------------------------PEIYVM 277 (433)
T ss_pred ECCCCCEE---Eecc--CCCCccCceEC-CCCCEEEEEEeCCCC------------------------------ceEEEE
Confidence 99888752 1111 11333478997 899987643 33331 124445
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCe--EEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~t--IkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~ 321 (464)
|+++|++.+ +..+......++|+| ++.+|+..+ .++. |.++|+.+++..+. ..++ .....+|||||+.|+..
T Consensus 278 d~~~g~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~--~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 278 DLGSRQLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN--YNARASVSPDGKKIAMV 353 (433)
T ss_pred ECCCCCeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC--CccCEEECCCCCEEEEE
Confidence 555554332 222212335678888 466677665 4444 66668778876543 2332 34468899999999876
Q ss_pred e-CC---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R-NR---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s-D~---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ ++ .|.+||+ +|+.. .|... .+ ..+..|+|||++|+..+. .+..+.|.++|+ +|.-.+.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~--------~~g~~~L~~~~~-~g~~~~~ 417 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATR--------EGGRGVLAAVST-DGRVRQR 417 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEE
Confidence 5 32 6999999 46654 55432 23 346789999999988765 122456888887 5666666
Q ss_pred EccCC
Q 012410 397 INATN 401 (464)
Q Consensus 397 l~gh~ 401 (464)
+..+.
T Consensus 418 l~~~~ 422 (433)
T PRK04922 418 LVSAD 422 (433)
T ss_pred cccCC
Confidence 65543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-15 Score=152.51 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=185.5
Q ss_pred eEEeeeccccc---EeeEee-cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc
Q 012410 109 VCAAFSRETNR---RICFLN-VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (464)
Q Consensus 109 ~~~~~~~~~g~---~l~~ln-~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~ 184 (464)
-+++||+.+-. ++..|. ...++.|||.-..|||.+|++ +++- -++.|||++.--+.-. .-+++
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGea------stlsiWDLAapTprik-aelts-- 507 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEA------STLSIWDLAAPTPRIK-AELTS-- 507 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----cccc------ceeeeeeccCCCcchh-hhcCC--
Confidence 78999965421 222221 124678999999999999999 6665 7899999965443110 11111
Q ss_pred ccCce--EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 185 LKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 185 ~~~~~--~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
.-|. .++.| ||.++.-++-.|+.|.||||.+-.++..|. .+.+.+|.+++ .-|.|||-||+.+|..
T Consensus 508 -sapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq 585 (705)
T KOG0639|consen 508 -SAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ 585 (705)
T ss_pred -cchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence 1122 58887 999999999999999999999999999988 57899999986 3788999999999977
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.... ...++++-..|+ ++-+++|=+++++-|... ++.-...+.-|..-|-++-|.|-|+.|+|.+ |.-+-.|-.
T Consensus 586 lqqhdF-~SQIfSLg~cP~-~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 586 LQQHDF-SSQIFSLGYCPT-GDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hhhhhh-hhhheecccCCC-ccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 754332 256788888884 678888889999998874 4444555666778899999999999999999 999999998
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
-|.-+-....-.. |.++.+|.|.++|++||- |...-++.+
T Consensus 663 PyGasiFqskE~Ss------VlsCDIS~ddkyIVTGSG-----------dkkATVYeV 703 (705)
T KOG0639|consen 663 PYGASIFQSKESSS------VLSCDISFDDKYIVTGSG-----------DKKATVYEV 703 (705)
T ss_pred ccccceeeccccCc------ceeeeeccCceEEEecCC-----------CcceEEEEE
Confidence 5776544443332 788999999999999985 766666654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=152.95 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=112.1
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-------EEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTV 326 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TI 326 (464)
+.+|...+-.++|.|.++.-|++||+|.+|+||++=.+- .+..|.||+..|--|++.|-- +.|+|++ |.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 346778889999999555566668999999999986653 456889999999999999854 4566776 9999
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
+|||+ +|+-+-+|. |..- |+|+.|+-||.+|++.|+ |..|||||..+|+.+..-.+|.+
T Consensus 157 ~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred EEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccC
Confidence 99999 899998988 8776 899999999999999998 99999999999999999889986
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-14 Score=146.65 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=154.0
Q ss_pred EEEeccceeehhccCC--eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc
Q 012410 93 EIVAARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g--~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
.++|.+.+.+.....+ .+.++| .+|.....+. .+.+.+.+..|||||+.|+.+|. ...+ ..+.+|++.+
T Consensus 159 ~g~f~~~iayv~~~~~~~~L~~~D-~dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~-~~~~------~~I~~~dl~~ 229 (427)
T PRK02889 159 RGVFSTRIAYVIKTGNRYQLQISD-ADGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSF-ESKK------PVVYVHDLAT 229 (427)
T ss_pred CcccccEEEEEEccCCccEEEEEC-CCCCCceEec-cCCCCcccceEcCCCCEEEEEEc-cCCC------cEEEEEECCC
Confidence 5777788887775544 455555 4677766663 46677999999999999988662 2222 5799999998
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEE-ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCC
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIED 249 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS-gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~t 249 (464)
|+.. .+... -++...++|| |||+.|+. .+.|+...||.+. +.+
T Consensus 230 g~~~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d------------------------------~~~ 273 (427)
T PRK02889 230 GRRR---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVN------------------------------ADG 273 (427)
T ss_pred CCEE---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEE------------------------------CCC
Confidence 8753 12111 1344478997 89998874 5667766666432 222
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEEC--CCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
|+ ++.+..+...+.++.|+| ++.+|+..+ .++..+||.+ .+++..+. +.++ ...+.+|||||+.|+..+ ++
T Consensus 274 ~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 274 SG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--YNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--CcCceEECCCCCEEEEEEccC
Confidence 22 222322112345677888 466676655 4567777754 55654332 3332 234567999999999776 43
Q ss_pred ---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 325 ---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 325 ---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.|.+||+ +|+. +.+..+ .+ ..+..|+|||+.|+..+.. +....+.+-++ +|+-.+.+..+
T Consensus 350 g~~~I~v~d~~~g~~-~~lt~~-~~-----~~~p~~spdg~~l~~~~~~--------~g~~~l~~~~~-~g~~~~~l~~~ 413 (427)
T PRK02889 350 GAFKLYVQDLATGQV-TALTDT-TR-----DESPSFAPNGRYILYATQQ--------GGRSVLAAVSS-DGRIKQRLSVQ 413 (427)
T ss_pred CcEEEEEEECCCCCe-EEccCC-CC-----ccCceECCCCCEEEEEEec--------CCCEEEEEEEC-CCCceEEeecC
Confidence 6999999 4664 445433 22 3568999999999988751 11223555565 67766667555
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 414 ~ 414 (427)
T PRK02889 414 G 414 (427)
T ss_pred C
Confidence 4
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=148.09 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=190.4
Q ss_pred hccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee
Q 012410 104 LAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~ 182 (464)
++....+++||+..-..--.++. ....-+.|+.++..+. |+++| .+.| ..++||. +.|+ ..+.++...
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas--~~gd------k~~~~~~-K~g~-~~~Vp~~~k 76 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVAS--MAGD------KVMRIKE-KDGK-TPEVPRVRK 76 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEee--cCCc------eeEEEec-ccCC-CCccceeec
Confidence 34455789999664332222211 1223489999999876 77766 5555 6888887 7777 333343332
Q ss_pred ccccC----ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcC
Q 012410 183 ESLKW----PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIE 248 (464)
Q Consensus 183 ~~~~~----~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~ 248 (464)
. .+- +....|| .++.||++.++|||||++.--|.+.+.+ ..|..|.+.. +.-+-|-|-++.
T Consensus 77 ~-~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 77 L-TGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred c-ccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 1 010 1134454 7999999999999999995555556663 5677777743 334568899999
Q ss_pred CCcEEEEEeeC-CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 249 DGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 249 tG~~l~tl~~~-~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
|+.--.+|.+. ...++=+.|++ +...+|. .++||+|.|||++....+ +.+..|......|.|||-+. +|+|-+ |
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~-skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSP-SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred cCccccceecCCCCeEEEeeccc-ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988889854 45668899998 4555665 789999999998776554 46788998889999998765 566777 9
Q ss_pred CeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCC
Q 012410 324 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 401 (464)
Q Consensus 324 ~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~ 401 (464)
..|-++|.. -....+|.-. +| ..+|+|+|+|.+|+.|.. .|.|--+|+.. -+.++++.+|.
T Consensus 231 kki~~yD~~s~~s~~~l~y~---~P---lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYS---HP---LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred ceEEEeecccccccceeeec---CC---cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceEeeecc
Confidence 999999984 5555555432 12 678999999999999975 89999999964 46789999998
Q ss_pred C
Q 012410 402 C 402 (464)
Q Consensus 402 ~ 402 (464)
.
T Consensus 294 ~ 294 (673)
T KOG4378|consen 294 A 294 (673)
T ss_pred c
Confidence 7
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-13 Score=140.24 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=136.1
Q ss_pred CCcEEEEeCCCCeEEE-EecCCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTMLY-SISDKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
...+.|||...+.... +-....+.+.+|||+ .+..|.+|++.+|+........ ..+..++|+| ++.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SP-DG~ 255 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSP-DGS 255 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECC-CCC
Confidence 3478888887554432 222457888999885 2346899999999754432221 3356789999 466
Q ss_pred eEEEE-eCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEE--eCCCceEEEeccCCCCcC
Q 012410 275 KLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 275 ~lla~-s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklW--d~~Ge~l~tl~gH~~~~~ 347 (464)
+|+.. +.++ .|.+||+.+|++.+...++ ..+....|+|||+.|+..+ ++..+|| |+.|...+.+..+...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~-- 332 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ-- 332 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC--
Confidence 67764 4444 5889999999987765554 4567889999999888777 4566777 5544334445444333
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.....|||||++|+..+.. +....|.+||+.+|+. ..|....
T Consensus 333 ---~~~~~~SpDG~~Ia~~~~~--------~g~~~I~~~dl~~g~~-~~Lt~~~-------------------------- 374 (429)
T PRK03629 333 ---NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVLTDTF-------------------------- 374 (429)
T ss_pred ---ccCEEECCCCCEEEEEEcc--------CCCceEEEEECCCCCe-EEeCCCC--------------------------
Confidence 3468899999999887641 1245799999998874 3443211
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
...+..|||||+.|+.++.|+.
T Consensus 375 ---------~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 375 ---------LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ---------CCCCceECCCCCEEEEEEcCCC
Confidence 2235689999999999998876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-13 Score=143.08 Aligned_cols=244 Identities=10% Similarity=0.112 Sum_probs=154.6
Q ss_pred EEEeccceeehhccCC------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAHSG------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++|...|.++....+ .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|.. ..+ .++.+|
T Consensus 161 ~g~f~~~iafv~~~~~~~~~~~~l~~~d-~dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~-~g~------~~i~~~ 231 (435)
T PRK05137 161 KGYFDTRIVYVAESGPKNKRIKRLAIMD-QDGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYA-NGR------PRVYLL 231 (435)
T ss_pred CCcCCCeEEEEEeeCCCCCcceEEEEEC-CCCCCcEEEec-CCCCeEeeEECCCCCEEEEEEec-CCC------CEEEEE
Confidence 4777777877766555 667777 46777777744 66779999999999999887632 223 689999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEE-ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS-gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. ..+. .-+.....+|| |||+.|+. .+.|+... |.+|
T Consensus 232 dl~~g~~~----~l~~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~------------------------------Iy~~ 275 (435)
T PRK05137 232 DLETGQRE----LVGN-FPGMTFAPRFS-PDGRKVVMSLSQGGNTD------------------------------IYTM 275 (435)
T ss_pred ECCCCcEE----Eeec-CCCcccCcEEC-CCCCEEEEEEecCCCce------------------------------EEEE
Confidence 99888752 1121 11233378897 89998764 44444322 3334
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC--CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D--~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
|+++|++. .+..+......++|+| ++.+|+..+ .+ ..|.+||+.+++..+...+ ...+....|||||+.|+..+
T Consensus 276 d~~~~~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 276 DLRSGTTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ECCCCceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEE
Confidence 44444432 2332223345677887 456676655 33 3688889887776554432 33455678999999998766
Q ss_pred -C---CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC--CeEEEEeCCCCeEEEE
Q 012410 323 -N---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA--GSINVSSILTGKCLAK 396 (464)
Q Consensus 323 -D---~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D--gtIklWdi~tG~cl~t 396 (464)
+ ..|.+||.+|...+.+..- .. +.+..|||||+.|+-.+.. .+.. ..+.+.|+ +|+..+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~~~lt~~-~~-----~~~p~~spDG~~i~~~~~~-------~~~~~~~~L~~~dl-~g~~~~~ 418 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGERILTSG-FL-----VEGPTWAPNGRVIMFFRQT-------PGSGGAPKLYTVDL-TGRNERE 418 (435)
T ss_pred cCCCceEEEEEECCCCceEeccCC-CC-----CCCCeECCCCCEEEEEEcc-------CCCCCcceEEEEEC-CCCceEE
Confidence 3 3688899866555555421 11 4578999999999876541 1111 35777786 4444555
Q ss_pred Ec
Q 012410 397 IN 398 (464)
Q Consensus 397 l~ 398 (464)
|.
T Consensus 419 l~ 420 (435)
T PRK05137 419 VP 420 (435)
T ss_pred cc
Confidence 54
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=152.32 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=167.5
Q ss_pred eEEEEec--cceeehhccCCeEEeeecccccEeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 91 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 91 v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~-ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
|.++..+ ...|.+.+-|.+++.||+.++++.-. ++.+|..-|+|++|.|++.-+... |+-| ..+.|||
T Consensus 103 ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRD------g~illWD 173 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRD------GEILLWD 173 (720)
T ss_pred eEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee---ccCC------CcEEEEE
Confidence 4444444 45667777888999999999887765 668999999999999998765442 4556 6999999
Q ss_pred eccCCCCC-------------ccc-----c----ee-----eccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCe
Q 012410 168 IRRGKPDS-------------GFA-----L----FE-----SESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYT 219 (464)
Q Consensus 168 i~~G~~~~-------------~~~-----l----~~-----~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~ 219 (464)
++.-..++ +-+ + .. ......+..|.| -|..+|||++. |++||||||..-+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccc
Confidence 96444211 100 0 00 001222334666 47789999888 9999999999776
Q ss_pred EEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCc--EE
Q 012410 220 MLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAE--LM 296 (464)
Q Consensus 220 ~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~--~l 296 (464)
+.+.... ...-.+...+-. .+.-+.|+-+ +|.+|+|...|++|..||+.+-. .+
T Consensus 252 ~~~r~ep--~~~~~~~t~skr---------------------s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~ 308 (720)
T KOG0321|consen 252 TAYRQEP--RGSDKYPTHSKR---------------------SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV 308 (720)
T ss_pred cccccCC--CcccCccCcccc---------------------eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch
Confidence 6554331 111111100000 1112222222 36788888899999999988733 23
Q ss_pred EEcccCCC---ceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECC--CCCEEEEEec
Q 012410 297 EVSRTEFM---TPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCK 368 (464)
Q Consensus 297 ~~l~gh~~---~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSp--Dg~~LaSgs~ 368 (464)
..+.||.. .+.+ ..|||++.++|++ |...-+|.+ + -+-+..|.||+-- |..|++.| ++..+.+ |+
T Consensus 309 ~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e-----Vt~V~w~pS~~t~v~Tc-Sd 381 (720)
T KOG0321|consen 309 AEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE-----VTTVRWLPSATTPVATC-SD 381 (720)
T ss_pred hhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----EEEEeeccccCCCceee-cc
Confidence 34444432 2222 3789999999999 999999999 4 4457789999876 77888865 5665554 65
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
|-+++||++..|-|-.
T Consensus 382 -----------D~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 382 -----------DFRVKIWRLSNGLEEI 397 (720)
T ss_pred -----------CcceEEEeccCchhhc
Confidence 9999999998776543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=144.21 Aligned_cols=258 Identities=15% Similarity=0.175 Sum_probs=177.8
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec--C---CCEeEEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D---KHVQEIKI 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~---~~V~~Vaf 234 (464)
.+++|.|..+|+..+.|+.+. .+.+.|.|.+- .+..+.||+.||+||+||+.+-.....+. . ..--+++.
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~----~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPP----ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred CeEEEEeccchhhhheecCCC----CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 499999999999887666555 33447888643 35568899999999999998655432222 1 22334444
Q ss_pred eC------------CCceeEEEEEcCCCcE-EEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc----EE
Q 012410 235 RS------------SSHVPLKILSIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LM 296 (464)
Q Consensus 235 s~------------s~d~tIklWdi~tG~~-l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~----~l 296 (464)
.. ..+..|-+||+..-+. +..+. .|..-|..|.|.|.+++.||+||.||-|-|+|+..-. ++
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 21 3678899999987665 66665 4447789999999999999999999999999987643 33
Q ss_pred EEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCC------cCCC-CeeEEEECCCCCEEEEE
Q 012410 297 EVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW------HPDC-NTNNIYITSDQDLIISY 366 (464)
Q Consensus 297 ~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~------~~~~-~v~svafSpDg~~LaSg 366 (464)
+++. |...|..+.|+-++ +.|.+-+ ..|.++|+. +|.+...|+..... ..+| +|-...-..|+++.+-+
T Consensus 206 ~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 206 HVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred Hhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 4444 44568888999777 3366667 999999999 69988877754210 0001 12233335566766665
Q ss_pred ecCCCccccccCCCCeEEEEe-CC---CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 367 CKAEPEDQWMEGSAGSINVSS-IL---TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWd-i~---tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.. .++-++|-.-+ .. .++-++.|+||.. +-|.++.
T Consensus 285 g~--------~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~---------------------------------eiVR~i~ 323 (376)
T KOG1188|consen 285 GT--------DSNKGTIFPLVDTSSGSLLTEPAILQGGHE---------------------------------EIVRDIL 323 (376)
T ss_pred cc--------ccCceeEEEeeecccccccCccccccCCcH---------------------------------HHHHHHh
Confidence 43 12234443333 22 3455667777432 2788999
Q ss_pred EcCCCCEEEEeeCCCcEEeccC
Q 012410 443 YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd~ 464 (464)
|.-.+..|+||++||.+.+|.+
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhcccceeeccCCCceEEEEec
Confidence 9999999999999999999963
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=165.43 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=200.1
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
-|.+..| .+|-+.|+++.|-.-|.++|+ ++|| +.+|||...++.+++..++|+.+.. -.|-+ .+
T Consensus 180 mk~ikrL-lgH~naVyca~fDrtg~~Iit----gsdd------~lvKiwS~et~~~lAs~rGhs~dit----dlavs-~~ 243 (1113)
T KOG0644|consen 180 MKNIKRL-LGHRNAVYCAIFDRTGRYIIT----GSDD------RLVKIWSMETARCLASCRGHSGDIT----DLAVS-SN 243 (1113)
T ss_pred HHHHHHH-HhhhhheeeeeeccccceEee----cCcc------ceeeeeeccchhhhccCCCCccccc----hhccc-hh
Confidence 3455666 568888999999999999999 8899 9999999999999998888885533 55665 57
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----CCceeEEEEEcCCCcEEEEEeeC-----CcceeeE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----SSHVPLKILSIEDGTVLKVFYHL-----LHRNKKV 266 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----s~d~tIklWdi~tG~~l~tl~~~-----~~~~~~V 266 (464)
.-.+|++|.|..|+||.+.+|.++..|. ++.|.+|+|+| +.|+|+++||.. -+.+..-.-. ..-+-++
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccc-ccccccCCCCCCcccccceeee
Confidence 7789999999999999999999987765 57899999988 689999999986 2222211100 0112333
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
.|-. .+...+++++|++-+.|....-.| |...+.=+.++-|- ...+++. +--+.+||+ +|.+++.+.||.
T Consensus 323 ~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 323 LFEN-NGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred eccc-cccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 4422 245677889999999987544333 22222222233222 4566777 889999999 899999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.. +.-+-|+|=.-.|+ |++ .||++-|||+-.|--++.. .||.
T Consensus 396 d~-----~yvLd~Hpfn~ri~msag-----------~dgst~iwdi~eg~pik~y~~gh~-------------------- 439 (1113)
T KOG0644|consen 396 DE-----VYVLDVHPFNPRIAMSAG-----------YDGSTIIWDIWEGIPIKHYFIGHG-------------------- 439 (1113)
T ss_pred cc-----eeeeeecCCCcHhhhhcc-----------CCCceEeeecccCCcceeeecccc--------------------
Confidence 98 77899999665554 443 4999999999999877654 4554
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.+..-+||+||+.++...+.|.+.+
T Consensus 440 ---------------kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 440 ---------------KLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ---------------eeeccccCCCCceEecCCCCCceEE
Confidence 4455689999999998888777665
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=164.11 Aligned_cols=239 Identities=12% Similarity=0.160 Sum_probs=181.0
Q ss_pred CCceEEEEEEeeCCCE----EEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee--eccccCceEEEEeCCCCcEE
Q 012410 128 PDEVIRSLFYNKNNDS----LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~----l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~--~~~~~~~~~VaFs~pdGk~L 201 (464)
-++..+.++|.+.|.. ||. |.+| +.|-||+...=..+....+.. ..|.+++-.+.|+.--|.+|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaG----G~ed------G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAG----GLED------GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccccceeeeecccCCCccceeec----cccC------CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 3456788899998887 443 5677 899999964311111111111 12446666899984444499
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEE---------eCCCceeEEEEEcCCCcEEEEEeeCCc--ceeeE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKI---------RSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKV 266 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vaf---------s~s~d~tIklWdi~tG~~l~tl~~~~~--~~~~V 266 (464)
|||+.|++|-|||+++-+.-++.. .+.|-.|++ |.+.++.+-|||+..-+.+-.|..+.. ++..|
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 999999999999999855544442 356777777 346778999999997776666664322 35799
Q ss_pred EEEccCCCeEEEEeCC---CeEEEEECCCC-cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 267 DFIEQFNEKLLVKQEN---ENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D---~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|+|..-.+++++++| -.|++||++.- ..++++++|...|.++.|++.+ .+|+|++ |+.|-+||. +||.|..|
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 9999766777777643 58999999874 4788999999999999999877 8899988 999999999 79999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 340 EDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
.-..+| +..|.|.|-.- +++.+|. ||.|-|..+.++-
T Consensus 293 p~~~nW-----~fdv~w~pr~P~~~A~asf-----------dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNW-----CFDVQWCPRNPSVMAAASF-----------DGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcc-----eeeeeecCCCcchhhhhee-----------ccceeeeeeecCC
Confidence 999999 78899999655 7777776 9999999986543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-13 Score=139.12 Aligned_cols=196 Identities=11% Similarity=0.056 Sum_probs=129.9
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
..+|.+||.. |...+.+. ...+.+.+|+|+ .+..|.+||+.+|+....... ...+..++|+| ++
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g~~~~~~~Sp-DG 259 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RGINGAPSFSP-DG 259 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CCCccCceECC-CC
Confidence 4579999985 44444443 456788888874 234699999999987543222 23456789999 46
Q ss_pred CeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeCC-CceEEEeccCCCC
Q 012410 274 EKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 345 (464)
Q Consensus 274 ~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~~-Ge~l~tl~gH~~~ 345 (464)
.+|+. .+.++ .|.+||+.+|++.+ +..|.....+++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 67765 45554 69999999998755 444544556789999999888777 455 4445663 554 333222222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+++|||||++|+-.+. .+....|.+||+.+|+.. .|. +..
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~--------~~~~~~I~v~d~~~g~~~-~Lt-~~~----------------------- 379 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHG--------SGGQYRIAVMDLSTGSVR-TLT-PGS----------------------- 379 (433)
T ss_pred -----ccCEEECCCCCEEEEEEC--------CCCceeEEEEECCCCCeE-ECC-CCC-----------------------
Confidence 236899999999987653 112347999999888754 442 211
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
...+.+|+|||+.|+..+.+
T Consensus 380 -----------~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 380 -----------LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -----------CCCCceECCCCCEEEEEEec
Confidence 23356899999988877653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=131.09 Aligned_cols=109 Identities=14% Similarity=0.217 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCcEEEEE--e-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 304 MTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~--s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
..|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+ . ++.|+|||+|++||.++. +...
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~wsP~G~~l~~~g~--------~n~~ 124 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWSPDGRFLVLAGF--------GNLN 124 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEECCCCCEEEEEEc--------cCCC
Confidence 469999999999987654 4 78999999999999998643 2 689999999999999985 2235
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-----
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR----- 455 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~----- 455 (464)
|.|.+||+.+.+++.+.. |. .+..++|||||+.|+++..
T Consensus 125 G~l~~wd~~~~~~i~~~~-~~-----------------------------------~~t~~~WsPdGr~~~ta~t~~r~~ 168 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-HS-----------------------------------DATDVEWSPDGRYLATATTSPRLR 168 (194)
T ss_pred cEEEEEECCCCEEeeccc-cC-----------------------------------cEEEEEEcCCCCEEEEEEecccee
Confidence 889999999999998874 32 5678999999999999874
Q ss_pred -CCcEEecc
Q 012410 456 -HGLVHVWS 463 (464)
Q Consensus 456 -DgtVrlWd 463 (464)
|..++||+
T Consensus 169 ~dng~~Iw~ 177 (194)
T PF08662_consen 169 VDNGFKIWS 177 (194)
T ss_pred ccccEEEEE
Confidence 88899996
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=146.52 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=130.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
.++.+++|.+.+.+++++++.|..||||-+..++ .+.+|..|...|..|-|+|+|.+|||++ +++|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5778999988655588889999999999887654 3457899999999999999999999999 99999997
Q ss_pred CC--------C-----c----eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 331 FR--------G-----E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 331 ~~--------G-----e----~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.. + + ..+.+.+|..- +..++++||+.+++++|. |.++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 43 3 1 24588899876 678999999999999998 99999999999999
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++.+.+|.. .|..++++|-.|.++|=|.|+..+
T Consensus 158 ~~~~~dh~~----------------------------------yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHEH----------------------------------YVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeecccccc----------------------------------ccceeecchhhhhhhhhccCcccc
Confidence 999999986 889999999999999999888444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=151.25 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=179.1
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC---cccceeec-cccCceEEEEeCCCC
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS---GFALFESE-SLKWPGFVEFDDVNG 198 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~---~~~l~~~~-~~~~~~~VaFs~pdG 198 (464)
++ .+|.+.|+.+.|.|=--.||+ ++.+ +++++|.++..+... --++++.. |.+.+-+|+.+ ++|
T Consensus 289 tl-~s~~d~ir~l~~~~sep~lit----~sed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TL-RSHDDCIRALAFHPSEPVLIT----ASED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred ee-ecchhhhhhhhcCCCCCeEEE----eccc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 44 789999999999998889999 4566 788888883322211 12444422 22223379996 899
Q ss_pred cEEEEecCCCcEEEEeCC-------CCe---E--EEEecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEee
Q 012410 199 KVLTYSAQDSIYKVFDLK-------NYT---M--LYSISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~-------tg~---~--l~tl~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
+.+-||+.|++|+.|++. .+. + .+..+.+.||.+++|+ +.|+|+++|+...... .+|..
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence 999999999999999543 121 1 1223367899999975 6899999999875554 45542
Q ss_pred C-Ccce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-------CCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 259 L-LHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 259 ~-~~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
. -+.. -+|+|..-..-.+++...-+--.|.|+.+++-+.++..- ...+.-|+..|.+.+..++- |++|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 1 0111 677775421122222333344446677777766655322 13345667789999998988 999999
Q ss_pred EeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 329 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 329 Wd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
.|. +|+++.+...|... |.+++|-|+|-+|+|++. |+.|++|.+..-.|+....+|.
T Consensus 516 ~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 999 79999999999887 889999999999999987 9999999999999998887775
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=143.51 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=140.8
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
..|||+ .||..||+|+.|+++|||+..+-+.+.. +..|...|+.++|
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------------------------e~~~~~eV~DL~F 194 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILE--------------------------------EIAHHAEVKDLDF 194 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhh--------------------------------hHhhcCcccccee
Confidence 389997 8999999999999999999643222111 1112267788889
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-C-CceEEEEEcCCC-----cEEEEEe-CCeEEEEeC---CC----
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-F-MTPSAFIFLYEN-----QLFLTFR-NRTVAVWNF---RG---- 333 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~-~~v~sv~Fspdg-----qllaS~s-D~TIklWd~---~G---- 333 (464)
+|+ +..|++-+.| ..+|||+.+|-+++.+... . ....++-|+-|+ .++++-. -+.|++||. .|
T Consensus 195 S~d-gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 195 SPD-GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred CCC-CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 884 3344445777 9999999999988876632 2 234467799888 5555555 567778775 23
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGS 412 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~ 412 (464)
+.-+-..+|.. +.+++.|+||+++|-|+. ||.|=|.+..+=||++-. ++|..
T Consensus 273 ~~~~~~~~~~s------iSsl~VS~dGkf~AlGT~-----------dGsVai~~~~~lq~~~~vk~aH~~---------- 325 (398)
T KOG0771|consen 273 RLRKKIKRFKS------ISSLAVSDDGKFLALGTM-----------DGSVAIYDAKSLQRLQYVKEAHLG---------- 325 (398)
T ss_pred chhhhhhccCc------ceeEEEcCCCcEEEEecc-----------CCcEEEEEeceeeeeEeehhhhee----------
Confidence 33333334433 789999999999999998 999999999999998877 45765
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
-|+.|.|+||.+.+++-|.|.+++|
T Consensus 326 ------------------------~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 326 ------------------------FVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------------------------eeeeEEEcCCcCcccccccCCceeE
Confidence 8999999999999999999998876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=141.02 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=149.8
Q ss_pred EEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 190 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 190 ~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+|.|- +|+. .||||+.|..||+|-+..+.. + .++..|+ .+.+|.+|...+..|.|
T Consensus 18 s~dfq-~n~~~~laT~G~D~~iriW~v~r~~~-----~----------~~~~~V~--------y~s~Ls~H~~aVN~vRf 73 (434)
T KOG1009|consen 18 SVDFQ-KNSLNKLATAGGDKDIRIWKVNRSEP-----G----------GGDMKVE--------YLSSLSRHTRAVNVVRF 73 (434)
T ss_pred EEEec-cCcccceecccCccceeeeeeeecCC-----C----------CCceeEE--------EeecccCCcceeEEEEE
Confidence 78895 7777 999999999999998765331 1 1222333 34456666678899999
Q ss_pred EccCCCeEEEEeCCCeEEEEECC--------C-----C---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 269 IEQFNEKLLVKQENENLQILDVR--------N-----A---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~--------t-----g---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
+| .++.|++|++++.|-||-.. + . .-.+++++|-..++.++|+||++.+++++ |.++++||+
T Consensus 74 ~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 74 SP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred cC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99 46777778899999999855 3 1 13458899999999999999999999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEE--EEccCCCCCC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLA--KINATNCSPK 405 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---cl~--tl~gh~~~~~ 405 (464)
.|++++.+.+|... |.-+++-|-++++++=|. |...+...+..-+ |+. .+.+-..
T Consensus 153 ~~G~l~~~~~dh~~y-----vqgvawDpl~qyv~s~s~-----------dr~~~~~~~~~~~~~~~~~~~~m~~~~~--- 213 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHY-----VQGVAWDPLNQYVASKSS-----------DRHPEGFSAKLKQVIKRHGLDIMPAKAF--- 213 (434)
T ss_pred ccceeEeeccccccc-----cceeecchhhhhhhhhcc-----------CcccceeeeeeeeeeeeeeeeEeeeccc---
Confidence 69999999999998 889999999999998765 7655665554432 332 1111111
Q ss_pred cccccCCCCCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEee
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGN 454 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs 454 (464)
. ......++....+.|. --.-++|+|||..|++.+
T Consensus 214 ---~-----------~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 214 ---N-----------EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ---C-----------CCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 0 0011112233334444 334589999999999875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=132.22 Aligned_cols=278 Identities=13% Similarity=0.144 Sum_probs=202.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe------ccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i------~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
.+|..-|..+-||.||+.|++ ++|| +.+++|.+ ++-|+++ +.+.-+..-+.+++|+ ....
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~-~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFD-LENR 118 (609)
T ss_pred hhhccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCCce---eccCccccceEEEEEc-cCCe
Confidence 458888999999999999999 8999 99999998 3334432 2222233445589997 6778
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecC----CCEeEEEEeC--------CCceeEEEEEcCCCc-EEEE--EeeCCccee
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIRS--------SSHVPLKILSIEDGT-VLKV--FYHLLHRNK 264 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~----~~V~~Vafs~--------s~d~tIklWdi~tG~-~l~t--l~~~~~~~~ 264 (464)
.|-||..|+||.+-|+++.+-|+.+.. +.|+.+..+| +.++-|-+||+...+ ...- +......-.
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 899999999999999999999988762 3577777766 467889999997654 1111 111112337
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EE-----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 335 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~-----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~ 335 (464)
++-|.|..+..||+.++-+-+-+||++--+- ++ -|..+...-.++.|+|.|..|++-. -..--++|+. -.|
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 8999997667777788889999999876542 11 2222221123577999999999988 6666788994 455
Q ss_pred EEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-----------------------
Q 012410 336 VTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------------------- 390 (464)
Q Consensus 336 l~tl~gH~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t----------------------- 390 (464)
-.--.+|.. +..-|.+.+++|-.|-. ++|||+ +=-|.||.|..
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 443345443 54556678888887655 889987 88899998742
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+-+..|+||.+ -+..|-|+|-...|+|.+-...+|||.
T Consensus 347 ~~~~~VLrGHRS----------------------------------v~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 347 EKELTVLRGHRS----------------------------------VPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cceeEEEecccc----------------------------------cccceeecCCcceEeccchhhheeccc
Confidence 124556777765 677899999999999999999999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=145.25 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=154.8
Q ss_pred eeEEEEEe-ccCCCC-CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC
Q 012410 161 RSTKIEYI-RRGKPD-SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS 238 (464)
Q Consensus 161 ~ti~l~~i-~~G~~~-~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~ 238 (464)
..|-|.++ +-|++- +..+.+..+ .-+..+.+++-|.+.||-+..|+.|+||.+..+-+-..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ng--t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------- 665 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNG--TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------- 665 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccC--ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------------
Confidence 67888887 566663 223333222 11225777777889999999999999999875443110
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
+-+.-+.|+.|+..+.++.|.|.-.+-|++++.|-||+|||+++++..-.|.||++.+..+||||||+++
T Consensus 666 ----------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 666 ----------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred ----------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 1122233444456677788888666777889999999999999999999999999999999999999999
Q ss_pred EEEe-CCeEEEEeCC-Cc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeE
Q 012410 319 LTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKC 393 (464)
Q Consensus 319 aS~s-D~TIklWd~~-Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G~c 393 (464)
||-+ |++|++++-+ ++ .++.=.|-..-. ---|.|-=||.+|+..+.. .++...|-++|.++ +.-
T Consensus 736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR----gARi~wacdgr~viv~Gfd-------k~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQPVYEGKGPVGTR----GARILWACDGRIVIVVGFD-------KSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred eeeecCceEEEeCCCCCCCccccCCCCccCc----ceeEEEEecCcEEEEeccc-------ccchhhhhhhhhhhccCCc
Confidence 9999 9999999983 43 333222222210 1235566689988877761 22356677887643 333
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEeeCCCcEEecc
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWS 463 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~-LaSgs~DgtVrlWd 463 (464)
|.+.--... | .+.--.|++|.+. ++||-.|.+|.++.
T Consensus 805 l~t~~lDva-p--------------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 805 LYTQVLDVA-P--------------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ceeeeeccc-C--------------------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 333211100 0 1112368888876 56888899988764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=126.33 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=139.6
Q ss_pred cEEEEecCCCc--EEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcCCCcEEEEEeeC-CcceeeEEEE
Q 012410 199 KVLTYSAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIEDGTVLKVFYHL-LHRNKKVDFI 269 (464)
Q Consensus 199 k~LaSgs~D~t--iKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~tG~~l~tl~~~-~~~~~~V~F~ 269 (464)
.+||--+.++. .|+-+.+.++-+-.+. ...|.+|++.-. -...|.|.||.+=+.|+|++.. .+...-.||+
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 35554444544 8888888776553333 467888888642 1123999999999999998843 2344567887
Q ss_pred ccCCCeEEE--Ee-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe-EEEEeC-CCceEEEeccCC
Q 012410 270 EQFNEKLLV--KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT-VAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 270 ~~~~~~lla--~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T-IklWd~-~Ge~l~tl~gH~ 343 (464)
+..++-.++ ++ .-|.|.|||+.+-+...++..|...+-+++|+|||.+|||+| .|| |||..+ +|+.+..|.--.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 754344444 55 679999999999999999999999999999999999999999 665 699999 799999998765
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
.. +++.+++|+||+++|++.|. -+||.|+.+.+-
T Consensus 217 ~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 217 YP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred ee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 54 56999999999999998875 899999988653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-12 Score=132.65 Aligned_cols=197 Identities=11% Similarity=0.006 Sum_probs=133.9
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
...|.+||...+.. +.+. ...|.+.+|||+ .+..|.+||+++|+... +......+..++|+| ++
T Consensus 181 ~~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG 257 (435)
T PRK05137 181 IKRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSP-DG 257 (435)
T ss_pred ceEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECC-CC
Confidence 45788889755443 3333 567999999885 23579999999998743 333334567889999 46
Q ss_pred CeEEE-EeCCCe--EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeCCCceEEEeccCCCCc
Q 012410 274 EKLLV-KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 346 (464)
Q Consensus 274 ~~lla-~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~~Ge~l~tl~gH~~~~ 346 (464)
.+|+. .+.|+. |.+||+.++++.+ +..+........|+|||+.|+..+ ++ .|-+||.+|..++.+..+...
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~- 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR- 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-
Confidence 67765 456655 6677999998755 444555566789999999888766 33 577778865555555544333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
+....|||||+.||..+. .+.+..|.+||+.+ ...+.+.. ..
T Consensus 336 ----~~~~~~SpdG~~ia~~~~--------~~~~~~i~~~d~~~-~~~~~lt~-~~------------------------ 377 (435)
T PRK05137 336 ----YSTPVWSPRGDLIAFTKQ--------GGGQFSIGVMKPDG-SGERILTS-GF------------------------ 377 (435)
T ss_pred ----ccCeEECCCCCEEEEEEc--------CCCceEEEEEECCC-CceEeccC-CC------------------------
Confidence 456889999999987764 11245788999744 44444421 11
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.+.++.|||||+.|+-.+.+
T Consensus 378 ----------~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 378 ----------LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ----------CCCCCeECCCCCEEEEEEcc
Confidence 34567899999998765543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=138.01 Aligned_cols=249 Identities=11% Similarity=0.068 Sum_probs=176.0
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec------CCCEeEEE
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIK 233 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~------~~~V~~Va 233 (464)
.+.||++..- . .-...+.. ..-+-.++|++-+..+||.|..+|.|=|||+..+.. ...++ ...|..|.
T Consensus 223 ~~~vW~~~~p-~-~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNP-N-TPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCC-C-CceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 6788887543 1 11112222 122337999988899999999999999999987665 22222 24455555
Q ss_pred E----------eCCCceeEEEEEcCC------CcEEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEE---E
Q 012410 234 I----------RSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI---L 288 (464)
Q Consensus 234 f----------s~s~d~tIklWdi~t------G~~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkI---W 288 (464)
. |.+.|+.|+.|++.. +.++.+.. ...+.+..++|.+-++..+++|.++|.|.- +
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 4 235899999998753 22333333 123456899999977788999999999975 3
Q ss_pred ECCCCc-----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCC
Q 012410 289 DVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQ 360 (464)
Q Consensus 289 Dv~tg~-----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg 360 (464)
+.+.+. .+.+...|-+.|+++-|+|-+..+..++ |-|||||.- .-..+..+..|... |.++++||--
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEcCcC
Confidence 433333 2336677889999999999998777766 999999985 35677788888877 7899999976
Q ss_pred C-EEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 361 D-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 361 ~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
- .+|++.. ||.|.|||+..-.+ +.+.+-+. ..
T Consensus 454 pavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~----------------------------------~~ 488 (555)
T KOG1587|consen 454 PAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS----------------------------------PA 488 (555)
T ss_pred ceEEEEEcC-----------CCceehhhhhccccCCcccccccc----------------------------------cc
Confidence 4 4455543 99999999865332 22222221 15
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..-+.++|+|+.|+.|...|++++|+.
T Consensus 489 l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 489 LTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred cceeecCCCCcEEEEecCCCcEEEEEc
Confidence 567899999999999999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=128.94 Aligned_cols=219 Identities=18% Similarity=0.178 Sum_probs=151.6
Q ss_pred eEEeeecccc---------cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 109 VCAAFSRETN---------RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 109 ~~~~~~~~~g---------~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
-.++|++... ++++.|...+-..|.+|-|.||++.||++- + ..|-+|++..+.-.. ..+
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-----d------n~i~l~~l~ess~~v-aev 161 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-----D------NNIVLWSLDESSKIV-AEV 161 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-----c------CceEEEEcccCcchh-eee
Confidence 4677875543 245556433445789999999999999932 3 588899987776521 011
Q ss_pred eeecccc---CceEEEEeC-CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 180 FESESLK---WPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 180 ~~~~~~~---~~~~VaFs~-pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
...+... +-.+-++|+ -||..+++ ..|+|+..||+.|-++.+. |++
T Consensus 162 ~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~s-----------------------I~d------ 211 (370)
T KOG1007|consen 162 LSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNS-----------------------IED------ 211 (370)
T ss_pred cccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcc-----------------------hhh------
Confidence 1111111 111455653 47877775 4688898998877555333 332
Q ss_pred EeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeC
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~ 331 (464)
-|.++++.++|.|. -+.+|+ +++|+.|||||.+. ...++.+.+|..+||+|.|.|. .|+++|++ |..|-||..
T Consensus 212 --AHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 212 --AHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred --hhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 23477888888884 355555 68999999999887 4578999999999999999975 68899998 999999973
Q ss_pred ---CC---------------------------ceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCC
Q 012410 332 ---RG---------------------------ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 332 ---~G---------------------------e~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~D 380 (464)
.. ..+.+++.|... |..+++|. |-=++||-|. |
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsadPWiFASLSY-----------D 352 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSADPWIFASLSY-----------D 352 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccCCCeeEEEecc-----------C
Confidence 11 125588889887 88899987 4445666665 9
Q ss_pred CeEEEEeC
Q 012410 381 GSINVSSI 388 (464)
Q Consensus 381 gtIklWdi 388 (464)
|.+-|-.+
T Consensus 353 GRviIs~V 360 (370)
T KOG1007|consen 353 GRVIISSV 360 (370)
T ss_pred ceEEeecC
Confidence 98888765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=152.80 Aligned_cols=266 Identities=12% Similarity=0.122 Sum_probs=193.0
Q ss_pred CCccccccchhhhhhccccceeeeecCCCCCcccchhhhccccceEEEEec--c----ceeehhccCCeEEeeeccc---
Q 012410 47 RDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--R----DIVFALAHSGVCAAFSRET--- 117 (464)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g----~~l~~l~~~g~~~~~~~~~--- 117 (464)
-+.+|++...-|.|+ +|--|++..++. -..+.......+.... | -+||.+.+||.|-+|+...
T Consensus 31 ~D~sfst~~slEife-------ld~~~~~~dlk~-~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~ 102 (1049)
T KOG0307|consen 31 FDASFSTSASLEIFE-------LDFSDESSDLKP-VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA 102 (1049)
T ss_pred cccccccccccceee-------ecccCccccccc-cccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc
Confidence 345565555555543 243444433333 1222333344444433 2 2699999999999998554
Q ss_pred c---cEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEE
Q 012410 118 N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEF 193 (464)
Q Consensus 118 g---~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaF 193 (464)
| ..|.+++. |..-|+.+-||++.. .||+ |.++ ..|-|||+..=+.-.+.. ......-+-+|++
T Consensus 103 ~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLAS----Ga~~------geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 103 NASEEVLATKSK-HTGPVLGLDFNPFQGNLLAS----GADD------GEILIWDLNKPETPFTPG--SQAPPSEIKCLSW 169 (1049)
T ss_pred CcchHHHhhhcc-cCCceeeeeccccCCceeec----cCCC------CcEEEeccCCcCCCCCCC--CCCCcccceEecc
Confidence 2 25666755 777899999999977 8888 7777 899999986533321111 1001112226777
Q ss_pred eCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----CCEeEEEEeCC------------CceeEEEEEcC-CCcEEEEE
Q 012410 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIRSS------------SHVPLKILSIE-DGTVLKVF 256 (464)
Q Consensus 194 s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----~~V~~Vafs~s------------~d~tIklWdi~-tG~~l~tl 256 (464)
+--...+|||++.++.+-||||+.-+.+-.+++ -.+..|+++|+ ..-.|++||+. .-..++++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 766678999999999999999998776655542 34778999873 22479999965 45678899
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCC
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 333 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~G 333 (464)
++|...+-++++.++|+..+|+++.|+.|-+||..|||-+-.+....+|+..|-|.|..- +||.++ ||.|.|..+.|
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 988888999999998878888899999999999999999999998889999999999887 888888 99999999853
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=128.31 Aligned_cols=244 Identities=11% Similarity=0.135 Sum_probs=146.8
Q ss_pred EEEeccceeehhccCC------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAHSG------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+++...+++...... .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|.. ... ..+.++
T Consensus 158 ~g~f~~~ia~v~~~~~~~~~~~~l~~~d-~~g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~-~~~------~~l~~~ 228 (430)
T PRK00178 158 KGAFSTRILYVTAERFSVNTRYTLQRSD-YDGARAVTLLQ-SREPILSPRWSPDGKRIAYVSFE-QKR------PRIFVQ 228 (430)
T ss_pred CccceeeEEEEEeeCCCCCcceEEEEEC-CCCCCceEEec-CCCceeeeeECCCCCEEEEEEcC-CCC------CEEEEE
Confidence 4566666666543322 355556 45666666633 56678999999999999886521 122 478889
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. ++... -++....+|| |||+.|+.. +.++. ..|.+|
T Consensus 229 ~l~~g~~~---~l~~~--~g~~~~~~~S-pDG~~la~~~~~~g~------------------------------~~Iy~~ 272 (430)
T PRK00178 229 NLDTGRRE---QITNF--EGLNGAPAWS-PDGSKLAFVLSKDGN------------------------------PEIYVM 272 (430)
T ss_pred ECCCCCEE---EccCC--CCCcCCeEEC-CCCCEEEEEEccCCC------------------------------ceEEEE
Confidence 99888752 12211 1334468997 899988854 33331 123344
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC--CeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D--~tIkIWDv~tg~~l~~l-~gh~~~v~sv~FspdgqllaS~ 321 (464)
|+++|+..+ +..+......+.|+| ++.+|+..+ .+ ..|.++|+.+|+..+.. .++ ......|||||+.|+-.
T Consensus 273 d~~~~~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~--~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 273 DLASRQLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN--YNARPRLSADGKTLVMV 348 (430)
T ss_pred ECCCCCeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEE
Confidence 444443322 221112335567777 456666655 33 46777898899865543 232 23356799999999877
Q ss_pred e--CC--eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R--NR--TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s--D~--TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ ++ .|.+||+ +|+. +.+.. ... ..+..|||||+.|+-.+.. +....|.+.++ +|+..+.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~-~g~~~~~ 412 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSI-NGRVRLP 412 (430)
T ss_pred EccCCceEEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEE
Confidence 6 33 5788998 4654 44432 222 2256899999999887651 12355778886 6666666
Q ss_pred EccCC
Q 012410 397 INATN 401 (464)
Q Consensus 397 l~gh~ 401 (464)
|..+.
T Consensus 413 l~~~~ 417 (430)
T PRK00178 413 LPTAQ 417 (430)
T ss_pred CcCCC
Confidence 65443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=132.83 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=128.6
Q ss_pred CcEEEEeCCCCeEEEEec--CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
..+.+||. +|.....+. ...+.+.+|||++ ...|.+||+.+|+.... ......+..++|+| ++.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SP-DG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSP-DGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC-CCC
Confidence 35666676 455444333 4568888888842 23599999999987543 22223456899999 466
Q ss_pred eEEE-EeCCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC--CCceEE--EeccCCCC
Q 012410 275 KLLV-KQENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVT--SFEDHLLW 345 (464)
Q Consensus 275 ~lla-~s~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~--~Ge~l~--tl~gH~~~ 345 (464)
+|+. .+.|+..+|| |+.+++ ++.+..|.....+..|||||+.|+..+ ++...||.+ .|...+ ++.++.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 7765 5678887776 455565 444555555566788999999888666 567888865 333333 344432
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+.+|||||++||..+. .+.+..|.+||+.+|+.. .+..+.
T Consensus 330 -----~~~~~~SpDG~~Ia~~s~--------~~g~~~I~v~d~~~g~~~-~lt~~~------------------------ 371 (427)
T PRK02889 330 -----NTSPRISPDGKLLAYISR--------VGGAFKLYVQDLATGQVT-ALTDTT------------------------ 371 (427)
T ss_pred -----cCceEECCCCCEEEEEEc--------cCCcEEEEEEECCCCCeE-EccCCC------------------------
Confidence 235789999999997764 112347999999888754 343221
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
...++.|+|||+.|+.++.++
T Consensus 372 -----------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -----------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----------CccCceECCCCCEEEEEEecC
Confidence 234678999999988877654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=131.55 Aligned_cols=156 Identities=15% Similarity=0.300 Sum_probs=124.7
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..++.|++- |..|++|..||.|-|||+.|...-+++.+|...|.+++||+||+.|+|+| |..|++||+ .|.|++.+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 578889884 55666688999999999999998899999999999999999999999999 999999999 699877554
Q ss_pred cCCC-----CcC----CC------------------------------C--eeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 341 DHLL-----WHP----DC------------------------------N--TNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 341 gH~~-----~~~----~~------------------------------~--v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
=... ||| .| + -....|.+-|++|++|-.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----------- 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----------- 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC-----------
Confidence 1110 000 00 0 001236666788887764
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.|.+-+.|..|-+|++.++--+- +.|.++-|+..|..|+.-..|++|
T Consensus 174 KGkllv~~a~t~e~vas~rits~---------------------------------~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSV---------------------------------QAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred cceEEEEecchheeeeeeeechh---------------------------------eeeeEEEEeccCcEEEEecCCceE
Confidence 79999999999999998866541 278899999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
|.++
T Consensus 221 R~ye 224 (405)
T KOG1273|consen 221 RTYE 224 (405)
T ss_pred EEEe
Confidence 9986
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=130.80 Aligned_cols=245 Identities=10% Similarity=0.096 Sum_probs=146.4
Q ss_pred EEEeccceeehhccCC-----eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 93 EIVAARDIVFALAHSG-----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g-----~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
.++|...+.+.....+ .+.+.| .+|.....+.. +.+.+.+..|||||+.|+.++.. ... ..+.+++
T Consensus 178 ~g~f~~riayv~~~~~~~~~~~l~i~d-~dG~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~-~g~------~~L~~~d 248 (448)
T PRK04792 178 RGAFLTRIAYVVVNDKDKYPYQLMIAD-YDGYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFE-NRK------AEIFVQD 248 (448)
T ss_pred CccccCEEEEEEeeCCCCCceEEEEEe-CCCCCceEeec-CCCcccCceECCCCCEEEEEEec-CCC------cEEEEEE
Confidence 3555555555443333 344445 45655555533 55678899999999999886622 112 4688889
Q ss_pred eccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEE
Q 012410 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILS 246 (464)
Q Consensus 168 i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWd 246 (464)
+.+|+.. ++... -+.....+|| |||+.|+.. +.++.. .|.++|
T Consensus 249 l~tg~~~---~lt~~--~g~~~~~~wS-PDG~~La~~~~~~g~~------------------------------~Iy~~d 292 (448)
T PRK04792 249 IYTQVRE---KVTSF--PGINGAPRFS-PDGKKLALVLSKDGQP------------------------------EIYVVD 292 (448)
T ss_pred CCCCCeE---EecCC--CCCcCCeeEC-CCCCEEEEEEeCCCCe------------------------------EEEEEE
Confidence 8888752 12111 1233478997 899988864 334321 234445
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s 322 (464)
+++|+..+ +..+......++|+| ++.+|+..+ .++ .|.++|+.+|+..+. ..++. ..+.+|+|||+.|+-.+
T Consensus 293 l~tg~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~--~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 293 IATKALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ--NLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCCeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC--CcCeeECCCCCEEEEEE
Confidence 55554322 222113345677877 456666654 333 566678888886554 33332 34568999999987766
Q ss_pred --CCeEEE--EeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 323 --NRTVAV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 323 --D~TIkl--Wd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++..+| +|+. |+. +.+.... + ..+..|+|||+.|+-.+.. +....+.+++. +|+..+.+
T Consensus 369 ~~~g~~~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~--------~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTY--------QGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred ecCCceEEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEEC
Confidence 454455 6774 654 4444331 2 2345799999999876641 11345788886 88888888
Q ss_pred ccCCC
Q 012410 398 NATNC 402 (464)
Q Consensus 398 ~gh~~ 402 (464)
..+..
T Consensus 433 ~~~~g 437 (448)
T PRK04792 433 PAGQG 437 (448)
T ss_pred cCCCC
Confidence 66543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=117.96 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=107.0
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcc-cceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCcEEE--EecCCC
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSS-LKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDS 208 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~-L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La--Sgs~D~ 208 (464)
-.+.++|.|+.|++...-..+. +. -.-....|+.++. +.......+-. -+.+..|+|+ |+|+.+| +|..+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~-~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~Ws-P~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDK-SGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWS-PNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeecc-CcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEEC-cCCCEEEEEEccCCc
Confidence 3578889998888744211111 10 0013456666632 23222222222 1335589997 8999864 455677
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENL 285 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tI 285 (464)
+|.|||++ ++.++++.. .....|.|+|. |..++.++ ..|.|
T Consensus 84 ~v~lyd~~-~~~i~~~~~----------------------------------~~~n~i~wsP~-G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFGT----------------------------------QPRNTISWSPD-GRFLVLAGFGNLNGDL 127 (194)
T ss_pred ccEEEcCc-ccEeEeecC----------------------------------CCceEEEECCC-CCEEEEEEccCCCcEE
Confidence 88888874 444444432 23345667663 45666665 34779
Q ss_pred EEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-------CCeEEEEeCCCceEEEec
Q 012410 286 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 340 (464)
Q Consensus 286 kIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-------D~TIklWd~~Ge~l~tl~ 340 (464)
++||+++.+++...... .+..++|||||+.|+++. |..++||+++|+++....
T Consensus 128 ~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 128 EFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 99999999999887643 367899999999999974 689999999999987553
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=120.44 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=140.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe---ccCC--CCCccccee-eccccCceEEEEeCCCCcEEEEec
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI---RRGK--PDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i---~~G~--~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
|.+-+.+|-+++|+..+.|+ ++-+-.+ ..|. ..+..+.+. ..+-+.+..++|. | ..|.||+
T Consensus 13 vf~qa~sp~~~~l~agn~~G----------~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d-~~Lls~g 79 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFG----------DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--D-DFLLSGG 79 (325)
T ss_pred HHHHhhCCcceEEEEecCCC----------eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--h-hheeecc
Confidence 44556677777777755333 3333333 1111 111123333 2233555589996 3 4777765
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeE
Q 012410 206 QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 285 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tI 285 (464)
|+.||=|.-+ +++.++..+..|++..+-- +| .++ ...+...-..|+.|. ++.++.|+.|
T Consensus 80 -dG~V~gw~W~--E~~es~~~K~lwe~~~P~~-----------~~----~~e--vPeINam~ldP~enS-i~~AgGD~~~ 138 (325)
T KOG0649|consen 80 -DGLVYGWEWN--EEEESLATKRLWEVKIPMQ-----------VD----AVE--VPEINAMWLDPSENS-ILFAGGDGVI 138 (325)
T ss_pred -CceEEEeeeh--hhhhhccchhhhhhcCccc-----------cC----ccc--CCccceeEeccCCCc-EEEecCCeEE
Confidence 5999999754 2333344455555554321 11 000 134455555565444 4444489999
Q ss_pred EEEECCCCcEEEEcccCCCceEEEEE-cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC---CcCCCCeeEEEECCC
Q 012410 286 QILDVRNAELMEVSRTEFMTPSAFIF-LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL---WHPDCNTNNIYITSD 359 (464)
Q Consensus 286 kIWDv~tg~~l~~l~gh~~~v~sv~F-spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~---~~~~~~v~svafSpD 359 (464)
.-||+++|+..++++||++.+-+++- +..+| ++||+ |||+||||. +++|+++++-..+ -.|+-.-|--|.--|
T Consensus 139 y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 139 YQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN 217 (325)
T ss_pred EEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc
Confidence 99999999999999999999999998 55565 66888 999999999 7999999884332 111111234556667
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+.|++|. -..+-||++.+-+|..+|
T Consensus 218 edWlvCGg------------Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 218 EDWLVCGG------------GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred CceEEecC------------CCceeEEeccCCCceEEE
Confidence 88999886 467889999998887776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-11 Score=126.75 Aligned_cols=248 Identities=10% Similarity=0.097 Sum_probs=145.2
Q ss_pred EEEEeccceeehhccCC--------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEE--EEeecCCCCccccee
Q 012410 92 IEIVAARDIVFALAHSG--------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT--VSVYASDNFSSLKCR 161 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g--------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~s--vSa~~sddfs~L~~~ 161 (464)
..+++...++++...-+ .+.+.| .+|.....|.. ..+.+.+=.|||||+.++. +| +.... .
T Consensus 141 ~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d-~dG~~~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S-~~~g~------~ 211 (428)
T PRK01029 141 VPGISSGKIIFSLSTTNSDTELKQGELWSVD-YDGQNLRPLTQ-EHSLSITPTWMHIGSGFPYLYVS-YKLGV------P 211 (428)
T ss_pred CCccccCEEEEEEeeCCcccccccceEEEEc-CCCCCceEccc-CCCCcccceEccCCCceEEEEEE-ccCCC------c
Confidence 34566566666654322 344444 34555555644 3455778899999987554 33 22222 4
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCce
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHV 240 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~ 240 (464)
++.+.++..|+.. ++-. .-+.....+|| |||+.||..+.. +.. +.
T Consensus 212 ~I~~~~l~~g~~~---~lt~--~~g~~~~p~wS-PDG~~Laf~s~~~g~~----------------------------di 257 (428)
T PRK01029 212 KIFLGSLENPAGK---KILA--LQGNQLMPTFS-PRKKLLAFISDRYGNP----------------------------DL 257 (428)
T ss_pred eEEEEECCCCCce---Eeec--CCCCccceEEC-CCCCEEEEEECCCCCc----------------------------ce
Confidence 7778888877652 1111 11333368897 999999976531 110 11
Q ss_pred eEEEEEcCC---CcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEEC--CC-CcEEEEcccCCCceEEEEEcC
Q 012410 241 PLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 241 tIklWdi~t---G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~t-g~~l~~l~gh~~~v~sv~Fsp 313 (464)
.+.+|++.+ |+..+.+.+.......++|+| ++.+|+..+ .++..+||.+ .. +...+.+..+...+....|||
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 122333332 222222222112335678888 456677655 5776677643 32 333444554545667888999
Q ss_pred CCcEEEEEe-C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 314 ENQLFLTFR-N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 314 dgqllaS~s-D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
||+.|+..+ + ..|.+||+ +|++. .+...... +.+..|+|||+.|+-.+. ......|.+||+
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl 402 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISL 402 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEEC
Confidence 999988765 2 37999999 56654 44433222 567899999998875432 123578999999
Q ss_pred CCCeEEEEE
Q 012410 389 LTGKCLAKI 397 (464)
Q Consensus 389 ~tG~cl~tl 397 (464)
.+|+.....
T Consensus 403 ~~g~~~~Lt 411 (428)
T PRK01029 403 ITKKTRKIV 411 (428)
T ss_pred CCCCEEEee
Confidence 888765444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-11 Score=123.19 Aligned_cols=194 Identities=11% Similarity=0.107 Sum_probs=129.7
Q ss_pred ceEEEEeCCCCcEEEEecCC---CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------CceeEEEEEcCCCcE
Q 012410 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SHVPLKILSIEDGTV 252 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D---~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d~tIklWdi~tG~~ 252 (464)
..+.+|| |||+.||+.+.+ .+|.+||+.+|+...... ...+..++|+|+ ....|.+||+.+|+.
T Consensus 192 ~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 192 ILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred eecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 3478897 899999998764 489999999987543222 344566777774 234588999998865
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC---e
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---T 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~---T 325 (464)
.+ +..+......++|+| ++.+|+..+ .++ .|.++|+.+++.... ..+...+..++|+|||++|+..+ +. .
T Consensus 271 ~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 271 TR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred EE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 44 332223345778888 566777665 333 678889888876543 33445667788999999999888 65 7
Q ss_pred EEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 326 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 326 IklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|.+||+.+...+.+..+.. .....|+|||+.|+..+.. +....+.+.+ .+|+....+..+
T Consensus 348 i~~~d~~~~~~~~l~~~~~------~~~p~~spdg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 348 IAVMDLDGGGERVLTDTGL------DESPSFAPNGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred EEEEeCCCCCeEEccCCCC------CCCceECCCCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 8999984333344443321 2356899999999888751 1123466666 467766666443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-11 Score=131.02 Aligned_cols=312 Identities=10% Similarity=0.111 Sum_probs=197.1
Q ss_pred ccceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--
Q 012410 97 ARDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-- 171 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G-- 171 (464)
.|++.. ..++.-+..|.+..+. .....+..|...+.++++||++.++|+ +..+ +.|.+|. .-|
T Consensus 171 ~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa----~d~d------GrI~vw~-d~~~~ 238 (792)
T KOG1963|consen 171 SGEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA----GDSD------GRILVWR-DFGSS 238 (792)
T ss_pred CceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE----eccC------CcEEEEe-ccccc
Confidence 355543 3444456666666543 122244556767899999999999988 3333 3488886 334
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Ccee
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVP 241 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~t 241 (464)
+-..+..++.. |-.-+++++|+ +||-+|.||+..+-.-+|.+.|++ -+-|+ +..|..+.+||+ .|..
T Consensus 239 ~~~~t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 239 DDSETCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccccceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 11112222221 11224589998 899999999999999999999998 33344 678999999985 5677
Q ss_pred EEEEEcCCCcEEEEEeeCCcc-----------eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---c-------
Q 012410 242 LKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---R------- 300 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~-----------~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~------- 300 (464)
|.|....+=+...+..|.... ..-|.+.|. .+.++--+.-++||++|+.+-+.+..+ .
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 788777666666666543222 134555562 356666789999999999997754322 1
Q ss_pred -cCCCceEEEEEcCCCcEEEEEe---------CC--eEEEEeCCCceEE-Eec-cCCCCcCCCCeeEEEECCCCC-EEEE
Q 012410 301 -TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGELVT-SFE-DHLLWHPDCNTNNIYITSDQD-LIIS 365 (464)
Q Consensus 301 -gh~~~v~sv~FspdgqllaS~s---------D~--TIklWd~~Ge~l~-tl~-gH~~~~~~~~v~svafSpDg~-~LaS 365 (464)
-+...+.+++++-.|+.++|.- |+ .+|.|-..+.... .|. .=..+|.+|-|-.+.++|-.. ..++
T Consensus 395 ~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 395 VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 1234578889998899999853 33 4688876433211 111 112234444455555555555 6777
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc---ccccCEEEEE
Q 012410 366 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG---EALEDITSLF 442 (464)
Q Consensus 366 gs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~V~sla 442 (464)
++. ||.+|||-+..-+-+ ++...+|.-+. .+-..+.+++
T Consensus 475 a~~-----------dg~~KiW~~~~~~n~---------------------------~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 475 ASV-----------DGDFKIWVFTDDSNI---------------------------YKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred ecc-----------CCeEEEEEEeccccc---------------------------CcCccceEEeeeeccccCcccchh
Confidence 765 999999976321111 11111111111 2223789999
Q ss_pred EcCCCCEEEEeeCCCcEEecc
Q 012410 443 YDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd 463 (464)
||.|| .|.+.|.|++|.+||
T Consensus 517 fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 517 FSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred hcCCC-cEEEEecCCEEEEec
Confidence 99999 566678899999998
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-11 Score=132.87 Aligned_cols=259 Identities=14% Similarity=0.125 Sum_probs=175.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC---cEEEEecCCC
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG---KVLTYSAQDS 208 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG---k~LaSgs~D~ 208 (464)
-.--.||+|++.+.. ..++ +++|....||++...+..++.. .-++.+. |.. -++..++.||
T Consensus 19 ~~~avfSnD~k~l~~----~~~~-------~V~VyS~~Tg~~i~~l~~~~a~----l~s~~~~-~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFL----CTGN-------FVKVYSTATGECITSLEDHTAP----LTSVIVL-PSSENANYLIVCSLDG 82 (792)
T ss_pred ecccccccCCcEEEE----eeCC-------EEEEEecchHhhhhhcccccCc----cceeeec-CCCccceEEEEEecCc
Confidence 344568999999988 4444 9999999999997655544432 2267775 333 3566899999
Q ss_pred cEEEEeCCCCeEEEEec-CCCEeEEEEeC---CCceeEEEEEcCCCcEEEEEeeC----------------------Ccc
Q 012410 209 IYKVFDLKNYTMLYSIS-DKHVQEIKIRS---SSHVPLKILSIEDGTVLKVFYHL----------------------LHR 262 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~Vafs~---s~d~tIklWdi~tG~~l~tl~~~----------------------~~~ 262 (464)
+|++||-..+.+++++. +-.|....+.| +.+.-+.+| .++-..+.++..+ .+.
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s-~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~ 161 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS-VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ 161 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee-cccceeeeecccccccceeeeEeeeccccchhhhhhhc
Confidence 99999999999999987 44566665544 111111111 1111111111100 000
Q ss_pred -eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCC--
Q 012410 263 -NKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-- 333 (464)
Q Consensus 263 -~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~G-- 333 (464)
-+.|.+.+- +.+..--.+..+.+|++.++. .. .-..|+.....++|||.++.+|++- ||.|.+|.--|
T Consensus 162 ~~~~I~~~~~--ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 162 EPKSIVDNNS--GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred CCccEEEcCC--ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence 134444331 233333356678899998866 22 2245666678999999999999999 99999997433
Q ss_pred ---ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 334 ---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 334 ---e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+--+.|.=|... |++++||+||.+|.||+. .|-+-+|.+.|++ ++|-+--+
T Consensus 239 ~~~~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg-------- 292 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG-------- 292 (792)
T ss_pred cccccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC--------
Confidence 223455555544 899999999999999987 8999999999988 44422111
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
..|..+.+|||+..-+..-+|..|+|
T Consensus 293 -------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 -------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred -------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 17999999999999888889999887
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-11 Score=122.11 Aligned_cols=299 Identities=13% Similarity=0.119 Sum_probs=186.4
Q ss_pred ccee-ehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIV-FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l-~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+|++ .+...+|.+.+.|..+++.+..+..+. ..--++.|+|||+++.+++ . | ..+.++|+.+++..+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~---r-d------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVAN---R-D------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEE---T-T------SEEEEEETTSSSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEc---C-C------CeEEEEECCcccEEEE
Confidence 4555 467778999999999999999996643 4456688999999998854 2 3 4789999999997654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecC---------CCEeEEEEeCCCc-------
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKIRSSSH------- 239 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~---------~~V~~Vafs~s~d------- 239 (464)
.+ .+ ..|..+++| +||++|+.+. .++++.|+|.+|.+.+++++. ..|..|..+|...
T Consensus 74 i~---~G--~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 74 IK---VG--GNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp EE----S--SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred Ee---cC--CCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 32 12 446689998 8999988665 589999999999999998863 2566777776433
Q ss_pred --eeEEEEEcCCCcEEE--EEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEccc----CCC------
Q 012410 240 --VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT----EFM------ 304 (464)
Q Consensus 240 --~tIklWdi~tG~~l~--tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~g----h~~------ 304 (464)
..|-+-|..+.+.+. ++. ....-....|.| ++.+++++ ..+..|-++|.++++.+..+.. |..
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p 225 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP 225 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE
T ss_pred cCCeEEEEEeccccccceeeec-ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccccccccccc
Confidence 334444666555443 222 112235677777 45566665 4677999999999987765421 222
Q ss_pred -----ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 305 -----TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 305 -----~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
.+|+. +-.+...++.- ...+.+||. ..+.+++++..... --+.-+||+++|...... .
T Consensus 226 hp~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~ 290 (369)
T PF02239_consen 226 HPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------N 290 (369)
T ss_dssp ETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------
T ss_pred CCCcceEEee--ccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------C
Confidence 22322 22333333333 557778998 69999999876554 247779999999987321 1
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
...++|-++|.+|-+-+++|..... ..+.-+.|+|||.+++-...|+
T Consensus 291 ~~~~~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 291 PDADTVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SSHT-EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--
T ss_pred CCCceEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecC
Confidence 2268999999999988888854331 1477899999999877655433
Q ss_pred --cEEecc
Q 012410 458 --LVHVWS 463 (464)
Q Consensus 458 --tVrlWd 463 (464)
.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 588876
|
... |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-13 Score=148.58 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=167.3
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEe
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+.+++|+ -.|.++.+|+.|.-+|||.++|+.|+.++. ...|..+|.+ .+.|.-|++|-+.+|..+..|.
T Consensus 193 Vyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 193 VYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred eeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 3467996 899999999999999999999999999887 3568888885 3799999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
+|++.|.+++|+|. .++|.|||+++||.+ -+.+... -....-+-++.|-..+.-++|++ |++-+.|.+
T Consensus 272 ghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred ccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 98899999999994 267899999999987 2322221 12335677788999999999999 999999986
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.- +..|.+. +.-+.++.|-. +.+++= .+..+.+|++.+|+.++.+.||..
T Consensus 346 ~~-----l~~~~~~-----lif~t~ssd~~~~~~~ar-----------~~~~~~vwnl~~g~l~H~l~ghsd-------- 396 (1113)
T KOG0644|consen 346 EQ-----LAWRSNL-----LIFVTRSSDLSSIVVTAR-----------NDHRLCVWNLYTGQLLHNLMGHSD-------- 396 (1113)
T ss_pred hH-----hhhhccc-----eEEEeccccccccceeee-----------eeeEeeeeecccchhhhhhccccc--------
Confidence 31 2233332 22333443333 233332 288899999999999999999987
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.+..|.|+|=.. +..|++.||..-|||
T Consensus 397 --------------------------~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 397 --------------------------EVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred --------------------------ceeeeeecCCCcHhhhhccCCCceEeee
Confidence 788899998554 455899999999998
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-12 Score=140.16 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=147.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|+..-.|.. +.+.++-...+..+-+||.+.+.++..+. ++..- + .+..+|-
T Consensus 88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-l-------~~~~~~g------------------ 140 (967)
T KOG0974|consen 88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-L-------YSSLIIG------------------ 140 (967)
T ss_pred ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEE-E-------EeEEEEe------------------
Confidence 3444333332 44566667777889999998887765443 11110 0 0111111
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE-Eecc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT-SFED 341 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~-tl~g 341 (464)
+++ ..=++++|+.=+.|-+|+..--+.-.-+.||...+.++.||-||.+++|.| |++||+|++ +++.+- +.-|
T Consensus 141 ---~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 141 ---DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred ---ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 111 012445566667888999773332235899999999999999999999999 999999999 677766 8889
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
|+.. ||.+.|.|+ .|++++. |.|.|+|+. .|+-+.++.+|..
T Consensus 217 HsaR-----vw~~~~~~n--~i~t~ge-----------dctcrvW~~-~~~~l~~y~~h~g------------------- 258 (967)
T KOG0974|consen 217 HSAR-----VWACCFLPN--RIITVGE-----------DCTCRVWGV-NGTQLEVYDEHSG------------------- 258 (967)
T ss_pred ccce-----eEEEEeccc--eeEEecc-----------ceEEEEEec-ccceehhhhhhhh-------------------
Confidence 9998 899999999 9999986 999999985 8888889999986
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.||.++.+++-.+++||+.|+++|+||.
T Consensus 259 --------------~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 259 --------------KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred --------------cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 28999999999999999999999999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=136.36 Aligned_cols=230 Identities=18% Similarity=0.217 Sum_probs=166.3
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCEeEEEE----------eCCCceeEEEEE-cCCC
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKI----------RSSSHVPLKILS-IEDG 250 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V~~Vaf----------s~s~d~tIklWd-i~tG 250 (464)
-|..+.|. |=...++.+....+|+|||-+.++++..+. ...|.++.+ ..+.|+.||||+ -+++
T Consensus 1066 ~pk~~~~h-pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFH-PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeec-CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35578886 666778877777899999999999997776 356777777 236899999995 3443
Q ss_pred ----cEEEEEee---CC----cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEE-EcCCCcE
Q 012410 251 ----TVLKVFYH---LL----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFI-FLYENQL 317 (464)
Q Consensus 251 ----~~l~tl~~---~~----~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~-Fspdgql 317 (464)
+....+.. .. ...-=++| .|-.|+|+++++=..|||||+..-++.+.....+ ..|+++. -++.|.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW-qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDW-QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeeh-hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 23322322 11 11123444 3346899999989999999998888887655433 4566664 3467899
Q ss_pred EEEEe-CCeEEEEeCC----CceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 318 FLTFR-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 318 laS~s-D~TIklWd~~----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
||.|- ||.|+++|.+ --++...+.|+.+-+ |..+.+-+.|-- |+|||. ||.|++||+...
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~-----------~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQ-----------DGDIQLLDLRMS 1289 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeecc-----------CCeEEEEecccC
Confidence 99998 9999999973 236778999999854 678999887776 999987 999999998653
Q ss_pred eEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 392 KCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 392 ~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.-. -++..|-. ++ ..++++..+++..+|||||. +.|+||+.
T Consensus 1290 ~~e~~~~iv~~~~-------------------yG------------s~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWE-------------------YG------------SALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cccccceeeeccc-------------------cC------------ccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 111 12222221 10 04899999999999999999 99999984
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=134.16 Aligned_cols=244 Identities=9% Similarity=0.121 Sum_probs=166.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+-+||+..|-.+++| .+|.+.|++|+|+.||+..|+ ++.| +.+-||.-+.- + ++...|..-+
T Consensus 34 rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFAS----G~aD------K~VI~W~~klE---G---~LkYSH~D~I 96 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFAS----GSAD------KSVIIWTSKLE---G---ILKYSHNDAI 96 (1081)
T ss_pred EEEEEeCCCccccccc-ccccceEEEEEEccCCceecc----CCCc------eeEEEeccccc---c---eeeeccCCee
Confidence 4678999999999999 669999999999999999999 6666 78888873211 1 1111122222
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe---
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY--- 257 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~--- 257 (464)
....|+ |=.+.|||+|-. ..-+|....-.-.+--+...|.+.++..+ .++||.|=+- +|+.--.++
T Consensus 97 QCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 97 QCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPG 173 (1081)
T ss_pred eEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCC
Confidence 356675 555666666653 24566543322111111223444444332 3455555433 355444444
Q ss_pred eCCcceeeEEEEccCC----CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 258 HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
+...++|+|+|+|..+ +.+++....+|+-.+. -+|+.+..-+.-...|-.+.+-|+|.+++-|+ |+..+++.-.
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~-LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ-LSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEE-ecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 2345667777777542 4556667778888777 45666654333334566788889999999988 9999999989
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|-.+-|+.....| ||+|+..|++|+.+.||. ||||--+|+.
T Consensus 253 GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl~ 293 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNLI 293 (1081)
T ss_pred CeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhhH
Confidence 9999999998889 999999999999999998 9999998863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=127.16 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=172.6
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
...|++.|..+.+.|.+.+|+..+...++.+...+...|-.+-.-|++ .|.+ ..-| -.+-+|+|.-+..
T Consensus 21 ~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t----qgRd------~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 21 LFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT----QGRD------PLLILWTIAYSAF 89 (323)
T ss_pred hhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh----cCCC------ceEEEEEccCcce
Confidence 344588899999999999999888999999986788889999988974 4555 3344 5778888876554
Q ss_pred CCcccceeeccccCceEEEEeC-CCC----cEEEEecCCCc-EEEEeCCCCeEEEEe--c------CCCEeEEEEe----
Q 012410 174 DSGFALFESESLKWPGFVEFDD-VNG----KVLTYSAQDSI-YKVFDLKNYTMLYSI--S------DKHVQEIKIR---- 235 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~-pdG----k~LaSgs~D~t-iKlWdl~tg~~l~tl--~------~~~V~~Vafs---- 235 (464)
.. .+.- ...+.+|..||= +++ +.|++-+...- ..+=| -|....+. . .+.|+.....
T Consensus 90 i~---i~Si-~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D--~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 90 IS---IHSI-VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD--GGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred EE---Eeee-eccccccccceeccCCCcchhheecCCcccchhhhhc--cCccceeEccCchhccccCceeeeecccccc
Confidence 31 2221 233444544431 122 22333221110 11111 11111111 1 1223333321
Q ss_pred -------CCCceeEEEEEcCCCcEEEEEe----------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC--CcEE
Q 012410 236 -------SSSHVPLKILSIEDGTVLKVFY----------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELM 296 (464)
Q Consensus 236 -------~s~d~tIklWdi~tG~~l~tl~----------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t--g~~l 296 (464)
.-+++.|-+||+.+|..+-.|. .|..++.+|+|-+..+ .=++|+.+..+-.|.+.. |.|.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCccc
Confidence 1367889999999985443332 2457889999977543 234566666666776654 3332
Q ss_pred --EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 297 --EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 297 --~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
....-..-.|..+..-||++.|||++ |+-|||++- +++.+..|+-|..- |++||||||-.++|++|+
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask---- 313 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK---- 313 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC----
Confidence 12222234577888999999999999 999999999 79999999999977 899999999999999998
Q ss_pred cccccCCCCeEEEEeC
Q 012410 373 DQWMEGSAGSINVSSI 388 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi 388 (464)
|++|-||++
T Consensus 314 -------D~rISLWkL 322 (323)
T KOG0322|consen 314 -------DARISLWKL 322 (323)
T ss_pred -------CceEEeeec
Confidence 999999985
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-10 Score=133.95 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=162.5
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----------------CCEeEEEEeCC---------Cc
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKIRSS---------SH 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----------------~~V~~Vafs~s---------~d 239 (464)
+..|+.|+++..+|.+.++-+..+.|++||.. |+.+..+.. +.-+.|+|.++ ..
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 57788999985578899988999999999974 565544321 12477888763 22
Q ss_pred eeEEEEEcCCCcEEEEEeeC-----------------CcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEc--
Q 012410 240 VPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS-- 299 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~-----------------~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l-- 299 (464)
..|+.+|..+|. +.+|.+. ...-+.|+|.|. ++.+.++ ..+++|++||..+|......
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 568888888764 4455321 112267999884 4666654 68999999999888764321
Q ss_pred ------cc------CCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CCceEEEe-------------ccCC-------C
Q 012410 300 ------RT------EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RGELVTSF-------------EDHL-------L 344 (464)
Q Consensus 300 ------~g------h~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~Ge~l~tl-------------~gH~-------~ 344 (464)
.+ ....|+.++|+|||+ ++++-+ +++|++||. +|+..... -++. .
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 11 234688899999998 666666 899999998 45532111 0010 0
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+ -..++|+|||+++++-+. +++|++||..+|.+.. +-|... + ...+|.
T Consensus 804 ~~----P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~t-iaG~G~-~----G~~dG~---------- 852 (1057)
T PLN02919 804 QH----PLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVTT-LAGTGK-A----GFKDGK---------- 852 (1057)
T ss_pred cC----CceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEEE-EeccCC-c----CCCCCc----------
Confidence 11 247999999999888765 8999999998888764 333221 0 000000
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.....+.....|+++|||+.+++-+.+++|++||.
T Consensus 853 -----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 -----ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred -----ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 01222336778999999999999999999999984
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=134.11 Aligned_cols=278 Identities=13% Similarity=0.199 Sum_probs=205.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCCCC
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNG 198 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~pdG 198 (464)
.-|+. |..-|..|-|+..|+.|++ ++|| +++-+||..+++.... |..+|..-++ |+-|+ +-
T Consensus 136 ~kL~~-H~GcVntV~FN~~Gd~l~S----gSDD------~~vv~WdW~~~~~~l~---f~SGH~~NvfQaKFiP~s--~d 199 (559)
T KOG1334|consen 136 KKLNK-HKGCVNTVHFNQRGDVLAS----GSDD------LQVVVWDWVSGSPKLS---FESGHCNNVFQAKFIPFS--GD 199 (559)
T ss_pred hcccC-CCCccceeeecccCceeec----cCcc------ceEEeehhhccCcccc---cccccccchhhhhccCCC--CC
Confidence 35755 7788999999999999999 8899 9999999998887432 2232222222 67776 55
Q ss_pred cEEEEecCCCcEEEEeCC-CCeEEEEec----CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEe---eCCc
Q 012410 199 KVLTYSAQDSIYKVFDLK-NYTMLYSIS----DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFY---HLLH 261 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~-tg~~l~tl~----~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~---~~~~ 261 (464)
+.|++++.|+.+|+=.+- +|.+..+-. .+.|..+|.-| +.|.-++-.|+.++..-.++. ..-.
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 789999999999997754 566554332 45677777733 588889988988877665554 1111
Q ss_pred ---ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE------E-----Ecc-cCCCceEEEEEc-CCCcEEEEEeCCe
Q 012410 262 ---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM------E-----VSR-TEFMTPSAFIFL-YENQLFLTFRNRT 325 (464)
Q Consensus 262 ---~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l------~-----~l~-gh~~~v~sv~Fs-pdgqllaS~sD~T 325 (464)
....++..|.....+++++.|+-+|++|.+.-..- . .|. .....|..++|+ ..+.+|||-+|--
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 22777877754457778999999999997763321 1 111 112458899999 5556666666989
Q ss_pred EEEEeC---CC----------ceEEE-eccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 326 VAVWNF---RG----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 326 IklWd~---~G----------e~l~t-l~gH~~~~~~~~v~sv-afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|-|.+- .| .+++. ++||.+-.. |..| +|-|...+++|||+ =|-|-||+-.+
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T---VKgVNFfGPrsEyVvSGSD-----------CGhIFiW~K~t 425 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT---VKGVNFFGPRSEYVVSGSD-----------CGHIFIWDKKT 425 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccc---cceeeeccCccceEEecCc-----------cceEEEEecch
Confidence 999975 36 45555 999988532 4444 56899999999996 68999999999
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+.|+-+.|... -|.+|-=+|=-..|||.+-|.-||||-
T Consensus 426 ~eii~~MegDr~----------------------------------VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 426 GEIIRFMEGDRH----------------------------------VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred hHHHHHhhcccc----------------------------------eEeccCCCCCCchhhccCCccceeeec
Confidence 999999988664 788888899999999999999999994
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=120.65 Aligned_cols=199 Identities=14% Similarity=0.088 Sum_probs=129.1
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
...|-++|...++ ...+. ...+.+.+|+|+. ...|.+||+++|+......+ ...+..++|+|+ +
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spD-g 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PGMNGAPAFSPD-G 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CCCccceEECCC-C
Confidence 3457777765333 33333 3457788887752 25799999999976543332 244567899884 5
Q ss_pred CeEEEE-eCC--CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeCCCceEEEeccCCCCc
Q 012410 274 EKLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 346 (464)
Q Consensus 274 ~~lla~-s~D--~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~~Ge~l~tl~gH~~~~ 346 (464)
..|+.. +.+ ..|.+||+.+++..+.. .+........|+|||+.|+..+ ++ .|-+||+.+...+.+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 566653 444 46889999988765543 3434445678999999887665 33 566778753334455544443
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
+...+|||||++|+..+.. +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 4578999999999988751 0123799999988764 3332221
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
.....+|+|||+.|+.++.++.
T Consensus 366 ----------~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 366 ----------LDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred ----------CCCCceECCCCCEEEEEEeCCC
Confidence 1234589999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=112.09 Aligned_cols=263 Identities=13% Similarity=0.094 Sum_probs=165.6
Q ss_pred EeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
...++.|.+.+.+|.+.++|..+|+.+-..+. ......+++. ++..+++ +..+ ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v----~~~~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFV----GTEK------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEE----EcCC------CEEEEEECCCCcE-
Confidence 34578888999999999999999999987755 3333333333 3555555 2233 4677778888886
Q ss_pred CcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEe------------EEEEeCCCce
Q 012410 175 SGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------------EIKIRSSSHV 240 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~------------~Vafs~s~d~ 240 (464)
+|+...-+-+. +.... +++ +..++.|+.+..||.++|+.+..... .... ...+-+..++
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g 200 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG 200 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCC
Confidence 33321111000 11221 454 44567899999999999998866542 1111 1122334667
Q ss_pred eEEEEEcCCCcEEEEEeeCCc-------ce----eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLH-------RN----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 309 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~-------~~----~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv 309 (464)
.+.-+|.++|+.+.+...... +. .+... .++.+.+++.++.+..||+.+|+.+-..... ...+.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p 275 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP 275 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc
Confidence 899999999998876541100 00 11111 2478888889999999999999977654321 11122
Q ss_pred EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 310 IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+. .++++++...|+.|..+|. +|+.+-..+.-.... ..+..+ .|..|+.++. ||.|.++|.
T Consensus 276 ~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~~d~ 337 (377)
T TIGR03300 276 AV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHWLSR 337 (377)
T ss_pred eE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEEEEC
Confidence 21 2455554444999999999 799876553211110 112222 4667877776 999999999
Q ss_pred CCCeEEEEEccCC
Q 012410 389 LTGKCLAKINATN 401 (464)
Q Consensus 389 ~tG~cl~tl~gh~ 401 (464)
.+|+.+.+++.+.
T Consensus 338 ~tG~~~~~~~~~~ 350 (377)
T TIGR03300 338 EDGSFVARLKTDG 350 (377)
T ss_pred CCCCEEEEEEcCC
Confidence 9999999998665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=118.01 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=115.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
+-|.+ |-+|+|+.|+.+++|-+..++. +- ..=|-+|+ -..+.+++.|-.+++.++|.
T Consensus 15 ~qa~s-p~~~~l~agn~~G~iav~sl~s------l~----s~sa~~~g------------k~~iv~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 15 AQAIS-PSKQYLFAGNLFGDIAVLSLKS------LD----SGSAEPPG------------KLKIVPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHhhC-CcceEEEEecCCCeEEEEEehh------hh----ccccCCCC------------CcceeeccccCCCeeeeeee
Confidence 34565 8899999999999999988753 10 00011222 11223345555788999986
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCc-------EEEEc-ccCC-----CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAE-------LMEVS-RTEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l-~gh~-----~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
. ..||+++ ||-|+=|....-+ +.+.. .-|. -.|.+.-.-|...-++.+. |+.+--||+ +|+
T Consensus 72 d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 72 D---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR 147 (325)
T ss_pred h---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence 3 4555554 5999977644322 11211 1122 2466776666555455554 999999999 799
Q ss_pred eEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
...+|+||+.+ |-+|+- +.++++ .||++ |||+||||..|+||+++|..+.+
T Consensus 148 i~r~~rGHtDY-----vH~vv~R~~~~qi-lsG~E-----------DGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 148 IQREYRGHTDY-----VHSVVGRNANGQI-LSGAE-----------DGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred EEEEEcCCcce-----eeeeeecccCcce-eecCC-----------CccEEEEeccccceeEEeccccC
Confidence 99999999998 778888 666664 57765 99999999999999999987654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=138.51 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=101.5
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-------EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~- 331 (464)
-|..++|.|.+.++|+++.+|+.|+||-+..+-+ -..+.+|...+.++.|.| -..+||+++ |-||+|||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 4466778887889999999999999999988653 346888999999999997 466788888 999999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
++++.-.|.||+.. |.++||||||+.+|+.|+ ||+|++++-.+++
T Consensus 709 ~~~~~~~l~gHtdq-----If~~AWSpdGr~~AtVcK-----------Dg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQ-----IFGIAWSPDGRRIATVCK-----------DGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhheeccCcCc-----eeEEEECCCCcceeeeec-----------CceEEEeCCCCCC
Confidence 69999999999998 889999999999999999 9999999987664
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-10 Score=117.90 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=187.1
Q ss_pred eehhccCCeEEeeecccccEeeEeecC--CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 101 VFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 101 l~~l~~~g~~~~~~~~~g~~l~~ln~~--~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
+.+...+..+.+|+-...+...+.... .....+..+||++|+.+|- +.+ ..++|.++.+++.
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~----~~~-------~~v~i~~~~~~~~----- 67 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAY----SDN-------QVVKVFEIATLKV----- 67 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEE----EcC-------CeEEEEEccCCcE-----
Confidence 445566667788875554555544221 1445789999999999877 333 5899999888873
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEe-----cCC-----CcEEEEeCCCCeEEEEecC--CCEeEEEEeCCC-------c
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYS-----AQD-----SIYKVFDLKNYTMLYSISD--KHVQEIKIRSSS-------H 239 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSg-----s~D-----~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s~-------d 239 (464)
+++.... ....+.|| |-|.+|.+= -.| ..+++|+++|+.....+.. ..-|...||+++ .
T Consensus 68 ~lt~~~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~ 145 (566)
T KOG2315|consen 68 VLCVELK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS 145 (566)
T ss_pred EEEeccc-eeeeeeec-ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhc
Confidence 4444333 55579997 899888642 123 3466999999665555541 111455555421 1
Q ss_pred eeEEEEEcCCCcEEEEEee--CCcce--------------------------------------------------eeEE
Q 012410 240 VPLKILSIEDGTVLKVFYH--LLHRN--------------------------------------------------KKVD 267 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~--~~~~~--------------------------------------------------~~V~ 267 (464)
..+.++++.+- ++..+ +..++ .+|.
T Consensus 146 nev~f~~~~~f---~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvq 222 (566)
T KOG2315|consen 146 NEVQFYDLGSF---KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQ 222 (566)
T ss_pred ceEEEEecCCc---cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeE
Confidence 22333333220 00000 00111 1222
Q ss_pred E--EccCCCeEEEEe--CC---------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---CCeEEEEeC
Q 012410 268 F--IEQFNEKLLVKQ--EN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 331 (464)
Q Consensus 268 F--~~~~~~~lla~s--~D---------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s---D~TIklWd~ 331 (464)
| .....+.|+..+ .| .++.+.++++-.|.--|.. ...|.+|.|+|+|+-|+..- =.+|.|.|.
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 2 111111222222 44 3677788774445544544 37899999999998887753 779999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
+|..+..|..- . =|.++|+|.|.+|+-++. +---|.|-+||+.+-+||.++.+-..
T Consensus 302 r~~~v~df~eg--p-----RN~~~fnp~g~ii~lAGF--------GNL~G~mEvwDv~n~K~i~~~~a~~t--------- 357 (566)
T KOG2315|consen 302 RGKPVFDFPEG--P-----RNTAFFNPHGNIILLAGF--------GNLPGDMEVWDVPNRKLIAKFKAANT--------- 357 (566)
T ss_pred CCCEeEeCCCC--C-----ccceEECCCCCEEEEeec--------CCCCCceEEEeccchhhccccccCCc---------
Confidence 99999887432 2 367999999999999886 22358999999999999999977643
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC------CCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR------HGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~------DgtVrlWd 463 (464)
+-..|+|||+.++|+.. |.-++||+
T Consensus 358 ---------------------------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 358 ---------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ---------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34799999999999874 78899996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-09 Score=111.03 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=175.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-c--c
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-E--S 184 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~--~ 184 (464)
+.+.+.|..+++.+.++..+..- +-+ +||||+.|.++..|.+-.-++.....+.++|+++++..+..++=.. + .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999999999999998765433 234 9999999999886554444444457999999999998665443111 0 2
Q ss_pred ccCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCC------Ccee-EEEEEcCCCcEEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSS------SHVP-LKILSIEDGTVLK 254 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s------~d~t-IklWdi~tG~~l~ 254 (464)
...+..++|| |||+.|.-.- .+..+-|.|+.+++.+..+.- ...+-...+.. .|+. .++=.-.+|+...
T Consensus 104 ~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 104 GTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred cCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 3556689997 8999887443 389999999999999988762 22222222211 1221 1111122333211
Q ss_pred -EEe-eCC--cce-eeEEEEccCCCeEEEEeCCCeEEEEECCC-----CcEEEEcccC-------CCceEEEEEcCCCcE
Q 012410 255 -VFY-HLL--HRN-KKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTE-------FMTPSAFIFLYENQL 317 (464)
Q Consensus 255 -tl~-~~~--~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~t-----g~~l~~l~gh-------~~~v~sv~Fspdgql 317 (464)
+.. .+. ..+ ....|.+.++..+.++.+ |+|.+-|+.. .+.+.++... -..+--++++|||+.
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 100 000 000 111455544545555666 9999999544 4444443221 111223899999887
Q ss_pred EEEEe-----------CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 012410 318 FLTFR-----------NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 318 laS~s-----------D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+-... .+.|.++|. +++.+..+. |+. ++.|+|||||+ +|...+. .+++|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~----------~s~~V 324 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST----------GDKTL 324 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC----------CCCcE
Confidence 76632 258999999 799998876 653 67999999999 8877653 37899
Q ss_pred EEEeCCCCeEEEEEcc
Q 012410 384 NVSSILTGKCLAKINA 399 (464)
Q Consensus 384 klWdi~tG~cl~tl~g 399 (464)
-+-|+.+++.++++.+
T Consensus 325 sViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 325 YIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEECcCCeEEeeecc
Confidence 9999999999999833
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-12 Score=132.03 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=162.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
|-.+.|+ -||+.|+-|+..|-+-.+|..|+++...+. .+.|.+|+|=- ..-.-+.|+|-. |+.|..+..+
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRH 209 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhc
Confidence 4468887 799999999999999999999999998887 67899999832 233568888875 9999988854
Q ss_pred CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 260 LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
.++..++|.|. ..||+ +++.|-++--||.+|+++..+.+-...+....-+|-+-.+-.|- +|||.+|.- .-|.|
T Consensus 210 -~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 210 -IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred -Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 78899999996 67777 57999999999999999988887777788888899999999998 999999998 47878
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
.-+--|... |++||+.|+|+|+|+.+. |..+||||+.+-+-+.++.
T Consensus 287 vKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 287 VKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred HHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceee
Confidence 778889888 899999999999999987 9999999998766555543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-10 Score=118.27 Aligned_cols=303 Identities=17% Similarity=0.236 Sum_probs=209.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecC-------CCCcccceeeEEEEEecc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~s-------ddfs~L~~~ti~l~~i~~ 170 (464)
|-+||+...-| +++|.-..+-.|..+ .|.+ |+-+-|||+|.+|.+-+--.- -+|+.++ ...+||++.
T Consensus 44 G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n--~~~vwd~~s 117 (561)
T COG5354 44 GTYLFSEHAAG-VECWGGPSKAKLVRF--RHPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN--NVFVWDIAS 117 (561)
T ss_pred chheehhhccc-eEEccccchhheeee--ecCC-ceecccCcccceeeeeccCCccChhhccCCccccC--ceeEEeccC
Confidence 77777776665 677764444433333 3666 899999999999999652111 1233333 789999999
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE----EEecCCCEeEEEEeCC---------
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSISDKHVQEIKIRSS--------- 237 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l----~tl~~~~V~~Vafs~s--------- 237 (464)
|++..++..-....++|| .+.|+ -|.+++|--. -..++|.++ |+.+- +.|.-..|.+..|+|.
T Consensus 118 g~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 118 GMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred ceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEE
Confidence 999887776665456776 67887 7888888663 346889997 65542 3444567888888773
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE------e-----CCCeEEEEECCCCcEEEEcc
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~------s-----~D~tIkIWDv~tg~~l~~l~ 300 (464)
...+++||.|.-+..+.+-+--.-....+-+.+. |..|+.- + ...++.|.+++ +.-+.+..
T Consensus 194 tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~-g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~ 271 (561)
T COG5354 194 TPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL-GKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEK 271 (561)
T ss_pred ccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC-CceEEEEEEEeeecccceeccceEEEEeec-ccccceec
Confidence 4467899999988888764421011234444453 4555431 1 23678999977 44444444
Q ss_pred cCCCceEEEEEcCCCcEEEEEe---CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 301 TEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 301 gh~~~v~sv~FspdgqllaS~s---D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
+-.+.|..++|.|++..|+..+ +.++.+.|++|++...+.... =+.+.|||.+++++-++..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF~-------- 336 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGFD-------- 336 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecCC--------
Confidence 5578899999999999988865 889999999999776654332 3578999999999998761
Q ss_pred CCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee--
Q 012410 378 GSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-- 454 (464)
Q Consensus 378 s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-- 454 (464)
---|.|-+||.... +|+.++.|-+. .-+.|||||+.+.+.-
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~n~------------------------------------s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGLNT------------------------------------SYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ccccceEEeccCCceEEEEEeecCCc------------------------------------eEeeccCCceEEEecCCC
Confidence 12488999998655 45557766542 2357899999887763
Q ss_pred ----CCCcEEecc
Q 012410 455 ----RHGLVHVWS 463 (464)
Q Consensus 455 ----~DgtVrlWd 463 (464)
.|..|+|||
T Consensus 381 ~k~~~Dn~i~l~~ 393 (561)
T COG5354 381 EKLRVDNSIKLWD 393 (561)
T ss_pred cccccCcceEEEE
Confidence 488899987
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=125.64 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=139.8
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEE
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKl 212 (464)
..|+|+.+|..|++ +..| .++|+|+.+.-+.. +.+.++-+-+..+.|| ||||+|||=+.| ..+|
T Consensus 148 k~vaf~~~gs~lat----gg~d------g~lRv~~~Ps~~t~----l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT----GGTD------GTLRVWEWPSMLTI----LEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeee----cccc------ceEEEEecCcchhh----hhhHhhcCccccceeC-CCCcEEEEecCC-ceEE
Confidence 88999999999999 5566 79999998776664 3333444555689998 999999999999 8999
Q ss_pred EeCCCCeEEEEec----CCCEeEEEEeCCCce-eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 213 FDLKNYTMLYSIS----DKHVQEIKIRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 213 Wdl~tg~~l~tl~----~~~V~~Vafs~s~d~-tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
||+.+|.++.++. +.....+.|+.+.++ +++|.... .++..+.. .-+.+
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-----------------------~~~~~v~~---~~~~~ 265 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-----------------------FPGGGVRL---CDISL 265 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEec-----------------------CCCCceeE---EEeee
Confidence 9999998887665 234567777655322 23332221 01111111 12334
Q ss_pred EECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 288 LDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 288 WDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
|+-. -++..+....+ ..+++++-|+||+++|-|+ ||.|-|.+. +=++++ .=+-|... |..|.|+||.+++
T Consensus 266 w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYL 339 (398)
T ss_pred eccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCcc
Confidence 5421 12222333333 5799999999999999999 999999998 677766 44568776 8999999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeC
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+|-|. |.+++|--+
T Consensus 340 ~svSs-----------~~~~~v~~l 353 (398)
T KOG0771|consen 340 ASVSS-----------DNEAAVTKL 353 (398)
T ss_pred ccccc-----------CCceeEEEE
Confidence 99775 777777654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=110.12 Aligned_cols=167 Identities=7% Similarity=0.089 Sum_probs=108.2
Q ss_pred cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 209 IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
.+.++|...++...... ...+.+.+|||++ ...|.+||+.+|+...... ....+..++|+| ++.+|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEGLNGAPAWSP-DGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCCCcCCeEECC-CCCEE
Confidence 35566776544322222 4567888888842 2358899999997654322 223456789999 46677
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeC-CCceEE-EeccCCCCcC
Q 012410 277 LVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNF-RGELVT-SFEDHLLWHP 347 (464)
Q Consensus 277 la~-s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~-~Ge~l~-tl~gH~~~~~ 347 (464)
+.. +.++ .|.+||+.+++..+ +..+.....+..|+|||+.|+-.+ ++ .|-++|+ +|+..+ ++.++.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~---- 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY---- 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC----
Confidence 653 4444 68888999998765 444444566778999999877665 44 4666787 576433 333332
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.....|||||+.|+-.+.. .....|.++|+.+|+.
T Consensus 333 ---~~~~~~Spdg~~i~~~~~~--------~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 333 ---NARPRLSADGKTLVMVHRQ--------DGNFHVAAQDLQRGSV 367 (430)
T ss_pred ---ccceEECCCCCEEEEEEcc--------CCceEEEEEECCCCCE
Confidence 2357899999999876641 1133688999998875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=125.58 Aligned_cols=255 Identities=13% Similarity=0.127 Sum_probs=162.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCC-------------ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~-------------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
|++..+-..++.++.|+ .+|+.+.++..... ..-..|++.++|+.|.+ ++.. + +.|+
T Consensus 580 g~lyVaDs~n~rI~v~d-~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV--aDt~-n------~~Ir 649 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTD-LDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV--ADTE-N------HALR 649 (1057)
T ss_pred CeEEEEECCCCeEEEEe-CCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE--EeCC-C------ceEE
Confidence 66777777788999998 67887766633111 12478999999887777 3332 3 5677
Q ss_pred EEEeccCCCC--C--cccce--------eeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeE
Q 012410 165 IEYIRRGKPD--S--GFALF--------ESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE 231 (464)
Q Consensus 165 l~~i~~G~~~--~--~~~l~--------~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~ 231 (464)
..+..+|... . +.... +...+.+|..|+|+ | +|.+.++.+.++.|++||..+|... ++.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~------ 721 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTR-VFS------ 721 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEE-EEe------
Confidence 6676555431 0 00000 00125678899998 6 7888888899999999999887642 211
Q ss_pred EEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc----------
Q 012410 232 IKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR---------- 300 (464)
Q Consensus 232 Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~---------- 300 (464)
.+ +...-.+-..+. ...| ..-..|+|+|+ ++.|.++ +.++.|++||+.++.......
T Consensus 722 ----G~--G~~~~~~g~~~~-~~~~----~~P~GIavspd-G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 722 ----GD--GYERNLNGSSGT-STSF----AQPSGISLSPD-LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred ----cC--CccccCCCCccc-cccc----cCccEEEEeCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 11 000000000000 0011 22367899884 5556654 688999999998876321110
Q ss_pred -----------cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC--Cc-------CCCCeeEEEECCC
Q 012410 301 -----------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--WH-------PDCNTNNIYITSD 359 (464)
Q Consensus 301 -----------gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~--~~-------~~~~v~svafSpD 359 (464)
.....|..++|+|||+++++-+ +++|++||..+..+.++.|... .. .--....|+++||
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 1234578999999999999988 9999999995444444444211 00 0001468999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
|+++++-+. +++|++||+.+++.
T Consensus 870 G~lyVaDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECC-----------CCEEEEEECCCCcc
Confidence 999888654 89999999999875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-10 Score=116.86 Aligned_cols=173 Identities=11% Similarity=0.054 Sum_probs=112.0
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-C----CCeEEEEECCC---CcEEEEcccCCCceEEEEEc
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E----NENLQILDVRN---AELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~----D~tIkIWDv~t---g~~l~~l~gh~~~v~sv~Fs 312 (464)
.|-+.++.+|+..+... ....+...+|+| ++.+|+..+ . |..+.+||+.+ |+..+...++.....+.+||
T Consensus 212 ~I~~~~l~~g~~~~lt~-~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 212 KIFLGSLENPAGKKILA-LQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred eEEEEECCCCCceEeec-CCCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 47777888887544332 224456789999 466777644 2 44566688876 45555554444445678899
Q ss_pred CCCcEEEEEe--CCeEEEEeC--C--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 313 YENQLFLTFR--NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 313 pdgqllaS~s--D~TIklWd~--~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
|||+.|+..+ ++..+||.+ . |...+.+..+... +....|||||+.||..+.. .....|.+|
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~ 356 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVY 356 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEE
Confidence 9999887665 677777753 2 3445556555443 4578899999999877641 124579999
Q ss_pred eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCC--CcEEecc
Q 012410 387 SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRH--GLVHVWS 463 (464)
Q Consensus 387 di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~D--gtVrlWd 463 (464)
|+.+|++.. |..... .+.+..|+|||+.|+- +..+ ..|.+||
T Consensus 357 dl~~g~~~~-Lt~~~~----------------------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 357 DLATGRDYQ-LTTSPE----------------------------------NKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ECCCCCeEE-ccCCCC----------------------------------CccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 999998754 322211 4556889999998874 4333 3455554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-10 Score=110.81 Aligned_cols=219 Identities=12% Similarity=0.168 Sum_probs=154.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCC--E-------eEEEE-----eCC-CceeEEEEEcCCCcE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKH--V-------QEIKI-----RSS-SHVPLKILSIEDGTV 252 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~--V-------~~Vaf-----s~s-~d~tIklWdi~tG~~ 252 (464)
+|+|+ .|..-.|-|- |.-+|+++++-.+.-.+-. +.. + .-+|+ +|- .-..|-|||-....|
T Consensus 10 svs~N-QD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 10 SVSFN-QDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred EEEEc-cCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 69997 5766666554 4459999987643321111 111 1 12222 111 224689999988999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCC--CceEEEEEcCCCcEEEEEe--CCeEE
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEF--MTPSAFIFLYENQLFLTFR--NRTVA 327 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~--~~v~sv~FspdgqllaS~s--D~TIk 327 (464)
+.+|... .+|+.|.+.+ ++|++- -.+.|.+|... +=+.++.+.+-. ...-++.-+-+..+||--+ -|.|+
T Consensus 88 i~el~f~-~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 88 IIELSFN-SEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEec-cceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 9998854 7889999866 555553 45799999877 344455444332 2233333344566777766 88999
Q ss_pred EEeCC-Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEEccCCCC
Q 012410 328 VWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~~-Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gh~~~ 403 (464)
|=|+. -+. -.....|... |..++++-+|.+||++|. .|| |||||..+|+.+..|+--.+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred EEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc-
Confidence 99984 332 3688899987 789999999999999986 565 79999999999999864332
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+ ..|.+++||||++.||.+|+.||||+..
T Consensus 226 -----------~--------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 -----------R--------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred -----------h--------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 0 2899999999999999999999999974
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-08 Score=102.66 Aligned_cols=283 Identities=15% Similarity=0.173 Sum_probs=161.8
Q ss_pred CCeEEeeec--ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--CCCCCcccceee
Q 012410 107 SGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES 182 (464)
Q Consensus 107 ~g~~~~~~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~~~~l~~~ 182 (464)
.+-|..|+. .+|+.-..-......--.-++++|+++.|.+++....+. ..+..+.+.. |++......-.
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCCcceeEEeeeecc-
Confidence 355666654 455432211111222234578999999999966332123 4666666643 45421111111
Q ss_pred ccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEE---eCCCceeEEEEEcCCCcEEEEEe
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKI---RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vaf---s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
.-..|..|+++ |||+.|..+.. +++|-++++.. |.+..... .+.+ .|.. +.++
T Consensus 85 -~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-----~~~~~g~g~~~-------~rq~-------- 142 (345)
T PF10282_consen 85 -GGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-----TVRHEGSGPNP-------DRQE-------- 142 (345)
T ss_dssp -SSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-----EEESEEEESST-------TTTS--------
T ss_pred -CCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeee-----ecccCCCCCcc-------cccc--------
Confidence 12456689997 89999988875 88999999875 55432211 1111 0110 0111
Q ss_pred eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCc--EEE--Ec-ccCCCceEEEEEcCCCcEEEEEe--CCeEEEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME--VS-RTEFMTPSAFIFLYENQLFLTFR--NRTVAVW 329 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~--~l~--~l-~gh~~~v~sv~FspdgqllaS~s--D~TIklW 329 (464)
..+...|.|.| ++..+++.. ....|.++++.... +.. .+ ......|+-++|+|||+.+-... +++|.++
T Consensus 143 --~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 143 --GPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp --STCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred --cccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 13446788888 456666654 44589999987755 422 22 23346799999999999776655 9999999
Q ss_pred eCC---Cce--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEEEccCC
Q 012410 330 NFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKINATN 401 (464)
Q Consensus 330 d~~---Ge~--l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG~cl~tl~gh~ 401 (464)
++. |++ +++..-.. .+.....-..|++||||++|..... .+.+|-++++ .+|+. +.++.-.
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr----------~~~sI~vf~~d~~~g~l-~~~~~~~ 288 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR----------GSNSISVFDLDPATGTL-TLVQTVP 288 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC----------TTTEEEEEEECTTTTTE-EEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec----------cCCEEEEEEEecCCCce-EEEEEEe
Confidence 973 443 22222110 1111001568999999999988765 3789999998 34543 3322111
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
. .| +.-+.++|+|||+.|+.++ .+++|.+++
T Consensus 289 ~---------~G----------------------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 289 T---------GG----------------------KFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E---------SS----------------------SSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred C---------CC----------------------CCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 0 00 1457899999999999887 566788774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=119.55 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=114.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeCC--Cce-EEEeccCCCCcCC
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR--GEL-VTSFEDHLLWHPD 348 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~~--Ge~-l~tl~gH~~~~~~ 348 (464)
.++++-..++|||+|..||+.++.+.+|..++..+.|.. ....+.|++ |||||+||++ ++. ...+++|..- +
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~-~- 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT-P- 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC-c-
Confidence 456677999999999999999999999999999999986 567788888 9999999983 553 3466677632 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEE-ccCCCCCCcccccCCCCCCcccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
..+++..-.+++|+.|.. .+. .|-.|-+||+...+- ++.+ ..|.+
T Consensus 120 --f~~ld~nck~~ii~~GtE------~~~-s~A~v~lwDvR~~qq~l~~~~eSH~D------------------------ 166 (376)
T KOG1188|consen 120 --FICLDLNCKKNIIACGTE------LTR-SDASVVLWDVRSEQQLLRQLNESHND------------------------ 166 (376)
T ss_pred --ceEeeccCcCCeEEeccc------ccc-CceEEEEEEeccccchhhhhhhhccC------------------------
Confidence 456666668899998864 122 378899999987665 6555 35665
Q ss_pred ccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEecc
Q 012410 427 IRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd 463 (464)
+|+.|-|+|.. +.|+|||.||.|-|.|
T Consensus 167 ----------DVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 167 ----------DVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred ----------cceeEEecCCCCCeEEeecccceEEeee
Confidence 99999999955 6899999999999987
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-11 Score=124.45 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
.|..++|||||+.||+-| |+.+||.|+. -+++-.++---.- .-.|+|||||++||.|++ |.-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvtGGE-----------DDL 355 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVTGGE-----------DDL 355 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEecCC-----------cce
Confidence 678899999999999999 9999999994 5665555443333 568999999999999986 999
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
|-||.+..++.++-=+||.++|..+++
T Consensus 356 VtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 356 VTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred EEEEEeccceEEEeccccccceeeEee
Confidence 999999999999999999984444433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-10 Score=118.58 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=167.6
Q ss_pred ccCce---EEEEeCCCCcE-EEEecCCCcEEEEeCCCCeEEEEec-C-CCE------------------eEEEEe-----
Q 012410 185 LKWPG---FVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-D-KHV------------------QEIKIR----- 235 (464)
Q Consensus 185 ~~~~~---~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg~~l~tl~-~-~~V------------------~~Vafs----- 235 (464)
+.+|. .+..+ |||++ ||+|-.--.||++|+.+-.+-..=+ + +.| +.|-|+
T Consensus 48 fe~p~ast~ik~s-~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 48 FEMPTASTRIKVS-PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cCCccccceeEec-CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 44554 58887 89998 5778889999999998866543211 1 111 223331
Q ss_pred -----------------CC-------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 236 -----------------SS-------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 236 -----------------~s-------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
|+ .-..|.=+|++.|.-|..|.-....++.|..++- ++.|++|.+|+.|..||.+
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecch
Confidence 11 1234777899999999999866678899998884 5667778899999999999
Q ss_pred CCcEEEEccc------C-----CCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 292 NAELMEVSRT------E-----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 292 tg~~l~~l~g------h-----~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+.....++.- | ...|+++.|+.||-.++.|. +|.|-|+|++..----..+|..-.| +..+.|-+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p---i~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP---IKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc---eeeeccccc
Confidence 9876554422 2 23599999999999999999 9999999995332234567877665 788888665
Q ss_pred --CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 360 --QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 360 --g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
++.|+|.- ...+||||-.||+-.+.+..-+ .
T Consensus 283 ~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~-----------------------------------~ 315 (703)
T KOG2321|consen 283 DQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS-----------------------------------D 315 (703)
T ss_pred CCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------------------------C
Confidence 77888864 4789999999999988886544 5
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrl 461 (464)
|..+.|-|++=.+.+|.++..++-
T Consensus 316 lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCceeeecCCceEEEecCCCccee
Confidence 667788899999999998887754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=123.27 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=118.3
Q ss_pred cccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 184 SLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 184 ~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
..||.| .++++ .||..|||||.|.-+.|||.-.++++++++ || |+
T Consensus 46 L~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-----------------------Tg--------Ht 93 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSIS-----------------------TG--------HT 93 (758)
T ss_pred hccccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeee-----------------------cc--------cc
Confidence 445555 68997 799999999999999999998888877654 33 34
Q ss_pred cceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC----------cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEE
Q 012410 261 HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA----------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVA 327 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg----------~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIk 327 (464)
..+++|.|.|..+..+++ |..|+-|+|+|+... +.+....-|+..|.-++--|++ ..|-|++ ||||+
T Consensus 94 aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 94 ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 667888888877655555 679999999998852 2334566789999999999999 8999999 99999
Q ss_pred EEeCC--CceEEEeccCCCC---cC-CCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 328 VWNFR--GELVTSFEDHLLW---HP-DCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 328 lWd~~--Ge~l~tl~gH~~~---~~-~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
-.|++ -.|-....-|..- .+ .....++.+||. -.+||-|+. |--+||+|.
T Consensus 174 QyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 174 QYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-----------Cchhhhhhh
Confidence 99983 2343222211110 00 012568899995 456666654 888999994
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=118.13 Aligned_cols=254 Identities=14% Similarity=0.126 Sum_probs=161.5
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC--CCcccceeeccc
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFESESL 185 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~--~~~~~l~~~~~~ 185 (464)
+..-+|+..+-..-... ......|.++.|+|+...|..++ ..+ ++|-+||++.++. ..........+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG---~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGG---CYN------GQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEee---ccC------ceEEEEEccCCCCCCCcccccccccCC
Confidence 36788886654222222 33455699999999988888765 344 7999999987776 222222222222
Q ss_pred cCceEEEEe-CCCCcEEEEecCCCcEEEEeCCCCeE------EEEec--------CCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 186 KWPGFVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTM------LYSIS--------DKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 186 ~~~~~VaFs-~pdGk~LaSgs~D~tiKlWdl~tg~~------l~tl~--------~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
.....|.+- ++.+.-++|+|.||.|+.|++..-.+ +-+.. ...+..++|.|.... .=|--.+.|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 211133332 11224478889999999998764332 11111 235778888763111 111122223
Q ss_pred cEEE------------------EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCCCceEEEEE
Q 012410 251 TVLK------------------VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 251 ~~l~------------------tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~F 311 (464)
.+.+ ++.-|.+.+..|.|+|.+...+++++ |-++|||.-. .-..+-.+.-+...|.+++|
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 3222 22223467799999995444444444 9999999866 44455566667777999999
Q ss_pred cCCC-cEEEEEe-CCeEEEEeC-C--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 312 LYEN-QLFLTFR-NRTVAVWNF-R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 312 spdg-qllaS~s-D~TIklWd~-~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
||-- -+||+.. ||+|-|||+ . -+.+.+..-+... .+-+.++++|++|+.|.. -|+|.++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~-----l~~~~~s~~g~~lavGd~-----------~G~~~~~ 513 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA-----LTRVRWSPNGKLLAVGDA-----------NGTTHIL 513 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccc-----cceeecCCCCcEEEEecC-----------CCcEEEE
Confidence 9876 5788888 999999998 2 3344444444332 466888999999999976 8999999
Q ss_pred eCC
Q 012410 387 SIL 389 (464)
Q Consensus 387 di~ 389 (464)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 984
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=128.84 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=126.3
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
+-++ ++--++++|+.-+.|-+|+.. +. -.++ .+.+|-+.++++.|+.
T Consensus 139 ~g~s-~~~~~i~~gsv~~~iivW~~~-~d-------------------n~p~------------~l~GHeG~iF~i~~s~ 185 (967)
T KOG0974|consen 139 IGDS-AEELYIASGSVFGEIIVWKPH-ED-------------------NKPI------------RLKGHEGSIFSIVTSL 185 (967)
T ss_pred Eecc-CcEEEEEeccccccEEEEecc-cc-------------------CCcc------------eecccCCceEEEEEcc
Confidence 5565 788899999999999999864 11 1112 2344556778999988
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPD 348 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~ 348 (464)
++.++++.|+|.+||||++.+++-+. +.=||+..||.+.|+|. .++|++ |-|.++|+..|+.+..+++|...+
T Consensus 186 -dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~-- 260 (967)
T KOG0974|consen 186 -DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKG-- 260 (967)
T ss_pred -CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcc--
Confidence 57778888999999999999998776 77899999999999999 899999 999999999999999999999986
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+|.++..++.-.++++.. |+++|+||+.+
T Consensus 261 --iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 261 --IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred --eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 899999999999999986 99999999754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=121.83 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=178.8
Q ss_pred eecccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc----cC
Q 012410 113 FSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL----KW 187 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~----~~ 187 (464)
|+ ..|.++..|.. |...|..++.++.- ..++| +++| ++||+|+.+.=.-.+ .-+.++.. +-
T Consensus 1034 W~-p~G~lVAhL~E-hs~~v~k~a~s~~~~s~Fvs----gS~D------GtVKvW~~~k~~~~~--~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHE-HSSAVIKLAVSSEHTSLFVS----GSDD------GTVKVWNLRKLEGEG--GSARSELTYSPEGS 1099 (1431)
T ss_pred CC-ccceEeehhhh-ccccccceeecCCCCceEEE----ecCC------ceEEEeeehhhhcCc--ceeeeeEEEeccCC
Confidence 65 78999999955 66666677766655 88888 6788 899999984322111 11111111 11
Q ss_pred -ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcC-CCcEEEEEeeCCcceee
Q 012410 188 -PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 188 -~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~-tG~~l~tl~~~~~~~~~ 265 (464)
...|.+- ++|..+|-|+.||.|++.++..++--+. +-.. +++-|.+ .|..+ .+.+
T Consensus 1100 r~~~vt~~-~~~~~~Av~t~DG~v~~~~id~~~~~~~-----~~~~---------~ri~n~~~~g~vv-~m~a------- 1156 (1431)
T KOG1240|consen 1100 RVEKVTMC-GNGDQFAVSTKDGSVRVLRIDHYNVSKR-----VATQ---------VRIPNLKKDGVVV-SMHA------- 1156 (1431)
T ss_pred ceEEEEec-cCCCeEEEEcCCCeEEEEEccccccccc-----eeee---------eecccccCCCceE-Eeec-------
Confidence 1258886 8999999999999999999876421111 0001 1111111 23221 1211
Q ss_pred EEEEccCCC-eEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEec
Q 012410 266 VDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 340 (464)
Q Consensus 266 V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~ 340 (464)
|...... .++.+-.-+-|-+||+++..-+.+++. .-+.|++++.+|.++.++.|. -|.+-+||++ +.++.+.+
T Consensus 1157 --~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1157 --FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred --ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 1111123 333355778899999998775554432 226899999999999999999 9999999997 88888765
Q ss_pred -cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 341 -DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 341 -gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.|..++.. |+-.-+.|....++|++. +.-+-|-+||+++|.|-.+|...+.-|..-.+.++.
T Consensus 1235 ~P~~~~i~~--v~~~~~~~~~S~~vs~~~---------~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~------ 1297 (1431)
T KOG1240|consen 1235 HPARAPIRH--VWLCPTYPQESVSVSAGS---------SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN------ 1297 (1431)
T ss_pred CcccCCcce--EEeeccCCCCceEEEecc---------cCCCceeeeecccCcceEEEEcCCCCcchhhhcccc------
Confidence 23334221 444445555667777764 136889999999999999997764423222221111
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+..+.-+..+ ...+..-+..+++|+.|..||.||
T Consensus 1298 --------~~~kp~~~~~~-~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1298 --------DARKPDSLAGI-SCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred --------cCCCCCcccce-eeecccCCceeeecCCccceeecc
Confidence 01112222233 345555566899999999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-09 Score=105.12 Aligned_cols=169 Identities=12% Similarity=0.186 Sum_probs=129.0
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEE--
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-- 278 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-- 278 (464)
..+.|||=..+.|+.++. ...|.+|.++++ -...|++|... +=+.+..+.....+.-=.+..|..+..+|+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 468899977788888887 788999999875 55688999887 444555554211121112223333455566
Q ss_pred EeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCe-EEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 279 KQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRT-VAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~T-IklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
|=.=|.|||-|+..-+. -.+...|...+..++.+-+|.++||+| .|| |||||. +|++++.|.--... ..|..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~iy~ 231 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADIYC 231 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---heEEE
Confidence 33669999999887766 367789999999999999999999999 775 799999 79999999855443 23899
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
++||||+.+||.+|+ -|||.|+.+..
T Consensus 232 iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred EEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 999999999999987 89999998754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-09 Score=110.69 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=153.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-- 237 (464)
.++.+-|..+.+..+.++... .-...++|+ |||++|..++.|++|-++|+.+++.+.++. +..-..|++|++
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~----~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG----APHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK 90 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST----TEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred CEEEEEECCCCeEEEEEcCCC----CceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence 477777877777654333211 002368897 999999999999999999999999999998 667899999985
Q ss_pred -------CceeEEEEEcCCCcEEEEEeeC-------CcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEE-Eccc
Q 012410 238 -------SHVPLKILSIEDGTVLKVFYHL-------LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME-VSRT 301 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l~tl~~~-------~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~-~l~g 301 (464)
...++.|+|.+|.+.++++.-. ..++..|..++. ...+++.- +-+.|-+-|....+.+. ....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 3468999999999999988621 125566766664 33345454 34666666877654332 2222
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc----CCC-----CcCCC-CeeEEEECCCCCEEEEEec
Q 012410 302 EFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED----HLL-----WHPDC-NTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 302 h~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g----H~~-----~~~~~-~v~svafSpDg~~LaSgs~ 368 (464)
-...+....|+|+|++|+.+. +..|-++|. +++++..+.- |.. .|+.+ .||.. +-.+...++.-.
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ig 247 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPLIG 247 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEEEE
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee--ccccceeccccc
Confidence 234678899999999877754 779999999 6888876642 221 11111 12222 223344333222
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
...+.+||..+.+.++++..... . .-+.-+||++
T Consensus 248 -----------~~~v~v~d~~~wkvv~~I~~~G~----------------------------------g-lFi~thP~s~ 281 (369)
T PF02239_consen 248 -----------TDPVSVHDDYAWKVVKTIPTQGG----------------------------------G-LFIKTHPDSR 281 (369)
T ss_dssp -------------TTT-STTTBTSEEEEEE-SSS----------------------------------S---EE--TT-S
T ss_pred -----------CCccccchhhcCeEEEEEECCCC----------------------------------c-ceeecCCCCc
Confidence 35677899999999999987653 4 3467799999
Q ss_pred EEEEe----eCCCcEEecc
Q 012410 449 EIYTG----NRHGLVHVWS 463 (464)
Q Consensus 449 ~LaSg----s~DgtVrlWd 463 (464)
.|+.. ...++|.|+|
T Consensus 282 ~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEE
T ss_pred cEEeeccCCCCCceEEEEE
Confidence 99887 5567888876
|
... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-10 Score=119.05 Aligned_cols=167 Identities=10% Similarity=0.099 Sum_probs=135.4
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec------C---CCEeEE--EEeC------------C----------Ccee
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------D---KHVQEI--KIRS------------S----------SHVP 241 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~------~---~~V~~V--afs~------------s----------~d~t 241 (464)
||-+.++|+...|+-+|+||..++++...+. . ..+|.+ ..+| + .-+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4778899999999999999999988765443 1 223333 3344 1 3357
Q ss_pred EEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 242 LKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
|-+.++..|++-.+|.. |-.+|.++.... .-+-|-+++.|..+-.|+...++.+......+..|.++..+|||.+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 88889999999998883 334556665433 346777889999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-----CCEEEEEec
Q 012410 320 TFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 368 (464)
Q Consensus 320 S~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD-----g~~LaSgs~ 368 (464)
++| ++||+||+ ++|.+.+|+||... |+.+.|.-+ |+++.|+..
T Consensus 161 ~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 161 TAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred ecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 998 89999999 79999999999998 899999998 888888654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=122.48 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=166.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEecCCCEeEEEE----------------eCCCceeEEEEEcCCCcE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKI----------------RSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~~~~V~~Vaf----------------s~s~d~tIklWdi~tG~~ 252 (464)
+|.++ .+..+|-+++.+..++-||+.+-.. +..+++..|...-+ -.++|+.+-|.+- .|++
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~rV 96 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK-SARV 96 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecc-cchh
Confidence 56665 4666776666666677777654321 22222222222222 0146778777765 4777
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~- 331 (464)
-+...-|..-+.+-.|+| +|--|++.++||.||||. ++|-+..++......|++++|-|+..-++-..-+.+-|=-+
T Consensus 97 E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc
Confidence 777775545666667888 577789999999999999 99998888887778999999999998776655333333333
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+-+.+ ..+.|..- |-++.++|..++|+||++ |-..|||| ..|+-|.+-.+|........+-
T Consensus 175 ~n~k~i-~WkAHDGi-----iL~~~W~~~s~lI~sgGE-----------D~kfKvWD-~~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 175 ANSKII-RWRAHDGL-----VLSLSWSTQSNIIASGGE-----------DFRFKIWD-AQGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred ccccee-EEeccCcE-----EEEeecCccccceeecCC-----------ceeEEeec-ccCcccccCChhccceeeeeec
Confidence 33333 57788876 789999999999999986 99999999 5899888877777533333333
Q ss_pred CCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 411 GSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++.. -.-..+++.++.+ .++ .|..++|||||..++.|...|.|-
T Consensus 237 pd~~--~~v~S~nt~R~~~p~~G----SifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 237 PEKD--YLLWSYNTARFSSPRVG----SIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred cccc--eeeeeeeeeeecCCCcc----ceEEEEEcCCCceeeccccCceEE
Confidence 3311 1223344444432 333 899999999999999999888763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-08 Score=101.71 Aligned_cols=259 Identities=12% Similarity=0.106 Sum_probs=159.0
Q ss_pred CCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC----------CCcEEEEeCCCCeEEE
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLY 222 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~----------D~tiKlWdl~tg~~l~ 222 (464)
..|+++. .++.+-|..+++..++.+ .+ ..|..+ +| |||+.|..+.. +..|.|||++|++.+.
T Consensus 20 ~~~~~~~-~~v~ViD~~~~~v~g~i~---~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 20 PGHFAAT-TQVYTIDGEAGRVLGMTD---GG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CcccccC-ceEEEEECCCCEEEEEEE---cc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 3456666 677788888888764333 22 234455 87 89998877665 7899999999999998
Q ss_pred EecC--C-------CEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCC
Q 012410 223 SISD--K-------HVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 283 (464)
Q Consensus 223 tl~~--~-------~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~ 283 (464)
.+.- . .-..+++||+ .+..|-+.|+++++.+.+..-..+ +.+--.+ ++...+-+.|+
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~--~~vy~t~--e~~~~~~~~Dg 167 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC--YHIFPTA--NDTFFMHCRDG 167 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC--cEEEEec--CCccEEEeecC
Confidence 8761 1 2347778874 367899999999999998862101 1111000 11111222222
Q ss_pred eEEEEEC-CCCcEE----EEcccCC----CceEEEEEcC-CCcEEEEEeCCeEEEEeCCC------ceEEEeccC---CC
Q 012410 284 NLQILDV-RNAELM----EVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG------ELVTSFEDH---LL 344 (464)
Q Consensus 284 tIkIWDv-~tg~~l----~~l~gh~----~~v~sv~Fsp-dgqllaS~sD~TIklWd~~G------e~l~tl~gH---~~ 344 (464)
...---+ .+|+.. .++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.| +.+.++... ..
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccc
Confidence 2221111 122211 1111211 223 4565 77776555569999999643 233333322 24
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
|.|.- ..-++++|||+.|.-......+.. -....+.|-++|..|++.++.+.--.
T Consensus 245 wrP~g-~q~ia~~~dg~~lyV~~~~~~~~t-hk~~~~~V~ViD~~t~kvi~~i~vG~----------------------- 299 (352)
T TIGR02658 245 WRPGG-WQQVAYHRARDRIYLLADQRAKWT-HKTASRFLFVVDAKTGKRLRKIELGH----------------------- 299 (352)
T ss_pred cCCCc-ceeEEEcCCCCEEEEEecCCcccc-ccCCCCEEEEEECCCCeEEEEEeCCC-----------------------
Confidence 66543 345999999999987432000000 01124689999999999999986422
Q ss_pred ccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEecc
Q 012410 425 SYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd 463 (464)
.+++|+|||||+ .|+..+ .+++|.+-|
T Consensus 300 ------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 ------------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred ------------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 789999999999 999888 578888765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=108.74 Aligned_cols=224 Identities=13% Similarity=0.158 Sum_probs=151.7
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCC-----CEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCc--ccc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSG--FAL 179 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g-----~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~--~~l 179 (464)
++++-+ .+|+.+..-|+.|...+..+-|.|+- +.||| +.| ..|||-+- .++.... +..
T Consensus 77 iv~ld~-~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-----s~D-------~LRlWri~~ee~~~~~~~~L~~ 143 (364)
T KOG0290|consen 77 IVQLDE-DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-----SSD-------FLRLWRIGDEESRVELQSVLNN 143 (364)
T ss_pred EEEEcc-CCCceeccCCCCCCCCccceEecCCccccCcchhhc-----ccC-------eEEEEeccCcCCceehhhhhcc
Confidence 566664 78999988889999999999999986 46777 223 78999885 3333110 011
Q ss_pred eeeccccCc-eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee
Q 012410 180 FESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 180 ~~~~~~~~~-~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~ 258 (464)
.....+.-| .+..++..|-++|.++|-|-|..|||+++|.- |.+-..|--
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----------------------------~~vkTQLIA 194 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----------------------------GTVKTQLIA 194 (364)
T ss_pred CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------------------cceeeEEEe
Confidence 111111111 25556667778999999999999999887621 111112222
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-cc-C-CCceEEEEEc-CCCcEEEEEe--CCeEEEEeCC
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT-E-FMTPSAFIFL-YENQLFLTFR--NRTVAVWNFR 332 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~g-h-~~~v~sv~Fs-pdgqllaS~s--D~TIklWd~~ 332 (464)
|-..|+.|+|....-+.+++-|.||.+|++|++.-+.-... ++ . ....--++++ .|-+++||+- ...|.|-|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 23556666666522244555689999999999987643321 11 1 1234456666 5677899988 4589999995
Q ss_pred --CceEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 333 --GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 333 --Ge~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+..+.+|++|... ||.|++-|. ...|+|+++ |..+-|||+.+
T Consensus 275 ~P~tpva~L~~H~a~-----VNgIaWaPhS~~hictaGD-----------D~qaliWDl~q 319 (364)
T KOG0290|consen 275 VPCTPVARLRNHQAS-----VNGIAWAPHSSSHICTAGD-----------DCQALIWDLQQ 319 (364)
T ss_pred CCCcceehhhcCccc-----ccceEecCCCCceeeecCC-----------cceEEEEeccc
Confidence 8889999999987 899999996 457777765 99999999854
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=118.69 Aligned_cols=157 Identities=12% Similarity=0.153 Sum_probs=117.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~ 258 (464)
+-.++ |||.-|.+++.||.||+|. ++|-+..++- ...|+++++-|+ .+..||=+-.+ -++++ .+-
T Consensus 109 ~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n-~k~i~-WkA 184 (737)
T KOG1524|consen 109 SGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN-SKIIR-WRA 184 (737)
T ss_pred hcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc-cceeE-Eec
Confidence 45676 8999999999999999998 5665544554 467999999774 33344433322 22332 222
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTS 338 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~t 338 (464)
|.+-+-+++|+++ ++.|++|++|-..|||| ..|+.+-+...|.-.+++|+|.|| +++|-+|=+|.|+
T Consensus 185 HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~---------- 251 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF---------- 251 (737)
T ss_pred cCcEEEEeecCcc-ccceeecCCceeEEeec-ccCcccccCChhccceeeeeeccc-cceeeeeeeeeee----------
Confidence 3366789999997 56788899999999999 778888888899999999999999 8898888667763
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.-... .|.++++||||..++.|+.
T Consensus 252 -~~p~~G----SifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 252 -SSPRVG----SIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -cCCCcc----ceEEEEEcCCCceeecccc
Confidence 222111 2789999999999999885
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-09 Score=110.21 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=103.8
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
++.++|...++. +.+. ...+.+.+|||+ ....|.+||+.+|+... +......+..++|+| ++.+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCE
Confidence 566667654433 2222 345667777764 22358899999987643 322113446789998 4666
Q ss_pred EEE-EeCCCe--EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeC-CCceEE-EeccCCCCc
Q 012410 276 LLV-KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNF-RGELVT-SFEDHLLWH 346 (464)
Q Consensus 276 lla-~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~-~Ge~l~-tl~gH~~~~ 346 (464)
|+. .+.|++ |.+||+.+++..+. ..+.......+|+|||+.|+..+ ++. |-++|+ +|+... ++.++..
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-- 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN-- 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC--
Confidence 765 456665 77789998886554 33444566788999999887665 454 445567 466433 3344432
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.+.+|||||++|+-.+.. +....|.++|+.+|+.
T Consensus 353 -----~~~~~SpDG~~l~~~~~~--------~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 -----LGGSITPDGRSMIMVNRT--------NGKFNIARQDLETGAM 386 (448)
T ss_pred -----cCeeECCCCCEEEEEEec--------CCceEEEEEECCCCCe
Confidence 357899999999876541 1122455678888764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-09 Score=109.32 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=162.3
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC------CeEEEEec---CCCEeEEEEe--------CCCceeEEEEEc
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSIS---DKHVQEIKIR--------SSSHVPLKILSI 247 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t------g~~l~tl~---~~~V~~Vafs--------~s~d~tIklWdi 247 (464)
++-++++.|| .||+.||||+.|.-++||++.. .+.+.... ..+|.+++|. ...+++|-+-||
T Consensus 56 ~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 56 TGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred ccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 3434479998 6999999999999999999763 23332221 2579999993 458899999999
Q ss_pred CCCcEEEEEeeC--CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEE--EcccCCCceEEEEEcCCC-cEEEEE
Q 012410 248 EDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LME--VSRTEFMTPSAFIFLYEN-QLFLTF 321 (464)
Q Consensus 248 ~tG~~l~tl~~~--~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~--~l~gh~~~v~sv~Fspdg-qllaS~ 321 (464)
++-+-|..+.+. -+-|+.++-+|. +..+++.+.|+.|-+||.+..+ .+. .+..-...-.++-|.|.- .+||+.
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 999999999864 235677777786 4566778899999999999876 222 122222345677899865 577777
Q ss_pred e-CCeEEEEeCC--CceEE------Eecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 322 R-NRTVAVWNFR--GELVT------SFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 322 s-D~TIklWd~~--Ge~l~------tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+ -+-+-|||.+ ...+. .|.. .+.| .++-|+|+|..+.+--. -..=-++|+.+.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~------M~~~~~~~G~Q~msiRR-----------~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW------MGSLWSPSGNQFMSIRR-----------GKCPLYFDFISQ 276 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhh------hheeeCCCCCeehhhhc-----------cCCCEEeeeecc
Confidence 7 8889999974 22221 2322 3345 46889999999987543 334457888888
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|..--..|+ |.+.- ....+-+..|--|.. ++|||.|=-|++|..
T Consensus 277 R~~V~k~D~N--~~GY~-------------------------N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 277 RCFVLKSDHN--PNGYC-------------------------NIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred cceeEeccCC--CCcce-------------------------eeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 8854333443 12210 012677888876665 999999999999963
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-09 Score=109.73 Aligned_cols=309 Identities=15% Similarity=0.217 Sum_probs=207.3
Q ss_pred cccceEEEEec----cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc----c
Q 012410 87 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS----L 158 (464)
Q Consensus 87 ~~s~v~~~~~a----g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~----L 158 (464)
.|.-..+-|.- |-+|++..+-| |+||.=..=.+++- ++|.+ |+=+-|||+-.+|+|.| +..... -
T Consensus 207 ~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R--F~Hp~-Vq~idfSP~EkYLVT~s---~~p~~~~~~d~ 279 (698)
T KOG2314|consen 207 ERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR--FYHPG-VQFIDFSPNEKYLVTYS---PEPIIVEEDDN 279 (698)
T ss_pred hhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHh--ccCCC-ceeeecCCccceEEEec---CCccccCcccC
Confidence 34445566665 99999998887 67885333233433 45877 89999999999999966 322222 2
Q ss_pred ceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE--EEecCCCEeEEEEeC
Q 012410 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIRS 236 (464)
Q Consensus 159 ~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l--~tl~~~~V~~Vafs~ 236 (464)
.|+++.||||++|....+|+.+......|| .+.+| .|+|++|-=..| +|-|++...-.++ +++.-.+|+...++|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccc-eEEec-cCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC
Confidence 459999999999999999988876667777 66887 799999976654 6889986653333 355567788888887
Q ss_pred C-----------Cc--eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC-eEEEEe----C---C---CeEEEEECCC
Q 012410 237 S-----------SH--VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQ----E---N---ENLQILDVRN 292 (464)
Q Consensus 237 s-----------~d--~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s----~---D---~tIkIWDv~t 292 (464)
. .+ ..+.|..+.+++.|++-+- +.|..+...=|.++ +|.+.- . . -++.|.-++-
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 3 22 3577888889988887662 33422222223333 443321 1 1 1344555554
Q ss_pred CcE-EEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeCC-----CceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 293 AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 293 g~~-l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~~-----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
.+. +... .-...|-++++-|.|..|+.-+ -.||..+-+. -+++.+|.... .|.|.|||-|++
T Consensus 435 KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~f 506 (698)
T KOG2314|consen 435 KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRF 506 (698)
T ss_pred cCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcE
Confidence 432 2221 1235788999999999988865 3488999873 23677776532 468999999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
++.+.. .|.-|.+-..|..-..|..+ +|..++ .-+.+.
T Consensus 507 vvva~l--------~s~~g~l~F~D~~~a~~k~~--~~~eh~--------------------------------~at~ve 544 (698)
T KOG2314|consen 507 VVVAAL--------VSRRGDLEFYDTDYADLKDT--ASPEHF--------------------------------AATEVE 544 (698)
T ss_pred EEEEEe--------cccccceEEEecchhhhhhc--cCcccc--------------------------------ccccce
Confidence 999875 45678899999754344332 222100 345688
Q ss_pred EcCCCCEEEEeeCCC
Q 012410 443 YDEERNEIYTGNRHG 457 (464)
Q Consensus 443 fspDg~~LaSgs~Dg 457 (464)
++|.|++.+++|.-.
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 999999999998633
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=113.81 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=165.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC----------CCceeEEEEEc-CCCcEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS----------SSHVPLKILSI-EDGTVLKV 255 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~----------s~d~tIklWdi-~tG~~l~t 255 (464)
.|.|. ..|..|+|||.|..|-|||...++....+. .++|-.-+|=| +.|+.|++=.+ ++|.|.+|
T Consensus 147 tV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t 225 (559)
T KOG1334|consen 147 TVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT 225 (559)
T ss_pred eeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence 79997 799999999999999999999988876665 45666666744 35566665543 57777755
Q ss_pred Ee--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---ccCCC---ceEEEEEcCCCc-EEEEEe-CCe
Q 012410 256 FY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFM---TPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 256 l~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~gh~~---~v~sv~Fspdgq-llaS~s-D~T 325 (464)
-. -|..++.+++.-|.+.-.++++++|+.++=.|++++..-..+ ..+.. ...+++..|-+. +||+++ |.-
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 43 344788999988877889999999999999999998754433 22333 566788887766 888888 999
Q ss_pred EEEEeC---CCc----eEEEeccCCC-CcCCCCeeEEEEC-CCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC---
Q 012410 326 VAVWNF---RGE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG--- 391 (464)
Q Consensus 326 IklWd~---~Ge----~l~tl~gH~~-~~~~~~v~svafS-pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG--- 391 (464)
++++|. ..+ .+.+|.-|.+ -....+|..++|| ..+.+||||. |--|.|.+-. -|
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFNKSMGDGSEP 373 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEeccccccCCCC
Confidence 999995 233 1333333322 2112247889999 5678899986 6778888532 23
Q ss_pred -------eEEEE-EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 392 -------KCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 392 -------~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.++. ++||.+ .+..+.|. +|-|...+++|||.=|-|-+|+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN-----------------------------~~TVKgVN--FfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRN-----------------------------SRTVKGVN--FFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCcchhhccchhhccccc-----------------------------ccccceee--eccCccceEEecCccceEEEEe
Confidence 33444 778875 11223443 7899999999999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=103.28 Aligned_cols=167 Identities=11% Similarity=0.128 Sum_probs=118.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeCCCc--------eeEEEEEcC----------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSSSH--------VPLKILSIE---------- 248 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s~d--------~tIklWdi~---------- 248 (464)
.||+. +.=-.+|++..|-+||++|-+ ++|.-.|+ ..+|.++||.|-.- .-|-||...
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~ks-st~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDKS-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEeccC-CCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccc
Confidence 46664 444456778899999999954 46655554 68899999988311 357788653
Q ss_pred --CCcEEEEEeeCC-cceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 249 --DGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 249 --tG~~l~tl~~~~-~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+--+++.|++.. -.|.++++.++ +..++.++ .|..|.|||+.+|+++-...-.-..++-+-|||||..|..+. |
T Consensus 181 ~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred cccccchhheeCCCCceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 112334445332 35689999884 66666677 889999999999998876533335677788999999999999 9
Q ss_pred CeEEEEeCC----CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 RTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ~TIklWd~~----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
++.+||+.+ -|..-...| . |....+||+|.+|.=.+
T Consensus 260 avfrlw~e~q~wt~erw~lgsg---r-----vqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSG---R-----VQTACWSPCGSFLLFAC 299 (445)
T ss_pred ceeeeehhcccceecceeccCC---c-----eeeeeecCCCCEEEEEE
Confidence 999999642 222223333 3 77889999999887665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=104.99 Aligned_cols=214 Identities=15% Similarity=0.147 Sum_probs=147.8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEe--------cCCCEeEEEEe------CCCceeEEEEEcCCCc----EEEEEee
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKHVQEIKIR------SSSHVPLKILSIEDGT----VLKVFYH 258 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl--------~~~~V~~Vafs------~s~d~tIklWdi~tG~----~l~tl~~ 258 (464)
++.+|.-.+.|..+...+.....+...+ ....|...+-. ..+++-+.+|.++.|- .+..+.-
T Consensus 68 ~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~ 147 (412)
T KOG3881|consen 68 ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT 147 (412)
T ss_pred ceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeec
Confidence 3445555555666666665554443322 12233333332 1356677777777432 2222221
Q ss_pred CCcceeeEEEEccCCCeEEEEeCC--CeEEEEECCCCcEEEEcccC-----------CCceEEEEEcCC--CcEEEEEe-
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLYE--NQLFLTFR- 322 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D--~tIkIWDv~tg~~l~~l~gh-----------~~~v~sv~Fspd--gqllaS~s- 322 (464)
+ ..+..|.=.+.....+++|+.. ..++|||+++++ +++.+- .-|+.++.|.|. .+.||++.
T Consensus 148 g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 148 G-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred C-CceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec
Confidence 1 2222332233334555668877 889999998884 444332 135668899998 99999999
Q ss_pred CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-Ecc
Q 012410 323 NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INA 399 (464)
Q Consensus 323 D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~g 399 (464)
-+.||++|. . -+.+.+|.=-.+. +.++...|+|++|..|-. -+-+..+|+.+|+.+.. ++|
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeeccccCC
Confidence 999999998 3 4567777655555 789999999999999876 78899999999998876 888
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-++ .|.+|-.+|.++.|||++-|.-|||.|
T Consensus 289 ~tG----------------------------------sirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITG----------------------------------SIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccC----------------------------------CcceEEEcCCCceEEeeccceeEEEee
Confidence 776 889999999999999999999999987
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=107.17 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCceeEEEEEcCCCcEEEEEee---CCcce------eeEEEEcc-----------CCC-eEEE-EeCCCeEEEEECCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYH---LLHRN------KKVDFIEQ-----------FNE-KLLV-KQENENLQILDVRNAE 294 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~---~~~~~------~~V~F~~~-----------~~~-~lla-~s~D~tIkIWDv~tg~ 294 (464)
++|+-+|||+.++++..+.|.- ..... -.+..+|. .++ -+++ |-..|.|.++++..|+
T Consensus 12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~ 91 (541)
T KOG4547|consen 12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGE 91 (541)
T ss_pred CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCe
Confidence 5689999999999999888762 21211 22222222 112 2344 5588999999999999
Q ss_pred EEEEcc--cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 295 LMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 295 ~l~~l~--gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
.-..+. .|...|.++..+.+-..|=|++ |..|-.|++ ++.....+.+-..- +.+++++|||++|+++|
T Consensus 92 it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~~~l~~as--- 163 (541)
T KOG4547|consen 92 ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDGKILLTAS--- 163 (541)
T ss_pred EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCCCEEEecc---
Confidence 887665 6889999998899999999999 999999999 69998888887765 78999999999999985
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+++++-+.+|.||.+
T Consensus 164 ----------~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 164 ----------RQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ----------ceEEEEEccCceEEEEecCCCc
Confidence 6899999999999999999997
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-08 Score=100.67 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=156.1
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC------cccceeeccccCceEEEEeCCCCcEEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
+.|.+++|..+++.=+.+. .+.+ +.+....+..+.+.. +..+.+ +.+-..+- .|| .|+.
T Consensus 56 ~ris~l~~~~d~~tevl~~--r~~~------~~~~~~~~~E~~~~s~~~~~~~~~l~~----~~I~gl~~--~dg-~Lit 120 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNA--RSAD------DDLPKFVIEEFEISSSLDDAKTVSLGT----KSIKGLKL--ADG-TLIT 120 (412)
T ss_pred hhhhhheeecCCceeEeec--cccC------cccccccccCCcccccccccccccccc----ccccchhh--cCC-EEEE
Confidence 4567777777766655543 3233 333333333333221 111222 11224444 478 4556
Q ss_pred ecCCCcEEEEeCCCCeE----EEEec-CCCEeEEEEe---------CCCc--eeEEEEEcCCCcEEEEEeeC------C-
Q 012410 204 SAQDSIYKVFDLKNYTM----LYSIS-DKHVQEIKIR---------SSSH--VPLKILSIEDGTVLKVFYHL------L- 260 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~----l~tl~-~~~V~~Vafs---------~s~d--~tIklWdi~tG~~l~tl~~~------~- 260 (464)
|-.++.+.+|.++.+.. +..+. ...+..+.-. .... .-++|||++++ .++++.- +
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLG 198 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCcccc
Confidence 78899999999984431 11111 1122222211 1222 57999999987 4445420 1
Q ss_pred ----cceeeEEEEccC-CCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C
Q 012410 261 ----HRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 261 ----~~~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~ 332 (464)
-+...+.|.|.+ +.+++++..=+.+|+||.+.+. .+..+.-....++++...|+|+++.++. -+.+...|. +
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 123678898854 4677778888999999999876 4444444446788999999999999999 999999999 5
Q ss_pred CceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 333 GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 333 Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
|+++.. |.|-+.. +.+|.-.|.+++|||++- |..|||.|++|-+.+.+.
T Consensus 279 ~kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 279 GKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ceeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 887765 8888877 889999999999999987 999999999998877654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=109.21 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
-+.++ |.|++||.+-.++..-++++.. + ....|+|+...+- .+-..+.|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~-----------------~---~~~~kl~~~~~v~---------~~~~ai~~~ 116 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRE-----------------N---PKGAKLLDVSCVP---------KRPTAISFI 116 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEec-----------------C---CCcceeeeEeecc---------cCcceeeee
Confidence 45564 6777777776666555555421 1 1145555543221 222556666
Q ss_pred ccCCCeEEE--EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEe-ccCCC
Q 012410 270 EQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLL 344 (464)
Q Consensus 270 ~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl-~gH~~ 344 (464)
..+-.-+++ +++...+.+|.+..|.|. -.-||-..+..|++|||++.|+++. |..|||=..- ---+.+| -||..
T Consensus 117 ~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 117 REDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred eccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 643222333 468899999998885554 4457878899999999999999999 9999998863 2233333 48999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
. |..++..++ ++|+|||- |+||++||+.+|+||.++.-
T Consensus 196 F-----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 196 F-----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred h-----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccch
Confidence 8 888998876 55888875 99999999999999987743
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=99.85 Aligned_cols=290 Identities=12% Similarity=0.146 Sum_probs=172.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC----CCCcccceeecc--cc------CceEEEEeC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK----PDSGFALFESES--LK------WPGFVEFDD 195 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~----~~~~~~l~~~~~--~~------~~~~VaFs~ 195 (464)
..+.|-.|-|...|+.||+ |.-+ ||-+-..+-+..+ ...+++.|+.+. ++ -+..+++-+
T Consensus 24 eadiis~vef~~~Ge~Lat----Gdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLAT----GDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hhcceeeEEeecccceEee----cCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 4578999999999999999 3222 3555444434433 222344444321 11 111244432
Q ss_pred -CCCcEEEEecCCCcEEEEeCCCCeEEE---Eec----CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe-eCCcceeeE
Q 012410 196 -VNGKVLTYSAQDSIYKVFDLKNYTMLY---SIS----DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKV 266 (464)
Q Consensus 196 -pdGk~LaSgs~D~tiKlWdl~tg~~l~---tl~----~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V 266 (464)
-++-...-+..|+|||+|-+..-..-. .+. ...|.++..+--..+..- ++ -.|.+.+. .|.-++.++
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~---ve-a~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE---VE-ASPRRVYANAHTYHINSI 170 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce---ee-eeeeeeccccceeEeeee
Confidence 122223335679999999986433221 111 123434433211000000 01 33555555 345678999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCC-CcEE--EEcccCCC-----ceEEEEEcCCC-cEEEEEe-CCeEEEEeCC--Cc
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRN-AELM--EVSRTEFM-----TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE 334 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l--~~l~gh~~-----~v~sv~Fspdg-qllaS~s-D~TIklWd~~--Ge 334 (464)
.+..+ ...+.+.+|--|.||++.- .++. -..+.|.| -+++.-|+|.- .+|+=+| -|+|||-|++ .-
T Consensus 171 S~NsD--~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 171 SVNSD--KETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eecCc--cceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 98874 5556667899999999764 3333 23455544 46777799864 5566566 9999999985 33
Q ss_pred eE---EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEEccCCCC
Q 012410 335 LV---TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCS 403 (464)
Q Consensus 335 ~l---~tl~gH~~~~~~-------~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gh~~~ 403 (464)
|. +.|+.-..+... ..|..|-||++|++|+|-. --||||||+ ...+.+.+++-|...
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD------------yltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD------------YLTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec------------cceeEEEeccccCCcceEEeehHhH
Confidence 43 244433222110 1367899999999999863 389999999 778889999988740
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.+ +.++. .+.-+=..+.||-++..+.|||-...+|+.+
T Consensus 317 -r~kLc--------~lYEn----------D~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 317 -RSKLC--------SLYEN----------DAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred -HHHHH--------HHhhc----------cchhheeEEEEcCCcceEecccccceEEEec
Confidence 00010 10100 1112446789999999999999999999886
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-10 Score=116.78 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=142.2
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
-+-|-.+|..|+++...+.-. ..|..|.|.. +++++|-...+.+.||| ..|..++.++.| ..|..+.|+|.--+|
T Consensus 150 KGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LH--neq~~AVAQK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL 224 (545)
T KOG1272|consen 150 KGHLAAFDWVTKKLHFEINVM-ETVRDVTFLH--NEQFFAVAQKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLL 224 (545)
T ss_pred ccceeeeecccceeeeeeehh-hhhhhhhhhc--chHHHHhhhhceEEEec-CCCcEEeehhhc-Cchhhhcccchhhee
Confidence 345667788888887777532 5678899865 46666655567899999 899999999988 478889999999999
Q ss_pred EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 319 LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
++++ .|-.+-=|+ +|+++..|.--... +..+.-.|-...|-.|-. .|||-||.-...+.|.+
T Consensus 225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~G~-----~~vm~qNP~NaVih~Ghs-----------nGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 225 VAASEAGFLKYQDVSTGKLVASIRTGAGR-----TDVMKQNPYNAVIHLGHS-----------NGTVSLWSPNSKEPLVK 288 (545)
T ss_pred eecccCCceEEEeechhhhhHHHHccCCc-----cchhhcCCccceEEEcCC-----------CceEEecCCCCcchHHH
Confidence 9999 999999999 69999888755554 445666777777766653 89999999999999999
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|..|.+ .|.+||++|+|+++||.+.|..|+|||.
T Consensus 289 iLcH~g----------------------------------~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 289 ILCHRG----------------------------------PVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHhcCC----------------------------------CcceEEECCCCcEEeecccccceeEeee
Confidence 999987 8999999999999999999999999995
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=108.61 Aligned_cols=167 Identities=12% Similarity=0.094 Sum_probs=103.7
Q ss_pred CCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 273 NEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 273 ~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
...++. ...|+.|++|++.+-+---........+.++.+||||+-| .++. |-.|.+|.+ +-++.. ..++.
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~------~~~pK 133 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL------LPHPK 133 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE------ecccc
Confidence 355666 4799999999999888665555556788999999999554 5555 999999998 444332 11233
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
.++..++|+|||++.|-.+.-| .-.-+.|..-+.-+.++.+.-.+-...+.+-+|+|+.+| .|
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrD--------Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vw 196 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRD--------CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VW 196 (447)
T ss_pred cCceeEEECCCCceeeeeeccc--------HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Ee
Confidence 4578899999999999887521 011222221111122222222221112233444444322 12
Q ss_pred cccccc----c---cCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 429 STVGEA----L---EDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 429 ~~~~~~----l---~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.++-|. - -.|-.++|||-+|.||-||.||.+|+=
T Consensus 197 d~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 197 DNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred cchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 211111 1 268899999999999999999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-08 Score=97.69 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=117.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCC-Cc
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GE 334 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~-Ge 334 (464)
.+..+.++.+.+...|.++|-|-|--|||+++|.- ...|..|...|..++|+-+| ++|||.+ ||.||+.|++ -+
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 45577778887777888899999999999999854 45688999999999999765 5789989 9999999984 33
Q ss_pred eEE-EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccC
Q 012410 335 LVT-SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~-tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~ 411 (464)
--+ .+|+-+...+ .--+++++ |-.++|+-.. ....|-|-|+.. +.-++.|++|+.
T Consensus 231 HSTIIYE~p~~~~p---LlRLswnkqDpnymATf~~----------dS~~V~iLDiR~P~tpva~L~~H~a--------- 288 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTP---LLRLSWNKQDPNYMATFAM----------DSNKVVILDIRVPCTPVARLRNHQA--------- 288 (364)
T ss_pred cceEEecCCCCCCc---ceeeccCcCCchHHhhhhc----------CCceEEEEEecCCCcceehhhcCcc---------
Confidence 222 3344332212 33344444 3345555433 246688899864 567899999997
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
.|.++++.|.. ..|.|+++|..+-+||.
T Consensus 289 -------------------------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 -------------------------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred -------------------------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999965 57999999999999985
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-08 Score=97.92 Aligned_cols=170 Identities=8% Similarity=0.072 Sum_probs=120.2
Q ss_pred CEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCc-ceeeEEEEccCCCeEEEEeCCCeEEEEECCC-C----
Q 012410 228 HVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQENENLQILDVRN-A---- 293 (464)
Q Consensus 228 ~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~-~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g---- 293 (464)
.++.+|+++ ..|-+|++.|-.+ +|--.|++... .+.+++|-|.....++++.. +-|-||.+.. +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 355566654 4788999999876 77777875434 55999999976666666654 4577996542 1
Q ss_pred -------cEEEEcc--cCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 294 -------ELMEVSR--TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 294 -------~~l~~l~--gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
-+.++++ || ..|.+..+.+||-.++++| |..|.|||+ +|.++.--.--... +.-+-|||||+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg-----~slLkwSPdgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG-----FSLLKWSPDGD 251 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc-----eeeEEEcCCCC
Confidence 1334443 45 6899999999999999999 999999999 58775433111122 56789999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
+|..+.. |++.+||+. ++-.|.+-+-+.. .|..
T Consensus 252 ~lfaAt~-----------davfrlw~e~q~wt~erw~lgsg-----------------------------------rvqt 285 (445)
T KOG2139|consen 252 VLFAATC-----------DAVFRLWQENQSWTKERWILGSG-----------------------------------RVQT 285 (445)
T ss_pred EEEEecc-----------cceeeeehhcccceecceeccCC-----------------------------------ceee
Confidence 9999886 999999953 3334444332322 6788
Q ss_pred EEEcCCCCEEE
Q 012410 441 LFYDEERNEIY 451 (464)
Q Consensus 441 lafspDg~~La 451 (464)
-.+||+|..|.
T Consensus 286 acWspcGsfLL 296 (445)
T KOG2139|consen 286 ACWSPCGSFLL 296 (445)
T ss_pred eeecCCCCEEE
Confidence 88889988654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=96.16 Aligned_cols=216 Identities=10% Similarity=0.051 Sum_probs=142.9
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+..-||+ +|++.+|-+-+...+-|+.....++ -+...+|..|...+..|+
T Consensus 13 itchAwn-~drt~iAv~~~~~evhiy~~~~~~~-----------------------------w~~~htls~Hd~~vtgvd 62 (361)
T KOG1523|consen 13 ITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADL-----------------------------WEPAHTLSEHDKIVTGVD 62 (361)
T ss_pred eeeeeec-CCCceEEeccCCceEEEEEecCCCC-----------------------------ceeceehhhhCcceeEEe
Confidence 3467887 7999999888888888776543221 233455654446677788
Q ss_pred EEccCCCeEEEEeCCCeEEEEEC-CCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCC
Q 012410 268 FIEQFNEKLLVKQENENLQILDV-RNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv-~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~ 343 (464)
+.|. ..+|.+++.|.+-.+|.. ..|+-.. +|.-|.-....|-++|..+.||.+| -+.|-||-+++|-=-=-..|.
T Consensus 63 Wap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 63 WAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred ecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh
Confidence 8884 468999999999999998 4454332 3445677889999999999999999 999999998766311111222
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
..-....|.++.+.|++-+||.||. |+..|++.. -|++=...| ..++-|+...=+-+
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~-----------D~k~rVfSa-------yIK~Vdekp---ap~pWgsk~PFG~l-- 198 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGST-----------DGKCRVFSA-------YIKGVDEKP---APTPWGSKMPFGQL-- 198 (361)
T ss_pred CCccccceeeeeccCCcceeccccc-----------CcceeEEEE-------eeeccccCC---CCCCCccCCcHHHH--
Confidence 2111123889999999999999987 999999874 222222111 01111110000000
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
|....+.- .+|..|.|||+|+.||=.+.|.+|.+
T Consensus 199 m~E~~~~g----gwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 199 MSEASSSG----GWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred HHhhccCC----CceeeeEeCCCCCEeeEecCCCceEE
Confidence 00000111 18999999999999999999999875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-09 Score=73.88 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=37.7
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+|++++++|++ .|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~----------------------------------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS----------------------------------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS----------------------------------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC----------------------------------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 689999999997 999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-06 Score=87.91 Aligned_cols=246 Identities=13% Similarity=0.208 Sum_probs=143.5
Q ss_pred ccceeehhcc----CCeEEeeecccc-cEeeEeecC--CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 97 ARDIVFALAH----SGVCAAFSRETN-RRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 97 ag~~l~~l~~----~g~~~~~~~~~g-~~l~~ln~~--~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
.+++|.+..+ .|.+.+|.+... -.|..++.. ....--.|+++|+|+.|+++. ... .++.+..+.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van--y~~-------g~v~v~~l~ 117 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN--YGG-------GSVSVFPLD 117 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE--TTT-------TEEEEEEEC
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE--ccC-------CeEEEEEcc
Confidence 4666666665 568889986664 233333221 223345799999999998844 233 367777775
Q ss_pred c-CCCCCccccee---------eccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeE-EEEecCCCEeEEEEeCC
Q 012410 170 R-GKPDSGFALFE---------SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTM-LYSISDKHVQEIKIRSS 237 (464)
Q Consensus 170 ~-G~~~~~~~l~~---------~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~-l~tl~~~~V~~Vafs~s 237 (464)
. |.+......+. ...-.||-.|.|+ |||++|.... ....|.++++..... |.. +..+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-----~~~~~---- 187 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTP-----VDSIK---- 187 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-----EEEEE----
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEE-----eeccc----
Confidence 4 55432211121 0123677799997 8999776542 223577777765431 100 11111
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECC--CCcEE--E---Eccc---CCCce
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVR--NAELM--E---VSRT---EFMTP 306 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~--tg~~l--~---~l~g---h~~~v 306 (464)
+..| ..=+-++|+|+ +..+.+ ...+++|-++++. +|++. + ++.. ....+
T Consensus 188 ---------~~~G----------~GPRh~~f~pd-g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 188 ---------VPPG----------SGPRHLAFSPD-GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp ---------CSTT----------SSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred ---------cccC----------CCCcEEEEcCC-cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1111 12255677773 444434 4577888888877 55432 2 2211 12368
Q ss_pred EEEEEcCCCcEEEEEe--CCeEEEEeCC---CceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 307 SAFIFLYENQLFLTFR--NRTVAVWNFR---GELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 307 ~sv~FspdgqllaS~s--D~TIklWd~~---Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
..++++|||+.|..+. +.+|-+++++ |++. ..+.-...+ -+.++|+|||++|+.++. .
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s~~g~~l~Va~~----------~ 312 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFSPDGRYLYVANQ----------D 312 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-TTSSEEEEEET----------T
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEeCCCCEEEEEec----------C
Confidence 8999999999766665 8899999982 5543 233221122 368999999999999886 3
Q ss_pred CCeEEEEeC--CCCeEEEE
Q 012410 380 AGSINVSSI--LTGKCLAK 396 (464)
Q Consensus 380 DgtIklWdi--~tG~cl~t 396 (464)
+++|.++++ .||+...+
T Consensus 313 s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEe
Confidence 788999866 68875443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=92.51 Aligned_cols=237 Identities=8% Similarity=0.002 Sum_probs=135.7
Q ss_pred EeccceeehhccCC--eEEeeec-ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 95 VAARDIVFALAHSG--VCAAFSR-ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 95 ~~ag~~l~~l~~~g--~~~~~~~-~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
.+...+++...+.| .-++|=+ .+|...+.+..+ . .+-+-.|||||+.++..+.+.+.+ ..+.+.++.+|
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~------~~Iyv~dl~tg 223 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERK------PTLYKYNLYTG 223 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCC------CEEEEEECCCC
Confidence 44455555544333 2233311 356666655443 3 678999999999644433344333 57888899888
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
+.. ++.... +.....+|| |||+.|+.... ++. ..|-++|+.+|
T Consensus 224 ~~~---~lt~~~--g~~~~~~~S-PDG~~la~~~~~~g~------------------------------~~Iy~~dl~~g 267 (419)
T PRK04043 224 KKE---KIASSQ--GMLVVSDVS-KDGSKLLLTMAPKGQ------------------------------PDIYLYDTNTK 267 (419)
T ss_pred cEE---EEecCC--CcEEeeEEC-CCCCEEEEEEccCCC------------------------------cEEEEEECCCC
Confidence 763 222211 333357897 89988775432 221 12334445444
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-C--
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-N-- 323 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D-- 323 (464)
+. +.+...........|+| ++.+|+..+ ..+ .|.+.|+.+|+..+... +.. ...|||||+.||-.+ .
T Consensus 268 ~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCC
Confidence 42 22321111223456777 466666654 223 67788999998866543 322 247999999988776 3
Q ss_pred -----C--eEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 324 -----R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 324 -----~--TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+ .|-+-|+. |+ .+.|.... . ..+..|||||+.|+-.+. .+....+-+.++ +|+-..
T Consensus 342 ~~~~~~~~~I~v~d~~~g~-~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~--------~~~~~~L~~~~l-~g~~~~ 405 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDY-IRRLTANG-V-----NQFPRFSSDGGSIMFIKY--------LGNQSALGIIRL-NYNKSF 405 (419)
T ss_pred cccCCCCcEEEEEECCCCC-eEECCCCC-C-----cCCeEECCCCCEEEEEEc--------cCCcEEEEEEec-CCCeeE
Confidence 2 56666874 55 45565542 1 235789999998877654 122334667776 555444
Q ss_pred EE
Q 012410 396 KI 397 (464)
Q Consensus 396 tl 397 (464)
.|
T Consensus 406 ~l 407 (419)
T PRK04043 406 LF 407 (419)
T ss_pred Ee
Confidence 44
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=109.19 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=128.0
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCCCceEEEEEcC--CCcEEEEEe-CCeEEEE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklW 329 (464)
+.|++|.+-|..++|++ +|+.|++||+|--+-|||...-++++. -.||+.-|.++-|.| ..++++|+. |..|||.
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45778888899999998 477777789999999999999888875 469999999999997 467899999 9999999
Q ss_pred eCCC-----------ceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 330 NFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 330 d~~G-----------e~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
|++- +.+..+..|+.. |..||--|++ ..+-|+|+ |||||=.|+..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~r-----VKria~~p~~PhtfwsasE-----------DGtirQyDiRE------- 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDR-----VKRIATAPNGPHTFWSASE-----------DGTIRQYDIRE------- 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhh-----hhheecCCCCCceEEEecC-----------CcceeeecccC-------
Confidence 9841 235567789888 7789999998 78888775 99999999843
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.|...|.+...+. +.+-.++- -...+++.||... +||-|+.|-.+||+|
T Consensus 180 -ph~c~p~~~~~~~---------------l~ny~~~l-ielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 180 -PHVCNPDEDCPSI---------------LVNYNPQL-IELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred -CccCCccccccHH---------------HHHhchhh-heeeeeeecCCCCceEEecCCCchhhhhh
Confidence 3443333322111 11111111 1456799999775 789999999999987
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-06 Score=88.52 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=124.6
Q ss_pred eEEEEEeccCCCCCcccceeecccc-CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEe-------EE
Q 012410 162 STKIEYIRRGKPDSGFALFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQ-------EI 232 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~-~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~-------~V 232 (464)
.+.-.|..+|+. +|+...-. ....++.+ ++ .+..++.|+.+..+|.++|+.+.... ...+. ..
T Consensus 76 ~v~a~d~~tG~~-----~W~~~~~~~~~~~p~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~ 147 (377)
T TIGR03300 76 TVVALDAETGKR-----LWRVDLDERLSGGVGAD--GG-LVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGL 147 (377)
T ss_pred eEEEEEccCCcE-----eeeecCCCCcccceEEc--CC-EEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCE
Confidence 566667778875 33322111 11134442 44 55567889999999999999885543 12111 11
Q ss_pred EEeCCCceeEEEEEcCCCcEEEEEeeCCcce-----eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-----
Q 012410 233 KIRSSSHVPLKILSIEDGTVLKVFYHLLHRN-----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----- 302 (464)
Q Consensus 233 afs~s~d~tIklWdi~tG~~l~tl~~~~~~~-----~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh----- 302 (464)
.+-+..++.|..||.++|+.+..++...... -+... .++.++++..++.+..+|+.+|+.+-.....
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 2223567889999999999998876321110 11222 1367777888999999999999876432211
Q ss_pred CC--ceEEE---EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 303 FM--TPSAF---IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 303 ~~--~v~sv---~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
.. ....+ ....++.++++..++.+..+|. +|+.+-+.+.. .+ .+. ..++..|..++.
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~------~~p--~~~~~~vyv~~~-------- 287 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SY------QGP--AVDDNRLYVTDA-------- 287 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-Cc------cCc--eEeCCEEEEECC--------
Confidence 00 00001 0113455555444999999999 79988766521 11 112 224556655554
Q ss_pred cCCCCeEEEEeCCCCeEEEEE
Q 012410 377 EGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 377 ~s~DgtIklWdi~tG~cl~tl 397 (464)
||.|..+|..+|+.+...
T Consensus 288 ---~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ---DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---CCeEEEEECCCCcEEEcc
Confidence 899999999999987655
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.8e-09 Score=108.89 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=92.1
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
..+.|+-=|-+-.| .+...+|+| ++..|+.-|.|+.+||+|..+-+++-+.+.-+.....|.|||||+
T Consensus 278 ~~rNPv~~w~~~~g-----------~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 278 KTRNPVARWHIGEG-----------SINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccCCccceeEeccc-----------cccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc
Confidence 34567777777554 446778999 566666689999999999999999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+||+|+ |--|.||.+ +++.+..=+||..| |+.|+|-|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSW-----VSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccc-----eeeEeecc
Confidence 999999 999999999 69999999999999 89999985
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-06 Score=93.73 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=168.5
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEE---eecCCCCcccceeeEEEEEecc
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVS---VYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svS---a~~sddfs~L~~~ti~l~~i~~ 170 (464)
.|-.+-.+++.+.++.+.+++..++..+.+.+.. -++.+-|||-|.+|.+-= ...+.. -...-+.+|++++
T Consensus 41 ~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~---~~~pn~~v~~vet 114 (566)
T KOG2315|consen 41 AYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKN---ASNPNVLVYNVET 114 (566)
T ss_pred EEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCC---CCCCceeeeeecc
Confidence 3444777788889999999998888544444332 489999999999998721 111111 0114456899988
Q ss_pred CCCCCccc---------cee-----------ec----------------cccCceEEEEeCCCCc--EE-----EEecCC
Q 012410 171 GKPDSGFA---------LFE-----------SE----------------SLKWPGFVEFDDVNGK--VL-----TYSAQD 207 (464)
Q Consensus 171 G~~~~~~~---------l~~-----------~~----------------~~~~~~~VaFs~pdGk--~L-----aSgs~D 207 (464)
|.....++ -|. .+ +..++...++| |.++ .| .+.+.=
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lS-pgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLS-PGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEec-CCCCCceEEEEccCCCCCC
Confidence 66532111 011 00 12222235554 5432 11 123444
Q ss_pred CcEEEEeCCCCeE-----EEEec-CC-----------CEeEEEEeC------C--CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 208 SIYKVFDLKNYTM-----LYSIS-DK-----------HVQEIKIRS------S--SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 208 ~tiKlWdl~tg~~-----l~tl~-~~-----------~V~~Vafs~------s--~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
..+|||.+.-+.. .+++- .+ .+.-|+.+- + +..++.+.+++.-+|...|... ++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~-GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE-GP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC-CC
Confidence 5566665431110 01211 11 122222211 1 3468899999866677677643 78
Q ss_pred eeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeC-CCceE
Q 012410 263 NKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF-RGELV 336 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~-~Ge~l 336 (464)
|.+|.|++..-+.-++ |-.=-.+-|+|+ .|..+..+.. ..=..+-|+|.|++|+-++ -|.|.+||+ +-+|+
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 8999999953333333 447778889995 4555554432 2234667999999877765 679999999 78899
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
.+++.-. ..-..|+|||++++++..+ |-=| -|..||||+. ||..+.
T Consensus 350 ~~~~a~~-------tt~~eW~PdGe~flTATTa-PRlr----vdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 350 AKFKAAN-------TTVFEWSPDGEYFLTATTA-PRLR----VDNGIKIWHY-TGSLLH 395 (566)
T ss_pred cccccCC-------ceEEEEcCCCcEEEEEecc-ccEE----ecCCeEEEEe-cCceee
Confidence 8887543 2358899999999998762 2222 3899999997 888765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-06 Score=79.49 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=128.5
Q ss_pred eEEEEEeccCCCCCcccceeeccc-cCceEE--EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE-eEEEE--
Q 012410 162 STKIEYIRRGKPDSGFALFESESL-KWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV-QEIKI-- 234 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~-~~~~~V--aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V-~~Vaf-- 234 (464)
++..+|.++|+. +|+...- ...+.+ ++ +++..|..++.++.+..||.++|+.+-+.. ...+ .....
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 555667667775 4443220 122234 44 244456666899999999999999885544 1111 00111
Q ss_pred ----eCCCceeEEEEEcCCCcEEEEE-eeC-----CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC
Q 012410 235 ----RSSSHVPLKILSIEDGTVLKVF-YHL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 235 ----s~s~d~tIklWdi~tG~~l~tl-~~~-----~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
-...++.|..+|.+||+.+.+. ... ......+++ .++.++++..++.|..+|+++|+.+-....+..
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 1125569999999999999985 321 111123333 257888888899999999999999766544321
Q ss_pred c----------eEEEEEcCCCcEEEEEeCC-eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 305 T----------PSAFIFLYENQLFLTFRNR-TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 305 ~----------v~sv~FspdgqllaS~sD~-TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
. ..+-....++.++++..++ .+.+ |+ +|+.+-+..-+. +..+ ..+++..|+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~~-~~~~~~~l~~~~~---- 220 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYSL-PSVDGGTLYVTSS---- 220 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECEC-EECCCTEEEEEET----
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccCC-ceeeCCEEEEEeC----
Confidence 1 1233334466777766666 5888 99 688664333111 1221 4678888888875
Q ss_pred cccccCCCCeEEEEeCCCCeEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
|+.|..||+.||+.+.+
T Consensus 221 -------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 -------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -------TTEEEEEETTTTEEEEE
T ss_pred -------CCEEEEEECCCCCEEeE
Confidence 89999999999998754
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=91.97 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=148.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcEEEEecCCC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+.|.+-+||+|+..+|+ ++.. +.+.|......++-. +.++ .++-+.+..|.++ |.+..|+++++|.
T Consensus 11 ~pitchAwn~drt~iAv----~~~~------~evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWa-p~snrIvtcs~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAV----SPNN------HEVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDR 77 (361)
T ss_pred CceeeeeecCCCceEEe----ccCC------ceEEEEEecCCCCce--eceehhhhCcceeEEeec-CCCCceeEccCCC
Confidence 56999999999999988 7777 788888766555322 2333 1244556689997 8999999999999
Q ss_pred cEEEEeC-CCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 209 IYKVFDL-KNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 209 tiKlWdl-~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
.--||.. ..|+-..+| -| ..++ .-...|.++|. ..++++||.-+.|-+
T Consensus 78 nayVw~~~~~~~Wkptl------------------vL---------lRiN---rAAt~V~WsP~-enkFAVgSgar~isV 126 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTL------------------VL---------LRIN---RAATCVKWSPK-ENKFAVGSGARLISV 126 (361)
T ss_pred CccccccCCCCeeccce------------------eE---------EEec---cceeeEeecCc-CceEEeccCccEEEE
Confidence 9999986 333322121 11 1111 44578888884 568888999999999
Q ss_pred EECCCCcE----EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe----------------C---CCceEEEeccCC
Q 012410 288 LDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN----------------F---RGELVTSFEDHL 343 (464)
Q Consensus 288 WDv~tg~~----l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd----------------~---~Ge~l~tl~gH~ 343 (464)
|-.+.-+- .++-+.+..+|.++.+.|++-+||.|| |+..||.. - =|++...+...-
T Consensus 127 cy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG 206 (361)
T ss_pred EEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence 98665442 233345566789999999999999999 99999875 1 166676776667
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
.| |..|.|||+|..||=.+. |.+|.+=|-...
T Consensus 207 gw-----vh~v~fs~sG~~lawv~H-----------ds~v~~~da~~p 238 (361)
T KOG1523|consen 207 GW-----VHGVLFSPSGNRLAWVGH-----------DSTVSFVDAAGP 238 (361)
T ss_pred Cc-----eeeeEeCCCCCEeeEecC-----------CCceEEeecCCC
Confidence 78 889999999999998776 999999886433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-05 Score=74.69 Aligned_cols=211 Identities=14% Similarity=0.151 Sum_probs=142.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEe-CC------CceeEEEEEcCCCcEEEEEee--
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIR-SS------SHVPLKILSIEDGTVLKVFYH-- 258 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs-~s------~d~tIklWdi~tG~~l~tl~~-- 258 (464)
+..++|++-+|.++.+....+.|.-||..+++... +.......+++. ++ ....+.+.|.++|+....+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccC
Confidence 44788973388888888889999999998887643 222227777887 43 223456679999976655543
Q ss_pred ---CCcceeeEEEEccCCCeEEEEe-CC--------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CC
Q 012410 259 ---LLHRNKKVDFIEQFNEKLLVKQ-EN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NR 324 (464)
Q Consensus 259 ---~~~~~~~V~F~~~~~~~lla~s-~D--------~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~ 324 (464)
.......+++.++ +.+.++. .. +.|-.++.. ++...... ....+..++|+|||+.| ++-+ .+
T Consensus 81 ~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 2345588999885 5566643 22 456677766 66555443 35679999999999865 4556 88
Q ss_pred eEEEEeCC--Cc-e-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 325 TVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 325 TIklWd~~--Ge-~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
.|..++++ +. + +..+.+-... .-.+++.++|.+.++... .+.|.+.|.. |+.+..
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-----pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGY-----PDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCE-----EEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SCEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcC-----CCcceEcCCCCEEEEEcC-----------CCEEEEECCC-ccEEEE
Confidence 88888872 43 2 2223332211 347999999999887654 7899999964 999998
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEee
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 454 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-spDg~~LaSgs 454 (464)
+.--.. .+++++| -||.++|+-.+
T Consensus 220 i~~p~~----------------------------------~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 220 IELPVP----------------------------------RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EE-SSS----------------------------------SEEEEEEESTTSSEEEEEE
T ss_pred EcCCCC----------------------------------CEEEEEEECCCCCEEEEEe
Confidence 865432 7899999 58988887544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-08 Score=108.97 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=125.0
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-------EEEEcccCCCceEEEEEcCCCcE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l~gh~~~v~sv~Fspdgql 317 (464)
|+.+ |..+..|..|...+.+++-++.+...+++||.|||||+||.+.-+ +..+..-....+..+.+.+.|+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 7775 888888875545566777777666788889999999999976521 33344434568889999999999
Q ss_pred EEEEe-CCeEEEEeCC---C-----ceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEe
Q 012410 318 FLTFR-NRTVAVWNFR---G-----ELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 318 laS~s-D~TIklWd~~---G-----e~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+|.++ ||.|++-+++ + ++......|... +.|.--+|..+-+- ++.|.. .-+.|-.||
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g---~vv~m~a~~~~~~S~~lvy~T----------~~~~iv~~D 1179 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG---VVVSMHAFTAIVQSHVLVYAT----------DLSRIVSWD 1179 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCC---ceEEeecccccccceeEEEEE----------eccceEEec
Confidence 99999 9999999873 2 233333334332 33555566654443 444443 157899999
Q ss_pred CCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 388 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 388 i~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.+-.-+.+++..-. || .|+|++.+|-++.++.|..-|.+-+||+
T Consensus 1180 ~r~~~~~w~lk~~~~------------hG--------------------~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLR------------HG--------------------LVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred chhhhhHHhhhcCcc------------cc--------------------ceeEEEecCCceEEEEecCCceEEEEEe
Confidence 877666665544321 22 8999999999999999999999999995
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-07 Score=91.06 Aligned_cols=279 Identities=11% Similarity=0.101 Sum_probs=175.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
--+|-.+..++.+++|+..+-+--|.+.-+.+. +-++.+||||+-+...|.| + -.+.+|.+.+.+..
T Consensus 61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-ls~~~WSPdgrhiL~tseF---~------lriTVWSL~t~~~~--- 127 (447)
T KOG4497|consen 61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-LSSISWSPDGRHILLTSEF---D------LRITVWSLNTQKGY--- 127 (447)
T ss_pred eeeeeeeeccceEEEEEeecceeEEEeccCCCc-ceeeeECCCcceEeeeecc---e------eEEEEEEeccceeE---
Confidence 346677888999999999999999999776655 8899999999655555544 4 56788998776642
Q ss_pred cceeeccccCce----EEEEeCCCCcEEEEecCCCcEEEEeCCCCe---------EEEEec--CCCEeEEEEeCCCceeE
Q 012410 178 ALFESESLKWPG----FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---------MLYSIS--DKHVQEIKIRSSSHVPL 242 (464)
Q Consensus 178 ~l~~~~~~~~~~----~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---------~l~tl~--~~~V~~Vafs~s~d~tI 242 (464)
++.||- .++|. ||||+.|-++.- |-+.+- +++.+. +-....|-+||+ +.-+
T Consensus 128 ------~~~~pK~~~kg~~f~-~dg~f~ai~sRr------DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~l 193 (447)
T KOG4497|consen 128 ------LLPHPKTNVKGYAFH-PDGQFCAILSRR------DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWL 193 (447)
T ss_pred ------EecccccCceeEEEC-CCCceeeeeecc------cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-CcEE
Confidence 223333 69996 999999877653 333332 222222 223456677776 5668
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC----c------------------------
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----E------------------------ 294 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg----~------------------------ 294 (464)
-+||.----.+...+ -.-.++.|+++| .|+.|++|+.|+.+|+.|--+= |
T Consensus 194 aVwd~~Leykv~aYe-~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYE-RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEecchhhheeeeee-eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 888753222222222 113568899988 4677778999999987443221 1
Q ss_pred ----EE----------------------------EEcccC------CCceEEEEEcCCCcEEEEEeCC---eEEEEeCC-
Q 012410 295 ----LM----------------------------EVSRTE------FMTPSAFIFLYENQLFLTFRNR---TVAVWNFR- 332 (464)
Q Consensus 295 ----~l----------------------------~~l~gh------~~~v~sv~FspdgqllaS~sD~---TIklWd~~- 332 (464)
|+ +.++.- +..+--++||+|.+++||-.|. .+-|||++
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 11 111100 1124457999999999997644 78899995
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
-++-+.|... .. |....+.|..-.|+-.-. .-.+.+|-..--.|+.. .-.
T Consensus 352 l~l~avLiQk-~p-----iraf~WdP~~prL~vctg-----------~srLY~W~psg~~~V~v--P~~----------- 401 (447)
T KOG4497|consen 352 LKLHAVLIQK-HP-----IRAFEWDPGRPRLVVCTG-----------KSRLYFWAPSGPRVVGV--PKK----------- 401 (447)
T ss_pred hhhhhhhhhc-cc-----eeEEEeCCCCceEEEEcC-----------CceEEEEcCCCceEEec--CCC-----------
Confidence 5544444432 22 778888998877766532 23477887533233321 000
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
| - .|.+|.+.-+|..|+-.+.|.
T Consensus 402 G-F---------------------~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 402 G-F---------------------NIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred C-c---------------------eeeeEEecCCCcEEEEEcCCc
Confidence 0 1 577777888888777776664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-06 Score=84.56 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=155.7
Q ss_pred EeccceeehhccCCeEEeeecccccEeeEeecCCCceEE----------EEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~----------Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
+.+++.|.+.+.+|.+.++|..+|+.+-..+.....-+. ++.. .++.++. +..+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v----~~~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYI----GSEK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEE----EcCC------CEEE
Confidence 345888899999999999999999998877553311110 0111 2334444 2233 4666
Q ss_pred EEEeccCCCCCcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-C----------E--e
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-H----------V--Q 230 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-~----------V--~ 230 (464)
-.|.++|+. +|+...-+.+. +.... +|+++ .++.|+.+.-.|.+||+.+-..... . + .
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~-v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVL-VHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEE-EECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 678889986 34432111111 11221 56554 4677888999999999988665421 1 0 0
Q ss_pred EEEEeCCCceeEEEEEcCCCcEEEEEeeCCc-------ceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEcccC
Q 012410 231 EIKIRSSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 231 ~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~-------~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
...|-...++.+.-.|.++|+.+...+.... +...+.-.|. .++.+.+++.|+.+...|+.+|+.+-...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--
Confidence 0111124567788889999998876541100 0011111111 25778888899999999999998764322
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
...+..++. .++.+++...|+.+...|. +|+.+-....-..+. ..+.++ .+.+|..++. ||
T Consensus 284 ~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v--~~g~l~v~~~-----------~G 345 (394)
T PRK11138 284 YGSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL--YNGYLVVGDS-----------EG 345 (394)
T ss_pred CCCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE--ECCEEEEEeC-----------CC
Confidence 111112221 3555555555999999999 688765433211111 112222 2344555554 89
Q ss_pred eEEEEeCCCCeEEEEEcc
Q 012410 382 SINVSSILTGKCLAKINA 399 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~g 399 (464)
.|...|..||+.+.+.+-
T Consensus 346 ~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 346 YLHWINREDGRFVAQQKV 363 (394)
T ss_pred EEEEEECCCCCEEEEEEc
Confidence 999999999999987754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-06 Score=91.40 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=77.5
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-e--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
|.++|+.+|+....... ...+...+|+| ++.+++.. + .+..|.++|+.+|+..+...+. .....-.|+|||+.|
T Consensus 215 Iyv~dl~tg~~~~lt~~-~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~-~~d~~p~~SPDG~~I 291 (419)
T PRK04043 215 LYKYNLYTGKKEKIASS-QGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP-GIDVNGNFVEDDKRI 291 (419)
T ss_pred EEEEECCCCcEEEEecC-CCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC-CccCccEECCCCCEE
Confidence 34444444543332221 12334566777 45566553 2 3456778899999866543322 222344699999877
Q ss_pred EEEeC--C--eEEEEeCC-CceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 319 LTFRN--R--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 319 aS~sD--~--TIklWd~~-Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+=.+| + .|-+.|+. |+..+ ++.+. + ...|||||+.||-.+....++ .......|.+-|+.+|+
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~-------~~~~SPDG~~Ia~~~~~~~~~--~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N-------NSSVSTYKNYIVYSSRETNNE--FGKNTFNLYLISTNSDY 360 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCC--c-------CceECCCCCEEEEEEcCCCcc--cCCCCcEEEEEECCCCC
Confidence 66663 3 56677774 66533 33222 2 247999999998766411000 00011367777887776
Q ss_pred EEEEE
Q 012410 393 CLAKI 397 (464)
Q Consensus 393 cl~tl 397 (464)
- +.|
T Consensus 361 ~-~~L 364 (419)
T PRK04043 361 I-RRL 364 (419)
T ss_pred e-EEC
Confidence 3 444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=99.34 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=114.1
Q ss_pred EeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-----cEEEEcccCC
Q 012410 229 VQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-----ELMEVSRTEF 303 (464)
Q Consensus 229 V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-----~~l~~l~gh~ 303 (464)
+..-.|+...+..|-|-|++||- .+.|. ...-|+...|.- .+..+..|..+|.|-..|++.+ .|.+.+- |.
T Consensus 223 i~gyhfs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~ 298 (425)
T KOG2695|consen 223 IMGYHFSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD 298 (425)
T ss_pred cceeeecccccceeEEEEeeccc-ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cC
Confidence 44445566788889999999883 34454 225567777754 2344455779999999999986 4555544 55
Q ss_pred CceEEEEEcC-CCcEEEEEe-CCeEEEEeCC-Cce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 304 MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 304 ~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~-Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..|.++-.+. ++|.|++++ +++|+|||.+ -+| +++.+||.+-+. =.-+-+.|....|+|+++
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a---~l~~~v~~eeg~I~s~Gd--------- 366 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA---YLPAHVKEEEGSIFSVGD--------- 366 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc---ccccccccccceEEEccC---------
Confidence 6777777666 888888888 9999999985 666 999999977432 123556778888888876
Q ss_pred CCCCeEEEEeCCCCeEEEEEcc
Q 012410 378 GSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~g 399 (464)
|...|||.+..|+.+.++.-
T Consensus 367 --DcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 367 --DCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred --eeEEEEEecccCceeeccCC
Confidence 99999999999999999854
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=69.81 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=37.3
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|+|+++|++|... |++|+|+|++.+|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999998 999999999999999997 99999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-06 Score=86.18 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=141.4
Q ss_pred EEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc-ccCceEEEEeCCCCcEEEEe-----
Q 012410 132 IRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES-LKWPGFVEFDDVNGKVLTYS----- 204 (464)
Q Consensus 132 i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~-~~~~~~VaFs~pdGk~LaSg----- 204 (464)
-..++.+|... .++. ..-+|.-..++|.++|+....+.-=...+ .+ =..|| |||++|.+.
T Consensus 7 gH~~a~~p~~~~avaf---------aRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG---Hg~fs-~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAF---------ARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG---HGVFS-PDGRLLYTTENDYE 73 (305)
T ss_pred ccceeeCCCCCeEEEE---------EeCCCcEEEEEEcCCCceeeEEcCCCCCEEec---CEEEc-CCCCEEEEeccccC
Confidence 34567788443 3333 12455788889999999764221111111 22 37797 899998764
Q ss_pred cCCCcEEEEeCC-CCeEEEEecCCCE--eEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC-CeEEEEe
Q 012410 205 AQDSIYKVFDLK-NYTMLYSISDKHV--QEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQ 280 (464)
Q Consensus 205 s~D~tiKlWdl~-tg~~l~tl~~~~V--~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~-~~lla~s 280 (464)
+..+.|-|||+. +++-+-.++...| .+|.+.|+ |+-|..-++-.++ .|+.+ .+|=...
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD------------G~tLvVANGGI~T------hpd~GR~kLNl~t 135 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD------------GETLVVANGGIET------HPDSGRAKLNLDT 135 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC------------CCEEEEEcCCCcc------CcccCceecChhh
Confidence 346789999998 7777777765544 45555544 5444444421111 13222 2343456
Q ss_pred CCCeEEEEECCCCcEEEE--c--ccCCCceEEEEEcCCCcEEEEEe-CC-------eEEEEeCCCceEEEeccCCC-C-c
Q 012410 281 ENENLQILDVRNAELMEV--S--RTEFMTPSAFIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL-W-H 346 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~--l--~gh~~~v~sv~FspdgqllaS~s-D~-------TIklWd~~Ge~l~tl~gH~~-~-~ 346 (464)
.+-++-..|..+|++++. | ..|...++=++..+||..+...- .+ -|-+++ .|+.++.+..-.. | -
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRR 214 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHh
Confidence 777888899999999986 6 55888999999999998776654 32 234444 2333333332110 0 0
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
..-.+-||+|++||.++|..|- .-+.+-+||..||+++...
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsP----------rGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSP----------RGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECC----------CCCEEEEEECCCCCEeecc
Confidence 0002789999999999987774 4799999999999998865
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-05 Score=75.27 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=129.6
Q ss_pred CCcEEEEeCCCCeEEEEecC----CCEe--EE-----EEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSISD----KHVQ--EI-----KIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~----~~V~--~V-----afs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+++|..||+++|+.+-+..- .... .+ .|-.+.++.|..||+.||+.+.++... ..+...... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~--~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVV--DGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeee--cccc
Confidence 67888999999998865431 1111 11 122357889999999999999888742 222111122 3578
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEc-ccCC---CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDC 349 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l-~gh~---~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~ 349 (464)
+++...|+.|..+|..+|+.+-.. .... ..........++..++.+. ++.|...|. +|+.+-....+..... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS-S 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC-c
Confidence 888888889999999999988763 3221 1111222333366666666 999999998 7999888876542210 0
Q ss_pred C------eeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccc
Q 012410 350 N------TNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 350 ~------v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
. ...-.+..++.++++.. ++ .+.+ |+.+|+.+.... -.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~------------~g~~~~~-d~~tg~~~w~~~-~~--------------------- 202 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSG------------DGRVVAV-DLATGEKLWSKP-IS--------------------- 202 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECC------------TSSEEEE-ETTTTEEEEEEC-SS---------------------
T ss_pred ceeeecccccceEEECCEEEEEcC------------CCeEEEE-ECCCCCEEEEec-CC---------------------
Confidence 0 12333334555555433 55 5788 999999765433 11
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+.+ ...+++..|+.++.|+.|..||.
T Consensus 203 --------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 203 --------------GIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp ---------------ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred --------------CccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 2222 25688999999999999999983
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=97.81 Aligned_cols=226 Identities=10% Similarity=0.160 Sum_probs=161.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC------CC----------------------cc
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP------DS----------------------GF 177 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~------~~----------------------~~ 177 (464)
+.+.+.-..+..+|||+++.+++.|.+ .|+++|+..=-+ +. +.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP---------~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKP---------QIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCC---------ceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCcee
Confidence 456777899999999999999887765 455555532111 00 11
Q ss_pred cceeec----cccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCce
Q 012410 178 ALFESE----SLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHV 240 (464)
Q Consensus 178 ~l~~~~----~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~ 240 (464)
..|... ...-|. .++++.|+-.++.-|+.+..||+ +|+.|..|..+. ...++.|.+++ ..++
T Consensus 119 efHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRl-NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRL-NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred eehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEE-EccccccccccccccccceeeeecCccceEEecccCc
Confidence 111100 011111 35666677777777777777776 999999998877 47899999986 3689
Q ss_pred eEEEEEcCCCcEEEEEeeCCc-----------ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLH-----------RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSA 308 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~-----------~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~s 308 (464)
.|..||-.+-....+|.-..+ .|.++.|.- ++=.+++|..+|.+-|+|+++.+.+-+-. +....+..
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence 999999999888888863211 367888855 34567778899999999999999876543 23357778
Q ss_pred EEEcCC--CcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 309 FIFLYE--NQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 309 v~Fspd--gqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.|.+. +..++|..-+++||||- +|+....++--.. ++.+++-|++-++..+-.
T Consensus 277 l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~------lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD------LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ecccccCCCceEEecchHHhhhcccccCCceeeccccCC------cCceeeecCCceEEEecC
Confidence 889765 45566666789999998 7999888875433 789999999999998854
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-05 Score=78.75 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
-|+|| ||+..||++..-++|+|+|+. |..|+.++... .+..+ + ..-+-.+.|.
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~----~~~~d---------~------------~~Aiagl~Fl 100 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDLM-GSELFVIPPAM----SFPGD---------L------------SDAIAGLIFL 100 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEecc-cceeEEcCccc----ccCCc---------c------------ccceeeeEee
Confidence 69998 999999999999999999984 57777765210 01100 0 0122222332
Q ss_pred ccC-----CCeEEEEeCCCeEEEEECCCC-----cEEEE---cccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCCCc
Q 012410 270 EQF-----NEKLLVKQENENLQILDVRNA-----ELMEV---SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGE 334 (464)
Q Consensus 270 ~~~-----~~~lla~s~D~tIkIWDv~tg-----~~l~~---l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~Ge 334 (464)
+.- ...|++=..+|.++=+-|..| +..++ ...+...|.++++.|.-++|+.|+ ...-..+...
T Consensus 101 ~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-- 178 (282)
T PF15492_consen 101 EYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-- 178 (282)
T ss_pred ccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc--
Confidence 221 124555566666665554322 22222 234567899999999999888776 3321122211
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
=.|=+.|. -+.=+|.-+.+.++-+ +...+ -.+-.+|.+.+.+..- .++.
T Consensus 179 ----~~GLtaWR------iL~~~Pyyk~v~~~~~-----~~~~~-~~~~~~~~~~~~~~fs-~~~~-------------- 227 (282)
T PF15492_consen 179 ----SCGLTAWR------ILSDSPYYKQVTSSED-----DITAS-SKRRGLLRIPSFKFFS-RQGQ-------------- 227 (282)
T ss_pred ----ccCceEEE------EcCCCCcEEEccccCc-----ccccc-ccccceeeccceeeee-cccc--------------
Confidence 01111121 1112333333322210 00000 1233455554433211 1111
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
....|..+..||||+.||+-..+|.|-||+.
T Consensus 228 -------------------~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 228 -------------------EQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred -------------------CCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 1128999999999999999999999999974
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=109.63 Aligned_cols=202 Identities=17% Similarity=0.211 Sum_probs=151.2
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEe--eCCcceee
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFY--HLLHRNKK 265 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~--~~~~~~~~ 265 (464)
+.|+..+.+.-+.+.--|..+-+..+..-+-++|..+.=+ .+.|+.|++|..-.|+.+.++. +. .+|..
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr 2256 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTR 2256 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhh
Confidence 4556666677777776676654433222112233333323 3689999999999999999888 33 78889
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeC--CC--ceEE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF--RG--ELVT 337 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~--~G--e~l~ 337 (464)
..|+.+ |++..++-.||-|-+|.+. -+..-..+-|......|.|.- .++|+++ ++.+-+||. .+ -|+.
T Consensus 2257 ~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 999996 7888999999999999965 445556677888888999987 6677753 789999995 33 3566
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
..|... +..+++-|..++|+||++ +|-|+|||+...|.+++++.
T Consensus 2333 --~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~------------------ 2376 (2439)
T KOG1064|consen 2333 --TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA------------------ 2376 (2439)
T ss_pred --eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh------------------
Confidence 667666 678999999999999998 99999999988887776643
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+ ...++++|+..|.|++|+.
T Consensus 2377 -------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 -------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred -------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4578999999999999974
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-07 Score=99.76 Aligned_cols=294 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCC--CEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN--DSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g--~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..-..+.-.|.=|++++.-|..-+.=..-+.+-..|--.....|-.+-+||.- ++-|+ +... +..-+|
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV----sts~------qkaiiw 96 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV----STSN------QKAIIW 96 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE----ecCc------chhhhh
Confidence 33344445577777777777433321133333333322222334444444421 22222 1222 445578
Q ss_pred EeccCCCCC-cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDS-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+++.-.-.+ .|-+|.. ..-+..+.|.+.+-.+||+++.|..+-.||+.. -+.|+..|
T Consensus 97 nlA~ss~~aIef~lhgh--sraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~p~ys~ 154 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGH--SRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHRPFYST 154 (1081)
T ss_pred hhhcCCccceEEEEecC--ccceeccccCCCCCcceeeccccccceeeeccC--------------------CCcceeee
Confidence 875433222 1333332 132335778766777999999999999999863 34555555
Q ss_pred EcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcC--CCcEEEEE
Q 012410 246 SIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLY--ENQLFLTF 321 (464)
Q Consensus 246 di~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~Fsp--dgqllaS~ 321 (464)
+.- ++. ..|.++.- +..+++++..+.|.+||.+-|- .+..+++|...|.+++|.. .+. +.+.
T Consensus 155 ~~w~s~a------------sqVkwnyk-~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~-~~s~ 220 (1081)
T KOG0309|consen 155 SSWRSAA------------SQVKWNYK-DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE-IMSS 220 (1081)
T ss_pred ecccccC------------ceeeeccc-CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh-hccc
Confidence 542 232 33444442 4678899999999999999865 6788999998999999983 444 4455
Q ss_pred e-CCeEEEEeCC---CceEEEeccCCCCcCCCCeeEEEECCCCC--EEEE-EecCCCccccccCCCCeEEEEeCCCC-eE
Q 012410 322 R-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIIS-YCKAEPEDQWMEGSAGSINVSSILTG-KC 393 (464)
Q Consensus 322 s-D~TIklWd~~---Ge~l~tl~gH~~~~~~~~v~svafSpDg~--~LaS-gs~~~~~~~~~~s~DgtIklWdi~tG-~c 393 (464)
+ |+|||.||.+ -|--++..-.. .||--.|.|=|+ +|.= -+. +.-...-.+..-+.||+.++ +-
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~------piw~~r~~Pfg~g~~~mp~~G~---n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNF------PIWRGRYLPFGEGYCIMPMVGG---NMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred CCCCceeeecccccccccceeccccC------cceeccccccCceeEeccccCC---eeeeeccccchhhhhccccCCcc
Confidence 5 9999999962 22222222111 144444555332 2110 000 00000112556678998887 67
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC--CEEEEeeCCCcEEecc
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg--~~LaSgs~DgtVrlWd 463 (464)
+++|.||++-|.+. +|....+ ..|+-|. =.|+|=|.|.++|||-
T Consensus 292 Vh~F~GH~D~V~eF-------------------lWR~r~e-------~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEF-------------------LWRKRKE-------CDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eeeecCcchHHHHH-------------------hhhhccc-------ccCCCCccceeEEEeecCCceEeee
Confidence 99999999732211 1222211 1122222 2589999999999994
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-06 Score=84.90 Aligned_cols=305 Identities=14% Similarity=0.188 Sum_probs=171.4
Q ss_pred cceeehhccCCeEEeeecccccE----eeEeecCCC------------ceEEEEEEeeCCCE-EEEEEeecCCCCcccce
Q 012410 98 RDIVFALAHSGVCAAFSRETNRR----ICFLNVSPD------------EVIRSLFYNKNNDS-LITVSVYASDNFSSLKC 160 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~----l~~ln~~~~------------~~i~Sv~fs~~g~~-l~svSa~~sddfs~L~~ 160 (464)
|+.||+++..|-+-+|.+.+-.. ..+.-.+|+ +.|..+.+-+++.. ....| ..|
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls---tNd------ 107 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS---TND------ 107 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe---cCC------
Confidence 99999999999999997554332 111112222 23445555554432 22222 445
Q ss_pred eeEEEEEeccCCCCC------------c-----ccc---------------eeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 161 RSTKIEYIRRGKPDS------------G-----FAL---------------FESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~------------~-----~~l---------------~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+|+++|-|.....-. + .+. +...|.-|++++.++ .|++++.| +.|-
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lS-ADdL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLS-ADDL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEee-ccce
Confidence 799999884322211 0 011 111134456677886 57777775 4566
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
-|-||+++- .+..-.=|.+.|.. ++.++--+.+-.|+|.....++=++..|+|||-
T Consensus 186 RINLWnlei-------~d~sFnIVDIKP~n-----------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 186 RINLWNLEI-------IDQSFNIVDIKPAN-----------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeeeccccc-------cCCceeEEEccccC-----------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 777887651 11111111122210 001111224555777544445557889999999
Q ss_pred ECCCCc-EEE---Ecc---c---------CCCceEEEEEcCCCcEEEEEeCCeEEEEeC--CCceEEEeccCCC------
Q 012410 289 DVRNAE-LME---VSR---T---------EFMTPSAFIFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLL------ 344 (464)
Q Consensus 289 Dv~tg~-~l~---~l~---g---------h~~~v~sv~FspdgqllaS~sD~TIklWd~--~Ge~l~tl~gH~~------ 344 (464)
|++..- |.. .+. . --..|+.|-||+.|++++|=.=-||||||+ +.+.+.|..-|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 999643 221 111 0 113467788999999999876679999998 4778888877753
Q ss_pred --CcCCC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCC--CCcc----cccCCC
Q 012410 345 --WHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCS--PKVD----DELGSS 413 (464)
Q Consensus 345 --~~~~~--~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~--~~~~----~~~~~~ 413 (464)
+-.|| .-..++||-|+.++++||. ..-.++.++..|. --.++.+.... |... ..++.|
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy-----------~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g 390 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSY-----------NNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSG 390 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccc-----------cceEEEecCCCCcceeecccccccCCcccccccceeeecCC
Confidence 11222 1245889999999999998 7889999976664 23444443321 1111 000011
Q ss_pred CCCcccccccccccccccccccc---CEEEEEEcCCCCEEEEeeCCCc
Q 012410 414 STGKSKKLNKSSYIRSTVGEALE---DITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~---~V~slafspDg~~LaSgs~Dgt 458 (464)
.+ ..-++ -..+|+ .+.-.+|+|.-+.||.+.....
T Consensus 391 ~r-------~~~~~---~vd~ldf~kkilh~aWhp~en~ia~aatnnl 428 (433)
T KOG1354|consen 391 KR-------KRDEI---SVDALDFRKKILHTAWHPKENSIAVAATNNL 428 (433)
T ss_pred Cc-------ccccc---ccchhhhhhHHHhhccCCccceeeeeecCce
Confidence 10 00000 112222 4556788999999999877654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=97.81 Aligned_cols=165 Identities=12% Similarity=0.147 Sum_probs=119.3
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|..-.+|+|.|+|||||.++. ..|. +.|..|.-|.+.|...+.++-|.++ .-
T Consensus 746 NENSFiSASkDKTVKLWSik~-------------------EgD~------~~tsaCQfTY~aHkk~i~~igfL~~---lr 797 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKP-------------------EGDE------IGTSACQFTYQAHKKPIHDIGFLAD---LR 797 (1034)
T ss_pred cccceeeccCCceEEEEEecc-------------------ccCc------cccceeeeEhhhccCcccceeeeec---cc
Confidence 555677889999999998752 1111 3356677787766678888888873 22
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcc---cCCCceEEEEE--cCCCcEEEEE-e-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 277 LVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIF--LYENQLFLTF-R-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~F--spdgqllaS~-s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
-+.|.|+-|.+||.--|.++.... .| ..+..+-- +-|..++..+ + ..|||+.|. .++.+..++--...-|+
T Consensus 798 ~i~ScD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 798 SIASCDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eeeeccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 345779999999999998775321 12 12222222 3356666666 4 899999999 59988888766555566
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
..++.++.-|.|+.||.+=. .|+|-+-|..+|+.+..++.-.
T Consensus 877 a~~R~iaVa~~GN~lAa~LS-----------nGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALS-----------NGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred hheeEEEeccCcchhhHHhc-----------CCcEEEEecCCCceeccCCccc
Confidence 66899999999999998743 8999999999999888776544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=75.41 Aligned_cols=228 Identities=10% Similarity=0.139 Sum_probs=138.9
Q ss_pred eeEEEEEe--ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC
Q 012410 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS 238 (464)
Q Consensus 161 ~ti~l~~i--~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~ 238 (464)
+.|..|++ .+|++....... ..+-|..++|+ ||++.|-++-.++. ...|-+.+|-+ .
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~---~~~nptyl~~~-~~~~~LY~v~~~~~----------------~ggvaay~iD~-~ 74 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVA---ELGNPTYLAVN-PDQRHLYVVNEPGE----------------EGGVAAYRIDP-D 74 (346)
T ss_pred CceEEEEEeCcccccchhhhcc---ccCCCceEEEC-CCCCEEEEEEecCC----------------cCcEEEEEEcC-C
Confidence 67888888 466654322222 34567799997 89999988765532 12233333322 2
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEE--cccCCCc---------
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV--SRTEFMT--------- 305 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~--l~gh~~~--------- 305 (464)
|+.+.+.+-.+ +.+ +.-.-|++.++ +..++++. .-+.|.+.-++. |.+... ..-|...
T Consensus 75 ~G~Lt~ln~~~------~~g--~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~ 145 (346)
T COG2706 75 DGRLTFLNRQT------LPG--SPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP 145 (346)
T ss_pred CCeEEEeeccc------cCC--CCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC
Confidence 34444433221 111 12145666663 45566655 568888887765 544322 1123222
Q ss_pred -eEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 306 -PSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 -v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+-..-|.|||++|++.. --.|-++++ +|.+...=+-+. -+.+-=+-|+|+|+|++.-.-++ -++
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~E----------L~s 213 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNE----------LNS 213 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEec----------cCC
Confidence 66788999999999987 335789999 688754222221 12333467999999999887776 389
Q ss_pred eEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 382 SINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 382 tIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
||-+|..... .-+..|+-+...|.... |.. +.-+|..+|||+.||..++
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~----g~~---------------------~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFT----GTN---------------------WAAAIHISPDGRFLYASNR 263 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccC----CCC---------------------ceeEEEECCCCCEEEEecC
Confidence 9999998773 55666766665443211 111 5667889999999998764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-05 Score=82.04 Aligned_cols=254 Identities=12% Similarity=0.085 Sum_probs=156.9
Q ss_pred ehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 102 ~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
+.+..+..+.++.........+.+.+.+..+..+.+||.|..|++ .. - +.|.+|+-..+.. +..
T Consensus 5 F~~~~s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~----~~-~------~~V~~~~g~~~~~-----l~~ 68 (561)
T COG5354 5 FPLDYSAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFS----EH-A------AGVECWGGPSKAK-----LVR 68 (561)
T ss_pred eeeeccceEEEeecCccccccccccccCcchhheeecCcchheeh----hh-c------cceEEccccchhh-----eee
Confidence 345666677777656666667775668889999999999999988 22 2 5777887544432 222
Q ss_pred eccccCce--EEEEeCCCCcEEEEecCCC---------------cEEEEeCCCCeEEEEec--CCC--Ee-EEEEeCCC-
Q 012410 182 SESLKWPG--FVEFDDVNGKVLTYSAQDS---------------IYKVFDLKNYTMLYSIS--DKH--VQ-EIKIRSSS- 238 (464)
Q Consensus 182 ~~~~~~~~--~VaFs~pdGk~LaSgs~D~---------------tiKlWdl~tg~~l~tl~--~~~--V~-~Vafs~s~- 238 (464)
+.||. .+.|| |+|++|.+=+.-. .+.|||.++|..+.++. ... .| -+.||.++
T Consensus 69 ---~~~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 69 ---FRHPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred ---eecCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch
Confidence 13333 79998 9999999876533 48999999999998876 222 55 67777642
Q ss_pred ------ceeEEEEEcCCCcEEE----EEeeCCcceeeEEEEccCCCe-EEE-----EeCCCeEEEEECCCCcEEEEcccC
Q 012410 239 ------HVPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQFNEK-LLV-----KQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 239 ------d~tIklWdi~tG~~l~----tl~~~~~~~~~V~F~~~~~~~-lla-----~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
-..++|.++ |+..-. ++. ...+..-.|+|-.+.. |+. +..+.+++||.+-.+..+.+-.
T Consensus 145 y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-- 219 (561)
T COG5354 145 YVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-- 219 (561)
T ss_pred hhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--
Confidence 235777776 443221 111 0223444455542222 222 3578999999988666544311
Q ss_pred CCceE--EEEEcCCCcEEEEEe------------CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPS--AFIFLYENQLFLTFR------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~--sv~FspdgqllaS~s------------D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
...+. .+-+.+.|..|+.-- ..+.-|.++++.-+....+-.+. |-+.+|+|+++.++..+.
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEec
Confidence 11122 344667777665311 23566777765444433343444 788999999987765541
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
-.+.++.+.|+ .|+...
T Consensus 295 ---------~~pa~~s~~~l-r~Nl~~ 311 (561)
T COG5354 295 ---------YMPASVSVFDL-RGNLRF 311 (561)
T ss_pred ---------ccccceeeccc-ccceEE
Confidence 12788999997 455433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=90.02 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=100.2
Q ss_pred EEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEE-EEe---cCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 190 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML-YSI---SDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 190 ~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l-~tl---~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
+|+++ +.+. ++-+-..+...|+||....--- ..+ ....=--|+-..++.+.+++|++..|.+.-++- |...+.
T Consensus 78 Av~~~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG-hvSml~ 155 (390)
T KOG3914|consen 78 AVATS-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG-HVSMLL 155 (390)
T ss_pred EEEeC-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh-hhhhhh
Confidence 67776 5665 4455666667888886432211 011 111111122234677889999998887776664 447779
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
.|+++|+ ++.|+++-.|+.||+-..-.---++ ..-||...|..++. .++++|+|+| |+|+++||. +|+++.+|.
T Consensus 156 dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl-~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 156 DVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL-TDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeecCC-CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee-ccCceeeecCCCCcEEEEecccCCcccccc
Confidence 9999995 5777888899999985433322333 34689999998854 5666788988 999999999 699998876
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.5e-06 Score=83.88 Aligned_cols=282 Identities=11% Similarity=0.082 Sum_probs=157.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC----CCcccceeecc--c------cCceEEEEe
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP----DSGFALFESES--L------KWPGFVEFD 194 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~----~~~~~l~~~~~--~------~~~~~VaFs 194 (464)
...+.|.+|-|-.-|.+|++ |..+ ||.+-..+-..-.| .-.|+.|+.+. + .-+..+++-
T Consensus 24 tead~ItaVefd~tg~Ylat----GDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 24 TEADKITAVEFDETGLYLAT----GDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred cccceeeEEEeccccceEee----cCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 45678999999999999999 3222 23332222111111 11244444321 1 112235544
Q ss_pred CCCCc--EEEEecCCCcEEEEeCCCCeEEEEecCCCE-eEEEEe-------C--------C-CceeEEEEEcCCCcEEEE
Q 012410 195 DVNGK--VLTYSAQDSIYKVFDLKNYTMLYSISDKHV-QEIKIR-------S--------S-SHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 195 ~pdGk--~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V-~~Vafs-------~--------s-~d~tIklWdi~tG~~l~t 255 (464)
++.|+ .|. +..|+|||||.+..-.+ +....++. .++.++ + + .|.-|.. -.|..-
T Consensus 95 ~~t~r~hFLl-stNdktiKlWKiyeknl-k~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvy 167 (460)
T COG5170 95 DDTGRNHFLL-STNDKTIKLWKIYEKNL-KVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVY 167 (460)
T ss_pred cCCCcceEEE-ecCCceeeeeeeecccc-hhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-----ccceec
Confidence 44443 455 46899999999865432 11111111 111111 0 1 2222211 011111
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cE--EEEcccCCC-----ceEEEEEcCCCcEEE-EEe-CCe
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-EL--MEVSRTEFM-----TPSAFIFLYENQLFL-TFR-NRT 325 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~--l~~l~gh~~-----~v~sv~Fspdgqlla-S~s-D~T 325 (464)
-+-|..++.++.|..+ ...+.+++|-.|.||++.-- .| +-..+.|.+ -+.+.-|+|..-.+. -++ -|+
T Consensus 168 aNaH~yhiNSiS~NsD--~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 168 ANAHPYHINSISFNSD--KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred cccceeEeeeeeecCc--hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1223356789999774 55666778999999997652 23 334566654 466778998765443 334 999
Q ss_pred EEEEeCC--CceE---EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-Ce
Q 012410 326 VAVWNFR--GELV---TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GK 392 (464)
Q Consensus 326 IklWd~~--Ge~l---~tl~gH~~~~~~-------~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~ 392 (464)
|||-|++ .-|. ++|+.....+.- ..|..+-|||+|++|+|-+ --||+|||+.. .+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------------yltvkiwDvnm~k~ 313 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------------YLTVKIWDVNMAKN 313 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------------cceEEEEecccccC
Confidence 9999984 3332 233322211100 0266789999999999875 58999999865 57
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
|++|+.-|... +.++.. -...+.-.=.-+.||-|.+.+.|||-...
T Consensus 314 pikTi~~h~~l--------------------~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 314 PIKTIPMHCDL--------------------MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred CceeechHHHH--------------------HHHHHhhhhccceeeeEEEEecCCcccccccccccc
Confidence 99999888741 001100 00112224456889999999999986544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-07 Score=96.51 Aligned_cols=169 Identities=11% Similarity=0.203 Sum_probs=120.0
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-------CcEEEEcccCCCceEEEEEcCCCcEEEEEeCCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-------g~~l~~l~gh~~~v~sv~FspdgqllaS~sD~T 325 (464)
|..|.+|...++.++-+. ....++++|.|+|+|+|.++. ..|.-+.+.|...+.++-|..|.+.++|. |+-
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cCc
Confidence 445666666777777554 234667789999999998865 34888999999999999999999988654 899
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 404 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~ 404 (464)
|.|||- .|+++...++..---...+|..+ =+-|..+++.||. ...|||+.|...++-...++-.+. |
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcs----------aeSTVKl~DaRsce~~~E~kVcna-~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCS----------AESTVKLFDARSCEWTCELKVCNA-P 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec-ccCcchheeeecc----------chhhheeeecccccceeeEEeccC-C
Confidence 999997 79988755432211000112211 1226777777765 378999999988887777765532 0
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.+ .-+.+++.-|.|+.||.|-..|+|-+-|
T Consensus 874 -~Pn---------------------------a~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 874 -GPN---------------------------ALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred -CCc---------------------------hheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 001 1578899999999999999999887644
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=94.74 Aligned_cols=273 Identities=14% Similarity=0.152 Sum_probs=172.1
Q ss_pred cccccCCccccccchhhhhhccccceee--------eecCCCCCcccchhhhccccceEEEEeccceeehhccCCeEEee
Q 012410 42 EICSKRDRAFSISNAQERFRNMHLVEEY--------DTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAF 113 (464)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~ 113 (464)
.++.+-++-|++...-+-=|+|-|-.-+ |-|.|+-.|.++-|..-... ......|.++-+.-..++.--+|
T Consensus 18 slsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~-qws~h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADV-QWSPHPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred eeEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcce-ecccCCCCceeEEecCcchhhhh
Confidence 3455555555444443334555554433 55667777777766533332 22334455555444444444456
Q ss_pred ec--ccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce-
Q 012410 114 SR--ETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG- 189 (464)
Q Consensus 114 ~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~- 189 (464)
+. ...+.|-++--+|...|..+.|+|.. +.|++ .+.| -.+..||++.-.. +.... ...+.+
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat----csvd------t~vh~wd~rSp~~----p~ys~-~~w~s~a 161 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT----CSVD------TYVHAWDMRSPHR----PFYST-SSWRSAA 161 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceee----cccc------ccceeeeccCCCc----ceeee-ecccccC
Confidence 53 35677777777899999999999875 56777 4455 4666788765443 22222 112222
Q ss_pred -EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEecC--CCEeEEEE---------eCCCceeEEEEEcCCCcEE--E
Q 012410 190 -FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISD--KHVQEIKI---------RSSSHVPLKILSIEDGTVL--K 254 (464)
Q Consensus 190 -~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~~--~~V~~Vaf---------s~s~d~tIklWdi~tG~~l--~ 254 (464)
.|+++-.|+.+||| +...-|.+||+.-| ..|.++++ ..|.+++| +++.|+|||.||-+.-+.- +
T Consensus 162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 58888789999985 56778999999865 46677774 35677777 5789999999998743322 2
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCC-eE---------EEEECCCC-cEEEEcccCCCceEEEEEcC--------CC
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENE-NL---------QILDVRNA-ELMEVSRTEFMTPSAFIFLY--------EN 315 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~-tI---------kIWDv~tg-~~l~~l~gh~~~v~sv~Fsp--------dg 315 (464)
+.. ..-.++.-.|.|...+.++.-+..+ .+ +.|++.++ +.++++.||.+.|-.|-|-- |.
T Consensus 241 ~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 241 TVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred ecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCc
Confidence 222 1246688888885456666543222 22 35777775 47899999999887665532 22
Q ss_pred c--EEEEEe-CCeEEEEeCC
Q 012410 316 Q--LFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 316 q--llaS~s-D~TIklWd~~ 332 (464)
+ .|+|=| |.++|+|-+.
T Consensus 320 rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cceeEEEeecCCceEeeecc
Confidence 2 588988 9999999863
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0003 Score=72.31 Aligned_cols=277 Identities=17% Similarity=0.161 Sum_probs=151.4
Q ss_pred CCeEEeeeccc--ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe--ccCCCCCcccceee
Q 012410 107 SGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFES 182 (464)
Q Consensus 107 ~g~~~~~~~~~--g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i--~~G~~~~~~~l~~~ 182 (464)
++-|..|++.+ |+.-..-......-..=|+++|+++.|-++-..+.++ .|--..| ..|.+-.--.-...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g-------gvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG-------GVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC-------cEEEEEEcCCCCeEEEeeccccC
Confidence 45566666442 2211111122333355688999998888855222122 2222333 33665211011111
Q ss_pred ccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
-..|..|++| ++|++|.++.. -+.|.|.-+++ |.+... |+.++ .+|.--. -+...
T Consensus 88 --g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-----v~~~~--------------h~g~~p~-~rQ~~ 144 (346)
T COG2706 88 --GSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPV-----VQVVK--------------HTGSGPH-ERQES 144 (346)
T ss_pred --CCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccc-----eeeee--------------cCCCCCC-ccccC
Confidence 1334689997 89999998875 34566655532 333211 11111 0111000 01111
Q ss_pred cceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcc---cCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-
Q 012410 261 HRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR- 332 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~- 332 (464)
.++..+.|.|+ +..+++. +.| .|.++++..|.+-..-. .....++-++|.|+|+..-.-. ++||-+|..+
T Consensus 145 ~h~H~a~~tP~-~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 145 PHVHSANFTPD-GRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CccceeeeCCC-CCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 33567778884 4555554 366 46699999888654322 2336789999999999887776 9999999984
Q ss_pred --Cc--eEEE---ecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCC
Q 012410 333 --GE--LVTS---FED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 401 (464)
Q Consensus 333 --Ge--~l~t---l~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~ 401 (464)
|+ ++++ |.. -..| .-.|.+||||++|...-. + ..+|-++.+.. |.-|..+.-+.
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~-----~aaIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNW-----AAAIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred CCceEEEeeeeccCccccCCCCc-----eeEEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEec
Confidence 33 2222 211 1124 568999999999987543 2 33666665532 22244332222
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC-cEEe
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG-LVHV 461 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg-tVrl 461 (464)
. +.. .=....|+|+|+.|+.+++|. +|.+
T Consensus 288 t---eg~----------------------------~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 288 T---EGQ----------------------------FPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred c---CCc----------------------------CCccceeCCCCCEEEEEccCCCcEEE
Confidence 1 111 224578899999999888654 3444
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=100.09 Aligned_cols=156 Identities=12% Similarity=0.169 Sum_probs=123.2
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
.|+.+.|+...-.|. ....++|+.||.|++|....++-+-+++. -...|...+|+.+|..+.-+- ||.+-+|...-+
T Consensus 2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 355677777776674 56789999999999999988987766542 237889999999999999888 999999999888
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC-eEEEEEccCCCCCCcccccC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG-KCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG-~cl~tl~gh~~~~~~~~~~~ 411 (464)
...+.+.|.-. .....|-. .++|+++. .+.++.+.+||.. .+ -|+. .+|..
T Consensus 2284 ~~~s~qchnk~-----~~Df~Fi~--s~~~tag~--------s~d~~n~~lwDtl~~~~~s~v~--~~H~~--------- 2337 (2439)
T KOG1064|consen 2284 PYTSWQCHNKA-----LSDFRFIG--SLLATAGR--------SSDNRNVCLWDTLLPPMNSLVH--TCHDG--------- 2337 (2439)
T ss_pred ceeccccCCcc-----ccceeeee--hhhhcccc--------CCCCCcccchhcccCcccceee--eecCC---------
Confidence 88888888776 44555643 77787765 2457899999953 12 2333 45554
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.++.++|-|.-|.|.||+.+|.|.|||.
T Consensus 2338 -------------------------gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2338 -------------------------GATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred -------------------------CceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 8899999999999999999999999983
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00095 Score=64.62 Aligned_cols=219 Identities=14% Similarity=0.137 Sum_probs=127.9
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEe-eCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYN-KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs-~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
|.+.++=...+.+..|+..+++.. .+.. +. ..++++. ++|..+++ . .. .+.+.|..+|+...-
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~-~~~~-~~--~~G~~~~~~~g~l~v~-~---~~--------~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVE-VIDL-PG--PNGMAFDRPDGRLYVA-D---SG--------GIAVVDPDTGKVTVL 75 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEE-EEES-SS--EEEEEEECTTSEEEEE-E---TT--------CEEEEETTTTEEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeEE-EEec-CC--CceEEEEccCCEEEEE-E---cC--------ceEEEecCCCcEEEE
Confidence 666666666778888886655543 3323 22 6788888 67655555 2 22 334458777765321
Q ss_pred ccceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 177 FALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 177 ~~l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
....... ....|+.++|+ |+|.+.++.+......-.+ .+.|-.++.. |++...
T Consensus 76 ~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~------------------------~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGID------------------------PGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGG------------------------SEEEEEEETT-SEEEEE
T ss_pred eeccCCCcccCCCceEEEc-CCCCEEEEecCCCcccccc------------------------ccceEEECCC-CeEEEE
Confidence 1111111 33456689997 8998777655432210000 0222223333 343333
Q ss_pred EeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC--CCcEE--E---EcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAELM--E---VSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~--tg~~l--~---~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+.+ ......++|+|+ +..|.+. +..+.|.-+|+. +++.. + .+.+....+-.+++..+|++.++.. .+.|
T Consensus 130 ~~~-~~~pNGi~~s~d-g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 130 ADG-LGFPNGIAFSPD-GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EEE-ESSEEEEEEETT-SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred ecC-cccccceEECCc-chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE
Confidence 332 244578888884 4455554 577888888875 33221 2 2233334588999999999999877 8999
Q ss_pred EEEeCCCceEEEeccCCCCcCCCCeeEEEE-CCCCCEEEE
Q 012410 327 AVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIIS 365 (464)
Q Consensus 327 klWd~~Ge~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaS 365 (464)
.+.|.+|+++..++--... +.+++| -||.+.|.-
T Consensus 208 ~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 208 VVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEE
T ss_pred EEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEE
Confidence 9999999999888755333 679999 578676654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00021 Score=75.90 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=157.6
Q ss_pred cceeehhccCCeEEeeec-ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC--
Q 012410 98 RDIVFALAHSGVCAAFSR-ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-- 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~-~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-- 174 (464)
+.+-++-+++|.=.+|++ +.|+-|+--..-++. ..-..|.||+.++- +.. ..|.+.|-.+-.+-
T Consensus 236 ~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY--Y~R~~nsDGkrIvF----q~~-------GdIylydP~td~lekl 302 (668)
T COG4946 236 ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY--YPRNANSDGKRIVF----QNA-------GDIYLYDPETDSLEKL 302 (668)
T ss_pred ceEEEEecccCccceEEeccCCchhhhcCCchhc--cccccCCCCcEEEE----ecC-------CcEEEeCCCcCcceee
Confidence 456677888888888864 356655432121333 33345677876644 222 34555554333331
Q ss_pred -Ccccceee-c---cccCceEEE-EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------CCce
Q 012410 175 -SGFALFES-E---SLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS--------SSHV 240 (464)
Q Consensus 175 -~~~~l~~~-~---~~~~~~~Va-Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~--------s~d~ 240 (464)
-++++... + .....-+++ |+..+|.++|.-|.- ..-|.+...|--+..-+...|+-..|.. ..|+
T Consensus 303 dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred ecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC
Confidence 12333311 1 011111455 777899998877654 3445555445445444455677666643 2444
Q ss_pred -eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 241 -PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 241 -tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
.|-|+|.++|+. +.++..+..+.+|.-++ ++.+++++-....|-+.|+.||+....-+.+..-+..++++|+++.||
T Consensus 382 D~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 382 DKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred ceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence 789999998765 45555568999999887 455566677778888899999998888788888999999999999999
Q ss_pred EEe-C----CeEEEEeCC-CceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 320 TFR-N----RTVAVWNFR-GELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 320 S~s-D----~TIklWd~~-Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
-+- + +.|||.|.. |+.. +|=.+|. .+=||-|||++|-==
T Consensus 460 YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D--------fsPaFD~d~ryLYfL 506 (668)
T COG4946 460 YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD--------FSPAFDPDGRYLYFL 506 (668)
T ss_pred EecCcceeeeeEEEEecCCCeEEEecCCcccc--------cCcccCCCCcEEEEE
Confidence 865 4 489999995 5653 3433442 467899999988543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-05 Score=76.69 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=77.9
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEE-cccCCCceEEEEEc-CCCcEEEEEe-CCeEEEEe
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~-l~gh~~~v~sv~Fs-pdgqllaS~s-D~TIklWd 330 (464)
+.+.|.-+.|...|+...++.+.+||+|+.+.-||++ .++++.. .+-|.+.|.++--| |++..++||+ |-+|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 4554445678899988877778889999999999999 6777765 67799999998766 6788999999 99999999
Q ss_pred CC--CceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 331 FR--GELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 331 ~~--Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
.+ |+.+..-.-- .. ||-+.-+|-
T Consensus 240 tRnm~kPl~~~~v~-GG-----VWRi~~~p~ 264 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVG-GG-----VWRIKHHPE 264 (339)
T ss_pred hhcccCccccCccc-cc-----eEEEEecch
Confidence 84 8876422211 22 888988884
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0031 Score=73.30 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=158.0
Q ss_pred cceeehhcc------CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 98 RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 98 g~~l~~l~~------~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
|+++|+.+- ...+++|+++ |+...+- ..-+.+-.+++|.|.|..+|++-. .+++ +.|-++. +.|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~VvFfE-rNG 290 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNLIASSQR-LPDR------HDVVFFE-RNG 290 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCEEEEEEE-cCCC------cEEEEEe-cCC
Confidence 666665553 3589999955 8755544 456677889999999998888553 2333 4555544 666
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-E-EEec---CCCEeEEEEeCCCceeEEEEE
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L-YSIS---DKHVQEIKIRSSSHVPLKILS 246 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l-~tl~---~~~V~~Vafs~s~d~tIklWd 246 (464)
--.+.|.+-....-..+..++++ +|+.+||---.|. |.||-..||.- | +.+. ...+..+.|+|..-.++.++.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 66555544321111223489997 8999999877665 99999999984 2 2443 233445777776666666665
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccC---CCeEEEEeCCCeEEEEECCCCc-----EEEEcccCCCceEEEEEcCCCcEE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~---~~~lla~s~D~tIkIWDv~tg~-----~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
-. |+... . +..+.+++++.. +.-+++-=+..+++|=.++... |...+.-. ..|.+|+|++++..+
T Consensus 369 ~~-g~~~~-~----~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 369 SN-GQYEI-Y----DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRF 441 (928)
T ss_pred cC-CcEEE-E----EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeE
Confidence 42 33322 1 223556554321 1112222245677777766654 22333322 478999999999878
Q ss_pred EEEe-CCeEEEEeCC-Cc--------eEEEeccC-----CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 319 LTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 319 aS~s-D~TIklWd~~-Ge--------~l~tl~gH-----~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|.-. |++|.+|... .. +..++..+ ......-.+..++|-.+..+++..+. ...-..|
T Consensus 442 avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i 513 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS--------DSNQSKI 513 (928)
T ss_pred EEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec--------CcccceE
Confidence 8877 9999999952 21 11122211 11111123567888877777766553 1124677
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
-++++.
T Consensus 514 ~~~~~~ 519 (928)
T PF04762_consen 514 VLVDID 519 (928)
T ss_pred EEEEec
Confidence 788763
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-05 Score=81.07 Aligned_cols=241 Identities=16% Similarity=0.188 Sum_probs=162.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
|.+.|.-|+-+. -+++++||.+++-+||+... ..-+..+. +...|++-..+++-+ .||-...|.+.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~-isGvEfVK----------hFraHL~~I~sl~~S-~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSR-ISGVEFVK----------HFRAHLGVILSLAVS-YDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCC-ccceeehh----------hhHHHHHHHHhhhcc-ccceeEeeccCc
Confidence 777777777766 57899999888888877653 11112211 111122222255555 79999999777
Q ss_pred CCcEEEEeCCCCeEEEEe-----c---------CCCEeEEEEeCCCceeEEEEEcCCCcEEE-EEe-eCCcceeeEEEEc
Q 012410 207 DSIYKVFDLKNYTMLYSI-----S---------DKHVQEIKIRSSSHVPLKILSIEDGTVLK-VFY-HLLHRNKKVDFIE 270 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl-----~---------~~~V~~Vafs~s~d~tIklWdi~tG~~l~-tl~-~~~~~~~~V~F~~ 270 (464)
|+.+|++|+.+..++.-+ + +..+..||++.-.++-|-+.|-.-+-|.. -+. -|..+|..+..++
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence 999999999987765322 2 24467788876667777777765433332 232 3457788888777
Q ss_pred cCCCeEEEEeCCCeEEEEECCC------CcEEEEccc---------CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 271 QFNEKLLVKQENENLQILDVRN------AELMEVSRT---------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~t------g~~l~~l~g---------h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
- ++..++.-..|.|.-|...- +++.--++. -...+.++.|||+|..+++.+ |++|++.++ +|
T Consensus 155 a-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 155 A-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred c-ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 4 44445555779999998652 111111111 234688999999999999999 999999999 78
Q ss_pred ceEEEec--------------------------------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 334 ELVTSFE--------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 334 e~l~tl~--------------------------------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
++++.++ .|..-+ -..+.|-..|++|+=|+. =
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~----~~~~~fdes~~flly~t~------------~ 297 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV----GTNAVFDESGNFLLYGTI------------L 297 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc----cceeEEcCCCCEEEeecc------------e
Confidence 8765443 343322 245779999999987764 3
Q ss_pred eEEEEeCCCCeEEEEEc
Q 012410 382 SINVSSILTGKCLAKIN 398 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~ 398 (464)
-||+-|+.|+.|.+.|-
T Consensus 298 gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 298 GIKVINLDTNTVVRILG 314 (558)
T ss_pred eEEEEEeecCeEEEEec
Confidence 49999999999999884
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00096 Score=69.43 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=127.5
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~S-v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
..++.|...+.+|.+.++|..||+.+-..+.. .. +.+ -... +| .+++. ..+ ..+.-.|.++|+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~-~~ssP~v~-~~-~v~v~----~~~------g~l~ald~~tG~~- 182 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GE-ALSRPVVS-DG-LVLVH----TSN------GMLQALNESDGAV- 182 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCC-Cc-eecCCEEE-CC-EEEEE----CCC------CEEEEEEccCCCE-
Confidence 34677777888999999999999999887553 23 222 1221 33 34431 222 3566667778875
Q ss_pred CcccceeeccccC------ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C----C---CEe---------
Q 012410 175 SGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D----K---HVQ--------- 230 (464)
Q Consensus 175 ~~~~l~~~~~~~~------~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~----~---~V~--------- 230 (464)
+|+.+.-.. ..+-... +|. +..++.|+.+...|.++|+.+-... . . ...
T Consensus 183 ----~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 183 ----KWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred ----eeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 333211000 0111121 343 3345667788888888888764332 0 0 001
Q ss_pred -EEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceE
Q 012410 231 -EIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPS 307 (464)
Q Consensus 231 -~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~ 307 (464)
...|-.+.++.+.-+|.++|+.+.+... .....+.. .++.+.+.+.|+.+..+|..+|+.+-... .+.. ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL-LT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc-cc
Confidence 1111123567888899999998876542 11122222 35788889999999999999998754221 1111 11
Q ss_pred EEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEecc
Q 012410 308 AFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 308 sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~g 341 (464)
+.+ ..+|.+++...|+.|.+.|. +|+.+...+-
T Consensus 330 sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 330 APV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 111 13666665544999999999 7999887653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8e-05 Score=76.31 Aligned_cols=248 Identities=13% Similarity=0.161 Sum_probs=148.4
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe-ccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i-~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.|..+ .+|.+.|...-.-|--+.+++ .|+| +++|||-= ..||.-....++-. .-+...+|. ++-
T Consensus 16 ll~~~-eG~~d~vn~~~l~~~e~gv~~----~s~d------rtvrv~lkrds~q~wpsI~~~mP---~~~~~~~y~-~e~ 80 (404)
T KOG1409|consen 16 LLSKI-EGSQDDVNAAILIPKEEGVIS----VSED------RTVRVWLKRDSGQYWPSIYHYMP---SPCSAMEYV-SES 80 (404)
T ss_pred hhhhh-cCchhhhhhheeccCCCCeEE----cccc------ceeeeEEeccccccCchhhhhCC---CCceEeeee-ccc
Confidence 34556 457788999888888888999 5578 99999963 23443221111111 112256665 566
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
..|.-|=..+++.-+.+ +-+ .+.-..++...-|..++..+-|+.. .+.+++
T Consensus 81 ~~L~vg~~ngtvtefs~-------------------sed---------fnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s 131 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFAL-------------------SED---------FNKMTFLKDYLAHQARVSAIVFSLT-HEWVLS 131 (404)
T ss_pred eEEEEEEecceEEEEEh-------------------hhh---------hhhcchhhhhhhhhcceeeEEecCC-ceeEEE
Confidence 56655544444432222 111 0001111222223467777778763 578888
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---CCceEEEeccCCCCcCCCCeeEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
.+.|+.+.=-=.++|.-+ .++.+.-.+.+.-.|=...--|- -+.|.+--+ .-.++.++.||... +.++
T Consensus 132 ~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~-----~~~l 203 (404)
T KOG1409|consen 132 TGKDKQFAWHCTESGNRL---GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE-----VTCL 203 (404)
T ss_pred eccccceEEEeeccCCcc---cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc-----eEEE
Confidence 888888753333334322 11111100000000000011111 223333322 35678999999987 8899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
.+.|...+|.||+. |..|-+|||--++- ...++||.+
T Consensus 204 ~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~------------------------------- 241 (404)
T KOG1409|consen 204 KWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND------------------------------- 241 (404)
T ss_pred EEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh-------------------------------
Confidence 99999999999986 99999999965443 356789986
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|.+-+--+.|.|+++||.|.+|++
T Consensus 242 ---kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 242 ---KVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ---hhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 7888888888899999999999999985
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0032 Score=66.23 Aligned_cols=304 Identities=12% Similarity=0.113 Sum_probs=139.9
Q ss_pred ecccccEeeEeecCCCceEEE-----EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 114 SRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 114 ~~~~g~~l~~ln~~~~~~i~S-----v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
|..||.++..|...+.. -.+ =.|.+||+.|+-+|.+.. . +...+-|+++|+..+ ++.+.-...
T Consensus 16 D~~TG~~VtrLT~~~~~-~h~~YF~~~~ft~dG~kllF~s~~dg-~------~nly~lDL~t~~i~Q----LTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGH-SHRLYFYQNCFTDDGRKLLFASDFDG-N------RNLYLLDLATGEITQ----LTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE-S-TTS--EE---TTS--B-TTS-EEEEEE-TTS-S-------EEEEEETTT-EEEE-------SS-B-T
T ss_pred CCCCCceEEEecCCCCc-ccceeecCCCcCCCCCEEEEEeccCC-C------cceEEEEcccCEEEE----CccCCCCCc
Confidence 34566665555432221 111 145788999988775432 2 677777888888742 222100001
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEecCCCEeEEEEeC------------------------------
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIRS------------------------------ 236 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~~~~V~~Vafs~------------------------------ 236 (464)
..... .|+.+.|.+-....+++--||+|.+ ++|.+++.++-...+.+
T Consensus 84 ~g~~~-s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 84 FGGFL-SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp TT-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred cceEE-ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 11223 3788898887666788888999876 46888877665555532
Q ss_pred --CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCC-eEEEEECCC-CcEEEEcccCCCceE--
Q 012410 237 --SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPS-- 307 (464)
Q Consensus 237 --s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~-tIkIWDv~t-g~~l~~l~gh~~~v~-- 307 (464)
..+..|.--|+.||+.-..+... .+..-+.|+|.++..|+-+- .|. +-|||=+.+ |.-.+-+..|....+
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 13356677799999987777643 67778999997665555543 444 347775544 333333333322111
Q ss_pred EEEEcCCCcEEEE-----Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc-----
Q 012410 308 AFIFLYENQLFLT-----FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW----- 375 (464)
Q Consensus 308 sv~FspdgqllaS-----~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~----- 375 (464)
==-|+|||..|.= ++ +..|.=.|. +|+--.. .+..| ..-...++||+++|-=+...|-+-+
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 1128899987654 22 446666777 5654322 12223 2356678999999764431222211
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-Eee
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGN 454 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs 454 (464)
...+|.-|.|+++++++-. .|--|.. +|+......+.+. --+.|||||+.++ +..
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~~---------------------sw~v~~~~~q~~h--Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHDT---------------------SWKVLDGDRQVTH--PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEEE-
T ss_pred eecCCcEEEEeccccCcee-eeeeccC---------------------cceeecCCCccCC--CCCccCCCCCEEEEECC
Confidence 1124568889999887753 3444542 1111111111122 3479999999754 556
Q ss_pred CCCcEEec
Q 012410 455 RHGLVHVW 462 (464)
Q Consensus 455 ~DgtVrlW 462 (464)
..|...|+
T Consensus 371 ~~G~~~vY 378 (386)
T PF14583_consen 371 MEGPPAVY 378 (386)
T ss_dssp TTSS-EEE
T ss_pred CCCCccEE
Confidence 67765553
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00069 Score=69.62 Aligned_cols=220 Identities=10% Similarity=0.119 Sum_probs=137.7
Q ss_pred cceeehhccCCeEEeee-cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~-~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
-+-|..++.+.++++|- +..||.-..+-......++++.|+++-..|.. +-++ .++.-..+ .-.++.
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v----g~~n------gtvtefs~-sedfnk- 103 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV----GQDN------GTVTEFAL-SEDFNK- 103 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE----EEec------ceEEEEEh-hhhhhh-
Confidence 46678899999999995 22455433333334456888888888777766 3344 22222221 111111
Q ss_pred ccceeeccccCce---EEEEeCCCCcEEEEecCCCcEEEEe-CCCCeEE--EEec---CC--CEeEEEEeCCCceeEEEE
Q 012410 177 FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFD-LKNYTML--YSIS---DK--HVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWd-l~tg~~l--~tl~---~~--~V~~Vafs~s~d~tIklW 245 (464)
.++....+.|.. .+-|+. --..+.|.+.|+.+ .|- .+.|+.| |.+. .. ..-..+|-.+..++|.+.
T Consensus 104 -m~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 104 -MTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred -cchhhhhhhhhcceeeEEecC-CceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 111111223333 578874 44567788889876 554 4455554 3332 11 122266655555555555
Q ss_pred EcC--CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIE--DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~--tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
.++ .=..+.+++++...+.+..+.+. ++.|.++..|..+-+||+--++-+ ..+.+|.+.|.++...+--+.+.|.+
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence 443 33455677777788899999773 455556789999999998876654 47889999999998777777777877
Q ss_pred -CCeEEEEeCCC
Q 012410 323 -NRTVAVWNFRG 333 (464)
Q Consensus 323 -D~TIklWd~~G 333 (464)
|+-|-+||.+-
T Consensus 260 edg~i~~w~mn~ 271 (404)
T KOG1409|consen 260 EDGGIVVWNMNV 271 (404)
T ss_pred CCCeEEEEeccc
Confidence 99999999643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=66.81 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=130.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-----------c
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-----------G 176 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-----------~ 176 (464)
+..-+||+.+++....... ...+....+||+|+.++-+. + +-+.+.++.+|+..+ |
T Consensus 23 ~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEEES
T ss_pred eeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEEcC
Confidence 4677888777654443322 45678899999999998855 2 245555554553311 1
Q ss_pred ccce--eeccccCceEEEEeCCCCcEEEEecCCC-cEEEEeCCCCeEEEEecCC----CEeEEEEeC----CCceeEEEE
Q 012410 177 FALF--ESESLKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLKNYTMLYSISDK----HVQEIKIRS----SSHVPLKIL 245 (464)
Q Consensus 177 ~~l~--~~~~~~~~~~VaFs~pdGk~LaSgs~D~-tiKlWdl~tg~~l~tl~~~----~V~~Vafs~----s~d~tIklW 245 (464)
.+.| +.|.++....+-|| |||+.||....|. .|+.+.+ ....... .+..++++- .....+.|+
T Consensus 90 ~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~-----~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPL-----PDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEE-----EEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred ccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEe-----eccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 1111 11235555589998 9999999876653 3333322 2222222 366777742 233567778
Q ss_pred EcCCCcEEE-EEe----eCCcceeeEEEEccCCCeEEEE--eCC---CeEEEEECCCCcEEEEccc----CCCceEEEEE
Q 012410 246 SIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QEN---ENLQILDVRNAELMEVSRT----EFMTPSAFIF 311 (464)
Q Consensus 246 di~tG~~l~-tl~----~~~~~~~~V~F~~~~~~~lla~--s~D---~tIkIWDv~tg~~l~~l~g----h~~~v~sv~F 311 (464)
|+++|+... ... ...+-+..|.|+++ +.++++. ..+ -.+.+.|+.+|++...... .-.....+.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 164 DLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp ESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred ECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 999998642 221 12245588999885 3436653 333 4456789999887544322 2222235666
Q ss_pred c-CCCcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCe-eEEEECCCCCEEE
Q 012410 312 L-YENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLII 364 (464)
Q Consensus 312 s-pdgqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v-~svafSpDg~~La 364 (464)
. +++..++-.+ ||--.|+-+ +|...+-|+.. .|. | ..+.++++++.|.
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIY 296 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEE
Confidence 5 7777666655 886666654 67777766644 342 5 4578889888765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=50.32 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 437 DITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.017 Score=61.89 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=76.7
Q ss_pred eEEEEEcCCCcEEEEEe-CC-eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~-TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|+=..++-+++-++-|- |+ .+-|+|.+|-.++.+++...- |.++..+|||+.++-+-. -.-|
T Consensus 362 VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~-----I~av~vs~dGK~~vvaNd-----------r~el 425 (668)
T COG4946 362 VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN-----IEAVKVSPDGKKVVVAND-----------RFEL 425 (668)
T ss_pred eEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccc-----eEEEEEcCCCcEEEEEcC-----------ceEE
Confidence 34344555556666676 77 888999876667777777665 899999999999888754 5667
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----CcE
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLV 459 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gtV 459 (464)
-+-|+.||+.-- +.- + +- .-|+..++||++..||=+=-+ +.|
T Consensus 426 ~vididngnv~~-idk-S---------~~-----------------------~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 426 WVIDIDNGNVRL-IDK-S---------EY-----------------------GLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEEEecCCCeeE-ecc-c---------cc-----------------------ceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 777998887422 211 1 10 168899999999999966444 457
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
||.|+
T Consensus 472 klydm 476 (668)
T COG4946 472 KLYDM 476 (668)
T ss_pred EEEec
Confidence 77764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=80.81 Aligned_cols=251 Identities=13% Similarity=0.168 Sum_probs=140.6
Q ss_pred eeeeecCCCCCcccchhhhccccceEEEEec----cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCC
Q 012410 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (464)
Q Consensus 67 ~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a----g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~ 142 (464)
-||.-|+++-.+...|.- ..+|.+|-.. .+-..+...+.++++|. .-.+.|.-+ +.+.+--+ |.+|-|.
T Consensus 67 teFQshe~EFDYLkSlei---eEKin~I~w~~~t~r~hFLlstNdktiKlWK-iyeknlk~v--a~nnls~~-~~~~~~g 139 (460)
T COG5170 67 TEFQSHELEFDYLKSLEI---EEKINAIEWFDDTGRNHFLLSTNDKTIKLWK-IYEKNLKVV--AENNLSDS-FHSPMGG 139 (460)
T ss_pred hhhcccccchhhhhhccH---HHHhhheeeecCCCcceEEEecCCceeeeee-eecccchhh--hccccccc-cccccCC
Confidence 456667776544333322 2344444332 22233445677999997 445555554 23343333 3344332
Q ss_pred EEEEEEeecCCCCcccceeeEEEEEeccCCCCC------cc--cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEe
Q 012410 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GF--ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (464)
Q Consensus 143 ~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------~~--~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWd 214 (464)
-|.+ ...+..+++.. .. .....-|--|++++.|. .|.+++.| +.|--|-||+
T Consensus 140 ~~~s------------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~et~lS-aDdLrINLWn 199 (460)
T COG5170 140 PLTS------------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDKETLLS-ADDLRINLWN 199 (460)
T ss_pred CcCC------------------HHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cchheeee-ccceeeeecc
Confidence 2222 11223333321 00 11212234566799997 68888885 5677899999
Q ss_pred CCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc
Q 012410 215 LKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294 (464)
Q Consensus 215 l~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~ 294 (464)
+.- . |+..-|-||.-- ..+.+..-+.+..|+|+....+.-++..|+|+|-|+++..
T Consensus 200 l~i-------~-------------D~sFnIVDiKP~----nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 200 LEI-------I-------------DGSFNIVDIKPH----NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ccc-------c-------------CCceEEEeccCc----cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 752 1 222222222210 0011112235566778654455557788999999998543
Q ss_pred -EEE-------Ecc--------cCCCceEEEEEcCCCcEEEEEeCCeEEEEeCC--CceEEEeccCCC--------CcCC
Q 012410 295 -LME-------VSR--------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLL--------WHPD 348 (464)
Q Consensus 295 -~l~-------~l~--------gh~~~v~sv~FspdgqllaS~sD~TIklWd~~--Ge~l~tl~gH~~--------~~~~ 348 (464)
|.. ++. +-...++.+-|+|.|++++|-+=-||||||++ ..|+.|..=|.. +-.|
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 221 111 11235677889999999998877799999993 779998865533 1112
Q ss_pred CC--eeEEEECCCCCEEEEEec
Q 012410 349 CN--TNNIYITSDQDLIISYCK 368 (464)
Q Consensus 349 ~~--v~svafSpDg~~LaSgs~ 368 (464)
|. -.-+.||-|.+.+.|||.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred ceeeeEEEEecCCccccccccc
Confidence 20 235789999999999986
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00069 Score=67.85 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=137.5
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEE------------eCCCceeEEEEEcCCCcEEEEEeeCC-cceee
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI------------RSSSHVPLKILSIEDGTVLKVFYHLL-HRNKK 265 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vaf------------s~s~d~tIklWdi~tG~~l~tl~~~~-~~~~~ 265 (464)
.+||-|++-+..++|.+.|-+-...+.+..+.+|.+ -.+.|+|+|+.+++ |..++..-|.. -...+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~-~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS-GDSNKFAVHNQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe-cCcccceeeccccceee
Confidence 489999999999999998655443333222222222 23789999999997 44444433321 12588
Q ss_pred EEEEccCCCeEEE-EeCCCeEEEEECCC-CcEE-E-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEE
Q 012410 266 VDFIEQFNEKLLV-KQENENLQILDVRN-AELM-E-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTS 338 (464)
Q Consensus 266 V~F~~~~~~~lla-~s~D~tIkIWDv~t-g~~l-~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~t 338 (464)
.+.+++ +++++ -++-..|-.+.+.. ++.+ + .+...++.-....||-...+||++. |+++.|||++ +.+..+
T Consensus 164 ~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 164 LHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 888774 45555 46667777765544 4443 3 3344445566788999999999999 9999999994 665443
Q ss_pred eccCCCCcCCCCeeEEEECCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
... +-.+++..++++-|||-|- +++|-. =+-+.+-|+.+++-.+.+....+ +..++
T Consensus 242 ~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEh------------fs~~hv~D~R~~~~~q~I~i~~d----~~~~~---- 300 (344)
T KOG4532|consen 242 ISS-TRPHHNGAFRVCRFSLYGLLDLLFISEH------------FSRVHVVDTRNYVNHQVIVIPDD----VERKH---- 300 (344)
T ss_pred hcc-cCCCCCCceEEEEecCCCcceEEEEecC------------cceEEEEEcccCceeeEEecCcc----ccccc----
Confidence 221 1111223389999997543 333322 46788999988876555533322 11111
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
+.+.|..-.|+.++.-+...++++.
T Consensus 301 ------------------~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 301 ------------------NTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred ------------------cccccccccccCCCcccccccchhh
Confidence 2235777788888888888777653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00095 Score=73.82 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=112.7
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCce-eEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 191 VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~-tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
|=++ |||+.|- ++-..+.+-+.|.++.+...++. +.+-..++++|+... -+--.|.|.|.-+..+.-. .+-+.+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-e~d~~vv 275 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-ERDWVVV 275 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccc-cCceEEE
Confidence 5564 7887663 34556788888888877666555 455566777764221 1222344666655555311 1225555
Q ss_pred EEcc-------CCCeEEEEeCCCeEEEEECCC----C-cEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C
Q 012410 268 FIEQ-------FNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R 332 (464)
Q Consensus 268 F~~~-------~~~~lla~s~D~tIkIWDv~t----g-~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~ 332 (464)
|... ++....+ .+++|.+.|.++ + +.+..+.. ...|+.+++||||+.+..++ +.||-|-|+ .
T Consensus 276 fni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred EchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 5442 1222223 367899999998 3 45554332 25789999999999988887 999999998 3
Q ss_pred Cc------------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 333 GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 333 Ge------------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
-+ .+.+.+-=..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHH
Confidence 33 23333322222 24789999987777654 77888999876
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=71.92 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=100.0
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCC------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE--EeccCCCCcCC
Q 012410 279 KQENENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT--SFEDHLLWHPD 348 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~--tl~gH~~~~~~ 348 (464)
.-.+|.|+++-..-.+....|++=. ..--++.|++-|.-++++- +|.+.+=+. .+.+.+ +++.|...
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--- 167 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--- 167 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee---
Confidence 3456677776544444333333321 0123566888888888887 999986666 466655 99999987
Q ss_pred CCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEE-EccCCCCCCcccccCCCCCCccccccccc
Q 012410 349 CNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 349 ~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
.|...|+... +++.+|++ |+.+.-||+. .++|+.+ .+-|+.
T Consensus 168 --~Wta~f~~~~pnlvytGgD-----------D~~l~~~D~R~p~~~i~~n~kvH~~----------------------- 211 (339)
T KOG0280|consen 168 --AWTAKFSDKEPNLVYTGGD-----------DGSLSCWDIRIPKTFIWHNSKVHTS----------------------- 211 (339)
T ss_pred --eeeeecccCCCceEEecCC-----------CceEEEEEecCCcceeeecceeeec-----------------------
Confidence 7888898744 57788876 9999999998 7788876 666775
Q ss_pred cccccccccccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
.|.|+.-|| ++..|||||-|..||+||.
T Consensus 212 -----------GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 212 -----------GVVSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred -----------ceEEEecCCCCCceEEEeccccceeeeeh
Confidence 788888876 5789999999999999983
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.012 Score=68.45 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=110.7
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCcEEEEc--c--cCCCceEEEEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVS--R--TEFMTPSAFIF 311 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~~l~~l--~--gh~~~v~sv~F 311 (464)
-..||||+-+ |++..+-+--.+---.++|-|. |..|++.+ ....|-.|. ++|.....+ + .....|..+.|
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS-GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCC-CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE
Confidence 4789999987 8876666521111256777774 44444444 457777888 888765432 2 34467899999
Q ss_pred cCCCcEEEEEeCCeEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFRNRTVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~sD~TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++|+.+||.--..+|+||-. +-. +.+.+.-.... .+..+.|+|. ...|...+. .|.+...+
T Consensus 313 n~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~-----------~g~~~~~~ 377 (928)
T PF04762_consen 313 NSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTS-----------NGQYEIYD 377 (928)
T ss_pred CCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEec-----------CCcEEEEE
Confidence 99999999977445999986 322 45555532221 0234777773 333444442 34454433
Q ss_pred ----CCCCe--------EEEEEccCCCC--CC--cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 388 ----ILTGK--------CLAKINATNCS--PK--VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 388 ----i~tG~--------cl~tl~gh~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+..+. .++.+.|..-. |- ..+.+| |....=+.-..|..|+|+|++..+|
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP---------------Ms~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP---------------MSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch---------------HhceEEcCCCCcEEEEEeCCCCeEE
Confidence 22221 12333332210 00 001000 0000001123899999999999999
Q ss_pred EeeCCCcEEecc
Q 012410 452 TGNRHGLVHVWS 463 (464)
Q Consensus 452 Sgs~DgtVrlWd 463 (464)
.-..||+|.+|.
T Consensus 443 vl~~d~~l~~~~ 454 (928)
T PF04762_consen 443 VLTSDGSLSIYE 454 (928)
T ss_pred EEECCCCEEEEE
Confidence 999999999986
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0084 Score=64.76 Aligned_cols=268 Identities=12% Similarity=0.124 Sum_probs=144.9
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCc-------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
..++.|...+.+|.+.+.|..+|+.+-..+..... ..+.+.+. +++.++. ++.+ ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v----~~~~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFF----GTFD------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEE----ecCC------CeEEEEEC
Confidence 33666777777899999999999998877543320 11111111 2134444 1223 35555677
Q ss_pred ccCCCCCcccceeeccccC-------ceEEEEeCCCCcEEEEec---------CCCcEEEEeCCCCeEEEEecC------
Q 012410 169 RRGKPDSGFALFESESLKW-------PGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD------ 226 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~-------~~~VaFs~pdGk~LaSgs---------~D~tiKlWdl~tg~~l~tl~~------ 226 (464)
++|+. +|+.+.... ..+..+. ++.+++ ++ .++.+.-.|.+||+.+-....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 88886 333221111 0133443 354443 43 367788889999998754431
Q ss_pred ----------------CCEe---------EEEEeCCC------------------ceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 227 ----------------KHVQ---------EIKIRSSS------------------HVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 227 ----------------~~V~---------~Vafs~s~------------------d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
..|| ...|=+.. +..|--+|++||+++-.++...+..
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 0111 11221111 2368899999999999886322222
Q ss_pred e------eEEEEc---cCCC---eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE----------
Q 012410 264 K------KVDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---------- 321 (464)
Q Consensus 264 ~------~V~F~~---~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~---------- 321 (464)
+ .....+ .+++ .+++++.++.+...|.++|+.+-....-. ...+.+| +.+++.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCccc
Confidence 1 111111 1222 35668899999999999999875432100 1122233 3333321
Q ss_pred -------e-CCeEEEEeC-CCceEEEeccCC---CCcCCCC--eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 322 -------R-NRTVAVWNF-RGELVTSFEDHL---LWHPDCN--TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 322 -------s-D~TIklWd~-~Ge~l~tl~gH~---~~~~~~~--v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
. ++.+---|. +|+.+=+.+--. .|-.+.. ...++. .+.+|..++. ||.|.-.|
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald 422 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFD 422 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEE
Confidence 1 455656666 566654443220 0000000 012222 4567777765 99999999
Q ss_pred CCCCeEEEEEcc
Q 012410 388 ILTGKCLAKINA 399 (464)
Q Consensus 388 i~tG~cl~tl~g 399 (464)
..||+.+.+++-
T Consensus 423 ~~tG~~lW~~~~ 434 (488)
T cd00216 423 ATTGKELWKFRT 434 (488)
T ss_pred CCCCceeeEEEC
Confidence 999999988754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.017 Score=59.94 Aligned_cols=270 Identities=13% Similarity=0.186 Sum_probs=157.9
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--cc---ceee
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FA---LFES 182 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~---l~~~ 182 (464)
+.+.++|..+++.|-.+..+. .-.+..||+|+.+.+++.|-+-...+-.---+.+||.++=++.+. .| -+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-
Confidence 468888888888888885543 445778999999999999887664444445677888766444221 11 111
Q ss_pred ccccCceEEEEeCCCCcEEEE--ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-------CCceeEEEEEcC-CCcE
Q 012410 183 ESLKWPGFVEFDDVNGKVLTY--SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-------SSHVPLKILSIE-DGTV 252 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaS--gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-------s~d~tIklWdi~-tG~~ 252 (464)
...+++..++| .|||.|.- .+.-..|-|=|++..+.+..+..-..+.|=-++ -.|+++---.+. +|+.
T Consensus 93 -~~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 -VVPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -BS--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred -ecccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 22455578998 79998764 345667999999999988777633332221111 156655555554 6777
Q ss_pred EEEEeeCCcceeeEEE-----EccCCCeEEEEeCCCeEEEEECCCCcEE-----EEcc-cC--CCc-e---EEEEEcCC-
Q 012410 253 LKVFYHLLHRNKKVDF-----IEQFNEKLLVKQENENLQILDVRNAELM-----EVSR-TE--FMT-P---SAFIFLYE- 314 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F-----~~~~~~~lla~s~D~tIkIWDv~tg~~l-----~~l~-gh--~~~-v---~sv~Fspd- 314 (464)
.++-..--+......| .. .+++++--+.+|.|+--|+...+.. ..+. .+ ..| | --+++.+.
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred eEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 6443211111112222 22 3456777788888888786665421 1111 00 011 0 13667754
Q ss_pred CcEEEE------Ee--CCeEEEE--eC-CCceEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCC
Q 012410 315 NQLFLT------FR--NRTVAVW--NF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 315 gqllaS------~s--D~TIklW--d~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dg 381 (464)
+++++- ++ |.-=.|| |. +++.+..++ +|. +++|++|-|.+ +|...+. .++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~~ 312 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GDG 312 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TTT
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CCC
Confidence 454443 12 3334455 66 699999887 342 67999999998 5544443 389
Q ss_pred eEEEEeCCCCeEEEEEccCC
Q 012410 382 SINVSSILTGKCLAKINATN 401 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~ 401 (464)
++.++|..||+.++++.+-.
T Consensus 313 ~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEEEETTT--EEEEE---S
T ss_pred eEEEEeCcCCcEEeehhccC
Confidence 99999999999999997643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.001 Score=71.86 Aligned_cols=178 Identities=11% Similarity=0.214 Sum_probs=122.5
Q ss_pred cCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|.. .|.|| |-|.+|+|=-.-| |-||-=++...++.+..-.|+-|.|||. -+.|.|+.
T Consensus 210 nWTetyv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~------------EkYLVT~s------- 268 (698)
T KOG2314|consen 210 NWTETYVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPN------------EKYLVTYS------- 268 (698)
T ss_pred cceeeeEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCc------------cceEEEec-------
Confidence 3444 79998 9999999877666 7799877777777776677888888887 23333332
Q ss_pred eEEEEccCCCeEEE--EeCCCeEEEEECCCCcEEEEccc--CCCceEE-EEEcCCCcEEEEEeCCeEEEEeCCCceEEEe
Q 012410 265 KVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRT--EFMTPSA-FIFLYENQLFLTFRNRTVAVWNFRGELVTSF 339 (464)
Q Consensus 265 ~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~s-v~FspdgqllaS~sD~TIklWd~~Ge~l~tl 339 (464)
|. ...+. ..+.+.|.|||++||.+++.+.. ....+|. |-+|.|++++|.-.-.+|.|++..- ..-|
T Consensus 269 -----~~--p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps--f~ll 339 (698)
T KOG2314|consen 269 -----PE--PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS--FMLL 339 (698)
T ss_pred -----CC--ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc--eeee
Confidence 11 00000 23558899999999999987765 4445554 5599999999987756799999632 3345
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
++....+.+ |..-.|||-+++||=... +.+.+ -.++-|=.+.+++-|++-+-|+
T Consensus 340 d~Kslki~g--Ir~FswsP~~~llAYwtp-e~~~~-----parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 340 DKKSLKISG--IRDFSWSPTSNLLAYWTP-ETNNI-----PARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred cccccCCcc--ccCcccCCCcceEEEEcc-cccCC-----cceEEEEecCccceeeecccee
Confidence 555555544 778889999999987653 22222 3466777777777777665554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0026 Score=65.01 Aligned_cols=205 Identities=15% Similarity=0.212 Sum_probs=120.3
Q ss_pred EEEEeCCCCcEEEEecCCCc-EEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSI-YKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~t-iKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.++.++..+..+|.+-.-++ .-+||..+|+.+..+.. +.| +-|.+| ..|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------------~~g---RHFyGH------g~f 58 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------------PPG---RHFYGH------GVF 58 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------------------CCC---CEEecC------EEE
Confidence 45665225666666655554 34666666666554431 112 122322 356
Q ss_pred EccCCCeEEEEe-----CCCeEEEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEeC--------C----------
Q 012410 269 IEQFNEKLLVKQ-----ENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--------R---------- 324 (464)
Q Consensus 269 ~~~~~~~lla~s-----~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD--------~---------- 324 (464)
+++ +..|.+.- .-|-|-|||+. +-+.+..+.+|-..|-.+.+.|||+.|+.+.- +
T Consensus 59 s~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 59 SPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred cCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 663 44444432 23789999999 66777889999889999999999988777541 2
Q ss_pred -eEEEEeC-CCceEEE--e--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 325 -TVAVWNF-RGELVTS--F--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 325 -TIklWd~-~Ge~l~t--l--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
++-+-|. +|+++.. | ..|.+. ++-+++.+||..++..=. +.+.. ..---|-+++ -|+-+.-+.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lS-----iRHLa~~~~G~V~~a~Q~-qg~~~---~~~PLva~~~--~g~~~~~~~ 206 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLS-----IRHLAVDGDGTVAFAMQY-QGDPG---DAPPLVALHR--RGGALRLLP 206 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccc-----eeeEEecCCCcEEEEEec-CCCCC---ccCCeEEEEc--CCCcceecc
Confidence 2334455 6998775 7 558776 889999999987765421 11100 0011222332 222222221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L-aSgs~DgtVrlWd 463 (464)
.-.. ....|. ..|=||+|++||..+ +|+-.-+.+.+||
T Consensus 207 ~p~~--------------------~~~~l~-------~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 207 APEE--------------------QWRRLN-------GYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CChH--------------------HHHhhC-------CceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 1110 000000 288999999999877 5666888999997
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0021 Score=71.20 Aligned_cols=201 Identities=12% Similarity=0.131 Sum_probs=123.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------------CceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------------SHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------------~d~tIklWdi~t 249 (464)
-+.|.-++|+ |||+.+.+.+.+. +.|.-+..+. ...=+.++|++. .+.+|.+.|..+
T Consensus 234 dgnpd~v~~s-pdGk~afvTsyNs-------E~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 234 DGNLDNVDTD-YDGKYAFSTCYNS-------EEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred CCCcccceEC-CCCCEEEEeccCc-------ccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 3566689997 8999998887543 2344333332 111144555431 346799999998
Q ss_pred ----C-cEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE------------EEEcccCCCceEEEEE
Q 012410 250 ----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------MEVSRTEFMTPSAFIF 311 (464)
Q Consensus 250 ----G-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~------------l~~l~gh~~~v~sv~F 311 (464)
| +.+..+.-. .+-+.|+++| ++.++++++ .+.++-+.|+.+.+- .....- ...|.-.+|
T Consensus 306 ~~~~~~~v~~yIPVG-KsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaF 382 (635)
T PRK02888 306 AANAGSALTRYVPVP-KNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAF 382 (635)
T ss_pred cccCCcceEEEEECC-CCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEE
Confidence 4 566665521 4458899999 466666654 899999999998652 111111 235667789
Q ss_pred cCCCcEEEEEe-CCeEEEEeCC-------C----ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-----
Q 012410 312 LYENQLFLTFR-NRTVAVWNFR-------G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ----- 374 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~-------G----e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~----- 374 (464)
.++|..+.|-- |..|-.||+. | ..+..+.-|.+.-..+....=.-.|||++|+|.++- +.|+
T Consensus 383 Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~-skdrfl~vg 461 (635)
T PRK02888 383 DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF-SKDRFLPVG 461 (635)
T ss_pred CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc-ccccccCCC
Confidence 99999888877 9999999973 2 345555545443110000111128999999999873 2222
Q ss_pred -cccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 375 -WMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 375 -~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+-.-+++ |-|| +|.-++-+..|.
T Consensus 462 pl~pen~q---lidI-sgdkM~lv~d~p 485 (635)
T PRK02888 462 PLHPENDQ---LIDI-SGDKMKLVHDGP 485 (635)
T ss_pred CCCCCcce---eEEc-cCCeeEEEecCC
Confidence 1111334 5565 676666665443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.085 Score=55.28 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=173.8
Q ss_pred EEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce
Q 012410 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (464)
Q Consensus 110 ~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~ 189 (464)
+.+++..+++....+.. .. ....+.++|+|..+..+..... .+-.+... .+..-..... -..+|.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~~g~~~~v~~~~~~-----------~~~~~~~~-~n~~~~~~~~-g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-GR-GPGGVAVNPDGTQVYVANSGSN-----------DVSVIDAT-SNTVTQSLSV-GGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-CC-CCceeEEcCccCEEEEEeecCc-----------eeeecccc-cceeeeeccC-CCcccc
Confidence 55555455555555533 22 5788999999977766442221 12222333 2111110011 114566
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~ 257 (464)
.+++++...++.+....+.+|.+-|.++.+++.++. ...-..++++|+ ...++-+.|-.+++.+++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788874444477777778999999999999988876 446678888873 36899999999999999865
Q ss_pred eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEE-E---cccCCCceEEEEEcCCCcEEEEEe--C--CeEEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 328 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~-~---l~gh~~~v~sv~FspdgqllaS~s--D--~TIkl 328 (464)
-...+ ..++|.| +++++.+. ..+++|.+.|.++-...+ . ..+-...+.-++++|||+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 22133 8899988 46667775 589999999977776664 1 112234678899999999555544 3 68999
Q ss_pred EeC-CCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 329 WNF-RGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 329 Wd~-~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
-|. ++....+ +..-..+ -..++++|+|+.+..... ..+++.+=|..+.+...++.....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeeccccc
Confidence 998 5776664 3322222 246899999999987643 258899999888888887766553
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.046 Score=57.29 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=142.4
Q ss_pred CceEEEEeCCCC-cEEEEecCCCcEEEEeCCCCeEEEEe--c-C-CCEeEEEEeCC---------CceeEEEEEcCCCcE
Q 012410 187 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSI--S-D-KHVQEIKIRSS---------SHVPLKILSIEDGTV 252 (464)
Q Consensus 187 ~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~tg~~l~tl--~-~-~~V~~Vafs~s---------~d~tIklWdi~tG~~ 252 (464)
+|..|+.. |+| +..+.-+...++.+-+.. ....+. . . ..-+.+++++. .+..|.+.|.++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 66688886 788 444433333355554433 111111 1 1 22346666542 467899999988888
Q ss_pred EEEEe-eCCcceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE-e-CCeE
Q 012410 253 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 326 (464)
Q Consensus 253 l~tl~-~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~-s-D~TI 326 (464)
+.+.. +. .-..++|.+. ++++.++. .++++.+.|-.+++.+++...- ..+..++|.|+|+.+... . +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCeE
Confidence 88776 32 3378888884 66776653 4899999999999988874332 245899999999955444 4 9999
Q ss_pred EEEeCCCceEEE------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-cc
Q 012410 327 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NA 399 (464)
Q Consensus 327 klWd~~Ge~l~t------l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~g 399 (464)
.+-|.++.-+.. ..-+... ..++++|||+.+..... .+.|++|-.-|..+++-..+- ..
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999986554442 2222222 46999999997777654 222578989998888877652 11
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-CcEEe
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHV 461 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-gtVrl 461 (464)
-. + .-..++++|+|+.++..... ++|.+
T Consensus 251 ~~---------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 251 GS---------------------------------G-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cc---------------------------------C-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 11 0 22457899999999888544 44443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.11 Score=56.94 Aligned_cols=269 Identities=14% Similarity=0.177 Sum_probs=152.7
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceE----------EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i----------~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|++.+.++.+.+.|..||+.+-..+......+ +.+++. +..++..+ .++ + +.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t---~dg------~-l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGT---LDA------R-LVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEc---CCC------E-EEEE
Confidence 367888888889999999999999988754322112 223332 22333311 222 3 2233
Q ss_pred EeccCCCCCcccceeeccccCc------eEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEec---CC-----
Q 012410 167 YIRRGKPDSGFALFESESLKWP------GFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSIS---DK----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~------~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~---~~----- 227 (464)
|.++|+.. |+.....+. .+-.. .+|++++..+ .++.|.-.|++||+.+-... ..
T Consensus 136 Da~TGk~~-----W~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 136 DAKTGKVV-----WSKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred ECCCCCEE-----eecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 56777763 332111100 01111 1566655432 36789999999999874432 11
Q ss_pred -------------------------CEeE-EEEe--------------C-C-----Cc----eeEEEEEcCCCcEEEEEe
Q 012410 228 -------------------------HVQE-IKIR--------------S-S-----SH----VPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 228 -------------------------~V~~-Vafs--------------~-s-----~d----~tIklWdi~tG~~l~tl~ 257 (464)
.||. .++- | . .| ..|--.|++||+..-.|+
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 1221 1221 1 0 12 257777999999999998
Q ss_pred eCCcceeeEE-------E-EccCCC--eEE-EEeCCCeEEEEECCCCcEEEE--cccCCCce------------------
Q 012410 258 HLLHRNKKVD-------F-IEQFNE--KLL-VKQENENLQILDVRNAELMEV--SRTEFMTP------------------ 306 (464)
Q Consensus 258 ~~~~~~~~V~-------F-~~~~~~--~ll-a~s~D~tIkIWDv~tg~~l~~--l~gh~~~v------------------ 306 (464)
...|-++.-+ + .+.+++ +++ .++.+|.+.+.|-.||+++.. ...+..++
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~ 368 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARS 368 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCc
Confidence 5435443322 1 112333 244 478999999999999998721 00000000
Q ss_pred ---------------------EEEEEcCCCcEEEEEe-C---------------------------------CeEEEEeC
Q 012410 307 ---------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNF 331 (464)
Q Consensus 307 ---------------------~sv~FspdgqllaS~s-D---------------------------------~TIklWd~ 331 (464)
...++.|+..++-... + +.|.-||+
T Consensus 369 ~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~ 448 (527)
T TIGR03075 369 ADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDP 448 (527)
T ss_pred CCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeC
Confidence 0145666665553332 3 46788888
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+|+.+-..+..... .-+. +.-.|.+++.+.. ||.++.+|..||+.|...+-..
T Consensus 449 ~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 449 ITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeeEecCCCCC-----CCcc-eEECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 78887766543322 1122 2235567777765 9999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0056 Score=61.48 Aligned_cols=217 Identities=13% Similarity=0.027 Sum_probs=127.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
-.+||...+.|...+|...+++-+..+.-.+.. +++..+-+.. ..+++ +.| ||+++-++.-|-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i~-----snd------ht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNIA-----SND------HTGKTMVVSGDSN- 150 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceeec-----cCC------cceeEEEEecCcc-
Confidence 367888889999999987766644433232332 3333333331 12332 566 8999888754432
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~ 254 (464)
.+++|... + -..+++.| +|++.+++-+.-..|-++.+.. ++..-+++.
T Consensus 151 -~~~~h~~~-~-~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~-------------------~sey~~~~~--------- 198 (344)
T KOG4532|consen 151 -KFAVHNQN-L-TQNSLHYS-NDPSWGSSVGDSRRVFRYAIDD-------------------ESEYIENIY--------- 198 (344)
T ss_pred -cceeeccc-c-ceeeeEEc-CCCceEEEecCCCcceEEEeCC-------------------ccceeeeeE---------
Confidence 22333322 1 14588997 8999999877665555444321 111111111
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-----EcccCCCceEEEEEcCCCcE---EEEEeCCeE
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQL---FLTFRNRTV 326 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~l~gh~~~v~sv~Fspdgql---laS~sD~TI 326 (464)
.......-+.+.|++ .+.+++++..|+++-||||+.-.... +-..|.+.++.+-|+|.|-+ |.|-.=+-+
T Consensus 199 -~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 199 -EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred -ecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 111113347788877 46788889999999999999854332 33468899999999986653 333226678
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
.|-|. ++.-.+... + -..+.|+|..+.|...+.++
T Consensus 277 hv~D~R~~~~~q~I~------i---~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIV------I---PDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEEcccCceeeEEe------c---CccccccccccccccccccC
Confidence 88897 454322211 1 12345666667666666543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=46.48 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=35.0
Q ss_pred CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 292 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 292 tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
+++++..+..|...+.++.|.|+++++++++ |++|++||
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CcEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567788888999999999999999999999 99999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.6e-05 Score=86.25 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=117.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCcee-EEEEEcC-CCcEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVP-LKILSIE-DGTVLKVF 256 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~t-IklWdi~-tG~~l~tl 256 (464)
.++|| .+...|+-|+.-|.||++++.+|.+.-+.. ...|.-|--|- +...| ..||+.. +|...++|
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence 68998 788999999999999999999999875443 33343333221 12222 4678874 45555566
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCC--Cc-eEEEEEcCCCcEEEEEeCCeEEEEeCC
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEF--MT-PSAFIFLYENQLFLTFRNRTVAVWNFR 332 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~--~~-v~sv~FspdgqllaS~sD~TIklWd~~ 332 (464)
.. ...|.|+-. -..-+.|.+-....|||++|+..+.+ |.+-- .. =.-+.|||+..+++- || -|||++
T Consensus 1185 ~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--dG--vLWDvR 1255 (1516)
T KOG1832|consen 1185 DE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--DG--VLWDVR 1255 (1516)
T ss_pred cc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--Cc--eeeeec
Confidence 43 367778653 23334455556778999999987766 33321 11 123458888888743 55 589995
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
-+-++.|..-+.. . .=.|+|.|.-++--|. |||+.|=+.|++...
T Consensus 1256 ~~~aIh~FD~ft~~-----~-~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDY-----G-GGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred cHHHHhhhhhheec-----c-cccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 6667766554432 1 2349999999998765 899998877776543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00021 Score=73.45 Aligned_cols=154 Identities=8% Similarity=0.120 Sum_probs=101.4
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------CCceeEEEEEcCC-----CcEEEEEeeCCcceeeEEE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS--------SSHVPLKILSIED-----GTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~--------s~d~tIklWdi~t-----G~~l~tl~~~~~~~~~V~F 268 (464)
++.+.+..|-|=|++||--.+-.+...|.+..|.. -..+.|-..|+.. |.|...|-|. ..+.++.-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~-Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD-SSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC-cchhhhhh
Confidence 45566778888898887654433444565555532 1334555555543 4666666653 34444432
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcE---EEEcccCCCceE--EEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPS--AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l~gh~~~v~--sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
.-.++++|++++.+++|+|||.+--+| +++..||-+.-. -+-..++...+++++ |---|||.+ +|.++.|+.-
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 221346888889999999999999899 899999965322 233457777777888 999999999 6999998875
Q ss_pred CCCCcCCCCeeEEEEC
Q 012410 342 HLLWHPDCNTNNIYIT 357 (464)
Q Consensus 342 H~~~~~~~~v~svafS 357 (464)
.... ++-.+++++|.
T Consensus 387 ~~s~-~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSA-SEVDIPSVAFD 401 (425)
T ss_pred CCcc-ccccccceehh
Confidence 5442 11125667664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0003 Score=77.60 Aligned_cols=149 Identities=12% Similarity=0.190 Sum_probs=108.0
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCc---------------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---------------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
..++|.- ..++|+.|+.||.+|+.-+.|.. .-++|.||...|.-+.|+.+.|.|-|+. +|-|-
T Consensus 18 ~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 18 HCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 3444543 24789999999999998776632 1248899999999999999999998888 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE--EEEccCCCCC
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL--AKINATNCSP 404 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl--~tl~gh~~~~ 404 (464)
+|-+ .|.-...+....+. ..|.|+.+..||+.|+-... ||.|-+=.+ .|.-+ +.|+|.
T Consensus 97 VWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYe-----------DGavIVGsv-dGNRIwgKeLkg~---- 157 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYE-----------DGAVIVGSV-DGNRIWGKELKGQ---- 157 (1189)
T ss_pred EEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEc-----------cCCEEEEee-ccceecchhcchh----
Confidence 9998 77654433333332 23889999999999988876 776644332 22211 122222
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...-|.+|||.+.+.-+-.+|.++|+||
T Consensus 158 --------------------------------~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 158 --------------------------------LLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred --------------------------------eccceeecccHHHHHhhhcCCcEEEecc
Confidence 2335789999999999999999999987
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.01 Score=63.69 Aligned_cols=206 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~ 258 (464)
-.|..+.++ |+|+.++- ..|+.|-|.......-.... .-.+.+|.++ ...+|+|..--+.+..++++-
T Consensus 33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCcccccC---ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 346689997 89999887 55788888874332222221 2234555442 244566642212222223321
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCc----
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE---- 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge---- 334 (464)
. ..+..+ ++|.+|.-..++.|.+||+++++.+....-. .|..|.||++|+++|=.++.+|-|.+.+-+
T Consensus 108 ~-~~~~~I-----f~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 P-FSVEKI-----FGGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp S-S-EEEE-----E-SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred C-cccceE-----EcCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 1 122333 2366666555559999999999999887743 378999999999999999778999998655
Q ss_pred --------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCC
Q 012410 335 --------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSP 404 (464)
Q Consensus 335 --------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~ 404 (464)
.+..+..-... |.+.+|--| ++-++. -.-||- +..|++ ++++ ..
T Consensus 180 ~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~~~i~~l---d~-- 233 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISER-----IKSGCWVED---CFIYTT-----------SNHLKY--LVNGETGIIAHL---DK-- 233 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEEEEEEE----SS--
T ss_pred ccccCchhceEEEEEecce-----eEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCcceEEEc---CC--
Confidence 55555442222 678888665 223433 335665 345554 2222 21
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.+.=+.+.|+.+.|+....|+.|...
T Consensus 234 --------------------------------~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 234 --------------------------------PLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp ----------------------------------EEEEEETTTTEEEEE-TT--EEEE
T ss_pred --------------------------------ceEEEEEEccCCEEEEEECCCCEEEE
Confidence 66778899988999999999888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00083 Score=66.98 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=96.7
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCC-Cc-eEEEeccCCCCcCCCCeeEEEECC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~-Ge-~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+..++|+++.-+.+....---..|.+++-.|.. +++++|+ ||.|-|||.+ +. .+..|..|... +|-|-|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 356678776554333222122347777767654 4566677 9999999994 43 45578899887 88999999
Q ss_pred -CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 359 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 359 -Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
++..|..+|+ ||++-.||. +++-|. + +.+.++...=.+.+ -..+..++-+..++-...
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i-~~~~s~~s~WLsgD-------~v~s~i~i~~ll~~~~~S 292 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-I-SNQASVISSWLSGD-------PVKSRIEITSLLPSRSLS 292 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-e-cCccccccccccCC-------cccceEeeecccccccee
Confidence 7888888875 999999995 556555 2 12211110000000 001123334444444445
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|. .|+--|.+|++|+.-+.|.|.++
T Consensus 293 in--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 293 IN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ee--eeeccCceEEeccccceEEEecc
Confidence 55 46667999999999999998764
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.059 Score=57.65 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEE--EEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIk--IWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
..+.++|+++|+.-+.++.. ......+|+|+ +.+++.+ ..|+... +.|+.+++..+ |..-...-..=.|||||+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPD-GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCC-CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCC
Confidence 35889999999887777632 45577889994 6677665 4666555 56888888555 322211112334899999
Q ss_pred EEEEEe--CCeEEEE--eCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 317 LFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 317 llaS~s--D~TIklW--d~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.++=.+ .|.-.|| |.+|.-++.+.-+... -..-.+||||++|+.-+
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-----~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-----NSNPVWSPDGDKIVFES 344 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeeccCCC-----CcCccCCCCCCEEEEEe
Confidence 988777 4444555 5566655544433322 01345799999999876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.066 Score=57.32 Aligned_cols=206 Identities=10% Similarity=0.093 Sum_probs=121.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
..++=| .+|.....+.. ....+..-.++|+++.++-++-+.... -.+.++++.+|+... ..+ ..++.
T Consensus 174 ~l~~~D-~dg~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~------~~i~~~~l~~g~~~~---i~~--~~g~~ 240 (425)
T COG0823 174 ELALGD-YDGYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGC------PRIYYLDLNTGKRPV---ILN--FNGNN 240 (425)
T ss_pred eEEEEc-cCCcceeEecc-cCcceeccccCcCCCceEEEEEecCCC------ceEEEEeccCCccce---eec--cCCcc
Confidence 344434 34777888855 456689999999999998876443321 468888988888632 222 22444
Q ss_pred eEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 189 GFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
..-+|| |||+.||.++. |+..-|| +.|+.+++ +..|++.........
T Consensus 241 ~~P~fs-pDG~~l~f~~~rdg~~~iy------------------------------~~dl~~~~-~~~Lt~~~gi~~~Ps 288 (425)
T COG0823 241 GAPAFS-PDGSKLAFSSSRDGSPDIY------------------------------LMDLDGKN-LPRLTNGFGINTSPS 288 (425)
T ss_pred CCccCC-CCCCEEEEEECCCCCccEE------------------------------EEcCCCCc-ceecccCCccccCcc
Confidence 467787 99999986643 4433332 23333333 222443223334566
Q ss_pred EEccCCCeEEEEe-CCCe--EEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeC-CCceEEE
Q 012410 268 FIEQFNEKLLVKQ-ENEN--LQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNF-RGELVTS 338 (464)
Q Consensus 268 F~~~~~~~lla~s-~D~t--IkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~-~Ge~l~t 338 (464)
|+| +|.+|+..+ ..|. |-+.|+..++..+ ++.+-... .-.+||||+.|+--+ ++- |-+-|. +|.-++.
T Consensus 289 ~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 289 WSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred CCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 777 466666644 4444 4455766666544 33332222 344899999999877 444 555555 3443554
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
|..-.. ...-.+.|||..|+..+.
T Consensus 366 lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 366 LTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cccccc------CCCCCcCCCCceEEEecc
Confidence 543322 234567899999987654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0003 Score=79.11 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=91.9
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC-eEEEEeC--CCceE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-TVAVWNF--RGELV 336 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~-TIklWd~--~Ge~l 336 (464)
.-.+++|+-. .+.|++|+..|.||++++.+|.-......|...|+-+-=|-||.++++++ .+ -..||+. .|...
T Consensus 1103 ~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1103 LFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred ceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence 3478899874 57888899999999999999999999999999888888888999888876 44 6899998 48888
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-Ecc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INA 399 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~g 399 (464)
++|.+.. .|-||..-+.-|-|+. ...+-|+|++|+.-+.| |.+
T Consensus 1182 Hsf~ed~---------~vkFsn~~q~r~~gt~-----------~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1182 HSFDEDK---------AVKFSNSLQFRALGTE-----------ADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred ccccccc---------eeehhhhHHHHHhccc-----------ccceEEEecccCcHHHHhcCc
Confidence 8887543 4667765554444554 34578999999987776 443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0048 Score=70.01 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=117.1
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
++.++.|+.-+.|--.|+.+++..++..-.. .-..+.-.+++.|.+|. .|||-|-|. +-+.+++|..|++.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si---- 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI---- 220 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccC--CceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce----
Confidence 3567778755566677988888777644332 22455678999999999 999999999 589999999999873
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC------CCC----cccccCCCC-C-Ccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC------SPK----VDDELGSSS-T-GKS 418 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~------~~~----~~~~~~~~~-~-~~~ 418 (464)
..|.-.|++|++++.|- -+.-.--|.-||+||+.+=+.|.-++=|-+ +|. ..+++.+|+ + +-+
T Consensus 221 ---SDfDv~GNlLitCG~S~--R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 ---SDFDVQGNLLITCGYSM--RRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ---eeeeccCCeEEEeeccc--ccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 45777899999998731 111122478899999977666665544433 222 113344443 1 000
Q ss_pred cccccc-ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKS-SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~-~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
....|. ..+-...+. -..+.+..+|+.|+-||-|..+|-|++|-
T Consensus 296 ~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 001110 011110010 01488999999999999999999999994
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0046 Score=67.27 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=90.5
Q ss_pred eEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEE-E---eCCCeEE----EEECCCCcEEE---EcccCCCceE
Q 012410 241 PLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLV-K---QENENLQ----ILDVRNAELME---VSRTEFMTPS 307 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla-~---s~D~tIk----IWDv~tg~~l~---~l~gh~~~v~ 307 (464)
.+-|..+..+ -+..|.. .-..--.+.|+--.+.++.+ - +.+|.+. +|++..++... +.......|.
T Consensus 185 Nl~L~~~~~~-klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGG-KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCC-cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 4666666533 3333321 00222677777644455554 1 2444433 67877665433 2234556789
Q ss_pred EEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 308 AFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 308 sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+++++|+...|+-|+ ||+|.|||.+-+ ++++..+.-- ..-++++|||.+++.|+. -|-+.+|
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~ka~~~-----P~~iaWHp~gai~~V~s~-----------qGelQ~F 326 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAKAEFI-----PTLIAWHPDGAIFVVGSE-----------QGELQCF 326 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCC-eeeeeeeccc-----ceEEEEcCCCcEEEEEcC-----------CceEEEE
Confidence 999999999999999 999999998422 3444444322 568999999999999986 7999999
Q ss_pred eCCCCeEEEEE
Q 012410 387 SILTGKCLAKI 397 (464)
Q Consensus 387 di~tG~cl~tl 397 (464)
|+.-.-+--.+
T Consensus 327 D~ALspi~~qL 337 (545)
T PF11768_consen 327 DMALSPIKMQL 337 (545)
T ss_pred EeecCccceee
Confidence 98765544333
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=71.38 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=83.3
Q ss_pred CeEEEEECCCCc--EEEEcccCCCceEEEEEcC-CCcEEEE----Ee-CCe--E--EEEeC-CCce----EEEeccCCCC
Q 012410 283 ENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-ENQLFLT----FR-NRT--V--AVWNF-RGEL----VTSFEDHLLW 345 (464)
Q Consensus 283 ~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp-dgqllaS----~s-D~T--I--klWd~-~Ge~----l~tl~gH~~~ 345 (464)
-++.|+-+..++ .+-..+++.+ |..+.||- +...+-| .+ ++. | -++++ ++++ ++++. ....
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~d-Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~ 261 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTEND-PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQ 261 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCC-cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCc
Confidence 356666654442 3334455544 46677883 4444444 23 442 2 35666 3442 22332 2222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
|.+++++|+.+.|+-||. ||+|.|||..++-- ++.-+.-
T Consensus 262 -----v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~~t--~~~ka~~----------------------- 300 (545)
T PF11768_consen 262 -----VICCARSPSEDKLVLGCE-----------DGSIILYDTTRGVT--LLAKAEF----------------------- 300 (545)
T ss_pred -----ceEEecCcccceEEEEec-----------CCeEEEEEcCCCee--eeeeecc-----------------------
Confidence 789999999999999997 99999999866532 2211111
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+-++|+|||..++.||+-|.+.+||+
T Consensus 301 -----------~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 301 -----------IPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred -----------cceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567999999999999999999999995
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.59 Score=48.73 Aligned_cols=260 Identities=12% Similarity=0.144 Sum_probs=149.0
Q ss_pred CCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC----------CCcEEEEeCCCCeEEEE
Q 012410 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYS 223 (464)
Q Consensus 154 dfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~----------D~tiKlWdl~tg~~l~t 223 (464)
.|+++.+ .+.+-|-..|+..+ .... +..+-+..| |||+.+..++. .--|-+||.+|-+....
T Consensus 11 ~~~~~~~-rv~viD~d~~k~lG----mi~~--g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 11 VFFHMTS-RVYVIDADSGKLLG----MIDT--GFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp GGGGSSE-EEEEEETTTTEEEE----EEEE--ESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred ccccccc-eEEEEECCCCcEEE----Eeec--ccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 3677774 67788877777643 2211 333357787 89999987654 44799999999877653
Q ss_pred --ecCC-CEe------EEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 224 --ISDK-HVQ------EIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 224 --l~~~-~V~------~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
|+.+ ..+ ..++|++ --..|-|-|++.++.+..+.- ...+-|- |..+..+.+-+.||.
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSC
T ss_pred EecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCc
Confidence 3332 222 2233332 224688899999999988863 2223332 322455666678888
Q ss_pred EEEEECC-CCcEEEE----cccCCCceE-EEEEcCCC-cEEEEEe-CCeEEEEeCCCceEE---Eec------cCCCCcC
Q 012410 285 LQILDVR-NAELMEV----SRTEFMTPS-AFIFLYEN-QLFLTFR-NRTVAVWNFRGELVT---SFE------DHLLWHP 347 (464)
Q Consensus 285 IkIWDv~-tg~~l~~----l~gh~~~v~-sv~Fspdg-qllaS~s-D~TIklWd~~Ge~l~---tl~------gH~~~~~ 347 (464)
+.-..+. .|+..+. +....+.+. .-+++..+ +++- -+ +|.|.-=|+.|+-.. .++ .-..|.|
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 8877666 5765432 222212111 11233333 3333 34 677766676554322 221 2235655
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.- -.-+++++..+.|..-=....+..- ......|-++|+.|+|.++.|.--.
T Consensus 238 GG-~Q~~A~~~~~~rlyvLMh~g~~gsH-KdpgteVWv~D~~t~krv~Ri~l~~-------------------------- 289 (342)
T PF06433_consen 238 GG-WQLIAYHAASGRLYVLMHQGGEGSH-KDPGTEVWVYDLKTHKRVARIPLEH-------------------------- 289 (342)
T ss_dssp -S-SS-EEEETTTTEEEEEEEE--TT-T-TS-EEEEEEEETTTTEEEEEEEEEE--------------------------
T ss_pred cc-eeeeeeccccCeEEEEecCCCCCCc-cCCceEEEEEECCCCeEEEEEeCCC--------------------------
Confidence 43 2458888877666543221000000 0012457888999999999996422
Q ss_pred cccccccccCEEEEEEcCCCC-EEEEee-CCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd 463 (464)
.+.||+.+.|.+ .|+..+ .++++.++|
T Consensus 290 ---------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ---------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 577999999998 666655 579999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.34 Score=52.45 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=123.9
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCc-----eEEEEEEeeCCCEEEEEEeecCCCCcc-cceeeEEEEEeccCC
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDNFSS-LKCRSTKIEYIRRGK 172 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-----~i~Sv~fs~~g~~l~svSa~~sddfs~-L~~~ti~l~~i~~G~ 172 (464)
+.|...+.+|.+.++|..||+.+-..+..... ..-+..+.. ..++..+ ...++.. -....+.--|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~--~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGS--SGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEec--cccccccCCCCcEEEEEECCCCc
Confidence 78888889999999999999999887553321 111222221 3343322 1111110 001344444667777
Q ss_pred CCCcccceeeccc--------c---------C--c---eEEEEeCCCCcEEEEecCCC------------------cEEE
Q 012410 173 PDSGFALFESESL--------K---------W--P---GFVEFDDVNGKVLTYSAQDS------------------IYKV 212 (464)
Q Consensus 173 ~~~~~~l~~~~~~--------~---------~--~---~~VaFs~pdGk~LaSgs~D~------------------tiKl 212 (464)
. +|..+.. . + + .+.+++ +.+.++..++.|+ ++--
T Consensus 187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~A 260 (488)
T cd00216 187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVA 260 (488)
T ss_pred e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEE
Confidence 5 2221100 0 0 0 034564 3333444455443 6888
Q ss_pred EeCCCCeEEEEec--CCCE-----------e----------EEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 213 FDLKNYTMLYSIS--DKHV-----------Q----------EIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 213 Wdl~tg~~l~tl~--~~~V-----------~----------~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
.|++||+.+-... ...+ . .+.+-+..++.+.-.|.+||+.+...+.. ...++..
T Consensus 261 ld~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~ 337 (488)
T cd00216 261 LDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYD 337 (488)
T ss_pred EcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccC
Confidence 8999999986543 1111 1 12344456788999999999999876521 0112221
Q ss_pred ccCCCeEEEE------------------eCCCeEEEEECCCCcEEEEcccC--C------CceEEEEEcCCCcEEEEEe-
Q 012410 270 EQFNEKLLVK------------------QENENLQILDVRNAELMEVSRTE--F------MTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 270 ~~~~~~lla~------------------s~D~tIkIWDv~tg~~l~~l~gh--~------~~v~sv~FspdgqllaS~s- 322 (464)
| +.+.+. ..++.|.-.|+.+|+.+=..... . .....-.....+.++..++
T Consensus 338 ~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~ 414 (488)
T cd00216 338 P---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA 414 (488)
T ss_pred C---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC
Confidence 2 333332 24678888899999876433211 0 0000000112456666667
Q ss_pred CCeEEEEeC-CCceEEEec
Q 012410 323 NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~ 340 (464)
|+.|...|. +|+.+-+++
T Consensus 415 dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 415 DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCeEEEEECCCCceeeEEE
Confidence 999999999 799988765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.075 Score=53.67 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCeEEEEeCCCeEEEEECCC------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-
Q 012410 273 NEKLLVKQENENLQILDVRN------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL- 344 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~t------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~- 344 (464)
+|++||-=.|..|.|=-.+. |+| ++.+.-+-.=+-++||||+.+||.+. .|+|++.|+.|..+..+..-..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 45565555555555533222 344 45554444556799999999999999 9999999998887776654322
Q ss_pred -CcCCCCeeEEEECCC
Q 012410 345 -WHPDCNTNNIYITSD 359 (464)
Q Consensus 345 -~~~~~~v~svafSpD 359 (464)
....+.|-.+.|-+-
T Consensus 87 ~~d~~~Aiagl~Fl~~ 102 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEY 102 (282)
T ss_pred CCccccceeeeEeecc
Confidence 122234566666553
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.084 Score=59.55 Aligned_cols=226 Identities=13% Similarity=0.183 Sum_probs=144.8
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------------------CCceeEEEEEc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------------------SSHVPLKILSI 247 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------------------s~d~tIklWdi 247 (464)
++.++ |.| .+|+|+.. .|-|=|..+++.+.++. ...|..|.+.| +-.+-|-|||.
T Consensus 20 A~Dw~-~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccC-ccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 67786 677 89999876 57788999999998876 56799999954 23468999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEE-EEEe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLF-LTFR 322 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqll-aS~s 322 (464)
..+..+..|+++...+-.+.|.+--+ ..||+=..-.+|-|||..||+.+--..--......+.|-| |.+-| +.++
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence 99999999998777777777765422 3455545668999999999997643222223344455554 22222 2233
Q ss_pred CCeEEEEeC--------CCceEEEeccCCCC------------cCCCCe--------eEEEECCCCC--EEEEEecCCCc
Q 012410 323 NRTVAVWNF--------RGELVTSFEDHLLW------------HPDCNT--------NNIYITSDQD--LIISYCKAEPE 372 (464)
Q Consensus 323 D~TIklWd~--------~Ge~l~tl~gH~~~------------~~~~~v--------~svafSpDg~--~LaSgs~~~~~ 372 (464)
.|-+-+-++ -|+..+.-.+|... +.-|+- --.+|+|.-+ +++..
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~------ 250 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF------ 250 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe------
Confidence 555555542 25666655565540 000100 1234566533 23332
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
-.-+-|.|++=.+|+.++.--.+ .. ..-.+-=.|...-|++
T Consensus 251 -------prellv~dle~~~~l~vvpier~-----------~a---------------------kfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 251 -------PRELLVFDLEYECCLAVVPIERG-----------GA---------------------KFVDVLPDPRRDALFC 291 (1062)
T ss_pred -------ccceEEEcchhhceeEEEEeccC-----------Cc---------------------ceeEeccCCCcceEEE
Confidence 35688999999999988743322 00 3333444455567999
Q ss_pred eeCCCcEEecc
Q 012410 453 GNRHGLVHVWS 463 (464)
Q Consensus 453 gs~DgtVrlWd 463 (464)
+-.||-+.+|-
T Consensus 292 lH~nG~ltirv 302 (1062)
T KOG1912|consen 292 LHSNGRLTIRV 302 (1062)
T ss_pred EecCCeEEEEE
Confidence 99999999883
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.02 Score=64.75 Aligned_cols=224 Identities=14% Similarity=0.219 Sum_probs=139.1
Q ss_pred CCEeEEE-EeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCC
Q 012410 227 KHVQEIK-IRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 227 ~~V~~Va-fs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
++...|| |||..-+.|.|+ .+||+.....+.. -++.+++|.|- +.+|+.+ +-+.+-+|...+.+--.+..+|..
T Consensus 27 ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a 102 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPA 102 (1416)
T ss_pred CceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCC
Confidence 4455555 588777778777 4679977655432 23477889884 5566644 889999999888888888889999
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEE------EeccCCCCcCCCCeeEEEECCCCC-------EEEEEec
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVT------SFEDHLLWHPDCNTNNIYITSDQD-------LIISYCK 368 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~------tl~gH~~~~~~~~v~svafSpDg~-------~LaSgs~ 368 (464)
.+..+.|||+|..++|+. =|.|.+|-.. |+... .|.+|.. .|.--.+||+. .-++|.+
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt------l~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT------LWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee------EEEEecCCChHHhhhhhhhhccCch
Confidence 999999999999999999 8999999864 77532 2223322 23344455521 1112211
Q ss_pred CCCccc-----------------------cccCCCCeEEEEeCCCCeEEEEEccCCC-----------------------
Q 012410 369 AEPEDQ-----------------------WMEGSAGSINVSSILTGKCLAKINATNC----------------------- 402 (464)
Q Consensus 369 ~~~~~~-----------------------~~~s~DgtIklWdi~tG~cl~tl~gh~~----------------------- 402 (464)
+.-|.. .+++-+|||.--| +.|+|....+..+.
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l 255 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCL 255 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeE
Confidence 111100 3334478888877 68888776655442
Q ss_pred ---CCCcccccCC-----CC------CCcccccccccccccccc---ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 ---SPKVDDELGS-----SS------TGKSKKLNKSSYIRSTVG---EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ---~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~---~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.++.-.++ |. .+|.+-... -++.+.. +.=+.+.+++|+.-+.+|+.|-..|.|.+|-
T Consensus 256 ~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG--vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 256 IFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG--VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred EEecCCCchHHhhhhhhccccCCccCccccccccc--cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 1111110000 00 111111111 1112222 2233899999999999999999999999994
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=65.22 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=97.2
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc--------eeeccccCce---EEEEeCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL--------FESESLKWPG---FVEFDDVN 197 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l--------~~~~~~~~~~---~VaFs~pd 197 (464)
+-...++.+|++..++|..+ .| +..++--+.+.-.+....+ .....-||.+ -|.++ .+
T Consensus 14 nvkL~c~~WNke~gyIAcgG----~d------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~ 82 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGG----AD------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-EN 82 (1189)
T ss_pred CceEEEEEEcccCCeEEecc----cc------ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cc
Confidence 34578889999988998844 33 3444433322222211111 0001224444 47887 58
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEecCC----CEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~----~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
.|.|+++..+|-|.||=+..|+-.-....+ -|.++. |+.+ |+.+- +.+ + +
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sms-----------Wn~d-G~kIc-----------IvY-e--D 136 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMS-----------WNLD-GTKIC-----------IVY-E--D 136 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEE-----------EcCC-CcEEE-----------EEE-c--c
Confidence 889999999999999998887643222212 233333 4443 53322 222 2 3
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCce
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 335 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~ 335 (464)
|-+++|+-||+ |||. .++.-++-. -+.+|||.++++-+- +|.+.|+|-+|..
T Consensus 137 GavIVGsvdGN-RIwg---KeLkg~~l~------hv~ws~D~~~~Lf~~ange~hlydnqgnF 189 (1189)
T KOG2041|consen 137 GAVIVGSVDGN-RIWG---KELKGQLLA------HVLWSEDLEQALFKKANGETHLYDNQGNF 189 (1189)
T ss_pred CCEEEEeeccc-eecc---hhcchhecc------ceeecccHHHHHhhhcCCcEEEecccccH
Confidence 78888998887 7886 222222222 367999999988888 9999999977763
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.55 Score=45.87 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=132.1
Q ss_pred EeccceeehhccCCeEEeeeccc-ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 95 VAARDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~-g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
...++.|+.+.++| +-+++..+ .+....+...+ |..+..-|+=+.|++.+ | +++.+.++..-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEP 68 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecce---EEEEEEecccCEEEEEc----C-------CccEEEEchhhcc
Confidence 34588899999999 66776533 33333332222 88999888888888854 2 4677766644333
Q ss_pred CCccc-ce---------eeccccCceEEE--EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCcee
Q 012410 174 DSGFA-LF---------ESESLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 174 ~~~~~-l~---------~~~~~~~~~~Va--Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~t 241 (464)
..... .. .....++..+++ =....+..|+ .+..++|.||......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~---------------------- 125 (275)
T PF00780_consen 69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPR---------------------- 125 (275)
T ss_pred ccccccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCc----------------------
Confidence 22100 00 000011111221 0011222333 2333345554432210
Q ss_pred EEEEEcCCC-cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----------CceEEE
Q 012410 242 LKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----------MTPSAF 309 (464)
Q Consensus 242 IklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-----------~~v~sv 309 (464)
... +.++.+.-. .....++|.. ..++++..+ ...+.|+.+++....+.... ..+..+
T Consensus 126 ------~~f~~~~ke~~lp-~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 194 (275)
T PF00780_consen 126 ------NSFSKLLKEISLP-DPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGI 194 (275)
T ss_pred ------ccccceeEEEEcC-CCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEE
Confidence 001 334444422 5567788863 677777654 47788999888776653221 123444
Q ss_pred EEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 310 IFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.-.+++.+|++.. ..--.=|..|+..+ .+...|.. ...++++. ..+|+.-+ ++.|-||++.
T Consensus 195 ~~~~~~e~Ll~~~-~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~~--~pyli~~~------------~~~iEV~~~~ 255 (275)
T PF00780_consen 195 FQLSDNEFLLCYD-NIGVFVNKNGEPSR--KSTIQWSS--APQSVAYS--SPYLIAFS------------SNSIEVRSLE 255 (275)
T ss_pred EEeCCceEEEEec-ceEEEEcCCCCcCc--ccEEEcCC--chhEEEEE--CCEEEEEC------------CCEEEEEECc
Confidence 4456678887654 44445577898766 44444532 24466663 34777654 5779999999
Q ss_pred CCeEEEEEccCC
Q 012410 390 TGKCLAKINATN 401 (464)
Q Consensus 390 tG~cl~tl~gh~ 401 (464)
+|++++++.+..
T Consensus 256 ~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 256 TGELVQTIPLPN 267 (275)
T ss_pred CCcEEEEEECCC
Confidence 999999998764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.74 Score=47.45 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=120.9
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCe-EEEEecC-------CCEeEEEEeC-------------
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKIRS------------- 236 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~-~l~tl~~-------~~V~~Vafs~------------- 236 (464)
.+.-+..|+|+ |.|..-++...-++..|+|.. ..+ ++-+++. .....|+|+.
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 44556689997 899999999889999999986 232 3345551 2456777753
Q ss_pred -------CCceeEEEEEcCCCcEE---E--EEee-CCcce-eeEEEEccC-CCeEEEEe-CCCeEEEEECCCCcEEEEcc
Q 012410 237 -------SSHVPLKILSIEDGTVL---K--VFYH-LLHRN-KKVDFIEQF-NEKLLVKQ-ENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 237 -------s~d~tIklWdi~tG~~l---~--tl~~-~~~~~-~~V~F~~~~-~~~lla~s-~D~tIkIWDv~tg~~l~~l~ 300 (464)
++|+||.=|.-.-+... . .+.. ....+ +.+++-.-. +.+|.++- ..++|.++| .+-+.+.+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~~~~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFRPPPL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-CccccccC-C
Confidence 25566666654322221 1 1111 11223 455544311 24454443 677888887 44444432 1
Q ss_pred cCC-Cc-------eEEEEEcCCCcEEEEEe--------------CCeEEEEeCCCceEEEec--cCCCCcCCCCeeEEEE
Q 012410 301 TEF-MT-------PSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 301 gh~-~~-------v~sv~FspdgqllaS~s--------------D~TIklWd~~Ge~l~tl~--gH~~~~~~~~v~svaf 356 (464)
+-+ +. |.-+ -.=.++++++-- -+-|-+.|.+|++++.|. +..+- =|.|+.
T Consensus 178 g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNa-----PWG~a~ 251 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNA-----PWGLAI 251 (336)
T ss_pred CCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccC-----Cceeee
Confidence 211 11 1111 112455666532 368999999999999984 33332 368888
Q ss_pred CC------CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 357 TS------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 357 Sp------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
.| .|++|+.--- ||+|+.+|..+|+-+-.|+.-++
T Consensus 252 APa~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 252 APESFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ChhhhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 65 6888886432 99999999999999999987654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=59.09 Aligned_cols=86 Identities=8% Similarity=0.082 Sum_probs=63.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVT 337 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~ 337 (464)
..+..++-.|-.+..++.|++||.+-|||+++.... .++..|...++.|-|.| ++.-|.+++ ||.+--||..|+.+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 346666666643345555889999999999998543 36789999999999996 566788888 999999998776654
Q ss_pred ---EeccCCCCc
Q 012410 338 ---SFEDHLLWH 346 (464)
Q Consensus 338 ---tl~gH~~~~ 346 (464)
.-.+|+.|-
T Consensus 260 i~~~~s~~s~WL 271 (319)
T KOG4714|consen 260 ISNQASVISSWL 271 (319)
T ss_pred ecCccccccccc
Confidence 123555553
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.5 Score=50.05 Aligned_cols=248 Identities=15% Similarity=0.160 Sum_probs=112.6
Q ss_pred cceeehhccCCeEEeee--cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 98 RDIVFALAHSGVCAAFS--RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~--~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..+|+....+|-.++|- ..+++ +..|..+..+.....+.+|++..++=+. ++ +++.-=++++++..
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~~- 115 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEER- 115 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--EE-
T ss_pred CEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcEE-
Confidence 47888888899888875 33444 4444443333334677788877764422 22 34444466665531
Q ss_pred cccceeeccccCceEEEEe-CCCCcEEEEecC----------------------CCcEEEEeCCCCeEEEEec-CCCEeE
Q 012410 176 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 231 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs-~pdGk~LaSgs~----------------------D~tiKlWdl~tg~~l~tl~-~~~V~~ 231 (464)
.+++- .-.|.+...+. +.|+..++-.-. ...|.-=|++||+.-..+. ..|+--
T Consensus 116 --~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 116 --VVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp --EEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred --EEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 23331 12344434442 346766653211 2233344888888655555 578888
Q ss_pred EEEeCCCc-------------eeEEEEEcC-CCcEEEEEeeC-Ccce-eeEEEEccCCCeEEE-E----eCCCeEEEEEC
Q 012410 232 IKIRSSSH-------------VPLKILSIE-DGTVLKVFYHL-LHRN-KKVDFIEQFNEKLLV-K----QENENLQILDV 290 (464)
Q Consensus 232 Vafs~s~d-------------~tIklWdi~-tG~~l~tl~~~-~~~~-~~V~F~~~~~~~lla-~----s~D~tIkIWDv 290 (464)
+-|||... ..-|||-+. +|.-.+.+..+ -... --=-|.+ +|..|.- + +.+..|.=.|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEeeCC
Confidence 99998422 133677654 46555554311 0111 1112444 4555543 2 35667888899
Q ss_pred CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC----------------eEEEEeCCCceEEEeccCC----------
Q 012410 291 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHL---------- 343 (464)
Q Consensus 291 ~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~----------------TIklWd~~Ge~l~tl~gH~---------- 343 (464)
.|++-...... .+..-+--++||+++|-=+ |. -|.|+++...-...|..|.
T Consensus 272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp TT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred CCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 99876543221 1233344569999998744 53 4556777433223333332
Q ss_pred C-CcCCCCeeEEEECCCCCEEEEEec
Q 012410 344 L-WHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 344 ~-~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. -|| .+.|||||+.++=.|.
T Consensus 350 q~~hP-----hp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 350 QVTHP-----HPSFSPDGKWVLFRSD 370 (386)
T ss_dssp STT---------EE-TTSSEEEEEE-
T ss_pred ccCCC-----CCccCCCCCEEEEECC
Confidence 1 132 4789999999987775
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=64.17 Aligned_cols=116 Identities=10% Similarity=0.158 Sum_probs=86.1
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-----------Cc-EEEEEe-CCeEEEEe
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-----------NQ-LFLTFR-NRTVAVWN 330 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-----------gq-llaS~s-D~TIklWd 330 (464)
..++++|+ |.|+-|+. ..|-+-|..+-|.++++..|...|.+|-|.|. .+ +||++. .|.|-|||
T Consensus 19 ~A~Dw~~~--GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 19 NAADWSPS--GLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred cccccCcc--ceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 67888774 55555654 57888999999999999999999999988653 33 456666 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECC---CC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITS---DQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSp---Dg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+ .+-.+.-|+.|... +..+++-| |. ++|+.-.. -.+|-|||..||+-+.+..
T Consensus 96 ~~~~s~~~~l~~~~~~-----~qdl~W~~~rd~Srd~LlaIh~-----------ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDS-----VQDLCWVPARDDSRDVLLAIHG-----------SSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ehhhhhhhhhcCCCcc-----hhheeeeeccCcchheeEEecC-----------CcEEEEEEccCCceeeccc
Confidence 9 58877888888876 34455544 44 44443322 5799999999999887653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.2 Score=45.80 Aligned_cols=283 Identities=10% Similarity=0.041 Sum_probs=146.0
Q ss_pred chhhhhhccccceeeeecCCCCCcccchhhhccccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCc--
Q 012410 55 NAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-- 130 (464)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-- 130 (464)
+..++||. .+...|-.||.+..-..-|... ...+.....+ |+.|+-.. ++-+-+.+..+++..+--+.+...
T Consensus 12 ~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 12 NYTKQWRH-SFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEESSS-EEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE
T ss_pred CcEEeeee-ccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE
Confidence 34455555 2346677888777432223322 3334444444 77766654 345666665666544322222111
Q ss_pred --------------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 131 --------------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 131 --------------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
.-..+.|||||+.||.+..+...= +.+.+-+..... ...+-.. .+.+ +-
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v------~~~~~~~~~~~~--~~yp~~~--------~~~Y-Pk 150 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV------PEYPLPDYSPPD--SQYPEVE--------SIRY-PK 150 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-------EEEEEEESSST--ESS-EEE--------EEE---B
T ss_pred cCccceeccccccccccceEECCCCCEEEEEEECCcCC------ceEEeeccCCcc--ccCCccc--------cccc-CC
Confidence 125678999999999966433221 222222211111 0011111 2223 11
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEE-Eec------CCCEeEEEEeCC-------------CceeEEEEEcCCCcEEEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLY-SIS------DKHVQEIKIRSS-------------SHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~-tl~------~~~V~~Vafs~s-------------~d~tIklWdi~tG~~l~tl 256 (464)
-|..-.. -.+.|+|+++++... .+. +.-+..+.++++ ....+.+.|.++|++-..+
T Consensus 151 ~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 151 AGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp TTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred CCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 1211111 135567888877532 211 234667777653 3346778899888876655
Q ss_pred e-eCCcce---eeEEEE-ccCCCeEEEEeCCCe--EEEEECCCCcEEEEcccCCCceEE-EEEcCCCcEEE-EEe-C--C
Q 012410 257 Y-HLLHRN---KKVDFI-EQFNEKLLVKQENEN--LQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--R 324 (464)
Q Consensus 257 ~-~~~~~~---~~V~F~-~~~~~~lla~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~s-v~Fspdgqlla-S~s-D--~ 324 (464)
+ ....++ ....|. +..++.+.+...||- |.+.|..++.......| ...|.. +.+.++++.|. ++. + .
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCC
Confidence 5 222343 466676 543444444556665 44567666665544444 445655 55788877543 444 2 3
Q ss_pred eEEEEeC--C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 325 TVAVWNF--R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 325 TIklWd~--~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.-.||-+ . |.-++.|......+ .++.|||||++++-.|.
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCCc-----eEEEECCCCCEEEEEEc
Confidence 5677765 6 67788888777652 48999999999987663
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=45.11 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=132.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
..+|+.++++|.+.+-|..+|+.+-.--. ...|.+-+.= -|+.+ +++-| . ..+.+-+..+|....-|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfV-V~GCy---~------g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFV-VLGCY---S------GGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEE-EEEEc---c------CcEEEEEecchhheeee
Confidence 57889999999999999888887654211 1223333322 24443 32322 2 34555566888553322
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE-eEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV-QEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V-~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
...+ -++-..-+ +++|..+-.||.|++.-.=|.+++.|+|..+ .+.+ -+=++.| .|+.+..= +..|.+|.+
T Consensus 90 ~~~~--~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a-~t~G~vlav 162 (354)
T KOG4649|consen 90 VILE--TVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAA-ITAGAVLAV 162 (354)
T ss_pred eehh--hhccceEE---cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEE-eccceEEEE
Confidence 2222 12211133 3678899999999999999999999999876 3332 1111222 24444332 234666654
Q ss_pred EeeC--Ccce-----eeEEEEc-cC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE-EEc-CCCcEEEEEe-C
Q 012410 256 FYHL--LHRN-----KKVDFIE-QF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF-IFL-YENQLFLTFR-N 323 (464)
Q Consensus 256 l~~~--~~~~-----~~V~F~~-~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv-~Fs-pdgqllaS~s-D 323 (464)
-... .+.. ...-|.+ +. +..+..+..||.+--.| ..|+-+....+. ..+++= .-| |--|.|.-.+ |
T Consensus 163 t~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~-GpIf~~Pc~s~Ps~q~i~~~~~~ 240 (354)
T KOG4649|consen 163 TKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATK-GPIFMEPCESRPSCQQISLENEN 240 (354)
T ss_pred ccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCC-CceecccccCCCcceEEEEecCC
Confidence 3311 1111 2222322 11 23444455677776666 555444332221 111100 011 4445555555 4
Q ss_pred CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCC------------CCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 324 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD------------QDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpD------------g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
--+..-...|.++-.++-- - +..++++|+ -++|+-+ |.||.+.| +.+.
T Consensus 241 Cf~~~~p~~ghL~w~~~~g--~-----t~~vy~~p~l~F~~h~~~~S~~~ll~~~-----------s~dgkv~i--l~~~ 300 (354)
T KOG4649|consen 241 CFCAPLPIAGHLLWATQSG--T-----TLHVYLSPKLRFDLHSPGISYPKLLRRS-----------SGDGKVMI--LMTS 300 (354)
T ss_pred eEEEeccccceEEEEecCC--c-----EEEEEeCcccceeccCCCCcchhhhhhh-----------cCCCcEEE--EEec
Confidence 4444333344433222111 1 445677763 2233322 34886655 4566
Q ss_pred eEEEEEccCCC
Q 012410 392 KCLAKINATNC 402 (464)
Q Consensus 392 ~cl~tl~gh~~ 402 (464)
+-|+.+..|.+
T Consensus 301 ~sl~~~~s~~g 311 (354)
T KOG4649|consen 301 KSLAEISSNGG 311 (354)
T ss_pred ccccccccCCC
Confidence 77777766654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.5 Score=45.14 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC---Cce----EEEeccCCCCcCCCCeeEEE
Q 012410 286 QILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL----VTSFEDHLLWHPDCNTNNIY 355 (464)
Q Consensus 286 kIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~---Ge~----l~tl~gH~~~~~~~~v~sva 355 (464)
.||-+. .|..++.+.+|...+..++|||||+.|--+- .+.|.-+++. |.. ..-+.+...--|| .++
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD----G~~ 219 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD----GMA 219 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC----ceE
Confidence 455555 6888888888888899999999997665554 5777777653 322 1122222222222 456
Q ss_pred ECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCCeEEEEEccC
Q 012410 356 ITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 356 fSpDg~~LaSgs~~~~~~~~~~s~D-gtIklWdi~tG~cl~tl~gh 400 (464)
.-.||.+-+++-. + +.|..|+.. |+.+..+.-.
T Consensus 220 vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 220 VDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 6667777654332 2 278888865 8888877655
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.046 Score=62.41 Aligned_cols=169 Identities=19% Similarity=0.231 Sum_probs=105.7
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+.-+|..+++.....|.+..+ |.= .-.||..|.. |.-. ++|.|.|..+-+...++. .|.
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~~-v~i--mR~Nnr~lf~----G~t~------G~V~LrD~~s~~~iht~~-------aHs 217 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSASG-VTI--MRYNNRNLFC----GDTR------GTVFLRDPNSFETIHTFD-------AHS 217 (1118)
T ss_pred heeeeecccceeeeeeeccCCc-eEE--EEecCcEEEe----eccc------ceEEeecCCcCceeeeee-------ccc
Confidence 3444556778888888775544 333 3345677777 3344 688898877776643333 455
Q ss_pred eE-EEEeCCCCcEEEEecC---------CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee
Q 012410 189 GF-VEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 189 ~~-VaFs~pdGk~LaSgs~---------D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++ -+|+ ..|..|++++. |.-||||||.+...|--+. |+.+ |
T Consensus 218 ~siSDfD-v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~--------~~~~---P----------------- 268 (1118)
T KOG1275|consen 218 GSISDFD-VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ--------FPYG---P----------------- 268 (1118)
T ss_pred cceeeee-ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc--------cccC---c-----------------
Confidence 54 5686 89999999976 7788899987766543222 1100 0
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcE---EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL---MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~---l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
-=+.|.|--..++++.|.-|..++-|..+ ++. +.-...-...+.++.+|+.|+.+|-+. ++.|.+|--
T Consensus 269 -----~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 -----QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 01123343345666677667777766211 221 111222234588999999999999999 999999973
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.076 Score=56.71 Aligned_cols=227 Identities=13% Similarity=0.072 Sum_probs=151.0
Q ss_pred cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCC-CCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sd-dfs~L~~~ti~l~~i~~G~~~ 174 (464)
-+++-.++.+|-.+-|.-. .|..+.-...+|..+|-|++.|-+|..++|++ + | +.+|+.|+..=...
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~----d~D------hs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVE----DPD------HSVKVFDVENFDMI 89 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeecc----Ccc------cceeEEEeeccchh
Confidence 7899999999999999722 24444444467889999999999999999954 4 6 89999998665554
Q ss_pred CcccceeeccccCceEEEEeCCCC----cEEEEecCCCcEEEEeCCCCeE--EE--EecCCCEeEEEEeCC--------C
Q 012410 175 SGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKHVQEIKIRSS--------S 238 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdG----k~LaSgs~D~tiKlWdl~tg~~--l~--tl~~~~V~~Vafs~s--------~ 238 (464)
...++- --|+++++..--| .+-++...++.|-|.|-.-..| .+ .++...|-.+...|. .
T Consensus 90 nmiKL~-----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 90 NMIKLV-----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred hhcccc-----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 322211 2244554432334 3444556678888988654433 22 345667777777653 2
Q ss_pred ceeEEEEEcC------CCcEEEEEeeC---------CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--
Q 012410 239 HVPLKILSIE------DGTVLKVFYHL---------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-- 301 (464)
Q Consensus 239 d~tIklWdi~------tG~~l~tl~~~---------~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-- 301 (464)
.+-|+-|+.+ .+++.-.+++. -....++.|+| ++-++..-+.|..|++.+..+|++++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 3568999887 22232223221 11237888998 466666667999999999999987764321
Q ss_pred ------------------------------CCC-ceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEec
Q 012410 302 ------------------------------EFM-TPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 302 ------------------------------h~~-~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~ 340 (464)
|.. .-..++|---|+.|+-+.==-||+-|+ ++++++.|-
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 111 112345888899888888334999999 799988775
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0074 Score=63.29 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=65.7
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-+.+|... |.+++|||... +|..+|. +.+|||-|++|-.|+.++..|.
T Consensus 188 ~lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~--------------- 236 (463)
T KOG1645|consen 188 ILPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN--------------- 236 (463)
T ss_pred cccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC---------------
Confidence 45566666 78999999998 7877776 9999999999999999998885
Q ss_pred ccccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
.+||.+|+-| .+.||.|-..|.|.++|+
T Consensus 237 --------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 --------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred --------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 8999999875 578999999999999985
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.4 Score=47.85 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=103.2
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEE
Q 012410 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 124 ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
+.+-.++ +-.+.|+|+++.|.+|. .... .+ ++.=..|+.....++-. ++-+..|++- -||+++++
T Consensus 17 l~g~~~e-~SGLTy~pd~~tLfaV~--d~~~-------~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl~ 81 (248)
T PF06977_consen 17 LPGILDE-LSGLTYNPDTGTLFAVQ--DEPG-------EI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVLS 81 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEE--TTTT-------EE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEEE
T ss_pred CCCccCC-ccccEEcCCCCeEEEEE--CCCC-------EE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEEE
Confidence 3333555 89999999999898866 3222 33 22225788765444322 2445589997 68888887
Q ss_pred ecCCCcEEEEeCCC--CeE----EEEec-------CCCEeEEEEeCC--------CceeEEEEEcCC---CcEEEEEee-
Q 012410 204 SAQDSIYKVFDLKN--YTM----LYSIS-------DKHVQEIKIRSS--------SHVPLKILSIED---GTVLKVFYH- 258 (464)
Q Consensus 204 gs~D~tiKlWdl~t--g~~----l~tl~-------~~~V~~Vafs~s--------~d~tIklWdi~t---G~~l~tl~~- 258 (464)
.-.++++-+.++.. ... ...+. ...+-.|++.|. ...|.+|+.+.. +..+.....
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 66689999999832 111 12222 135889999874 446777877753 333332221
Q ss_pred -------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE--ccc-------CCCceEEEEEcCCCcEEEEEe
Q 012410 259 -------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT-------EFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 259 -------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--l~g-------h~~~v~sv~FspdgqllaS~s 322 (464)
...-..+++|.|..+..++-+++.+.|-+.| .+|+.+.. |.. ....+..++|.|+|.+.+++-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 1123378999997554555588999999999 88887663 333 124689999999999998875
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.59 Score=47.26 Aligned_cols=130 Identities=8% Similarity=0.063 Sum_probs=78.9
Q ss_pred CeEEEEECCCC----cEEEEc--ccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCc-eEEEeccCCCCcCCCCeeEE
Q 012410 283 ENLQILDVRNA----ELMEVS--RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGE-LVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg----~~l~~l--~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge-~l~tl~gH~~~~~~~~v~sv 354 (464)
|.|.++++... ..++.. ......|.+++-- +|. |+.+.+++|.+|++ ..+ ++..-.-+.. +..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~------~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSP------FYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BS------SSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecce------EEEE
Confidence 78999999885 223222 2234678887633 555 66666799999999 455 4442222222 1233
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
.++.-+++|+.|.. .+.|-+.... .++.+..+.....
T Consensus 134 sl~~~~~~I~vgD~-----------~~sv~~~~~~~~~~~l~~va~d~~------------------------------- 171 (321)
T PF03178_consen 134 SLSVFKNYILVGDA-----------MKSVSLLRYDEENNKLILVARDYQ------------------------------- 171 (321)
T ss_dssp EEEEETTEEEEEES-----------SSSEEEEEEETTTE-EEEEEEESS-------------------------------
T ss_pred EEeccccEEEEEEc-----------ccCEEEEEEEccCCEEEEEEecCC-------------------------------
Confidence 34444678888764 6777777432 3454544432211
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-.+|+++.|-+|++.++.+..+|.|.+..
T Consensus 172 -~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 172 -PRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp --BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred -CccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 01789999988888999999999998763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.9 Score=44.96 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=130.6
Q ss_pred eEEEEEEeeCCCEEEEE-EeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce--EEEEeCCCCcEEEEecCC
Q 012410 131 VIRSLFYNKNNDSLITV-SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG--FVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~sv-Sa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~--~VaFs~pdGk~LaSgs~D 207 (464)
.+....+||||+.+|.. |.-|++. .++++.|+++|+... . .+..+. +++|. +||+.|.+...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l~------d-~i~~~~~~~~~W~-~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFLP------D-GIENPKFSSVSWS-DDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEEE------E-EEEEEESEEEEEC-TTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCcC------C-cccccccceEEEe-CCCCEEEEEEeC
Confidence 34467899999988854 4445555 789999999997632 1 111121 49997 899999888765
Q ss_pred Cc-----------EEEEeCCCCe----EEEEecCCC--EeEEEEeCC-----------Cc-eeEEEEEcCCC----cEEE
Q 012410 208 SI-----------YKVFDLKNYT----MLYSISDKH--VQEIKIRSS-----------SH-VPLKILSIEDG----TVLK 254 (464)
Q Consensus 208 ~t-----------iKlWdl~tg~----~l~tl~~~~--V~~Vafs~s-----------~d-~tIklWdi~tG----~~l~ 254 (464)
.. |+.|.+.++. +++.-.+.. ...+..+++ .+ ..|.+.+..++ ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 52 7778877663 455444333 445555542 33 56788888765 2233
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCc---EEEEcccCCCceEEEEEcC-CCcEEEEEe-CC
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR 324 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~ 324 (464)
.+. ........|.. .++.+.+-+ .++.|---++.+.. -..++..|...+.-..+.. .+.++++-. |+
T Consensus 271 ~l~~~~~~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 332 21111123332 246555522 44566666777765 2335555554322222333 445666666 65
Q ss_pred --eEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 325 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 325 --TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.|+++|+. |.....+.--... .|..+...++++.+ ++.+. --.=.+|.-+|+.+|+.
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEAG----SVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSSS----EEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCE
T ss_pred ccEEEEEECCCCcEEeeecCCcce----EEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCE
Confidence 78889997 8877665543322 14555555655543 33332 11237899999999886
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.31 Score=51.79 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=38.0
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 295 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~ 295 (464)
.|+|++.. |+.+.++.-..+++-.+.|.. ++.|++=..||+++++|+. |+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 36666664 777777663336777888866 4888888899999999976 555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.25 Score=51.41 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred eEEEEECCC--Cc--EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCC------c---eEEEeccCC--CCcCC
Q 012410 284 NLQILDVRN--AE--LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 348 (464)
Q Consensus 284 tIkIWDv~t--g~--~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~G------e---~l~tl~gH~--~~~~~ 348 (464)
.|.+++-.+ |+ ..+++......+..++|.++| ++++..+...++.|..| + ++..|.... ..+.
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~- 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS- 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc-
Confidence 677776443 33 234555555678999999999 77765566556667633 2 233354321 0111
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 012410 349 CNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs 367 (464)
.+.++|.|||.+.++-+
T Consensus 126 --~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 126 --LNSLAWGPDGWLYFNHG 142 (367)
T ss_pred --ccCceECCCCCEEEecc
Confidence 56899999999988765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.097 Score=59.10 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
+-+|.++||||.||+|-|-.+-|.+...++. ...+.+|+++|+ |+.+..
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd------------------------------~~~~~s 129 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPD------------------------------FSRQQS 129 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccc------------------------------hhhhhh
Confidence 3689999999999999888887766554443 345555555554 111123
Q ss_pred CeEEEEeCCCeEEEEECCC--CcEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEecc-CCCCcCC
Q 012410 274 EKLLVKQENENLQILDVRN--AELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED-HLLWHPD 348 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~t--g~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~g-H~~~~~~ 348 (464)
.+.++|+.-| +-|.. ++ |.... ++..-.+.|.++. -.|.++|=++|--||++|. .++.+..++- |....++
T Consensus 130 k~fv~GG~ag-lvL~e-r~wlgnk~~v~l~~~eG~I~~i~--W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 130 KQFVSGGMAG-LVLSE-RNWLGNKDSVVLSEGEGPIHSIK--WRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred hheeecCcce-EEEeh-hhhhcCccceeeecCccceEEEE--ecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcc
Confidence 4566666555 55543 11 22112 2333345777774 4688999999777999999 6777776553 3332222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.--..+.|.++..+++-= .-+|+|-.|.
T Consensus 206 ~fpphl~W~~~~~LVIGW-------------~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVIGW-------------GDSVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEEec-------------CCeEEEEEEe
Confidence 222346777776666543 4578888876
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=4 Score=46.44 Aligned_cols=233 Identities=10% Similarity=0.160 Sum_probs=125.0
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC---
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--- 207 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D--- 207 (464)
.+..+.+||||+.|+..... .+-.-.++.+-++.+|+.... .... .+ .+++|+ +||+.|.+...|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~-----~G~E~~~l~v~d~~tg~~l~~--~i~~--~~--~~~~w~-~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF-----LSRRQYGIRFRNLETGNWYPE--LLDN--VE--PSFVWA-NDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecC-----CCcEEEEEEEEECCCCCCCCc--cccC--cc--eEEEEe-eCCCEEEEEEecCCC
Confidence 46677889999988773211 222337788888888874211 1111 11 369997 899988887664
Q ss_pred ---CcEEEEeCCCC----eEEEEecCCCEe-EEEE-----------eCCCceeEEEEEc--CCCcEEEEEeeCCcceeeE
Q 012410 208 ---SIYKVFDLKNY----TMLYSISDKHVQ-EIKI-----------RSSSHVPLKILSI--EDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 208 ---~tiKlWdl~tg----~~l~tl~~~~V~-~Vaf-----------s~s~d~tIklWdi--~tG~~l~tl~~~~~~~~~V 266 (464)
..+.++++.|+ .+++.-.++..+ ++.. +...+..+.+++. .+|+....+........
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 273 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-- 273 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--
Confidence 35667788888 345443233222 1111 1234456788884 35653222322111112
Q ss_pred EEEccCCCeEEEEe--CCCeEEEE--ECC-CCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEE
Q 012410 267 DFIEQFNEKLLVKQ--ENENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVT 337 (464)
Q Consensus 267 ~F~~~~~~~lla~s--~D~tIkIW--Dv~-tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~ 337 (464)
.+. ..++.+...+ ...+-+|. ++. +++...++.... ..+.++.+. .+.++++.. ++.-+|+-+ .+..+.
T Consensus 274 ~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 274 SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 222 2345555543 22344444 554 333333333323 367777777 557777777 887666654 455555
Q ss_pred Eec-cCCCCcCCCCeeEEEEC--CC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 338 SFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 338 tl~-gH~~~~~~~~v~svafS--pD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
.+. +.... +..+.++ ++ +.++++.+. ...-++|..+|+.+++
T Consensus 352 ~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 554 22211 2233445 44 446666653 1235788899998876
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0014 Score=71.77 Aligned_cols=186 Identities=18% Similarity=0.148 Sum_probs=117.3
Q ss_pred ceeehhccCCeEEeeecccccEe-eEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccC--CCC
Q 012410 99 DIVFALAHSGVCAAFSRETNRRI-CFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPD 174 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l-~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~ 174 (464)
.|++++...|.|.+-.+.+-..- +.+...+...-.+++|++. -..||. +-+. +-.--.++|||+.++ .+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAa----gldk--hrnds~~~Iwdi~s~ltvPk 144 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAA----GLDK--HRNDSSLKIWDINSLLTVPK 144 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHh----hhhh--hcccCCccceecccccCCCc
Confidence 56666777776666542221111 2233446666778888885 234444 2221 001146789999988 332
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEEecCCCEeEEEEeC--------CCceeEEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~--------s~d~tIklW 245 (464)
.. ++|..+.+.-..+|.+. -|.++|.+|...+.|+++|+.. ..-...+.+..|+.+.+.| ..|+-|.||
T Consensus 145 e~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiw 222 (783)
T KOG1008|consen 145 ES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIW 222 (783)
T ss_pred cc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeec
Confidence 22 33333333334478886 7999999999999999999873 2222344466788888876 378899999
Q ss_pred EcC--CCcEEEEEeeCCc----ceeeEEEEccCCCeEEEEe-CCCeEEEEECCC
Q 012410 246 SIE--DGTVLKVFYHLLH----RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 292 (464)
Q Consensus 246 di~--tG~~l~tl~~~~~----~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t 292 (464)
|.+ --..++++.+... ++..++++|-.++.+++-+ .-+||+++|++.
T Consensus 223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 932 1123333333212 3689999998888888876 669999999875
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.34 Score=42.79 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=50.4
Q ss_pred eeEEEEccCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEe
Q 012410 264 KKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSF 339 (464)
Q Consensus 264 ~~V~F~~~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl 339 (464)
.++++...++ ..|++||+|..||+|+ ..+++.... ++..|.+++-++.++ |+-+- +|||-+++-.-++.+.=
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRiK 78 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRIK 78 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeeec
Confidence 4445544332 5799999999999997 446665544 346788888777755 66666 99999998544443333
Q ss_pred ccC
Q 012410 340 EDH 342 (464)
Q Consensus 340 ~gH 342 (464)
..|
T Consensus 79 SK~ 81 (111)
T PF14783_consen 79 SKN 81 (111)
T ss_pred cCC
Confidence 344
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.94 E-value=3.5 Score=45.42 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=109.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEe----------EEEE------eCCCceeEEEEEcCCCcEEEEEe
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQ----------EIKI------RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~----------~Vaf------s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+|.+.+ ++.++.|.=.|.+||+.+-+... ..+. .+++ -.+.|..|.-+|.+||+.+-...
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 454433 45556677778888887754321 1111 1222 22467788888999999998765
Q ss_pred eCCcc-eeeEEEEcc-CCCeEEEEe------CCCeEEEEECCCCcEEEEccc---C------------------------
Q 012410 258 HLLHR-NKKVDFIEQ-FNEKLLVKQ------ENENLQILDVRNAELMEVSRT---E------------------------ 302 (464)
Q Consensus 258 ~~~~~-~~~V~F~~~-~~~~lla~s------~D~tIkIWDv~tg~~l~~l~g---h------------------------ 302 (464)
...+. -..+.-.|. .++.++++. .++.|.-.|++||+.+=.... .
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 21011 111111110 246777764 278999999999998743211 1
Q ss_pred ----CCceEE-EEEcCCCcEEEEEe-C-----C-----------eEEEEeC-CCceEEEec--cCCCCcCCCCeeEEEE-
Q 012410 303 ----FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIYI- 356 (464)
Q Consensus 303 ----~~~v~s-v~FspdgqllaS~s-D-----~-----------TIklWd~-~Ge~l~tl~--gH~~~~~~~~v~svaf- 356 (464)
...+|. .++-|+..++--+. + + +|---|. +||++-.|+ -|..|..|+.--.+-+
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 012332 23444444443332 2 2 3444567 699876555 5777877653233333
Q ss_pred -CCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 357 -TSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 357 -SpDg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
..||+ .++-+.+ +|-+.+-|-.|||.|.
T Consensus 308 ~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 308 LKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred eccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 35887 8888887 9999999999999874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0017 Score=71.23 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=102.8
Q ss_pred cceeeEEEEccCCCeEEEEe----CCCeEEEEECCCC--cEEEE--ccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 261 HRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELMEV--SRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg--~~l~~--l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
....+++|+|.|-+.|++|= .|-.++|||+.++ ...+. +.+ --..+.++.+..|-+++++|. .+.|++.|
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence 34477888887655666652 6788999999998 33221 111 223455888889999999999 89999999
Q ss_pred CCCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeC-CC-CeEEEEEccCCCCCCcc
Q 012410 331 FRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-LT-GKCLAKINATNCSPKVD 407 (464)
Q Consensus 331 ~~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi-~t-G~cl~tl~gh~~~~~~~ 407 (464)
++-.|.+.-+-.+.. |..+.+.| .+.+++|.+ ||-|-+||. .. ...+.++....+
T Consensus 183 lRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N----- 240 (783)
T KOG1008|consen 183 LRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNEN----- 240 (783)
T ss_pred hhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCC-----
Confidence 976665544434433 55678899 999999876 899999993 11 122222222211
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeC-CCcEEecc
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNR-HGLVHVWS 463 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~-DgtVrlWd 463 (464)
..-+.+..++|.|-.. +|++-++ -++|++.|
T Consensus 241 -------------------------~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 241 -------------------------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred -------------------------CcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 1112688999999765 3444444 46788776
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0014 Score=74.07 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=65.9
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE-----------EcCCCcEEEEEe-CCeEEEEeC--CCc----eE
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI-----------FLYENQLFLTFR-NRTVAVWNF--RGE----LV 336 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~-----------FspdgqllaS~s-D~TIklWd~--~Ge----~l 336 (464)
++-.+-.|++|+|.++.+.. ...+++|..++..++ .||||..||..+ ||.++.|.+ +|+ |+
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 33444556666665533322 244555665554433 489999999999 999999986 575 67
Q ss_pred EEeccCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpD---------g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+..+-|+.. +. |-.+ |..+ =.+++.+++ -..-+|+|.-..-+|+
T Consensus 276 hewkphd~~-p~--vC~l-c~~~~~~~v~i~~w~~~Itttd----------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 276 HEWKPHDKH-PR--VCWL-CHKQEILVVSIGKWVLRITTTD----------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred hccCCCCCC-Cc--eeee-eccccccCCccceeEEEEeccc----------CCcceeEeeccchhhh
Confidence 788888731 11 2222 2222 135666654 2567899998888887
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.4 Score=45.06 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=85.0
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe-eC--------CcceeeEEEEc
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY-HL--------LHRNKKVDFIE 270 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~-~~--------~~~~~~V~F~~ 270 (464)
.|+|++. .|+++.++. .+.|-.+.|+.+ .|+++++.|.. |+. .|. +. ..++..+.|..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCC
Confidence 5999984 688887665 578888888764 68999999987 766 332 10 01111112211
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCc-E--EEEc---cc-----CCC-ceEE-EEEcCCCcEEEEEeCCeEEEEeCCCceEE
Q 012410 271 QFNEKLLVKQENENLQILDVRNAE-L--MEVS---RT-----EFM-TPSA-FIFLYENQLFLTFRNRTVAVWNFRGELVT 337 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~-~--l~~l---~g-----h~~-~v~s-v~FspdgqllaS~sD~TIklWd~~Ge~l~ 337 (464)
+|..+..+ ++.| +-+.+.+ . .+.+ .+ |.. ..+. ..++.+....+... .|+.+.
T Consensus 138 --~GivvLt~-~~~~--~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---------~g~~i~ 203 (410)
T PF04841_consen 138 --NGIVVLTG-NNRF--YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---------NGETIY 203 (410)
T ss_pred --CCEEEECC-CCeE--EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---------cCCEEE
Confidence 23332232 2222 2222221 1 1111 11 000 0000 12334444333333 444444
Q ss_pred EeccCCC-Cc-CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 338 SFEDHLL-WH-PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 338 tl~gH~~-~~-~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.+..|.. .+ .+..+..+++||+|++||-... +|++.+.+..-.+++..+.-.
T Consensus 204 ~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~-----------~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 204 IIDENSFKQIDSDGPIIKIAVSPNGKFIALFTD-----------SGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EEEccccccccCCCCeEEEEECCCCCEEEEEEC-----------CCCEEEEECcccceeEEeecC
Confidence 3333321 00 0012678999999999999876 899988887666777666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=58.04 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=120.7
Q ss_pred cchhhhccccceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 012410 80 FVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 80 ~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~ 159 (464)
...+.+..+..+.....++..+|.+.+.|.+.+++ .+|.. .-|+.|... ..+|++++| +++|
T Consensus 31 n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~-~~~~~--~~~~~~s~~------~~~Gey~as----CS~D----- 92 (846)
T KOG2066|consen 31 NLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTT-CQGNP--KTNFDHSSS------ILEGEYVAS----CSDD----- 92 (846)
T ss_pred cccHHHHhhhHHHHHHhhcceeeeccccceEEEEe-cCCcc--ccccccccc------ccCCceEEE----ecCC-----
Confidence 33444445555555666799999999999999998 66766 334656553 778999999 7788
Q ss_pred eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC-----CcEEEEecCCCcEEEEeCC-CCeEEE-Eec--CCCEe
Q 012410 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN-----GKVLTYSAQDSIYKVFDLK-NYTMLY-SIS--DKHVQ 230 (464)
Q Consensus 160 ~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd-----Gk~LaSgs~D~tiKlWdl~-tg~~l~-tl~--~~~V~ 230 (464)
.++-|-.+-+++.. ++...-..+.+|+|+ || .+..++|+.-| +-|..=. =|.... .++ .+.|.
T Consensus 93 -Gkv~I~sl~~~~~~-----~~~df~rpiksial~-Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 93 -GKVVIGSLFTDDEI-----TQYDFKRPIKSIALH-PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred -CcEEEeeccCCccc-----eeEecCCcceeEEec-cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 78888777666642 111122445599996 88 45667787776 5454311 011111 244 47899
Q ss_pred EEEEeCC-----CceeEEEEEcCCCcEEEEEeeCCcce------eeEEEEccCCCeEEEEeCCCeEEEEECCC
Q 012410 231 EIKIRSS-----SHVPLKILSIEDGTVLKVFYHLLHRN------KKVDFIEQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 231 ~Vafs~s-----~d~tIklWdi~tG~~l~tl~~~~~~~------~~V~F~~~~~~~lla~s~D~tIkIWDv~t 292 (464)
+|.+..+ +|.-||+.|+.+++.+..++-....+ ..+.|.+ +..|+=|..-+|+|--++.
T Consensus 165 ~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~---~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 165 SIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD---EDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecC---CCeEEEecCCeEEEEEEec
Confidence 9999764 78889999999999888776322333 3344433 3444445556899888873
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.58 Score=50.48 Aligned_cols=130 Identities=12% Similarity=0.248 Sum_probs=75.4
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE-eCCCceEEEecc
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFED 341 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW-d~~Ge~l~tl~g 341 (464)
.++.++|. ++.++-..|+.--|+......-... ..-..++|.+.++ +|.-. +++|+|. |++.+-+.++.-
T Consensus 36 ~~ls~npn--gr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 36 QSLSHNPN--GRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp SEEEE-TT--SSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----
T ss_pred eeEEECCC--CCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC
Confidence 77788883 4444446677777877443333332 2234678999666 66666 8999995 665444333432
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.. ++..|.- |.+|+..+ ++.|-++|+++++.++.+.-.
T Consensus 108 ~~------~~~~If~---G~LL~~~~------------~~~i~~yDw~~~~~i~~i~v~--------------------- 145 (443)
T PF04053_consen 108 PF------SVEKIFG---GNLLGVKS------------SDFICFYDWETGKLIRRIDVS--------------------- 145 (443)
T ss_dssp SS-------EEEEE----SSSEEEEE------------TTEEEEE-TTT--EEEEESS----------------------
T ss_pred Cc------ccceEEc---CcEEEEEC------------CCCEEEEEhhHcceeeEEecC---------------------
Confidence 21 1445544 89888765 568999999999999998532
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
.|..|.||+||+.+|=.+.|..
T Consensus 146 ---------------~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 146 ---------------AVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp ---------------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred ---------------CCcEEEEECCCCEEEEEeCCeE
Confidence 5788999999999998886643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.5 Score=42.68 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=80.4
Q ss_pred eeEEEEEcCCC----cEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccC-CCceEEEEE
Q 012410 240 VPLKILSIEDG----TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 240 ~tIklWdi~tG----~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh-~~~v~sv~F 311 (464)
+.|.++++.+. ..++.+. ...+.+.+++- ++++|+++. ++.|.+|++...+ ++..-.-+ ...+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~---~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~- 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICS---FNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS- 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEE---ETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhh---hCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe-
Confidence 88999999884 2333221 12356666664 457855544 5899999999998 66543322 12455543
Q ss_pred cCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 312 LYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
..+.+++.|. -+.|-+..+ .++.+..+.......+ +.++.|-+|++.++.+.. +|.|.++..
T Consensus 137 -~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~---v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~ 201 (321)
T PF03178_consen 137 -VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW---VTAAEFLVDEDTIIVGDK-----------DGNLFVLRY 201 (321)
T ss_dssp -EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE---EEEEEEE-SSSEEEEEET-----------TSEEEEEEE
T ss_pred -ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc---EEEEEEecCCcEEEEEcC-----------CCeEEEEEE
Confidence 3355788777 777777754 4665555554333222 778888877787777765 899988876
Q ss_pred C
Q 012410 389 L 389 (464)
Q Consensus 389 ~ 389 (464)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 4
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.016 Score=56.94 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=85.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-------CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCC
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 344 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-------dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~ 344 (464)
.+++.+.|++++=.+++--+ +.+.+.-|-. -+..++.|. |+.|.+|+.. |+..-....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k---------~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK---------ESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhh---------hhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 35667888888877765433 2222222222 234466677 9999999874 554332222222
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+ ..-|....++.+...++. ||-||.|+++-++-+-....|+.
T Consensus 103 ~i----~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 SI----DLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred cc----eeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 21 233444555556666654 99999999999998888877773
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEe--eCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSg--s~DgtVrlWd~ 464 (464)
+.+..+..+--+..|+++ |.|.+++.|++
T Consensus 146 -----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -----------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 145556666677788888 89999999974
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.54 Score=55.46 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=74.7
Q ss_pred EEEEEcCCCcEEEEE-----eC-CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 307 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 307 ~sv~FspdgqllaS~-----sD-~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+|.|--||++||.+ .+ ++||+||-+|.+-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999993 36 8999999887764433322221 125788999999998654 2347
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE---eeCCC
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHG 457 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS---gs~Dg 457 (464)
++|.++. .+|-- |..++ .. .++.-..|..|+|+.++..||. .....
T Consensus 266 ~~IvffE-rNGL~------hg~f~----l~--------------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGEFV----LP--------------------FPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred CcEEEEe-cCCcc------ccccc----cC--------------------CcccccchheeeecCCCCceeeeecccccc
Confidence 7899987 35431 22100 00 0000013889999999999997 56666
Q ss_pred cEEecc
Q 012410 458 LVHVWS 463 (464)
Q Consensus 458 tVrlWd 463 (464)
.|+||-
T Consensus 315 ~v~lwt 320 (1265)
T KOG1920|consen 315 LVQLWT 320 (1265)
T ss_pred eEEEEE
Confidence 699993
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.69 Score=40.87 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=42.7
Q ss_pred eEEEEEcC---CC-cEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 306 PSAFIFLY---EN-QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 306 v~sv~Fsp---dg-qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
|.|+++.+ || .-|+.|| |..||+++ ..+++..+.-+.. |.+++-.+.++ ++-+-. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~-~~e~~~Ei~e~~~------v~~L~~~~~~~-F~Y~l~-----------N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK-GDEIVAEITETDK------VTSLCSLGGGR-FAYALA-----------N 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe-CCcEEEEEecccc------eEEEEEcCCCE-EEEEec-----------C
Confidence 56666553 32 3567777 99999999 5688888877754 45665555555 443433 8
Q ss_pred CeEEEEe
Q 012410 381 GSINVSS 387 (464)
Q Consensus 381 gtIklWd 387 (464)
|||.+++
T Consensus 63 GTVGvY~ 69 (111)
T PF14783_consen 63 GTVGVYD 69 (111)
T ss_pred CEEEEEe
Confidence 9999887
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.45 Score=49.62 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC-----------eEEEEeC-CC--ceEEEeccCCCC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----------TVAVWNF-RG--ELVTSFEDHLLW 345 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~-----------TIklWd~-~G--e~l~tl~gH~~~ 345 (464)
+--+|++.|+.+|+.+...-.. .....+.|++||+.|.-.. |. .|..|.+ ++ +-.-.|++....
T Consensus 148 e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp SEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred ceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 4467999999999877632111 1122389999999887776 44 2788887 43 223445544432
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTG 391 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D-gtIklWdi~tG 391 (464)
.. .-++..|+||++|+-.+.+ +.+ ..|.+-|+.++
T Consensus 227 ~~---~~~~~~s~d~~~l~i~~~~--------~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 227 FW---FVSVSRSKDGRYLFISSSS--------GTSESEVYLLDLDDG 262 (414)
T ss_dssp TS---EEEEEE-TTSSEEEEEEES--------SSSEEEEEEEECCCT
T ss_pred cE---EEEEEecCcccEEEEEEEc--------cccCCeEEEEecccc
Confidence 10 3478999999998876642 223 56777777664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.059 Score=59.40 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=58.0
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCee-EEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~-svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+.-+.++|.-.+||..- +|.|-+.-+.-+.+-++.=|... |. +++|-|||++||-|-+ ||||
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~k-----------dG~I 86 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFK-----------DGTI 86 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc-----cceeeeecCCCCEEEEEec-----------CCeE
Confidence 44566899999999988 88776655554555555433333 44 8999999999999987 9999
Q ss_pred EEEeCCCCeEEEE
Q 012410 384 NVSSILTGKCLAK 396 (464)
Q Consensus 384 klWdi~tG~cl~t 396 (464)
+|-|+++|.-+..
T Consensus 87 ~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 87 RLHDVEKGGRLVS 99 (665)
T ss_pred EEEEccCCCceec
Confidence 9999999988776
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.42 Score=54.92 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc------CCCeEEEEeCCCeEEEEECCCC-cEEEEcccC----CCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDVRNA-ELMEVSRTE----FMT 305 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~------~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh----~~~ 305 (464)
.....|.-.|+++|+++....-+ ..+.=+.|.|. .+++.+.|=.+..|-.||.+-. ..+....+| ...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34567888999999999988732 11112344443 2467778878899999999974 322222222 123
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCce-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~-l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
-.+++-+-+|. ||.|| +|-|||+|-.|.- .+.|.|=..+ |..|..|.||++|+.-| +..+
T Consensus 580 Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc------------~tyL 641 (794)
T PF08553_consen 580 FSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATC------------KTYL 641 (794)
T ss_pred ceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEee------------cceE
Confidence 45667778887 45566 9999999975543 3455554455 78999999999999988 6788
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
=|.+..
T Consensus 642 lLi~t~ 647 (794)
T PF08553_consen 642 LLIDTL 647 (794)
T ss_pred EEEEEe
Confidence 888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.3 Score=49.44 Aligned_cols=196 Identities=8% Similarity=0.052 Sum_probs=96.3
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-C
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-S 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-~ 208 (464)
..+.+.+.||||+.++.+-.-... .+...-.||-+..|... .++.... ....-.|| |||+.|++.+.. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~----~~d~~s~Lwv~~~gg~~--~~lt~g~---~~t~PsWs-pDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRG----APDPASSLWVGPLGGVA--VQVLEGH---SLTRPSWS-LDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCC----CCCcceEEEEEeCCCcc--eeeecCC---CCCCceEC-CCCCceEEEecCcc
Confidence 457899999999998875421110 11134455555433322 2222221 12256786 899888876532 1
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE-
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI- 287 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI- 287 (464)
..++.+- +....+.+.++..|+.-+.+. ..+.++.++| ++.+++.-. ++.|.+
T Consensus 420 ~~~v~~~---------------------~~~gql~~~~vd~ge~~~~~~---g~Issl~wSp-DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 420 VVRVIRD---------------------PATGQLARTPVDASAVASRVP---GPISELQLSR-DGVRAAMII-GGKVYLA 473 (591)
T ss_pred eEEEecc---------------------CCCceEEEEeccCchhhhccC---CCcCeEEECC-CCCEEEEEE-CCEEEEE
Confidence 1222211 111222233444444333111 3456666666 344444432 244443
Q ss_pred --EECCCCc-----EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECC
Q 012410 288 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 288 --WDv~tg~-----~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
=.-..|+ .++...+-...+.+++|.+++.+++...+....+|-+ +|..-..+.+... +. .|-+|+=+|
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~-~~--~v~~vaa~~ 550 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNL-SA--PVVAVAASP 550 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCc-cC--ceEEEecCC
Confidence 3333444 1222222333467899999999875554444456765 6776554344322 21 166677665
Q ss_pred CCCEEEE
Q 012410 359 DQDLIIS 365 (464)
Q Consensus 359 Dg~~LaS 365 (464)
+ .+++.
T Consensus 551 ~-~iyv~ 556 (591)
T PRK13616 551 S-TVYVT 556 (591)
T ss_pred c-eEEEE
Confidence 3 44443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.43 Score=49.13 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEeCCCce---EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEec
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 368 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~---l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~ 368 (464)
..|++++|.|||++|++-..|+|++.+.+|.. +..+..-.. ......-.++|+|+ +.+.++++.
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~-~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFA-DGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBT-STTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccc-cccCCcccceeccccCCCCEEEEEEEc
Confidence 36899999999999998779999999976665 334421100 11123678999995 787787774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.47 Score=54.23 Aligned_cols=103 Identities=8% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CC-----eEEEEeCC----C---ceE-
Q 012410 272 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR-----TVAVWNFR----G---ELV- 336 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~-----TIklWd~~----G---e~l- 336 (464)
.++.++.|+.||.|-+.| ++-+.++-++.+...+..+...-++ ..|+|-. |. ++||||++ + +|+
T Consensus 34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 357888899999999999 7777778888887664444455555 4666655 43 69999972 2 255
Q ss_pred -EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 337 -TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 337 -~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
..+..|.++.....+.+++.|.|=+++|.|-. +|+|-..
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~-----------nG~V~~~ 152 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT-----------NGLVICY 152 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEec-----------CcEEEEE
Confidence 23444444322223778999999999999976 8888765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.047 Score=57.48 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=64.6
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC--Cc
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~--Ge 334 (464)
+..-++.++|+|..+|.+..++.+.+|+|-|+++..+......| ..+|+++|--|..-++=++ +|.|-|+|++ -.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 33566999999965566777999999999999999999998888 7899999986666555555 9999999983 33
Q ss_pred eEEEecc
Q 012410 335 LVTSFED 341 (464)
Q Consensus 335 ~l~tl~g 341 (464)
.+..|.+
T Consensus 271 ~~~e~~a 277 (463)
T KOG1645|consen 271 PLMELVA 277 (463)
T ss_pred hHhhhhh
Confidence 4445544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=49.72 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=47.9
Q ss_pred CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEE---eC-CCceEEEec-----cCCCCcCCCCee
Q 012410 282 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW---NF-RGELVTSFE-----DHLLWHPDCNTN 352 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklW---d~-~Ge~l~tl~-----gH~~~~~~~~v~ 352 (464)
.+.+.+.++..|+..+ .....|.++.|||||..+|--.++.|.|= .- .|+ .++. ....- -.+.
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~---~~~~ 500 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLG---DTAV 500 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccC---Cccc
Confidence 3455555887777655 22346999999999999988777766552 22 365 2221 01110 0145
Q ss_pred EEEECCCCCEEEEE
Q 012410 353 NIYITSDQDLIISY 366 (464)
Q Consensus 353 svafSpDg~~LaSg 366 (464)
++.|.+|+.+++..
T Consensus 501 ~l~W~~~~~L~V~~ 514 (591)
T PRK13616 501 SLDWRTGDSLVVGR 514 (591)
T ss_pred cceEecCCEEEEEe
Confidence 78899999977553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.91 Score=47.22 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=58.0
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCC-----Cc---EEEEccc----CCCceEEEEEcCCCcEEEEEeC-----
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-----AE---LMEVSRT----EFMTPSAFIFLYENQLFLTFRN----- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-----g~---~l~~l~g----h~~~v~sv~FspdgqllaS~sD----- 323 (464)
.....++|.+. + +++++.++..++.|... ++ ++..+.. +...+..++|.|||.+.++-++
T Consensus 72 ~~p~Gi~~~~~--G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVG--G-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecC--C-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 34467777663 5 77777666555656432 12 2222322 2345788999999999887552
Q ss_pred ---------------CeEEEEeCCCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 ---------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ---------------~TIklWd~~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+.|--.|.+|..+..+ .|+.+ .+.++|+|+|+++++-.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCCEEEEcc
Confidence 2233334444333333 34433 47899999999988744
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.8 Score=43.96 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=115.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEee-CCC---------EEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NND---------SLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~---------~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+.+|-..++||...|-|..+-.++...+- .....-|=+.+| ++. .|++ ...+ .-...+|
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlav----t~~~-----~~~~~~w 173 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAV----TKNP-----YSSTEFW 173 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEE----ccCC-----CCcceeh
Confidence 389999999999999999888777776532 323223333333 332 2222 1111 1223456
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCE-eEEEEe-------C
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHV-QEIKIR-------S 236 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V-~~Vafs-------~ 236 (464)
--..+.++.+-+++-.. +|...-.||++++.. .-+ =.||...|+-.+..-+ .+.- +.|.+- |
T Consensus 174 ~~~~~~PiF~splcv~~------sv~i~~VdG~l~~f~-~sG-~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~ 245 (354)
T KOG4649|consen 174 AATRFGPIFASPLCVGS------SVIITTVDGVLTSFD-ESG-RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP 245 (354)
T ss_pred hhhcCCccccCceeccc------eEEEEEeccEEEEEc-CCC-cEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence 65666655444444432 333333688666544 555 4589988877765443 1222 334431 1
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC--CCeEEE-EeCCCeEEEE---------ECCCCcEEEEcccCCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NEKLLV-KQENENLQIL---------DVRNAELMEVSRTEFM 304 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~--~~~lla-~s~D~tIkIW---------Dv~tg~~l~~l~gh~~ 304 (464)
-.-.-=-+|..++|..+...- .+.-..+|.+.. ++++|. ++.||.+.|. +-..||+-+.-. +
T Consensus 246 ~p~~ghL~w~~~~g~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~---~ 319 (354)
T KOG4649|consen 246 LPIAGHLLWATQSGTTLHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEA---I 319 (354)
T ss_pred ccccceEEEEecCCcEEEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEE---e
Confidence 111123478888886665432 111222332222 256666 6799999888 444444432211 1
Q ss_pred ceEEEEEc-C---CCcEEEEEeCCeEEEEeCC
Q 012410 305 TPSAFIFL-Y---ENQLFLTFRNRTVAVWNFR 332 (464)
Q Consensus 305 ~v~sv~Fs-p---dgqllaS~sD~TIklWd~~ 332 (464)
...+=+|| | ||++|+.+.|.-|+-||+.
T Consensus 320 el~~eIFsSPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 320 ELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred ecCcccccCCeEEccEEEEEEccCeEEEEecc
Confidence 11112344 3 7998887779999999984
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.13 Score=59.68 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=65.1
Q ss_pred CeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 274 EKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
.-+++++..|.+-+-|+.+.-+ +..-..-+.+|.+++|+.||.+++.|- +|-|++||. +++.++.+..|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 4566666667777766433222 011111236899999999999999988 999999999 69999999999887543
Q ss_pred eeEEEECCCCCEEEEEe
Q 012410 351 TNNIYITSDQDLIISYC 367 (464)
Q Consensus 351 v~svafSpDg~~LaSgs 367 (464)
|--+-.+.++..+.++.
T Consensus 178 vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEEEeCCCcEEEEcc
Confidence 44555566777777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.07 Score=60.67 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCeEEEEeCCCceEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~~Ge~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
-|.|.|+--+||.-+ +..-| +.|++|+|..-.||+|=. -|-+.+|+..+.+--..-..|
T Consensus 40 ~GSVtIfadtGEPqr~Vt~P~h--------atSLCWHpe~~vLa~gwe-----------~g~~~v~~~~~~e~htv~~th 100 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTYPVH--------ATSLCWHPEEFVLAQGWE-----------MGVSDVQKTNTTETHTVVETH 100 (1416)
T ss_pred CceEEEEecCCCCCccccccee--------hhhhccChHHHHHhhccc-----------cceeEEEecCCceeeeeccCC
Confidence 468888876888544 22233 568999999999999865 788999997666554444556
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. +|.-|.|||||..|.|+..=|.|++|.
T Consensus 101 ~a----------------------------------~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 101 PA----------------------------------PIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred CC----------------------------------CceeEEecCCCCeEEEcCCCceeEEEE
Confidence 54 888999999999999999999999996
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.93 Score=52.20 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=84.2
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCc-eEEEEEcC--------CCcEEEEEeCCeEEEEeCC--CceEEEeccCCCCcCC
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPD 348 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~-v~sv~Fsp--------dgqllaS~sD~TIklWd~~--Ge~l~tl~gH~~~~~~ 348 (464)
.....|.--|+.+|+.++....|.+. |.. |-| ..+.|+.-++..+--||.+ |..+..-+.|+- ...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccC
Confidence 46688888999999999998888765 444 444 3467777778889999973 643333233332 222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
-+..++|-+.+|.+. -||. +|-|||+|- .|+- -..|.|-..
T Consensus 578 ~~Fs~~aTt~~G~ia-vgs~-----------~G~IRLyd~-~g~~AKT~lp~lG~------------------------- 619 (794)
T PF08553_consen 578 NNFSCFATTEDGYIA-VGSN-----------KGDIRLYDR-LGKRAKTALPGLGD------------------------- 619 (794)
T ss_pred CCceEEEecCCceEE-EEeC-----------CCcEEeecc-cchhhhhcCCCCCC-------------------------
Confidence 335678888888754 4665 999999994 4432 222223222
Q ss_pred cccccccccCEEEEEEcCCCCEEEEee
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+|..|..+.||++|+...
T Consensus 620 ---------pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 620 ---------PIIGIDVTADGKWILATC 637 (794)
T ss_pred ---------CeeEEEecCCCcEEEEee
Confidence 899999999999877554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.23 Score=54.96 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=55.7
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-EEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.++.+.++|- -+.||..-++|.|-|.-+. -+-+-++..|...+. +++|-|||++||.|= ||||+|-|+ .|..+..
T Consensus 22 ~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4466667663 3455556688877776654 555555554554555 999999999999998 999999999 6888876
Q ss_pred e
Q 012410 339 F 339 (464)
Q Consensus 339 l 339 (464)
+
T Consensus 100 ~ 100 (665)
T KOG4640|consen 100 F 100 (665)
T ss_pred c
Confidence 4
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.4 Score=42.56 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
..+.|.-||..+|+.... ....+......+..+|+++++ +.-+.++++ +|..++.+..-..-.+...-|.+.+.||
T Consensus 45 ~~~~i~r~~~~~g~~~~~-~~p~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 45 LGGRIHRLDPETGKKRVF-PSPGGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCCeEEEecCCcCceEEE-ECCCCcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 567777888777754332 222222334446666666544 345678887 4665333322111111122578999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 439 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 439 (464)
|.+-+.-......+...+-.-|+|.--|. .|+-++.+.+|=. .=.
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~----------------------------------~~N 166 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT----------------------------------IPN 166 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE----------------------------------ecC
Confidence 99888643200000000111233333332 4555555544321 234
Q ss_pred EEEEcCCCCEEEEeeCC-CcEEec
Q 012410 440 SLFYDEERNEIYTGNRH-GLVHVW 462 (464)
Q Consensus 440 slafspDg~~LaSgs~D-gtVrlW 462 (464)
+|+|||||++||-+-.. +.|+-+
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEE
Confidence 69999999998877553 555544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.58 E-value=5.5 Score=40.98 Aligned_cols=100 Identities=18% Similarity=0.297 Sum_probs=62.6
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEEc----ccCCCceEEEEEcCC----CcEEEEEe-C-------
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVS----RTEFMTPSAFIFLYE----NQLFLTFR-N------- 323 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l----~gh~~~v~sv~Fspd----gqllaS~s-D------- 323 (464)
-++++|.|+ +.++++...|.|++.+ ..|.. +..+ .........++|.|+ +.+.++.+ .
T Consensus 4 P~~~a~~pd--G~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD--GRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT--SCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC--CcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 378999995 7888888899999999 66664 2222 233456789999995 78887776 3
Q ss_pred -CeEEEEeCC-C--c------eEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 -RTVAVWNFR-G--E------LVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 -~TIklWd~~-G--e------~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..|.-|..+ + . ++..+..+ ...|. ...++|.|||.+.++-+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~---g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHN---GGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS----EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCC---CccccCCCCCcEEEEeCC
Confidence 244444442 3 1 23333331 12232 568999999999988875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.25 Score=55.20 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC----CceEEEeccCCCCc
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELVTSFEDHLLWH 346 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~----Ge~l~tl~gH~~~~ 346 (464)
.+.|+.|+.-|.+.|++-.+|+.+..-. +-...+.+...|++..++|.|+ .+-|-+.-+. +++...=..|..
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~-- 122 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS-- 122 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc--
Confidence 4677779999999999966676655433 2223455566788888888888 7777666552 222221112211
Q ss_pred CCCCeeEEEECCCCCEEEEEe
Q 012410 347 PDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs 367 (464)
..|.|..++||+||..+.||-
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD 143 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGD 143 (726)
T ss_pred CCceEEEEEecccccEEeecC
Confidence 112366666666666666663
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=18 Score=41.21 Aligned_cols=188 Identities=8% Similarity=0.032 Sum_probs=99.3
Q ss_pred EEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEE-EecCCCEeEEEEeCCC--------------ceeEEEEEcCC
Q 012410 190 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKIRSSS--------------HVPLKILSIED 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s~--------------d~tIklWdi~t 249 (464)
.+.+| |||+.||.+.. ..++++=|+.+|..+- .+.... ..++|++++ ...|..+++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 67886 89999997633 4478888999887542 222111 346665421 13577788888
Q ss_pred C--cEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 250 G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 250 G--~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
+ +-...++......+-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ...+.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333344422122231222333556666643 5678899994 34553333333333333333 44456655554
Q ss_pred -C-CeEEEEe--CC--CceEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEE
Q 012410 323 -N-RTVAVWN--FR--GELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCL 394 (464)
Q Consensus 323 -D-~TIklWd--~~--Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl 394 (464)
+ ..-+|.. +. ++ .+++-.| ..+ .+..+.++ .+.+++++.. ++.-+|+-+. .++.+
T Consensus 288 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~----~i~~~~~~-~~~l~~~~~~-----------~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQ-WEELIPPRENI----MLEGFTLF-TDWLVVEERQ-----------RGLTSLRQINRKTREV 350 (686)
T ss_pred CCCCCceEEEecCCCccc-CeEEECCCCCC----EEEEEEEE-CCEEEEEEEe-----------CCEEEEEEEcCCCCce
Confidence 2 2445554 32 22 2344444 333 27778887 3466666664 5555555332 24445
Q ss_pred EEE
Q 012410 395 AKI 397 (464)
Q Consensus 395 ~tl 397 (464)
..|
T Consensus 351 ~~l 353 (686)
T PRK10115 351 IGI 353 (686)
T ss_pred EEe
Confidence 554
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.3 Score=44.96 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=47.0
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCC-------CEEE
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLII 364 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg-------~~La 364 (464)
++++......+|+++|.|||++|++-. .+.|++++-. +. .+..+.+-..-....-...|+|+||= .+-+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 344555567899999999999999998 6999999863 32 33333211000001126789999984 3556
Q ss_pred EEec
Q 012410 365 SYCK 368 (464)
Q Consensus 365 Sgs~ 368 (464)
+++.
T Consensus 102 syt~ 105 (454)
T TIGR03606 102 SYTY 105 (454)
T ss_pred EEec
Confidence 6654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.27 E-value=10 Score=39.04 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
..+.++.-++||+++|.++ -.-.+-||--..--+...--... .|.++.|+||+.+.+.+ . .|-
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~----riq~~gf~~~~~lw~~~-~-----------Gg~ 208 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR----RIQSMGFSPDGNLWMLA-R-----------GGQ 208 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-----EEEEEE-TTS-EEEEE-T-----------TTE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc----eehhceecCCCCEEEEe-C-----------CcE
Confidence 5678888999999999998 55557888422222222211222 28999999999987765 3 788
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|+.-+ ...-..+++.+.. | ...+.. .+..|+|.|+++..|+|+....+
T Consensus 209 ~~~s~--~~~~~~~w~~~~~-~-----~~~~~~---------------------~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 209 IQFSD--DPDDGETWSEPII-P-----IKTNGY---------------------GILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEEEE---TTEEEEE---B--T-----TSS--S----------------------EEEEEESSSS-EEEEESTT-EE
T ss_pred EEEcc--CCCCccccccccC-C-----cccCce---------------------eeEEEEecCCCCEEEEeCCccEE
Confidence 88877 1222334433221 0 000111 58899999999888877765433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.02 E-value=6.9 Score=38.77 Aligned_cols=100 Identities=7% Similarity=-0.049 Sum_probs=57.4
Q ss_pred ceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe-C-CCc
Q 012410 262 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN-F-RGE 334 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd-~-~Ge 334 (464)
.+.+++.+++ +..+++-. ....+.++. .+. ....+.+. .+..-.|+++|.+.+... +...+++. . +|+
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEc--CCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 3466666663 44444422 333444443 333 33333444 455667999999888877 77778884 2 454
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
....--+.... .. .|.++.+||||..+|--..
T Consensus 100 ~~~~~v~~~~~-~~-~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 100 GEPVEVDWPGL-RG-RITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ceeEEeccccc-CC-ceEEEEECCCCcEEEEEEe
Confidence 32211111100 00 1889999999999998764
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.82 Score=52.33 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=80.5
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+++.+..+|-|+ ||.|-+.|-+=++++.|..|...+ |..++...+..+|+|-..++ + ++-.+|||||+.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~si----v~~L~~~~~~~~L~sv~Ed~---~---~np~llkiw~le 100 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSI----VQFLYILNKQNFLFSVGEDE---Q---GNPVLLKIWDLE 100 (933)
T ss_pred EcCCCceEEEeeccccEEEecccceeeehheecchhh----hhHhhcccCceEEEEEeecC---C---CCceEEEEeccc
Confidence 788888888888 998877776666778888877652 56677777778999988621 0 112289999985
Q ss_pred C------CeEEEEE--ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 390 T------GKCLAKI--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 390 t------G~cl~tl--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
. -+|+.++ .+|.+ | .+. ..+.+|+.|.|-+++|.|=.||+|-+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~n-p--~~~--------------------------~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKN-P--TNP--------------------------SPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred ccCCCCCcceeeeeeeeccCC-C--CCC--------------------------CcceEEEEEccccEEEEEecCcEEEE
Confidence 3 3677433 33333 1 111 17889999999999999999999876
Q ss_pred c
Q 012410 462 W 462 (464)
Q Consensus 462 W 462 (464)
.
T Consensus 152 ~ 152 (933)
T KOG2114|consen 152 Y 152 (933)
T ss_pred E
Confidence 4
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.9 Score=42.07 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=96.0
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc----------eeEEEEEcCCCcEEEEEee
Q 012410 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH----------VPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 191 VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d----------~tIklWdi~tG~~l~tl~~ 258 (464)
-+|..+||++=+ .-+. .|+++..+. ...-..|+|+|..- .-..++|..+++.+.++..
T Consensus 40 saf~~~dgs~g~a~~~e----------aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 40 SAFDARDGSFGAATLSE----------AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred eeeeccCCceeEEEEcc----------CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 467678887643 2333 456664322 23334455555311 2356788888888877641
Q ss_pred C------CcceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEeCCeE
Q 012410 259 L------LHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTV 326 (464)
Q Consensus 259 ~------~~~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TI 326 (464)
. .|. .|++ ++..|.+.-.| |.|=|||.+.+ +.+-.+.+|...+-.+.+.+||++++-+. |-|
T Consensus 110 ~~~RHfyGHG----vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGI 183 (366)
T COG3490 110 QEGRHFYGHG----VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGI 183 (366)
T ss_pred ccCceeeccc----ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-Cce
Confidence 1 233 3667 45555554332 78899998854 24456788988999999999999998765 333
Q ss_pred E--------------------EEeC-CCceEE--Eec--cCCCCcCCCCeeEEEECCCCCEEEE
Q 012410 327 A--------------------VWNF-RGELVT--SFE--DHLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 327 k--------------------lWd~-~Ge~l~--tl~--gH~~~~~~~~v~svafSpDg~~LaS 365 (464)
+ +-|. +|+++. +|. .|.+. |.-+++-+||..++-
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS-----iRHld~g~dgtvwfg 242 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS-----IRHLDIGRDGTVWFG 242 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc-----eeeeeeCCCCcEEEE
Confidence 3 4453 666643 444 33333 888999999987764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.76 E-value=3.7 Score=40.66 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+.+.+.||||+.+|.-. ++.-.||-. .|+....+++... ..-.|+++|.+.+.... +
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l-------~~PS~d~~g~~W~v~~~-----------~ 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSL-------TRPSWDPDGWVWTVDDG-----------S 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCcc-------ccccccCCCCEEEEEcC-----------C
Confidence 678899999999887755 555555554 4555555566643 35678999888876543 5
Q ss_pred CeEEEEe-CCCCeEEE-EEccCCCCCCcccccCCCCCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEee
Q 012410 381 GSINVSS-ILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGN 454 (464)
Q Consensus 381 gtIklWd-i~tG~cl~-tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs 454 (464)
...+++. ..+|+-.. .+.. ..+. .|.+|.+||||..+|--.
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~---------------------------------~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 87 GGVRVVRDSASGTGEPVEVDW---------------------------------PGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred CceEEEEecCCCcceeEEecc---------------------------------cccCCceEEEEECCCCcEEEEEE
Confidence 5566663 33333211 1100 0111 799999999999988555
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.65 E-value=10 Score=41.23 Aligned_cols=102 Identities=7% Similarity=0.160 Sum_probs=61.9
Q ss_pred cceeeEEEEccCCCeEEEEeC-CCeEEEEECCCCcE--EEEc----cc-CCCceEEEEEcCCC-------cEEEEEe--C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAEL--MEVS----RT-EFMTPSAFIFLYEN-------QLFLTFR--N 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~-D~tIkIWDv~tg~~--l~~l----~g-h~~~v~sv~Fspdg-------qllaS~s--D 323 (464)
..-+.++|.|+ +.++++.. .+.|++++-.++.. +..+ .. ....+..++|+||- .+.++-+ +
T Consensus 30 ~~Pw~maflPD--G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPD--NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCC--CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 44599999995 68989886 59999998666542 2111 11 24668899999885 4566642 1
Q ss_pred ------CeEEE--EeCC-C--------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 ------RTVAV--WNFR-G--------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ------~TIkl--Wd~~-G--------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..-+| |.++ + +++..+... ..|. -..|+|.|||++.++-++
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H~---GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDHN---GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCcC---CceEEECCCCcEEEEECC
Confidence 12344 3332 1 122222211 1222 236999999999998765
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=11 Score=40.31 Aligned_cols=139 Identities=11% Similarity=0.092 Sum_probs=79.9
Q ss_pred CeEEE-EeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceE--EEeccCCCCcC
Q 012410 274 EKLLV-KQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELV--TSFEDHLLWHP 347 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l--~tl~gH~~~~~ 347 (464)
+.+++ +....-++-|| .|+. ...-......+.++.|.+||.+++.+.++.+ +|.. .|+.- .+|..-.....
T Consensus 250 G~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 250 GDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 44444 44444445565 3332 2222333456889999999999998888876 4544 56421 12321111000
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.-.+.+++|.+|+..+++|. .|.|.... .-|+--...+.-+.
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~------------~G~v~~s~-D~G~tW~~~~~~~~------------------------- 368 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGG------------SGILLRST-DGGKSWKRDKGADN------------------------- 368 (398)
T ss_pred CcceEEEEEcCCCcEEEEEC------------CCcEEEeC-CCCcceeEccccCC-------------------------
Confidence 01267899999999999884 68777664 45554443321111
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
.-...++|.|.++++-.++| .+|.|-
T Consensus 369 ------~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 369 ------IAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ------CCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 11267789998887766665 456553
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.39 E-value=14 Score=37.50 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=93.2
Q ss_pred CeEEEEec---CCCEeEEEE-eC-------C--CceeEEEEEcCCCcEEEEEeeCCcce--eeEEEEccCCCeEEE-EeC
Q 012410 218 YTMLYSIS---DKHVQEIKI-RS-------S--SHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQE 281 (464)
Q Consensus 218 g~~l~tl~---~~~V~~Vaf-s~-------s--~d~tIklWdi~tG~~l~tl~~~~~~~--~~V~F~~~~~~~lla-~s~ 281 (464)
++.+.+.+ ..-.|.+.| .. . ....|+.+|++||+.++...-. .+. -.++.. +++|.- .=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 34455555 234677777 32 1 4468999999999998765521 121 333332 244444 447
Q ss_pred CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 282 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+++.-+||..+-+.+.++.-. ..-|.++ .||+.|..+. ..++..+|. +-+.+.+++-...-.+--.+|-+-+- |
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 788999999999999876533 3557776 4455444444 778889997 56666655533221111126666664 7
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|.+.|=-=. ...|-.-|..||+++..+.-
T Consensus 185 G~IyANVW~-----------td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 185 GKIYANVWQ-----------TDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TEEEEEETT-----------SSEEEEEETTT-BEEEEEE-
T ss_pred CEEEEEeCC-----------CCeEEEEeCCCCeEEEEEEh
Confidence 777765443 33455558889998887743
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.38 Score=47.50 Aligned_cols=104 Identities=8% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCeEEEEECCC-CcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCC
Q 012410 273 NEKLLVKQENENLQILDVRN-AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 348 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~t-g~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~ 348 (464)
+.++++|..|+.|.+|+... |+... ...+..+...-|.-..++.+..++. |+.|+.|++. ++-+-.--.|..- +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 36888899999999998541 22111 1112222223333345666777777 9999999984 6665555555421 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.....+.-+..|++. .-|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a---------~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIA---------DTSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEee---------ccccchhhhhcchh
Confidence 2333334444555554 11236777777763
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.30 E-value=20 Score=41.44 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=90.2
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcce-e------------eEEEEcc-CCCeEEEEeC----------CCeEEEEECCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRN-K------------KVDFIEQ-FNEKLLVKQE----------NENLQILDVRN 292 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~-~------------~V~F~~~-~~~~lla~s~----------D~tIkIWDv~t 292 (464)
+.|..|--.|.+||+.+..|... +.+ + .+.-.|. .++.+++++. ++.|+-+|+.|
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 46777788899999999877521 111 0 0111110 1467777642 58899999999
Q ss_pred CcEEEEccc------------C-----CCceE-EEEEcCCCcEEEEE------------------e-CCeEEEEeC-CCc
Q 012410 293 AELMEVSRT------------E-----FMTPS-AFIFLYENQLFLTF------------------R-NRTVAVWNF-RGE 334 (464)
Q Consensus 293 g~~l~~l~g------------h-----~~~v~-sv~FspdgqllaS~------------------s-D~TIklWd~-~Ge 334 (464)
|+++=.+.. + ...+| ..++.|+..++.-. . .++|---|. +||
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 998754321 0 01121 22344443332221 1 235556677 688
Q ss_pred eEEEec--cCCCCcCCCCeeEEE--ECC-CCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 335 LVTSFE--DHLLWHPDCNTNNIY--ITS-DQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 335 ~l~tl~--gH~~~~~~~~v~sva--fSp-Dg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+-.++ .|..|..|..-..+- +.- ||+ .++.+++ +|.+.+.|-.||+.|...+.
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCEEeecee
Confidence 876665 477776654222222 222 774 7888887 99999999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=6.3 Score=40.65 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEE-EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIk-lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..+.++.+.|++.+++.+..|.+. .+|-.|+-.+........ .++++++.|++.+++.|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~----~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSR----RLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcc----cceeeeEcCCCCEEEEec
Confidence 457888999999998888877653 344345544444333222 278999999999888764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=92.05 E-value=6.5 Score=39.28 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=70.5
Q ss_pred EcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCCceEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 298 VSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 298 ~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~Ge~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
.+.+-...++.++|.||.. ++|... .+.|--.+.+|+.+++.. |... ...|++.-+|.++++- +
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D------~EgI~y~g~~~~vl~~-E----- 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGD------YEGITYLGNGRYVLSE-E----- 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SS------EEEEEE-STTEEEEEE-T-----
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCC------ceeEEEECCCEEEEEE-c-----
Confidence 4455555699999999866 454455 777766677899998654 4322 6799999999888864 2
Q ss_pred ccccCCCCeEEEEeCCCC-e--EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 374 QWMEGSAGSINVSSILTG-K--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG-~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
+++++.+.++... + -.+..+.++- .....+|. .+-.|+|+|.++.|
T Consensus 84 -----r~~~L~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~N~---------------------G~EGla~D~~~~~L 132 (248)
T PF06977_consen 84 -----RDQRLYIFTIDDDTTSLDRADVQKISL-----GFPNKGNK---------------------GFEGLAYDPKTNRL 132 (248)
T ss_dssp -----TTTEEEEEEE----TT--EEEEEEEE--------S---SS-----------------------EEEEEETTTTEE
T ss_pred -----CCCcEEEEEEeccccccchhhceEEec-----ccccCCCc---------------------ceEEEEEcCCCCEE
Confidence 3788988887321 1 1122111110 00011222 67889999999999
Q ss_pred EEeeCCCcEEec
Q 012410 451 YTGNRHGLVHVW 462 (464)
Q Consensus 451 aSgs~DgtVrlW 462 (464)
+.+-+..-.+|+
T Consensus 133 ~v~kE~~P~~l~ 144 (248)
T PF06977_consen 133 FVAKERKPKRLY 144 (248)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEeCCCChhhE
Confidence 988777666654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=11 Score=40.30 Aligned_cols=99 Identities=6% Similarity=-0.069 Sum_probs=60.7
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-----EEEcc-c-CCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAEL-----MEVSR-T-EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELV 336 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-----l~~l~-g-h~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l 336 (464)
..+.|.++ +.++..+.++.+ +|....|+. ..... . -...+.++.|.+|++++++|.+|.|....-.|+--
T Consensus 284 ~~v~~~~d--g~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW 360 (398)
T PLN00033 284 QNMGWRAD--GGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSW 360 (398)
T ss_pred eeeeEcCC--CCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcce
Confidence 45556543 445555555554 333344431 22111 1 12357889999999999999999887776567765
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+....- ..++ .+.++|+|.++++..|+|.
T Consensus 361 ~~~~~~-~~~~-~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 361 KRDKGA-DNIA-ANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred eEcccc-CCCC-cceeEEEEcCCCceEEEeC
Confidence 544311 1111 1367999999999999884
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=9.7 Score=39.30 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=59.9
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEE-EECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkI-WDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~t 338 (464)
.+..+++.+. +.+++.+..|.+.. +| ..|+ -.....+-...+.++++.|++++++.+..+.+.+=.. .|+-.+.
T Consensus 174 ~~~~i~~~~~--g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 174 VVRNLRRSPD--GKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred eEEEEEECCC--CeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcccc
Confidence 3466777663 55666666666543 33 2233 2222233346788999999999998887888765333 4654333
Q ss_pred eccC---CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 339 FEDH---LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 339 l~gH---~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..-+ ..+ .+.+++|.|++.+++.|.
T Consensus 251 ~~~~~~~~~~----~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 251 PIIPEITNGY----GYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccCCcccccc----ceeeEEEcCCCCEEEEcC
Confidence 2222 112 267899999999888763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.8 Score=48.72 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred cceeeh-----hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 98 RDIVFA-----LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~-----l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
|+++|+ ...-..+++||++ |. |...+......-.++++-|-|..+|++--..+++ .|.+.. +.|-
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~-------~IvffE-rNGL 276 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS-------DIVFFE-RNGL 276 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCC-------cEEEEe-cCCc
Confidence 666666 3333689999866 43 4444455566778999999999999977666665 444433 3443
Q ss_pred CCC----cccceeeccccCceEEEEeCCCCcEEEE---ecCCCcEEEEeCCCCeEE--EEe--cCCCEeEEEEeCCCcee
Q 012410 173 PDS----GFALFESESLKWPGFVEFDDVNGKVLTY---SAQDSIYKVFDLKNYTML--YSI--SDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 173 ~~~----~~~l~~~~~~~~~~~VaFs~pdGk~LaS---gs~D~tiKlWdl~tg~~l--~tl--~~~~V~~Vafs~s~d~t 241 (464)
..+ .+++-+.+ ...++|+ .|+.+||. ......|+||-+.||.-- ..+ ++... +.++|....+
T Consensus 277 ~hg~f~l~~p~de~~----ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~ 349 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKE----VEELAWN-SNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKT 349 (1265)
T ss_pred cccccccCCcccccc----hheeeec-CCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCcee
Confidence 322 33333322 3379997 79999997 666777999999988742 122 23323 6677777788
Q ss_pred EEEEEcCCCcEE
Q 012410 242 LKILSIEDGTVL 253 (464)
Q Consensus 242 IklWdi~tG~~l 253 (464)
+.+|- +.|+.+
T Consensus 350 L~v~~-~sG~~~ 360 (1265)
T KOG1920|consen 350 LHVLR-ESGQRL 360 (1265)
T ss_pred EEEEe-cCCcEE
Confidence 88876 567654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.87 Score=53.29 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=49.5
Q ss_pred EEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 318 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 318 laS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+|-++ -|-|-+-|.+|.+-. | |.+-.....|.+++|+-||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~-~--~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP-L--HQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch-h--hcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 44444 555666666655321 1 222111112899999999999998865 99999999999999999
Q ss_pred EccCCC
Q 012410 397 INATNC 402 (464)
Q Consensus 397 l~gh~~ 402 (464)
|.-|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988775
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.23 E-value=18 Score=36.59 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=106.3
Q ss_pred EEEEeCCCCcEEEEecCCC--cEEEEeCCCCeEEEEec--CC-CEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS--DK-HVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~--tiKlWdl~tg~~l~tl~--~~-~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|. .||.++-|.+.-+ .++.+|++||+.+.... .. -=..|++-.+ ..+..-++|.+|-+.+.+|.
T Consensus 49 GL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 49 GLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 68885 5888888877744 89999999999875433 11 1123333222 35678899999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CC---ceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FM---TPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~---~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
.. ..=|.++. +++.|+.+....+|..+|..+.+.++.+.-. .. .+..+-+ -+|.+.|=-- ...|-.=|.
T Consensus 128 y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 128 YP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEEEEET
T ss_pred cC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEEEEeC
Confidence 54 34488884 5677777767789999999998876644321 11 2333434 2788887776 556666787
Q ss_pred -CCceEEEec-----cC----CCCc-CCCCeeEEEECCCCCEEEEEe
Q 012410 332 -RGELVTSFE-----DH----LLWH-PDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 332 -~Ge~l~tl~-----gH----~~~~-~~~~v~svafSpDg~~LaSgs 367 (464)
+|+++..+. .+ .... .+-..|.||+.|+++.|.--+
T Consensus 203 ~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 203 ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 799887553 10 0000 012378999988766554433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.54 Score=51.30 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.9
Q ss_pred eeEEEECC----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 351 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 351 v~svafSp----Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 56777777 8899999987 999999999999999887544
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=11 Score=38.83 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe-EEEEECCCCcEEEEcccCCCceE--EEEEcCCCcEEEEEe-C
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN-LQILDVRNAELMEVSRTEFMTPS--AFIFLYENQLFLTFR-N 323 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t-IkIWDv~tg~~l~~l~gh~~~v~--sv~FspdgqllaS~s-D 323 (464)
+.|+|+....-. .+-..++|+|-..-.++.+-.=|| ..++|..+++.+.++....+.-. -=.|||||.+|-..- |
T Consensus 56 eaGk~v~~~~lp-aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 56 EAGKIVFATALP-ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred cCCceeeeeecc-cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 358887655411 233455565543333333433333 45889888887776543211100 014999999987654 3
Q ss_pred -----CeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 -----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 -----~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|.|-|+|++ =+.+-.|..|-.- --.+.+.+||.+|+-+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiG-----pHev~lm~DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIG-----PHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcC-----cceeEEecCCcEEEEeC
Confidence 589999985 2345577787764 34688999999999864
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.02 E-value=25 Score=36.08 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCcEEEEEe-C------CeEEEEeCCCceEEEec---cC-------CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 305 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D------~TIklWd~~Ge~l~tl~---gH-------~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
-+.++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..+-...+++++|||+.|...-
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 355888999999999998 8 78877787899877662 21 3334444578999999999777766
Q ss_pred c
Q 012410 368 K 368 (464)
Q Consensus 368 ~ 368 (464)
+
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 5
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=27 Score=36.17 Aligned_cols=198 Identities=17% Similarity=0.218 Sum_probs=117.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+.+ +-++.|||+-++|.++- +. ...-+|--.+|++..+.+|-. +.-|..+++. -+|++.++---|
T Consensus 85 ~~n-vS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~dER~ 149 (316)
T COG3204 85 TAN-VSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVDERD 149 (316)
T ss_pred ccc-ccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEehhc
Confidence 445 99999999999999843 33 345566668999987766544 3556689997 688888887778
Q ss_pred CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 208 SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
+++-+..+.....+..+.. .+ |.| |. ..+....-..+|+.|+ ++.+.+.-|-..++|
T Consensus 150 ~~l~~~~vd~~t~~~~~~~-----~~--------i~L-----~~----~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I 206 (316)
T COG3204 150 RALYLFTVDADTTVISAKV-----QK--------IPL-----GT----TNKKNKGFEGLAWDPV-DHRLFVAKERNPIGI 206 (316)
T ss_pred ceEEEEEEcCCccEEeccc-----eE--------Eec-----cc----cCCCCcCceeeecCCC-CceEEEEEccCCcEE
Confidence 8777776654333222110 01 111 11 1110122256788885 566777777778888
Q ss_pred EECCCCc-E--EEEcccCCC-------ceEEEEEcCCCcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCC----CCe
Q 012410 288 LDVRNAE-L--MEVSRTEFM-------TPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPD----CNT 351 (464)
Q Consensus 288 WDv~tg~-~--l~~l~gh~~-------~v~sv~FspdgqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~----~~v 351 (464)
+.+..+. . ++...+++. -|+++.|.+....|+.=| ++.+---|.+|+.+..+.-+..++.- -.-
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqa 286 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQA 286 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCc
Confidence 7766544 2 233333332 366777886555444444 77777777789876655543333210 012
Q ss_pred eEEEECCCCCEE
Q 012410 352 NNIYITSDQDLI 363 (464)
Q Consensus 352 ~svafSpDg~~L 363 (464)
..|+.-++|.+-
T Consensus 287 EGiamDd~g~lY 298 (316)
T COG3204 287 EGIAMDDDGNLY 298 (316)
T ss_pred ceeEECCCCCEE
Confidence 356666655543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=89.66 E-value=31 Score=36.79 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=97.3
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C--------CCEeEEEEeC-----CCceeEEEEE-cCC
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KHVQEIKIRS-----SSHVPLKILS-IED 249 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~--------~~V~~Vafs~-----s~d~tIklWd-i~t 249 (464)
+-+.+++.|+ =| ++|-|.+|+++.|-|+.....++.-. + ..|..+.|+. +....+.+|- ...
T Consensus 87 g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 4455788973 45 89999999999999999988888633 2 3577888863 3445688886 556
Q ss_pred CcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCe--EEEEECCCCcE-EEEc---cc--CCCceEEEEEcCCCcEEE
Q 012410 250 GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENEN--LQILDVRNAEL-MEVS---RT--EFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 250 G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~t--IkIWDv~tg~~-l~~l---~g--h~~~v~sv~Fspdgqlla 319 (464)
|+++. |+- ....-+.|.|... . ....+.. |...|..+|+. ..+. ++ ....+ ..+++
T Consensus 165 G~v~~-fkIlp~~~g~f~v~~~~~----~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i--------~g~vV 230 (395)
T PF08596_consen 165 GNVLT-FKILPSSNGRFSVQFAGA----T-TNHDSPILSIIPINADTGESALATISAMQGLSKGISI--------PGYVV 230 (395)
T ss_dssp SEEEE-EEEEE-GGG-EEEEEEEE----E---SS----EEEEEETTT--B-B-BHHHHHGGGGT------------EEEE
T ss_pred CCEEE-EEEecCCCCceEEEEeec----c-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc--------CcEEE
Confidence 76553 321 0112255555331 1 1112222 23345566652 2221 11 00111 12455
Q ss_pred EEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE-----CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 320 TFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI-----TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 320 S~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf-----SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
..++..|||... ++++.+.......- ...+.+ ...+..|++-.. +|.|++..+..=+-
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~-----~~~~~vv~~~~~~~~~~Lv~l~~-----------~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFL-----CSSASVVPTISRNGGYCLVCLFN-----------NGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EE-----EEEEEEEEEE-EEEEEEEEEEET-----------TSEEEEEETTT--E
T ss_pred EEcccceEEEeCCCCcccceeeccccc-----cceEEEEeecccCCceEEEEEEC-----------CCcEEEEECCCchH
Confidence 666888999998 67776533322111 344555 346778888775 99999999988777
Q ss_pred EEEEccC
Q 012410 394 LAKINAT 400 (464)
Q Consensus 394 l~tl~gh 400 (464)
+..++-.
T Consensus 295 i~~~~l~ 301 (395)
T PF08596_consen 295 IKSVSLP 301 (395)
T ss_dssp EEEEE-S
T ss_pred hhcccCC
Confidence 7766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.51 E-value=8.2 Score=38.22 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=93.9
Q ss_pred EEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec-C-------------CCEeEEEEeCCCceeEEEEEcCCCcEE
Q 012410 190 FVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D-------------KHVQEIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~-~-------------~~V~~Vafs~s~d~tIklWdi~tG~~l 253 (464)
.++.. ||.+|.|.+. -+-|++|||.+|+.+.+-+ + +.|+.+.+ .++---..|..|=+|+
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~l 124 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEEL 124 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhh
Confidence 45563 7788887766 4579999999999876432 1 12333222 2334445677777777
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCceEEEEE--cCCCcEEEEEe-CCeE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMTPSAFIF--LYENQLFLTFR-NRTV 326 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~v~sv~F--spdgqllaS~s-D~TI 326 (464)
..+... +.=|.++. ++..|+.+...-+++.-|.++-..+.+ ..|- +|.-+-= -=||.+.|--- +..|
T Consensus 125 g~~~y~-GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~--pv~~LNELE~VdG~lyANVw~t~~I 198 (262)
T COG3823 125 GRFSYE-GEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV--PVSKLNELEWVDGELYANVWQTTRI 198 (262)
T ss_pred cccccC-Ccceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCe--ecccccceeeeccEEEEeeeeecce
Confidence 777643 33366653 445666666667888777777554332 2221 1111100 02666676665 5556
Q ss_pred EEEeC-CCceEEEec------------cCCCCcCCCCeeEEEECCCC-CEEEEE
Q 012410 327 AVWNF-RGELVTSFE------------DHLLWHPDCNTNNIYITSDQ-DLIISY 366 (464)
Q Consensus 327 klWd~-~Ge~l~tl~------------gH~~~~~~~~v~svafSpDg-~~LaSg 366 (464)
..-|. +|+.+...+ .|.+- .|.||+-|++ +++++|
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv-----lNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV-----LNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCcccccccc-----ccceeecCcCCeEEEec
Confidence 56666 588776544 23222 6889999998 455554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=89.30 E-value=33 Score=36.54 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=109.4
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec----------------CCCEeEEEEe--CC---CceeEEEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS----------------DKHVQEIKIR--SS---SHVPLKILS 246 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~----------------~~~V~~Vafs--~s---~d~tIklWd 246 (464)
..|.|. ++-.-||-|-..|.|=||.....+.-. ... ...+.+|.=. |+ +-.|+-+.+
T Consensus 5 ~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 5 THVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 368887 565567778888999888754322110 000 0111111110 11 123444444
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE--ccc------CCCceEEEEEc---C--
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT------EFMTPSAFIFL---Y-- 313 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--l~g------h~~~v~sv~Fs---p-- 313 (464)
... ..+..++.+.- |.+++|.+||++-|.|++.-..+.. +.. ....|.++-|+ +
T Consensus 84 ~~~-----------g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 84 AKQ-----------GPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp --S------------SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccC-----------CcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 443 45566666543 8999999999999999988776643 333 23457777776 2
Q ss_pred CC---cEEEEEe-CCeEEEEeC--C--CceEEEeccCCCCcCCCCeeEEEECCCC---------------------CEEE
Q 012410 314 EN---QLFLTFR-NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQ---------------------DLII 364 (464)
Q Consensus 314 dg---qllaS~s-D~TIklWd~--~--Ge~l~tl~gH~~~~~~~~v~svafSpDg---------------------~~La 364 (464)
|+ -+++.|. .|++.++.+ . |.....+.+...-..+..+.-..|..+. .+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 33 4566776 888888875 2 5444444444311111112233353331 1233
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY- 443 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf- 443 (464)
..+ +..||+....++++.++.....- ...++.|
T Consensus 231 vvS------------e~~irv~~~~~~k~~~K~~~~~~----------------------------------~~~~~~vv 264 (395)
T PF08596_consen 231 VVS------------ESDIRVFKPPKSKGAHKSFDDPF----------------------------------LCSSASVV 264 (395)
T ss_dssp EE-------------SSEEEEE-TT---EEEEE-SS-E----------------------------------EEEEEEEE
T ss_pred EEc------------ccceEEEeCCCCcccceeecccc----------------------------------ccceEEEE
Confidence 322 67899999999998776652211 2233344
Q ss_pred ----cCCCCEEEEeeCCCcEEecc
Q 012410 444 ----DEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 444 ----spDg~~LaSgs~DgtVrlWd 463 (464)
...+..|++=..||.|++..
T Consensus 265 ~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 265 PTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp EEE-EEEEEEEEEEETTSEEEEEE
T ss_pred eecccCCceEEEEEECCCcEEEEE
Confidence 34677888888999998864
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.95 Score=33.83 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 336 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l 336 (464)
..|..+.|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 4588899999999999999 99999999887754
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.05 E-value=3.2 Score=40.47 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-------cc-------cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-------l~-------gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
+.|....+..+++=..+|.+.+||+.+++++.. +. .....|.++.++.+|.-+++.+|+..=.||.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 334443567788888999999999999997642 22 3446788888899999999999888889997
Q ss_pred CCceEEEecc
Q 012410 332 RGELVTSFED 341 (464)
Q Consensus 332 ~Ge~l~tl~g 341 (464)
+=+|-..+.+
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 7555444433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.99 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=29.5
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
|..+.|+|..++||-++. ||.|-|+.+ +||.+.
T Consensus 14 v~~~~w~P~mdLiA~~t~-----------~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTE-----------DGEVLVYRL-NWQRIW 46 (47)
T ss_pred EEEEEECCCCCEEEEEEC-----------CCeEEEEEC-CCcCcc
Confidence 889999999999999987 999999998 887653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.3 Score=44.47 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=64.7
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC---------------
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD--------------- 359 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD--------------- 359 (464)
..|....-...+++.+|++++.|... =|-|-|+|+ +|..++.++|-.+-. | -|--...+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c-~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--C-GWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--E-EEEEeecccccccccccccCCCCc
Confidence 34555555677899999999988876 778999999 799999888865521 1 011112221
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 360 -QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 360 -g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
..+|+-+.. .-|.|-||++++|..++.++--
T Consensus 378 ~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 378 FALFLVIYAP----------RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ceEEEEEEec----------cCCeEEEEecCCCCEEEEEEeC
Confidence 236666653 4799999999999999998653
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.2 Score=57.48 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=84.7
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCC--------CeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDC--------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~--------~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|-++.-++-.+- +++|+|-+.+-.+..-|.+|..|+.|- .|- ..||||+.+|.+|. ||
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~--~lSpDGtv~a~a~~-----------dG 257 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLA--SLSPDGTVFAWAIS-----------DG 257 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhhe--eeCCCCcEEEEeec-----------CC
Confidence 345555555555 889999887544446777899885432 111 26999999999987 99
Q ss_pred eEEEEeCC-C----CeEEEEEccCCCCCCcc-------cccCC-CC---CCcccccccccccccccc-ccc-----cCEE
Q 012410 382 SINVSSIL-T----GKCLAKINATNCSPKVD-------DELGS-SS---TGKSKKLNKSSYIRSTVG-EAL-----EDIT 439 (464)
Q Consensus 382 tIklWdi~-t----G~cl~tl~gh~~~~~~~-------~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~l-----~~V~ 439 (464)
.++.|.+. + -+|+...+.|+..|..- +...+ +- .|-+...+.-.+||...+ +-| +.|.
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 99999863 3 45899999998644311 11111 11 233455556677777666 333 3444
Q ss_pred EEEEcCCCC------------EEEEeeCCCcEEeccC
Q 012410 440 SLFYDEERN------------EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 440 slafspDg~------------~LaSgs~DgtVrlWd~ 464 (464)
.|+ =|||. .+++-+-|++|++|.|
T Consensus 338 iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 338 IVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred eec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 444 33332 1234556677777765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=7.2 Score=43.03 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=82.5
Q ss_pred cCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------------CceeEEEEEcC-CCc-EEEEEeeC---Ccce
Q 012410 205 AQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------------SHVPLKILSIE-DGT-VLKVFYHL---LHRN 263 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------------~d~tIklWdi~-tG~-~l~tl~~~---~~~~ 263 (464)
.+++-+|+ |++.|+-+-... ...|.-+.|.|+ ++..|--||.. .|. .|..-+++ ...+
T Consensus 354 ~~~~l~kl-DIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 354 EQDKLYKL-DIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CcCcceee-ecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 44666666 888998887665 333666667652 45556666643 233 23222221 1222
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
++.. -.-.+|.|++||.+|-|||+| +.|.--+ .+.|-...|.-|.-+.||+.|+..++.++-|-+.
T Consensus 433 Fsc~-aTT~sG~IvvgS~~GdIRLYd-ri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCF-ATTESGYIVVGSLKGDIRLYD-RIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccee-eecCCceEEEeecCCcEEeeh-hhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 3322 222468999999999999999 4666444 4667677888899999999999999998888884
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=87.71 E-value=26 Score=35.85 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=35.3
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+|+|.--++|++|+|.=. -.+|-+-|-.||+-+..|.|-
T Consensus 146 iNsV~~~~~G~yLiS~R~-----------~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRN-----------TSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecc-----------cCEEEEEECCCCcEEEEeCCC
Confidence 889999999999999765 788999999999999999876
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=87.13 E-value=31 Score=33.57 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCeEEEEEC-CCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 273 NEKLLVKQENENLQILDV-RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv-~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
++.|++|.++| |.++++ ...+..+...- ..|..+...|+-++|+.=+|+++.+.++
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLsd~~l~~~~L 63 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLSDGQLYVYDL 63 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEcCCccEEEEc
Confidence 57888898888 899998 34444444332 2389999999999999989999999997
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.95 E-value=40 Score=34.73 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=62.2
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCC
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~ 343 (464)
..+..++ ++..+++++...-.+-||--...-....+.-...+.++.|+||+.+.+.+..+.|+.=+. +.-..++..+.
T Consensus 148 ~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~-~~~~~~w~~~~ 225 (302)
T PF14870_consen 148 NDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD-PDDGETWSEPI 225 (302)
T ss_dssp EEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE--TTEEEEE---B
T ss_pred EeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC-CCCcccccccc
Confidence 4444445 344444565666667888443334444444557899999999999988878888887772 22233444433
Q ss_pred CCc--CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 344 LWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 344 ~~~--~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
... ..-.+-++++.|++.+.|+|+ .|++-... ..|+--++
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg------------~G~l~~S~-DgGktW~~ 267 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGG------------SGTLLVST-DGGKTWQK 267 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEES------------TT-EEEES-STTSS-EE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeC------------CccEEEeC-CCCccceE
Confidence 221 112367899999999999886 56665543 34554443
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.43 E-value=3.6 Score=44.93 Aligned_cols=38 Identities=11% Similarity=0.440 Sum_probs=28.2
Q ss_pred ceEEEEEcC----CCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 305 TPSAFIFLY----ENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 305 ~v~sv~Fsp----dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.+.+.+.++ +..++++-+ |+++|+||+ +|+|+.+..-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 455566666 778888988 999999999 79998876443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.51 E-value=39 Score=36.70 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEE--EeccCC-CCcCCCCeeEEEEC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVT--SFEDHL-LWHPDCNTNNIYIT 357 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~--tl~gH~-~~~~~~~v~svafS 357 (464)
....+-+.| .+|+.+-.+......-..+-+.++|.+++..+ ..++..|..|+.+. .|.+.. ..|. .+..-
T Consensus 126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-----D~~~l 198 (477)
T PF05935_consen 126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-----DIDEL 198 (477)
T ss_dssp BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S------EEE-
T ss_pred CCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-----ccEEC
Confidence 556777888 77887665443221111167889999987665 88999999999766 444511 1122 36688
Q ss_pred CCCCEEEEEecCCCcc---ccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 358 SDQDLIISYCKAEPED---QWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~---~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|+|++|+-+......+ ....-+|. |-..| .+|+-+..+..-
T Consensus 199 ~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~ 242 (477)
T PF05935_consen 199 PNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFF 242 (477)
T ss_dssp TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGG
T ss_pred CCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehH
Confidence 9999999887311100 00011244 55667 899998887553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.25 E-value=17 Score=40.23 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=89.2
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC------CeEEEEeCCCeEEEEECCC-Cc-EEEEcccCC----Cc
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN------EKLLVKQENENLQILDVRN-AE-LMEVSRTEF----MT 305 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~------~~lla~s~D~tIkIWDv~t-g~-~l~~l~gh~----~~ 305 (464)
.-..|+=.|||.|+++-+...+ .-+.=|+|.|++. ++.++|=.|..|-=||++- |. .+.+-++|+ .-
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFE-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CcCcceeeecccceeeeEeecc-CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 4456788899999999887743 2255666666532 3455666788888899874 22 455555553 11
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
-.+++-.-+| .+|.|| +|-|||+|-.|..-+ -|.|-... |.-|..|.||++|+.-| +.++
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc------------~tyL 494 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATC------------KTYL 494 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEec------------ccEE
Confidence 2234444555 466777 999999997666544 45555544 77899999999999988 5777
Q ss_pred EEEeC
Q 012410 384 NVSSI 388 (464)
Q Consensus 384 klWdi 388 (464)
-|-++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 77764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=83.68 E-value=94 Score=36.15 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=96.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+| +|-.++.++.+.=-|.+||+.+-...- ..+..- .....-.-+-+|+..++..-.... -..+ ..+++
T Consensus 194 gg-~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~~~cRGvay~~~p~~~~~~~~~------~~p~---~~~~r 262 (764)
T TIGR03074 194 GD-TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQHQTCRGVSYYDAPAAAAGPAAP------AAPA---DCARR 262 (764)
T ss_pred CC-EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-cccccccceEEecCCccccccccc------cccc---ccCCE
Confidence 55 555567778888889999998755431 111000 000000112334332221100000 0000 02467
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCC---------------ceEEEEEcCCCcEEEEEe----------CCeEEEEe
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFM---------------TPSAFIFLYENQLFLTFR----------NRTVAVWN 330 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~---------------~v~sv~FspdgqllaS~s----------D~TIklWd 330 (464)
++.+..|+.+.-.|.+||+.+..+..+.. .+.+--.-.++.+++.++ ++.|+-.|
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 88888899999999999998765432100 011111112566666543 47899999
Q ss_pred C-CCceEEEecc-C---C-------CCc-CCCCee-EEEECCCCCEEEEEe-cCCCcc----c--cccCCCCeEEEEeCC
Q 012410 331 F-RGELVTSFED-H---L-------LWH-PDCNTN-NIYITSDQDLIISYC-KAEPED----Q--WMEGSAGSINVSSIL 389 (464)
Q Consensus 331 ~-~Ge~l~tl~g-H---~-------~~~-~~~~v~-svafSpDg~~LaSgs-~~~~~~----~--~~~s~DgtIklWdi~ 389 (464)
. +|+++-.+.- + . .|. ..-++| ..++.|+-.++.-+. .+.|+- + ...--.++|-=-|+.
T Consensus 343 a~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 343 VNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred CCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 9 7999876641 0 0 010 001121 245555555544422 112210 0 011124677778999
Q ss_pred CCeEEEEEcc
Q 012410 390 TGKCLAKINA 399 (464)
Q Consensus 390 tG~cl~tl~g 399 (464)
|||....++.
T Consensus 423 TGk~~W~~Q~ 432 (764)
T TIGR03074 423 TGKERWVFQT 432 (764)
T ss_pred CCceEEEecc
Confidence 9999988876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.06 E-value=3.8 Score=46.24 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=80.6
Q ss_pred ceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 90 ~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
+..-.-..+++|+.++..|.+.+|++..|+.+..=|.+.+..+-....|++....|. +++. ..|-+..+.
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa----gt~~------g~V~v~ql~ 106 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA----GTAS------GRVSVFQLN 106 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhh----hcCC------ceEEeehhh
Confidence 333333448999999999999999999998887776666666667777777666555 5555 667676665
Q ss_pred cCCCCCcccceeeccccC---ceEEEEeCCCCcEEEEecCCCcEEEEeCCC
Q 012410 170 RGKPDSGFALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (464)
Q Consensus 170 ~G~~~~~~~l~~~~~~~~---~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t 217 (464)
.+++ ..+..++.....| +.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 107 ~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 5443 2233333322223 3379997 8999999999988887766554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=82.75 E-value=13 Score=42.15 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=60.8
Q ss_pred CeEEE-EeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEc--CCCcEEEEEe-CCeEEEEeC-C------Cc---eEE
Q 012410 274 EKLLV-KQENENLQILDVRNAELME--VSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVWNF-R------GE---LVT 337 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~Fs--pdgqllaS~s-D~TIklWd~-~------Ge---~l~ 337 (464)
+++++ .+...++.|||.+.+.+.. .+ .+.+.|..+.|. ||||.+++-+ .+.|.|+-- + +- .++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 44444 4566899999999998543 34 334678877754 9999999999 999999862 1 21 222
Q ss_pred --EeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 338 --SFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 338 --tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
.+.+|+. |+ |.+..+-+||.+++..
T Consensus 120 ~i~i~~~T~-h~---Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 120 KIDISSHTP-HP---IGDSIWLKDGTLVVGS 146 (631)
T ss_pred EEEeecCCC-CC---ccceeEecCCeEEEEe
Confidence 2345553 22 6688899999998765
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=81.53 E-value=26 Score=36.93 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 437 DITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|+.+|..+.||+-+.+|+|++|+.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 5999999999999999999999999983
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.45 E-value=22 Score=35.50 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=50.7
Q ss_pred EEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--C--CeEEEEeC-C--CceE-EEecc---CCCCcCCCCeeEEE
Q 012410 287 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--N--RTVAVWNF-R--GELV-TSFED---HLLWHPDCNTNNIY 355 (464)
Q Consensus 287 IWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D--~TIklWd~-~--Ge~l-~tl~g---H~~~~~~~~v~sva 355 (464)
+||+.+++....-........+=+|.|||++|.+|+ | +.|++.+- . +.|- ....+ ..-|- .++.
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-----pT~~ 124 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-----PTAT 124 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-----ccce
Confidence 899999886543333344566667999999999998 4 36888885 2 2332 11111 11252 3677
Q ss_pred ECCCCCEEEEEec
Q 012410 356 ITSDQDLIISYCK 368 (464)
Q Consensus 356 fSpDg~~LaSgs~ 368 (464)
.=|||+.|+-|+.
T Consensus 125 ~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 125 TLPDGRVLIVGGS 137 (243)
T ss_pred ECCCCCEEEEeCc
Confidence 7899999999875
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.31 E-value=5.9 Score=27.31 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=25.9
Q ss_pred CCCc-EEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE
Q 012410 196 VNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI 234 (464)
Q Consensus 196 pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf 234 (464)
|||+ +.++.-.+++|-++|+++++.+.++. ...-+.++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4566 44455568889999998888887766 333445544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.60 E-value=43 Score=33.89 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=62.9
Q ss_pred EECCCCcEEEEcccCCC--------ceEEEEEcCCCcE-EEEEe-CCeEEEEe--C-CCceE-----EEeccCCC---Cc
Q 012410 288 LDVRNAELMEVSRTEFM--------TPSAFIFLYENQL-FLTFR-NRTVAVWN--F-RGELV-----TSFEDHLL---WH 346 (464)
Q Consensus 288 WDv~tg~~l~~l~gh~~--------~v~sv~Fspdgql-laS~s-D~TIklWd--~-~Ge~l-----~tl~gH~~---~~ 346 (464)
.....|++...+.+|.- -..+++|+-|-+. ...-+ +-+|.-|| . +|.+. -.|+..+. ..
T Consensus 134 le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~ 213 (310)
T KOG4499|consen 134 LEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE 213 (310)
T ss_pred ccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC
Confidence 33345555555555542 2345667655554 44556 88999999 4 47653 34443211 22
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|| ..++--+|.+.+..-. -++|-..|..|||.|.+++=-+.
T Consensus 214 PD----Gm~ID~eG~L~Va~~n-----------g~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 214 PD----GMTIDTEGNLYVATFN-----------GGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred CC----cceEccCCcEEEEEec-----------CcEEEEECCCCCcEEEEEEcCCC
Confidence 32 3556667887766543 78999999999999999977664
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.37 E-value=1e+02 Score=36.75 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=100.3
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEE---EeeC-CCEEEEEEe-ecCCCCcccceeeEEEEEeccCCCCCcccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLF---YNKN-NDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~---fs~~-g~~l~svSa-~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~ 183 (464)
.++++|-.|=+-++...+...|-+-|+- |..| +.++++.-+ +-+|.----.||.+-++.-..+++ . ..++..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~--~v~e~~ 827 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-E--LVAETV 827 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-e--eeeeee
Confidence 4677777777777777777777777766 7766 666665322 223332223345555544442333 1 234444
Q ss_pred cccCceE-EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 184 SLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 184 ~~~~~~~-VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
+.+-|.+ ++| ||++|| +-...|+|+++.+.+.|+.-. +...++-..++.+
T Consensus 828 v~Gav~aL~~f---ngkllA--~In~~vrLye~t~~~eLr~e~-----------~~~~~~~aL~l~v------------- 878 (1096)
T KOG1897|consen 828 VKGAVYALVEF---NGKLLA--GINQSVRLYEWTTERELRIEC-----------NISNPIIALDLQV------------- 878 (1096)
T ss_pred eccceeehhhh---CCeEEE--ecCcEEEEEEccccceehhhh-----------cccCCeEEEEEEe-------------
Confidence 4455554 556 799987 566789999988875554321 1112222222221
Q ss_pred eeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEeCCeEEEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVW 329 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~sD~TIklW 329 (464)
.++.+++|- .-=|+-.++-..|+..++-+. |..|.+++.+..+-.+|.+-.++.+.+-
T Consensus 879 ---------~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 879 ---------KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTV 939 (1096)
T ss_pred ---------cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEE
Confidence 235566654 333444555566667766553 4467778887777666654445555444
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=80.18 E-value=95 Score=33.79 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCC-CceEEEEEcCCCc
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEF-MTPSAFIFLYENQ 316 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~-~~v~sv~Fspdgq 316 (464)
..+-+.|.+ |.+...+.........+.+. .++.+++++. ..++..|+ .|+.+. .+.+.. ..=-.+.+.|+|+
T Consensus 128 ~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l--~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 128 SYTYLIDNN-GDVRWYLPLDSGSDNSFKQL--PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEETT-S-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred ceEEEECCC-ccEEEEEccCccccceeeEc--CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCC
Confidence 445566664 77766665221221223333 3578887665 88888895 577554 333311 0012567889999
Q ss_pred EEEEEe--------------CCeEEEEeCCCceEEE--eccCC-----------------------CCcCCCCeeEEEEC
Q 012410 317 LFLTFR--------------NRTVAVWNFRGELVTS--FEDHL-----------------------LWHPDCNTNNIYIT 357 (464)
Q Consensus 317 llaS~s--------------D~TIklWd~~Ge~l~t--l~gH~-----------------------~~~~~~~v~svafS 357 (464)
+|+.+. .-.|-..|-+|+.+.. +.+|. +|.. +|+|.+-
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H---~Nsi~yd 279 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLH---INSIDYD 279 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-----EEEEEEE
T ss_pred EEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccc---cCccEEe
Confidence 888665 1133444455777664 33443 2433 7999998
Q ss_pred C-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 358 S-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 358 p-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
| |+.+|+|+=. -..|-..|-.||+....|-+|...
T Consensus 280 ~~dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 280 PSDDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTTTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCCCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 8 7788887632 347777888899999999888763
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 69/467 (14%), Positives = 147/467 (31%), Gaps = 174/467 (37%)
Query: 36 KKLQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIV 95
+ R +RDR + N + F K + + P+L R ++E+
Sbjct: 105 PSMMTRMYIEQRDRLY---NDNQVF-------------AKYNVSRLQPYLKLRQALLELR 148
Query: 96 AARDI-VFALAHSG-------VCAAFSRET--NRRICFLNV----SPDEVI--------- 132
A+++ + + SG VC ++ + + +I +LN+ SP+ V+
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 133 --------------------------RSLFYNKN-NDSLITVS-VYAS---DNFSSLKCR 161
R L +K + L+ + V + + F+ L C+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCK 267
Query: 162 ---------------STKIEYIRRGKPDSGFALFESESL--KWPGFVEFD------DVNG 198
+ +I E +SL K+ D N
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 199 KVLTYSA---QDSI-----YKVFDLKNYTMLYSISDKHVQEIKIRS----------SSHV 240
+ L+ A +D + +K + T + S ++ + R S+H+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI------LDVR--N 292
P +LS+ + + ++ + + + ++ LV+++ + I L+++
Sbjct: 388 PTILLSL--------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 293 AELMEVSRT---EFMTPSAF-------------IFLY--------EN--------QLFLT 320
+ R+ + P F + + E+ +FL
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 321 FR------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 361
FR WN G ++ + + + P YI D D
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-------YIC-DND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 101/308 (32%)
Query: 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI-SDKHVQEIKIRSSSHVPLKILSIED 249
E +L+ +D+ FD K+ M SI S + + I +
Sbjct: 13 EHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHI---------IMSKDAVS 62
Query: 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 309
GT L++F+ LL + +++ +++F E++L + N LM +TE PS
Sbjct: 63 GT-LRLFWTLLSKQEEM--VQKFVEEVL--RINYKF---------LMSPIKTEQRQPSMM 108
Query: 310 IFLYENQLFLTFRNRTVAVWN----F------RGELVTSFEDHLLWHPDCNTNNIYITSD 359
+Y Q R+R +N F R + LL +
Sbjct: 109 TRMYIEQ-----RDRL---YNDNQVFAKYNVSRLQPYLKLRQALL----------ELRPA 150
Query: 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNC-SPKVDDE-------- 409
++++I +G GS GK +A C S KV +
Sbjct: 151 KNVLI------------DGVLGS--------GKTWVA---LDVCLSYKVQCKMDFKIFWL 187
Query: 410 -LGSSSTGKS--KKLNKSSYIRSTVGEALEDITS---LFYDEERNEI-----YTGNRHGL 458
L + ++ ++ + L K Y + D +S L + E+ + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 459 V---HVWS 463
+ +V +
Sbjct: 248 LVLLNVQN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.98 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.9 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.82 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.82 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.78 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.77 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.75 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.74 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.69 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.69 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.68 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.68 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.65 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.61 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.61 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.6 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.58 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.51 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.47 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.43 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.42 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.41 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.39 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.37 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.34 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.33 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.33 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.18 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.03 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.9 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.87 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.87 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.87 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.8 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.8 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.79 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.78 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.77 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.75 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.69 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.66 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.62 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.6 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.52 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.51 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.48 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.47 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.46 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.45 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.44 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.42 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.4 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.34 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.33 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.32 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.17 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.17 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.16 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.14 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.14 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.1 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.1 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.99 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.9 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.89 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.86 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.84 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.84 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.55 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.52 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.48 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.39 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.33 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.3 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.29 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.26 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.26 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.24 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.12 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.96 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.94 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.87 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.78 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.75 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.61 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.22 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.15 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.07 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.97 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.45 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.43 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.19 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.17 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.07 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 93.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.47 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.81 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 91.93 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.88 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.77 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 85.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.96 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 82.57 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 82.04 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.82 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=396.49 Aligned_cols=281 Identities=15% Similarity=0.184 Sum_probs=246.1
Q ss_pred ccEeeEeecCCCceEEEEEEeeC----CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEE
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVE 192 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~----g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~Va 192 (464)
|..+..+ .+|.+.|++|+|+|+ ++.|++ ++.| ++++||++..+++.. .++. ++...+.+|+
T Consensus 22 g~~~~~~-~~H~~~V~~v~~~~~~~~~~~~l~t----gs~D------~~v~vW~~~~~~~~~---~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 22 GILFKQE-QAHDDAIWSVAWGTNKKENSETVVT----GSLD------DLVKVWKWRDERLDL---QWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEEEEET-TSSSSCEEEEEEC-------CEEEE----EETT------SCEEEEEEETTEEEE---EEEECCCSSCEEEEE
T ss_pred hheeeec-ccCCCcEEEEEEecCCCCCCCEEEE----EcCC------CCEEEEECCCCCeee---eeeeccCCCCEEEEE
Confidence 3344455 569999999999985 668988 4566 799999998776421 1111 1223344899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
|+ |++.+|++|+.|++|||||+.+++++.++. ...|+.++|+|+ .|++|++||+++|+...++..+...
T Consensus 88 ~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 88 IS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp EC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred EC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 97 899999999999999999999999998886 457899999984 6789999999999999999977678
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
+.+++|+| ++..|++++.|++|+|||++++++++++.+|...|.+++|+|||++|++++ |++|+|||+ +++++.+|.
T Consensus 167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc
Confidence 89999999 467777789999999999999999999999999999999999999999999 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|..+ |.+++|+|||++|+|++. |++|+|||+.+++|++++.+|+.
T Consensus 246 ~h~~~-----v~~~~~sp~~~~l~s~s~-----------D~~v~iwd~~~~~~~~~~~~h~~------------------ 291 (321)
T 3ow8_A 246 GHASW-----VLNVAFCPDDTHFVSSSS-----------DKSVKVWDVGTRTCVHTFFDHQD------------------ 291 (321)
T ss_dssp CCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEECCCSS------------------
T ss_pred CCCCc-----eEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEcCCCC------------------
Confidence 99998 899999999999999987 99999999999999999999987
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+.|+||+.||+|+|||.
T Consensus 292 ----------------~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 292 ----------------QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=411.89 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=253.2
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.....+ .+|...|.++.|+|++..|+++ +.| ++++|||+.+|++...+..|+ ..+..|+|+ |+|
T Consensus 99 ~~~~~l-~gh~~~V~~~~~~p~~~~l~s~----s~D------g~i~vwd~~~~~~~~~l~~h~----~~V~~v~~~-~~~ 162 (410)
T 1vyh_C 99 PEKYAL-SGHRSPVTRVIFHPVFSVMVSA----SED------ATIKVWDYETGDFERTLKGHT----DSVQDISFD-HSG 162 (410)
T ss_dssp SCSCEE-ECCSSCEEEEEECSSSSEEEEE----ESS------SCEEEEETTTCCCCEEECCCS----SCEEEEEEC-TTS
T ss_pred CceEee-cccCCcEEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCcEEEEEeccC----CcEEEEEEc-CCC
Confidence 334566 4588999999999999999994 456 799999999999876665554 344589997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
++|++|+.|++|||||+.+++++.++. ...|.+|+|+|+ .|++|++||+++|++++++.+|...+..++|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 999999999999999999999999886 567999999884 7899999999999999999987788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC--------------------CcEEEEEe-CCeEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--------------------NQLFLTFR-NRTVA 327 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd--------------------gqllaS~s-D~TIk 327 (464)
+| ++..+++++.|++|+|||+.+++++..+.+|...|.+++|+|+ |++|+|++ |++|+
T Consensus 243 ~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 88 4667777899999999999999999999999999999999997 77999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|||+ +|+++.+|.+|..+ |++++|+|+|++|+||+. |++|+|||+.+++|++++.+|..
T Consensus 322 iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~g~~l~s~s~-----------D~~i~vwd~~~~~~~~~~~~h~~---- 381 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMKTLNAHEH---- 381 (410)
T ss_dssp EEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCEEEECCSS----
T ss_pred EEECCCCceEEEEECCCCc-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceEEEEcCCCC----
Confidence 9999 69999999999998 899999999999999987 99999999999999999999987
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|+++.|||||.||+|+||+.
T Consensus 382 ------------------------------~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 ------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ------------------------------cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8999999999999999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-50 Score=426.92 Aligned_cols=348 Identities=9% Similarity=0.105 Sum_probs=284.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.|..+.++ |++||+++.+|++++||+.+++ .+..+ ..|...|++|+|+|+|+.|++++ ...+ .-.++++
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~dg~~l~~~~--~~~~----~~~~v~~ 133 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVG--EGRE----RFGHVFL 133 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEEE--CCSS----CSEEEEE
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCCCCEEEEEE--CCCC----ceeEEEE
Confidence 45555555 9999999999999999987654 34566 45888899999999999999966 2222 0136667
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|+ +|+....+..|. +.+.+|+|+ |+|+ .|++|+.|++|||||+.+++++.++. ...|.+|+|+|+
T Consensus 134 wd--~~~~~~~l~gh~----~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQA----RAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp TT--TCCBCBCCCCCS----SCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ee--CCCCcceecCCC----CCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 76 677665555444 445599997 8987 69999999999999999999999887 467999999984
Q ss_pred ---CceeEEEEEcCCCcEEEEEe-------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE---------
Q 012410 238 ---SHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--------- 298 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~-------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--------- 298 (464)
.|++|+|||+++|+++.++. +|...+.+|+|+| ++..|++++.|++|+|||+.+++++.+
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 78999999999999999994 5667899999999 467788899999999999999887643
Q ss_pred ----------------------------------cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe-cc
Q 012410 299 ----------------------------------SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF-ED 341 (464)
Q Consensus 299 ----------------------------------l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl-~g 341 (464)
+.+|...|.+++|+|||++|+|++ |++|++||+ +|++...+ .+
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC
Confidence 458999999999999999999999 999999999 68877665 33
Q ss_pred CCCCcC--------------------------------------------------------------------------
Q 012410 342 HLLWHP-------------------------------------------------------------------------- 347 (464)
Q Consensus 342 H~~~~~-------------------------------------------------------------------------- 347 (464)
|...+.
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 432110
Q ss_pred --CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 348 --DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 348 --~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
...+++++|||||++||+|+. |++|+|||+.++++ +++ .+|...+....++++|..+++...+.
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~-----------D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQ-----------DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEET-----------TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ecCCCceEEEEeCCCCEEEEeCC-----------CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 012578999999999999987 99999999988764 455 78988777779999999999999999
Q ss_pred ccccccccc-----------ccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVG-----------EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~-----------~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.++|.... .+-..|++|+|||||+.|||||.|++|+|||.
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 988887542 13458999999999999999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=411.00 Aligned_cols=336 Identities=13% Similarity=0.225 Sum_probs=293.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |+.|++++.+|.+++|+ .+++.+..+ .+|...|.+++|+|+|+.|++++ .+ +++++|
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~-~~~~~~~~~-~~~~~~v~~v~~~~d~~~l~~~~----~d------~~i~~w 289 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVNGVAFRPDGQTIASAS----DD------KTVKLW 289 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC-TTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEE----TT------SCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEe-CCCCEEEEE-ecCCCCEEEEEEcCCCCEEEEEe----CC------CEEEEE
Confidence 456666665 88999999999999999 789999998 45888899999999999999844 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
+ ..|++...+..+. ..+..++|+ |||+.|++++.|++|++||+.+ ..+.++. ...|.+++|+|+
T Consensus 290 ~-~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 290 N-RNGQLLQTLTGHS----SSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp E-TTSCEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred e-CCCcEEEEEecCC----CCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 9 4566543333332 334589997 8999999999999999999765 4555555 578999999984
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++||. +|+++.++..|...+.+|+|+| ++..|++++.|++|+||| .++++++++.+|...|.+++|+||++
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~ 439 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQ 439 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEEC-TTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEe-CCCCEEEEecCCCCCeEEEEECCCCC
Confidence 6789999995 6999999997778899999998 467788899999999999 68999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 317 LFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 317 llaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+||+++ |++|++||.+|+++.++.+|... |.+++|+|||++||+++. |++|+||| .+|+|++
T Consensus 440 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----v~~~~~spd~~~las~~~-----------d~~i~iw~-~~~~~~~ 502 (577)
T 2ymu_A 440 TIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWN-RNGQLLQ 502 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSCEEEEEET-----------TSEEEEEE-TTSCEEE
T ss_pred EEEEEcCCCEEEEEECCCCEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC-----------CCEEEEEc-CCCCEEE
Confidence 999999 99999999999999999999987 899999999999999987 99999999 5999999
Q ss_pred EEccCCCCCCcccccCCCCCCcccccccccccccccccc-------ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA-------LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++.+|+..+....++++|..+++...+...++|+..++. ...|++|+|+|||+.|+||+.|++|+|||
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999877777889999999999999999999865543 34899999999999999999999999998
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=427.74 Aligned_cols=329 Identities=9% Similarity=0.017 Sum_probs=269.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC--
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-- 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-- 175 (464)
|+.|++.+ .+.+++|++.+++.+.++. +|.+.|.+++|+|+|++||++ +.| ++++|||+.+++...
T Consensus 30 g~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg----~~d------~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 30 GDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASG----DVH------GNVRIWDTTQTTHILKT 97 (611)
T ss_dssp SSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEE----ETT------SEEEEEESSSTTCCEEE
T ss_pred CCEEEeCC-CCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEE----eCC------CCEEEeECCCCcceeeE
Confidence 88888876 5699999998999999994 588999999999999999994 456 799999998766421
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCC----cEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------Cce
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDS----IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHV 240 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~----tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~ 240 (464)
.++. +.+.+.+|+|+ |||+.||+++.|. +|++|| +|+++.++. ...|.+|+|+|+ .|+
T Consensus 98 ~~~~----~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 98 TIPV----FSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEEC----SSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eecc----cCCceEEEEEC-CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 1122 23455689997 8999999988763 788888 567766665 568999999884 678
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-------cCCCceEEEEEcC
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLY 313 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-------gh~~~v~sv~Fsp 313 (464)
+|+|||.++++++.+|.+|...|.+|+|+| ++..|++++.|++|+|||+.+|+++.++. +|...|.+++|+|
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 999999999999999998878999999999 46677779999999999999999999884 8999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEe-------------------------------------------ccCCCCcCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSF-------------------------------------------EDHLLWHPD 348 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl-------------------------------------------~gH~~~~~~ 348 (464)
||++|||++ |++|||||+ +|+++.++ .+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~--- 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA--- 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC---
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC---
Confidence 999999999 999999999 58776554 477776
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|++++|+|||++|+|++. |++|++||+.+|+|+..+ .+|...+....+++ +..+++...+++.++
T Consensus 327 --v~~l~~spdg~~l~s~s~-----------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 327 --ITALSSSADGKTLFSADA-----------EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWDDHLKV 392 (611)
T ss_dssp --EEEEEECTTSSEEEEEET-----------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETTTEEEE
T ss_pred --EEEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCceeeecccCCcceEEEEEECC-CCcEEEEEcCCceEE
Confidence 899999999999999987 999999999999998877 56765333333432 234455555555555
Q ss_pred cccccc------------------------------------------------cccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 428 RSTVGE------------------------------------------------ALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 428 ~~~~~~------------------------------------------------~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|..... .-..|++++|||||+.||+|+.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 442210 11358899999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
+|||
T Consensus 473 ~lwd 476 (611)
T 1nr0_A 473 HVYK 476 (611)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-49 Score=387.29 Aligned_cols=282 Identities=12% Similarity=0.178 Sum_probs=246.5
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
..+...++ .+|...|+++.|+|+|+.|+++ +.| ++++||++.+++....++.+. ..+.+++|+ |
T Consensus 44 ~~~~~~~l-~gH~~~v~~~~~s~d~~~l~s~----s~D------g~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s-~ 107 (340)
T 1got_B 44 QMRTRRTL-RGHLAKIYAMHWGTDSRLLLSA----SQD------GKLIIWDSYTTNKVHAIPLRS----SWVMTCAYA-P 107 (340)
T ss_dssp CCCEEEEE-CCCSSCEEEEEECTTSSEEEEE----ETT------TEEEEEETTTCCEEEEEECSS----SCEEEEEEC-T
T ss_pred cchhheee-cCCCCceEEEEECCCCCEEEEE----eCC------CcEEEEECCCCCcceEeecCC----ccEEEEEEC-C
Confidence 34556677 4588999999999999999994 455 799999999998765444333 345589997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCe----EEEEec--CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~----~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+|++||+|+.|++|+|||+.+++ +...+. ...|..++|++ +.|++|+|||+++|+++.++.+|...+
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence 99999999999999999998763 444554 56799999976 478999999999999999999877899
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
.+++|+| ++..+++++.|++|+|||+++++++.++.+|...|.+++|+|+|++||+++ |++|+|||+ +++++.++..
T Consensus 188 ~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 9999999 456777789999999999999999999999999999999999999999999 999999999 5888888864
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
+... +.|.+++|+|||++|++|+. |++|+|||+.+++++.++.+|..
T Consensus 267 ~~~~---~~v~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~~~~h~~------------------- 313 (340)
T 1got_B 267 DNII---CGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN------------------- 313 (340)
T ss_dssp TTCC---SCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECCSS-------------------
T ss_pred CCcc---cceEEEEECCCCCEEEEECC-----------CCeEEEEEcccCcEeeEeecCCC-------------------
Confidence 3321 23899999999999999987 99999999999999999999997
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.|||||.|++|+|||
T Consensus 314 ---------------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 ---------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=382.17 Aligned_cols=281 Identities=11% Similarity=0.166 Sum_probs=244.5
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+...++ .+|...|+++.|+|+|..|++ ++.| ++++|||..+++....+..+ ..++.+++|+ |+|
T Consensus 55 ~~~~~l-~gH~~~V~~~~~s~d~~~l~s----~s~D------g~v~vWd~~~~~~~~~~~~~----~~~v~~~~~s-p~g 118 (354)
T 2pbi_B 55 KTRRTL-KGHGNKVLCMDWCKDKRRIVS----SSQD------GKVIVWDSFTTNKEHAVTMP----CTWVMACAYA-PSG 118 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECTTSSEEEE----EETT------SEEEEEETTTCCEEEEEECS----SSCCCEEEEC-TTS
T ss_pred EEEEEe-cCCCCeEEEEEECCCCCEEEE----EeCC------CeEEEEECCCCCcceEEecC----CCCEEEEEEC-CCC
Confidence 455677 459999999999999999999 4466 79999999888875443333 2456699997 999
Q ss_pred cEEEEecCCCcEEEEeCCCC------eEEE--EecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 199 KVLTYSAQDSIYKVFDLKNY------TMLY--SISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg------~~l~--tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
+.||+|+.|+++++|++... .... ..+...|..++|+|+ .|++|+|||+++|+++++|.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 99999999999999998653 1223 335678999999874 7899999999999999999987788
Q ss_pred eeeEEEEccC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 263 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 263 ~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+..++|.|.. +..+++++.|++|++||++++++++++.+|...|.+++|+|+|++|||++ |++|+|||+ .++++..+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999998853 45677789999999999999999999999999999999999999999999 999999999 58888888
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
..|.... .+.+++|+|||++|++|+. |++|+|||+.+|+++.++.+|.+
T Consensus 279 ~~~~~~~---~~~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~l~~h~~----------------- 327 (354)
T 2pbi_B 279 SKESIIF---GASSVDFSLSGRLLFAGYN-----------DYTINVWDVLKGSRVSILFGHEN----------------- 327 (354)
T ss_dssp CCTTCCS---CEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCSEEEEECCCSS-----------------
T ss_pred cCCCccc---ceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCceEEEEECCCC-----------------
Confidence 7665422 2789999999999999987 99999999999999999999997
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.|||||.|++|+||+
T Consensus 328 -----------------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 -----------------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=389.94 Aligned_cols=305 Identities=12% Similarity=0.115 Sum_probs=228.4
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
.++++...-+...+.|++....+ ..|...|++|+|||||+.|+++|.+.. .+|+ .++++|+..+|.....+
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd---~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSS-RTWG---GSIWVFKDPEGAPNESL 86 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC---EEEEEESSCC---CGGG
T ss_pred cceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCC-cccc---CeEEEEECCCCCcceeE
Confidence 34555555566778887654443 358889999999999999999774432 1222 57889999888876544
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLK 243 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIk 243 (464)
.....++...+..|+|+ |||++|+ ++.|++|||||+.+++++... +...|.+|+|+|+ .|++|+
T Consensus 87 ~~~~~~~~~~V~~~~~s-~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWV-SEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CSEEEECSSCEEEEEEE-TTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ecccCCCCCCEEEEEEc-CCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 33333333445689998 8997665 678999999999999876432 2467999999984 789999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCC-CcEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLT 320 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fspd-gqllaS 320 (464)
|||+++|+++.+|+.|...+.+|+|++..+..+++++.|++|+|||+++++++..+. .|...+.+++|+|+ +++||+
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 999999999999998778999999998644567788999999999999999887654 56678999999997 578999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++ |++|+|||+ +++++++|.+|... |++++|+||| ++|||||. |++|+|||+.+|++++++
T Consensus 245 g~~d~~i~~wd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~~lasgs~-----------D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDSAQTSAVHSQN-----ITGLAYSYHSSPFLASISE-----------DCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EESSSCEEEEESSCGGGCEEECCCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTSCEEEEEC
T ss_pred eecccceeEEECCCCcEeEEEecccee-----EEEEEEcCCCCCEEEEEeC-----------CCEEEEEECCCCcEeEEC
Confidence 99 999999999 69999999999988 8999999998 68999987 999999999999999876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
+|++ .|++|+||| |++.|||||.||+|++|+.
T Consensus 309 -~H~~----------------------------------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 309 -SHRD----------------------------------FVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp -CCSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred -CCCC----------------------------------CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 8986 899999999 8999999999999999984
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=394.83 Aligned_cols=295 Identities=12% Similarity=0.154 Sum_probs=249.8
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
+...|+..+.++..+| .+|...|++|.|+|+|+.|+++ +.| ++++|||+.+|+....+..+. .++
T Consensus 47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~~~~l~s~----s~D------~~v~iWd~~~~~~~~~~~~h~----~~v 111 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPEKNWIVSA----SQD------GRLIVWNALTSQKTHAIKLHC----PWV 111 (380)
T ss_dssp GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTTSSCEEEE----ETT------SEEEEEETTTTEEEEEEECCC----TTC
T ss_pred cccccccceeEEeecc-cccccEEEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCccceEEecCC----CCE
Confidence 3455777777888889 5599999999999999999994 456 799999999988765444443 445
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-------EEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCC
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDG 250 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-------~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG 250 (464)
..++|+ |||++||+|+.|++++|||+.+.. +..++. ...|.+++|+| +.|++|+|||+++|
T Consensus 112 ~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred EEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 589997 899999999999999999997532 222333 45688888866 47899999999999
Q ss_pred cEEEEE-----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 251 TVLKVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 251 ~~l~tl-----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+++.++ .+|...+.+++|.+.++..+++++.|++|+|||++ ++++++++.+|...|.+++|+|||++|+|++ |
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 999988 44556789999988666778889999999999998 5689999999999999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCc--CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE---
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI--- 397 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~--~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl--- 397 (464)
++|+|||+ +|+++.++..|.... ....|.+++|+|+|++|++|+. ||+|+|||+.+++++.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------NGDCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------TSCEEEEETTTCCEEEEECCS
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------CCCEEEEECCCCceEEEEecc
Confidence 99999999 699999998764321 0112789999999999999986 999999999999999998
Q ss_pred -ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 398 -NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 -~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+|.+ .|++|+|||||+.|||||.|++|+||+.
T Consensus 340 ~~~h~~----------------------------------~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 340 QNSHEG----------------------------------RISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCCC----------------------------------CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cCCCCC----------------------------------ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 67876 8999999999999999999999999984
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-48 Score=373.96 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=238.4
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
...++. +|.+.|.+|+|+|+|+.|+++ +.| ++++||++.+|+....+..++ ..+..++|+ |+|+
T Consensus 5 ~~~~~~-~h~~~V~~~~fsp~~~~l~s~----~~d------g~v~lWd~~~~~~~~~~~~~~----~~v~~~~~~-~~~~ 68 (304)
T 2ynn_A 5 IKKTFS-NRSDRVKGIDFHPTEPWVLTT----LYS------GRVELWNYETQVEVRSIQVTE----TPVRAGKFI-ARKN 68 (304)
T ss_dssp CEEEEE-EECSCEEEEEECSSSSEEEEE----ETT------SEEEEEETTTTEEEEEEECCS----SCEEEEEEE-GGGT
T ss_pred eEEeec-CCCCceEEEEECCCCCEEEEE----cCC------CcEEEEECCCCceeEEeeccC----CcEEEEEEe-CCCC
Confidence 345664 488889999999999999994 455 799999999988755444333 334589998 8999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F 268 (464)
+|++|+.|++|||||+++++++.++. .+.|.+|+|+|+ .|++|+|||++++ .+.+++.+|.+.+.+|+|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 99999999999999999999998886 567999999883 7899999999988 455678877789999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|.++..+++++.|++|+|||++++++...+ .+|...+..+.|+| ++++|+|++ |++|+|||+ +|+++.+|++|.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~ 228 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence 9965677888999999999999998876555 45667888899986 889999999 999999999 699999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. |..++|+|++++||||+. ||+|||||+.++++++++.+|..
T Consensus 229 ~~-----v~~~~~~p~~~~l~s~s~-----------Dg~i~iWd~~~~~~~~~~~~~~~--------------------- 271 (304)
T 2ynn_A 229 SN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE--------------------- 271 (304)
T ss_dssp SC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEECCSSS---------------------
T ss_pred CC-----EEEEEECCCCCEEEEEcC-----------CCeEEEEECCCCceeeeccCCCc---------------------
Confidence 88 899999999999999997 99999999999999999999986
Q ss_pred cccccccccccccCEEEEEEcCCCC--EEEEeeCCCcEE
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVH 460 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~--~LaSgs~DgtVr 460 (464)
.|++++|+|+|. .||+|+.||.+-
T Consensus 272 -------------~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 272 -------------RSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp -------------SEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred -------------cEEEEEECCCCCceEEEEecCCceEE
Confidence 899999999986 589999888653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=382.86 Aligned_cols=285 Identities=13% Similarity=0.098 Sum_probs=223.1
Q ss_pred EeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-------cCCCCCcccceeec
Q 012410 111 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-------RGKPDSGFALFESE 183 (464)
Q Consensus 111 ~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-------~G~~~~~~~l~~~~ 183 (464)
+.|+...+.+. .+...|.++.|||||+.|+++| + .++++|+.. ......+......+
T Consensus 17 r~w~~~~~~~~-----~~~~~v~~~~fs~dG~~l~~~s----d-------~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~ 80 (344)
T 4gqb_B 17 REWNLPPNAPA-----CMERQLEAARYRSDGALLLGAS----S-------LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ 80 (344)
T ss_dssp ------CCSCS-----SCCSEEEEEEECTTSCEEEEEE----C-------CSSSCCCEEEEEESSGGGTTCGGGCSEEEE
T ss_pred cccCCCCCCcc-----cccCCEEEEEECCCCCEEEEEe----C-------CceEEeeceeeeeccccccCCcceeeeeec
Confidence 45654444332 3556799999999999998844 3 244555432 11111111111111
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEEEEEcCC
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLKILSIED 249 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIklWdi~t 249 (464)
....+..|+|+ ||+ .|++|+.|++|||||+.+++++.++ +.+.|.+|+|+|+ .|++|+|||+++
T Consensus 81 ~~~~v~~~~~s-~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 81 TEAGVADLTWV-GER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp ESSCEEEEEEE-TTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCEEEEEEe-CCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 12335589998 787 5778999999999999999876443 2568999999884 789999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcC-CCcEEEEEe-CCe
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY-ENQLFLTFR-NRT 325 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fsp-dgqllaS~s-D~T 325 (464)
|+++++|.+|...|.+++|+++....+++++.|++|+|||+++++++..+. .|...+.+++|+| ++++||+++ |++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999998889999999999644456778999999999999999998875 4556789999998 567899999 999
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
|+|||+ +|+++.+|++|... |++|+|+||| ++|||||. |++|+|||+.+|+++. +.+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~g~~~lasgs~-----------D~~i~vwd~~~~~~~~-~~~H~~- 300 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQC-----VTGLVFSPHSVPFLASLSE-----------DCSLAVLDSSLSELFR-SQAHRD- 300 (344)
T ss_dssp EEEEESCC--CCEEEECCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTCCEEEE-ECCCSS-
T ss_pred EEEEECCCCcEEEEEcCCCCC-----EEEEEEccCCCeEEEEEeC-----------CCeEEEEECCCCcEEE-EcCCCC-
Confidence 999999 69999999999998 8999999998 58999987 9999999999999875 689987
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|||||+ .|+|||.|++|++|+.
T Consensus 301 ---------------------------------~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 ---------------------------------FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ---------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ---------------------------------CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999999997 5789999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=394.56 Aligned_cols=336 Identities=14% Similarity=0.231 Sum_probs=291.7
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..+..+.+. |++|++.+.+|.+++|+ .+++.+..+.. |...|.+++|+|+|+.|++++ .| +++++|
T Consensus 181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~-~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~----~d------~~i~~w 248 (577)
T 2ymu_A 181 SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS----DD------KTVKLW 248 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEEC-CSSCEEEEEECTTSSCEEEEE----TT------SCEEEE
T ss_pred cceeeeeecCCCCEEEEEcCCCEEEEEe-CCCcEEEEEec-CCCCEEEEEECCCCCEEEEEe----CC------CEEEEE
Confidence 344445454 88999999999999999 78999999954 888899999999999999944 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
+ ..|++...+..+. ..+.+|+|+ |||+.|++++.|++|++||. +++++.++. ...|++++|+|+
T Consensus 249 ~-~~~~~~~~~~~~~----~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 249 N-RNGQLLQTLTGHS----SSVNGVAFR-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp C-TTSCEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred e-CCCCEEEEEecCC----CCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEE
Confidence 9 4566543333332 445589997 89999999999999999996 678888776 568999999884
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++||+. ++.+.++..+...+.+++|+| ++..+++++.|++|++|| .++++++++.+|...|.+++|+|||+
T Consensus 322 ~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 322 SDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCC
Confidence 67899999986 667788887778899999998 467777789999999999 68999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 317 LFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 317 llaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+||+++ |++|+|||.+|+++.++.+|... |++++|+||+++||+++. |++|+|||+ +++++.
T Consensus 399 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-----v~~~~~s~d~~~l~~~~~-----------d~~v~~w~~-~~~~~~ 461 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDDQTIASASD-----------DKTVKLWNR-NGQLLQ 461 (577)
T ss_dssp CEEEEETTSEEEEECTTCCEEEEEECCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEET-TSCEEE
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEecCCCCC-----eEEEEECCCCCEEEEEcC-----------CCEEEEEEC-CCCEEE
Confidence 999999 99999999999999999999987 899999999999999987 999999995 899999
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccc-------cCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL-------EDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++.+|...+....+++++..+++...+...++|+..++.+ ..|++|+|||||+.||||+.||+|+|||
T Consensus 462 ~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999998666678889999999999999999998655433 3899999999999999999999999998
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=381.13 Aligned_cols=274 Identities=15% Similarity=0.236 Sum_probs=239.8
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec--------------cccCceEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE--------------SLKWPGFVE 192 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~--------------~~~~~~~Va 192 (464)
.|...|.+++|||||+.||+ +++ ++++||++.+|+....+..+... ...++.+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~----g~~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT----GCN-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE----ECB-------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEE----EcC-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 48888999999999999988 344 48999999999875433222110 011355899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
|+ |||++||+|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|+|||+++|++..++.+. ..
T Consensus 131 ~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~ 208 (393)
T 1erj_A 131 FS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DG 208 (393)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SC
T ss_pred EC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CC
Confidence 97 899999999999999999999999998887 467999999884 7899999999999999999864 67
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-------ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 332 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-------~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-- 332 (464)
+..++|+|.++..+++++.|++|+|||++++++++.+ .+|...|.+++|+|||++|+|++ |++|+|||+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 8999999966677888999999999999999998877 68999999999999999999999 9999999983
Q ss_pred -----------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 333 -----------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 333 -----------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+.|..++.+|..+ |.+++|+|+|++|+||+. |++|+|||+.+|+++.++++|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~sgs~-----------D~~v~iwd~~~~~~~~~l~~h~ 352 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK-----------DRGVLFWDKKSGNPLLMLQGHR 352 (393)
T ss_dssp ------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-----------TSEEEEEETTTCCEEEEEECCS
T ss_pred CCcccccCCCCCcceEEEecccCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEECCCC
Confidence 5678899999998 899999999999999997 9999999999999999999999
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC------CCCEEEEeeCCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE------ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp------Dg~~LaSgs~DgtVrlWd 463 (464)
+ .|.+++|+| +++.|||||.||+|+||+
T Consensus 353 ~----------------------------------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 353 N----------------------------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp S----------------------------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred C----------------------------------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 7 899999986 799999999999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-46 Score=363.03 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=239.7
Q ss_pred cEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~p 196 (464)
++..+| .+|...|.+|+|+|++ +.|++ ++.| +++++|++..++...+.++.+. .+...+..++|+ |
T Consensus 8 ~l~~~l-~gH~~~V~~l~~~~~~~~~l~s----~s~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~ 75 (319)
T 3frx_A 8 VLRGTL-EGHNGWVTSLATSAGQPNLLLS----ASRD------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-A 75 (319)
T ss_dssp EEEEEE-CCCSSCEEEEEECSSCTTEEEE----EETT------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-T
T ss_pred EEEEEE-ccccceEEEEEccCCCccEEEE----ecCC------ccEEEecCCCCCccccccceEEeCCcccEEEEEEC-C
Confidence 344567 5699999999999976 78888 4566 7999999976543222222221 122334489997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
||++|++|+.|++|||||+++++++.++. ...|.+|+|+| +.|++|+|||++ |+++.++.+|...+..+
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 99999999999999999999999998876 56899999987 378999999996 78999999777889999
Q ss_pred EEEccC-----CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 267 DFIEQF-----NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 267 ~F~~~~-----~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|+|.. +..+++++.|++|++||++++++...+.+|...|.+++|+|||++|||++ |++|+|||+ +++++.++
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 998842 23677789999999999999999999999999999999999999999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
..|. . |.+++|+|||.+|++++ +..|++|++.++.++..++++... ..
T Consensus 235 ~~~~-~-----v~~~~~sp~~~~la~~~------------~~~i~v~~~~~~~~~~~~~~~~~~-~~------------- 282 (319)
T 3frx_A 235 SAQD-E-----VFSLAFSPNRYWLAAAT------------ATGIKVFSLDPQYLVDDLRPEFAG-YS------------- 282 (319)
T ss_dssp ECCS-C-----EEEEEECSSSSEEEEEE------------TTEEEEEEETTEEEEEEECCCCTT-CC-------------
T ss_pred cCCC-c-----EEEEEEcCCCCEEEEEc------------CCCcEEEEeCcCeeeeccCccccc-cc-------------
Confidence 8764 3 89999999999999987 567999999999999998765420 00
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...-..|.+++|||||+.||||+.||+|+|||.
T Consensus 283 ------------~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 283 ------------KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp ------------GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ------------cCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 001127899999999999999999999999983
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=368.35 Aligned_cols=283 Identities=12% Similarity=0.108 Sum_probs=234.1
Q ss_pred ccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 118 NRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 118 g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
.+++.++.. |.+ .|++++|+|+|+.||+ ++.| ++|+||++..++...... +..++...+.+|+|+ |
T Consensus 5 ~~~~~~~~~-h~~~~v~~l~~sp~g~~las----~~~D------~~i~iw~~~~~~~~~~~~-~~~~h~~~v~~~~~s-p 71 (345)
T 3fm0_A 5 LVLLGRVPA-HPDSRCWFLAWNPAGTLLAS----CGGD------RRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWS-P 71 (345)
T ss_dssp EEEEEEECC-STTSCEEEEEECTTSSCEEE----EETT------SCEEEEEEETTEEEEEEE-ECSSCSSCEEEEEEC-T
T ss_pred EEEeeeecC-CCCCcEEEEEECCCCCEEEE----EcCC------CeEEEEEcCCCcceeeee-eccccCCcEEEEEEC-C
Confidence 456778854 665 8999999999999999 4456 799999998875421111 111233445589997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCC--eEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC---cEEEEEeeCCc
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG---TVLKVFYHLLH 261 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg--~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG---~~l~tl~~~~~ 261 (464)
||++||+|+.|++|+|||+.++ +++.++. ...|.+|+|+|+ .|++|+|||+.++ +++.++..|..
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 9999999999999999999877 4677776 468999999984 7899999999877 46677877778
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-----
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----- 332 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~----- 332 (464)
.+..|+|+| ++..|++++.|++|+|||+.+++ ++.++.+|...|++++|+|+|++|||++ |++|+|||. .
T Consensus 152 ~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 152 DVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp CEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 899999999 46778889999999999999886 6678999999999999999999999999 999999995 2
Q ss_pred ----------CceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------
Q 012410 333 ----------GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------- 392 (464)
Q Consensus 333 ----------Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--------- 392 (464)
.+|+.++.+ |... |++++|+|++.+||++|. |++|+||++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~-----------d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRT-----IYDIAWCQLTGALATACG-----------DDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSC-----EEEEEECTTTCCEEEEET-----------TSCEEEEEECTTSCTTSCCEEE
T ss_pred cceeeccCCccceeEEecCCCCCc-----EEEEEEecCCCEEEEEeC-----------CCeEEEEEeCCCCCcceeeEEE
Confidence 256778887 7666 899999999999999987 9999999987653
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
....+.+|.. .|++|+|+|++ ..|||||.||+|+||+.
T Consensus 295 ~~~~~~~h~~----------------------------------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 295 TAHLHQAHSQ----------------------------------DVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEEETTSSSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EeeecccccC----------------------------------cEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 1233457775 89999999998 49999999999999973
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=350.87 Aligned_cols=282 Identities=14% Similarity=0.171 Sum_probs=244.1
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+...++ .+|...|.+++|+|+|+.|+++ +.| ++++||++.+|++...+..+. ..+..++|+ |||
T Consensus 14 ~~~~~~-~gh~~~v~~~~~s~~~~~l~s~----~~d------g~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~-~~~ 77 (312)
T 4ery_A 14 ALKFTL-AGHTKAVSSVKFSPNGEWLASS----SAD------KLIKIWGAYDGKFEKTISGHK----LGISDVAWS-SDS 77 (312)
T ss_dssp EEEEEE-CCCSSCEEEEEECTTSSEEEEE----ETT------SCEEEEETTTCCEEEEECCCS----SCEEEEEEC-TTS
T ss_pred eeEEEE-cccCCcEEEEEECCCCCEEEEe----eCC------CeEEEEeCCCcccchhhccCC----CceEEEEEc-CCC
Confidence 344456 5688999999999999999994 455 699999999988754443333 334489997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
++|++|+.|++|+|||+.+++++.++. ...|..++|+|+ .|++|++||++++++++++..+...+.+++|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 999999999999999999999998886 567999999883 7899999999999999999977788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
+| ++..+++++.|++|++||+++++++..+. .|...+..++|+|+|++|++++ |++|+|||+ +|+++.++.+|...
T Consensus 158 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 158 NR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred cC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence 98 46677789999999999999999988764 5566788999999999999999 999999999 69999999999875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
... +......+++++|++|+. ||+|+|||+.++++++++++|..
T Consensus 237 ~~~--~~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h~~----------------------- 280 (312)
T 4ery_A 237 KYC--IFANFSVTGGKWIVSGSE-----------DNLVYIWNLQTKEIVQKLQGHTD----------------------- 280 (312)
T ss_dssp SSC--CCEEEECSSSCEEEECCT-----------TSCEEEEETTTCCEEEEECCCSS-----------------------
T ss_pred eEE--EEEEEEeCCCcEEEEECC-----------CCEEEEEECCCchhhhhhhccCC-----------------------
Confidence 432 344555688999999986 99999999999999999999987
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEee--CCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVrlWd~ 464 (464)
.|++++|+|+++.|||++ .|++|++|+.
T Consensus 281 -----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 281 -----------VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -----------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -----------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999997 6999999973
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=356.74 Aligned_cols=282 Identities=18% Similarity=0.168 Sum_probs=227.3
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-cccCceEEEEeC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDD 195 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~~~~~VaFs~ 195 (464)
+.+++..+. +|.+.|+++.|+|+ .|++ ++.| ++++||++..++... ...+... +.+.+.+|+|+
T Consensus 3 ~~~~~~~~~-~h~~~v~~~~~s~~--~las----~~~D------~~i~lw~~~~~~~~~-~~~~~~~~h~~~v~~v~~s- 67 (330)
T 2hes_X 3 SINLIKSLK-LYKEKIWSFDFSQG--ILAT----GSTD------RKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAWR- 67 (330)
T ss_dssp CCEEEEEEE-CCSSCEEEEEEETT--EEEE----EESS------SCEEEEECSSSCCEE-EEEECTTCCCSCEEEEEEC-
T ss_pred ccccceeec-cCCCceeeeccCCC--EEEE----EcCC------CEEEEEEecCCCeEE-EEEEecCCccCCEEEEEEC-
Confidence 456777885 58999999999996 7888 4456 799999998765311 0111111 33445589997
Q ss_pred CCCcEEEEecCCCcEEEEeCC-------CCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcC-C---CcEEE
Q 012410 196 VNGKVLTYSAQDSIYKVFDLK-------NYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIE-D---GTVLK 254 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~-------tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~-t---G~~l~ 254 (464)
|+|++||+|+.|++|||||+. +++++.++. ...|.+|+|+|+ .|++|+|||+. . .+++.
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 899999999999999999985 346777776 568999999984 78999999994 3 36888
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC--cEEEEcccCCCceEEEEEcCC--CcEEEEEe-CCeEEEE
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~Fspd--gqllaS~s-D~TIklW 329 (464)
++.+|...+.+|+|+| ++..|++++.|++|||||+.++ +|+.++.+|...|++++|+|+ +.+|+|++ |++|+||
T Consensus 148 ~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 9987778899999999 4667788999999999999887 789999999999999999999 78999999 9999999
Q ss_pred eCC-C--------ceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--EEEEE
Q 012410 330 NFR-G--------ELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKI 397 (464)
Q Consensus 330 d~~-G--------e~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--cl~tl 397 (464)
|+. + +++.++.+ |..+ |++++|+|++ +|||++. ||+|+|||+.+|+ ++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~~-~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQ-----VYNVAWGFNG-LIASVGA-----------DGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSC-----EEEEEECTTS-CEEEEET-----------TSCEEEEEEETTEEEEEEEE
T ss_pred EecCCCccccceeEEeeecccccccc-----eEEEEEcCCC-EEEEEeC-----------CCEEEEEEcCCCceEEEecc
Confidence 984 4 57788887 8877 8999999776 7889886 9999999998884 45443
Q ss_pred -ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC--CCCEEEEeeCCCcEEeccC
Q 012410 398 -NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 -~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp--Dg~~LaSgs~DgtVrlWd~ 464 (464)
.+|.. ..|++|+|+| |++.|||||.||+|+|||.
T Consensus 290 ~~~h~~---------------------------------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 ALCHGV---------------------------------YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SCTTTT---------------------------------SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cccccc---------------------------------ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 67763 1699999999 8999999999999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=355.97 Aligned_cols=316 Identities=12% Similarity=0.090 Sum_probs=266.7
Q ss_pred hhhhccccceEEEEec--cc-eeehhccCCeEEeeec----cccc------EeeEeec---------CCCceEEEEEEee
Q 012410 82 LPFLMKRTKVIEIVAA--RD-IVFALAHSGVCAAFSR----ETNR------RICFLNV---------SPDEVIRSLFYNK 139 (464)
Q Consensus 82 l~~l~~~s~v~~~~~a--g~-~l~~l~~~g~~~~~~~----~~g~------~l~~ln~---------~~~~~i~Sv~fs~ 139 (464)
|.......+|..+.+. |+ +|++++.+|.+++|++ .+|+ ....+.. +|...|.+++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 3333334567777776 77 9999999999999999 8888 4555533 1677899999999
Q ss_pred CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe
Q 012410 140 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 219 (464)
Q Consensus 140 ~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~ 219 (464)
+|+.|++++ .+ ++++||+ .+|+....+..+. ..+.+++|+ |+|+.|++++.|++|++||+.+++
T Consensus 119 ~~~~l~~~~----~d------g~i~i~~-~~~~~~~~~~~~~----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 119 DGNSIVTGV----EN------GELRLWN-KTGALLNVLNFHR----APIVSVKWN-KDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp TSSEEEEEE----TT------SCEEEEE-TTSCEEEEECCCC----SCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCEEEEEe----CC------CeEEEEe-CCCCeeeeccCCC----ccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCc
Confidence 999999944 45 6899999 6676644333332 345589997 899999999999999999999999
Q ss_pred EEEEecC--CC---------------EeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 220 MLYSISD--KH---------------VQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 220 ~l~tl~~--~~---------------V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
++..+.. .. |.+++|+| +.|+.|++||+.+++++.++..+...+..++|+|. +..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCE
Confidence 9988762 33 88888876 47789999999999999999877788999999994 667
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
+++++.|++|+|||+.+++++..+.+|...|.+++|+|++ +|++++ |++|++||+ +++++.++.+|... |.+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~ 335 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFA 335 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEE
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEE
Confidence 8889999999999999999999999999999999999999 888988 999999999 69999999999887 899
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--------------------EEEEEccCCCCCCcccccCCC
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------------------CLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--------------------cl~tl~gh~~~~~~~~~~~~~ 413 (464)
++|+|||++||+++. ||+|+|||+.+++ ++.++.+|..
T Consensus 336 ~~~s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 393 (425)
T 1r5m_A 336 GRISQDGQKYAVAFM-----------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD----------- 393 (425)
T ss_dssp EEECTTSSEEEEEET-----------TSCEEEEECHHHHC--------------CEECCEEEEECCTTC-----------
T ss_pred EEEcCCCCEEEEEEC-----------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc-----------
Confidence 999999999999987 9999999999999 9999999853
Q ss_pred CCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 414 STGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
. .|++++|+|||+.||+|+.||+|++||.
T Consensus 394 ----------------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 394 ----------------------NDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ----------------------CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ----------------------CCceEEEEccCCCceEEEEecCceEEEEee
Confidence 1 6999999999999999999999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=340.96 Aligned_cols=295 Identities=13% Similarity=0.146 Sum_probs=237.8
Q ss_pred cccccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEE
Q 012410 115 RETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVE 192 (464)
Q Consensus 115 ~~~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~Va 192 (464)
.++.++..+| .+|...|++|+|+|+ ++.|+| ++.| ++|+||++.+++...+.+..+. ++...+.+++
T Consensus 25 ~~~~~l~~tL-~GH~~~V~~v~~sp~~~~~l~S----~s~D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 25 TEQMTLRGTL-KGHNGWVTQIATTPQFPDMILS----ASRD------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93 (340)
T ss_dssp -CEEEEEEEE-CCCSSCEEEEEECTTCTTEEEE----EETT------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred CCceEEEEEE-CCccCCEEEEEEeCCCCCEEEE----EcCC------CeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence 3455666788 569999999999998 689999 4466 7999999998887554443331 1234455899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE-EeeCCc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV-FYHLLH 261 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t-l~~~~~ 261 (464)
|+ |||++|++|+.|++|++|+...+....... ...+..+.+++ +.|+.+++||+........ +..+..
T Consensus 94 ~s-~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 94 IS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EC-CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 97 899999999999999999999988876554 45677777766 4789999999986655433 235567
Q ss_pred ceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+..++|++..... +++++.|++|++||+++++++..+.+|...|.+++|+|||++|++++ |++|+|||+ +++++..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 78999998865444 45578999999999999999999999999999999999999999999 999999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+.+|.. |..++|+|++.+++++. |++|+|||+.+++++.+++.+.....
T Consensus 253 ~~~~~~------v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~------------- 301 (340)
T 4aow_A 253 LDGGDI------INALCFSPNRYWLCAAT------------GPSIKIWDLEGKIIVDELKQEVISTS------------- 301 (340)
T ss_dssp EECSSC------EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCC------------------
T ss_pred ecCCce------EEeeecCCCCceeeccC------------CCEEEEEECCCCeEEEeccccceeee-------------
Confidence 988753 88999999998887654 89999999999999999876542000
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.......|++|+|+|||+.||||+.||+|+|||.
T Consensus 302 ------------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 302 ------------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ------------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0011128999999999999999999999999983
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=353.00 Aligned_cols=291 Identities=11% Similarity=0.122 Sum_probs=228.7
Q ss_pred ccEeeEeecCCCceEEEEEE-----ee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--cccee-eccccCc
Q 012410 118 NRRICFLNVSPDEVIRSLFY-----NK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFE-SESLKWP 188 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~f-----s~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~l~~-~~~~~~~ 188 (464)
.+++..|. +|.+.|++|+| ++ +|+.|++ ++.| ++++||++..++.... .+... .++...+
T Consensus 11 ~~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~s----gs~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILE-GHSDWVTSIVAGFSQKENEDSPVLIS----GSRD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEEEE-CCSSCEEEEEECCCSSTTCCCCEEEE----EETT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE
T ss_pred eeeeeeec-cchhhhhheeeEEEeecCCCCCEEEE----EcCC------CEEEEEECCcCCcccccccccchhccCCCce
Confidence 45566774 59999999999 76 9999999 4566 7999999987654321 11111 1123345
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe-
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY- 257 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~- 257 (464)
..|+|+ |+|++|++|+.|++|||||+++++++.++. ...|.+|+|+|+ .|++|+|||+. +++...+.
T Consensus 80 ~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~ 157 (343)
T 2xzm_R 80 SDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAE 157 (343)
T ss_dssp EEEEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCT
T ss_pred EEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeec
Confidence 589997 899999999999999999999999998876 568999999984 78999999998 66665554
Q ss_pred --eCCcceeeEEEEccC---------CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 258 --HLLHRNKKVDFIEQF---------NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 258 --~~~~~~~~V~F~~~~---------~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
.+...+.+++|+|.. +..+++++.|++|+||| .+++++.++.+|...|.+++|+|||++|||++ |++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 455678999999853 14677799999999999 67888899999999999999999999999999 999
Q ss_pred EEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE--EEccCC
Q 012410 326 VAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA--KINATN 401 (464)
Q Consensus 326 IklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~--tl~gh~ 401 (464)
|+|||+ + +.+...+. |... |++++|+||+++|++++ |++|+|||+.+++++. ++..+.
T Consensus 237 v~iwd~~~~~~~~~~~~-~~~~-----v~~v~~sp~~~~la~~~------------d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFD-AGST-----INQIAFNPKLQWVAVGT------------DQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp EEEEESSCCSSCSEEEE-CSSC-----EEEEEECSSSCEEEEEE------------SSCEEEEESSSCCSCSEEECCCCS
T ss_pred EEEEECCCCcccceeec-CCCc-----EEEEEECCCCCEEEEEC------------CCCEEEEEeCCCCCCceEEeecCc
Confidence 999999 5 55666663 3333 89999999999998765 8899999999988765 554221
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
. .... ........|++|+|+|||+.||+|+.||+|++|+
T Consensus 299 ~---~~~~--------------------~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 299 I---TKAE--------------------GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp G---GGBT--------------------TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred c---hhhh--------------------hhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 0 0000 0000112799999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=366.97 Aligned_cols=269 Identities=10% Similarity=0.159 Sum_probs=241.4
Q ss_pred ccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 88 ~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
+.+|..+.+. +++|++++.||.+++||..+|+.+..+. +|.+.|.+|+|+|+|+.|+++ +.| ++++|
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sg----s~D------~~i~i 176 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASC----SAD------MTIKL 176 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEE----ETT------SCCCE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEE----eCC------CeEEE
Confidence 3567777776 8899999999999999999999999995 588899999999999999994 456 79999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC------
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------ 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------ 237 (464)
||+.++++...+..|. ..+.+|+|+ |+|+.|++|+.|++|++||+.+++++.++. ...|..++|+|+
T Consensus 177 wd~~~~~~~~~~~~h~----~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHD----HNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp EETTSSCEEECCCCCS----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCceeEEEcCCC----CCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9999988866555544 334589997 899999999999999999999999998886 567999999873
Q ss_pred --CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-------------------CCeEEEEeCCCeEEEEECCCCcEE
Q 012410 238 --SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------------NEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-------------------~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
.|++|+|||+.++++..++..|.+.+.+++|+|.. +..+++++.|++|+|||+++++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78999999999999999999877899999998842 346777999999999999999999
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
.++.+|...|.+++|+|+|++|+|++ |++|+|||+ +++++.++.+|... |++++|+|++.+|||||.
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~sgs~------ 400 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV------ 400 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET------
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCCCCEEEEEeC------
Confidence 99999999999999999999999999 999999999 69999999999988 899999999999999997
Q ss_pred cccCCCCeEEEEeC
Q 012410 375 WMEGSAGSINVSSI 388 (464)
Q Consensus 375 ~~~s~DgtIklWdi 388 (464)
||+|||||+
T Consensus 401 -----D~~i~vW~~ 409 (410)
T 1vyh_C 401 -----DQTVKVWEC 409 (410)
T ss_dssp -----TSEEEEEC-
T ss_pred -----CCcEEEEeC
Confidence 999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=349.18 Aligned_cols=227 Identities=13% Similarity=0.189 Sum_probs=205.0
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
..+.+|+|+ |||++|++|+.|++|||||++++++++++. ...|.+++|+| +.|++|+|||+++|+++.+
T Consensus 14 ~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 14 DRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 445599997 899999999999999999999999998876 56799999987 4789999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~- 331 (464)
+.+|...+.+|+|+|+ +..+++++.|++|+|||++++ .+.+++.+|...|.+++|+| ++++|||++ |++|+|||+
T Consensus 93 ~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp EECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 9988789999999994 667888999999999999998 56678999999999999999 789999999 999999999
Q ss_pred CCceEEEecc-CCCCcCCCCeeEEEECC--CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 332 RGELVTSFED-HLLWHPDCNTNNIYITS--DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 332 ~Ge~l~tl~g-H~~~~~~~~v~svafSp--Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
++++..++.. |... |+.+.|+| |+++||||+. |++|+|||+.+++|+.++++|..
T Consensus 172 ~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~s~-----------D~~i~iWd~~~~~~~~~~~~h~~------ 229 (304)
T 2ynn_A 172 QSTPNFTLTTGQERG-----VNYVDYYPLPDKPYMITASD-----------DLTIKIWDYQTKSCVATLEGHMS------ 229 (304)
T ss_dssp CSSCSEEEECCCTTC-----EEEEEECCSTTCCEEEEEET-----------TSEEEEEETTTTEEEEEEECCSS------
T ss_pred CCCccceeccCCcCc-----EEEEEEEEcCCCCEEEEEcC-----------CCeEEEEeCCCCccceeeCCCCC------
Confidence 5777666654 4444 78899987 8889999997 99999999999999999999987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|+++.||||+.||+|+|||.
T Consensus 230 ----------------------------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 230 ----------------------------NVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp ----------------------------CEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ----------------------------CEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=406.95 Aligned_cols=337 Identities=11% Similarity=0.107 Sum_probs=273.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |++||+++.+|.+++|+..+++.+..+ .|...|++|+|+| |+.|+++| .| ++++||
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s----~D------~~v~lW 84 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVIN----AK------DTVYVL 84 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEE----TT------CEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEE----Cc------CeEEEE
Confidence 456667666 899999999999999998777776665 3678899999999 88898844 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE-EEe------------cCCCEeEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSI------------SDKHVQEIK 233 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l-~tl------------~~~~V~~Va 233 (464)
|+.+|++...+. +-..+.+|+|+ |+|++|++|+.|++|+|||+.++++. +.+ +...|.+|+
T Consensus 85 d~~~~~~~~~~~-----~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 85 SLYSQKVLTTVF-----VPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp ETTTCSEEEEEE-----CSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred ECCCCcEEEEEc-----CCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 999998754332 22445689997 99999999999999999999999875 222 246799999
Q ss_pred EeCC---------CceeEEEEEcCCCcEEEEEeeC------------------CcceeeEEEEccCCCeEEEEeCCCeEE
Q 012410 234 IRSS---------SHVPLKILSIEDGTVLKVFYHL------------------LHRNKKVDFIEQFNEKLLVKQENENLQ 286 (464)
Q Consensus 234 fs~s---------~d~tIklWdi~tG~~l~tl~~~------------------~~~~~~V~F~~~~~~~lla~s~D~tIk 286 (464)
|+|+ .|++| |||++++++++++.++ ...+.+|+|+|+ +..|++++.|++|+
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLV 236 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECCCeEE
Confidence 9983 78999 9999999999999854 356899999994 67788899999999
Q ss_pred EEECCCCcEEEE--cc---cC-------------CCc-------------------------------------------
Q 012410 287 ILDVRNAELMEV--SR---TE-------------FMT------------------------------------------- 305 (464)
Q Consensus 287 IWDv~tg~~l~~--l~---gh-------------~~~------------------------------------------- 305 (464)
|||+++|+++.. +. +| ...
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~ 316 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRY 316 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCG
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCc
Confidence 999988877542 10 00 000
Q ss_pred --------------------------------------------------------------------------------
Q 012410 306 -------------------------------------------------------------------------------- 305 (464)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (464)
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~ 396 (902)
T 2oaj_A 317 SITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQN 396 (902)
T ss_dssp GGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGG
T ss_pred cccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCc
Confidence
Q ss_pred -------eE----------------------------------EEEEcCCCcEEEEEe-CCeEEEEeC-CCceE--EE--
Q 012410 306 -------PS----------------------------------AFIFLYENQLFLTFR-NRTVAVWNF-RGELV--TS-- 338 (464)
Q Consensus 306 -------v~----------------------------------sv~FspdgqllaS~s-D~TIklWd~-~Ge~l--~t-- 338 (464)
|+ +++|+|||++|||++ |+||||||+ +|++. ..
T Consensus 397 l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~ 476 (902)
T 2oaj_A 397 LSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE 476 (902)
T ss_dssp GTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE
T ss_pred ccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE
Confidence 01 123467888999999 999999999 46432 11
Q ss_pred --ec-----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--------------------
Q 012410 339 --FE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-------------------- 391 (464)
Q Consensus 339 --l~-----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------------------- 391 (464)
+. +|..+ |++|+|||||++||+|+. ||+|||||+.++
T Consensus 477 ~~l~~~~~~~h~~~-----V~svafspdg~~LAsgs~-----------DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 540 (902)
T 2oaj_A 477 VNLSRTLNKAKELA-----VDKISFAAETLELAVSIE-----------TGDVVLFKYEVNQFYSVENRPESGDLEMNFRR 540 (902)
T ss_dssp EEHHHHTTCSSSCC-----EEEEEEETTTTEEEEEET-----------TSCEEEEEEEECCC---------------CCS
T ss_pred eechhhcCCCCCCc-----eeEEEecCCCCeEEEEec-----------CcEEEEEEecCccccCccccCCCcccceeeee
Confidence 22 88887 999999999999999997 999999999877
Q ss_pred -------------------------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc-------------
Q 012410 392 -------------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE------------- 433 (464)
Q Consensus 392 -------------------------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 433 (464)
+|+++|++|+..+....++++| .+|++..+++.++|.....
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~ 619 (902)
T 2oaj_A 541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISG 619 (902)
T ss_dssp CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCS
T ss_pred ccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcc
Confidence 5899999999877777899999 9999999999999886442
Q ss_pred -cccCEEEEEEc-----CCC---CEEEEeeCCCcEEecc
Q 012410 434 -ALEDITSLFYD-----EER---NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 -~l~~V~slafs-----pDg---~~LaSgs~DgtVrlWd 463 (464)
+...|++|+|| ||| ++|+||+.|++|++||
T Consensus 620 gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 620 AQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp SCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 22359999999 986 8999999999999998
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=365.57 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=251.5
Q ss_pred cceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC---
Q 012410 98 RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--- 171 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--- 171 (464)
|+++++.+.+|.+++|+..+++ .+..+ .|...|.+++|+|+|+.|++++ .| ++++||++.+.
T Consensus 35 g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~----~d------g~v~vw~~~~~~~~ 102 (416)
T 2pm9_A 35 GTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGAL----DN------GSLELYSTNEANNA 102 (416)
T ss_dssp SCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEE----SS------SCEEEECCSSTTSC
T ss_pred cccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEc----cC------CeEEEeeccccccc
Confidence 3444444899999999988886 44444 4778899999999999999944 45 69999999772
Q ss_pred -CCCCcccceeeccccCceEEEEeCCC-CcEEEEecCCCcEEEEeCCCCe------EEEEe-----cCCCEeEEEEeCC-
Q 012410 172 -KPDSGFALFESESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT------MLYSI-----SDKHVQEIKIRSS- 237 (464)
Q Consensus 172 -~~~~~~~l~~~~~~~~~~~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~------~l~tl-----~~~~V~~Vafs~s- 237 (464)
+....+.. +...+..++|+ |+ +++|++++.|++|+|||+.+++ ....+ +...|.+++|+|+
T Consensus 103 ~~~~~~~~~----h~~~v~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (416)
T 2pm9_A 103 INSMARFSN----HSSSVKTVKFN-AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177 (416)
T ss_dssp CCEEEECCC----SSSCCCEEEEC-SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred ccchhhccC----CccceEEEEEc-CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence 22222222 22345589997 77 9999999999999999999987 44333 3568999999874
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeC------CcceeeEEEEccCCCeEEEEeCCC---eEEEEECCCC-cEEEEc
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNA-ELMEVS 299 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~------~~~~~~V~F~~~~~~~lla~s~D~---tIkIWDv~tg-~~l~~l 299 (464)
.|++|+|||+++++++.++..+ ...+.+++|+|.....+++++.|+ +|++||++++ +++..+
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~ 257 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL 257 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence 6789999999999999999854 567899999995334667788998 9999999997 678888
Q ss_pred c-cCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccc
Q 012410 300 R-TEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQ 374 (464)
Q Consensus 300 ~-gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~ 374 (464)
. +|...|.+++|+| ++++|++++ |++|+|||+ +++++.++.+|..+ |.+++|+||+ ++|++++.
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~------ 326 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPEAPDLFACASF------ 326 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCCEEECTTCTTEEEECCS------
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEEEEECCCCCCEEEEEec------
Confidence 8 9999999999999 999999999 999999999 69999999999988 7899999999 89999986
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCC--CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATN--CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
|++|+|||+.++++........ .......+...+..++...+.....+ ....-....|.+++|||||+.||+
T Consensus 327 -----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 327 -----DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp -----SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECB
T ss_pred -----CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEE
Confidence 9999999999887654432200 00000011111111111111111222 111123457889999999999999
Q ss_pred eeCCCcEEeccC
Q 012410 453 GNRHGLVHVWSN 464 (464)
Q Consensus 453 gs~DgtVrlWd~ 464 (464)
|+.|++|+||+.
T Consensus 401 ~~~d~~v~~w~~ 412 (416)
T 2pm9_A 401 TPDGKGVSITNP 412 (416)
T ss_dssp CTTSSCBCCBCC
T ss_pred eCCCCeEEEEEe
Confidence 999999999984
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=348.63 Aligned_cols=267 Identities=14% Similarity=0.144 Sum_probs=233.2
Q ss_pred cceEEEEec------cceeehhccCCeEEeeecccccEe--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 012410 89 TKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 89 s~v~~~~~a------g~~l~~l~~~g~~~~~~~~~g~~l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~ 160 (464)
..|..+.+. +++|++++.||++++|+..+++.. ..+ .+|...|.++.|+|++..+++ ++.|
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~~~~l~s----~s~D------ 101 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHTLPIAAS----SSLD------ 101 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSSSSEEEE----EETT------
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCCCCEEEE----EeCC------
Confidence 345555543 569999999999999997776643 346 568889999999999999999 4456
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s- 237 (464)
++++|||+.+|++...+..+. ..+..++|+ |||++|++|+.|++|++||+++++.++++. ...|.+++|+|+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP----VDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT----TCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS
T ss_pred CcEEEEECCCCCEEEEEeCCC----ccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC
Confidence 799999999998754333222 223379997 999999999999999999999999998876 467999999984
Q ss_pred -------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 238 -------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
.|++|+|||+++|+++.++++|...+.+++|+| ++..|++++.|++|+|||+++++++.++.+|...|.+++
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 689999999999999999998778899999999 466777789999999999999999999999999999999
Q ss_pred EcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|+|||++|+|++ |++|+|||+ +++++++|.+|... |++++|+|||++|+|++. |++|+|||.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~s~~~-----------d~~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGNGSKIVSVGD-----------DQEIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEeC
Confidence 999999999999 999999999 69999999999987 899999999999999987 999999996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=326.93 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=255.0
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++..+.++ |.++++....+.+..|........... ..|.+.|.+++|+|+|+.|++ ++ + ++++||
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~----~~-d------g~i~iw 77 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPTRHVYT----GG-K------GCVKVW 77 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSSSSEEEE----EC-B------SEEEEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecCCcEEEE----cC-C------CeEEEE
Confidence 344445444 888887777776666654444444443 358999999999999999988 44 4 699999
Q ss_pred EeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC----
Q 012410 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS---- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s---- 237 (464)
++.+++.......+.. .+...+.+++|+ |||+.|++++.|++|++||+.+++ ....+. ...|..++|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp ETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred ECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEE
Confidence 9998876544333221 123445589997 899999999999999999999988 445554 567999999884
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
.|+.|++||+++++++.++..+...+..++|+| ++..+++++.|++|++||+++++++..+. |...+.+++|+|
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~ 234 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP 234 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC
Confidence 678999999999999999997778899999999 46678888999999999999999988875 567899999999
Q ss_pred CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 314 ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|++|++++ |++|++||+.......+.+|... |.+++|+|||++|++++. ||+|++||+.+++
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGA 298 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCC
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc-----eeEEEECCCCCEEEEecC-----------CCcEEEEECCCCe
Confidence 999999999 99999999954445678899887 899999999999999987 9999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++..+ .|.. .|.+++|+|||+.|++|+.||+|++|+.
T Consensus 299 ~~~~~-~~~~----------------------------------~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 SIFQS-KESS----------------------------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEE-ECSS----------------------------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEe-cCCC----------------------------------cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 98665 4554 8999999999999999999999999983
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=359.99 Aligned_cols=324 Identities=14% Similarity=0.098 Sum_probs=245.2
Q ss_pred eeecccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEecc---CCCCCcccceeeccccC
Q 012410 112 AFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR---GKPDSGFALFESESLKW 187 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~---G~~~~~~~l~~~~~~~~ 187 (464)
.|+ .+|+.+..+..+|...|.+++|+| +|+.|+++ +.| ++++||++.+ ++.... .++..+...
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~----s~d------g~v~vwd~~~~~~~~~~~~--~~~~~h~~~ 113 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITG----SDQ------GVIKIWNLKEIIVGEVYSS--SLTYDCSST 113 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEE----ETT------SEEEEEEHHHHHTTCCCSC--SEEEECSSC
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEe----cCC------ceEEEeECcccccCcccce--eeeccCCCC
Confidence 487 889999999777999999999999 99999994 456 7999999987 663321 122123355
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCC---CCeEEEEecCCCEeEEEEe----------------C--------CCce
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKHVQEIKIR----------------S--------SSHV 240 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~---tg~~l~tl~~~~V~~Vafs----------------~--------s~d~ 240 (464)
+.+|+|+ |+|+.|++|+.|++|+|||+. +++++..+..+.|..+.|+ | +.|+
T Consensus 114 v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 114 VTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp EEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred EEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 6699997 899999999999999999994 7777766554455555543 2 3679
Q ss_pred eEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEE----EEcC
Q 012410 241 PLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAF----IFLY 313 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv----~Fsp 313 (464)
+|++||+++++++.++.. |...+.+++|+|. +..+++++.|++|+|||+++++++.++. +|...|.++ +|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 999999999999999996 6678999999984 6677789999999999999999999886 777899999 5556
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC---------------------CCCeeEEEECCCCCEEEEEecCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP---------------------DCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~---------------------~~~v~svafSpDg~~LaSgs~~~ 370 (464)
++++|++++ |++|+|||+ +|+++.+|.+|..++. ...|++++|+ ++++|++|+.
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-- 348 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-- 348 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG--
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC--
Confidence 899999999 999999999 6999999998864321 1127788999 7899999987
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc---cCCCCCCccccccccc-cccccccccccCEEEEEEcCC
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE---LGSSSTGKSKKLNKSS-YIRSTVGEALEDITSLFYDEE 446 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~V~slafspD 446 (464)
|++|++||+.+++|+.++.+|+........ ........ ...+... ........+-..|++|+|+|+
T Consensus 349 ---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 349 ---------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL-RKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp ---------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE-EECC-------------CCCEEEEEEEES
T ss_pred ---------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE-EecccccccccCcccccccceeeEeeecc
Confidence 999999999999999999998641111000 00000000 0000000 000111124558999999999
Q ss_pred --CCEEEEeeCCCcEEecc
Q 012410 447 --RNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 447 --g~~LaSgs~DgtVrlWd 463 (464)
+..|+||+.||+|+||+
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 88999999999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=392.62 Aligned_cols=354 Identities=14% Similarity=0.177 Sum_probs=298.1
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |++|++++.+|.+++|+..+++.+..+. +|...|.+++|+|+|+.|+++| .| ++++||
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~----~d------~~v~vw 684 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS----AD------KKVKIW 684 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TT------SEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEe----CC------CeEEEE
Confidence 455556665 9999999999999999999999999995 5889999999999999999944 55 699999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|+.+|++...+..+. ..+..++|+ | ++.+|++|+.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 685 d~~~~~~~~~~~~~~----~~v~~~~~~-~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHS----EQVNCCHFT-NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp ETTTCCEEEEEECCS----SCEEEEEEC-SSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred ECCCCceEEEEcCCC----CcEEEEEEe-cCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 999999865544433 445589997 6 66799999999999999999999999886 568999999984
Q ss_pred ---CceeEEEEEcCCCcEEEEEe-------------------------------------------------------eC
Q 012410 238 ---SHVPLKILSIEDGTVLKVFY-------------------------------------------------------HL 259 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~-------------------------------------------------------~~ 259 (464)
.|++|++||+.+++++.++. ++
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 67899999999888776653 33
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-------
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF------- 331 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~------- 331 (464)
...+.+++|+| ++..+++++.|++|++||+.+++++..+.+|...|.+++|+|||+.|+|++ |++|++||+
T Consensus 840 ~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 840 HSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp SSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence 45668899988 466777788999999999999999999999999999999999999999999 999999873
Q ss_pred -------------------------------------------------------------------------CCceEEE
Q 012410 332 -------------------------------------------------------------------------RGELVTS 338 (464)
Q Consensus 332 -------------------------------------------------------------------------~Ge~l~t 338 (464)
+|+++.+
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~ 998 (1249)
T 3sfz_A 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998 (1249)
T ss_dssp SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE
T ss_pred eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee
Confidence 2556677
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCC----------------------------Cccc-cccCCCCeEEEEeCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAE----------------------------PEDQ-WMEGSAGSINVSSIL 389 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~----------------------------~~~~-~~~s~DgtIklWdi~ 389 (464)
+.+|... |.+++|+|||++|++++... ++.. .+.+.|++|++||+.
T Consensus 999 ~~~h~~~-----v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 999 GVGHKKA-----VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CCCCSSC-----CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred cccCCCc-----eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 8889887 78999999999999997521 0000 345678899999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc-c-------cccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG-E-------ALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|+++.++.+|...+....+++++..+++...+++..+|+... + +-..|++++|||||+.||||+.||+|+|
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999999999998777778889999999999999888887543 2 2337999999999999999999999999
Q ss_pred ccC
Q 012410 462 WSN 464 (464)
Q Consensus 462 Wd~ 464 (464)
||.
T Consensus 1154 wd~ 1156 (1249)
T 3sfz_A 1154 WNV 1156 (1249)
T ss_dssp EES
T ss_pred EEC
Confidence 983
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=351.14 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=216.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccc----------ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRET----------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~----------g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~ 157 (464)
.|..+.+. |.+|++.+ ++++++|+... .+..+.....+...|.+|+|+|++ .|++ +++|
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~----~s~d--- 102 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILV----ASDS--- 102 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEE----EETT---
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEE----EECC---
Confidence 45566666 88888776 77888886211 111111112345669999999997 4666 3456
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR 235 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs 235 (464)
++|+|||+.+|+..........+|...+.+|+|+ |||++|++|+.|++|||||++++++++++. .+.|.+++|+
T Consensus 103 ---g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 103 ---GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp ---SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ---CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence 7999999999998654332222334556689997 899999999999999999999999999987 5789999998
Q ss_pred C---------CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC
Q 012410 236 S---------SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 236 ~---------s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
| +.|++|+|||+++|+++.++. ++.+.+.+++|+|.++..+++++.|++|+|||+++++++.++.+|..
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence 7 378999999999999999886 33456789999996555566689999999999999999999999999
Q ss_pred ceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~D 380 (464)
.|++++|+||| ++|||++ |++|+|||+ +|+++ .+.+|..+ |++|+|||||+ +|+|+|. |
T Consensus 259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-----V~~v~~sp~~~~llas~s~-----------D 321 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-----VRDATWSPLNHSLLTTVGW-----------D 321 (344)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-----EEEEEECSSSTTEEEEEET-----------T
T ss_pred CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-----EEEEEEeCCCCeEEEEEcC-----------C
Confidence 99999999998 5899999 999999999 57765 57899998 89999999986 6778886 9
Q ss_pred CeEEEEeCCCCeE
Q 012410 381 GSINVSSILTGKC 393 (464)
Q Consensus 381 gtIklWdi~tG~c 393 (464)
++|++|++.++..
T Consensus 322 ~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 322 HQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEECCC---
T ss_pred CeEEEEECCCCCC
Confidence 9999999987543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=337.99 Aligned_cols=269 Identities=9% Similarity=0.143 Sum_probs=230.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.||.+++||..+++.+..+.. |...|.+++|+|+|+.|+++ +.| ++++||
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~----~~d------~~v~iw 124 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACG----GLD------NICSIY 124 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEE----ETT------CEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEE----eCC------CeEEEE
Confidence 466666666 88999999999999999999999999954 88889999999999999994 456 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++.+++........-..+.+.+..++|+ |+++ |++++.|++|+|||+++++++.++. ...|.+++|+|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9987653211100001123444579997 6875 7889999999999999999999886 467999999884
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CCceEEEEEcCC
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSAFIFLYE 314 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~~v~sv~Fspd 314 (464)
.|++|+|||+.+|+++.++.+|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+ ...|.+++|+|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 689999999999999999998778899999999 4677888999999999999999998877643 347999999999
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|++|++++ |++|+|||+ +++++.+|.+|..+ |++++|+|||++|||||. |++|+|||
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~s~-----------D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-----EEEEEEcCCCCEEEEEcC-----------CccEEecC
Confidence 99999999 999999999 79999999999998 899999999999999997 99999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=328.90 Aligned_cols=286 Identities=13% Similarity=0.139 Sum_probs=237.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
..+ .+|...|.+++|+|+|+.|+++ +.| ++++||++.+|+....+..+. ..+.+++|+ |||++|
T Consensus 26 ~~l-~~h~~~v~~~~~s~~~~~l~~~----~~d------g~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l 89 (369)
T 3zwl_B 26 IKL-TGHERPLTQVKYNKEGDLLFSC----SKD------SSASVWYSLNGERLGTLDGHT----GTIWSIDVD-CFTKYC 89 (369)
T ss_dssp EEE-ECCSSCEEEEEECTTSCEEEEE----ESS------SCEEEEETTTCCEEEEECCCS----SCEEEEEEC-TTSSEE
T ss_pred EEE-EEeeceEEEEEEcCCCCEEEEE----eCC------CEEEEEeCCCchhhhhhhhcC----CcEEEEEEc-CCCCEE
Confidence 346 4588999999999999999994 445 699999999998765444443 344589997 899999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------Cc-----eeEEEEEcCCCcE-----------EEEE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SH-----VPLKILSIEDGTV-----------LKVF 256 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d-----~tIklWdi~tG~~-----------l~tl 256 (464)
++++.|++|+|||+.+++++.++. ...|.+++|+|+ .+ +.|++||+.+++. +..+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 999999999999999999998876 678999999984 33 8999999988753 3334
Q ss_pred eeCCc--ceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 257 YHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 257 ~~~~~--~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
..+.+ .+..++|+|+ +..+++++.|++|++||+++ ++++..+.+|...|.+++|+|++++|++++ |++|++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 43333 7899999994 56777789999999999999 889999999999999999999999999999 999999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc---cccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ---WMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~---~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
+++++.++. |... +..++|+|+|++|++++......- .......+|++||+.+++++.++.+|..
T Consensus 249 ~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------ 316 (369)
T 3zwl_B 249 TLQVLKKYE-TDCP-----LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG------ 316 (369)
T ss_dssp TCCEEEEEE-CSSC-----EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS------
T ss_pred CCceeeeec-CCCC-----ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC------
Confidence 699999998 4444 889999999999999986100000 0000011899999999999999999987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+.||||+.||+|+||+.
T Consensus 317 ----------------------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 317 ----------------------------PLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ----------------------------CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ----------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999983
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=349.38 Aligned_cols=276 Identities=9% Similarity=0.084 Sum_probs=213.6
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee---ec---cccCceEEEEeCCCCcEEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SE---SLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~---~~---~~~~~~~VaFs~pdGk~LaS 203 (464)
..|+||+|+|||+.|++.+...+. ++.+ ..++||++..+.......+.. .. +-..+.+++|+ +..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~--sGi~-N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGN--NGIP-NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSS--SSCC-EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccc--cCCC-CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence 459999999999999995522110 0000 479999997766532111111 01 11233356654 455554
Q ss_pred -----------ecCCCcEEEEeCCCCeEE----EEec-------CCCEeEEEEeCC----------CceeEEEEEcCCCc
Q 012410 204 -----------SAQDSIYKVFDLKNYTML----YSIS-------DKHVQEIKIRSS----------SHVPLKILSIEDGT 251 (464)
Q Consensus 204 -----------gs~D~tiKlWdl~tg~~l----~tl~-------~~~V~~Vafs~s----------~d~tIklWdi~tG~ 251 (464)
++.|+++|+|++.+++.. .... +..|+.|+|||+ .|++|||||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 467899999998765422 2221 245899999984 57899999999999
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CC----
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 324 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~---- 324 (464)
++.++.|+ +.|.+|+|+|+ +++++.+.|+++++|+..+++++. +..+|...|.+++|+|||+++++++ |+
T Consensus 169 ~~~~~~~~-~~V~~v~fspd--g~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 169 EKFEIETR-GEVKDLHFSTD--GKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEECS-SCCCEEEECTT--SSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred EEEEeCCC-CceEEEEEccC--CceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 99999865 78999999994 555554446677888888888764 5678989999999999999999999 87
Q ss_pred eEEEEeC-CCce----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-c
Q 012410 325 TVAVWNF-RGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-N 398 (464)
Q Consensus 325 TIklWd~-~Ge~----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~ 398 (464)
+|++||+ .++. ...+.+|... |++++|||||++||+||. |++|+|||+.+|+|++++ +
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~~Spdg~~lasgs~-----------D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKG-----ITSMDVDMKGELAVLASN-----------DNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSC-----EEEEEECTTSCEEEEEET-----------TSCEEEEETTTTEEEEEETT
T ss_pred EEeecccccceecceeeeeecCCCCC-----eEeEEECCCCCceEEEcC-----------CCEEEEEECCCCcEEEEecC
Confidence 7999998 4543 4578899988 899999999999999997 999999999999999985 7
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
||.. .|++|+|||||+.|||||.|+||||||.
T Consensus 310 gH~~----------------------------------~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSF----------------------------------AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSSS----------------------------------CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred cccC----------------------------------CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9997 9999999999999999999999999984
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=382.94 Aligned_cols=304 Identities=14% Similarity=0.052 Sum_probs=220.5
Q ss_pred ceeehhccCCeEEeeecccccEe----eEeecCCCceEEEEEEeeC------CCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 99 DIVFALAHSGVCAAFSRETNRRI----CFLNVSPDEVIRSLFYNKN------NDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l----~~ln~~~~~~i~Sv~fs~~------g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
+++++.+.+|++++|++.+++.. ..+ .+|...|++|+|+|+ +..||++| .| ++++||++
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~~~~~V~~v~wsp~~~~~~~~~~LAs~s----~D------gtvrlWd~ 242 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VHSFGEVWDLKWHEGCHAPHLVGCLSFVS----QE------GTINFLEI 242 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEE-EECCCSEEEEEECSSCCCSSSSCEEEEEE----TT------SCEEEEEC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEE-EecCCcEEEEEECCCCCCCCCCceEEEEe----cC------CeEEEEEc
Confidence 36777889999999998887753 234 346677999999997 57899854 55 79999999
Q ss_pred ccCCCCCc------ccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEe--cCCCEeEE--EEeC
Q 012410 169 RRGKPDSG------FALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSI--SDKHVQEI--KIRS 236 (464)
Q Consensus 169 ~~G~~~~~------~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl--~~~~V~~V--afs~ 236 (464)
..++.... .+.++. .+...+.+|+|+ |++ .||+|+.|++|+|||++++++ +.++ +...|.+| +|+|
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEec-CCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 88864311 111111 122445589997 554 899999999999999998754 3344 46789999 5665
Q ss_pred ---------CCceeEEEEEcCCCcEEEEEeeCCc--ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 ---------SSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 ---------s~d~tIklWdi~tG~~l~tl~~~~~--~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+.|++|||||+.++++++++.++.. .+.+|+|+|+ +..+++++.|++|||||+++++|+.++.+|...
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~ 399 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT 399 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSC
T ss_pred CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCc
Confidence 3689999999999999998885433 4789999994 567777889999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
|++|+|||+|++|||++ |++|+|||..++++++++++..|+....|++++|+|||+.+.. +..++
T Consensus 400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--------------~~~~~ 465 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--------------DSSYE 465 (524)
T ss_dssp EEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--------------CCCCC
T ss_pred eEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--------------cCCce
Confidence 99999999999999999 9999999997666555543333332223789999999996632 23455
Q ss_pred EEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC---EEEEeeCCCcEE
Q 012410 385 VSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN---EIYTGNRHGLVH 460 (464)
Q Consensus 385 lWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~---~LaSgs~DgtVr 460 (464)
+|+.. +|+|+.+|.+|.. .|++|+||||++ .||+|+.||+||
T Consensus 466 ~~~~~~~g~~~~~l~gh~~----------------------------------~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGI----------------------------------NITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp CCC-------------CCC----------------------------------SCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred ecccccCCcceeeecCCCc----------------------------------eEEEEECCCCCCccHHHHhhccCceEE
Confidence 66543 7999999999987 899999999965 999999999999
Q ss_pred eccC
Q 012410 461 VWSN 464 (464)
Q Consensus 461 lWd~ 464 (464)
||+.
T Consensus 512 lw~l 515 (524)
T 2j04_B 512 LEYL 515 (524)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=352.41 Aligned_cols=311 Identities=12% Similarity=0.115 Sum_probs=257.0
Q ss_pred cceEEEEec--cc-eeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeC-CCEEEEEEeecCCCCccccee
Q 012410 89 TKVIEIVAA--RD-IVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKN-NDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 89 s~v~~~~~a--g~-~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ 161 (464)
..|..+.+. ++ ++++.+.+|.+++|+..+++.+..+. .|.. .|.++.|+|+ |+.|++++ .+ +
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~----~d------g 229 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVG----SD------R 229 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEE----TT------C
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEe----CC------C
Confidence 455666666 44 89999999999999999999999995 4777 8999999999 99999844 45 6
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC------CCEeEEEEe
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQEIKIR 235 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~------~~V~~Vafs 235 (464)
++++|++.+|++...+......+...+..++|+ +|++|++++.|++|++||+.+++++.++.. ..+..+.|+
T Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred eEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 999999999987644310000122445589996 999999999999999999999999988763 457777774
Q ss_pred C-------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--------------------------------C----
Q 012410 236 S-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--------------------------------F---- 272 (464)
Q Consensus 236 ~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--------------------------------~---- 272 (464)
. +.|+.|++||+.+++++.++.+|...+.+++| |+ .
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l 386 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 386 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence 3 36788999999888888888755444444444 21 0
Q ss_pred ---------------------------------------------------------------------CCeEEEEeC-C
Q 012410 273 ---------------------------------------------------------------------NEKLLVKQE-N 282 (464)
Q Consensus 273 ---------------------------------------------------------------------~~~lla~s~-D 282 (464)
+..+++++. |
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 466 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 466 (615)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCC
Confidence 233444555 7
Q ss_pred CeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECC
Q 012410 283 ENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITS 358 (464)
Q Consensus 283 ~tIkIWDv~tg~~l-~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSp 358 (464)
++|++||+.++++. ..+.+|...|.+++|+|||++|++++ |++|+|||+ +|+++.++.+ |... |++++|+|
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~-----v~~~~~sp 541 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-----INAISWKP 541 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-----EEEEEECC
T ss_pred CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-----eeEEEEcC
Confidence 88888888777766 77889999999999999999999999 999999999 7999999999 9887 89999999
Q ss_pred ----------CCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 359 ----------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 359 ----------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
||++||+++. ||+|+|||+.++ +++.++.+|..
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~h~~------------------------- 585 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD------------------------- 585 (615)
T ss_dssp CC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT-------------------------
T ss_pred ccccccccccCCCEEEEEcC-----------CCcEEEEECCCCceechhhhcCcc-------------------------
Confidence 9999999987 999999999998 89999999986
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+ |+||+.||+|++|+.
T Consensus 586 ---------~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 ---------GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp ---------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ---------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 899999999999 999999999999983
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=346.17 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=216.4
Q ss_pred ceEEEEec--cceeehhcc------CCeEEeeecccccEeeE---eecCCCceEEEEEEeeCCCEEEEEEeecCCCCccc
Q 012410 90 KVIEIVAA--RDIVFALAH------SGVCAAFSRETNRRICF---LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~------~g~~~~~~~~~g~~l~~---ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L 158 (464)
.|..+-++ |.+|++++. +|.+++|+..++.+... ....|...|.+|+|+|+|..|+. | .+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~-s----~d---- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-S----DS---- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEE-E----TT----
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEE-E----CC----
Confidence 46666666 999999987 67899998877764332 22457778999999999975543 2 34
Q ss_pred ceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC
Q 012410 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS 236 (464)
Q Consensus 159 ~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~ 236 (464)
++|+|||+.+|+.......-..++...+.+|+|+ |||++|++|+.|++|+|||+++++++.++. ...|.+|+|+|
T Consensus 115 --g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 115 --GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp --SCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred --CEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 5999999999987544332222233455689997 899999999999999999999999999887 56899999987
Q ss_pred C---------CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 S---------SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 s---------~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+ .|++|+|||+++|+++..+.. +...+.+|+|+|+.+..+++++.|++|+|||++++++++++.+|...
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence 3 678999999999999887763 33457999999964445666889999999999999999999999999
Q ss_pred eEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCC
Q 012410 306 PSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|.+++|+|++ ++|||++ |++|+|||+ +|++++++ +|..+ |++|+||| |+++|||+|. ||
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-----V~~vafsP~d~~~l~s~s~-----------Dg 334 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-----VTGVAWSPLDHSKFTTVGW-----------DH 334 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-----EEEEEECSSSTTEEEEEET-----------TS
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-----EEEEEEeCCCCCEEEEEcC-----------CC
Confidence 9999999997 5799999 999999999 69888766 89988 89999999 8999999987 99
Q ss_pred eEEEEeCCCC
Q 012410 382 SINVSSILTG 391 (464)
Q Consensus 382 tIklWdi~tG 391 (464)
+|+|||+.+.
T Consensus 335 ~v~iW~~~~~ 344 (357)
T 4g56_B 335 KVLHHHLPSE 344 (357)
T ss_dssp CEEEEECC--
T ss_pred eEEEEECCCC
Confidence 9999999653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=339.14 Aligned_cols=295 Identities=13% Similarity=0.092 Sum_probs=232.6
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
.+.+.+..+ .+|...|.++.|+|+| +.|++++ .| ++++||++.+++....+... .+...+.+++|+
T Consensus 61 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~----~d------g~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~ 127 (383)
T 3ei3_B 61 KSYKLHRTA-SPFDRRVTSLEWHPTHPTTVAVGS----KG------GDIILWDYDVQNKTSFIQGM--GPGDAITGMKFN 127 (383)
T ss_dssp TTCEEEEEE-CCCSSCEEEEEECSSCTTEEEEEE----BT------SCEEEEETTSTTCEEEECCC--STTCBEEEEEEE
T ss_pred cccceEEec-cCCCCCEEEEEECCCCCCEEEEEc----CC------CeEEEEeCCCcccceeeecC--CcCCceeEEEeC
Confidence 344455566 4588889999999999 8999844 45 69999999988875333221 123445589998
Q ss_pred CC-CCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 195 DV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 195 ~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
| ++++|++++.|++|+|||+.+ .++..+. ...|.+++|+|+ .|++|++||+ +|+++.++..|.
T Consensus 128 -~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 128 -QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp -TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred -CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 7 889999999999999999986 5555554 256999999984 6799999999 699999999777
Q ss_pred cceeeEEEEccCCC-eEEEEeCCCeEEEEECCC----CcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-C
Q 012410 261 HRNKKVDFIEQFNE-KLLVKQENENLQILDVRN----AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 261 ~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~t----g~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~ 332 (464)
..+.+|+|+|. +. .+++++.|++|+|||+++ ++++..+ +|...|.+++|+| +|++|++++ |++|+|||+ +
T Consensus 205 ~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 205 AKVTHAEFNPR-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SCEEEEEECSS-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 89999999995 44 677789999999999998 7888887 6889999999999 999999999 999999999 6
Q ss_pred CceEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 333 GELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~--~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
++++.++.+|...... ..+. +.|+|++..++.+.. |+.+.+++.|++|+|||+.+|+++.++.+|...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s--~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~------- 352 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRY--PDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAA------- 352 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECB--CCTTTCTTCCCCEEEEETTTCCEEEEECBTTBC-------
T ss_pred CccccccccccccccccccceE-EeccCCCCceEEEec--CCcccccCCCCeEEEEecCCCceeeeecCCCCC-------
Confidence 9999999988643110 0122 355555555554332 222224456999999999999999999986420
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..|..++|+|||+.||+|+ |++|+|||.
T Consensus 353 -------------------------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 353 -------------------------GIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp -------------------------SCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred -------------------------ceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 1567789999999999998 999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=333.87 Aligned_cols=280 Identities=11% Similarity=0.157 Sum_probs=235.7
Q ss_pred eEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-cccCceEEEEeCCC
Q 012410 122 CFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVN 197 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~~~~~VaFs~pd 197 (464)
..+..+|...|.+++|+|+ |+.++.++ ++++ .++||++.+++....+..+... +...+.+++|+ |+
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~--~~~~-------~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 80 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFAT--VGSN-------RVTLYECHSQGEIRLLQSYVDADADENFYTCAWT-YD 80 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEE--EETT-------EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-EC
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEE--CCCC-------EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-cC
Confidence 3555679999999999984 55444433 4444 8999999988876544444321 22334589998 78
Q ss_pred ----CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC-C--------CceeEEEEEcCCCcEEEEE---eeC
Q 012410 198 ----GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS-S--------SHVPLKILSIEDGTVLKVF---YHL 259 (464)
Q Consensus 198 ----Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~-s--------~d~tIklWdi~tG~~l~tl---~~~ 259 (464)
|++|++|+.|++|+|||+.+++++.++. ...|.+++|+| + .|++|+|||+++|+++..+ ..+
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 7899999999999999999999998886 57899999988 3 6889999999999999998 556
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----------------------------CCCceEEEEE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----------------------------EFMTPSAFIF 311 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----------------------------h~~~v~sv~F 311 (464)
...+.+++|+| ++..+++++.|++|++||+++++++..+.. |...|.+++|
T Consensus 161 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 68899999999 467888899999999999999987655544 9999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCce--------------EEEeccCCCCcCCCCeeEEEECCC--CCEEEEEecCCCcc
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGEL--------------VTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKAEPED 373 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~--------------l~tl~gH~~~~~~~~v~svafSpD--g~~LaSgs~~~~~~ 373 (464)
+ +++|++++ |++|++||+ ++++ +.++.+|... |+.++|+|| |++||+|+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~l~~~~~----- 307 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD-----IWYMRFSMDFWQKMLALGNQ----- 307 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC-----SSCCCCEECTTSSEEEEECT-----
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc-----EEEEEEcCCCCCcEEEEEec-----
Confidence 9 77999999 999999998 5644 8999999987 788999999 999999986
Q ss_pred ccccCCCCeEEEEeCCCCeE----EEEEccCC--CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 012410 374 QWMEGSAGSINVSSILTGKC----LAKINATN--CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 447 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~c----l~tl~gh~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg 447 (464)
||+|+|||+.++++ +.++.+|. . .|++++|+|||
T Consensus 308 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~ 347 (366)
T 3k26_A 308 ------VGKLYVWDLEVEDPHKAKCTTLTHHKCGA----------------------------------AIRQTSFSRDS 347 (366)
T ss_dssp ------TSCEEEEECCSSSGGGCEEEEECCTTCCS----------------------------------CEEEEEECTTS
T ss_pred ------CCcEEEEECCCCCCccccceEEcccccCC----------------------------------ceEEEEeCCCC
Confidence 99999999999874 44888883 3 89999999999
Q ss_pred CEEEEeeCCCcEEeccC
Q 012410 448 NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 448 ~~LaSgs~DgtVrlWd~ 464 (464)
+.|++|+.||+|+|||.
T Consensus 348 ~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 348 SILIAVCDDASIWRWDR 364 (366)
T ss_dssp SEEEEEETTSEEEEEEC
T ss_pred CeEEEEeCCCEEEEEEe
Confidence 99999999999999984
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=316.18 Aligned_cols=275 Identities=13% Similarity=0.182 Sum_probs=236.8
Q ss_pred ccc-cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe
Q 012410 116 ETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 116 ~~g-~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
.++ +.+..+ .+|...|.+++| |+|+.|+++| .| ++++||++.+++....+..+ ...+.+++|+
T Consensus 5 ~~~~~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~----~d------g~v~vw~~~~~~~~~~~~~~----~~~v~~~~~~ 68 (313)
T 3odt_A 5 FTGYQLSATL-KGHDQDVRDVVA-VDDSKVASVS----RD------GTVRLWSKDDQWLGTVVYTG----QGFLNSVCYD 68 (313)
T ss_dssp CCCCEEEEEE-CCCSSCEEEEEE-EETTEEEEEE----TT------SEEEEEEESSSEEEEEEEEC----SSCEEEEEEE
T ss_pred cccHHHHHHh-hCCCCCcEEEEe-cCCCEEEEEE----cC------CcEEEEECCCCEEEEEeecC----CccEEEEEEC
Confidence 444 566777 559999999999 9999999944 55 69999999888765333322 2445589998
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCC---eEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg---~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
|+|++|++|+.|++|++||+.+. +++.++. ...|.+++|.+ +.|++|++|| +++.+..+..+...+
T Consensus 69 -~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 69 -SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp -TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred -CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce
Confidence 89999999999999999998764 5566665 57899999965 4889999999 789999999777899
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..++|.|.++..+++++.|++|++|| .++++..+.. |...+.+++|+|+++ |++++ |++|++||+ +++++.++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 99999997678888899999999999 6778888887 889999999999999 77888 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|... |.+++|+||| .|++++. ||+|+|||+.+++++.++.+|..
T Consensus 223 ~~~~~-----i~~~~~~~~~-~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~------------------ 267 (313)
T 3odt_A 223 GHESF-----VYCIKLLPNG-DIVSCGE-----------DRTVRIWSKENGSLKQVITLPAI------------------ 267 (313)
T ss_dssp CCSSC-----EEEEEECTTS-CEEEEET-----------TSEEEEECTTTCCEEEEEECSSS------------------
T ss_pred cCCce-----EEEEEEecCC-CEEEEec-----------CCEEEEEECCCCceeEEEeccCc------------------
Confidence 99987 8999999999 4778876 99999999999999999999986
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+ |++|+.||+|++||.
T Consensus 268 ----------------~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 268 ----------------SIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ----------------CEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ----------------eEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 899999999999 677999999999984
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=364.24 Aligned_cols=296 Identities=12% Similarity=0.167 Sum_probs=234.2
Q ss_pred EeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcE
Q 012410 123 FLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKV 200 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~ 200 (464)
.+ .+|.+.|++|+|+|++ +.|+| ++.| ++|+||++..++...+..... .+|...+.+|+|+ |||++
T Consensus 377 ~l-~~H~~~V~~v~~~~~~~~~l~s----~s~D------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~ 444 (694)
T 3dm0_A 377 TM-RAHTDMVTAIATPIDNADIIVS----ASRD------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQF 444 (694)
T ss_dssp EE-ECCSSCEEEEECCTTCCSEEEE----EETT------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSE
T ss_pred hc-ccCCceeEEEEecCCCCCEEEE----EeCC------CcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCE
Confidence 45 4699999999999975 68888 4566 799999997765432211111 1233445589997 89999
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe----eCCcceeeE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY----HLLHRNKKV 266 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~----~~~~~~~~V 266 (464)
|+||+.|++|||||+.+++++.++. ...|.+|+|+|+ .|++|+|||+. +++..++. +|...+.++
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCSSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCCCcEEEE
Confidence 9999999999999999999998875 568999999883 78999999987 45555543 344568999
Q ss_pred EEEccCC-CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 267 DFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 267 ~F~~~~~-~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|+|... ..+++++.|++|+|||+++++++.++.+|...|.+++|+|||++|+|++ |++|+|||+ +|+++.++..|.
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Confidence 9998532 4577789999999999999999999999999999999999999999999 999999999 699999988764
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
. |.+++|+||+.+|++++ |+.|+|||+.+++++.++..|....... ....+.
T Consensus 604 -~-----v~~~~~sp~~~~l~~~~------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~--------- 655 (694)
T 3dm0_A 604 -V-----IHALCFSPNRYWLCAAT------------EHGIKIWDLESKSIVEDLKVDLKAEAEK-ADNSGP--------- 655 (694)
T ss_dssp -C-----EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCCCC---------------------
T ss_pred -c-----EEEEEEcCCCcEEEEEc------------CCCEEEEECCCCCChhhhcccccccccc-cccccc---------
Confidence 2 88999999999999876 7789999999999999998765310000 000000
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
....+..-.|++|+|||||+.|+||+.||+|+|||.
T Consensus 656 -----~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 656 -----AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -----ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 000112226899999999999999999999999984
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=338.07 Aligned_cols=296 Identities=13% Similarity=0.181 Sum_probs=256.9
Q ss_pred EEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
..+.+.|++|++++.+|.+++||..+++.+..+. +|...|+++.|+ ++.|+++ +.| +++++|++.+|
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~----~~d------g~i~vwd~~~~ 189 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISG----STD------RTLKVWNAETG 189 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEE----ETT------SCEEEEETTTT
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEE----eCC------CeEEEEECCcC
Confidence 4455569999999999999999999999999995 588899999998 5788884 455 79999999999
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEE
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLK 243 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIk 243 (464)
++...+..+. ..+.+++|+ ++.|++|+.|++|++||+.+++++.++. ...|.+++|.+ +.|++|+
T Consensus 190 ~~~~~~~~h~----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 190 ECIHTLYGHT----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 262 (445)
T ss_dssp EEEEEECCCS----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred cEEEEECCCC----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEE
Confidence 8765444443 233478885 5689999999999999999999998876 56799999954 4789999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+||+++++++.++.++...+.+++| ++..+++++.|++|++||+++++++.++.+|...+.++.+ ++++|++++
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 337 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA 337 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEET
T ss_pred EEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeC
Confidence 9999999999999977788899998 4578888999999999999999999999999988887766 577999999
Q ss_pred CCeEEEEeC-CCceEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-
Q 012410 323 NRTVAVWNF-RGELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI- 397 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl- 397 (464)
|++|++||+ +|+++.++.+ |... |.+++|+ +++|++|+. ||+|+|||+.+|++++++
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~ 399 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQFN--KNFVITSSD-----------DGTVKLWDLKTGEFIRNLV 399 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCCCC-----EEEEEEC--CCEEEEEeC-----------CCeEEEEECCCCceeeeee
Confidence 999999999 7999999998 6655 8889985 689999987 999999999999999999
Q ss_pred ----ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc----EEeccC
Q 012410 398 ----NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 464 (464)
Q Consensus 398 ----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt----VrlWd~ 464 (464)
.+|.. .|++++|+|+|..||+|+.||+ |.|||.
T Consensus 400 ~~~~~~~~~----------------------------------~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 400 TLESGGSGG----------------------------------VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp ECTTGGGTC----------------------------------EEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred ccccCCCCc----------------------------------eEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 34544 8999999999999999999998 999983
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=333.32 Aligned_cols=269 Identities=12% Similarity=0.167 Sum_probs=231.1
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
+|..+-+. |++|++++.||++++||..+++....+.. |...|.+++|+|+|..|++ ++.| .++++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~las----g~~d------~~i~v~~ 134 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIAC----GGLD------NKCSVYP 134 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEE----ESTT------SEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEE----eeCC------CCEEEEE
Confidence 45556555 88999999999999999999999999955 7888999999999999999 5566 7999999
Q ss_pred eccCCCCCccc-cee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC------
Q 012410 168 IRRGKPDSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------ 237 (464)
Q Consensus 168 i~~G~~~~~~~-l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------ 237 (464)
+..++...... ... ..+...+..++|+ |+++.|++|+.|++|||||+++++++.++. ...|..++|+|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 87654322111 111 1133445589997 899999999999999999999999998886 467999999762
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC--CceEEEEE
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIF 311 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~--~~v~sv~F 311 (464)
.|++|++||+.+|++++++..|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+. ..+.+++|
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 678999999999999999997778999999999 46778889999999999999999888776543 47889999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+|+|++|++++ |++|+|||+ +|+++.+|.+|..+ |++++|||||++|||||. |++|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-----v~~l~~spdg~~l~sgs~-----------D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-----VSTLRVSPDGTAFCSGSW-----------DHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-----EEEEEECCCCCEEEEEcC-----------CCCEEecC
Confidence 99999999999 999999999 79999999999998 899999999999999997 99999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=342.01 Aligned_cols=276 Identities=11% Similarity=0.165 Sum_probs=231.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.||++++||..+++.+..+.. |...|.+++|+|+|+.|++ ++.| .+++||
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las----~~~d------~~v~iw 135 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVAC----GGLD------SACSIF 135 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEE----CCSS------SCCEEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEE----eeCC------CcEEEE
Confidence 456666665 89999999999999999999999999954 8888999999999999999 6667 799999
Q ss_pred EeccCCCCCc-cccee--eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-------CCCEeEEEEeC
Q 012410 167 YIRRGKPDSG-FALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIKIRS 236 (464)
Q Consensus 167 ~i~~G~~~~~-~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-------~~~V~~Vafs~ 236 (464)
++.++....+ .+... ..+.+.+.+++|++.++..|++|+.|++|||||+.+++++.++. ...|.+++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 9976442111 11110 11234445789984446679999999999999999999998772 45799999965
Q ss_pred ---------CCceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC--
Q 012410 237 ---------SSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-- 304 (464)
Q Consensus 237 ---------s~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~-- 304 (464)
+.|++|+|||+. ++++++++.+|...+.+|+|+| ++..+++++.|++|+|||++++++++++..|..
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 378999999997 6788999998778999999999 467788899999999999999999998876533
Q ss_pred -----ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 305 -----TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 305 -----~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl----~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
.|.+++|+|+|++|++++ |++|+|||. .++++.++ .+|... |++++|+|||++|||||.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~----- 364 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGSW----- 364 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-----CCEEEECSSSSEEEEECT-----
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-----eEEEEECCCCCEEEEeeC-----
Confidence 488999999999999999 999999999 69999988 688887 889999999999999987
Q ss_pred ccccCCCCeEEEEeCCCCe
Q 012410 374 QWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~ 392 (464)
|++|+||++..++
T Consensus 365 ------D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 ------DKNLKIWAFSGHR 377 (380)
T ss_dssp ------TSCEEEEECCSSS
T ss_pred ------CCCEEEEecCCCc
Confidence 9999999986543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=317.44 Aligned_cols=268 Identities=11% Similarity=0.089 Sum_probs=219.7
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
...|+||++| .||+ +.| ++|+|||+.+|++...+.++. +..++.+|+|+ |+|++||+|+.|++|+
T Consensus 28 ~~~l~WS~~~-~lAv----g~D-------~tV~iWd~~tg~~~~~~~~~~--~~~~V~~v~~~-~~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAV----ALD-------NSVYLWSASSGDILQLLQMEQ--PGEYISSVAWI-KEGNYLAVGTSSAEVQ 92 (318)
T ss_dssp CBCEEECTTS-EEEE----EET-------TEEEEEETTTCCEEEEEECCS--TTCCEEEEEEC-TTSSEEEEEETTSEEE
T ss_pred ceEEEECCCC-EEEE----EeC-------CEEEEEECCCCCEEEEEEecC--CCCeEEEEEEC-CCCCEEEEEECCCcEE
Confidence 4568999987 6766 334 599999999999876544433 33556699997 8999999999999999
Q ss_pred EEeCCCCeEEEEecC--CCEeEEEEeC------CCceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 212 VFDLKNYTMLYSISD--KHVQEIKIRS------SSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 212 lWdl~tg~~l~tl~~--~~V~~Vafs~------s~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
|||+++++++.++.. ..+..+++.+ +.++.+++|+..++ ..+.++.+|...+..++|.+ .+..+++++.|
T Consensus 93 iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d 171 (318)
T 4ggc_A 93 LWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGND 171 (318)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecC
Confidence 999999999988874 4566666543 57889999999876 45567777778889999987 46677778999
Q ss_pred CeEEEEECCCCcE----EEEcccCCCceEEEEEcCCCcEE---EEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeE
Q 012410 283 ENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLF---LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 283 ~tIkIWDv~tg~~----l~~l~gh~~~v~sv~Fspdgqll---aS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~s 353 (464)
++|+|||++++++ +.....|...|.+++++|++..+ ++++ |++|+|||.. +++..... |... +..
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~-----v~~ 245 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-----VCS 245 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC-----EEE
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee-----eee
Confidence 9999999999874 34566778889999999877643 4566 9999999994 66666554 4443 789
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+.|+|+++.+++++. +.|++|+|||+.+|+++++|+||++
T Consensus 246 ~~~~~~~~~~~~~sg---------~~d~~i~iwd~~~~~~~~~l~gH~~------------------------------- 285 (318)
T 4ggc_A 246 ILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS------------------------------- 285 (318)
T ss_dssp EEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS-------------------------------
T ss_pred eeecccccceEEEEE---------cCCCEEEEEECCCCcEEEEEcCCCC-------------------------------
Confidence 999999999988762 3499999999999999999999997
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+.|||||.||+|||||.
T Consensus 286 ---~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 286 ---RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ---CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ---CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=330.51 Aligned_cols=290 Identities=15% Similarity=0.177 Sum_probs=236.5
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEe----ccCCC------CCc-
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI----RRGKP------DSG- 176 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i----~~G~~------~~~- 176 (464)
++.+|+.......... ..|...|.++.|+|+|+ .|++++ .| ++++||++ .+|+. ...
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKE-IVKLDNIVSSTWNPLDESILAYGE----KN------SVARLARIVETDQEGKKYWKLTIIAEL 94 (425)
T ss_dssp --------CCCEECEE-EEECSCCSEEEECSSCTTEEEEEE----TB------TEEEEEEEEEC------CEEEEEEEEE
T ss_pred ccccccchhhhhheee-eeccCceEEEEECCCCCcEEEEec----CC------ceEEEEEEecccCCccccccccccccc
Confidence 5667765444443333 33557899999999999 999844 45 69999999 88883 111
Q ss_pred ---cccee--eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Ccee
Q 012410 177 ---FALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVP 241 (464)
Q Consensus 177 ---~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~t 241 (464)
+..+. ..+...+.+++|+ |||++|++|+.|++|+||| .+++++..+. ...|.+++|+|+ .|++
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 95 RHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp ECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred cccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe
Confidence 11110 0012245589997 8999999999999999999 7888888886 568999999884 6789
Q ss_pred EEEEEcCCCcEEEEEeeCCcc---------------eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCce
Q 012410 242 LKILSIEDGTVLKVFYHLLHR---------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 306 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~---------------~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v 306 (464)
|++||+++|+++.++..+... +.+++|++. +.+++++.|+.|++||+.+++++..+.+|...|
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i 250 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250 (425)
T ss_dssp EEEEETTTTEEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence 999999999999999865455 899999985 788899999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 307 SAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
.+++|+|++++|++++ |++|++||+ +++++.++.+|... |.+++|+||| +|++++. |++|+
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~-~l~~~~~-----------d~~i~ 313 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS-----IVSASWVGDD-KVISCSM-----------DGSVR 313 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC-----EEEEEEETTT-EEEEEET-----------TSEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc-----EEEEEECCCC-EEEEEeC-----------CCcEE
Confidence 9999999999999999 999999999 69999999999887 8999999999 9999986 99999
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|||+.+++++.++.+|.. .|.+++|+|||+.||+|+.||+|++||.
T Consensus 314 i~d~~~~~~~~~~~~~~~----------------------------------~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 314 LWSLKQNTLLALSIVDGV----------------------------------PIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEETTTTEEEEEEECTTC----------------------------------CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEECCCCcEeEecccCCc----------------------------------cEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 999999999999999986 8999999999999999999999999984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=328.59 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=197.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--CCCCcccceeeccccCceEEEEeCC-CC
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDV-NG 198 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~~~~~l~~~~~~~~~~~VaFs~p-dG 198 (464)
..+ .+|.+.|++++|+|+|+.|++ ++.| ++++||++..+ ++..++..|+ +.+.+|+|++| +|
T Consensus 3 ~~~-~~h~~~V~~~~~s~~g~~las----~s~D------~~v~iw~~~~~~~~~~~~l~gH~----~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 3 VIA-NAHNEMIHDAVMDYYGKRMAT----CSSD------KTIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFG 67 (297)
T ss_dssp EEC-CSCSSCEEEEEECTTSSEEEE----EETT------SCEEEEEBCSSCBCCCEEECCCS----SCEEEEEECCGGGC
T ss_pred eec-cCCcCceEEEEECCCCCEEEE----EeCC------CEEEEEecCCCCcEEEEEEcccc----CCeEEEEecCCCcC
Confidence 344 459999999999999999999 4456 79999999643 4443333333 33458999743 49
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLL 277 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~ll 277 (464)
++|||||.|++|||||++++++ +++.++..|...+.+|+|+|.. +..|+
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRW------------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCB------------------------------CCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred CEEEEEcCCCEEEEEEcCCCce------------------------------EEEEEeecCCCceeEEEeCcCCCCcEEE
Confidence 9999999999999999887642 1122233344567788887743 45777
Q ss_pred EEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCC-------------CcEEEEEe-CCeEEEEeC-CCc----eE
Q 012410 278 VKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYE-------------NQLFLTFR-NRTVAVWNF-RGE----LV 336 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fspd-------------gqllaS~s-D~TIklWd~-~Ge----~l 336 (464)
+++.|++|+|||++++.. ...+.+|...|.+++|+|+ +++|||++ |++|+|||+ +++ ++
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~ 197 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence 799999999999998742 4577899999999999997 57999999 999999999 566 78
Q ss_pred EEeccCCCCcCCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCe--E-EEEE--ccCCCCCCccc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGK--C-LAKI--NATNCSPKVDD 408 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--c-l~tl--~gh~~~~~~~~ 408 (464)
.+|++|..+ |++|+|+|++ ++|||+|. |++|+|||+.+++ + ...+ .+|..
T Consensus 198 ~~l~~H~~~-----V~~v~~sp~~~~~~~las~s~-----------D~~v~iWd~~~~~~~~~~~~~~~~~~~~------ 255 (297)
T 2pm7_B 198 STLEGHSDW-----VRDVAWSPTVLLRSYMASVSQ-----------DRTCIIWTQDNEQGPWKKTLLKEEKFPD------ 255 (297)
T ss_dssp EEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------TSCEEEEEESSTTSCCEEEESSSSCCSS------
T ss_pred EEecCCCCc-----eEEEEECCCCCCceEEEEEEC-----------CCcEEEEEeCCCCCccceeeeecccCCC------
Confidence 899999998 8999999995 89999987 9999999997753 2 2333 34543
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++++|+|||+.||+|+.|++|+||+
T Consensus 256 ----------------------------~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 256 ----------------------------VLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp ----------------------------CEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ----------------------------cEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 899999999999999999999999997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=338.90 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=245.3
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..|+.|++.+.+|.+++|+..+++....+.. + ..+...+|+|+|+.|+++ +.+ ++++||++.++++..
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~----~~d------g~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-A-DYTAVDTAKLQMRRFILG----TTE------GDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETTTTSCS-C-CEEEEEEECSSSCEEEEE----ETT------SCEEEECTTSCEEEE
T ss_pred ecCCeEEEEEcCCcEEEEEecccceeeEEec-C-CceEEEEEecCCCEEEEE----ECC------CCEEEEeCCCcceee
Confidence 3489999999999999999988888877743 4 667777999999999994 455 699999999887654
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEE
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKIL 245 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklW 245 (464)
.+..|. ..+.+++|+ |+|++|++|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|++|
T Consensus 134 ~~~~h~----~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 134 IDQAHV----SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp ETTSSS----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccc----CccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 333333 445589997 899999999999999999999999988876 578999999984 78999999
Q ss_pred EcCCCcEEEEEee---CCcceeeEEEEcc--------------------CCCeEEEEeCCCeEEEEECCCCcEEEEc-cc
Q 012410 246 SIEDGTVLKVFYH---LLHRNKKVDFIEQ--------------------FNEKLLVKQENENLQILDVRNAELMEVS-RT 301 (464)
Q Consensus 246 di~tG~~l~tl~~---~~~~~~~V~F~~~--------------------~~~~lla~s~D~tIkIWDv~tg~~l~~l-~g 301 (464)
|+++|+++.++.. +...+.+++|.+. ++..+++++.|++|+|||+++++++..+ .+
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 9999999999984 2334455555431 3456777899999999999999987765 56
Q ss_pred CCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CCc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 302 EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 302 h~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
|...|.+++|+|+++ +|++++ |++|++||+ +++ ++.++.+|.... |+.++ +|+|++|++++.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~-~~~~~~l~s~~~--------- 354 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP----INNVY-FAAGALFVSSGF--------- 354 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC----EEEEE-EETTEEEEEETT---------
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC----ceEEE-eCCCCEEEEecC---------
Confidence 888999999999999 999999 999999999 565 488999854431 77775 468899999986
Q ss_pred CCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 378 GSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 378 s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
|++|+|||+.+++ +...+.+|.. .|.+++|+|||+
T Consensus 355 --d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~ 398 (420)
T 3vl1_A 355 --DTSIKLDIISDPESERPAIEFETPTFLVSNDD----------------------------------AVSQFCYVSDDE 398 (420)
T ss_dssp --TEEEEEEEECCTTCCSCEECTTSCEEECCSSC----------------------------------CCCEEEEECCSS
T ss_pred --CccEEEEeccCCCCCccceeccCccEEccCCc----------------------------------ceEEEEEccCCC
Confidence 9999999987742 2223334433 899999999999
Q ss_pred ---EEEEeeCCCcEEeccC
Q 012410 449 ---EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 449 ---~LaSgs~DgtVrlWd~ 464 (464)
.|++.+.+|.+++|++
T Consensus 399 ~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 399 SNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp SSCEEEEEETTTEEEEEES
T ss_pred CcceEEEEcCCceEEEEec
Confidence 7888888999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=328.30 Aligned_cols=273 Identities=8% Similarity=0.111 Sum_probs=226.9
Q ss_pred ceEEEEec---cceeehhccCCeEEeeeccc-----ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~-----g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..+.+. +++|++++.||++++|++.+ +.++..+. +|...|.+++|+|+|..|+++ +.| +
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~----s~D------~ 87 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSA----SWD------K 87 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE----ETT------S
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEE----eCC------C
Confidence 45555554 47999999999999998653 45677884 589999999999999999994 456 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--- 236 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--- 236 (464)
+++|||+.+|++...+..|. ..+.+|+|+ |+|++|++|+.|++|||||++ ++++.++. ...|..++|+|
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHK----SDVMSVDID-KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEEEEEEECCS----SCEEEEEEC-TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCeeEEEccCC----CcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence 99999999998765444444 334489997 899999999999999999996 66777775 46799999976
Q ss_pred -----------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 -----------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 -----------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+.|++|++||++++++..++.+|...+.+++|+| ++..|++++.|++|+|||+.+++++.++.+| ..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 239 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECC-SC
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-Cc
Confidence 3678999999999999999998778999999999 4667777899999999999999999999876 57
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCc---CCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~---~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|.+++|+|+|++|+++++..|++|++ .+.++..+..+.... ....+.+++|||||++||+|+. |+
T Consensus 240 v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-----------Dg 308 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-----------DN 308 (319)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-----------TS
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-----------Cc
Confidence 99999999999999999778999999 477888776542210 0112789999999999999987 99
Q ss_pred eEEEEeCCCCe
Q 012410 382 SINVSSILTGK 392 (464)
Q Consensus 382 tIklWdi~tG~ 392 (464)
+|+|||+.|++
T Consensus 309 ~i~vWd~~t~~ 319 (319)
T 3frx_A 309 VIRVWQVMTAN 319 (319)
T ss_dssp CEEEEEEEEC-
T ss_pred eEEEEEEeecC
Confidence 99999997753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=394.40 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=268.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce------
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC------ 160 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~------ 160 (464)
..+..+.+. |+++++.+.+|.+++|+..+++.+..+ .+|...|.+++|+|+|..|+++|.++.-.+|++..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~ 919 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 919 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeee
Confidence 344445554 899999999999999999999999999 45889999999999999999977544433443210
Q ss_pred ---------------------------------------------------------------eeEEEEEeccCCCCCcc
Q 012410 161 ---------------------------------------------------------------RSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 161 ---------------------------------------------------------------~ti~l~~i~~G~~~~~~ 177 (464)
+.+.+|++.+|+....+
T Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~ 999 (1249)
T 3sfz_A 920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999 (1249)
T ss_dssp SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence 23445555555443222
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED 249 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t 249 (464)
..+ ...+.+++|+ |||++|++++.|++|++||+.+++++.... ...|.+++|+|+ .|++|++||+.+
T Consensus 1000 ~~h----~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1000 VGH----KKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp CCC----SSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred ccC----CCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 222 2334489997 899999999999999999999999886443 678999999873 789999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
|+++.++.+|...+.+++|+| ++..+++++.|++|+|||+.+++++.++.+|...|.+++|+|||++||+++ |++|+|
T Consensus 1075 ~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1075 GRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp TCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred CceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999998778899999998 467788899999999999999999999999999999999999999999999 999999
Q ss_pred EeC-CCceEEEe---------ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 329 WNF-RGELVTSF---------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 329 Wd~-~Ge~l~tl---------~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
||+ +|+++.++ .+|..+ |.+++|||||++|+++ +|+|++||+.+|+++.++.
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~fs~dg~~l~s~-------------~g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHGGW-----VTDVCFSPDSKTLVSA-------------GGYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CCSC-----CCEEEECTTSSCEEEE-------------SSSEEEBCSSSCBCCCCCC
T ss_pred EECCCCceEEEeccccccccccccCce-----EEEEEECCCCCEEEEC-------------CCeEEEEECCCCceeeeee
Confidence 999 69998876 678887 8899999999999987 5899999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|.. .|++++|+|||+.|++|+.||+|++|+.
T Consensus 1216 ~~~~----------------------------------~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1216 TNGT----------------------------------NLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CSSC----------------------------------CCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ccCC----------------------------------cccEEEECCCCCEEEEecCCcEEEEEee
Confidence 9976 7899999999999999999999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=324.91 Aligned_cols=285 Identities=13% Similarity=0.117 Sum_probs=230.9
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC-
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN- 197 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd- 197 (464)
+.+..+..+|...|.++.|+|+|..+++++.....| ++++||++.+|++.. ....++...+.+++|+ |+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d------~~v~iw~~~~~~~~~---~~~~~~~~~v~~~~~~-~~~ 77 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT------GVIQLYEIQHGDLKL---LREIEKAKPIKCGTFG-ATS 77 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC------EEEEEEEECSSSEEE---EEEEEESSCEEEEECT-TCC
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC------cEEEEEeCCCCcccc---eeeecccCcEEEEEEc-CCC
Confidence 344444456999999999999998777644221125 799999999888642 2222233455589997 77
Q ss_pred --CcEEEEecCCCcEEEEeCCCCe-EEEEec--CCCEeEEEE------eC--------CCceeEEEEEcCCCc-EEEEEe
Q 012410 198 --GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKI------RS--------SSHVPLKILSIEDGT-VLKVFY 257 (464)
Q Consensus 198 --Gk~LaSgs~D~tiKlWdl~tg~-~l~tl~--~~~V~~Vaf------s~--------s~d~tIklWdi~tG~-~l~tl~ 257 (464)
|++|++|+.|++|++||+.+++ ++.++. ...|.+++| +| +.|++|++||+++++ ++.++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 7999999999999999999998 777776 567999965 34 378899999999998 788886
Q ss_pred eCCc----ceeeEEEEc---cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC---CCcEEEEEe-CCeE
Q 012410 258 HLLH----RNKKVDFIE---QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFR-NRTV 326 (464)
Q Consensus 258 ~~~~----~~~~V~F~~---~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp---dgqllaS~s-D~TI 326 (464)
.+.. .+.+++|.+ +++..+++++.|++|++||+++++++.. ..|...|.+++|+| ++++|++++ |++|
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 3322 678888533 2466777789999999999999998655 66778999999999 999999999 9999
Q ss_pred EEEeC-CCceEEEec-----cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCC--------
Q 012410 327 AVWNF-RGELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTG-------- 391 (464)
Q Consensus 327 klWd~-~Ge~l~tl~-----gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------- 391 (464)
++||+ +++++.++. +|... |.+++|+|||+ +|++++. ||+|+|||+.++
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKST-----VWQVRHLPQNRELFLTAGG-----------AGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSC-----EEEEEEETTEEEEEEEEET-----------TSEEEEEEEECCSCC--CCT
T ss_pred EEEeCcCCCcccceeeeccCCCcCC-----EEEEEECCCCCcEEEEEeC-----------CCcEEEeecCCCcccccccC
Confidence 99999 577766555 99887 89999999999 8999987 999999999764
Q ss_pred -----------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcE
Q 012410 392 -----------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLV 459 (464)
Q Consensus 392 -----------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtV 459 (464)
+++.++.+|.. .|++++|+|||+.|+ ||+.||+|
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQ----------------------------------PISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSS----------------------------------CEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCCccccccccceeeccccCCC----------------------------------CeeEEEEcCCCCeEEEEecCCCcE
Confidence 57888888876 899999999999998 89999999
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
+|||.
T Consensus 347 ~iw~~ 351 (357)
T 3i2n_A 347 RVLIV 351 (357)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99983
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=337.60 Aligned_cols=269 Identities=12% Similarity=0.119 Sum_probs=227.7
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
....|.||++| .||+ +-| ++|+|||+.+|++...+.+.. +..++.+|+|+ |||++||+|+.|++|
T Consensus 107 y~~~l~wS~~n-~lAv----gld-------~tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~fs-pdg~~lasgs~Dg~v 171 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAV----ALD-------NSVYLWSASSGDILQLLQMEQ--PGEYISSVAWI-KEGNYLAVGTSSAEV 171 (420)
T ss_dssp TCBCEEECTTS-EEEE----EET-------TEEEEEETTTCCEEEEEECCS--TTCCEEEEEEC-TTSSEEEEEETTSCE
T ss_pred cceeEEECCCC-EEEE----EeC-------CEEEEEECCCCCEEEEEEecC--CCCcEEEEEEC-CCCCEEEEEECCCeE
Confidence 35668999865 7777 333 599999999999865443333 33556799998 899999999999999
Q ss_pred EEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeEEEEeC
Q 012410 211 KVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
+|||+++++++.++. ...|.++++++ +.|+++++||..+ ...+.++.+|...+..+.|.| ++..+++++.
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~ 250 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGN 250 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeec
Confidence 999999999999887 45688888765 5889999999886 456678887778889999988 4667777899
Q ss_pred CCeEEEEECCCCc----EEEEcccCCCceEEEEEcCCC-cEEEE--Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 282 NENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN-QLFLT--FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 282 D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fspdg-qllaS--~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
|++|+|||+.+++ .+.....|...|.+++|+|++ .++++ ++ |++|+|||+ +|+++.++..|.. +.
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~------v~ 324 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ------VC 324 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC------EE
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc------ee
Confidence 9999999999887 356778899999999999865 45555 45 999999999 7999999988864 78
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++.|+|+++.|++++. +.|++|+|||+.+++++++|+||++
T Consensus 325 ~~~~~~~~~~lv~~sg---------~~d~~I~iwd~~~~~~v~~l~gH~~------------------------------ 365 (420)
T 4gga_A 325 SILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS------------------------------ 365 (420)
T ss_dssp EEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS------------------------------
T ss_pred eeeecCCCCeEEEEEe---------cCCCEEEEEECCCCcEEEEEcCCCC------------------------------
Confidence 9999999999998762 2499999999999999999999997
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|||||++|||||.|++|||||.
T Consensus 366 ----~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 366 ----RVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ----CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ----CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=346.86 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=229.4
Q ss_pred cCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe
Q 012410 126 VSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 204 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg 204 (464)
..|+..|.+|+|+| ++..||+ |+.| ++|+|||+.+++......+. +|.+.+.+|+|++.||.+|+||
T Consensus 116 ~~~~~~V~~l~~~P~~~~~las----Gs~d------g~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAV----GSKG------GDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEE----EETT------SCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEE----EeCC------CEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEEEE
Confidence 34788899999999 5668888 5566 79999999888764322211 1334455899984489999999
Q ss_pred cCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC
Q 012410 205 AQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
|.|++|||||++++.+..... ...+.+++|+| +.|++|+|||++ |+++.++..|...|.+|+|+|..
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTC
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCC
Confidence 999999999998776544333 23578899987 478999999996 67888888777899999999954
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC
Q 012410 273 NEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 347 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~ 347 (464)
+..+++++.|++|+|||++++++.. ...+|...|.+++|+|||++|+|++ |++|+|||+ +|+++..+.+|.....
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence 3456668899999999999987554 3468999999999999999999999 999999999 6999999998876322
Q ss_pred C-CCeeEEEECCCCCEEEEEecCCCccc-cccCCCCeEEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCcccccccc
Q 012410 348 D-CNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 348 ~-~~v~svafSpDg~~LaSgs~~~~~~~-~~~s~DgtIklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
. ..+..+.|+|++.++++++..++.-. +..+.+++|+|||+.+|+++.++. +|..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~---------------------- 400 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS---------------------- 400 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC----------------------
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC----------------------
Confidence 1 11345789999999998875333322 344456899999999999999986 4554
Q ss_pred ccccccccccccCEEEE-EEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~sl-afspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++ +|||||+.||||+ |++|+|||.
T Consensus 401 ------------~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 401 ------------GISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ------------CCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred ------------cEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 67776 7999999999987 889999984
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=336.83 Aligned_cols=270 Identities=11% Similarity=0.118 Sum_probs=228.9
Q ss_pred ccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecC-----------------CCceEEEEEEeeCCCEEEEEE
Q 012410 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVS-----------------PDEVIRSLFYNKNNDSLITVS 148 (464)
Q Consensus 88 ~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~-----------------~~~~i~Sv~fs~~g~~l~svS 148 (464)
...|..+-++ |++||+.+ ++.+++|++.+|+.+..+... +...|++++|+|+|+.|++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s-- 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-- 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE--
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE--
Confidence 4456666665 88999876 689999999999999888542 1225999999999999999
Q ss_pred eecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC
Q 012410 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 227 (464)
Q Consensus 149 a~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~ 227 (464)
++.| ++++|||+.++++...+..|. ..+.+++|+ |+|+.|++|+.|++|+|||+.+++++.++. ..
T Consensus 141 --~~~d------~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 141 --GAED------RLIRIWDIENRKIVMILQGHE----QDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp --EETT------SCEEEEETTTTEEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --EcCC------CeEEEEECCCCcEEEEEccCC----CCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 4456 799999999988754444333 345589997 899999999999999999999999998876 56
Q ss_pred CEeEEEEeC-C--------CceeEEEEEcCCCcEEEEE-------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 228 HVQEIKIRS-S--------SHVPLKILSIEDGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 228 ~V~~Vafs~-s--------~d~tIklWdi~tG~~l~tl-------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
.|..++|+| + .|++|+|||+++|+++..+ .+|...+.+|+|+| ++..|++++.|++|+|||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 899999987 2 6889999999999999888 34567889999998 46778889999999999998
Q ss_pred C------------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 292 N------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 292 t------------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
+ +.|..++.+|...|.+++|+|++++|+|++ |++|++||. +|+++.+|.+|... |.+++|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~-----v~~v~~~ 361 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VISVAVA 361 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEEC
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC-----EEEEEec
Confidence 6 457788999999999999999999999999 999999999 69999999999988 8999998
Q ss_pred C------CCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 358 S------DQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 358 p------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
| ++++|||||. ||+|||||+.+
T Consensus 362 ~~~~~~p~~~~l~sgs~-----------Dg~i~iW~~~~ 389 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSG-----------DCKARIWKYKK 389 (393)
T ss_dssp SSCTTCTTCEEEEEEET-----------TSEEEEEEEEE
T ss_pred CCcCcCCCCCEEEEECC-----------CCcEEECcccc
Confidence 6 7999999987 99999999743
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=328.77 Aligned_cols=291 Identities=9% Similarity=0.013 Sum_probs=235.6
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-e-ccccCceEEEEeCCC---
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-S-ESLKWPGFVEFDDVN--- 197 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~-~~~~~~~~VaFs~pd--- 197 (464)
.+ .+|...|.+|+|+| +.|+++ +.| ++++||++.+++....+.... . .+...+..++|+ |+
T Consensus 11 ~~-~~h~~~i~~~~~~~--~~l~s~----~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~ 76 (397)
T 1sq9_A 11 AG-KAHDADIFSVSACN--SFTVSC----SGD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QAIER 76 (397)
T ss_dssp ES-SCSSSCEEEEEECS--SEEEEE----ETT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EEEET
T ss_pred hh-hhhhcCeEEEEecC--CeEEEE----cCC------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-ccccc
Confidence 44 56999999999999 788884 455 799999999988322211111 1 122344589998 78
Q ss_pred -C---cEEEEecCCCcEEEEeCCCCeE-----EEEec-------CCCEeEEEEe----CC---------CceeEEEEEcC
Q 012410 198 -G---KVLTYSAQDSIYKVFDLKNYTM-----LYSIS-------DKHVQEIKIR----SS---------SHVPLKILSIE 248 (464)
Q Consensus 198 -G---k~LaSgs~D~tiKlWdl~tg~~-----l~tl~-------~~~V~~Vafs----~s---------~d~tIklWdi~ 248 (464)
| ++|++++.|++|++||+.++++ +..+. ...|.+++|+ |+ .|+.|++||++
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 9 9999999999999999999987 77765 2679999999 73 56789999999
Q ss_pred C------CcEEE-----EEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc---C---CC
Q 012410 249 D------GTVLK-----VFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---E---FM 304 (464)
Q Consensus 249 t------G~~l~-----tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h---~~ 304 (464)
+ ++++. ++.. +...+.+++|+|+ + .+++++.|++|+|||+++++++..+.+ | ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 9 88887 7743 5567899999994 4 777789999999999999999999999 9 89
Q ss_pred ceEEEEEcCCCcEEEEEe-C---CeEEEEeC-CCceEEEecc-------------CCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 305 TPSAFIFLYENQLFLTFR-N---RTVAVWNF-RGELVTSFED-------------HLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D---~TIklWd~-~Ge~l~tl~g-------------H~~~~~~~~v~svafSpDg~~LaSg 366 (464)
.|.+++|+|++++|++++ | ++|++||+ +++++.++.+ |... |.+++|+|||++|+++
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSA 309 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc-----EEEEEECCCCCEEEEE
Confidence 999999999999999999 9 99999999 6999999999 9887 8999999999999999
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEEc------cCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 367 CKAEPEDQWMEGSAGSINVSSILTGKCLAKIN------ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~------gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
+. |++|+|||+.+++++.++. +|... .+.|.. . ....+-..|++
T Consensus 310 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~g~~----------~---~~~~~~~~v~~ 359 (397)
T 1sq9_A 310 GW-----------DGKLRFWDVKTKERITTLNMHCDDIEIEED------ILAVDE----------H---GDSLAEPGVFD 359 (397)
T ss_dssp ET-----------TSEEEEEETTTTEEEEEEECCGGGCSSGGG------CCCBCT----------T---SCBCSSCCEEE
T ss_pred eC-----------CCeEEEEEcCCCceeEEEecccCcccchhh------hhcccc----------c---cccccCCceeE
Confidence 87 9999999999999999999 77110 000000 0 00000128999
Q ss_pred EEEcCCC----------CEEEEeeCCCcEEeccC
Q 012410 441 LFYDEER----------NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 441 lafspDg----------~~LaSgs~DgtVrlWd~ 464 (464)
++|+||| +.|++|+.||+|++||.
T Consensus 360 ~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 360 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 9999999 79999999999999983
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=331.78 Aligned_cols=300 Identities=13% Similarity=0.160 Sum_probs=249.3
Q ss_pred eEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc
Q 012410 91 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 91 v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
+..+.+.+++|++++.+|.+++||..+++.+..+. +|...|+++.|+|++ .|++ ++.| +++++|++.+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s----~s~d------g~i~vwd~~~ 192 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVS----GSTD------RTVRVWDIKK 192 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEE----EETT------SCEEEEETTT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEE----EeCC------CCEEEEECCC
Confidence 34555669999999999999999999999999995 588999999999998 7777 3455 7999999999
Q ss_pred CCCCCcccceeeccccCceEEEEeC-CCCcEEEEecCCCcEEEEeCCCCeE-----------------------EEEec-
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------LYSIS- 225 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~-pdGk~LaSgs~D~tiKlWdl~tg~~-----------------------l~tl~- 225 (464)
|++...+..+. ..+..++|++ ++|++|++|+.|++|++||+.+++. +.++.
T Consensus 193 ~~~~~~~~~h~----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 193 GCCTHVFEGHN----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TEEEEEECCCS----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CcEEEEECCCC----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 98765444333 3344788874 6889999999999999999998764 33343
Q ss_pred -CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 226 -DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 226 -~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
...|..+...+ +.|++|++||+.+++++.++.+|...+.+++|+| ++..+++++.|++|+|||+.+++++.+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 34566665433 5789999999999999999997778999999999 467888899999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 299 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 299 l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
+.+|...|.+++|+ ++.|++++ |++|++||+ +++....+. |... +..++|+|+|++|++|+
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~--------- 410 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNL-----SAITTFYVSDNILVSGS--------- 410 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTC-----CCEEEEEECSSEEEEEE---------
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCC-----ccEEEEEeCCCEEEEec---------
Confidence 99999999999997 58999999 999999999 577766663 4333 67899999999999987
Q ss_pred cCCCCeEEEEeCCCCeEEEE-EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 377 EGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 377 ~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|++|+|||+.+|+++++ +.+|.. .|++|+|+ ++..+++++.
T Consensus 411 ---dg~i~iwd~~~g~~~~~~~~~~~~----------------------------------~v~~v~~~-~~~l~~~~~~ 452 (464)
T 3v7d_B 411 ---ENQFNIYNLRSGKLVHANILKDAD----------------------------------QIWSVNFK-GKTLVAAVEK 452 (464)
T ss_dssp ---TTEEEEEETTTCCEEESCTTTTCS----------------------------------EEEEEEEE-TTEEEEEEEE
T ss_pred ---CCeEEEEECCCCcEEehhhccCCC----------------------------------cEEEEEec-CCEEEEEEEe
Confidence 89999999999999986 566664 89999998 4566667778
Q ss_pred CCcEEec
Q 012410 456 HGLVHVW 462 (464)
Q Consensus 456 DgtVrlW 462 (464)
||.+.+|
T Consensus 453 ~g~~~i~ 459 (464)
T 3v7d_B 453 DGQSFLE 459 (464)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8876655
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=337.25 Aligned_cols=276 Identities=9% Similarity=0.092 Sum_probs=232.4
Q ss_pred ceEEEEEEeeCCC-EEEEEEeec------CCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 130 EVIRSLFYNKNND-SLITVSVYA------SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 130 ~~i~Sv~fs~~g~-~l~svSa~~------sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
+.|.+++|+|+|+ .|++++..+ +.| ++++||++.+++.......+. +...+.+++|+ |||++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s-~~~~~l~ 83 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTD------SSLELWSLLAADSEKPIASLQ--VDSKFNDLDWS-HNNKIIA 83 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCC------CCCEEEESSSGGGCSCSCCCC--CSSCEEEEEEC-SSSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCC------CeEEEEEccCCCCCcEEEEEe--cCCceEEEEEC-CCCCeEE
Confidence 4588999999998 788743222 455 799999998886432111121 22445589997 8999999
Q ss_pred EecCCCcEEEEeCCC----CeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCc------EEEEE---ee
Q 012410 203 YSAQDSIYKVFDLKN----YTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGT------VLKVF---YH 258 (464)
Q Consensus 203 Sgs~D~tiKlWdl~t----g~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~------~l~tl---~~ 258 (464)
+|+.|++|+|||+.+ .+++.++. ...|.+++|+|+ .|++|+|||+++++ ....+ ..
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 999999999999998 45777776 568999999873 67899999999997 43333 45
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC------CCceEEEEEcCCC-cEEEEEe-CC---eEE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-QLFLTFR-NR---TVA 327 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh------~~~v~sv~Fspdg-qllaS~s-D~---TIk 327 (464)
+...+.+++|+|+.+..+++++.|++|+|||+++++++..+..| ...+.+++|+|++ ++|++++ |+ +|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 55788999999954567777899999999999999999998877 7889999999997 6899999 88 999
Q ss_pred EEeC-CC-ceEEEec-cCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 328 VWNF-RG-ELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~-~G-e~l~tl~-gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
+||+ ++ +++.++. +|... |.+++|+| |+++|++++. |++|+|||+.+++++.++.+|..
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~-----------dg~v~~wd~~~~~~~~~~~~~~~- 306 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKG-----ILSLDWCHQDEHLLLSSGR-----------DNTVLLWNPESAEQLSQFPARGN- 306 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSC-----EEEEEECSSCSSCEEEEES-----------SSEEEEECSSSCCEEEEEECSSS-
T ss_pred EEeCCCCCCCcEEeecCccCc-----eeEEEeCCCCCCeEEEEeC-----------CCCEEEeeCCCCccceeecCCCC-
Confidence 9999 45 7889999 99887 89999999 9999999987 99999999999999999999986
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+||+ +.|++|+.|++|+|||.
T Consensus 307 ---------------------------------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 307 ---------------------------------WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp ---------------------------------CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ---------------------------------ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 89999999999 89999999999999984
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=339.92 Aligned_cols=262 Identities=15% Similarity=0.130 Sum_probs=210.4
Q ss_pred ccCCeEEeeecccc---cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 105 AHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 105 ~~~g~~~~~~~~~g---~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
+-..++.+|++.++ ++++++++ |...|..|+|.||-.-|+-| +.|++ ..
T Consensus 60 ~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~---------------------~~~~~------~~ 111 (356)
T 2w18_A 60 ACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCV---------------------ALGNL------EI 111 (356)
T ss_dssp EESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEE---------------------EECSS------SE
T ss_pred eccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeee---------------------eeccc------cc
Confidence 33458999999999 89999977 88889999999987666553 33443 12
Q ss_pred eccccCceEEEEeCCC----CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEc-CCCcEEEEE
Q 012410 182 SESLKWPGFVEFDDVN----GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSI-EDGTVLKVF 256 (464)
Q Consensus 182 ~~~~~~~~~VaFs~pd----Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi-~tG~~l~tl 256 (464)
+.+.+|+|| || |++|++++.+ ++||++.+|+++.+.. +..|++|++|++ ++|+.+.++
T Consensus 112 ----~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~----------~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 112 ----REIRALFCS-SDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG----------TLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp ----EEEEEECC-------CCEEEEEEEEE--EEEEEETTTEEEEEES----------SSTTCEEEEEEECTTSCEEEEE
T ss_pred ----cceEEEEEC-CCccccccEEEeCCCe--EEEEecCCCcEEEecc----------cCCCCcEEEEEECCCCceeeee
Confidence 233489998 89 9999998844 9999999999987732 246888999999 679999999
Q ss_pred eeCCcceeeEEEEc-cC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCC---CceEEEEEcCCCcEE------------E
Q 012410 257 YHLLHRNKKVDFIE-QF-NEKLLVKQENENLQILDVRNAELMEVSRTEF---MTPSAFIFLYENQLF------------L 319 (464)
Q Consensus 257 ~~~~~~~~~V~F~~-~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~---~~v~sv~Fspdgqll------------a 319 (464)
..+.+.+..++|+| +. ++.|++++.|+||||||+.+|+|++++.+|. ..+.+++|||||+++ +
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 98888899999998 43 4566667999999999999999999998754 367778999999987 6
Q ss_pred EEe-CCeEEEEeC-CCceEEEe-----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 320 TFR-NRTVAVWNF-RGELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 320 S~s-D~TIklWd~-~Ge~l~tl-----~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
|++ |+|||+||. +|+++.++ .||... +.+..+ +|.++|||+. |+||||||+.+|+
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-----~lsg~~--sg~~lASgS~-----------DgTIkIWDl~tGk 316 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-----FLEGDV--KDHCAAAILT-----------SGTIAIWDLLLGQ 316 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCS
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-----eEcccc--CCCEEEEEcC-----------CCcEEEEECCCCc
Confidence 788 999999999 79999887 488765 333444 4899999987 9999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEeeCCCcEEecc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+++|++|.. .|. +|+|||||++|||||.|++|||||
T Consensus 317 ~l~tL~gH~~----------------------------------~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 317 CTALLPPVSD----------------------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEEEECCC------------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEEEecCCCC----------------------------------CeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 9999999986 444 589999999999999999999998
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=326.44 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=213.1
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccc--cEeeEeecC-CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETN--RRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g--~~l~~ln~~-~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.+|..+-+.+++|++++.||++++|++.++ +.+..+... |...|++|+|+|+|+.|+++ +.| ++++|
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~----s~D------~~v~i 84 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG----SFD------STVSI 84 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE----eCC------CcEEE
Confidence 356677777889999999999999998775 456666444 99999999999999999994 456 79999
Q ss_pred EEeccCCCC-Cc-cccee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC----CCeEEEEec--CCCEeEEEEeC
Q 012410 166 EYIRRGKPD-SG-FALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS--DKHVQEIKIRS 236 (464)
Q Consensus 166 ~~i~~G~~~-~~-~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~----tg~~l~tl~--~~~V~~Vafs~ 236 (464)
|++..+... .. ..+.. ..+...+.+|+|+ |||++||+|+.|++|+|||+. .++++.++. ...|.+|+|+|
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 998643211 00 01111 1122344589997 899999999999999999994 236777776 46799999988
Q ss_pred C--------CceeEEEEEcCCC--cEEEEEeeCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCCC--------cEEE
Q 012410 237 S--------SHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNA--------ELME 297 (464)
Q Consensus 237 s--------~d~tIklWdi~tG--~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg--------~~l~ 297 (464)
+ .|++|+|||+.++ +++.++.+|...+++++|+|..++ .|++++.|++|+|||+.++ +++.
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 4 7899999999887 789999988789999999995433 5677899999999999876 6777
Q ss_pred Eccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc--eEE-EeccCCC-CcCCCCeeEEEECC--CCCEEEEEec
Q 012410 298 VSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE--LVT-SFEDHLL-WHPDCNTNNIYITS--DQDLIISYCK 368 (464)
Q Consensus 298 ~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge--~l~-tl~gH~~-~~~~~~v~svafSp--Dg~~LaSgs~ 368 (464)
++.+ |...|++++|+|++ +|||++ |++|+|||. +|+ ++. .+.+|.. . |++++|+| |+++|||||.
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~-----v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE-----INVVKWLELNGKTILATGGD 317 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC-----EEEEEEC-----CCEEEEET
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccce-----EEEEEEecCCCceEEEEecC
Confidence 7776 99999999999876 788888 999999999 574 444 4478876 5 89999999 7999999987
Q ss_pred CCCccccccCCCCeEEEEeCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~t 390 (464)
||+|+|||+.+
T Consensus 318 -----------Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 -----------DGIVNFWSLEK 328 (330)
T ss_dssp -----------TSEEEEEEC--
T ss_pred -----------CCcEEEEEecc
Confidence 99999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=327.11 Aligned_cols=276 Identities=11% Similarity=0.068 Sum_probs=220.3
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEee--EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~--~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.+..+-+. |++|++++.||++++|+..+++.++ .+..+|...|++|+|+|+|+.|+++ +.| ++++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----s~D------~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA----SFD------ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE----ECC------CcEEE
Confidence 45555555 9999999999999999988887554 3446799999999999999999994 456 79999
Q ss_pred EEeccCCC--CCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EEEEec--CCCEeEEEEeCC-
Q 012410 166 EYIRRGKP--DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKIRSS- 237 (464)
Q Consensus 166 ~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l~tl~--~~~V~~Vafs~s- 237 (464)
|++..++. ...+.. +...+.+|+|+ |+|++||+|+.|++|+|||+.++. ++..+. ...|..|+|+|+
T Consensus 88 w~~~~~~~~~~~~~~~----h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEG----HENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEECCC-EEEEEEECC----CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEccCCCeEEEEEccC----CCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99987753 222222 22345589997 899999999999999999998763 455665 467999999884
Q ss_pred -------CceeEEEEEcCCCc--EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC---------------C
Q 012410 238 -------SHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---------------A 293 (464)
Q Consensus 238 -------~d~tIklWdi~tG~--~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t---------------g 293 (464)
.|++|+|||+++++ ++.++.+|...+.+|+|+| ++..|++++.|++|+|||+.. .
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 78999999999886 5678887778999999999 467788899999999999632 2
Q ss_pred cEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc---------eEEEeccCCCCcCCCCeeEEEECCCC-
Q 012410 294 ELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQ- 360 (464)
Q Consensus 294 ~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge---------~l~tl~gH~~~~~~~~v~svafSpDg- 360 (464)
+|+.++.+ |...|++++|+|++.+||+++ |++|+||+.. +. ..+.+.+|... |++|+|+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD-----VNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC-----EEEEEECSSST
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc-----EeEeEEeCCCc
Confidence 56777776 889999999999999999999 9999999973 32 23345789887 8999999998
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 361 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 361 ~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+|||||. ||+|+||++.+++-+..+
T Consensus 317 ~~laS~s~-----------Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 317 GLLASCSD-----------DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TEEEEEET-----------TSCEEEEEECC-------
T ss_pred eEEEEcCC-----------CCcEEEEEecCCCCcccc
Confidence 59999987 999999999988865543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=324.43 Aligned_cols=303 Identities=12% Similarity=0.145 Sum_probs=245.9
Q ss_pred hhccCCeEEeeecccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 103 ~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
....++.+++|+..+++....+. +|...|.+++|+| +|+.|+++ +.| ++++||++.+++....+....
T Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~ 86 (408)
T 4a11_B 18 LRRAESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSG----GSD------GVIVLYDLENSSRQSYYTCKA 86 (408)
T ss_dssp HHHHHHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEE----ETT------SCEEEEECCCCSSSSCEEECE
T ss_pred eeeccCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEE----cCC------CeEEEEECCCCcccceEeccc
Confidence 34455678899988888888884 5999999999999 99999994 455 699999999988765433111
Q ss_pred ---------eccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------Cc
Q 012410 182 ---------SESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SH 239 (464)
Q Consensus 182 ---------~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d 239 (464)
..+...+..++|+ | ++++|++++.|++|++||+.+++++..+. ...+..++|+|. .|
T Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 87 VCSIGRDHPDVHRYSVETVQWY-PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEECTTCTTCCSSCEEEEEEC-TTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred cccccccccccCCCcEEEEEEc-cCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 0123445589998 6 88899999999999999999999998776 677899999762 56
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCc-EEEEc---------------ccC
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAE-LMEVS---------------RTE 302 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~-~l~~l---------------~gh 302 (464)
+.|++||+++++++.++..+...+.+++|+|. +.. +++++.|++|+|||+++++ ++..+ .+|
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPR-YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECCC-CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 89999999999999999977788999999995 454 6678999999999999886 55555 678
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCe-eEEEECCCCCEEEEEecCCCccccccCC
Q 012410 303 FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v-~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
...|.+++|+|+|++|++++ |++|++||+ +|+.+..+.++........+ ..+...+.+.+++ ++.
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------- 312 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VPY----------- 312 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EEE-----------
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Eec-----------
Confidence 89999999999999999999 999999999 68887766655432111112 2333334444444 444
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|++|++||+.+|+++.++.+|.. .|++++|+|||+.||||+.||+|
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYK----------------------------------TVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSS----------------------------------CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEECcCCcceeeeccCCC----------------------------------eEEEEEEcCCCCEEEEECCCCeE
Confidence 89999999999999999999987 89999999999999999999999
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
++||.
T Consensus 359 ~iw~~ 363 (408)
T 4a11_B 359 LAWVP 363 (408)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99983
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=321.90 Aligned_cols=289 Identities=12% Similarity=0.068 Sum_probs=229.5
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC--CCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
|.+.|.+++|+|+|+.|++ ++.+ ++++||++.+++ +...+..+ ...+.+++|+ |+|++|++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~----~~~d------~~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~~-~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAI----CPNN------HEVHIYEKSGNKWVQVHELKEH----NGQVTGVDWA-PDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTTSSEEEE----ECSS------SEEEEEEEETTEEEEEEEEECC----SSCEEEEEEE-TTTTEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEE----EeCC------CEEEEEeCCCCcEEeeeeecCC----CCcccEEEEe-CCCCEEEEEc
Confidence 7788999999999999998 4455 799999999886 43333322 2345589998 8999999999
Q ss_pred CCCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC--------CceeEEEEEcCCCc---EEEEEe-eCCcceeeEEEE
Q 012410 206 QDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS--------SHVPLKILSIEDGT---VLKVFY-HLLHRNKKVDFI 269 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s--------~d~tIklWdi~tG~---~l~tl~-~~~~~~~~V~F~ 269 (464)
.|++|+|||+.++++...+. ...|.+++|+|+ .|+.|++||+++++ +...+. .+...+.+++|+
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 99999999999998765442 567999999884 67899999999988 344443 455788999999
Q ss_pred ccCCCeEEEEeCCCeEEEEEC------------------CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 270 EQFNEKLLVKQENENLQILDV------------------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv------------------~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
| ++..+++++.|++|++||+ .+++++..+.+|...|.+++|+|+|++|++++ |++|++||
T Consensus 152 ~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 P-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp T-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred C-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9 4667778899999999995 47899999999999999999999999999999 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--C--eEEEEEccCCCCCC
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--G--KCLAKINATNCSPK 405 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G--~cl~tl~gh~~~~~ 405 (464)
+ +|+++.++.+|... |.+++|+|||++|++| . |++|+|||+.+ | +++.++..+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~-~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 231 ADKKMAVATLASETLP-----LLAVTFITESSLVAAG-H-----------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEE-T-----------TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCCceeEEEccCCCC-----eEEEEEecCCCEEEEE-e-----------CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 9 69999999999877 8999999999999988 4 99999999988 6 45555544332000
Q ss_pred cccccCCCCCCcccccccccccc----------------ccc-cccccCEEEEE-EcCCC---CEEEEeeCCCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIR----------------STV-GEALEDITSLF-YDEER---NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~l~~V~sla-fspDg---~~LaSgs~DgtVrlWd 463 (464)
. ......++ ... ..+...|++|+ +++|| +.|+||+.||+|+|||
T Consensus 294 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 294 R--------------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred h--------------hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 00001111 001 12334899998 45888 9999999999999998
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.61 Aligned_cols=319 Identities=12% Similarity=0.073 Sum_probs=250.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|...|.+|+|+|+|+.||+ ++.| ++|+||+..++++. +...+...+.+|+|+ | |++|++++
T Consensus 14 ~gh~~~V~~lafspdg~~lAs----gs~D------g~I~lw~~~~~~~~-----~~~~~~~~V~~l~fs-p-g~~L~S~s 76 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAI----ATVT------GEVHIYGQQQVEVV-----IKLEDRSAIKEMRFV-K-GIYLVVIN 76 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEE----EETT------SEEEEECSTTCEEE-----EECSSCCCEEEEEEE-T-TTEEEEEE
T ss_pred cCCCCCcEEEEECCCCCEEEE----EeCC------CEEEEEeCCCcEEE-----EEcCCCCCEEEEEEc-C-CCEEEEEE
Confidence 357888999999999999999 4456 79999998776653 222222445699998 7 88999999
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEE-----------EEEeeCCcceee
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVL-----------KVFYHLLHRNKK 265 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l-----------~tl~~~~~~~~~ 265 (464)
.|++|+|||+.+++++.++. ...|.+|+|+|+ .|++|++||++++++. .++.+|...+.+
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 99999999999999998876 568999999984 7899999999999875 123445678999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC------------------CCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------------------FMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh------------------~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
|+|+|.++..+++++.|++| |||++++++++++.+| ...|.+++|+|||++|||++ |++|
T Consensus 157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 99999655678889999999 9999999999988776 56799999999999999999 9999
Q ss_pred EEEeC-CCceEEE--ec---cCCC---------CcCCCCeeEEEEC----CCC-CEEEEEecCCCc--------------
Q 012410 327 AVWNF-RGELVTS--FE---DHLL---------WHPDCNTNNIYIT----SDQ-DLIISYCKAEPE-------------- 372 (464)
Q Consensus 327 klWd~-~Ge~l~t--l~---gH~~---------~~~~~~v~svafS----pDg-~~LaSgs~~~~~-------------- 372 (464)
+|||+ +|+++.. +. +|.. .+ .-.|++++|+ ||+ .+|++|+.....
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~-~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTN-AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSC-CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccc-cCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999 6998864 42 3421 00 0128999994 554 678888543100
Q ss_pred ------------------------------------------------cc---cccCCCCeEEEEeCCCCeEEEE-----
Q 012410 373 ------------------------------------------------DQ---WMEGSAGSINVSSILTGKCLAK----- 396 (464)
Q Consensus 373 ------------------------------------------------~~---~~~s~DgtIklWdi~tG~cl~t----- 396 (464)
|. ++.+.|++|++||+.+|+.+..
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~ 394 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP 394 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence 00 2234579999999988853321
Q ss_pred ------------------------------------EccCCCCCCcccccCCCCCCcccccccccccccccccc------
Q 012410 397 ------------------------------------INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA------ 434 (464)
Q Consensus 397 ------------------------------------l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 434 (464)
|.||...+....+++++..+++.+.+++.++|+.....
T Consensus 395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 45665555555678889999999999999999854322
Q ss_pred -------------ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 -------------LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 -------------l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-..|++|+|||||++||+|+.||+|+|||
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 13799999999999999999999999998
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=324.75 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=218.1
Q ss_pred ceEEEEe--------ccceeehhccCCeEEeeeccc-------ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC
Q 012410 90 KVIEIVA--------ARDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (464)
Q Consensus 90 ~v~~~~~--------ag~~l~~l~~~g~~~~~~~~~-------g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sdd 154 (464)
.|..+.+ .+++|++++.||++++|++.+ ++++..+ .+|...|.+++|+|+|..|++ ++.|
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s----~s~D 97 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAIS----SSWD 97 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSSTTEEEE----EETT
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCCCCEEEE----EcCC
Confidence 4556655 478999999999999999764 4567777 558899999999999999999 4456
Q ss_pred CcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCE
Q 012410 155 FSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHV 229 (464)
Q Consensus 155 fs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V 229 (464)
++++|||+++|++...+..|. ..+.+|+|+ |||+.|++|+.|++|||||+. +.+...+. ...|
T Consensus 98 ------~~v~lwd~~~~~~~~~~~~h~----~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 98 ------KTLRLWDLRTGTTYKRFVGHQ----SEVYSVAFS-PDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWV 165 (343)
T ss_dssp ------SEEEEEETTSSCEEEEEECCC----SCEEEEEEC-SSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCE
T ss_pred ------CcEEEEECCCCcEEEEEcCCC----CcEEEEEEC-CCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCcee
Confidence 799999999998765444443 334589997 899999999999999999997 45554432 4579
Q ss_pred eEEEEeCC------------------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 230 QEIKIRSS------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 230 ~~Vafs~s------------------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
.+++|+|. .|++|+||| .+++++.++..|...+.+++|+| ++..|++++.|++|+|||+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESS
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 99999874 478999999 46888899997778999999999 46677789999999999994
Q ss_pred -CCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEE--Eec-----------cCCCCcCCCCeeEEEE
Q 012410 292 -NAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVT--SFE-----------DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 292 -tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~--tl~-----------gH~~~~~~~~v~svaf 356 (464)
.+.+...+. +...|.+++|+|+++++++++|++|+|||+ +++++. +++ +|... |++++|
T Consensus 244 ~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~ 317 (343)
T 2xzm_R 244 NLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-----CTSLAW 317 (343)
T ss_dssp CCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-----EEEEEE
T ss_pred CCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-----eEEEEE
Confidence 444545443 345699999999999998777999999999 576544 665 67766 899999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|||++||+|+. ||+|+|||+.+|+
T Consensus 318 sp~g~~l~sg~~-----------Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 318 NALGKKLFAGFT-----------DGVIRTFSFETSA 342 (343)
T ss_dssp CSSSCCEEEEET-----------TSEEEEEEEEEEE
T ss_pred CCCCCeEEEecC-----------CceEEEEEEEccC
Confidence 999999999987 9999999988764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=331.61 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=195.3
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC--CCcccceeeccccCceEEEEeCC-CCc
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFESESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~p-dGk 199 (464)
.+-.+|.+.|++|+|+|+|+.||+ ++.| ++++|||+.+|+. ...+.. |.+.+..|+|++| +|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~las----gs~D------~~v~lwd~~~~~~~~~~~l~g----H~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLAT----CSSD------RSVKIFDVRNGGQILIADLRG----HEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp -------CCEEEEEECGGGCEEEE----EETT------TEEEEEEEETTEEEEEEEEEC----CSSCEEEEEECCGGGSS
T ss_pred eecccccCeEEEeeEcCCCCEEEE----EeCC------CeEEEEEecCCCcEEEEEEcC----CCccEEEEEeCCCCCCC
Confidence 333569999999999999999999 4456 7999999988753 222222 2244558999744 599
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLV 278 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla 278 (464)
+|||||.|++|||||++++++ +++.++.+|...+.+|+|+|+. +..|++
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTW------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILAC 122 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCC------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEE
T ss_pred EEEEEECCCEEEEEECCCCcc------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEE
Confidence 999999999999999876532 1223344444667888888753 456777
Q ss_pred EeCCCeEEEEECCCCc---EEEEcccCCCceEEEEEcCC-----------------CcEEEEEe-CCeEEEEeCC-C---
Q 012410 279 KQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE-----------------NQLFLTFR-NRTVAVWNFR-G--- 333 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~Fspd-----------------gqllaS~s-D~TIklWd~~-G--- 333 (464)
++.|++|+|||++++. +...+.+|...|.+++|+|+ +++|||++ |++|||||++ +
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 8999999999999873 24678899999999999998 57999999 9999999994 4
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCC----CEEEEEecCCCccccccCCCCeEEEEeCCCC---e-EEEEEccCCCCCC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILTG---K-CLAKINATNCSPK 405 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg----~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~-cl~tl~gh~~~~~ 405 (464)
+++.+|++|..+ |++|+|+|++ ++|||||. |++|+|||+.++ + +...+.+|..
T Consensus 203 ~~~~~l~~h~~~-----V~~v~~sp~~~~~~~~las~s~-----------D~~v~iw~~~~~~~~~~~~~~~~~~~~--- 263 (316)
T 3bg1_A 203 KEEQKLEAHSDW-----VRDVAWAPSIGLPTSTIASCSQ-----------DGRVFIWTCDDASSNTWSPKLLHKFND--- 263 (316)
T ss_dssp EEEECCBCCSSC-----EEEEECCCCSSCSCCEEEEEET-----------TCEEEEEECSSTTCCCCBCCEEEECSS---
T ss_pred ceeeecccCCCc-----eEEEEecCCCCCCCceEEEEcC-----------CCeEEEEEccCccccchhhhhhhcCCC---
Confidence 478899999998 8999999997 89999997 999999999762 2 3345667765
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.||+|+.|++|+||+
T Consensus 264 -------------------------------~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 264 -------------------------------VVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp -------------------------------CEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred -------------------------------cEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 899999999999999999999999997
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.31 Aligned_cols=336 Identities=12% Similarity=0.086 Sum_probs=278.1
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccc----cEeeEeecCCCce-EEEEEEee--CCCEEEEEEeecCCCCcccce
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEV-IRSLFYNK--NNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g----~~l~~ln~~~~~~-i~Sv~fs~--~g~~l~svSa~~sddfs~L~~ 160 (464)
.+..+.+. |++|++.+ ++.+++|++.++ +.+..+ .+|... |.+++|+| +|+.|++++ .|
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~----~d------ 87 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGD----ES------ 87 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEE----TT------
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEec----CC------
Confidence 34444444 88888887 889999999999 899999 558888 99999999 999999944 45
Q ss_pred eeEEEEEeccC--------CCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCCCeEEEEec--C
Q 012410 161 RSTKIEYIRRG--------KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS--D 226 (464)
Q Consensus 161 ~ti~l~~i~~G--------~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~tg~~l~tl~--~ 226 (464)
++++||++.+| ++...+.. +...+..++|+ |||+.|++++.| +.|++|| +++++.++. .
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~ 160 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQV----LAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS 160 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEEC----CSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred CEEEEEeCCCCcccccccccccchhhc----ccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence 79999999876 32222221 22445589997 899999999988 6899998 677888776 5
Q ss_pred CCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCc---ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc
Q 012410 227 KHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLH---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294 (464)
Q Consensus 227 ~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~---~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~ 294 (464)
..|.+++|+|+ .|++|++||+++++++.++..+.. .+.+++|+|+.+..+++++.|++|++||+.+++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 68999999885 568999999999999999997667 899999999436778889999999999999999
Q ss_pred EEEEc-c---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 295 LMEVS-R---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 295 ~l~~l-~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
++..+ . +|...|.+++|+ ++++|++++ |++|++||+ +|+++.++..|...+.. .+.++.|+ ++++|++++.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~ 317 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN-QQVGVVAT-GNGRIISLSL 317 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG-CEEEEEEE-ETTEEEEEET
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC-ceeEEEeC-CCCeEEEEEC
Confidence 99999 6 899999999999 999999999 999999999 69999999988432211 26788885 9999999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccc---cccccCEEEEEEcC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV---GEALEDITSLFYDE 445 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~V~slafsp 445 (464)
|++|++||+.+++++.++.+|...+....+ ++ +++...+...++|... ...-..|.+++| +
T Consensus 318 -----------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~ 381 (615)
T 1pgu_A 318 -----------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S 381 (615)
T ss_dssp -----------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEEC-C
T ss_pred -----------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEE-C
Confidence 999999999999999999999875544455 43 6777777777777743 344458999999 7
Q ss_pred CCCEEEEeeCCCcEEecc
Q 012410 446 ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs~DgtVrlWd 463 (464)
+++.|++++.|++|++||
T Consensus 382 ~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp STTCCEEEETTTEEEETT
T ss_pred CCcEEEEEeCCCCEEEEE
Confidence 788999999999999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=309.50 Aligned_cols=269 Identities=13% Similarity=0.152 Sum_probs=230.5
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.+|.+++|+..+++.+..+. +|...|.++.|+|+|+.|++ ++.| ++++||
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s----~~~d------~~i~vw 92 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVS----ASDD------KTLKIW 92 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEE----EETT------SEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEE----ECCC------CEEEEE
Confidence 356666555 8999999999999999999999999994 58888999999999999999 4456 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++.++++...+..+. ..+..++|+ |+|++|++|+.|++|+|||++++++++++. ...|.+++|+|+
T Consensus 93 d~~~~~~~~~~~~~~----~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 93 DVSSGKCLKTLKGHS----NYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp ETTTCCEEEEEECCS----SCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCcEEEEEcCCC----CCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 999998765443333 344589997 899999999999999999999999999887 467999999874
Q ss_pred -CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE---EEEEc
Q 012410 238 -SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS---AFIFL 312 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~---sv~Fs 312 (464)
.|++|++||+.+++++.++. ++...+..++|+| ++..+++++.|++|+|||+++++++..+.+|...+. ...+.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 68899999999999999886 4445778999998 467788899999999999999999999999876433 23344
Q ss_pred CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 313 YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 313 pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+++++|++++ |++|++||+ +++++++|.+|... |.+++|+|++.+||+++. +.|++|+||+.
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l~s~~~---------~~d~~i~~W~~ 310 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-----VISTACHPTENIIASAAL---------ENDKTIKLWKS 310 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECSSSSEEEEEEC---------TTTCCEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-----EEEEeecCcCCceEEEEc---------cCCccEEEecC
Confidence 8899999999 999999999 69999999999988 899999999999999973 24999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=348.26 Aligned_cols=340 Identities=12% Similarity=0.118 Sum_probs=274.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
.|..+.+. |++|++...+|.+++|+..+|+.+..+. .|...|.++.|+|+|+.|++++ .+ ++++||+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~----~d------g~i~vw~ 83 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS----DD------FRIRVFN 83 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEe----CC------CeEEEEE
Confidence 45555555 8999999999999999999999999995 5888899999999999999944 45 7999999
Q ss_pred eccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEec--CCCEeEEEEeC-C------
Q 012410 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS--DKHVQEIKIRS-S------ 237 (464)
Q Consensus 168 i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~--~~~V~~Vafs~-s------ 237 (464)
+.+|+....+..+. ..+.+++|+ |+|+.|++|+.|++|+|||+.++ .+..++. ...|.+++|+| +
T Consensus 84 ~~~~~~~~~~~~~~----~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 84 YNTGEKVVDFEAHP----DYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTTCCEEEEEECCS----SCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEecCC----CCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 99998754433332 345589997 89999999999999999999987 6666665 56799999998 3
Q ss_pred --CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 238 --SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
.|++|++||+.+++...++.. +...+..++|+|. ++..+++++.|++|++||+.+++++.++.+|...|.+++|+|
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 679999999999999988874 3367899999984 345677788999999999999999999999999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~--~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|++|++++ |++|++||. +|+++.++..|... +++++|+|+|+ ++++++ |+.+.+|++.
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 301 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNYIASGF------------DNGFTVLSLG 301 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-----EEEEEECTTCGGGEEEEEE------------TTEEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-----EEEEEEccCCCceEEEEEe------------CCCEEEEEcC
Confidence 999999999 999999999 69999999999887 89999999998 677765 6778899876
Q ss_pred CCeEEEEE-------------------------------------------ccCCCCCCcccccCCCCCCcccccccccc
Q 012410 390 TGKCLAKI-------------------------------------------NATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 390 tG~cl~tl-------------------------------------------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
++.....+ ..|...|....++++|..+++.. ++...
T Consensus 302 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~ 380 (814)
T 3mkq_A 302 NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYV 380 (814)
T ss_dssp CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEE
T ss_pred CCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEE
Confidence 54322222 12222233445666776666655 45555
Q ss_pred cccccc---ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 427 IRSTVG---EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~---~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|.... .....|.+++|||||+.||+++.||+|++|+
T Consensus 381 i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 381 IYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred EEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 555332 2234677899999999999999999999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=327.04 Aligned_cols=265 Identities=9% Similarity=0.088 Sum_probs=223.6
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
+.+++|+|+|+.|++++ .| +++++|++.+++....+..+ ......+|+ |||++||+|+.|++|+
T Consensus 59 ~~~~~~s~~g~~l~~~~----~d------~~v~i~d~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKAR----LD------GHDFLFNTIIRDGSKMLKRA-----DYTAVDTAK-LQMRRFILGTTEGDIK 122 (420)
T ss_dssp CTTCEEEEEETTEEEEE----ET------TEEEEEECCSEETTTTSCSC-----CEEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred ccceeeeecCCeEEEEE----cC------CcEEEEEecccceeeEEecC-----CceEEEEEe-cCCCEEEEEECCCCEE
Confidence 44789999999999955 34 69999999888875433322 112245675 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC
Q 012410 212 VFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
|||+++++++..+. ...|.+++|+|+ .|++|+|||+++|+++.++.+|...+.+++|+| ++..+++++.
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~ 201 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASL 201 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEET
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcC
Confidence 99999999998864 678999999884 679999999999999999998778999999999 4677888999
Q ss_pred CCeEEEEECCCCcEEEEcccC---CCceEE---------------------EEEcCCCcEEEEEe-CCeEEEEeC-CCce
Q 012410 282 NENLQILDVRNAELMEVSRTE---FMTPSA---------------------FIFLYENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh---~~~v~s---------------------v~FspdgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
|++|+|||+++++++..+..| ...+.+ ++|+|+|++|++++ |++|++||+ ++++
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 999999999999999988753 334444 44579999999999 999999999 6888
Q ss_pred EEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCC
Q 012410 336 VTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGS 412 (464)
Q Consensus 336 l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~ 412 (464)
+..+. +|... |.+++|+|+|+ +|++|+. ||+|+|||+.++++ +.++.+|..
T Consensus 282 ~~~~~~~~~~~-----v~~~~~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~---------- 335 (420)
T 3vl1_A 282 TIQLPSKFTCS-----CNSLTVDGNNANYIYAGYE-----------NGMLAQWDLRSPECPVGEFLINEG---------- 335 (420)
T ss_dssp EEEECCTTSSC-----EEEEEECSSCTTEEEEEET-----------TSEEEEEETTCTTSCSEEEEESTT----------
T ss_pred eEEcccccCCC-----ceeEEEeCCCCCEEEEEeC-----------CCeEEEEEcCCCcCchhhhhccCC----------
Confidence 77765 47766 89999999999 9999987 99999999999866 889988543
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..|++++| |+|+.|+||+.|++|+|||
T Consensus 336 -----------------------~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 336 -----------------------TPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp -----------------------SCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred -----------------------CCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 17888855 5889999999999999998
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=329.14 Aligned_cols=301 Identities=11% Similarity=0.066 Sum_probs=213.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--CCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
+...|.+++|+|+|+.|++ ++.| ++++||++.++ ++...+..|. ..+.+++|+ |+|++|++|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~----~~~d------~~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~s-~~~~~l~s~s 74 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVT----TTAT------NQVELYEQDGNGWKHARTFSDHD----KIVTCVDWA-PKSNRIVTCS 74 (377)
T ss_dssp CSSCCSCCEECSSSSEEEC----CCSS------SCBCEEEEETTEEEECCCBCCCS----SCEEEEEEC-TTTCCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEE----ecCC------CEEEEEEccCCceEEEEEEecCC----ceEEEEEEe-CCCCEEEEEe
Confidence 4567999999999999988 5566 79999999988 5555444443 345589997 8999999999
Q ss_pred CCCcEEEEeCCCCe---EEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCc---EEEEEee-CCcceeeEEE
Q 012410 206 QDSIYKVFDLKNYT---MLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGT---VLKVFYH-LLHRNKKVDF 268 (464)
Q Consensus 206 ~D~tiKlWdl~tg~---~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~---~l~tl~~-~~~~~~~V~F 268 (464)
.|++|+|||+.+++ ++..+. ...|.+++|+|+ .|++|++||+++++ +++.+.. |...+.+++|
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 99999999999987 555554 578999999884 67899999999998 4788886 6788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECC------------------CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVR------------------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~------------------tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+| ++..+++++.|++|+|||+. +++++..+ +|...|.+++|+|||++||+++ |++|+||
T Consensus 155 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 155 HP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp CT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred cC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99 46677778999999999985 57788888 9999999999999999999999 9999999
Q ss_pred eC-CCce----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CC-eEEEEEccCCC
Q 012410 330 NF-RGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG-KCLAKINATNC 402 (464)
Q Consensus 330 d~-~Ge~----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG-~cl~tl~gh~~ 402 (464)
|+ ++++ +.++.+|... |.+++|+|||++|++|+. |+.+ +|+.. +| ++...+.....
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLP-----LRSLLWANESAIVAAGYN-----------YSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp EECSTTSCEEECCCEECSSSC-----EEEEEEEETTEEEEEESS-----------SSEE-EECCCC---CCSBCCCSCCC
T ss_pred ECCCCCCcceeeEeecCCCCc-----eEEEEEcCCCCEEEEEcC-----------CcEE-EEEeCCCceEEEeeeccccc
Confidence 99 6888 8999999988 899999999999999974 6666 66654 33 23333332211
Q ss_pred CCCcccccCCCCCCcccccccc------ccccc------------cccccccCEEEEEEcCCC-C---EEEEeeCCCcEE
Q 012410 403 SPKVDDELGSSSTGKSKKLNKS------SYIRS------------TVGEALEDITSLFYDEER-N---EIYTGNRHGLVH 460 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~~~~~l~~V~slafspDg-~---~LaSgs~DgtVr 460 (464)
.. .......+..+ ....... ..+.. ...-+-..|++|++.|+. . .|+||+.||+|+
T Consensus 296 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 296 KT-SFTHTGNTGEG-REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CC-CBSSSSSBCCC-CCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred cc-ccccccccccc-cccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 00 00000000000 0000000 00000 001134589999965544 4 699999999999
Q ss_pred eccC
Q 012410 461 VWSN 464 (464)
Q Consensus 461 lWd~ 464 (464)
|||.
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=319.47 Aligned_cols=296 Identities=9% Similarity=0.048 Sum_probs=214.7
Q ss_pred eeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEE
Q 012410 112 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~V 191 (464)
+|++.+.+.+..+ ..|...|++|+|||||+.|++ ++++ .++||++.+++.. +.. .......+
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~dg~~la~----g~~~-------~~~iw~~~~~~~~-----~~~-~~~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQDQSCLIL----STLK-------SFEIYNVHPVAHI-----MSQ-EMRHLSKV 64 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEE----ECSS-------EEEEEEETTEEEE-----EEE-ECSCCCEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECCCCCEEEE----EcCC-------EEEEEecCCccee-----eee-ecCCeEEE
Confidence 4556777888777 448888999999999999988 5555 5789998876642 221 11235578
Q ss_pred EEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcCCC-cEEEEEeeCCcce
Q 012410 192 EFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIEDG-TVLKVFYHLLHRN 263 (464)
Q Consensus 192 aFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~tG-~~l~tl~~~~~~~ 263 (464)
+|. +++..+ ++|+.|++|+|||+++++++.++. ...|.+|+|+++ .|.+|+|||+.++ ++++++.. ..
T Consensus 65 ~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 65 RML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEC-TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEc-CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CC
Confidence 997 677777 568889999999999999998887 568999999884 5778999999999 88777764 34
Q ss_pred eeEEEEccCCCeEEE--EeCCCeEEEEECCCCc----------------EEEEcccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 264 KKVDFIEQFNEKLLV--KQENENLQILDVRNAE----------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 264 ~~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~----------------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
..++|++ ..+++ ++.|++|+|||+.+++ ++.++.+|...|.+++|+|||++|||++ |+
T Consensus 141 ~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 141 GVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 5566666 56666 4699999999999987 3788999999999999999999999999 99
Q ss_pred e-EEEEeC-CCceEEEec-c-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEc
Q 012410 325 T-VAVWNF-RGELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKIN 398 (464)
Q Consensus 325 T-IklWd~-~Ge~l~tl~-g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~ 398 (464)
+ |+|||+ +|+++.+|. | |... |++++|+|||++||+++. |++|+|||+.++.. ...+.
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~-----v~~~~~s~~~~~l~s~s~-----------d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRAD-----VVDMKWSTDGSKLAVVSD-----------KWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSC-----EEEEEECTTSCEEEEEET-----------TCEEEEEESSCCSCCCSEETT
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCc-----EEEEEECCCCCEEEEEEC-----------CCEEEEEEccCCCCccccccc
Confidence 9 999999 699999999 6 8877 899999999999999987 99999999977632 12221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccc--cccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRS--TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++-. |. . ....+.+.. ...........++|+|||+.|++|+.||++++|+
T Consensus 282 ~~~~-~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 282 GWIN-MK---------Y-----FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp TTEE-CC---------C-----CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ceee-cc---------c-----cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 1100 00 0 000000000 0001111346699999999999999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=302.10 Aligned_cols=274 Identities=9% Similarity=0.088 Sum_probs=222.7
Q ss_pred hccc-cceEEEEec---cceeehhccCCeEEeeeccccc-----EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCC
Q 012410 85 LMKR-TKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF 155 (464)
Q Consensus 85 l~~~-s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~-----~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddf 155 (464)
|+.+ ..|..+.+. +++|++++.||++++||+.+++ ++..+ .+|...|.++.|+|+|+.|++++ .|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~----~d- 107 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGS----WD- 107 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE----TT-
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEc----cc-
Confidence 4444 346666664 6899999999999999976543 56677 45899999999999999999944 55
Q ss_pred cccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe-c--CCCEeEE
Q 012410 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKHVQEI 232 (464)
Q Consensus 156 s~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl-~--~~~V~~V 232 (464)
+.+++|+...+........ ....+..+.|+ ++++.|++|+.|+.+++||+......... . ...|..+
T Consensus 108 -----~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 108 -----GTLRLWDLTTGTTTRRFVG----HTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp -----SEEEEEETTTTEEEEEEEC----CSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred -----ccceEEeecccceeeeecC----CCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 6899999877665322111 12233367786 89999999999999999999876654332 2 4679999
Q ss_pred EEeC----------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC
Q 012410 233 KIRS----------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 233 afs~----------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
+|++ +.|++|++||+++++++.++.+|...+.+|+|+| ++..|++++.|++|+|||+++++++..+.+|
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9975 3678999999999999999998778999999998 4667777899999999999999999999877
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEec---------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFE---------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~---------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
..+.+++|+|++.+++++.|++|+|||+ .++++.++. +|... |++++|+|||++||||+.
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~---- 326 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----CTSLAWSADGQTLFAGYT---- 326 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-----EEEEEECTTSSEEEEEET----
T ss_pred -ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-----EEEEEECCCCCEEEEEeC----
Confidence 5799999999999887777999999999 577777765 56665 899999999999999987
Q ss_pred cccccCCCCeEEEEeCCCCe
Q 012410 373 DQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~ 392 (464)
||+|+|||+.||+
T Consensus 327 -------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 327 -------DNLVRVWQVTIGT 339 (340)
T ss_dssp -------TSCEEEEEEEC--
T ss_pred -------CCEEEEEeCCCcC
Confidence 9999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=349.81 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=209.2
Q ss_pred cccEeeEeecCCCceEEEEEEeeCC---------CEEEEEEee---------------cCCCCcccceeeEEEEEeccCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNN---------DSLITVSVY---------------ASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g---------~~l~svSa~---------------~sddfs~L~~~ti~l~~i~~G~ 172 (464)
++++...++ +...|++|.|+|++ ++||+++.. ++.| .+|+||++.+++
T Consensus 123 ~~r~~~~~~--~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D------~tI~iWd~~~~~ 194 (524)
T 2j04_B 123 GKRRGFIYN--VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHS------SCIQIFKMNTST 194 (524)
T ss_dssp CCSCEEEEE--CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------C------EEEEEEEEETTT
T ss_pred CCcceEEEE--CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCC------ceEEEEEccCCC
Confidence 455555664 46779999999997 788886532 3344 899999998887
Q ss_pred CCCcccc-eeeccccCceEEEEeCCC------CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 173 PDSGFAL-FESESLKWPGFVEFDDVN------GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 173 ~~~~~~l-~~~~~~~~~~~VaFs~pd------Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+...... +. .+.+.+..|+|+ |+ |++||||+.|++|||||+.++.+... ...
T Consensus 195 ~~~~~~~~l~-~~~~~V~~v~ws-p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----------------~~~--- 253 (524)
T 2j04_B 195 LHCVKVQTIV-HSFGEVWDLKWH-EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----------------VFK--- 253 (524)
T ss_dssp CCEEEEEEEE-ECCCSEEEEEEC-SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----------------EEE---
T ss_pred CCceEEEEEE-ecCCcEEEEEEC-CCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----------------cce---
Confidence 5321100 11 123456689998 65 68999999999999999987653200 000
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEE--EEcCCC-cEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAF--IFLYEN-QLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv--~Fspdg-qllaS~ 321 (464)
.-.+...++.+|...+.+|+|++. +.|++|+.|++|+|||+++++ ++.++.+|...|.+| +|+|+| ++|||+
T Consensus 254 --~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 254 --MCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp --CCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred --eecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 001223456656678899999874 688889999999999999875 456789999999999 689998 999999
Q ss_pred e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 322 R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 322 s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
| |+||||||+ +++++.++.+|.... +|++|+|+||++.||+++. |++|||||+.+++|+.++.+
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~---~v~~v~fsp~~~~l~s~~~-----------d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGS---NLVPVVYCPQIYSYIYSDG-----------ASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCC---SCCCEEEETTTTEEEEECS-----------SSEEEEEETTCTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCcccccccccccC---cccceEeCCCcCeEEEeCC-----------CCcEEEEECcccccceeeec
Confidence 9 999999999 699999999997521 2788999999999999886 99999999999999999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|.+ .|++|+|||||+.|||||.||+|+|||.
T Consensus 396 H~~----------------------------------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 396 RET----------------------------------TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CSS----------------------------------CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred CCC----------------------------------ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 997 9999999999999999999999999983
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=319.38 Aligned_cols=312 Identities=13% Similarity=0.167 Sum_probs=225.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-----------CCcccceeec--------cccC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-----------DSGFALFESE--------SLKW 187 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-----------~~~~~l~~~~--------~~~~ 187 (464)
.+.+.|.+|+|+|+|+.||+ ++.| ++++||++.+++. ...+..|..+ ....
T Consensus 26 ~~~~~V~~v~~s~~g~~la~----g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLAT----GDKG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEE----EETT------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEECCCCCEEEE----EcCC------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 35688999999999999999 4455 7999999988873 2122222100 0033
Q ss_pred ceEEEEeCCCC--cEEEEecCCCcEEEEeCCCCeEE---------------------------------------EEe--
Q 012410 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-- 224 (464)
Q Consensus 188 ~~~VaFs~pdG--k~LaSgs~D~tiKlWdl~tg~~l---------------------------------------~tl-- 224 (464)
+..|+|+ |++ ..|++|+.|++|+|||+.++++. ..+
T Consensus 96 V~~l~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 5589997 888 79999999999999999876542 122
Q ss_pred -cCCCEeEEEEeCC-------CceeEEEEEcC-CCcEEEEE-------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 225 -SDKHVQEIKIRSS-------SHVPLKILSIE-DGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 225 -~~~~V~~Vafs~s-------~d~tIklWdi~-tG~~l~tl-------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
+...|.+|+|+|+ .|++|+|||++ .+++++.+ ..|...+.+++|+|..+..+++++.|++|+||
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 3567999999874 68999999999 56677644 35557789999999522677779999999999
Q ss_pred ECCCCcE----EEEcccCCC------------ceEEEEEcCCCcEEEEEeCCeEEEEeC-C-CceEEEeccCCCCcC---
Q 012410 289 DVRNAEL----MEVSRTEFM------------TPSAFIFLYENQLFLTFRNRTVAVWNF-R-GELVTSFEDHLLWHP--- 347 (464)
Q Consensus 289 Dv~tg~~----l~~l~gh~~------------~v~sv~FspdgqllaS~sD~TIklWd~-~-Ge~l~tl~gH~~~~~--- 347 (464)
|++++++ +.++.+|.. .|.+++|+|+|++|+++++++|+|||+ . ++++.++.+|.....
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccc
Confidence 9999997 789999886 899999999999999999999999999 5 999999999975321
Q ss_pred -----CC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 348 -----DC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 348 -----~~--~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+| .+.+++|+|||++||+|+. ||+|+|||+.+|+++ ++.+|.............. .+...
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----------dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 401 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSY-----------NNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRK-VCASG 401 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECS-----------TTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCC-EECSS
T ss_pred ccccccccccceEEEECCCCCEEEEecc-----------CCEEEEEEcCCCcce-eeeecccccccccccCCcc-ccccC
Confidence 01 0224999999999999987 999999999999987 6777765221111111000 00000
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
......+....-+.-..|..++|+|+|+.||+|+.|+ +.+|+
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 0000000000011223789999999999999999988 55554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=315.11 Aligned_cols=270 Identities=14% Similarity=0.173 Sum_probs=226.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
....+.+.+..++.++.| +++.|++ ++.| +++++|++.+|++...+..|+ +.+.+++|+ |++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~s----gs~d------g~i~vwd~~~~~~~~~~~~h~----~~V~~l~~~-~~~- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVIT----GADD------KMIRVYDSINKKFLLQLSGHD----GGVWALKYA-HGG- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEE----EETT------SCEEEEETTTTEEEEEECCCS----SCEEEEEEC-STT-
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEE----EcCC------CcEEEEECCCCcEEEEEeCCC----cCEEEEEEc-CCC-
Confidence 445675644555677666 4678988 4456 799999999998765544443 344589997 788
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCc----------------
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGT---------------- 251 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~---------------- 251 (464)
.|++|+.|++|+|||+.+++++.++. ...|.+++|++ +.|++|++||+++++
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99999999999999999999999886 57899999974 378999999999887
Q ss_pred -------EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 252 -------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 252 -------~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
++.++.++...+..+. + ++..+++++.|++|++||+.+++++..+.+|...|.+++|+|+|++|++++ |
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 3556666556666664 3 457888899999999999999999999999999999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+ +|+++.++.+|... |.+++|+ +++|++++. ||+|++||+.++++..++. |..
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~-~~~ 392 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRKFSYH-HTN 392 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CTT
T ss_pred CcEEEEECCCCcEEEEEeCCCCc-----EEEEEEc--CCEEEEEeC-----------CCcEEEEECCCCceeeeec-CCC
Confidence 99999999 69999999999988 8899997 589999987 9999999999999887763 332
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+..++|+|+|+.|++|+ ||+|+|||.
T Consensus 393 ----------------------------------~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 393 ----------------------------------LSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp ----------------------------------CCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred ----------------------------------CccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 567789999999999999 999999984
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=304.29 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=230.2
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccceeeEEEEEecc-CCCC-Ccccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPD-SGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~-~~~~l~~~~ 183 (464)
.+..++....+.+..+ .+|.+.|.+|+|+|+ |+.|++ ++.| ++++||++.+ ++.. ..+..
T Consensus 20 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~----~~~d------g~i~iw~~~~~~~~~~~~~~~---- 84 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIA----GSWA------NDVRCWEVQDSGQTIPKAQQM---- 84 (368)
T ss_dssp ---CCSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEE----EETT------SEEEEEEECTTSCEEEEEEEE----
T ss_pred EeccCCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEE----ECCC------CcEEEEEcCCCCceeEEEecc----
Confidence 3445555666777777 558999999999999 689988 4455 7999999987 5432 11221
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE--eCC--------CceeEEEEEcCCCcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI--RSS--------SHVPLKILSIEDGTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf--s~s--------~d~tIklWdi~tG~~ 252 (464)
+...+.+++|+ |||++|++|+.|++|+|||+.+++++.... ...|.+++| +|+ .|++|++||++++++
T Consensus 85 h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 85 HTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred ccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 23445589997 899999999999999999999999887554 678999999 653 689999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-E-cccCCCceEEEEEcCCCcE----EEEEe-CCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-V-SRTEFMTPSAFIFLYENQL----FLTFR-NRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~-l~gh~~~v~sv~Fspdgql----laS~s-D~T 325 (464)
+.++..+ ..+..+++.+ ..+++++.|+++++||+.+..... . ...+...+..+.+.++++. +++++ |++
T Consensus 164 ~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 164 MMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp SEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 9999865 4667777765 578888999999999998876433 2 2233445566666665554 88998 999
Q ss_pred EEEEeCC-C---ceEEEeccCCC------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 326 VAVWNFR-G---ELVTSFEDHLL------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 326 IklWd~~-G---e~l~tl~gH~~------------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|++||++ + +++.++.+|.. . |.+++|+|||++||+|+. ||+|+|||+.
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~~ 303 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA-----VNGIAFHPVHGTLATVGS-----------DGRFSFWDKD 303 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECC-----EEEEEECTTTCCEEEEET-----------TSCEEEEETT
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccc-----eEEEEEecCCCEEEEEcc-----------CCeEEEEECC
Confidence 9999994 5 67889999986 4 899999999999999987 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|+|+.++.+|.. .|++++|+|||+.||+|+.|+..+.|+
T Consensus 304 ~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 304 ARTKLKTSEQLDQ----------------------------------PISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TTEEEEECCCCSS----------------------------------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCcEEEEecCCCC----------------------------------CceEEEECCCCCeEEEEeccccccccc
Confidence 9999999999986 899999999999999999998766654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=299.57 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=217.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+...|.+++|+|||+.++++. ..+. +.+|..... ........+...+.+++|+ |||++|++++ |
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~--~~~~--------~~~~~~~~~----~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~-d 71 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPF--PPDA--------LIGPGIPRH----ARQINTLNHGEVVCAVTIS-NPTRHVYTGG-K 71 (337)
T ss_dssp EEEECCEEEECSSSCEEECCC--CTTS--------SSSTTCCSE----EEEEEEECCSSCCCEEEEC-SSSSEEEEEC-B
T ss_pred cCCceeEEEECCCCCEEEeec--CCCc--------EeccccCCc----cccceeccCCCceEEEEEe-cCCcEEEEcC-C
Confidence 456789999999999998733 2221 122221111 1111111223445589997 8999999999 9
Q ss_pred CcEEEEeCCCCeEE---EEe----cCCCEeEEEEeCC--------CceeEEEEEcCCCc--EEEEEeeCCcceeeEEEEc
Q 012410 208 SIYKVFDLKNYTML---YSI----SDKHVQEIKIRSS--------SHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 208 ~tiKlWdl~tg~~l---~tl----~~~~V~~Vafs~s--------~d~tIklWdi~tG~--~l~tl~~~~~~~~~V~F~~ 270 (464)
++|+|||+.+++.. ..+ +...|.+++|+|+ .|++|++||+++++ +...+..+...+..++|+|
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 99999999987643 332 2567999999984 67899999999998 6667776667889999998
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
++..+++++.|++|++||+++++++..+.+|...+.+++|+|++++|++++ |++|++||+ +++++..+. |...
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~--- 226 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ--- 226 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC---
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCc---
Confidence 466778899999999999999999999999999999999999999999999 999999999 699888875 5444
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++|+|||++|++++. |++|++||+.+++.. .+.+|..
T Consensus 227 --v~~~~~s~~~~~l~~~~~-----------~~~i~~~~~~~~~~~-~~~~~~~-------------------------- 266 (337)
T 1gxr_A 227 --IFSLGYCPTGEWLAVGME-----------SSNVEVLHVNKPDKY-QLHLHES-------------------------- 266 (337)
T ss_dssp --EEEEEECTTSSEEEEEET-----------TSCEEEEETTSSCEE-EECCCSS--------------------------
T ss_pred --eEEEEECCCCCEEEEEcC-----------CCcEEEEECCCCCeE-EEcCCcc--------------------------
Confidence 889999999999999986 999999999988864 6778876
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+++|+|||+.|++++.||+|++||.
T Consensus 267 --------~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 267 --------CVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp --------CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred --------ceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 8999999999999999999999999984
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=321.02 Aligned_cols=260 Identities=14% Similarity=0.257 Sum_probs=226.2
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|...|.++.| +|+.|++ ++.| +++++|++.+|++...+..+. +.+.+++| ||++|++|+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~----g~~d------g~i~iwd~~~~~~~~~~~~h~----~~v~~l~~---~~~~l~sg~~ 191 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVS----GLRD------NTIKIWDKNTLECKRILTGHT----GSVLCLQY---DERVIITGSS 191 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEE----EESS------SCEEEEESSSCCEEEEECCCS----SCEEEEEC---CSSEEEEEET
T ss_pred CCCCcEEEEEE--CCCEEEE----EeCC------CeEEEEeCCCCeEEEEEcCCC----CcEEEEEE---CCCEEEEEcC
Confidence 45566888877 7899999 4455 799999999998765444433 23336666 6889999999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEE---EEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l---~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
|++|+|||+.+++++.++. ...|.+++|++ +.|++|++||+++++.+ ..+.+|...+..++| ++..
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~ 268 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY 268 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCE
Confidence 9999999999999999887 56799999976 48899999999999876 566666678899998 3478
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
+++++.|++|++||+++++++.++.+|...|.+++| ++++|++++ |++|++||+ +|+++.++.+|... |.+
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~ 341 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRC 341 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEE
T ss_pred EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc-----EEE
Confidence 888999999999999999999999999999999988 578999999 999999999 69999999999988 888
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
++| |+++|++|+. ||+|+|||+.+++ |+.++.+|..
T Consensus 342 ~~~--~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~---------------------- 386 (435)
T 1p22_A 342 IRF--DNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG---------------------- 386 (435)
T ss_dssp EEC--CSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS----------------------
T ss_pred EEe--cCCEEEEEeC-----------CCcEEEEECCCCCCccccccchheeeccCCCC----------------------
Confidence 888 8999999987 9999999998888 9999999987
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++| |++.|+||+.||+|++||.
T Consensus 387 ------------~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 387 ------------RVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ------------CCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred ------------CeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 8899999 8899999999999999984
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=313.34 Aligned_cols=267 Identities=12% Similarity=0.135 Sum_probs=224.9
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
+.++.+++ +.+++++ .| ++++||++.+|++... +...+...+.+|+|+ |||++|++|+.|++|+
T Consensus 96 ~~~~~~s~--~~l~~~~----~d------~~v~lw~~~~~~~~~~---~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVA----LE------RNVYVWNADSGSVSAL---AETDESTYVASVKWS-HDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEE----ET------TEEEEEETTTCCEEEE---EECCTTCCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEE----CC------CeEEEeeCCCCcEeEe---eecCCCCCEEEEEEC-CCCCEEEEECCCCeEE
Confidence 44566665 4466633 34 6999999999987532 222233456689997 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 212 VFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
|||+.+++++.++. ...|.+++|++ +.|++|++||+. .++++.++..|...+.+++|+| ++..+++++.|
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d 238 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGND 238 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCC
Confidence 99999999999886 56899999976 588999999999 6778888987778999999999 56778889999
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
++|+|||+++++++..+.+|...|.+++|+|++ .++++++ |++|++||+ +|+++.++..+ .. |.+++|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~-----v~~~~~s 312 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ-----VTSLIWS 312 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC-----EEEEEEC
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc-----EEEEEEC
Confidence 999999999999999999999999999999976 5777753 999999999 69999999744 34 8999999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE--EccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t--l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
|||++|++++. +.||+|+|||+.++++... +.+|..
T Consensus 313 ~~~~~l~~~~g---------~~dg~i~v~~~~~~~~~~~~~~~~h~~--------------------------------- 350 (401)
T 4aez_A 313 PHSKEIMSTHG---------FPDNNLSIWSYSSSGLTKQVDIPAHDT--------------------------------- 350 (401)
T ss_dssp SSSSEEEEEEC---------TTTCEEEEEEEETTEEEEEEEEECCSS---------------------------------
T ss_pred CCCCeEEEEee---------cCCCcEEEEecCCccceeEEEecCCCC---------------------------------
Confidence 99999999541 1399999999999877655 678886
Q ss_pred cCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 436 EDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 436 ~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+++|+|||+.|++|+.||+|++||.
T Consensus 351 -~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 351 -RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp -CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred -CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 8999999999999999999999999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=338.08 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=237.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
..+.+ .+|.+.|.+++|+|+|..|++++ .+ ++++||++.+|+....+..+. +.+.+++|+ |||+
T Consensus 5 ~~~~~-~~h~~~v~~i~~sp~~~~la~~~----~~------g~v~iwd~~~~~~~~~~~~~~----~~v~~~~~s-~~~~ 68 (814)
T 3mkq_A 5 IKKTF-SNRSDRVKGIDFHPTEPWVLTTL----YS------GRVEIWNYETQVEVRSIQVTE----TPVRAGKFI-ARKN 68 (814)
T ss_dssp CEEEE-EEECSCEEEEEECSSSSEEEEEE----TT------SEEEEEETTTTEEEEEEECCS----SCEEEEEEE-GGGT
T ss_pred cceee-ecCCCceEEEEECCCCCEEEEEe----CC------CEEEEEECCCCceEEEEecCC----CcEEEEEEe-CCCC
Confidence 34556 44888999999999999999944 45 699999999988765444333 345589998 8999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F 268 (464)
.||+|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|++||++++ .+..++.++.+.+.+++|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999999999998876 567999999984 6799999999988 777888877789999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|.++..+++++.|++|++||+.+++....+..|. ..+..++|+| ++++|++++ |++|++||+ +|+++.++.+|.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 99545677778999999999999999887776655 7899999999 999999999 999999999 699999999998
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. |.+++|+|||++|++++. ||+|++||+.+++++.++..|..
T Consensus 229 ~~-----v~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~~~~--------------------- 271 (814)
T 3mkq_A 229 SN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE--------------------- 271 (814)
T ss_dssp SC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCSEEEEECCSSS---------------------
T ss_pred CC-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeecCCC---------------------
Confidence 87 899999999999999987 99999999999999999999976
Q ss_pred cccccccccccccCEEEEEEcCCCC--EEEEeeCCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~--~LaSgs~DgtVrlWd 463 (464)
.|++++|+|+|+ .+++|+ |+.+.+|+
T Consensus 272 -------------~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 272 -------------RSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp -------------SEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred -------------cEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 888999999987 456655 44455654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=314.68 Aligned_cols=270 Identities=10% Similarity=0.155 Sum_probs=218.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+|+||++. ++.+++||..+|+.+..+.. .|.+.|.+|+|+|+|+.|++ ++.| ++++||++.+|++...
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las----gs~D------g~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SCEEEEETTTTEEEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE----EECC------CeEEEEEcCCCcEEEE
Confidence 78887764 89999999999998887764 57788999999999999999 4556 7999999999987654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec--CCCEeEEEEeCC--------CceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIRSS--------SHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~--~~~V~~Vafs~s--------~d~tIklW 245 (464)
+..|. ..+.+++ +|+++|++|+.|+++++||..+.. .+.++. ...|..+.++|+ .|+.|+||
T Consensus 185 ~~~h~----~~v~~~s---~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 185 MTSHS----ARVGSLS---WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp ECCCS----SCEEEEE---EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeCCC----CceEEEe---eCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 44333 2222444 467899999999999999998754 445555 567999999873 78999999
Q ss_pred EcCCCcE----EEEEeeCCcceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 246 SIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 246 di~tG~~----l~tl~~~~~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
++.+|+. +..+..+...+..++|+|.....++++ +.|++|+|||+.+|+++..+..|. .+.+++|+|+++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELI 336 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEE
Confidence 9998873 456666667899999999655555553 489999999999999999998874 688999999999888
Q ss_pred EEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 320 TFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 320 S~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+++ |++|+|||+ +|+++.+|.||... |++|+|||||++|||||. |++|||||+.+..+.+
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWRCFELDPAR 400 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEECCSCSSCC-
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCCccc
Confidence 753 899999999 79999999999998 899999999999999997 9999999999888887
Q ss_pred EEccCCC
Q 012410 396 KINATNC 402 (464)
Q Consensus 396 tl~gh~~ 402 (464)
+.+.+..
T Consensus 401 ~~~~~~~ 407 (420)
T 4gga_A 401 RREREKA 407 (420)
T ss_dssp -------
T ss_pred hhhhccC
Confidence 7766654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=309.52 Aligned_cols=278 Identities=15% Similarity=0.266 Sum_probs=232.8
Q ss_pred EeeecccccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce
Q 012410 111 AAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (464)
Q Consensus 111 ~~~~~~~g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~ 189 (464)
+-|....-+....+.+ |.+ ++.+ ++++|+.|+++ +.| +++++|++.+|++...+..|. +.+.
T Consensus 101 ~~w~~~~~~~~~~l~~-h~~~v~~~--~~~~g~~l~sg----~~d------g~i~vwd~~~~~~~~~~~~h~----~~v~ 163 (445)
T 2ovr_B 101 TNWRRGELKSPKVLKG-HDDHVITC--LQFCGNRIVSG----SDD------NTLKVWSAVTGKCLRTLVGHT----GGVW 163 (445)
T ss_dssp HHHHHSCCCCCEEEEC-STTSCEEE--EEEETTEEEEE----ETT------SCEEEEETTTCCEEEECCCCS----SCEE
T ss_pred hcccCCCcceeEEecc-cCCCcEEE--EEEcCCEEEEE----ECC------CcEEEEECCCCcEEEEEcCCC----CCEE
Confidence 3453333345566755 655 4555 55568999994 456 799999999999866555444 3344
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+++|+ +.+|++|+.|++|++||+.+++++.++. ...|.+++|++ +.|++|++||+++|+++.++.++..
T Consensus 164 ~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 164 SSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp EEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred EEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 88896 5699999999999999999999999887 56799999976 4899999999999999999998778
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
.+.+++| ++..+++++.|++|++||+++++++..+.+|...|.+++| +++.|++++ |++|++||+ +|+++.++
T Consensus 241 ~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 241 AVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp CEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 8899998 4678888999999999999999999999999999999999 899999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.+|... +.++.+ ++++|++|+. ||+|++||+.+|+++.++.++..+
T Consensus 316 ~~~~~~-----v~~~~~--~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~---------------- 361 (445)
T 2ovr_B 316 TGHQSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNKH---------------- 361 (445)
T ss_dssp CCCCSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTSC----------------
T ss_pred cCCccc-----EEEEEE--eCCEEEEEeC-----------CCeEEEEECCCCcEEEEEccCCCC----------------
Confidence 999887 555554 6889999987 999999999999999999984320
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...|++++|+ ++.|++|+.||+|++||.
T Consensus 362 ---------------~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 362 ---------------QSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ---------------SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred ---------------CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 0189999995 689999999999999984
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=312.89 Aligned_cols=281 Identities=11% Similarity=0.151 Sum_probs=210.7
Q ss_pred ceEEEEec--cceeehhcc----CC---eEEeeecccccEe----------eEeecCCCceEEEEEEeeCCCEEEEEEee
Q 012410 90 KVIEIVAA--RDIVFALAH----SG---VCAAFSRETNRRI----------CFLNVSPDEVIRSLFYNKNNDSLITVSVY 150 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~----~g---~~~~~~~~~g~~l----------~~ln~~~~~~i~Sv~fs~~g~~l~svSa~ 150 (464)
||..+-|. |.+|+++.. +| .+++|++..+... ..| ..|.+.|.++.++ ++.+++.+..
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeC--CCEEEEEECC
Confidence 55555555 788888753 23 4999987654321 234 3466778887665 5667764322
Q ss_pred cCCCCcc-cceeeEEEEEeccCCCCCc----cccee-eccccCceEEEEeCCCCcEEE--EecCCCcEEEEeCCCCeEEE
Q 012410 151 ASDNFSS-LKCRSTKIEYIRRGKPDSG----FALFE-SESLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLY 222 (464)
Q Consensus 151 ~sddfs~-L~~~ti~l~~i~~G~~~~~----~~l~~-~~~~~~~~~VaFs~pdGk~La--Sgs~D~tiKlWdl~tg~~l~ 222 (464)
....++. -..+++++|++..++.... ..... ...-.++..|+|| |||++|| |++.|++|||||++++++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 2211221 1127899999876653210 01111 0112345589998 9999875 66689999999999999999
Q ss_pred Eec-CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCC----eEEEE
Q 012410 223 SIS-DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENE----NLQIL 288 (464)
Q Consensus 223 tl~-~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~----tIkIW 288 (464)
++. ...|.+|+|+|+ .+..+++|+..+|+++.... .+...+.+|+|+|+ +..+++++.|+ ++++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeec
Confidence 886 567999999995 56678899999999886544 45567899999994 56667777776 79999
Q ss_pred ECCCCcE----EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCC
Q 012410 289 DVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 289 Dv~tg~~----l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~ 361 (464)
|+..++. ...+.+|...|++++|||||++||+++ |++|+|||+ +|+++.++ ++|..+ |++|+|||||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~-----V~~v~fSpdg~ 325 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA-----ITEVTISPDST 325 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC-----EEEEEECTTSC
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC-----EEEEEECCCCC
Confidence 9988764 356789999999999999999999999 999999999 69999985 899998 89999999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+|||||. |+|||||||.+.
T Consensus 326 ~laS~S~-----------D~tvrvw~ip~~ 344 (365)
T 4h5i_A 326 YVASVSA-----------ANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEET-----------TSEEEEEECCTT
T ss_pred EEEEEeC-----------CCeEEEEEcCCC
Confidence 9999997 999999999643
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=302.37 Aligned_cols=273 Identities=12% Similarity=0.019 Sum_probs=225.7
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEe
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYS 204 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSg 204 (464)
..|.+.|.+++|+|+|+.|++++ .| ++++||++..++........ ..+...+.+++|+ |+|+ +|++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~----~d------~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITS----WD------GSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFI-DNTDLQIYVG 75 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEE-ESSSEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc----CC------CeEEEEEeCCCCccccceee-eecCCceEEEEEC-CCCCcEEEEE
Confidence 46999999999999999999844 45 69999999988721111111 1233455689998 8999 99999
Q ss_pred cCCCcEEEEeC-CCCeEEE-Ee--cCCCEeEEEEeC-------CCceeEEEEEcCC---------CcEEEEEeeCCccee
Q 012410 205 AQDSIYKVFDL-KNYTMLY-SI--SDKHVQEIKIRS-------SSHVPLKILSIED---------GTVLKVFYHLLHRNK 264 (464)
Q Consensus 205 s~D~tiKlWdl-~tg~~l~-tl--~~~~V~~Vafs~-------s~d~tIklWdi~t---------G~~l~tl~~~~~~~~ 264 (464)
+.|++|++||+ .+++... .. +...|.+++|+| +.|++|++||+.+ ++++.++. +...+.
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEE
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceE
Confidence 99999999999 8887643 22 456799999987 3778999999998 88888887 447889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCC-Cc--EEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CC-----
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRN-AE--LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RG----- 333 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~--~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~G----- 333 (464)
+++|++. .+++++.|++|++||+++ ++ .......|...+.+++|+| ++++|++++ |++|+|||+ .+
T Consensus 155 ~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 155 TMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEECSS---EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEecCC---cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999873 488899999999999998 65 3445567888999999999 999999999 999999999 45
Q ss_pred -ceEEEeccCCCCcC----CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC-CCCCCcc
Q 012410 334 -ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVD 407 (464)
Q Consensus 334 -e~l~tl~gH~~~~~----~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh-~~~~~~~ 407 (464)
+++.+|.+|..... ...|++++|+|||++|++++. ||+|+|||+.+|+++.++.+| ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h~~----- 295 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFAKFNED----- 295 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECCCCSSS-----
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-----------CceEEEEcCccHhHhhhhhcccCC-----
Confidence 88999999975100 001899999999999999987 999999999999999999998 76
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc-EEe
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL-VHV 461 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt-Vrl 461 (464)
.|++++ |||+.||+|+.||+ .+.
T Consensus 296 -----------------------------~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 296 -----------------------------SVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp -----------------------------EEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred -----------------------------CceEec--CCCCeEEEEecCCccccc
Confidence 899999 99999999999999 443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=322.04 Aligned_cols=251 Identities=10% Similarity=0.161 Sum_probs=202.7
Q ss_pred cCceEEEEeCC-CCcEEEEecCCCcEEEEeCCC---Ce---EEEEe-cCCCEeEEEEeCC--------CceeEEEEEcC-
Q 012410 186 KWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKN---YT---MLYSI-SDKHVQEIKIRSS--------SHVPLKILSIE- 248 (464)
Q Consensus 186 ~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~t---g~---~l~tl-~~~~V~~Vafs~s--------~d~tIklWdi~- 248 (464)
+.+.+|+|+ | ||++||+|+.|++|+|||+.+ +. +..++ +...|.+|+|+|+ .|++|+|||++
T Consensus 64 ~~V~~~~~s-~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 64 NSITSSAVS-PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp SCEEEEEEE-CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CceEEEEEC-CCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 445589998 8 999999999999999999987 44 33343 4678999999883 78999999994
Q ss_pred --CCcEEEEEeeCCcceeeEEEEc---------------cCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEE
Q 012410 249 --DGTVLKVFYHLLHRNKKVDFIE---------------QFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAF 309 (464)
Q Consensus 249 --tG~~l~tl~~~~~~~~~V~F~~---------------~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv 309 (464)
+|++++++.. +.+..+.|.| .++..+++++.|++|+|||+++++++.++.+ |...|.++
T Consensus 143 ~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 143 YQQESEVKFLNC--ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEETTEEEEEEE--EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred ccCCceeecccc--ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 8998888774 3455555443 2355677789999999999999999999998 88999999
Q ss_pred EEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEE----EECCCCCEEEEEecCCCccccccCCCCe
Q 012410 310 IFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNI----YITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 310 ~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~sv----afSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+|+|++++|++++ |++|+|||+ +|+++.++. +|... |.++ +|+|||++|++|+. ||+
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~s~~~~~l~s~~~-----------dg~ 284 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-----ITHVEVCQFYGKNSVIVVGGSS-----------KTF 284 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-----EEEEEECTTTCTTEEEEEEEST-----------TEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-----eEEEEeccccCCCccEEEEEcC-----------CCc
Confidence 9999999999999 999999999 699999997 77766 8899 55568999999987 999
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
|+|||+.+|+|+.++.+|...+....+++.+..+... .+. .......|++++|+ +++.|+||+.|++|++|
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~--~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL------NFC--GIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC------CCC--CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccc------eec--ccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 9999999999999999998755555555443221000 000 01233479999999 88999999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 356 d~ 357 (437)
T 3gre_A 356 SL 357 (437)
T ss_dssp ET
T ss_pred EC
Confidence 84
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=305.25 Aligned_cols=275 Identities=10% Similarity=0.078 Sum_probs=232.3
Q ss_pred cceEEEEeccceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeC----C---CEEEEEEeecCCCC
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKN----N---DSLITVSVYASDNF 155 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~----g---~~l~svSa~~sddf 155 (464)
..|..+.+..++|++++.+|.+++|+..+++ .+..+. .|...|.++.|+|+ | +.|++++ .|
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~----~d- 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS----FS- 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE----TT-
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc----CC-
Confidence 4677777778999999999999999999888 788884 58888999999999 9 9998844 45
Q ss_pred cccceeeEEEEEeccCCC-----CCcccceeecc--ccCceEEEEeC---CCCcE-EEEecCCCcEEEEeCCC------C
Q 012410 156 SSLKCRSTKIEYIRRGKP-----DSGFALFESES--LKWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------Y 218 (464)
Q Consensus 156 s~L~~~ti~l~~i~~G~~-----~~~~~l~~~~~--~~~~~~VaFs~---pdGk~-LaSgs~D~tiKlWdl~t------g 218 (464)
+++++|++.+++. ...+..++. + ...+.+++|++ |+|+. |++++.|++|++||+.+ +
T Consensus 91 -----g~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 91 -----GDLLFYRITREDETKKVIFEKLDLLDS-DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp -----SCEEEEEEEECTTTCCEEEEEECCSCT-TGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred -----CCEEEEEccCCcccccccceeeccccc-ccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 6999999999886 333332210 0 13455899962 69999 99999999999999998 7
Q ss_pred eEEE-----Ee---------cCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee---C---CcceeeEEEEcc
Q 012410 219 TMLY-----SI---------SDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH---L---LHRNKKVDFIEQ 271 (464)
Q Consensus 219 ~~l~-----tl---------~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~---~---~~~~~~V~F~~~ 271 (464)
+++. ++ +...|.+++|+|+ .|+.|++||+++++++.++.. | ...+.+++|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 7665 65 3567999999874 688999999999999999987 6 788999999984
Q ss_pred CCCeEEEEeCC---CeEEEEECCCCcEEEEccc-------------CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 272 FNEKLLVKQEN---ENLQILDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 272 ~~~~lla~s~D---~tIkIWDv~tg~~l~~l~g-------------h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
+..+++++.| ++|+|||+++++++..+.+ |...|.+++|+|+|++|++++ |++|+|||+ ++
T Consensus 245 -~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 -GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred -CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6777778899 9999999999999999999 999999999999999999999 999999999 69
Q ss_pred ceEEEec------cC---------------CCCcCCCCeeEEEECCCC----------CEEEEEecCCCccccccCCCCe
Q 012410 334 ELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 334 e~l~tl~------gH---------------~~~~~~~~v~svafSpDg----------~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+++.++. +| ... |++++|+||| ++|++++. ||+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~~g~~~~~~~~~~~~l~s~~~-----------dg~ 387 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLKKGWRSGMGADLNESLCCVCL-----------DRS 387 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEECTTTSBSTTCTTSCEEEEEET-----------TTE
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEeccccccccccccccceEEEecC-----------CCc
Confidence 9999999 88 666 8999999999 79999987 999
Q ss_pred EEEEeCCCCe
Q 012410 383 INVSSILTGK 392 (464)
Q Consensus 383 IklWdi~tG~ 392 (464)
|+|||+.+|+
T Consensus 388 i~iw~~~~g~ 397 (397)
T 1sq9_A 388 IRWFREAGGK 397 (397)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEcCCCC
Confidence 9999998875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=291.10 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=201.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc-cceeeccccCceEEEEeCC--CCcEEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF-ALFESESLKWPGFVEFDDV--NGKVLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~-~l~~~~~~~~~~~VaFs~p--dGk~La 202 (464)
.+|.+.|.++.|+|+|+.|+++ +.| ++++||++.++...... ..+. .+...+.+++|+ | ||++|+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATC----SSD------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWA-SPEYGRIIA 75 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEE----ETT------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEEC-CGGGCSEEE
T ss_pred cccccceeEEEEcCCCCEEEEe----eCC------CeEEEEECCCCCCcceecceec-cCCCcEEEEEEc-CCCCCCEEE
Confidence 6799999999999999999994 455 79999999877532111 1111 133445589998 6 699999
Q ss_pred EecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEEEeC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQE 281 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla~s~ 281 (464)
+|+.|++|+|||+.+++... . ....+++.++..+...+.+++|+|.. +..+++++.
T Consensus 76 s~~~dg~v~vwd~~~~~~~~--------------~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEEC--------------S---------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp EEETTSCEEEEEECTTSCTT--------------S---------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEcCCCeEEEEecCCCcccc--------------c---------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 99999999999998764310 0 00113455555555778889998843 567888899
Q ss_pred CCeEEEEECCCCcEEEEcc-------------cCCCceEEEEEcCC---CcEEEEEe-CCeEEEEeC-CCce--EEEecc
Q 012410 282 NENLQILDVRNAELMEVSR-------------TEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNF-RGEL--VTSFED 341 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~-------------gh~~~v~sv~Fspd---gqllaS~s-D~TIklWd~-~Ge~--l~tl~g 341 (464)
|++|+|||+++++++..+. +|...+.+++|+|+ +++|++++ |+.+.+|+. .++. +.++.+
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG 212 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC
Confidence 9999999999998765443 68889999999998 99999999 999988887 4665 889999
Q ss_pred CCCCcCCCCeeEEEECCCC----CEEEEEecCCCccccccCCCCeEEEEeCCCC--------------------------
Q 012410 342 HLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILTG-------------------------- 391 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg----~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------------------------- 391 (464)
|... |.+++|+|+| ++||+|+. ||+|+|||+.++
T Consensus 213 h~~~-----i~~~~~~p~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 213 HKSL-----IRSISWAPSIGRWYQLIATGCK-----------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA 276 (351)
T ss_dssp CCSC-----EEEEEECCCSSCSSEEEEEEET-----------TSCEEEEEEEECC-------------------------
T ss_pred CCcc-----eeEEEECCCCCCcceEEEEEcC-----------CCeEEEEeCCCCcCccccCCcccceeccCCCccccccc
Confidence 9988 8999999999 89999987 999999999887
Q ss_pred --------------------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 392 --------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 392 --------------------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+++.++.+|.. .|++|+|+|||+.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------------------------~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNG----------------------------------EVWSVSWNLTGTILS 322 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSS----------------------------------CEEEEEECSSSCCEE
T ss_pred ccccccccceeeeecccccccEEEEEecccc----------------------------------cEEEEEEcCCCCEEE
Confidence 45555555543 899999999999999
Q ss_pred EeeCCCcEEecc
Q 012410 452 TGNRHGLVHVWS 463 (464)
Q Consensus 452 Sgs~DgtVrlWd 463 (464)
||+.||+|+|||
T Consensus 323 s~~~dg~v~iw~ 334 (351)
T 3f3f_A 323 SAGDDGKVRLWK 334 (351)
T ss_dssp EEETTSCEEEEE
T ss_pred EecCCCcEEEEe
Confidence 999999999998
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=299.98 Aligned_cols=274 Identities=11% Similarity=0.090 Sum_probs=220.3
Q ss_pred cceEEEEec--c-ceeehhcc---CCeEEeeecccccEeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccc
Q 012410 89 TKVIEIVAA--R-DIVFALAH---SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 89 s~v~~~~~a--g-~~l~~l~~---~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~ 159 (464)
..|..+.+. | .++++.+. +|.+++|++.+++........|...|.++.|+|+ |..|+++ +.|
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~d----- 89 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG----DFG----- 89 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE----ETT-----
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe----cCC-----
Confidence 456666665 4 56667766 9999999999999877766678889999999999 6999884 455
Q ss_pred eeeEEEEEeccCC-CCCcccceeeccccCceEE------EEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec------
Q 012410 160 CRSTKIEYIRRGK-PDSGFALFESESLKWPGFV------EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS------ 225 (464)
Q Consensus 160 ~~ti~l~~i~~G~-~~~~~~l~~~~~~~~~~~V------aFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~------ 225 (464)
+++++|++.+++ +...+..+. ..+..+ +|+ |+|+.|++|+.|++|+|||+.+++ ++.++.
T Consensus 90 -g~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~s-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 90 -GNLHIWNLEAPEMPVYSVKGHK----EIINAIDGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp -SCEEEECTTSCSSCSEEECCCS----SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred -CeEEEEeCCCCCccEEEEEecc----cceEEEeeccccccC-CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 699999999988 544433333 233356 455 899999999999999999999987 666664
Q ss_pred CCCEeEEEE----eC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--CCCeEEEEeCCCeEEEEECC
Q 012410 226 DKHVQEIKI----RS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ~~~V~~Vaf----s~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--~~~~lla~s~D~tIkIWDv~ 291 (464)
...|++++| +| +.|+.|++||+++++++....+ ...+.+++|+|. +++.+++++.|++|+|||++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 137999994 44 3678999999999998766554 478899999984 46788889999999999999
Q ss_pred CCcEEEEcc-----cCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CC-------------------ceEEEeccCCC
Q 012410 292 NAELMEVSR-----TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RG-------------------ELVTSFEDHLL 344 (464)
Q Consensus 292 tg~~l~~l~-----gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~G-------------------e~l~tl~gH~~ 344 (464)
+++++..+. +|...|.+++|+|+++ +|++++ |++|+|||+ .+ +++.++.+|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 988665544 9999999999999999 899999 999999998 33 57889999998
Q ss_pred CcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 345 WHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
. |.+++|+|||++|| |++. |++|+|||+.+.++|
T Consensus 323 ~-----v~~~~~s~~~~~l~~s~~~-----------d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 323 P-----ISSLDWSPDKRGLCVCSSF-----------DQTVRVLIVTKLNKI 357 (357)
T ss_dssp C-----EEEEEECSSSTTEEEEEET-----------TSEEEEEEECC----
T ss_pred C-----eeEEEEcCCCCeEEEEecC-----------CCcEEEEECCCcccC
Confidence 7 89999999999998 8886 999999999887653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=301.31 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=224.5
Q ss_pred ccceEEEEec------cceeehhccCCeEEeeecccccEeeEeec----CCCceEEEEEEeeC----CCEEEEEEeecCC
Q 012410 88 RTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKN----NDSLITVSVYASD 153 (464)
Q Consensus 88 ~s~v~~~~~a------g~~l~~l~~~g~~~~~~~~~g~~l~~ln~----~~~~~i~Sv~fs~~----g~~l~svSa~~sd 153 (464)
..+|..+.+. ...+++.+.++.+++|+..+++.+..+.. .|...|.+++|+|+ |..|+++ +.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----~~ 93 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA----GS 93 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE----ET
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe----cC
Confidence 3467777776 45677777788999999998998877753 25577999999999 6688883 45
Q ss_pred CCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEe-----cCC
Q 012410 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDK 227 (464)
Q Consensus 154 dfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl-----~~~ 227 (464)
| ++++||++.++++...+..+. ..+..++|+ | +|++|++|+.|++|+|||+.+++++..+ +..
T Consensus 94 d------g~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 R------GIIRIINPITMQCIKHYVGHG----NAINELKFH-PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp T------CEEEEECTTTCCEEEEEESCC----SCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred C------CEEEEEEchhceEeeeecCCC----CcEEEEEEC-CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 5 799999999998765443333 445589997 7 9999999999999999999999999987 257
Q ss_pred CEeEEEEeCC--------CceeEEEEEcCCCcEEEEEee----------------------------CCcceeeEEEEcc
Q 012410 228 HVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYH----------------------------LLHRNKKVDFIEQ 271 (464)
Q Consensus 228 ~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~----------------------------~~~~~~~V~F~~~ 271 (464)
.|.+++|+|+ .|++|++||+.+++++.++.. +...+.+|+|+
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 8999999884 688999999999987765543 66788999997
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcE--------------EEEcccCCCceEEEEEcCC--CcEEEEEe-CCeEEEEeC-CC
Q 012410 272 FNEKLLVKQENENLQILDVRNAEL--------------MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~--------------l~~l~gh~~~v~sv~Fspd--gqllaS~s-D~TIklWd~-~G 333 (464)
++.+++++.|++|++||+.++++ +..+.+|...|++++|+|+ |++|++++ |++|++||+ +|
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 47888899999999999999855 8889999999999999999 99999999 999999999 57
Q ss_pred c----eEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 334 E----LVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 334 e----~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+ .+.++.+| ... |++++|+|||++||+++. ||+|+|||+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~-----------dg~i~iwd~~~ 366 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAA-----IRQTSFSRDSSILIAVCD-----------DASIWRWDRLR 366 (366)
T ss_dssp SGGGCEEEEECCTTCCSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEEC--
T ss_pred CCccccceEEcccccCCc-----eEEEEeCCCCCeEEEEeC-----------CCEEEEEEecC
Confidence 6 45589998 455 899999999999999987 99999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=282.93 Aligned_cols=270 Identities=13% Similarity=0.186 Sum_probs=221.7
Q ss_pred ceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 90 KVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 90 ~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
.|..+.+. +++|++++.+|.+++|++.+++.+..+.. |...|.++.|+|+|+.|++++ .+ +.+++|++
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~d------g~i~~~~~ 88 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGG----KD------TMINGVPL 88 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEE----TT------SCEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEec----CC------CeEEEEEe
Confidence 45555444 88999999999999999999998888855 788899999999999999944 45 68999998
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------C
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------S 237 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s 237 (464)
...........+. .+...+..++| +++.|++++.|++|++|| +++++..+. ...|.+++|.| +
T Consensus 89 ~~~~~~~~~~~~~-~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 89 FATSGEDPLYTLI-GHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp TCCTTSCC-CEEC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred eecCCCCcccchh-hcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 6654322111111 12233447888 467999999999999999 777777665 57899999976 3
Q ss_pred CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++|| .++++.++.. +...+..++|+|. +.+++++.|++|++||+++++++..+.+|...|.+++|+|+|+
T Consensus 163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDD--GHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC
T ss_pred CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCC--CeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC
Confidence 778999999 5788888885 6678899999995 5688899999999999999999999999999999999999995
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
|++++ |++|++||+ +|+++.++..|... |.+++|+|||+++ +++. ||+|+|||+.+++++
T Consensus 239 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~-~~~~-----------dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 239 -IVSCGEDRTVRIWSKENGSLKQVITLPAIS-----IWSVDCMSNGDII-VGSS-----------DNLVRIFSQEKSRWA 300 (313)
T ss_dssp -EEEEETTSEEEEECTTTCCEEEEEECSSSC-----EEEEEECTTSCEE-EEET-----------TSCEEEEESCGGGCC
T ss_pred -EEEEecCCEEEEEECCCCceeEEEeccCce-----EEEEEEccCCCEE-EEeC-----------CCcEEEEeCCCCcee
Confidence 77777 999999999 79999999999877 8999999999955 5665 999999999999887
Q ss_pred EEEc
Q 012410 395 AKIN 398 (464)
Q Consensus 395 ~tl~ 398 (464)
....
T Consensus 301 ~~~~ 304 (313)
T 3odt_A 301 SEDE 304 (313)
T ss_dssp C---
T ss_pred ehhh
Confidence 6543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=313.76 Aligned_cols=224 Identities=10% Similarity=0.072 Sum_probs=190.8
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCC--eEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCc---
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGT--- 251 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg--~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~--- 251 (464)
.+.+|+|+ |||++||+|+.|++|+|||+.++ +++.++. ...|.+|+|+|+ .|++|+|||+++++
T Consensus 13 ~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 13 PSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred cEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence 34589997 89999999999999999999998 6777776 568999999984 68999999999998
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
++.++..|...+.+++|+| ++..+++++.|++|+|||+.+++ +++.+.+ |...|.+++|+|++++|++++ |++|
T Consensus 92 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 6667776668899999999 46788889999999999999998 4778887 999999999999999999999 9999
Q ss_pred EEEeCC-------------------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 327 AVWNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 327 klWd~~-------------------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++||+. |+++.++ +|..+ |.+++|+|||++||+++. |++|+|||
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----v~~~~~sp~~~~l~~~~~-----------d~~i~iwd 233 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-----VHAVGFSPSGNALAYAGH-----------DSSVTIAY 233 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-----EEEEEECTTSSCEEEEET-----------TTEEC-CE
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCce-----EEEEEECCCCCEEEEEeC-----------CCcEEEEE
Confidence 999973 7788899 99988 899999999999999987 99999999
Q ss_pred CCCCeE----EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 388 ILTGKC----LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 388 i~tG~c----l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.++++ +.++.+|.. .|++++|+|||+.|++|+.|+.+.+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL----------------------------------PLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECSTTSCEEECCCEECSSS----------------------------------CEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred CCCCCCcceeeEeecCCCC----------------------------------ceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 999998 899999986 899999999999999999888885543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=327.71 Aligned_cols=270 Identities=11% Similarity=0.126 Sum_probs=221.7
Q ss_pred ceEEEEec---cceeehhccCCeEEeeeccc-----ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~-----g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..+.+. +++|++++.||++++|++.+ +.....+ .+|...|.+|.|+|+|+.|++ ++.| +
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s----gs~D------g 452 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALS----GSWD------G 452 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEE----EETT------S
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEE----EeCC------C
Confidence 34455444 57999999999999999765 3455667 458999999999999999999 4456 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEe
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIR 235 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs 235 (464)
+++|||+.+|++...+..|+ ..+.+|+|+ |+|+.|+|||.|++|||||+.. .+..++. ...|.+++|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~----~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHT----KDVLSVAFS-LDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEEEEETTTTEEEEEEECCS----SCEEEEEEC-TTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEEC
T ss_pred cEEEEECCCCcceeEEeCCC----CCEEEEEEe-CCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEe
Confidence 99999999998754444333 334589997 8999999999999999999865 4444442 3569999998
Q ss_pred CC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 236 SS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 236 ~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
|+ .|++|+|||+.+++++.++.+|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+ ..
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 74 588999999999999999998778999999999 4667777899999999999999999988766 57
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCc--------------CCCCeeEEEECCCCCEEEEEecCC
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWH--------------PDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~--------------~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
+.+++|+|++.+|++++|+.|+|||+ +++++.++..|.... .-..+.+++|||||++|+|||.
T Consensus 605 v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-- 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT-- 682 (694)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET--
T ss_pred EEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC--
Confidence 99999999999999888889999999 699999887543210 0012678999999999999997
Q ss_pred CccccccCCCCeEEEEeCC
Q 012410 371 PEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~ 389 (464)
||+|+|||+.
T Consensus 683 ---------Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 ---------DGVIRVWGIG 692 (694)
T ss_dssp ---------TSEEEEEEC-
T ss_pred ---------CCeEEEEecc
Confidence 9999999984
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=290.43 Aligned_cols=277 Identities=10% Similarity=0.069 Sum_probs=236.6
Q ss_pred cccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 87 ~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
-...|..+.+. |++|++.+.+|.+++|+..+++.+..+. .|...|.++.|+|+|+.|++++ .| ++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~----~d------g~i~ 99 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGS----AD------YSIK 99 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TT------TEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEe----CC------CeEE
Confidence 34567777775 8899999999999999999999999994 5888899999999999999844 45 6999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-----CcEEEEeCCCCeEE-----------EEec--C
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTML-----------YSIS--D 226 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-----~tiKlWdl~tg~~l-----------~tl~--~ 226 (464)
||++.+|++...+. +-..+..++|+ |+|+.|++++.| ++|++||+.++... ..+. .
T Consensus 100 iwd~~~~~~~~~~~-----~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-----SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEE-----CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEee-----cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 99999998754333 22445589997 899999999999 99999999876432 1111 2
Q ss_pred C--CEeEEEEeCC--------CceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE
Q 012410 227 K--HVQEIKIRSS--------SHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 295 (464)
Q Consensus 227 ~--~V~~Vafs~s--------~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~ 295 (464)
. .|..++|+|+ .|+.|++||+.+ ++++.++..+...+.+++|+| ++..|++++.|++|++||+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCce
Confidence 2 7999999873 778999999999 899999997778899999999 466788889999999999999999
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEe-CC--------------eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFR-NR--------------TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~s-D~--------------TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+..+. +...+.+++|+|+++++++++ ++ +|++||. +++++.++.+|... |.+++|+||
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~s~~ 326 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----LNTVAISPQ 326 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----EEEEEECTT
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----EEEEEECCC
Confidence 99888 557899999999999999999 87 8999999 79999999999988 899999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|++||+++. ||+|+|||+.++.....+.
T Consensus 327 ~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 327 GTSYASGGE-----------DGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp SSEEEEEET-----------TSEEEEEEECHHHHTCCCH
T ss_pred CCEEEEEcC-----------CCeEEEEECccccchhHHH
Confidence 999999987 9999999998877655443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.95 Aligned_cols=227 Identities=13% Similarity=0.186 Sum_probs=195.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGT 251 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~ 251 (464)
..+.+++|+ |||++||+|+.|++|+|||+. +++++.++. ...|.+|+|+| +.|++|+|||+++|+
T Consensus 12 ~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 12 ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp CCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred ccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 445589997 899999999999999999998 667777776 46899999974 267899999999998
Q ss_pred --EEEEEeeCCcceeeEEEEccC-CCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCceEEEEEcC-------------
Q 012410 252 --VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY------------- 313 (464)
Q Consensus 252 --~l~tl~~~~~~~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp------------- 313 (464)
++..+..+...+.+++|+|.. +..+++++.|++|++||+.+++ ....+.+|...|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence 777777667889999999853 5678889999999999999984 4456788999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCc----eEEEeccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCCCCeEE
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge----~l~tl~gH~~~~~~~~v~svafSpD---g~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
|+++|++++ |++|+|||+ +++ ++.++.+|... |.+++|+|| +++||+++. ||+|+
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~l~s~~~-----------dg~i~ 234 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ-----------DRTCI 234 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------TSCEE
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-----EeEEEECCCCCCCCeEEEEeC-----------CCEEE
Confidence 799999999 999999998 454 67899999988 899999999 999999987 99999
Q ss_pred EEeCCCCe---EEEEEc--cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 385 VSSILTGK---CLAKIN--ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 385 lWdi~tG~---cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|||+.+++ ....+. +|.. .|++++|+|||+.||+|+.||+|
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPD----------------------------------VLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSS----------------------------------CEEEEEECSSSCCEEEEESSSSE
T ss_pred EEeCCCCCccceeeeeccccCCC----------------------------------cEEEEEEcCCCCEEEEecCCCcE
Confidence 99999874 222222 2443 89999999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
++|+
T Consensus 281 ~iw~ 284 (379)
T 3jrp_A 281 TLWK 284 (379)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=295.73 Aligned_cols=274 Identities=9% Similarity=0.108 Sum_probs=227.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.+|..+.+. |++|++.+.+|.+++|+..+++ .+..+. .|...|.+++|+|+|+.|++++ .| ++++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~----~d------g~i~ 77 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG----TD------RNAY 77 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE----TT------SCEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc----CC------CeEE
Confidence 455556655 8899999999999999988887 888885 4888899999999999999944 55 6999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE---EEEec---CCCEeEEEEeCC-
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS---DKHVQEIKIRSS- 237 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~---l~tl~---~~~V~~Vafs~s- 237 (464)
+|++.++++.....+.. +...+.+++|+ |+|++|++|+.|++|++||+.+++. ...+. ...|.+++|+|+
T Consensus 78 vwd~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILR--INRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEETTEEEEEEECCC--CSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEECCCCeeeeeEEeec--CCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 99998887533222222 22445589997 8999999999999999999998873 34442 467999999884
Q ss_pred -------CceeEEEEEc------------------CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC
Q 012410 238 -------SHVPLKILSI------------------EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 238 -------~d~tIklWdi------------------~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t 292 (464)
.|++|++||+ .+|+++.++..+...+.+++|+| ++..+++++.|++|++||+++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 6789999994 58999999987768899999998 466788899999999999999
Q ss_pred CcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-C--Cc--eE-------------------------------
Q 012410 293 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-R--GE--LV------------------------------- 336 (464)
Q Consensus 293 g~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~--Ge--~l------------------------------- 336 (464)
++++..+.+|...|.+++|+|+|++|++++|++|++||+ + |+ ++
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 999999999999999999999999999888999999999 5 42 11
Q ss_pred -----EEe-ccCCCCcCCCCeeEEE-ECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 337 -----TSF-EDHLLWHPDCNTNNIY-ITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 337 -----~tl-~gH~~~~~~~~v~sva-fSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
..+ .+|... |++++ +++|| ++||||+. ||+|+|||+.+++.
T Consensus 314 ~~~~~~~~~~~h~~~-----v~~~~~~~~~g~~~~~l~s~~~-----------Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRSLES 364 (372)
T ss_dssp -----CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHHHHH
T ss_pred CccccccccccccCC-----cceeEEecCCCcceeeEEEecC-----------CCceEEEEecChhH
Confidence 233 488887 89998 45788 99999997 99999999987653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=333.02 Aligned_cols=295 Identities=9% Similarity=0.027 Sum_probs=227.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+-++ |.+||+.+.|++++ +..+++ .++ +|...|++|+|+|+| .+ ++ |
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~-gh~~~v~~V~FsPdg----------~~-------~~---~ 69 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DIN-CNSKNLFHVKEFPLE----------FE-------NK---L 69 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCS-SBGGGTEEEEEECCC----------CC-------CT---T
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc---eec-CCCccEEEEEECCCC----------Cc-------ce---E
Confidence 355566666 99999999999999 645554 554 688889999999999 12 34 4
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC------CEeEEEEeCC---
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKIRSS--- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~------~V~~Vafs~s--- 237 (464)
++.+++....+.+ .+..++.+|+|| |||+.||+++.|++|+|||.++ ++.++..+ .|.+|+|||+
T Consensus 70 ~~~~~~~~~~~~~---~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 70 DFELAQQNGLLNS---QPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp TTSCCCSSCSSTT---SCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSC
T ss_pred EEEeCCCceEeec---CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCE
Confidence 4444443322221 112556699998 8999999999999999999655 77666522 3999999994
Q ss_pred -----CceeEEEEEcCCCc-------EEEEEe----eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEE
Q 012410 238 -----SHVPLKILSIEDGT-------VLKVFY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEV 298 (464)
Q Consensus 238 -----~d~tIklWdi~tG~-------~l~tl~----~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~ 298 (464)
.|++|+|||+++|. .+.++. +|..+|.+|+|+|+ + +++++.|++||+||+.++++ .++
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g-Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V-LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E-EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC--c-EEEEeCCCeEEEEECCCCccccceee
Confidence 78999999999986 478884 44579999999995 4 88899999999999999884 356
Q ss_pred c-ccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccc
Q 012410 299 S-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 299 l-~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svaf--SpDg~~LaSgs~~~~~~~ 374 (464)
+ .+|...|.+++|+ |+.||+++|++|+|||+.+..+.++. ||... |++|+| +|||+.|+++++
T Consensus 221 L~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-----V~~va~~~s~d~~~La~a~e------ 287 (588)
T 2j04_A 221 IQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-----FHIIPLNHEKESTILLMSNK------ 287 (588)
T ss_dssp EECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-----CCEEEETTCSSCEEEEECSS------
T ss_pred ecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-----EEEEEeeeCCCCCEEEEEcC------
Confidence 7 4888999999999 69999999999999999655553444 99998 889999 999999999986
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccccc------CEEEEEEcCCCC
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE------DITSLFYDEERN 448 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~V~slafspDg~ 448 (464)
||+ |||.... ++ +. +++...|+ .+.+.++|+...+.+. .|++|+|||||+
T Consensus 288 -----dG~-klw~~d~---~~-~s------------pd~~l~a~--~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 288 -----TSY-KVLLEDE---LH-VT------------ADNIIAPY--LEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp -----CEE-EEEESSS---EE-EE------------CCCSSHHH--HHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred -----CCC-EEEeecc---EE-EC------------CCceEEEE--cCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 999 9999752 22 22 22333333 3777778876543333 699999999999
Q ss_pred EEEEeeC
Q 012410 449 EIYTGNR 455 (464)
Q Consensus 449 ~LaSgs~ 455 (464)
+||+++.
T Consensus 344 ~lA~~~~ 350 (588)
T 2j04_A 344 SIAIVYD 350 (588)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=299.69 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=217.8
Q ss_pred cceEEEEec--c-ceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeE
Q 012410 89 TKVIEIVAA--R-DIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 89 s~v~~~~~a--g-~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti 163 (464)
..|..+.+. | ++|++++.+|.+++|++.+++..+.+.. +|...|.++.|+| ++..|+++ +.| +++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~d------~~i 143 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SIR------GAT 143 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE----ETT------TEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE----eCC------CEE
Confidence 455666655 5 7999999999999999999998888863 6889999999999 77888884 455 699
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC----
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---- 237 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---- 237 (464)
+||++.. +....+..+. .+...+.+++|+ |+|++|++|+.|++|++||+ +++++.++. ...|.+|+|+|+
T Consensus 144 ~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTD-SWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEETTS-CEEEEEECCC-CSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEECCC-CceEEEeccC-CCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999874 3322222111 112345589998 89999999999999999999 688888776 578999999884
Q ss_pred -----CceeEEEEEcCC----CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----
Q 012410 238 -----SHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----- 303 (464)
Q Consensus 238 -----~d~tIklWdi~t----G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~----- 303 (464)
.|++|+|||+.+ ++++.++. +...+.+++|+|.++..+++++.|++|+|||+++++++..+.+|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 578999999998 88999885 458899999999446777888999999999999999888777664
Q ss_pred ------------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEe
Q 012410 304 ------------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 304 ------------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~--~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..+..++|+|||++ +++ |++|+|||+ +|+++.+|.+|. .. +..++|+|||++||+|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~-----~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGI-----ISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSC-----CCEEEECTTSSEEEEEE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCce-----EEEEEEecCccEEEEec
Confidence 23445778888887 777 999999999 799999999864 33 66789999999999996
Q ss_pred cCCCccccccCCCCeEEEEeCCC
Q 012410 368 KAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|++|+|||+.+
T Consensus 372 ------------d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 ------------GFNILIWNRED 382 (383)
T ss_dssp ------------TTEEEEEECC-
T ss_pred ------------CCcEEEEecCC
Confidence 89999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=300.52 Aligned_cols=273 Identities=10% Similarity=0.111 Sum_probs=222.4
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
+-..++.+++.+.+|.+++|+..+|+.+..+...|...|.+++|+|+|+.|++++ .+ ++++||++.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~d------g~i~iwd~~~~~~ 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL----GN------GLVDIYDVESQTK 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE----TT------SCEEEEETTTCCE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC----CC------CeEEEEECcCCeE
Confidence 4445566778889999999999999999999888899999999999999999944 45 6999999999987
Q ss_pred CCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEec--CCCEeEEEEeCC--------CceeE
Q 012410 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS--DKHVQEIKIRSS--------SHVPL 242 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~--~~~V~~Vafs~s--------~d~tI 242 (464)
...+..+. ..+.+++|+ +++|++|+.|++|++||+. .+..+.++. ...|.+++|+|+ .|++|
T Consensus 169 ~~~~~~~~----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 169 LRTMAGHQ----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp EEEECCCS----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEecCCC----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 65444333 334478884 5799999999999999999 456666665 578999999884 67999
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-Ee--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
++||+.+++++.++..+...+.+++|+|. +..+++ ++ .|++|++||+.+++++..+.++ ..+.+++|+|+|+.|+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~-~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPW-QSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTT-STTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEECSSSSEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCC-CCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEECCCCCeEE
Confidence 99999999999999877788999999995 445555 44 7999999999999999988754 6799999999999999
Q ss_pred E--Ee-CCeEEEEeC-CCceEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 320 T--FR-NRTVAVWNF-RGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 320 S--~s-D~TIklWd~-~Ge~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+ ++ |++|+|||+ ++++.. .+.+|... |.+++|+|||++|++++. ||+|+|||+.+|++
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~~~-----------dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----VLYSALSPDGRILSTAAS-----------DENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----CCEEEECTTSSEEEEECT-----------TSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCccceeEEEecCCCCC-----EEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCcc
Confidence 9 55 999999999 676655 47799887 889999999999999986 99999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
+.....+.
T Consensus 384 ~~~~~~~~ 391 (401)
T 4aez_A 384 VKRPIPIT 391 (401)
T ss_dssp --------
T ss_pred cccccccc
Confidence 98765544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=283.58 Aligned_cols=259 Identities=10% Similarity=0.148 Sum_probs=210.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+++||++ .|+++++||+.+|+.++.+.. .|...|.+|+|+|+|+.|++ ++.| ++++||++++|++...
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s----gs~D------g~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SEEEEEETTTTEEEEE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE----EECC------CcEEEeecCCceeEEE
Confidence 5777765 589999999999999998864 57788999999999999999 4566 7999999999997654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEec--CCCEeEEEEeC--------CCceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS--DKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~--~~~V~~Vafs~--------s~d~tIklW 245 (464)
+..++.. ..+++ +++++|++|+.|+++++|+..++.. +.++. ...+..+++++ +.|++|+||
T Consensus 105 ~~~h~~~------~~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 105 MTSHSAR------VGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EECCSSC------EEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecCccce------EEEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 4433321 34454 6789999999999999999987654 44554 56788898876 478999999
Q ss_pred EcCCCcEE----EEEeeCCcceeeEEEEccCCCeEEE--EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 246 SIEDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 246 di~tG~~l----~tl~~~~~~~~~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
|+++|+.. .....+...+..++|.+..+..+.. ++.|++|+|||..++++...... ...+..+.|+|+++.++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELI 256 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceE
Confidence 99998754 3333445678999998864443333 45899999999999998877654 46788999999999887
Q ss_pred EE--e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 320 TF--R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 320 S~--s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++ + |++|+|||+ +|+++++|++|... |++++|+|||++|||||. ||+|||||+.+.
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~~v~iWd~~~~ 316 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWRCFEL 316 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEECCSCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEECCCC
Confidence 64 3 999999999 69999999999998 899999999999999997 999999998654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=292.08 Aligned_cols=307 Identities=10% Similarity=0.075 Sum_probs=217.2
Q ss_pred ccceEEEEe---ccceeehhccCCeEEeeecccccEeeEee------------cCCCceEEEEEEee-CCCEEEEEEeec
Q 012410 88 RTKVIEIVA---ARDIVFALAHSGVCAAFSRETNRRICFLN------------VSPDEVIRSLFYNK-NNDSLITVSVYA 151 (464)
Q Consensus 88 ~s~v~~~~~---ag~~l~~l~~~g~~~~~~~~~g~~l~~ln------------~~~~~~i~Sv~fs~-~g~~l~svSa~~ 151 (464)
..+|..+.+ .|++|++++.+|.+++|++.+++.+..+. ..|...|.++.|+| ++..|+++
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---- 118 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS---- 118 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE----
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE----
Confidence 346666766 47999999999999999999988877765 35888999999999 77788883
Q ss_pred CCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC---CCcEEEEecCCCcEEEEeCCCCeEEEEec--C
Q 012410 152 SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV---NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 226 (464)
Q Consensus 152 sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p---dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~ 226 (464)
+.| +++++|++.+++....+. +...+..++|+ | ++.+|++|+.|++|++||+.+++++.++. .
T Consensus 119 ~~d------~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 119 SFD------KTLKVWDTNTLQTADVFN-----FEETVYSHHMS-PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp ETT------SEEEEEETTTTEEEEEEE-----CSSCEEEEEEC-SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred eCC------CeEEEeeCCCCccceecc-----CCCceeeeEee-cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 455 699999999888643222 22344578886 5 55599999999999999999999998886 5
Q ss_pred CCEeEEEEeCC---------CceeEEEEEcCCCc-EEEEE---------------eeCCcceeeEEEEccCCCeEEEEeC
Q 012410 227 KHVQEIKIRSS---------SHVPLKILSIEDGT-VLKVF---------------YHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 227 ~~V~~Vafs~s---------~d~tIklWdi~tG~-~l~tl---------------~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
..|.+++|+|+ .|++|++||+.+++ ++..+ ..+...+.+++|+| ++..+++++.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 265 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGT 265 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEET
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecC
Confidence 68999999884 67899999999876 55665 34556789999999 4667888999
Q ss_pred CCeEEEEECCCCcEEEEcccCC------CceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEE
Q 012410 282 NENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~------~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
|++|++||+.+++.+..+.++. .....+...+.+.+++++.|++|++||+ +|+++.++.+|... |.++
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v~~~ 340 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----VDCC 340 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----EEEE
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----EEEE
Confidence 9999999999999876554432 1222333344555555545999999999 79999999999987 8999
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
+|+|||++||+++. ||+|+|||+.+++++.....+..
T Consensus 341 ~~s~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~-------------------------------- 377 (408)
T 4a11_B 341 VFQSNFQELYSGSR-----------DCNILAWVPSLYEPVPDDDETTT-------------------------------- 377 (408)
T ss_dssp EEETTTTEEEEEET-----------TSCEEEEEECC--------------------------------------------
T ss_pred EEcCCCCEEEEECC-----------CCeEEEEeCCCCCccCCCCceEe--------------------------------
Confidence 99999999999987 99999999999998887655542
Q ss_pred ccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 435 LEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 435 l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
. ..++| +.....+.+.|+.|++|+|
T Consensus 378 ---~--~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 378 ---K--SQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp -------------------------------
T ss_pred ---c--cccccccceeecccCccCceeecCC
Confidence 0 11222 3445567788999999986
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=304.34 Aligned_cols=239 Identities=10% Similarity=0.152 Sum_probs=192.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-----------EEEEecC--------------CCEeEEEEeCC---
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISD--------------KHVQEIKIRSS--- 237 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-----------~l~tl~~--------------~~V~~Vafs~s--- 237 (464)
..+.+|+|+ |||++||+|+.|++|+|||+.+++ ++.++.. ..|.+|+|+|+
T Consensus 29 ~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 29 DIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred CcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 455699997 899999999999999999999887 5666653 45999999874
Q ss_pred -------CceeEEEEEcCCCcEE---------------------------------------EEE-eeCCcceeeEEEEc
Q 012410 238 -------SHVPLKILSIEDGTVL---------------------------------------KVF-YHLLHRNKKVDFIE 270 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l---------------------------------------~tl-~~~~~~~~~V~F~~ 270 (464)
.|++|+|||+.++++. +.+ .+|...+.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 5789999999886653 233 35667889999999
Q ss_pred cCCCeEEEEeCCCeEEEEECC-CCcEEE-------EcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCce----
Q 012410 271 QFNEKLLVKQENENLQILDVR-NAELME-------VSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGEL---- 335 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~-tg~~l~-------~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~---- 335 (464)
+ +..++++ .|++|+|||+. .+++++ .+.+|...|.+++|+|+| ++|++++ |++|+|||+ ++++
T Consensus 188 ~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 188 D-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp T-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred C-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 4 5566666 89999999999 566776 367899999999999999 9999999 999999999 6887
Q ss_pred EEEeccCCC------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCC
Q 012410 336 VTSFEDHLL------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNC 402 (464)
Q Consensus 336 l~tl~gH~~------------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~ 402 (464)
+.+|++|.. . |.+++|+|||++|++++ +++|+|||+.+ ++++.++.+|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~------------~~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISS-----ISDVKFSHSGRYMMTRD------------YLSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp CEEECCC-----CCHHHHHTTC-----EEEEEECTTSSEEEEEE------------SSEEEEEETTCCSSCSCCEESCGG
T ss_pred eeEeccCCCccccccccccCce-----EEEEEECCCCCEEEEee------------CCeEEEEeCCCCccccceeecccc
Confidence 899999986 5 89999999999999986 59999999998 999999999964
Q ss_pred CCCcccccCCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
... .+.. ........+.+++|+|||+.|++|+.||+|+|||.
T Consensus 329 ~~~--------------------~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 329 LRS--------------------KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp GTT--------------------THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ccc--------------------cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 100 0000 00011124556999999999999999999999984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=313.32 Aligned_cols=273 Identities=12% Similarity=0.134 Sum_probs=210.4
Q ss_pred ceEEEEec---cceeehhccCCeEEeeecccccEeeEee-cCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEE
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLN-VSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~~l~~ln-~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.|..+.+. +++||+++.||.|++||+.+++..+.+. .+|...|.+|.|+| ++..|++ ++.| ++++
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s----~s~D------~~v~ 190 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA----SSME------GTTR 190 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE----ECSS------SCEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE----EeCC------CEEE
Confidence 36666664 6799999999999999988887666554 36889999999998 6889998 4566 7999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|||++++.+.. +.... ....+..+++|+ |+|++|++|+.|++|+|||+. ++++.++. ...|.+|+|+|.
T Consensus 191 iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 191 LQDFKGNILRV-FASSD-TINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp EEETTSCEEEE-EECCS-SCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred EeeccCCceeE-EeccC-CCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 99987655421 11111 122344589998 899999999999999999985 56666655 578999999873
Q ss_pred ----CceeEEEEEcCCCcEEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC------
Q 012410 238 ----SHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------ 304 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~------ 304 (464)
.|++|+|||+.+++....+. .|...|.+|+|+| ++..|++++.|++|+|||+.++++...+.+|..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 78999999999887665543 4557889999998 467888899999999999999999988877653
Q ss_pred ceEEEEEcCCCcEEEEEe-------------CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEE-EECCCCCEEEEEec
Q 012410 305 TPSAFIFLYENQLFLTFR-------------NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNI-YITSDQDLIISYCK 368 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-------------D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~sv-afSpDg~~LaSgs~ 368 (464)
.+....|+|++.++++++ +++|+|||. +|+++.++. +|... |.++ +|||||++||||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-----v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-----ISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-----CCCEEEECTTSSCEEEEC-
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-----EEEEEEECCCCCEEEEEc-
Confidence 233455666666666553 368999999 799999875 56666 5666 7999999999986
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
|++|+|||+++|++.
T Consensus 420 -----------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 -----------GYHILIWSQQEARTR 434 (435)
T ss_dssp -----------SSEEEECCCC-----
T ss_pred -----------CCcEEEEECCcCeee
Confidence 789999999999874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=300.05 Aligned_cols=267 Identities=11% Similarity=0.150 Sum_probs=221.4
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
..|..+.+.|++|++++.+|.+++||..+++.+..+. +|...|.++.| +|+.|++ ++.| +++++|++
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s----g~~d------g~i~vwd~ 200 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIIT----GSSD------STVRVWDV 200 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEE----EETT------SCEEEEES
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEE----EcCC------CeEEEEEC
Confidence 3466666679999999999999999999999999994 58888999999 7889988 4455 79999999
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE---EEec--CCCEeEEEEeC------C
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKIRS------S 237 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l---~tl~--~~~V~~Vafs~------s 237 (464)
.+|++...+..+. ..+.+++|+ +..|++|+.|++|++||+.+++.+ ..+. ...|.+++|.+ +
T Consensus 201 ~~~~~~~~~~~h~----~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 273 (435)
T 1p22_A 201 NTGEMLNTLIHHC----EAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 273 (435)
T ss_dssp SSCCEEEEECCCC----SCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEcCCC----CcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEe
Confidence 9999865544443 334478885 359999999999999999988765 3443 56799999854 5
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql 317 (464)
.|++|++||+++|+++.++.++...+.+++|. +..+++++.|++|+|||+++++++.++.+|...|.+++| ++++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 89999999999999999999777888999884 478888999999999999999999999999999999988 8999
Q ss_pred EEEEe-CCeEEEEeC-CCc---------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 318 FLTFR-NRTVAVWNF-RGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 318 laS~s-D~TIklWd~-~Ge---------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
|++++ |++|+|||+ +++ ++.++.+|... |.+++| ||++|+||+. ||+|+||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~s~s~-----------Dg~i~iw 410 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------DDTILIW 410 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------SSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-----eEEEEe--CCCEEEEEeC-----------CCEEEEE
Confidence 99999 999999998 566 99999999998 788998 8999999986 9999999
Q ss_pred eCCCCeEEEEEc
Q 012410 387 SILTGKCLAKIN 398 (464)
Q Consensus 387 di~tG~cl~tl~ 398 (464)
|+.++.......
T Consensus 411 d~~~~~~~~~~~ 422 (435)
T 1p22_A 411 DFLNDPAAQAEP 422 (435)
T ss_dssp C-----------
T ss_pred ECCCCCCcccCC
Confidence 998887665543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.17 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=190.5
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccc--ccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceee
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~--g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~t 162 (464)
..|..+.+. |++|++++.||++++|++.+ ++++.++ .+|...|++|.|+|+ |+.|++ ++.| ++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s----~s~D------~~ 78 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILAS----CSYD------GK 78 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEE----EETT------TE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEE----EcCC------CE
Confidence 356666665 99999999999999999764 4778888 559999999999864 899999 4466 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeE--EEEe--cCCCEeEEEEeC
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTM--LYSI--SDKHVQEIKIRS 236 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~--l~tl--~~~~V~~Vafs~ 236 (464)
++||++.+|+...... +. .+...+.+|+|+ |+ |++|++|+.|++|+|||+.++.. ...+ +...|.+++|+|
T Consensus 79 v~iWd~~~~~~~~~~~-~~-~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAV-HA-VHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp EEEEEBSSSCBCCCEE-EC-CCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred EEEEEcCCCceEEEEE-ee-cCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 9999999886422111 11 122345589997 77 89999999999999999987632 2233 356788888888
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc----EEEEcccCCCceEEEEEc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fs 312 (464)
+.... .+. + . .+.++..|++++.|++|+|||+++++ ++.++.+|...|.+++|+
T Consensus 156 ~~~~~-------~~~------~--~-------~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 156 ATIEE-------DGE------H--N-------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp CC----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred Ccccc-------ccc------C--C-------CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence 63211 010 0 0 01124577779999999999999887 778999999999999999
Q ss_pred CCC---cEEEEEe-CCeEEEEeCC-Cc---eEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 313 YEN---QLFLTFR-NRTVAVWNFR-GE---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 313 pdg---qllaS~s-D~TIklWd~~-Ge---~l~tl--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
|++ ++|||++ |++|+|||++ ++ ....+ .+|..+ |++++|+|||++||+++. |++
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~las~~~-----------D~~ 277 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNK 277 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEET-----------TSC
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECCCCCEEEEEcC-----------CCc
Confidence 995 8999999 9999999984 32 23345 567666 899999999999999987 999
Q ss_pred EEEEeCC
Q 012410 383 INVSSIL 389 (464)
Q Consensus 383 IklWdi~ 389 (464)
|+||+..
T Consensus 278 v~lw~~~ 284 (297)
T 2pm7_B 278 VTLWKEN 284 (297)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999976
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=282.14 Aligned_cols=268 Identities=12% Similarity=0.112 Sum_probs=222.9
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+-++++.+.++.+++||..+|+.+..+.. |.. +.+++|+|+|+.|+.++ +.+ +++++||+.+|++...+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~-~~~~~~s~dg~~l~~~~---~~d------~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPV-GSN-PMGAVISPDGTKVYVAN---AHS------NDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEEC-SSS-EEEEEECTTSSEEEEEE---GGG------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeec-CCC-cceEEECCCCCEEEEEC---CCC------CeEEEEECCCCeEEEEE
Confidence 35677888999999999999999999854 555 89999999999875533 334 69999999999875332
Q ss_pred cceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWd 246 (464)
.. -..+..++|+ |||+.| ++++.|++|++||+.+++++..+. ...+.+++|+|+ .+++|++||
T Consensus 71 ~~-----~~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 71 PA-----GSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EC-----SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EC-----CCCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 21 1356689997 899977 466678999999999999998776 567999999874 578999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--- 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--- 322 (464)
+.+|+++.++..+ ..+..++|+|+ +..+++ ++.|++|++||+++++++..+..+ ..+.+++|+|+|+.|++++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCcEEEEEecC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccceEECCCCCEEEEEecCc
Confidence 9999999999854 55689999984 556644 568999999999999999888755 5789999999999888775
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|++|++||+ +|+++.++..|.. +.+++|+|||++| ++++. |++|++||+.+|++++++..
T Consensus 222 ~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~-----------d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------XNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCC-----------CCEEEEEECCCCcEEEEEEC
Confidence 789999999 6999999998864 6789999999988 56554 99999999999999999998
Q ss_pred CCC
Q 012410 400 TNC 402 (464)
Q Consensus 400 h~~ 402 (464)
|..
T Consensus 285 ~~~ 287 (391)
T 1l0q_A 285 GKN 287 (391)
T ss_dssp SSS
T ss_pred CcC
Confidence 875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=296.50 Aligned_cols=234 Identities=10% Similarity=0.104 Sum_probs=180.9
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-------- 236 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-------- 236 (464)
||.+.++++......+. ..+.+|+|+ |||++||+|+.| .++|||+.+++++.......+..+++.+
T Consensus 3 i~s~~~~~~~~~~~~h~----~~V~~v~fs-~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS----NPVTDYEFN-QDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------C----CCCCEEEEC-TTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCC----CceEEEEEC-CCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEE
Confidence 45556666543333333 334499997 899999999877 5899999999988766544455555543
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCC
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspd 314 (464)
+.|++|+|||+++|+++.++.+. ..+.+|+|++ +.++++ .|++|+|||+.++ +++.++.+ ....++|+|
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVD-APVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECS-SCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred ECCccEEEEEECCCCcEEEEEECC-CceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 46789999999999999999865 6889999976 344444 4889999999999 77776665 344566888
Q ss_pred CcEEEE--Ee-CCeEEEEeC-CCc----------------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 315 NQLFLT--FR-NRTVAVWNF-RGE----------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 315 gqllaS--~s-D~TIklWd~-~Ge----------------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
+++|. ++ |++|+|||+ +++ ++.++.+|... |++++|+|||++|||||.
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~-----v~~~~~s~~g~~l~s~s~------ 215 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP-----IKMVRLNRKSDMVATCSQ------ 215 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC-----EEEEEECTTSSEEEEEET------
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc-----eEEEEECCCCCEEEEEeC------
Confidence 55555 46 999999999 465 48899999988 899999999999999997
Q ss_pred cccCCCCe-EEEEeCCCCeEEEEEc-c-CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 375 WMEGSAGS-INVSSILTGKCLAKIN-A-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 375 ~~~s~Dgt-IklWdi~tG~cl~tl~-g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
|++ |+|||+.+|+|+.++. | |.. .|++|+|+|||+.||
T Consensus 216 -----d~~~v~iwd~~~~~~~~~~~~g~h~~----------------------------------~v~~~~~s~~~~~l~ 256 (355)
T 3vu4_A 216 -----DGTIIRVFKTEDGVLVREFRRGLDRA----------------------------------DVVDMKWSTDGSKLA 256 (355)
T ss_dssp -----TCSEEEEEETTTCCEEEEEECTTCCS----------------------------------CEEEEEECTTSCEEE
T ss_pred -----CCCEEEEEECCCCcEEEEEEcCCCCC----------------------------------cEEEEEECCCCCEEE
Confidence 999 9999999999999998 6 876 899999999999999
Q ss_pred EeeCCCcEEeccC
Q 012410 452 TGNRHGLVHVWSN 464 (464)
Q Consensus 452 Sgs~DgtVrlWd~ 464 (464)
||+.|++|+|||.
T Consensus 257 s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 257 VVSDKWTLHVFEI 269 (355)
T ss_dssp EEETTCEEEEEES
T ss_pred EEECCCEEEEEEc
Confidence 9999999999984
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=300.75 Aligned_cols=275 Identities=11% Similarity=0.123 Sum_probs=221.5
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC---CCCcccceee-------------------------
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PDSGFALFES------------------------- 182 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~---~~~~~~l~~~------------------------- 182 (464)
.+.+|.|+|+|+.|+++ .+ ..+.+|++.+|+ .....+....
T Consensus 6 p~~~v~~s~dg~~l~~~----~~-------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI----IK-------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEECSSSSEEEEE----ET-------TEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEecCCCCEEEEE----eC-------CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 46889999999976662 23 489999999998 4322211100
Q ss_pred -------------------------ccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCC--CCeEEEEec----CCCEe
Q 012410 183 -------------------------ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKHVQ 230 (464)
Q Consensus 183 -------------------------~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~--tg~~l~tl~----~~~V~ 230 (464)
.+.+.+.+++|+ |||+.| |+|+.|++|+|||+. +++++..+. ...|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp -------------------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred ccccCcCccccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce
Confidence 011245689997 899996 999999999999999 899988764 47899
Q ss_pred EEEEeCC--------CceeEEEEEcCCCcEEE----EEeeCCcceeeEEEEcc-C-CCeEEEEeCCCeEEEEECCCCcEE
Q 012410 231 EIKIRSS--------SHVPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQ-F-NEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 231 ~Vafs~s--------~d~tIklWdi~tG~~l~----tl~~~~~~~~~V~F~~~-~-~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
+|+|+|+ .++.|++|++.+++... ++.+|...+.+|+|+|+ + +..|++++.|++|+|||+.+++++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999984 66889999999998665 77777788999999994 1 456777899999999999999998
Q ss_pred EE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC--------------------CcCCCCeeE
Q 012410 297 EV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL--------------------WHPDCNTNN 353 (464)
Q Consensus 297 ~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~--------------------~~~~~~v~s 353 (464)
.. +.+|...|.+++|+ ||++|+|++ |++|+|||+ +|+++.++..|.. ...+..|.+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 87 77999999999999 999999999 999999999 6999999975420 001123889
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCC---eEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
++|+|||++|++++. .|++|+|||+ .++ +++.++.+| .
T Consensus 313 i~~~~~~~~l~~~~~----------~d~~i~iw~~~~~~~~~l~~~~~~~~~-~-------------------------- 355 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVE----------ATKCIIILEMSEKQKGDLALKQIITFP-Y-------------------------- 355 (450)
T ss_dssp EEECSSSSEEEEEET----------TCSEEEEEEECSSSTTCEEEEEEEECS-S--------------------------
T ss_pred EEEeCCCCEEEEEEC----------CCCeEEEEEeccCCCCceeeccEeccC-C--------------------------
Confidence 999999999999983 2999999999 787 899999988 4
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeC------CCcEEecc
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNR------HGLVHVWS 463 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~------DgtVrlWd 463 (464)
.|++++|+|++..++.++. +..|+||.
T Consensus 356 --------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 356 --------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp --------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred --------ceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 7999999997666665554 55688885
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=300.38 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=167.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--E---e--cCCCEeEEEEeC----------------CCceeEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--S---I--SDKHVQEIKIRS----------------SSHVPLKILS 246 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--t---l--~~~~V~~Vafs~----------------s~d~tIklWd 246 (464)
.+.| ++++++||+|+.|+||||||++++++.. . + +.+.|++|+|+| +.|++|||||
T Consensus 94 ~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 94 VNSS-PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ---C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eeec-CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 3445 5899999999999999999999998753 2 2 256899999975 3899999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-------------------------cc
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------------------RT 301 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-------------------------~g 301 (464)
++++.++.++..+...+.+|+|+|.+...|++++.|++|+|||++++++...+ .+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 99998888877666889999999953346777899999999999999865432 46
Q ss_pred CCCceEEEEEc-CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-------------------
Q 012410 302 EFMTPSAFIFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD------------------- 359 (464)
Q Consensus 302 h~~~v~sv~Fs-pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD------------------- 359 (464)
|...+.++.|+ |||+.|++++ |++|++||+ .++....|.+|... ++.+.++|+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEEEccccccccccCcceeEEEccCC
Confidence 77788899987 8999999999 999999999 69999999988876 455555553
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 360 -QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 360 -g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
+.++++|+. ||+|+|||+.+|+++.++.+|.. .|
T Consensus 328 ~~~~~~sgs~-----------Dg~V~lwd~~~~~~~~~~~~~~~----------------------------------~V 362 (393)
T 4gq1_A 328 MDYFATAHSQ-----------HGLIQLINTYEKDSNSIPIQLGM----------------------------------PI 362 (393)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTCTTCCEEEEECSS----------------------------------CE
T ss_pred CCEEEEEECC-----------CCEEEEEECCCCcEEEEecCCCC----------------------------------cE
Confidence 346667665 99999999999999999999986 89
Q ss_pred EEEEEcCCCCEEEEeeCCCc--EEec
Q 012410 439 TSLFYDEERNEIYTGNRHGL--VHVW 462 (464)
Q Consensus 439 ~slafspDg~~LaSgs~Dgt--VrlW 462 (464)
++|+|||||+.||+|++||. ||||
T Consensus 363 ~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999999999999999886 4554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=285.14 Aligned_cols=248 Identities=9% Similarity=0.041 Sum_probs=196.5
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCcccceeeccccCceEEEEeC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDD 195 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~~~l~~~~~~~~~~~VaFs~ 195 (464)
|+++..++. |...|.+++|+|+|+.|+++ +.| ++++||++. ++++...+..| ...+.+++|+
T Consensus 1 G~~~~~~~~-h~~~v~~~~~s~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~- 64 (379)
T 3jrp_A 1 GSMVVIANA-HNELIHDAVLDYYGKRLATC----SSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWA- 64 (379)
T ss_dssp ----CCEEE-CCCCEEEEEECSSSSEEEEE----ETT------SCEEEEEEETTEEEEEEEECCC----SSCEEEEEEC-
T ss_pred CCccEEecC-CcccEEEEEEcCCCCEEEEE----ECC------CcEEEEecCCCcceeeeEecCC----CCcEEEEEeC-
Confidence 456677744 88999999999999999994 455 699999997 44433222222 2344589997
Q ss_pred CC--CcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC----------CceeEEEEEcCCCcE--EEEEe
Q 012410 196 VN--GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS----------SHVPLKILSIEDGTV--LKVFY 257 (464)
Q Consensus 196 pd--Gk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s----------~d~tIklWdi~tG~~--l~tl~ 257 (464)
|+ |++|++|+.|++|+|||+.+++ ++..+. ...|.+++|+|+ .|++|++||+.+++. ...+.
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence 56 9999999999999999999997 566665 578999999874 578999999998844 34455
Q ss_pred eCCcceeeEEEEcc------------CCCeEEEEeCCCeEEEEECCCCc----EEEEcccCCCceEEEEEcCC---CcEE
Q 012410 258 HLLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYE---NQLF 318 (464)
Q Consensus 258 ~~~~~~~~V~F~~~------------~~~~lla~s~D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fspd---gqll 318 (464)
.+...+.+++|+|. ++..+++++.|++|+|||+++++ ++..+.+|...|.+++|+|+ +++|
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 66678899999984 46778889999999999998875 66788999999999999999 9999
Q ss_pred EEEe-CCeEEEEeC-CCc---eEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 319 LTFR-NRTVAVWNF-RGE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge---~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++++ |++|+|||+ +++ ....+. +|... |++++|+|||++||+++. ||+|+|||+.++
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~~-----------dg~i~iw~~~~~ 288 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLE 288 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEES-----------SSSEEEEEEEET
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEeCCCC
Confidence 9999 999999999 454 333333 36655 899999999999999987 999999999866
Q ss_pred eEEEEE
Q 012410 392 KCLAKI 397 (464)
Q Consensus 392 ~cl~tl 397 (464)
.....+
T Consensus 289 ~~~~~~ 294 (379)
T 3jrp_A 289 GKWEPA 294 (379)
T ss_dssp TEEEEE
T ss_pred Cccccc
Confidence 544433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=295.37 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=209.0
Q ss_pred eeehhccCCeEEeeecccc-c---EeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 100 IVFALAHSGVCAAFSRETN-R---RICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g-~---~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
++++.+.+|.+++|+..+. + .+..+ .+|...|.++.|+| +++.|++ ++.| ++++||++.+++..
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s----~s~d------g~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIAS----GSED------CTVMVWEIPDGGLV 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEE----EETT------SEEEEEECCTTCCS
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEE----EeCC------CeEEEEEccCCCCc
Confidence 4445678999999997543 2 34455 45889999999999 8999999 4456 79999999998542
Q ss_pred Cc--ccceee-ccccCceEEEEeCCCC-cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 175 SG--FALFES-ESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 175 ~~--~~l~~~-~~~~~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
.. .++... .+...+..|+|+ |+| .+|++|+.|++|+|||+.+++++.++..
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------ 172 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP------------------------ 172 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECT------------------------
T ss_pred cccCCceEEecCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEec------------------------
Confidence 11 011111 133445589997 898 6999999999999999988777665510
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCc-eEEEEEcCCCcEEEEE---e-CC
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT-PSAFIFLYENQLFLTF---R-NR 324 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~-v~sv~FspdgqllaS~---s-D~ 324 (464)
..|...+.+++|+| ++..+++++.|++|+|||+++++++..+ .+|... +..++|+|||++|+++ + |+
T Consensus 173 ------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 173 ------DVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp ------TTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ------CCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 12224556777777 4567888999999999999999999998 788765 8999999999999999 7 99
Q ss_pred eEEEEeC-CCce-EEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccC
Q 012410 325 TVAVWNF-RGEL-VTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINAT 400 (464)
Q Consensus 325 TIklWd~-~Ge~-l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh 400 (464)
+|++||+ +++. +..+. +|... +..++|+|||++|+.++. .|++|++||+.+++ ++..+.+|
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSG-----VLLPFFDPDTNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSS-----CEEEEEETTTTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEE
T ss_pred eEEEEcCccccCCceEEeccCCCc-----eeEEEEcCCCCEEEEEEc----------CCCeEEEEEecCCCcceEeeccc
Confidence 9999999 4554 44443 45555 789999999999975432 39999999999998 47777776
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. -..|++++|+|||..+++ .|+.+++|+
T Consensus 311 ~~--------------------------------~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 311 SS--------------------------------KESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp CC--------------------------------SSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred cc--------------------------------CCcccceEEeccccccee--cceeEEEEE
Confidence 52 017899999999999886 567999997
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=323.33 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=198.1
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
-..+|++|+|||||+.+|| +++| +|++ +..++++. ..|. +.+..|+|+ ||| .|
T Consensus 14 ~~~~v~sv~~SpDG~~iAS----as~D------~TV~--d~~~~~~l---~gh~----~~v~~V~Fs-Pdg-------~~ 66 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLT----TFPD------ISIG--QPKYAKDI---NCNS----KNLFHVKEF-PLE-------FE 66 (588)
T ss_dssp CSSSSCCEEECTTSCEEEE----CSSS------EEEE--EECCCSCC---SSBG----GGTEEEEEE-CCC-------CC
T ss_pred hhccEEEEEECCCCCEEEE----EcCC------ceee--ccccccee---cCCC----ccEEEEEEC-CCC-------Cc
Confidence 3478999999999999999 6677 7888 65555543 3333 334489998 899 56
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCc----ceeeEEEEccCCC
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLH----RNKKVDFIEQFNE 274 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~----~~~~V~F~~~~~~ 274 (464)
+++++|+.+. ..+.++. ...|.+|+|||+ .|++|+|||.++ ++.++.|+.+ .+.+|+|+| ++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~ 142 (588)
T 2j04_A 67 NKLDFELAQQ-NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IES 142 (588)
T ss_dssp CTTTTSCCCS-SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSS
T ss_pred ceEEEEeCCC-ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCC
Confidence 6666666432 2222322 678999999994 789999999754 8888873211 489999999 578
Q ss_pred eEEEEeCCCeEEEEECCCCc-------EEEEc----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce---EEE
Q 012410 275 KLLVKQENENLQILDVRNAE-------LMEVS----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL---VTS 338 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~-------~l~~l----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~---l~t 338 (464)
.|+++++||+|+|||+.+++ .++++ .||..+|.+++||||| +|+++ |++|++||+. +++ +++
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 88889999999999999986 46776 7788999999999999 55666 9999999994 553 467
Q ss_pred e-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 339 F-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 339 l-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
| .+|... |++|+|+ |++|||+| |++|+|||+.+++......||++
T Consensus 221 L~~~h~~~-----V~svaFs--g~~LASa~------------~~tIkLWd~~~~~~~~~~~gh~~--------------- 266 (588)
T 2j04_A 221 IQNASRRK-----ITDLKIV--DYKVVLTC------------PGYVHKIDLKNYSISSLKTGSLE--------------- 266 (588)
T ss_dssp EECCCSSC-----CCCEEEE--TTEEEEEC------------SSEEEEEETTTTEEEEEECSCCS---------------
T ss_pred ecccccCc-----EEEEEEE--CCEEEEEe------------CCeEEEEECCCCeEEEEEcCCCc---------------
Confidence 8 488776 8899999 69999986 79999999988887555558987
Q ss_pred cccccccccccccccccccCEEEEEE--cCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFY--DEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slaf--spDg~~LaSgs~DgtVrlWd 463 (464)
.|++++| +|||+.|+++++||+ |||.
T Consensus 267 -------------------~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 267 -------------------NFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp -------------------CCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred -------------------eEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 8889999 999999999999999 9986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=286.08 Aligned_cols=303 Identities=12% Similarity=0.106 Sum_probs=235.7
Q ss_pred hccCC--eEEeeecccc--cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 104 LAHSG--VCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 104 l~~~g--~~~~~~~~~g--~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
...++ .+..++..++ +.+..+.. +.. +.+++|+|++..+++ ++.+ +++++|++.+|+.....+.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~-~~~~~~s~~~~~~~~----~~~~------~~i~~~d~~~g~~~~~~~~ 162 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKT-GFQ-PKSVRFIDNTRLAIP----LLED------EGMDVLDINSGQTVRLSPP 162 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEEC-SSC-BCCCEESSSSEEEEE----BTTS------SSEEEEETTTCCEEEECCC
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcC-CCC-ceEEEEeCCCeEEEE----eCCC------CeEEEEECCCCeEeeecCc
Confidence 34555 4444444335 56666644 433 569999996655555 4555 6899999999987532221
Q ss_pred ee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEc
Q 012410 180 FE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSI 247 (464)
Q Consensus 180 ~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi 247 (464)
-. ..+.+.+..++|+ |+|+++++++.|++|++||+++++++.++. ...+..++|+|+ .|++|++||+
T Consensus 163 ~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 163 EKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp HHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 11 1123344579996 899999999999999999999999998876 567999999873 5789999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe--------CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EE
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LF 318 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--------~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-ll 318 (464)
.+|+++.++.++ ..+..++|+|+ +..+++++ .|++|++||+.+++++..+ .|...+..++|+|+|+ ++
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 999999998864 55799999984 56777766 4899999999999988876 4455889999999996 55
Q ss_pred EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc----cccccCCCCeEEEEeCCCCe
Q 012410 319 LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE----DQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~----~~~~~s~DgtIklWdi~tG~ 392 (464)
++++ |++|++||+ +|+++..+. |... +.+++|+|||++|++++..... --..++.||+|++||+.+|+
T Consensus 319 ~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 319 VSDMCCSKIEVYDLKEKKVQKSIP-VFDK-----PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE-CSSS-----EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEecCCCEEEEEECCCCcEEEEec-CCCC-----CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 6767 999999999 699998886 4444 7899999999999988752100 00344558999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
++..+.++. .+.+++|+|||+.|++++. |++|++|+
T Consensus 393 ~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 393 VKEFWEAGN-----------------------------------QPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEECSS-----------------------------------SEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCC-----------------------------------CCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999998754 7899999999999998875 99999997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=288.23 Aligned_cols=266 Identities=7% Similarity=0.033 Sum_probs=197.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCCcccceee
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~--~g~~l~svSa~~sddfs~L~~~t 162 (464)
..|..+.+. |++|++++.|+++++||+.+++ ++..+ .+|...|++|+|+| +|+.|+++ +.| ++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~----s~D------~~ 82 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASC----SYD------RK 82 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEE----ETT------SC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEE----ECC------CE
Confidence 356666665 8999999999999999988775 46677 45889999999986 48999994 456 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEE---EEec--CCCEeEEEEe
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKIR 235 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l---~tl~--~~~V~~Vafs 235 (464)
++||++++|+...... +. .+...+.+|+|+ |+ |++||+|+.|++|+|||+.++... ..+. ...|.+++|+
T Consensus 83 v~iWd~~~~~~~~~~~-~~-~h~~~V~~v~~~-p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE-HA-GHDSSVNSVCWA-PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp EEEECCSSSCCCEEEE-EC-CCSSCCCEEEEC-CTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred EEEEECCCCcceEEEE-cc-CCCCceEEEEEC-CCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 9999999886432111 11 122445589997 77 899999999999999999876322 2222 4568888888
Q ss_pred CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEc
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~Fs 312 (464)
|+.. .|.++....+ + .+.++..|++++.|++|+|||+.++ +++.++.+|...|.+++|+
T Consensus 160 ~~~~---------~~~~~~~~~~--~-------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 160 PAVV---------PGSLIDHPSG--Q-------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CCCC---------C------CCS--C-------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred cccC---------Cccccccccc--c-------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 8632 1111110000 0 0112356777899999999999865 5788999999999999999
Q ss_pred CCC----cEEEEEe-CCeEEEEeCC-C---c-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 313 YEN----QLFLTFR-NRTVAVWNFR-G---E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 313 pdg----qllaS~s-D~TIklWd~~-G---e-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
|++ ++|||++ |++|+|||++ + + ..+.+.+|..+ |++++|+|||++||+++. |++
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----v~~v~~sp~g~~las~~~-----------D~~ 285 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGG-----------DNK 285 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC-----EEEEEECTTTCCEEEEES-----------SSC
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc-----EEEEEEcCCCCEEEEEcC-----------CCe
Confidence 997 8999999 9999999983 2 2 34567788877 899999999999999987 999
Q ss_pred EEEEeCC-CC--eEEEEEccCCC
Q 012410 383 INVSSIL-TG--KCLAKINATNC 402 (464)
Q Consensus 383 IklWdi~-tG--~cl~tl~gh~~ 402 (464)
|+||+.. .| +|+.++...+.
T Consensus 286 v~lw~~~~~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 286 VTLWKESVDGQWVCISDVNKGQG 308 (316)
T ss_dssp EEEEEECTTSCEEEEEECC----
T ss_pred EEEEEECCCCcEEEeeeccCCCC
Confidence 9999975 34 68888866543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=293.19 Aligned_cols=220 Identities=8% Similarity=0.060 Sum_probs=184.8
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-----CCceeEEEEEc---------CCCcEEEEEe-eCC
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-----SSHVPLKILSI---------EDGTVLKVFY-HLL 260 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-----s~d~tIklWdi---------~tG~~l~tl~-~~~ 260 (464)
+|+++|++|+.|++|+|||+++++++.++....|..++|+| +.|++|++|+. +++++++.+. .+.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA 125 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence 57899999999999999999999999888755666666654 68999999954 4888888777 444
Q ss_pred cceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 261 HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 261 ~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
..+.+++|+|. ++..+++++.|++|+|||+++++++.+..+ |...+.+++|+|||++||+++ |++|+|||+ +|+++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 67899999882 256677789999999999999999887754 455799999999999999999 999999999 69988
Q ss_pred -EEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 337 -TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 337 -~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
.+|++ |... |.+++|+|||.+|++++ |++|+|||+.+++++.+++.+....
T Consensus 206 ~~~~~~~h~~~-----v~~l~fs~~g~~l~s~~------------~~~v~iwd~~~~~~~~~~~~~~~~~---------- 258 (343)
T 3lrv_A 206 SSRFPVDEEAK-----IKEVKFADNGYWMVVEC------------DQTVVCFDLRKDVGTLAYPTYTIPE---------- 258 (343)
T ss_dssp CEECCCCTTSC-----EEEEEECTTSSEEEEEE------------SSBEEEEETTSSTTCBSSCCCBC------------
T ss_pred ccEEeccCCCC-----EEEEEEeCCCCEEEEEe------------CCeEEEEEcCCCCcceeeccccccc----------
Confidence 89999 9987 89999999999999998 4499999999999988777643200
Q ss_pred CCccccccccccccccccccccCE--EEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDI--TSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V--~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
..+ .+++|+|+|+.|++|+. |+.|+||+
T Consensus 259 ---------------------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 259 ---------------------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ------------------------CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---------------------ccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 022 46999999999999998 99999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=275.60 Aligned_cols=246 Identities=9% Similarity=0.103 Sum_probs=208.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s- 237 (464)
+++++|++.+|++...+..+ ..+.+++|+ |||+.| ++++.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg 85 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVG-----SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (391)
T ss_dssp TEEEEEETTTTEEEEEEECS-----SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEeecC-----CCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC
Confidence 79999999999875433322 335689997 899876 788899999999999999998887 568999999884
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEE-EEeCCCeEEEEECCCCcEEEEcccCCCceEE
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ll-a~s~D~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
.+++|++||+++|+++..+.++ ..+..++|+|+ +..++ +++.|++|++||+.+++++..+..| ..+..
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 162 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG 162 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcce
Confidence 4689999999999999998864 56799999984 55564 5678999999999999999998877 46799
Q ss_pred EEEcCCCcEE-EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 309 FIFLYENQLF-LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 309 v~Fspdgqll-aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
++|+|||+.| ++++ |++|++||+ +++++..+..+. . +..++|+|||++|++++. .+.|++|++
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~g~~l~~~~~--------~~~~~~v~~ 228 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A-----PSGIAVNPEGTKAYVTNV--------DKYFNTVSM 228 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E-----EEEEEECTTSSEEEEEEE--------CSSCCEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C-----ccceEECCCCCEEEEEec--------CcCCCcEEE
Confidence 9999999877 6777 999999999 699988887553 3 789999999999998873 112899999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEeeCCCcEEeccC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWSN 464 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L-aSgs~DgtVrlWd~ 464 (464)
||+.+++++.++..|. .+.+++|+|||+.| ++++.|++|++||.
T Consensus 229 ~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEEecCC-----------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 9999999999998876 57899999999988 68899999999984
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=272.86 Aligned_cols=264 Identities=15% Similarity=0.119 Sum_probs=206.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccc----cEeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCCcccce
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g----~~l~~ln~~~~~~i~Sv~fs~--~g~~l~svSa~~sddfs~L~~ 160 (464)
..|..+.+. |++|++++.+|.+++|++.++ +.+..+. +|...|.++.|+| ||+.|++++ .|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~----~d------ 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASAS----YD------ 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEE----TT------
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEc----CC------
Confidence 456667665 899999999999999998877 4667774 5888899999999 699999944 55
Q ss_pred eeEEEEEeccCCCCCcc----cceee-ccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEE
Q 012410 161 RSTKIEYIRRGKPDSGF----ALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEI 232 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~----~l~~~-~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~V 232 (464)
++++||++.+++..... ..... .+...+..++|+ |+ |++|++++.|++|+|||+.+++++.++. ...+..+
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 79999999988643211 11111 123345589997 88 9999999999999999999888654332 0111111
Q ss_pred EEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--CCCeEEEEeCCCeEEEEECCCCcE--EEEcccCCCceEE
Q 012410 233 KIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSA 308 (464)
Q Consensus 233 afs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--~~~~lla~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~s 308 (464)
.+.+ ..+...+.+++|+|. .+..+++++.|+.+.+|+..+++. +..+.+|...|.+
T Consensus 160 ~~~~--------------------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 160 SIPP--------------------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRS 219 (351)
T ss_dssp SCCC--------------------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEE
T ss_pred cccc--------------------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeE
Confidence 1111 122356688888884 367788899999999999888876 7789999999999
Q ss_pred EEEcCCC----cEEEEEe-CCeEEEEeC-CC----------------------------------------------ceE
Q 012410 309 FIFLYEN----QLFLTFR-NRTVAVWNF-RG----------------------------------------------ELV 336 (464)
Q Consensus 309 v~Fspdg----qllaS~s-D~TIklWd~-~G----------------------------------------------e~l 336 (464)
++|+|++ ++|++++ |++|++||+ ++ +++
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 9999999 8999999 999999998 44 788
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINAT 400 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh 400 (464)
.++.+|... |++++|+|||++|||++. ||+|+|||+.++ +|+.++..|
T Consensus 300 ~~~~~h~~~-----v~~~~~s~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 300 SEHDDHNGE-----VWSVSWNLTGTILSSAGD-----------DGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEECTTSSC-----EEEEEECSSSCCEEEEET-----------TSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEEeccccc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEecCcCcchhheeehccc
Confidence 999999988 899999999999999987 999999999988 577777665
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=299.17 Aligned_cols=311 Identities=9% Similarity=0.068 Sum_probs=245.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe--ccCCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i--~~G~~~~ 175 (464)
|.++++...++.+.+||..+|+.+.++..++. +++++|+|||+.|++++ .+ .++.+||+ .++++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~----~d------~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC----CC------CeEEEEECcCCCCcEEE
Confidence 77888889999999999999999999976554 89999999999999955 33 59999999 7887654
Q ss_pred cccceeeccccCceEEEEeCC----CCcEEEEecC-CCcEEEEeCCCCeEEEEecC-------------CCEeEEEEeCC
Q 012410 176 GFALFESESLKWPGFVEFDDV----NGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-------------KHVQEIKIRSS 237 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~p----dGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~-------------~~V~~Vafs~s 237 (464)
.++ .-..|..|+|| | ||++|++++. |++|+|||..+++++.++.. ..|.+|+|+|+
T Consensus 217 ~i~-----~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 217 EIK-----IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp EEE-----CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEe-----cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 333 12456799997 9 9999998885 89999999999999988753 26889999984
Q ss_pred ---------CceeEEEEEcCCCcEEE--EEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEccc----
Q 012410 238 ---------SHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT---- 301 (464)
Q Consensus 238 ---------~d~tIklWdi~tG~~l~--tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~g---- 301 (464)
.+++|.+||+.++++++ ++. +......++|+| ++.++++++ .|++|++||+.+|+++.++..
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 56799999999988776 444 235668899999 466677654 789999999999999998774
Q ss_pred CCCceEEEEEcCC-CcEEEEEe--CCeEEEEeC-C-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 302 EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 302 h~~~v~sv~Fspd-gqllaS~s--D~TIklWd~-~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
|......+ ++|+ |++++|++ |++|+|||. + +++++++++|..+ +..|+|+|||++|++++.-.
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCCEEEECCTTC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCCcEEEecCCC
Confidence 55444444 5676 88899985 899999998 6 8999999999887 67899999999999986311
Q ss_pred CccccccCCCCeEEEEeCCCCeEE-EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl-~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
|+.. .+++|.|||+.|++++ .+|.-- -|+..+++-+.|+.++|+|||++
T Consensus 443 ~~~~----~~~~v~v~d~~~~~~~~~~~~v~--------------------------~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 443 PDAR----ISQSVAVFDLKNLDAKYQVLPIA--------------------------EWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp SSHH----HHTCEEEEETTCTTSCCEEECHH--------------------------HHHCCCSSCCEEEEEEECSSSSE
T ss_pred CCcc----cCceEEEEECCCCCCCeEEeech--------------------------hhcccCCCCCceEeccCCCCCCE
Confidence 1100 1689999999999998 555210 01111111238999999999999
Q ss_pred EEEe-----eCCCcEEeccC
Q 012410 450 IYTG-----NRHGLVHVWSN 464 (464)
Q Consensus 450 LaSg-----s~DgtVrlWd~ 464 (464)
|+.+ +.|++|.|||-
T Consensus 493 ~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 493 VWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEEECCTTSCCEEEEEET
T ss_pred EEEEeecCCCCCCeEEEEEC
Confidence 9966 35899999983
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=272.20 Aligned_cols=257 Identities=7% Similarity=0.055 Sum_probs=211.9
Q ss_pred cceEEEEec-----cceeehhccCCeEEeeeccc-ccEe-eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 89 TKVIEIVAA-----RDIVFALAHSGVCAAFSRET-NRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 89 s~v~~~~~a-----g~~l~~l~~~g~~~~~~~~~-g~~l-~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
..|..+.+. |++|++++.+|.+++|++.+ ++.+ ..+ ..|...|.++.|+|+|+.|++++ .| +
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~----~d------g 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDGSKVFTAS----CD------K 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTTSSEEEEEE----TT------S
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcCCCEEEEEc----CC------C
Confidence 566666666 48999999999999999887 7776 556 55888999999999999999844 55 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEE--eCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-- 236 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaF--s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-- 236 (464)
+++||++.++++.. . ..+...+..++| + |+|++|++++.|++|+|||+.+++++.++. ...+..+.+.+
T Consensus 109 ~v~iwd~~~~~~~~---~--~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ---I--AQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182 (368)
T ss_dssp EEEEEETTTTEEEE---E--EECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred cEEEEEcCCCCcee---e--ccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence 99999999888642 1 123344558999 7 899999999999999999999999988877 45677777754
Q ss_pred ----CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCe----EEEEeCCCeEEEEECCCC---cEEEEcccCC
Q 012410 237 ----SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNA---ELMEVSRTEF 303 (464)
Q Consensus 237 ----s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~----lla~s~D~tIkIWDv~tg---~~l~~l~gh~ 303 (464)
..++.+++|++.++....... ...+....+++.+. ... +++++.|++|+|||+.++ +++..+.+|.
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD-KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC-TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc-CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 478899999998776544332 23355677777663 222 888999999999999998 6677888887
Q ss_pred C------------ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 304 M------------TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 304 ~------------~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. .|.+++|+|||++|++++ |++|+|||+ +|+++.++.+|... |++++|+|||++||+++.
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP-----ISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC-----EEEEEECTTSSCEEEEEC
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC-----ceEEEECCCCCeEEEEec
Confidence 6 699999999999999999 999999999 69999999999988 899999999999999986
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=289.28 Aligned_cols=257 Identities=13% Similarity=0.140 Sum_probs=204.0
Q ss_pred cccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEecc----------CCCCCcccceeeccc
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRR----------GKPDSGFALFESESL 185 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~----------G~~~~~~~l~~~~~~ 185 (464)
+++........|...|.+++|+|+ +..|++ ++.+ ++|+||++.. +++...+..|.
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat----~~~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---- 181 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIAT----KTPS------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---- 181 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEE----ECSS------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCS----
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEE----ECCC------CcEEEEECCCcccccCccccCCCcEEecCCC----
Confidence 444433333568888999999997 567777 4455 6899999976 33332222222
Q ss_pred cCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
..+.+++|+ |+|+ +|++|+.|++|+|||+.++.... ..+ .....+.+|...+.
T Consensus 182 ~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~~~--------~~~~~~~~h~~~v~ 235 (430)
T 2xyi_A 182 KEGYGLSWN-PNLNGYLLSASDDHTICLWDINATPKEH-----------------RVI--------DAKNIFTGHTAVVE 235 (430)
T ss_dssp SCCCCEEEC-TTSTTEEEEECTTSCEEEEETTSCCBGG-----------------GEE--------ECSEEECCCSSCEE
T ss_pred CCeEEEEeC-CCCCCeEEEEeCCCeEEEEeCCCCCCCC-----------------cee--------ccceeecCCCCCEe
Confidence 334489997 8988 99999999999999998743210 000 01233444456788
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-C-CceEE
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-R-GELVT 337 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~-Ge~l~ 337 (464)
.|+|+|..+..+++++.|++|+|||++++ +++..+.+|...|.+++|+|+++ +||+++ |++|+|||+ + ++++.
T Consensus 236 ~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~ 315 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred eeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE
Confidence 99998855566677889999999999998 57788889999999999999998 799999 999999999 4 67899
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCC--------------CeEEEEEccCCC
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT--------------GKCLAKINATNC 402 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~t--------------G~cl~tl~gh~~ 402 (464)
++.+|... |.+++|+|+++ +|||++. |++|+|||+.+ .+++..+.+|..
T Consensus 316 ~~~~h~~~-----v~~i~~sp~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 316 SFESHKDE-----IFQVQWSPHNETILASSGT-----------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp EEECCSSC-----EEEEEECSSCTTEEEEEET-----------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred EeecCCCC-----EEEEEECCCCCCEEEEEeC-----------CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 99999988 89999999995 7899886 99999999987 478888889986
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.|++++|+|+++ .|+|++.||+|+||+
T Consensus 380 ----------------------------------~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 380 ----------------------------------KISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp ----------------------------------CEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ----------------------------------CceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 899999999999 999999999999997
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=279.54 Aligned_cols=264 Identities=9% Similarity=-0.001 Sum_probs=200.2
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec------
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------ 169 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~------ 169 (464)
..+++|++++.||.+++||+.+|+.+..+. ...|+++.|+|+ +++ ++.| +++++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s----~s~D------~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IIS----RGPC------NRLLLLYPGNQITIL 109 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEE----ECST------TEEEEEETTTEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEE----ecCC------CeEEEEEccCceEEe
Confidence 347899999999999999999999999985 456889999997 666 4555 688888643
Q ss_pred ---cCCCCCcccceeeccccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEE
Q 012410 170 ---RGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 170 ---~G~~~~~~~l~~~~~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIkl 244 (464)
++++. ..+...+...+.+++|+ | +|++|++|+.|++|+|||+.+++++.....
T Consensus 110 ~~~~~~~~---~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------ 167 (343)
T 3lrv_A 110 DSKTNKVL---REIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------ 167 (343)
T ss_dssp ETTTCCEE---EEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEEEEECC------------------
T ss_pred ecCCccee---EEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec------------------
Confidence 44422 12222222445689997 9 999999999999999999988776443310
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEccc-CCCceEEEEEcCCCcEEEEEe
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRT-EFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~g-h~~~v~sv~FspdgqllaS~s 322 (464)
++...+.+++|+| ++..+++|+.|++|+|||+++++++ ..+.+ |...|.+++|+|+|++|++++
T Consensus 168 -------------~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 168 -------------KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp -------------CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred -------------CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 1113467788887 3556666899999999999999988 88888 999999999999999999999
Q ss_pred CCeEEEEeC-CCceEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 323 NRTVAVWNF-RGELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|++|+|||+ +++++.+++. |...+. -.+++|+|+|++||+++. .|++|+||++.+++.....
T Consensus 234 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~s~----------~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 234 DQTVVCFDLRKDVGTLAYPTYTIPEFKTG---TVTYDIDDSGKNMIAYSN----------ESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp SSBEEEEETTSSTTCBSSCCCBC-----C---CEEEEECTTSSEEEEEET----------TTTEEEEEEECTTTCSEEE-
T ss_pred CCeEEEEEcCCCCcceeeccccccccccc---ceEEEECCCCCEEEEecC----------CCCcEEEEEEcccccceEe-
Confidence 669999999 5887766654 544411 135999999999999873 3899999998665422221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC---CCCEEEEeeCCCcEEec
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE---ERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp---Dg~~LaSgs~DgtVrlW 462 (464)
. .+..++|+| +++.|++++.||+++++
T Consensus 300 ---~----------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 300 ---D----------------------------------EESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp ---E----------------------------------EEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ---c----------------------------------CceeEecCccccccceeEEEecCCceEEE
Confidence 1 677889999 99999999999999986
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=283.92 Aligned_cols=244 Identities=11% Similarity=0.092 Sum_probs=195.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EEEEecC--C-------------------------------------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--K------------------------------------- 227 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l~tl~~--~------------------------------------- 227 (464)
.|+|+ |||++|+++ .+++|++||+.+|+ ++.++.. .
T Consensus 9 ~v~~s-~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 9 NLLTS-RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp EEEEC-SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEec-CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 79997 899977765 57899999999999 7666541 1
Q ss_pred -----------------CEeEEEEeCC---------CceeEEEEEcC--CCcEEEEEe--eCCcceeeEEEEccCCCeEE
Q 012410 228 -----------------HVQEIKIRSS---------SHVPLKILSIE--DGTVLKVFY--HLLHRNKKVDFIEQFNEKLL 277 (464)
Q Consensus 228 -----------------~V~~Vafs~s---------~d~tIklWdi~--tG~~l~tl~--~~~~~~~~V~F~~~~~~~ll 277 (464)
.|.+++|+|+ .|++|+|||+. +|++++++. .+...+.+|+|+| ++..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 165 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVI 165 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEE
Confidence 5999999884 67899999999 999999997 3346779999999 467788
Q ss_pred EEeCCCeEEEEECCCCcEEE----EcccCCCceEEEEEcCC---CcEEEEEe-CCeEEEEeC-CCceEEE-eccCCCCcC
Q 012410 278 VKQENENLQILDVRNAELME----VSRTEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNF-RGELVTS-FEDHLLWHP 347 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~l~----~l~gh~~~v~sv~Fspd---gqllaS~s-D~TIklWd~-~Ge~l~t-l~gH~~~~~ 347 (464)
+++.|++|++||+.++++.. ++.+|...|.+++|+|| +++|++++ |++|+|||+ +|+++.+ +.+|..+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-- 243 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-- 243 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC--
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc--
Confidence 89999999999999988654 88999999999999999 99999999 999999999 6999988 6699988
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|++++|+ ||++|+|++. |++|+|||+.+|+|+.++..+.. +....... + .....+
T Consensus 244 ---v~~~~~s-d~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~---~------~~~~~~ 298 (450)
T 2vdu_B 244 ---VSSICCG-KDYLLLSAGG-----------DDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQ---H------LAPPRF 298 (450)
T ss_dssp ---EEEEEEC-STTEEEEEES-----------SSEEEEEETTTCCEEEEEECHHH-HGGGCCTT---S------BC----
T ss_pred ---eEEEEEC-CCCEEEEEeC-----------CCeEEEEECCCCcEeeeecchhh-hhhhhhhc---c------cccccc
Confidence 8999999 9999999987 99999999999999999976531 00000000 0 000000
Q ss_pred ccccc-ccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 428 RSTVG-EALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~-~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
..... ..-..|.+|+|+|||+.|++++ .|++|+||+
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 00000 1112799999999999999999 999999997
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=277.83 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=190.0
Q ss_pred eEEEEeCCCCcE-EEEecCCCcEEEEeCCCC-eE---EEEec--CCCEeEEEEeC-C--------CceeEEEEEcCCC--
Q 012410 189 GFVEFDDVNGKV-LTYSAQDSIYKVFDLKNY-TM---LYSIS--DKHVQEIKIRS-S--------SHVPLKILSIEDG-- 250 (464)
Q Consensus 189 ~~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg-~~---l~tl~--~~~V~~Vafs~-s--------~d~tIklWdi~tG-- 250 (464)
.+++++ |+... +++++.|++|+|||+.+. +. +.++. ...|.+++|+| + .|++|+|||++++
T Consensus 38 ~~~~~~-~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVN-PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEEC-SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEEC-CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 368997 66654 446899999999999654 32 23343 56899999998 3 6899999999998
Q ss_pred -----cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe-
Q 012410 251 -----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 251 -----~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+++.++.+|...+..|+|+|.....+++++.|++|+|||+.+++++.++ .+|...|.+++|+|+|++|++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 7788999777899999999953346777899999999999999999999 89999999999999999999999
Q ss_pred CCeEEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEc-
Q 012410 323 NRTVAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKIN- 398 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~- 398 (464)
|++|+|||+ +|+++.++ .+|.... +..++|+|||++|++|.. .+.|++|+|||+.++++ +....
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~g~~--------~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTR----PVHAVFVSEGKILTTGFS--------RMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSS----CCEEEECSTTEEEEEEEC--------TTCCEEEEEEETTBCSSCSEEEEC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCc----ceEEEEcCCCcEEEEecc--------CCCCceEEEEcCccccCCceEEec
Confidence 999999999 69999999 7888752 678999999999999831 12399999999999876 33332
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.|.. .|.+++|+|||+.|+ +|+.||+|++||
T Consensus 265 ~~~~----------------------------------~v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 265 DTSS----------------------------------GVLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp CCCS----------------------------------SCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred cCCC----------------------------------ceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 3433 789999999999996 667899999998
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=262.74 Aligned_cols=264 Identities=8% Similarity=0.041 Sum_probs=215.0
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti 163 (464)
.|..+.+. |++|++++.+|.+++|++.+++ .+..+ ..|...|.+++|+|+|+ .|++++ .+ +++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~----~d------g~i 81 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGT----VQ------GEI 81 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEE----TT------SCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEc----CC------CeE
Confidence 45555555 8899999999999999988887 34444 35888899999999999 898844 45 699
Q ss_pred EEEEe-ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC---------CeEEEEec-CCCEeEE
Q 012410 164 KIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKHVQEI 232 (464)
Q Consensus 164 ~l~~i-~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---------g~~l~tl~-~~~V~~V 232 (464)
++|++ .+++. ..+.. ..+...+..++|+ | ++.|++++.|++|++||+.+ ++++.++. ...|.++
T Consensus 82 ~~wd~~~~~~~-~~~~~--~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTN--NEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSE-EECBS--CCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred EEEEeccCCce-Eeccc--cCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE
Confidence 99999 88875 22222 0022344589998 7 89999999999999999998 77776665 5789999
Q ss_pred EEeCC------CceeEEEEEcCC-CcEE-E-EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC------cEEE
Q 012410 233 KIRSS------SHVPLKILSIED-GTVL-K-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA------ELME 297 (464)
Q Consensus 233 afs~s------~d~tIklWdi~t-G~~l-~-tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg------~~l~ 297 (464)
+|+|+ .|++|++||+++ ++.. . ....+...+.+++|+|.++..+++++.|++|+|||+..+ +++.
T Consensus 157 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred EecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 99874 788999999998 6643 2 223445678999999822567788999999999999987 8888
Q ss_pred EcccCCC---------ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEEE
Q 012410 298 VSRTEFM---------TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 298 ~l~gh~~---------~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaS 365 (464)
++.+|.. .|.+++|+|+|++|++++ |++|++||+ +|+++.++.+| ..+ |.+++ |||++||+
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-----VVKIA--CSDNILCL 309 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSE-----EEEEE--ECSSEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCC-----ceEec--CCCCeEEE
Confidence 8888865 899999999999999999 999999999 69999999999 887 88998 99999999
Q ss_pred EecCCCccccccCCCCe-EEEEe
Q 012410 366 YCKAEPEDQWMEGSAGS-INVSS 387 (464)
Q Consensus 366 gs~~~~~~~~~~s~Dgt-IklWd 387 (464)
++. ||+ .+.+.
T Consensus 310 ~s~-----------Dg~~~~~~~ 321 (342)
T 1yfq_A 310 ATS-----------DDTFKTNAA 321 (342)
T ss_dssp EEE-----------CTHHHHCSS
T ss_pred Eec-----------CCccccccc
Confidence 997 888 55544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=305.15 Aligned_cols=244 Identities=14% Similarity=0.146 Sum_probs=194.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCcccceeeccccCceEEEEeCCC--CcEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDDVN--GKVL 201 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~L 201 (464)
.+|...|.+++|+|+|+.|+++ +.| ++|+||++. ++++...+..| .+.+.+|+|+ |+ |++|
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg----~~d------g~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s-~~~~~~~l 70 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATC----SSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWA-HPKFGTIL 70 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEE----ETT------TEEEEEEEETTEEEEEEEECCC----SSCEEEEEEC-CTTSCSEE
T ss_pred ccCcceeEEEEECCCCCeEEEE----ECC------CcEEEEecCCCCCccceeccCC----cCceEEEEec-CCCCCCEE
Confidence 4589999999999999999994 455 799999998 44433222222 2345589997 66 9999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEEEe
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQ 280 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla~s 280 (464)
++|+.|++|+|||+.+++.. ++..+..|...+.+++|+|.. +..+++++
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWS------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp EEEETTSCEEEEEEETTEEE------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCccc------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEe
Confidence 99999999999998776521 222333344567777777742 56788899
Q ss_pred CCCeEEEEECCCCc--EEEEcccCCCceEEEEEcC-------------CCcEEEEEe-CCeEEEEeC-CC----ceEEEe
Q 012410 281 ENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------------ENQLFLTFR-NRTVAVWNF-RG----ELVTSF 339 (464)
Q Consensus 281 ~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp-------------dgqllaS~s-D~TIklWd~-~G----e~l~tl 339 (464)
.|++|++||++++. ....+.+|...|.+++|+| |+++|++++ |++|++||+ ++ +++.++
T Consensus 121 ~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee
Confidence 99999999999984 3456788999999999999 699999999 999999998 45 678899
Q ss_pred ccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCCCCeEEEEeCCCCe-----EEEEEccCCCCCCcccccC
Q 012410 340 EDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-----CLAKINATNCSPKVDDELG 411 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpD---g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-----cl~tl~gh~~~~~~~~~~~ 411 (464)
.+|... |.+++|+|+ |++|++|+. ||+|+|||+.+++ .+....+|..
T Consensus 201 ~~h~~~-----V~~l~~sp~~~~~~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--------- 255 (753)
T 3jro_A 201 EGHSDW-----VRDVAWSPTVLLRSYLASVSQ-----------DRTCIIWTQDNEQGPWKKTLLKEEKFPD--------- 255 (753)
T ss_dssp CCCSSC-----EEEEEECCCCSSSEEEEEEES-----------SSCEEEEEESSSSSCCBCCBSSSSCCSS---------
T ss_pred cCCCCc-----EEEEEeccCCCCCCEEEEEec-----------CCEEEEecCCCCCCcceeEEeccCCCCC---------
Confidence 999988 899999999 999999987 9999999998875 2222233433
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+.|++|+.||+|++||.
T Consensus 256 -------------------------~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 256 -------------------------VLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp -------------------------CCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred -------------------------ceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 7899999999999999999999999984
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=277.41 Aligned_cols=234 Identities=8% Similarity=-0.022 Sum_probs=162.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCC--------C
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV--------N 197 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~p--------d 197 (464)
.|...+..+++++++..|++ ++.| ++++||++.+|++.....+.. .+|.+++.+|+|+ | |
T Consensus 87 ~~~~~~~~~~~~~~~~~las----~~~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~-p~~~~~~~~d 155 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLAC----VCQD------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIA-DVYSADNRLA 155 (393)
T ss_dssp ----------CCEEEEEEEE----EETT------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEE-EEECTTCSEE
T ss_pred ccCCCcceeecCCCCCEEEE----EeCC------CcEEEEECCCCccceeeeecccCCCCCceEEEEEc-cccccccCCC
Confidence 34455667788888888888 4566 899999999887632211111 1233566699998 5 8
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEe---------
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFY--------- 257 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~--------- 257 (464)
|++|||||.|+||||||+.++.++..+. ...|.+|+|+|+ .|++|+|||+.+++...++.
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 9999999999999999999888776544 678999999983 78999999999998776543
Q ss_pred ----------------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--------
Q 012410 258 ----------------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------- 313 (464)
Q Consensus 258 ----------------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-------- 313 (464)
++...+.+|+|.+.++.++++++.|++++|||+.+++....+.+|...+..+.|+|
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 23345688999977788888899999999999999999988888877777666655
Q ss_pred ------------CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 314 ------------ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 314 ------------dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
++.++++++ |++|+|||+ +|+++.++.+|..+ |++|+|||||++||+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-----V~svafspdG~~LA~as------------ 378 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-----IVDFCWHQDGSHLAIAT------------ 378 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-----EEEEEECTTSSEEEEEE------------
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-----EEEEEEcCCCCEEEEEe------------
Confidence 445678888 999999999 69999999999887 99999999999999998
Q ss_pred CCeEEEEeC
Q 012410 380 AGSINVSSI 388 (464)
Q Consensus 380 DgtIklWdi 388 (464)
++.|.||.+
T Consensus 379 ~~Gv~lvrL 387 (393)
T 4gq1_A 379 EGSVLLTRL 387 (393)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEE
Confidence 455777754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=278.68 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=152.6
Q ss_pred CceEEEEEEeeC----CCEEEEEEeecCCCCccc------------ceeeEEEEEe-ccCCCCCcccceeeccccCceEE
Q 012410 129 DEVIRSLFYNKN----NDSLITVSVYASDNFSSL------------KCRSTKIEYI-RRGKPDSGFALFESESLKWPGFV 191 (464)
Q Consensus 129 ~~~i~Sv~fs~~----g~~l~svSa~~sddfs~L------------~~~ti~l~~i-~~G~~~~~~~l~~~~~~~~~~~V 191 (464)
...|++|+|+|| ++.+++.+... .+|+| .-++|++|++ ++|+....+.+|..+ ...+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~--~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~----v~~l 184 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIK--AVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE----ETIL 184 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEE--EEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS----SCEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeE--EEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc----eeeE
Confidence 346899999999 88888855210 00110 1168888888 568776655555543 2278
Q ss_pred EEeCC---CCcEEEEecCCCcEEEEeCCCCeEEEEecC-----CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 192 EFDDV---NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 192 aFs~p---dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+|+ | ||..|||||.|+||||||+++|+++++|.. ..|..++|+|+ |+.+.++.+
T Consensus 185 ~fs-~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd------------G~~lvs~s~----- 246 (356)
T 2w18_A 185 TFA-EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM------------GLLFIVLSH----- 246 (356)
T ss_dssp EEE-EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET------------TEEEEEEC------
T ss_pred Eee-ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC------------CCEEEEecc-----
Confidence 887 5 779999999999999999999999999963 24667788886 554444432
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
+...-.+++|+.|++||+||+.+|+++.++ .||.....+..++ |.++||++ |+||||||+ +|+|+
T Consensus 247 ------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 247 ------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp -----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred ------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence 111123566889999999999999999876 4787665554444 89999999 999999999 79999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
++|++|...+ +..++|||||++|||||. |+||||||+
T Consensus 319 ~tL~gH~~~v----vs~vafSPDG~~LaSGS~-----------D~TIklWd~ 355 (356)
T 2w18_A 319 ALLPPVSDQH----WSFVKWSGTDSHLLAGQK-----------DGNIFVYHY 355 (356)
T ss_dssp EEECCC--CC----CCEEEECSSSSEEEEECT-----------TSCEEEEEE
T ss_pred EEecCCCCCe----EEEEEECCCCCEEEEEEC-----------CCcEEEecC
Confidence 9999998863 346999999999999997 999999995
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-30 Score=256.54 Aligned_cols=258 Identities=9% Similarity=0.087 Sum_probs=213.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEee----cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLN----VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln----~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
+.++++...++.+++||..+|+.+..+. .+|...|++++|+|+|..+++ ++.+ +++++|++.++++
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s----~~~d------~~v~~~d~~~~~~ 203 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS----QMQA------NAVHVFDLKTLAY 203 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE----EGGG------TEEEEEETTTCCE
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE----ECCC------CEEEEEECCCceE
Confidence 7788888899999999999999887432 357888999999999998888 4455 6999999999887
Q ss_pred CCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------------
Q 012410 174 DSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------------- 237 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------------- 237 (464)
...+.. +...+..++|+ |+|+.| ++++.|++|++||+.+++++.++. ...+..++|+|+
T Consensus 204 ~~~~~~----~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 204 KATVDL----TGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEEEEC----SSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EEEEcC----CCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 543332 22456689998 899877 566689999999999999998887 456899999873
Q ss_pred --CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 238 --SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
.|+.|++||+.+|+++..+.+. ..+..++|+|+ +..+++ ++.|++|++||+.+++++..+. +...+.+++|+||
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGNT-ENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECSS-TTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred ccCCCeEEEEECCCCcEEeeccCC-CCcceEEECCC-CCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 2779999999999999888653 46789999884 556656 5799999999999999998876 5578999999999
Q ss_pred CcEEEEEe-C---------------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 315 NQLFLTFR-N---------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 315 gqllaS~s-D---------------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
|+.|++++ + ++|++||. +|+++.++.++. . +.+++|+|||++|++++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~~l~~~~~--------- 420 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-----PTGLDVSPDNRYLVISDF--------- 420 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-----EEEEEECTTSCEEEEEET---------
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-----CceEEEcCCCCEEEEEEC---------
Confidence 99888776 3 49999999 799999998754 3 789999999999988763
Q ss_pred CCCCeEEEEeCC
Q 012410 378 GSAGSINVSSIL 389 (464)
Q Consensus 378 s~DgtIklWdi~ 389 (464)
.|++|++|++.
T Consensus 421 -~d~~i~v~~~~ 431 (433)
T 3bws_A 421 -LDHQIRVYRRD 431 (433)
T ss_dssp -TTTEEEEEEET
T ss_pred -CCCeEEEEEec
Confidence 39999999974
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=276.56 Aligned_cols=266 Identities=13% Similarity=0.059 Sum_probs=210.9
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 136 ~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
.|+|+|..+++ ...+ .++.+||..+|++..+++. . ..+..|+|| |||++|++++.|++|++||+
T Consensus 144 ~~~p~~~~~vs----~~~d------~~V~v~D~~t~~~~~~i~~---g--~~~~~v~~s-pdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 144 DLDLPNLFSVT----LRDA------GQIALVDGDSKKIVKVIDT---G--YAVHISRMS-ASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CCCGGGEEEEE----EGGG------TEEEEEETTTCCEEEEEEC---S--TTEEEEEEC-TTSCEEEEEETTSEEEEEET
T ss_pred ccCCCCEEEEE----EcCC------CeEEEEECCCceEEEEEec---C--cccceEEEC-CCCCEEEEECCCCeEEEEEC
Confidence 38899877666 3445 6999999999998654331 1 114589997 99999999999999999999
Q ss_pred --CCCeEEEEec-CCCEeEEEEeC----C---------CceeEEEEEcCCCcEEEEEeeC-----------CcceeeEEE
Q 012410 216 --KNYTMLYSIS-DKHVQEIKIRS----S---------SHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDF 268 (464)
Q Consensus 216 --~tg~~l~tl~-~~~V~~Vafs~----s---------~d~tIklWdi~tG~~l~tl~~~-----------~~~~~~V~F 268 (464)
++++++.++. ...++.|+|+| + .+.+|.|||.+|+++++++... ..++..|.|
T Consensus 208 ~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 208 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred cCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 8999999887 56799999998 6 3579999999999999998731 226788999
Q ss_pred EccCCCeEEE-EeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEE-Ee-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLV-KQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS-~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+++ +..+++ ..++++|.+||+.+++++. +...+...+..++|+|||++|++ +. |++|++||. +|+++.+++...
T Consensus 288 s~~-~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 288 SHE-HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp CSS-SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCC-CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 985 445554 5699999999999987654 12235567899999999997655 45 899999999 799999998633
Q ss_pred CCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC-------CeEEEEEccCCCCCCcccccCCCCC
Q 012410 344 LWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 344 ~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-------G~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
..|+.- ..++ ++|+ |.++||++. .|++|+|||+.+ ++|+++|.+|..
T Consensus 367 ~ph~g~-g~~~-~~p~~g~~~~s~~~----------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~------------- 421 (543)
T 1nir_A 367 TPHPGR-GANF-VHPKYGPVWSTSHL----------GDGSISLIGTDPKNHPQYAWKKVAELQGQGG------------- 421 (543)
T ss_dssp SBCCTT-CEEE-EETTTEEEEEEEBS----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCS-------------
T ss_pred CCCCCC-Cccc-CCCCCccEEEeccC----------CCceEEEEEeCCCCCchhcCeEEEEEEcCCC-------------
Confidence 222211 2233 5777 788888752 289999999999 999999999986
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEee-------CCCcEEeccC
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-------RHGLVHVWSN 464 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-------~DgtVrlWd~ 464 (464)
.+..|+|+|||+.|++++ .+++|+|||.
T Consensus 422 ---------------------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 422 ---------------------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp ---------------------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred ---------------------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 677899999999999998 3889999983
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=282.43 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=193.4
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~ti 163 (464)
+|..+.+. |++|++++.+|.+++|++. +++.+..+ .+|...|+++.|+|+ |+.|+++| .| +++
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s----~D------g~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCS----YD------GKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEE----TT------SCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEe----CC------CeE
Confidence 45555554 8999999999999999987 67788888 458889999999998 99999944 55 699
Q ss_pred EEEEeccCCC--CCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEE--EEe--cCCCEeEEEEe
Q 012410 164 KIEYIRRGKP--DSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML--YSI--SDKHVQEIKIR 235 (464)
Q Consensus 164 ~l~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l--~tl--~~~~V~~Vafs 235 (464)
++|++.+|+. ...+.. +...+.+|+|+ |+ |+.|++|+.|++|++||+.++.+. ..+ +...|.+++|+
T Consensus 80 ~vwd~~~~~~~~~~~~~~----h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAV----HSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EEEEEETTEEEEEEEECC----CSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred EEEECCCCcccccccccC----CCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence 9999998863 221221 22445589997 88 999999999999999999887432 222 24567777776
Q ss_pred CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC----cEEEEcccCCCceEEEEE
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----ELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg----~~l~~l~gh~~~v~sv~F 311 (464)
|..-.+. +. ....+ ++..+++++.|++|+|||++++ +++.++.+|...|.+++|
T Consensus 155 p~~~~~~-------~~--------------~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 155 PATIEED-------GE--------------HNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212 (753)
T ss_dssp CCC------------------------------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred Ccccccc-------cc--------------cccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe
Confidence 6411100 00 00011 3577888999999999999988 677889999999999999
Q ss_pred cCC---CcEEEEEe-CCeEEEEeC-CCc-----eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 312 LYE---NQLFLTFR-NRTVAVWNF-RGE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 312 spd---gqllaS~s-D~TIklWd~-~Ge-----~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+|+ |++|+|++ |++|++||+ +++ .+....+|... |++++|+|||++|++|+. ||
T Consensus 213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~l~~spdg~~l~s~s~-----------Dg 276 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DN 276 (753)
T ss_dssp CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC-----CCCEEECTTTCCEEEECS-----------SS
T ss_pred ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc-----eEEEEEcCCCCEEEEEcC-----------CC
Confidence 999 99999999 999999999 453 33444567766 789999999999999986 99
Q ss_pred eEEEEeCCCCeE
Q 012410 382 SINVSSILTGKC 393 (464)
Q Consensus 382 tIklWdi~tG~c 393 (464)
+|+|||+.++..
T Consensus 277 ~I~vwd~~~~~~ 288 (753)
T 3jro_A 277 KVTLWKENLEGK 288 (753)
T ss_dssp CEECCBCCSSSC
T ss_pred EEEEEecCCCCC
Confidence 999999986543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=252.84 Aligned_cols=276 Identities=10% Similarity=0.096 Sum_probs=213.0
Q ss_pred cCC----eEEeeec--ccccEee--EeecCCCceEEEEEEee--------------CCCEEEEEEeecCCCCcccceeeE
Q 012410 106 HSG----VCAAFSR--ETNRRIC--FLNVSPDEVIRSLFYNK--------------NNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 106 ~~g----~~~~~~~--~~g~~l~--~ln~~~~~~i~Sv~fs~--------------~g~~l~svSa~~sddfs~L~~~ti 163 (464)
.+| .+++||+ .+|+++. .+. +|...++.+++++ ++..++.++....++ ...++
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~----~~~~i 161 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQ----FPYEL 161 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSS----CCEEE
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCC----ccceE
Confidence 456 8999999 8999884 474 4777789888886 377788877442221 11599
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS- 238 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~- 238 (464)
++||+..+. ... +.. +...+.+++|| |||+.||+++.|+ +|++||+++|++..... ...+.+++|+|++
T Consensus 162 ~i~d~~g~~-~~~--l~~--~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 162 RVSDYDGYN-QFV--VHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp EEEETTSCS-CEE--EEE--ESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS
T ss_pred EEEcCCCCC-CEE--EeC--CCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC
Confidence 999986433 222 211 22455689998 9999999999986 99999999999865332 5679999999852
Q ss_pred ----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC-CC--eEEEEECCCCcEEEEcccCCCc
Q 012410 239 ----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 239 ----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~-D~--tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+..|++||+++|++ ..+..+...+.+++|+|+ +..|++++. |+ .|.+||+.++++. .+..|...
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~ 312 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ 312 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSE
T ss_pred EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCc
Confidence 34599999999987 456554467899999994 666777774 55 6777799998854 45556678
Q ss_pred eEEEEEcCCCcEEEEEe-C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 306 PSAFIFLYENQLFLTFR-N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
+.+++|||||++|++++ + .+|.+||+ +|++ ..+..|. . +.+++|+|||++|++++. |
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~-----~~~~~~spdg~~l~~~s~-----------~ 374 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L-----DETPSLAPNGTMVIYSSS-----------Q 374 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-----CEEEEECTTSSEEEEEEE-----------E
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-----cCCeEEcCCCCEEEEEEc-----------C
Confidence 89999999999999888 5 58999999 5776 5677774 4 789999999999999886 4
Q ss_pred C---eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 381 G---SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 381 g---tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
+ .|.+||+ +|++++.|.+|.. .|++++|||.-+
T Consensus 375 ~~~~~l~~~d~-~g~~~~~l~~~~~----------------------------------~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVST-DGRFKARLPATDG----------------------------------QVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEET-TSCCEEECCCSSS----------------------------------EEEEEEECCCCC
T ss_pred CCccEEEEEEC-CCCcEEEeeCCCC----------------------------------CCcCCccccccc
Confidence 4 8999997 5888999999986 899999999765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=255.01 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=196.1
Q ss_pred cccceEEEEec---cceeehhccCCeEEeeeccc----------ccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecC
Q 012410 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRET----------NRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYAS 152 (464)
Q Consensus 87 ~~s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~----------g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~s 152 (464)
....|..+.+. +++|++.+.+|.+++|++.+ .+.+..+. +|...|.++.|+|++. .|++ ++
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s----~~ 201 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLS----AS 201 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEE----EC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEE----Ee
Confidence 34456666665 57999999999999999877 67888885 5888899999999999 8888 45
Q ss_pred CCCcccceeeEEEEEeccCCCCCc----ccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCC
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSG----FALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK 227 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~----~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~ 227 (464)
.| ++++||++..+..... ...+. .+...+..|+|+ | ++.+|++++.|++|++||+.++..
T Consensus 202 ~d------g~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~-p~~~~~l~s~~~dg~i~i~d~~~~~~------- 266 (430)
T 2xyi_A 202 DD------HTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTRNNNT------- 266 (430)
T ss_dssp TT------SCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCSCS-------
T ss_pred CC------CeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEe-CCCCCEEEEEeCCCeEEEEECCCCCC-------
Confidence 56 7999999988654211 11111 133445589998 6 889999999999999999986521
Q ss_pred CEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCce
Q 012410 228 HVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTP 306 (464)
Q Consensus 228 ~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v 306 (464)
.+++.++..|...+.+++|+|.....+++++.|++|+|||+++ ++++.++.+|...|
T Consensus 267 ----------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v 324 (430)
T 2xyi_A 267 ----------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324 (430)
T ss_dssp ----------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE
T ss_pred ----------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE
Confidence 1222333333466788888884223466789999999999998 67889999999999
Q ss_pred EEEEEcCCCc-EEEEEe-CCeEEEEeCC---------------CceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEec
Q 012410 307 SAFIFLYENQ-LFLTFR-NRTVAVWNFR---------------GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCK 368 (464)
Q Consensus 307 ~sv~Fspdgq-llaS~s-D~TIklWd~~---------------Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~ 368 (464)
.+++|+|+++ +|++++ |++|+|||+. .+++..+.+|... |++++|+|+++ +|||++.
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC-----EEEEEECSSSTTEEEEEET
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC-----ceEEEECCCCCCEEEEEEC
Confidence 9999999995 799999 9999999993 2789999999988 89999999999 9999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCe
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
||+|+||++.++.
T Consensus 400 -----------dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 400 -----------DNIMQVWQMAENV 412 (430)
T ss_dssp -----------TSEEEEEEECHHH
T ss_pred -----------CCCEEEeEccccc
Confidence 9999999986654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=265.88 Aligned_cols=303 Identities=7% Similarity=0.052 Sum_probs=229.1
Q ss_pred ceEEEEec--cceeehhcc-CC-----eEEeeecccccEeeEeecCCC-----------------------ceEEEEEEe
Q 012410 90 KVIEIVAA--RDIVFALAH-SG-----VCAAFSRETNRRICFLNVSPD-----------------------EVIRSLFYN 138 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~-~g-----~~~~~~~~~g~~l~~ln~~~~-----------------------~~i~Sv~fs 138 (464)
.+..+.++ |+.|+..+. +| .+.+|++.+|+....+..... ..|.+++||
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 45566666 889998888 88 999999999988777644211 237899999
Q ss_pred eCCCEEEEEEeecCCCCcccceeeEEEEEeccC---CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG---KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 139 ~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G---~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
|||+.|++++ . .++.+|++.+| ++. ++.. +...+..++|| |||+.||+++. ++|++||+
T Consensus 118 pDg~~l~~~~----~-------~~i~~~d~~~~~~~~~~---~l~~--~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~ 179 (741)
T 2ecf_A 118 PDAQRLLFPL----G-------GELYLYDLKQEGKAAVR---QLTH--GEGFATDAKLS-PKGGFVSFIRG-RNLWVIDL 179 (741)
T ss_dssp TTSSEEEEEE----T-------TEEEEEESSSCSTTSCC---BCCC--SSSCEEEEEEC-TTSSEEEEEET-TEEEEEET
T ss_pred CCCCEEEEEe----C-------CcEEEEECCCCCcceEE---Eccc--CCcccccccCC-CCCCEEEEEeC-CcEEEEec
Confidence 9999999955 2 58999999988 542 1222 12445689998 99999999884 58999999
Q ss_pred CCCeEEEEecC--CC----------------EeEEEEeCCC--------ce-----------------------------
Q 012410 216 KNYTMLYSISD--KH----------------VQEIKIRSSS--------HV----------------------------- 240 (464)
Q Consensus 216 ~tg~~l~tl~~--~~----------------V~~Vafs~s~--------d~----------------------------- 240 (464)
.+|++...... .. +.+++|||++ |.
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 99988754432 11 4779998852 22
Q ss_pred ----eEEEEEcCC-CcEEEEEee--CCcceeeEEEEccCCCeEEEEe-----CCCeEEEEECCCCcEEEEcccCCC----
Q 012410 241 ----PLKILSIED-GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFM---- 304 (464)
Q Consensus 241 ----tIklWdi~t-G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s-----~D~tIkIWDv~tg~~l~~l~gh~~---- 304 (464)
.|.+||+++ |++...... +...+..++| | ++..|++.+ .+.+|.+||+.+|++..++.+|..
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 788999999 987665432 3456799999 8 466777654 467899999999999988877653
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~sv-afSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+.+++|||||+++++++ |++++||.+ +|+ +..|.+|... |.++ +|||||+.|+..+. .|
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~~~~s~dg~~l~~~~~----------~~ 401 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-----VDELLAVDEKAGLAYFRAG----------IE 401 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-----EEEEEEEETTTTEEEEEEC----------SS
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-----EEeEeEEeCCCCEEEEEEe----------CC
Confidence 346889999999999988 999999876 577 8899998655 7777 59999998765442 14
Q ss_pred C--eEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-
Q 012410 381 G--SINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH- 456 (464)
Q Consensus 381 g--tIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D- 456 (464)
+ +++||++.. |++++.|.+ .. .+.+++|||||+.|+....+
T Consensus 402 ~~~~~~l~~~~~~g~~~~~l~~-~~----------------------------------~~~~~~~spdg~~l~~~~~~~ 446 (741)
T 2ecf_A 402 SARESQIYAVPLQGGQPQRLSK-AP----------------------------------GMHSASFARNASVYVDSWSNN 446 (741)
T ss_dssp CTTCBEEEEEETTCCCCEECCC-SC----------------------------------SEEEEEECTTSSEEEEEEEET
T ss_pred CCceEEEEEEEcCCCCeeeccc-CC----------------------------------CceEEEECCCCCEEEEEecCC
Confidence 4 999999864 787888766 32 78899999999998876543
Q ss_pred ---CcEEecc
Q 012410 457 ---GLVHVWS 463 (464)
Q Consensus 457 ---gtVrlWd 463 (464)
..+.+|+
T Consensus 447 ~~p~~~~l~~ 456 (741)
T 2ecf_A 447 STPPQIELFR 456 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCeEEEEE
Confidence 3466664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=222.83 Aligned_cols=264 Identities=8% Similarity=0.016 Sum_probs=208.6
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCc
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSI 209 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~t 209 (464)
-+..++|+|+|+.+.+++..+. ..-+..++.+||..+|+....++. -..|..++|+ |||+ +++++..+++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s-~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN-----DLKPFGATIN-NTTQTLWFGNTVNSA 112 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE-----SSCCCSEEEE-TTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec-----CCCcceEEEC-CCCCEEEEEecCCCE
Confidence 4789999999999988663321 111126899999999887543221 1346689998 8998 5566677899
Q ss_pred EEEEeCCCCeEEEEecCC-----------CEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 210 YKVFDLKNYTMLYSISDK-----------HVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~~~-----------~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
|.+||+++++.+.++... .+.+++|+|+ .+..|.+||+++|+++.++..+......++|
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999999999998877632 2788999884 3578999999999999999844455789999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----CCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----h~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g 341 (464)
+| ++.++++++.|+.|.+||+.+++.+..+.. +...+.+++|+|||+.++.++ +++|.+||. +|+++..+..
T Consensus 193 s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99 467788888999999999999999887653 555788899999999666655 699999999 7999998876
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
+.. ..++|+|||++|+.++. .+++|.+||+.+|+.+.++..+.
T Consensus 272 ~~~-------~~~~~s~dg~~l~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~-------------------- 314 (353)
T 3vgz_A 272 PES-------LAVLFNPARNEAYVTHR----------QAGKVSVIDAKSYKVVKTFDTPT-------------------- 314 (353)
T ss_dssp SSC-------CCEEEETTTTEEEEEET----------TTTEEEEEETTTTEEEEEEECCS--------------------
T ss_pred CCC-------ceEEECCCCCEEEEEEC----------CCCeEEEEECCCCeEEEEEecCC--------------------
Confidence 542 35999999996655542 38999999999999999987654
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.+++++|+|||+.|+.++.+
T Consensus 315 ---------------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 ---------------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---------------EEEEEEECTTSCEEEEEEEC
T ss_pred ---------------CCCeEEEcCCCCEEEEEEcc
Confidence 67899999999988877665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=225.10 Aligned_cols=273 Identities=9% Similarity=0.023 Sum_probs=212.1
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
++|++...++.+.+||..+++.+..+...+.. .+.+++|+|+|+.+++++ ..+ .++.+||+.+|+....+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~------~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC------CeEEEEECCCCCeEeeE
Confidence 67888889999999999999999988654432 378999999998876643 333 58999999998875332
Q ss_pred cceee-ccccCceEEEEeCCCCcEEEEec------------CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----
Q 012410 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS----- 238 (464)
Q Consensus 178 ~l~~~-~~~~~~~~VaFs~pdGk~LaSgs------------~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~----- 238 (464)
..-.. .+-..|..++|+ |||+.|+.++ .|+.|.+||+++++.+..+. ...+..++|+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151 (337)
T ss_dssp ECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE
T ss_pred EcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEE
Confidence 21110 001256689997 8999998886 68999999999999988776 5678899999864
Q ss_pred -ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC-----------------------eEEEEECCCC
Q 012410 239 -HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE-----------------------NLQILDVRNA 293 (464)
Q Consensus 239 -d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~-----------------------tIkIWDv~tg 293 (464)
+..|.+||+++|+++..+... .....++|+|+ +..+++.+ .++ .|.+||+.++
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPD-VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECST-TTTTTTBCCCB-CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred eCCeEEEEECCCCcEeeeeecc-ccCCCceeCCC-ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 468999999999999888743 21234467674 45554443 333 4789999999
Q ss_pred cEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 294 ELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 294 ~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
++.. .+..|...+.+++|+|||+.++++ |++|.+||+ +|+++.++..+.. +++++|+|||++|+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~--- 299 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGA--- 299 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECTTSCEEEEESB---
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCc------eeeEEECCCCCEEEEEcC---
Confidence 9863 344566778899999999999888 799999999 6999988875532 578999999999998865
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 372 EDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|++|++||+.+|+.++++..+.
T Consensus 300 --------~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 300 --------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp --------SSEEEEEETTTCCEEEEEECGG
T ss_pred --------CCcEEEEECcCCcEEEEEEcCC
Confidence 8999999999999999997764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=241.90 Aligned_cols=274 Identities=12% Similarity=0.128 Sum_probs=195.4
Q ss_pred eEEEEEEeeCCCEEE-EEEeecCCCCcccceeeEEEEEe--ccCCCCCc--ccceeeccccCceEEEEeC----------
Q 012410 131 VIRSLFYNKNNDSLI-TVSVYASDNFSSLKCRSTKIEYI--RRGKPDSG--FALFESESLKWPGFVEFDD---------- 195 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~-svSa~~sddfs~L~~~ti~l~~i--~~G~~~~~--~~l~~~~~~~~~~~VaFs~---------- 195 (464)
.+....|++.|..++ +.+.....+ +---.+++|||+ .+|++..+ +..+. .++..++|+.
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~--G~~~~~i~lwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPD--GSYNVAYQLVDTGGAPGTVLAQNSYKVNK----QWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTT--SCEEEEEEEEECSSSTTCEEEEEEEEECG----GGHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCC--CeEEEEEEEEeCCCCCCCEEeeeEEEcCh----hHHHHHHHHHHHHHHHHHcC
Confidence 455666667765444 533322222 000038999999 99986422 22222 1122344431
Q ss_pred ---CCCcEEEEecCC------CcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Cc---eeEEEEEcCCCcEE
Q 012410 196 ---VNGKVLTYSAQD------SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SH---VPLKILSIEDGTVL 253 (464)
Q Consensus 196 ---pdGk~LaSgs~D------~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d---~tIklWdi~tG~~l 253 (464)
+.+..|++++.+ ++|++||+.++ ++..+. ...|.+++|||+ .+ .+|++||+++|++.
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 125677777664 79999999754 444443 678999999985 22 48999999999987
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TV 326 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TI 326 (464)
. +..+...+..++|+|+ +.+|+. ++.|+ .|++||+.++++ ..+.+|...+.+++|+|||+.|+.++ ++ .|
T Consensus 217 ~-l~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 Q-VASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp E-EECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred E-eecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 5 4444467899999994 566774 55555 499999999987 56777888899999999999988887 44 67
Q ss_pred EEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 327 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 327 klWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.+||+. |+ +..+..|..+ +.+++|||||++|++++.. ..+.+|++||+.+|++. .+..|.
T Consensus 294 ~~~d~~~~~-~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~--------~g~~~i~~~d~~~~~~~-~l~~~~---- 354 (415)
T 2hqs_A 294 YKVNINGGA-PQRITWEGSQ-----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGVQ-VLSSTF---- 354 (415)
T ss_dssp EEEETTSSC-CEECCCSSSE-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEETTTCCEE-ECCCSS----
T ss_pred EEEECCCCC-EEEEecCCCc-----ccCeEECCCCCEEEEEECc--------CCceEEEEEECCCCCEE-EecCCC----
Confidence 777985 55 4567777665 7899999999999998751 11469999999999984 565553
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC---cEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG---LVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg---tVrlWd~ 464 (464)
.+.+++|+|||+.|++++.|+ .|.+||.
T Consensus 355 -------------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 355 -------------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp -------------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred -------------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 678999999999999999888 7999973
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=259.90 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=196.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---- 207 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D---- 207 (464)
+.+++|+|||+++++ + .+ .++++|++.+|+....+..+.. ....+.+++|| |||+.||+++.|
T Consensus 19 ~~~~~~spdg~~~~~----~-~d------g~i~~~d~~~g~~~~~~~~~~~-~~~~v~~~~~S-pDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR----E-QK------GTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEIS-PDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBCCC----C-SS------SCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEEC-TTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEEEE----e-CC------CCEEEEECCCCcEEEEeccccc-cccccceEEEC-CCCCEEEEEecCccce
Confidence 678999999996644 2 34 5999999999987432221110 00125689998 999999999875
Q ss_pred -----CcEEEEeCCCCeEEEEec-----CCCEeEEEEeCCC-------ceeEEEEEcCCCcEEEEEeeCCc---------
Q 012410 208 -----SIYKVFDLKNYTMLYSIS-----DKHVQEIKIRSSS-------HVPLKILSIEDGTVLKVFYHLLH--------- 261 (464)
Q Consensus 208 -----~tiKlWdl~tg~~l~tl~-----~~~V~~Vafs~s~-------d~tIklWdi~tG~~l~tl~~~~~--------- 261 (464)
++|.|||+.+|++ ..+. ...|..++|||++ +..|.+||+.+|++.+....+..
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 7788999999987 3333 1248899999963 36899999999998876654222
Q ss_pred ---------ceeeEEEEccCCCeEEEEeCCC----------------------------------eEEEEECCCCcEEEE
Q 012410 262 ---------RNKKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELMEV 298 (464)
Q Consensus 262 ---------~~~~V~F~~~~~~~lla~s~D~----------------------------------tIkIWDv~tg~~l~~ 298 (464)
++..++|+| ++.+|+.++.|+ +|++||+.++++...
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE
Confidence 227899999 466777776443 899999999998666
Q ss_pred cccC------CCceEEEEEcCCCcEEEEEe-C----CeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEE
Q 012410 299 SRTE------FMTPSAFIFLYENQLFLTFR-N----RTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 299 l~gh------~~~v~sv~FspdgqllaS~s-D----~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaS 365 (464)
+..| ...+.+++|||||++|++.+ . .+|.+||+ +|++...+.. |..|+... ..+++|||||+.|+.
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-NEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC-CCCCEECTTSCSEEE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc-CCCceEcCCCCeEEE
Confidence 6654 56789999999999998775 2 58999999 6999887765 45562200 027899999998886
Q ss_pred E-ecCCCccccccCCCC------eEEEEe-CCCCe--EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 366 Y-CKAEPEDQWMEGSAG------SINVSS-ILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 366 g-s~~~~~~~~~~s~Dg------tIklWd-i~tG~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
. +. .|+ .|.+|| ..+|+ |+..|..+..
T Consensus 323 ~~~~----------~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~--------------------------------- 359 (723)
T 1xfd_A 323 IRAI----------PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW--------------------------------- 359 (723)
T ss_dssp EEEE----------CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS---------------------------------
T ss_pred EEec----------ccCCCcceeEEEEEeccCCCCccceeEeecCCe---------------------------------
Confidence 5 32 255 577778 44554 3666643322
Q ss_pred cCEEE-EEEcCCCCEEEEeeCC---CcEEecc
Q 012410 436 EDITS-LFYDEERNEIYTGNRH---GLVHVWS 463 (464)
Q Consensus 436 ~~V~s-lafspDg~~LaSgs~D---gtVrlWd 463 (464)
.+.. ++|||||+.||..+.+ ++++||+
T Consensus 360 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 360 -DVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -CEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -EEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 4544 6999999999866555 8899996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-26 Score=218.21 Aligned_cols=272 Identities=8% Similarity=0.084 Sum_probs=192.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-CCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~~~ 176 (464)
+.++++...++.+.+||..+|+.+..+..+ .... +++|+|+|+.|++++ ..+ .++.+||+.+|++ ...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~--~~~-------~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTS--DFC-------QTLVQIETQLEPPKVVA 78 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEE--STT-------CEEEEEECSSSSCEEEE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEe--CCC-------CeEEEEECCCCceeEEe
Confidence 445667778899999999999999988654 4446 999999999887755 333 4899999999886 321
Q ss_pred ccceeeccccCceE-EEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 177 FALFESESLKWPGF-VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 177 ~~l~~~~~~~~~~~-VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
+.. -..|.. ++|+ |||+.|+.+..++ +|++||+++++++.++.
T Consensus 79 ---~~~--~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------------- 125 (331)
T 3u4y_A 79 ---IQE--GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--------------------------- 125 (331)
T ss_dssp ---EEE--CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---------------------------
T ss_pred ---ccc--CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---------------------------
Confidence 221 134556 9997 8999998554442 78888877666554432
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEE-eCCCe-EEEEECCCCcEE-----EEcccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENEN-LQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~t-IkIWDv~tg~~l-----~~l~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
.. .....++|+|+ +.+++++ ..+++ |++||+.....+ +.+ .+...+..++|+|||+ ++++.. +
T Consensus 126 -----~~-~~~~~~~~spd-g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 126 -----IP-YDAVGIAISPN-GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp -----CC-TTEEEEEECTT-SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT
T ss_pred -----CC-CCccceEECCC-CCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC
Confidence 11 22356777773 4456665 46677 999998764432 222 2335689999999999 455666 9
Q ss_pred CeEEEEeC-CCce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEE
Q 012410 324 RTVAVWNF-RGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI 397 (464)
Q Consensus 324 ~TIklWd~-~Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl 397 (464)
++|.+||+ +|++ +.++..+.. +..++|+|||++|+.++. .+++|.+||+.+|+. +.++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~~~------~~~~~~spdg~~l~v~~~----------~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTNNL------PGTIVVSRDGSTVYVLTE----------STVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECSSC------CCCEEECTTSSEEEEECS----------SEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEECCCCcccceeeeccCCCC------CceEEECCCCCEEEEEEc----------CCCEEEEEECCCCceeeeccc
Confidence 99999999 6998 888886633 568999999997766543 278999999999998 6666
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
..+-. .. +.....+.+++|+|||+.|+.++ .+++|++||.
T Consensus 262 ~~~~~-~~--------------------------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 262 GHGLL-ID--------------------------PRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp ECCCC-CC--------------------------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccccc-cC--------------------------CCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 54421 00 00011235689999999987555 5679999984
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=255.45 Aligned_cols=278 Identities=11% Similarity=0.090 Sum_probs=207.8
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-----------------cc---cCc
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-----------------SL---KWP 188 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-----------------~~---~~~ 188 (464)
...+.+++|||||+.|++++. .++ +-...++.+|++.+|+....+...... .. ..+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~--~d~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRG--KDS--DRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEEC--CSS--CTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEec--cCC--CCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 345899999999999999663 111 001248999999999864211111000 00 113
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCC---eEEEEec--CCCEeEEEEeCCC-------ceeEEEEEcCCCcEEEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIRSSS-------HVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg---~~l~tl~--~~~V~~Vafs~s~-------d~tIklWdi~tG~~l~tl 256 (464)
..++|| |||+.|++++. ++|++||+.++ ++. .+. ...+..++|||++ +..|.+||+.+|++.+..
T Consensus 112 ~~~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 112 VDYQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CCCEEC-TTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred ceeEEC-CCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 479998 99999999886 89999999998 543 333 4679999999963 358999999999887655
Q ss_pred eeCCcc----------------eeeEEEEccCCCeEEEEeCCC---------------------------------eEEE
Q 012410 257 YHLLHR----------------NKKVDFIEQFNEKLLVKQENE---------------------------------NLQI 287 (464)
Q Consensus 257 ~~~~~~----------------~~~V~F~~~~~~~lla~s~D~---------------------------------tIkI 287 (464)
...... +..++|+| ++.+|++++.|+ +|.+
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 432221 47899999 467788877665 8999
Q ss_pred EECCC-CcEEEEcc--cCCCceEEEEEcCCCcEEEEEe------CCeEEEEeC-CCceEEEeccCCC-CcCCCCeeEEEE
Q 012410 288 LDVRN-AELMEVSR--TEFMTPSAFIFLYENQLFLTFR------NRTVAVWNF-RGELVTSFEDHLL-WHPDCNTNNIYI 356 (464)
Q Consensus 288 WDv~t-g~~l~~l~--gh~~~v~sv~FspdgqllaS~s------D~TIklWd~-~Ge~l~tl~gH~~-~~~~~~v~svaf 356 (464)
||+.+ +++..... +|...+.+++| |||+.|+.++ +.+|.+||+ +|++...+.+|.. |+. .+.+++|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--LHNSLRF 344 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--CCSCCEE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--cCCceEE
Confidence 99999 99877654 47788999999 9999998764 358999999 6999988887764 421 1468999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
||||++|++++. ||+++||.+. +|+ +..|.+|..
T Consensus 345 spdg~~~~~~~~-----------~g~~~l~~~~~~~~-~~~l~~~~~--------------------------------- 379 (741)
T 2ecf_A 345 LDDGSILWSSER-----------TGFQHLYRIDSKGK-AAALTHGNW--------------------------------- 379 (741)
T ss_dssp CTTSCEEEEECT-----------TSSCEEEEECSSSC-EEESCCSSS---------------------------------
T ss_pred CCCCeEEEEecC-----------CCccEEEEEcCCCC-eeeeeecce---------------------------------
Confidence 999999988875 8888888765 577 888888764
Q ss_pred cCEEEE-EEcCCCCEEE-EeeCCC--cEEecc
Q 012410 436 EDITSL-FYDEERNEIY-TGNRHG--LVHVWS 463 (464)
Q Consensus 436 ~~V~sl-afspDg~~La-Sgs~Dg--tVrlWd 463 (464)
.|.++ +|||||+.|+ +++.|+ +++||+
T Consensus 380 -~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 380 -SVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp -CEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred -EEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 78887 5999999875 566666 899996
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=252.62 Aligned_cols=293 Identities=11% Similarity=0.067 Sum_probs=208.4
Q ss_pred cceeehhccCCeEEeeecccccEe-eEeecCCC-----------------ceEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRI-CFLNVSPD-----------------EVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l-~~ln~~~~-----------------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~ 159 (464)
|+.+.....+| + +||+.+|+.+ ..+ ..+. ..|.+++|||| ..++.++ +
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~----~------ 100 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT----Q------ 100 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE----T------
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----C------
Confidence 45555556677 6 9999999884 444 2233 34999999999 5555522 2
Q ss_pred eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC-----CeEEEEec-C-CC----
Q 012410 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSIS-D-KH---- 228 (464)
Q Consensus 160 ~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t-----g~~l~tl~-~-~~---- 228 (464)
.++++||+.+|++. ++.. .-..+..++|| |||+.||++ .|++|++||+.+ |+...... . ..
T Consensus 101 -~~i~~~d~~~~~~~---~l~~--~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 101 -GGLVGFDMLARKVT---YLFD--TNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp -TEEEEEETTTTEEE---EEEC--CTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred -CEEEEEECCCCceE---EccC--CcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 58999999888753 2222 12344579998 999999995 789999999999 88765433 2 22
Q ss_pred ----------EeEEEEeCC-----------------------------------------CceeEEEEEcCCCcEEEEEe
Q 012410 229 ----------VQEIKIRSS-----------------------------------------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 229 ----------V~~Vafs~s-----------------------------------------~d~tIklWdi~tG~~l~tl~ 257 (464)
+.+++|||+ .+..|.+||+++|++.....
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 478888874 23679999999998766543
Q ss_pred --eCCcceeeEEEEccCCCeEEEEeCCC-----eEEEEECCCCcEEE-Ecc-cCCC---ceEEEEEcC--CCcEEEEEe-
Q 012410 258 --HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNAELME-VSR-TEFM---TPSAFIFLY--ENQLFLTFR- 322 (464)
Q Consensus 258 --~~~~~~~~V~F~~~~~~~lla~s~D~-----tIkIWDv~tg~~l~-~l~-gh~~---~v~sv~Fsp--dgqllaS~s- 322 (464)
.+...+..++|+| ++..|++++.|+ +|++||+.+|+..+ ... ++.. .+.+++|+| ||++|++++
T Consensus 253 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 2334578999999 456677777665 99999999994444 332 2222 235789999 999999998
Q ss_pred CCeEEEEeC--CCceEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCC----eEEEEeCCCCeEEE
Q 012410 323 NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAG----SINVSSILTGKCLA 395 (464)
Q Consensus 323 D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~s-vafSpDg~~LaSgs~~~~~~~~~~s~Dg----tIklWdi~tG~cl~ 395 (464)
|++++||++ +|++++.+.+|... +.+ ++|+|||+.|+..+. .++ .|..||+.+|+ +.
T Consensus 332 ~g~~~l~~~~~~~~~~~~l~~~~~~-----v~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~d~~~~~-~~ 395 (706)
T 2z3z_A 332 DGWNHLYLYDTTGRLIRQVTKGEWE-----VTNFAGFDPKGTRLYFEST----------EASPLERHFYCIDIKGGK-TK 395 (706)
T ss_dssp TSSCEEEEEETTSCEEEECCCSSSC-----EEEEEEECTTSSEEEEEES----------SSCTTCBEEEEEETTCCC-CE
T ss_pred CCccEEEEEECCCCEEEecCCCCeE-----EEeeeEEcCCCCEEEEEec----------CCCCceEEEEEEEcCCCC-ce
Confidence 999999987 58999999988654 666 899999998876654 133 77888887776 45
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----CcEEeccC
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLVHVWSN 464 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gtVrlWd~ 464 (464)
.+. |.. .+.+++|||||+.|+.+..+ +.|++||.
T Consensus 396 ~l~-~~~----------------------------------~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 396 DLT-PES----------------------------------GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ESC-CSS----------------------------------SEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred ecc-CCC----------------------------------ceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 553 443 78999999999999876544 56999973
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=215.21 Aligned_cols=264 Identities=8% Similarity=0.007 Sum_probs=189.3
Q ss_pred hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceee
Q 012410 104 LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFES 182 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~ 182 (464)
...++.+.+||..+++..... . |...|.++.|+|+|+.|++. .+ ..+.+|++.+ |+.......+.
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~~~----~~-------~~i~~~d~~~~~~~~~~~~~~~- 83 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW-Q-TPELFEAPNWSPDGKYLLLN----SE-------GLLYRLSLAGDPSPEKVDTGFA- 83 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-E-ESSCCEEEEECTTSSEEEEE----ET-------TEEEEEESSSCCSCEECCCTTC-
T ss_pred CCcceeEEEEeCCCCceeeec-c-CCcceEeeEECCCCCEEEEE----cC-------CeEEEEeCCCCCCceEeccccc-
Confidence 346789999998888877554 3 67779999999999999883 33 4899999998 87643222221
Q ss_pred ccccCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
...+..++|+ |||+.|++++ .|+.++||.+. +++++ .+.+...
T Consensus 84 --~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~------------------------------~~~~~-~~~~~~~- 128 (297)
T 2ojh_A 84 --TICNNDHGIS-PDGALYAISDKVEFGKSAIYLLP------------------------------STGGT-PRLMTKN- 128 (297)
T ss_dssp --CCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEE------------------------------TTCCC-CEECCSS-
T ss_pred --cccccceEEC-CCCCEEEEEEeCCCCcceEEEEE------------------------------CCCCc-eEEeecC-
Confidence 1234479997 8999999998 44566666542 22222 1222221
Q ss_pred cceeeEEEEccCCCeEE-EEeCCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC--CC
Q 012410 261 HRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~ll-a~s~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~--~G 333 (464)
..+..++|+|+ +..++ +++.|++++||++ .+++. ..+..|...+..++|+|||+.|+.++ |++++||++ .+
T Consensus 129 ~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 129 LPSYWHGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SSEEEEEECTT-SSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCccceEECCC-CCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 23566788874 55666 4678999999995 44554 56667778899999999999777654 899999997 58
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~ 411 (464)
+.+..+..|... +..++|+|||++|+.++....+.......++.|.+||+.+|+. +..+.+|..
T Consensus 207 ~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--------- 272 (297)
T 2ojh_A 207 SSVERITDSAYG-----DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG--------- 272 (297)
T ss_dssp SCEEECCCCSEE-----EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT---------
T ss_pred CCcEEEecCCcc-----cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc---------
Confidence 888999988765 7899999999999988751000000000136799999999876 555557775
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
.|.+++|+|||+.|++++.|.
T Consensus 273 -------------------------~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 -------------------------TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -------------------------TSCSCCBCTTSSEEEEEEECC
T ss_pred -------------------------ccccceECCCCCEEEEEEecc
Confidence 678899999999999888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=244.51 Aligned_cols=258 Identities=10% Similarity=-0.020 Sum_probs=193.5
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
+...|++|+|+|||+.||++|. . + .+++||++..|++.. ++......+.+++|| || ++|++++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~--~-~------g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~s-pd-~~l~~~~~~ 84 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGF--S-E------GSVNAYLYDGGETVK----LNREPINSVLDPHYG-VG-RVILVRDVS 84 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEE--E-T------TEEEEEEEETTEEEE----CCSSCCSEECEECTT-CS-EEEEEEECS
T ss_pred hccchheeecCCCCCeEEEEEc--c-C------CceeEEEEcCCCcEe----eecccccccccccCC-CC-eEEEEeccC
Confidence 3456999999999999999762 1 3 589999997776531 111111233479997 89 88887765
Q ss_pred --CCcEEEEeCCC---CeEEEEec-CCCEeEEEEeCCC---------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 207 --DSIYKVFDLKN---YTMLYSIS-DKHVQEIKIRSSS---------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 207 --D~tiKlWdl~t---g~~l~tl~-~~~V~~Vafs~s~---------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
+..++||.+.. |... .+. ...+...+|+|+. +..+.|||+++|++.+...+.. .+++|+|+
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD 160 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIR 160 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEE
T ss_pred CCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCC
Confidence 66778876543 3333 333 3334455666542 2344599999998877665432 89999994
Q ss_pred CCCeEEEEeCC----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC--eEEEEeC-CCceEEEeccCC
Q 012410 272 FNEKLLVKQEN----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 272 ~~~~lla~s~D----~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~--TIklWd~-~Ge~l~tl~gH~ 343 (464)
+..|++++.| .+|++||+.+|++. .+.+|...+.+++|||||+.|+++. |+ +|.+||+ +|++. .+.+|.
T Consensus 161 -G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 161 -GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp -TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred -CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 5666656655 78999999999976 5678888899999999999999877 88 9999999 58877 888887
Q ss_pred CCcCCCCeeEEE--------ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 344 LWHPDCNTNNIY--------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 344 ~~~~~~~v~sva--------fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
.. +.+++ |||||+++++++. |++++||++ |+++.+ +..
T Consensus 238 ~~-----~~~~~~~~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~--g~~~~~---~~~------------- 283 (582)
T 3o4h_A 238 KD-----FSSYRPTAITWLGYLPDGRLAVVARR-----------EGRSAVFID--GERVEA---PQG------------- 283 (582)
T ss_dssp SH-----HHHHCCSEEEEEEECTTSCEEEEEEE-----------TTEEEEEET--TEEECC---CSS-------------
T ss_pred cC-----hhhhhhccccceeEcCCCcEEEEEEc-----------CCcEEEEEE--CCeecc---CCC-------------
Confidence 76 56677 9999999999987 999999999 888762 222
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc---EEecc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL---VHVWS 463 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt---VrlWd 463 (464)
.|.+++|| ||+.+++++.+.+ |.+||
T Consensus 284 ---------------------~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 284 ---------------------NHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ---------------------EEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ---------------------ceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 68899999 9999999998866 66665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=250.95 Aligned_cols=297 Identities=10% Similarity=0.020 Sum_probs=209.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
|+++++ +.+|.+++||+.+|+....+.. |.. .|.+++|||||+.|++++...... ..-...++.||++.+|++.
T Consensus 28 g~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~ 104 (723)
T 1xfd_A 28 TEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIY-QHSYTGYYVLSKIPHGDPQ 104 (723)
T ss_dssp SCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCS-SSCCCSEEEEEESSSCCCE
T ss_pred CcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccce-eecceeeEEEEECCCCceE
Confidence 777766 7899999999999998888744 443 389999999999999966332110 0001158899999999861
Q ss_pred Ccccceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCE------------------eEEE
Q 012410 175 SGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------------------QEIK 233 (464)
Q Consensus 175 ~~~~l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V------------------~~Va 233 (464)
++.... +...+..++|| |||+.||+++. ++|++||+.+|++...... ..+ .+++
T Consensus 105 ---~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 105 ---SLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp ---ECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ---eccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 111111 11224579998 99999999886 7999999999988765442 222 7899
Q ss_pred EeCCC------------------------------------------ceeEEEEEcCCCcEEEEEeeC------Ccceee
Q 012410 234 IRSSS------------------------------------------HVPLKILSIEDGTVLKVFYHL------LHRNKK 265 (464)
Q Consensus 234 fs~s~------------------------------------------d~tIklWdi~tG~~l~tl~~~------~~~~~~ 265 (464)
|||++ +.+|++||+++|++...+..+ ...+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE
Confidence 98851 127999999999987777632 356789
Q ss_pred EEEEccCCCeEE-EEe----CCCeEEEEECCCCcEEEEccc-CCCceE----EEEEcCCCcEEEE--Ee-CC------eE
Q 012410 266 VDFIEQFNEKLL-VKQ----ENENLQILDVRNAELMEVSRT-EFMTPS----AFIFLYENQLFLT--FR-NR------TV 326 (464)
Q Consensus 266 V~F~~~~~~~ll-a~s----~D~tIkIWDv~tg~~l~~l~g-h~~~v~----sv~FspdgqllaS--~s-D~------TI 326 (464)
++|+|+ ++++ +.+ .+.+|++||+.+|++..++.. |..++. +++|||||+.|+. +. |+ .|
T Consensus 260 ~~~SpD--g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 260 VKWATS--TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp EEESSS--SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEeCC--CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 999995 4555 443 346899999999999887654 334433 7899999997775 34 77 57
Q ss_pred EEEe-CCCce---EEEeccCCCCcCCCCee-EEEECCCCCEEEEEecCCCccccccCCC--CeEEEEeCCCC--eEEEEE
Q 012410 327 AVWN-FRGEL---VTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKAEPEDQWMEGSA--GSINVSSILTG--KCLAKI 397 (464)
Q Consensus 327 klWd-~~Ge~---l~tl~gH~~~~~~~~v~-svafSpDg~~LaSgs~~~~~~~~~~s~D--gtIklWdi~tG--~cl~tl 397 (464)
.+|| .++.. +..|..+... +. .++|||||+.|+..+. .+ ++++||++..+ .+...|
T Consensus 338 ~~~d~~~~~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~~~~~~~~~~~l 402 (723)
T 1xfd_A 338 TVSSSQPNSSNDNIQSITSGDWD-----VTKILAYDEKGNKIYFLST----------EDLPRRRQLYSANTVGNFNRQCL 402 (723)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSC-----EEEEEEEETTTTEEEEEES----------SSCTTCCEEEEECSSTTCCCBCS
T ss_pred EEEeccCCCCccceeEeecCCeE-----EEeeeEEcCCCCEEEEEEc----------CCCCcceEEEEEeCCCCCCccee
Confidence 7788 45433 6667643222 33 4799999999987654 13 88999998643 234444
Q ss_pred cc---CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 398 NA---TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 398 ~g---h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
.+ |.. .|.+++|||||+.|+..
T Consensus 403 ~~~~~~~~----------------------------------~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 403 SCDLVENC----------------------------------TYFSASFSHSMDFFLLK 427 (723)
T ss_dssp STTSSSSC----------------------------------CCCEEEECTTSSEEEEE
T ss_pred cccccCCC----------------------------------CeEEEEECCCCCEEEEE
Confidence 33 332 67889999999988754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=212.23 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=184.1
Q ss_pred ceeehh-ccCCeEEeeecc-cc--cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCC
Q 012410 99 DIVFAL-AHSGVCAAFSRE-TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGK 172 (464)
Q Consensus 99 ~~l~~l-~~~g~~~~~~~~-~g--~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~ 172 (464)
++|++. ..++.+++|++. +| +.+..+ .+...+.+++|+|+|+.|++++ . ++ ..+.+|++. +|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~--~-~~------~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGV--R-PE------FRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEE--T-TT------TEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEee--c-CC------CeEEEEEecCCCCc
Confidence 344444 679999999974 45 334444 3556689999999999988855 2 33 589999997 666
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCc
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGT 251 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~ 251 (464)
... +........|..++|+ |||+.|+.++ .|++|++||+.+|.. ++
T Consensus 74 ~~~---~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~-----------------------------~~ 120 (343)
T 1ri6_A 74 LTF---AAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLP-----------------------------VG 120 (343)
T ss_dssp EEE---EEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEE-----------------------------EE
T ss_pred eee---ccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCcc-----------------------------cc
Confidence 421 1111112356689997 8999776554 588899999743321 11
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEE----cc-cCCCceEEEEEcCCCcEE-EEEe-
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV----SR-TEFMTPSAFIFLYENQLF-LTFR- 322 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~----l~-gh~~~v~sv~Fspdgqll-aS~s- 322 (464)
.+.++... ..+..++|+|+ +..+++++ .|++|++||+.+ ++.... +. .....+..++|+|||+.| +++.
T Consensus 121 ~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 121 VVDVVEGL-DGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEEECCC-TTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccccccCC-CCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 12222221 34577888883 56677776 899999999998 766432 22 233578899999999965 4555
Q ss_pred CCeEEEEeCC---Cce--EEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----
Q 012410 323 NRTVAVWNFR---GEL--VTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---- 389 (464)
Q Consensus 323 D~TIklWd~~---Ge~--l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~---- 389 (464)
+++|++||++ |++ +..+. +|... ..+..++|+|||++|+.++. .|++|++||+.
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~i~~s~dg~~l~v~~~----------~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIHITPDGRHLYACDR----------TASLITVFSVSEDGS 265 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEEECTTSSEEEEEET----------TTTEEEEEEECTTSC
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCcccccc---CCccceEECCCCCEEEEEec----------CCCEEEEEEEcCCCC
Confidence 9999999982 544 33332 22111 12568999999998875442 28999999998
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
+.+.+..+..+. .+.+++|+|||+.|+.++ .|+.|++|+
T Consensus 266 ~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 266 VLSKEGFQPTET-----------------------------------QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CEEEEEEEECSS-----------------------------------SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred ceEEeeeecCCC-----------------------------------ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 345666665543 466799999999988888 689999994
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-26 Score=255.22 Aligned_cols=310 Identities=12% Similarity=0.056 Sum_probs=215.6
Q ss_pred EEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
....++++.|+..+. +.+.+|++.+|+ ...+. .|...+.+++|||||+.||.+|.....+ ...++.+|++.+|
T Consensus 18 ~~~~~S~~~iaf~~~-~~l~~~~~~gg~-~~~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~----~~~~i~~~d~~~g 90 (1045)
T 1k32_A 18 LNPDIHGDRIIFVCC-DDLWEHDLKSGS-TRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENG 90 (1045)
T ss_dssp EEEEEETTEEEEEET-TEEEEEETTTCC-EEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTT
T ss_pred eCcEEeCCEEEEEEC-CcEEEEECCCCc-EEEee-eCCCcccCeEECCCCCEEEEEEeeccCC----CCCeEEEEECCCC
Confidence 334444666666554 689999976665 45563 4788899999999999999977542111 1158999998887
Q ss_pred CCCCcccceeecc---ccCceEEEEeCCCCcEEEEecCC------CcEEEEeCCCCeEEEEec-----------------
Q 012410 172 KPDSGFALFESES---LKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYSIS----------------- 225 (464)
Q Consensus 172 ~~~~~~~l~~~~~---~~~~~~VaFs~pdGk~LaSgs~D------~tiKlWdl~tg~~l~tl~----------------- 225 (464)
+.. .+..+.... ..++..++|| |||++|++++.| ..+.+||+.+|++.....
T Consensus 91 ~~~-~lt~~~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 91 EIK-RITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp EEE-ECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred CeE-EcccCCCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 742 122222111 0112589998 899988888755 357778887766431000
Q ss_pred ----------------------------------CCCEeEEEEeC-------CCceeEEEEEcCC-CcEEE---------
Q 012410 226 ----------------------------------DKHVQEIKIRS-------SSHVPLKILSIED-GTVLK--------- 254 (464)
Q Consensus 226 ----------------------------------~~~V~~Vafs~-------s~d~tIklWdi~t-G~~l~--------- 254 (464)
...|..++|++ +.|++++||.+.. |..++
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 248 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 248 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcc
Confidence 11223333333 2344555555431 22122
Q ss_pred ------------------------------EEee-----------CCcceeeEEEE-ccCCCeEEEEeCCCeEEEEECCC
Q 012410 255 ------------------------------VFYH-----------LLHRNKKVDFI-EQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 255 ------------------------------tl~~-----------~~~~~~~V~F~-~~~~~~lla~s~D~tIkIWDv~t 292 (464)
.+.. +...+..++|+ |+ +..+++++ +++|.+||+.+
T Consensus 249 ~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 249 PRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp EEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTS
T ss_pred eeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCC
Confidence 2221 11146788898 74 45566555 88999999998
Q ss_pred CcEEEEcccCCC-ceEEEEEcCCCcEEEEEe-CCeEE-EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 012410 293 AELMEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 369 (464)
Q Consensus 293 g~~l~~l~gh~~-~v~sv~FspdgqllaS~s-D~TIk-lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~ 369 (464)
++... +..|.. .+..++|+ ||+.|++++ +..|. +||+.+..+..+.+|... +..++|||||++||+++.
T Consensus 327 ~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~-----~~~~~~SpDG~~la~~~~- 398 (1045)
T 1k32_A 327 TYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDRNGKFAVVAND- 398 (1045)
T ss_dssp SBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-----EEEEEECTTSSEEEEEET-
T ss_pred CceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc-----eeeeEECCCCCEEEEECC-
Confidence 88665 556666 89999999 999999999 77888 889964445566688766 889999999999999886
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 370 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 370 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
|++|++||+.+|++...+.+|.. .|.+++|||||+.
T Consensus 399 ----------~~~v~~~d~~tg~~~~~~~~~~~----------------------------------~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 399 ----------RFEIMTVDLETGKPTVIERSREA----------------------------------MITDFTISDNSRF 434 (1045)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECSSS----------------------------------CCCCEEECTTSCE
T ss_pred ----------CCeEEEEECCCCceEEeccCCCC----------------------------------CccceEECCCCCe
Confidence 89999999999999998888876 7888999999999
Q ss_pred EEEeeCCC----------cEEeccC
Q 012410 450 IYTGNRHG----------LVHVWSN 464 (464)
Q Consensus 450 LaSgs~Dg----------tVrlWd~ 464 (464)
||+++.++ +|++||.
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEET
T ss_pred EEEEecCccccccCCCCCeEEEEEC
Confidence 99988765 9999983
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=212.31 Aligned_cols=242 Identities=9% Similarity=0.068 Sum_probs=188.1
Q ss_pred eeEEEEEeccCCCCCcccceeecccc-CceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CC------CEeE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLK-WPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQE 231 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~-~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~------~V~~ 231 (464)
.++.+||+.+|+....+. ..... .|..++|+ |||+.| ++++.+++|.+||+.+++.+.++. .. .+..
T Consensus 11 ~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVIT---IADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TEEEEEETTTTEEEEEEE---CTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CeEEEEECCCCcEEEEEE---cCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 689999999888643222 11101 46789997 899754 667778999999999999987766 22 6778
Q ss_pred EEEeCC--------------------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 232 IKIRSS--------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 232 Vafs~s--------------------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
++|+|+ .+..|.+||+++|+++..+... .....++|+|+ +.+++++ ++.|.+||+.
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~ 162 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARD-GSKLYGL--GRDLHVMDPE 162 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTT-SSCEEEE--SSSEEEEETT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCC-CCEEEEe--CCeEEEEECC
Confidence 899874 2588999999999999888742 55688999984 5556666 6899999999
Q ss_pred CCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC-----------------------eEEEEeC-CCceE-EEeccCCC
Q 012410 292 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-----------------------TVAVWNF-RGELV-TSFEDHLL 344 (464)
Q Consensus 292 tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~-----------------------TIklWd~-~Ge~l-~tl~gH~~ 344 (464)
+++++..+..+.. ...++|+|||+.++..+ ++ +|.+||. +|++. ..+..|..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 163 AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9999887765431 11337899999765544 44 4689999 68875 34555554
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
. +.+++|+|||++|+.+ +++|.+||+.+++.++.+..+.
T Consensus 242 ~-----~~~~~~s~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~----------------------- 280 (337)
T 1pby_B 242 F-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPLPH----------------------- 280 (337)
T ss_dssp C-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred c-----eeeEEECCCCCEEEEe-------------CCeEEEEECCCCcCcceecCCC-----------------------
Confidence 4 7789999999999886 5899999999999999887543
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+++++|+|||+.|++++.|+.|++||.
T Consensus 281 ------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 281 ------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ------------ceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5678999999999999999999999983
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=254.28 Aligned_cols=290 Identities=11% Similarity=0.021 Sum_probs=219.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccC
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKW 187 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~ 187 (464)
..++|....+..+..+ ..|...+.++.|+++ .++.++ ..+ .++.||.+.. |.....+..+ ..
T Consensus 184 ~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d--~l~~~~---~~d------g~~~l~~~~~~g~~~~~l~~~-----~~ 246 (1045)
T 1k32_A 184 RGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH--RIYFIT---DID------GFGQIYSTDLDGKDLRKHTSF-----TD 246 (1045)
T ss_dssp CCEEEEEEETTEEEEE-ECCSSCCEEEEEETT--EEEEEE---CTT------SSCEEEEEETTSCSCEECCCC-----CS
T ss_pred cCCEEEECCCCCeEEC-cCCCCcccceEEeCC--EEEEEE---ecc------CceEEEEEeCCCCcceEecCC-----CC
Confidence 5566654444556666 568888999999987 444433 334 5788998753 4322111111 11
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-------------CEeEEEEe-CC-------CceeEEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------HVQEIKIR-SS-------SHVPLKILS 246 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-------------~V~~Vafs-~s-------~d~tIklWd 246 (464)
...++|| |||+.||++ .|++|.+||+++. .+..+... .|.+++|| |+ .+..|.+|+
T Consensus 247 ~~~~~~S-pDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~ 323 (1045)
T 1k32_A 247 YYPRHLN-TDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQD 323 (1045)
T ss_dssp SCEEEEE-ESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEEC
T ss_pred cceeeEc-CCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEc
Confidence 2367998 899999988 4899999999554 44466542 58999999 86 356899999
Q ss_pred cCCCcEEEEEeeCCc-ceeeEEEEccCCCeEEEEeCCCeEE-EEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 247 IEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 247 i~tG~~l~tl~~~~~-~~~~V~F~~~~~~~lla~s~D~tIk-IWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+.+|+... +..+.. .+..++|+ ++..++..+.+..|. +||+.++++.... +|...+.+++|||||+.||+++ |
T Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 324 VSGTYVLK-VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp TTSSBEEE-CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEE-ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCC
Confidence 99888655 443334 77889998 466777788888898 9999998876655 8888999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+ +|++...+.+|... +.+++|||||++||+++... +-......+++|++||+.+|+ +..+.+|..
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~SpDG~~la~~~~~~-~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAM-----ITDFTISDNSRFIAYGFPLK-HGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSC-----CCCEEECTTSCEEEEEEEEC-SSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred CeEEEEECCCCceEEeccCCCCC-----ccceEECCCCCeEEEEecCc-cccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 99999999 69999888899887 77899999999999887510 000001124699999999998 778888865
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+.+++|+|||+.|++++.++.+++|+
T Consensus 473 ----------------------------------~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 473 ----------------------------------HDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp ----------------------------------BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred ----------------------------------ccCCceEcCCCCEEEEEecccCCcCcc
Confidence 788999999999999999999988886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=239.55 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=166.3
Q ss_pred ceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEec-C-CCEeEEEEeCC----------CceeEEEEEcC---CCc
Q 012410 188 PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS-D-KHVQEIKIRSS----------SHVPLKILSIE---DGT 251 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~-~-~~V~~Vafs~s----------~d~tIklWdi~---tG~ 251 (464)
+.+|+|+ |||+.||+++. |++++||++.+|++..... . ..|..++|||+ .+...+||.+. +|+
T Consensus 24 ~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~ 102 (582)
T 3o4h_A 24 KYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE 102 (582)
T ss_dssp EEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred hheeecC-CCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCc
Confidence 4489998 89999999988 9999999998887755333 2 46888888874 23445665443 243
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C----CeE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----RTV 326 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D----~TI 326 (464)
.. .+... +.....+|+|+.++.+++++.++.+.|||+.+|++.+...++. .+++|||||+.||+++ | ++|
T Consensus 103 ~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 103 EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEE
Confidence 33 33321 2334568888533455565544455599999999887766554 7899999999999887 7 799
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--eEEEEeCCCCeEEEEEccCCCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gh~~~ 403 (464)
.+||+ +|++ +.|.+|... +++++|||||++|+++.. |+ +|++||+.+|++. .+.+|..
T Consensus 178 ~~~d~~~g~~-~~l~~~~~~-----~~~~~~SpDG~~l~~~~~-----------~~~~~i~~~d~~~~~~~-~~~~~~~- 238 (582)
T 3o4h_A 178 FTSNLSSGGL-RVFDSGEGS-----FSSASISPGMKVTAGLET-----------AREARLVTVDPRDGSVE-DLELPSK- 238 (582)
T ss_dssp EEEETTTCCC-EEECCSSCE-----EEEEEECTTSCEEEEEEC-----------SSCEEEEEECTTTCCEE-ECCCSCS-
T ss_pred EEEcCCCCCc-eEeecCCCc-----cccceECCCCCEEEEccC-----------CCeeEEEEEcCCCCcEE-EccCCCc-
Confidence 99999 4665 578899877 789999999999996554 77 9999999999998 7877764
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEE--------EEcCCCCEEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL--------FYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl--------afspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++ .|||||+.+++++.|++++||+.
T Consensus 239 ---------------------------------~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 239 ---------------------------------DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ---------------------------------HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ---------------------------------ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 33334 49999999999999999999973
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=206.41 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=184.5
Q ss_pred cCceEEEEeCCCCcEEEEecC-------CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcC
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE 248 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~-------D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~ 248 (464)
..|..++|+ |||+.|..++. +++|.+||+++++.+.++. ...+..++|+|+ .+..|.+||++
T Consensus 41 ~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 445589998 89988877764 5689999999999988876 456788899874 45789999999
Q ss_pred CCcEEEEEeeCCc---------ceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE
Q 012410 249 DGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 249 tG~~l~tl~~~~~---------~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql 317 (464)
+|+++.++..... ....++|+|+ ++++++++ .|++|.+||+.+++.+..+..+...+..++|+|||+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 9999999874211 1578999994 66677754 5899999999999999988866667889999999999
Q ss_pred EEEEe-CCeEEEEeC-CCceEEEecc----CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 318 FLTFR-NRTVAVWNF-RGELVTSFED----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 318 laS~s-D~TIklWd~-~Ge~l~tl~g----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
|+.++ |+.|.+||. +|+.+.++.. +... +..++|+|||++|+.++. .+++|.+||+.+|
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~----------~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHF-----FINISLDTARQRAFITDS----------KAAEVLVVDTRNG 263 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC-----EEEEEEETTTTEEEEEES----------SSSEEEEEETTTC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc-----cceEEECCCCCEEEEEeC----------CCCEEEEEECCCC
Confidence 99988 999999999 6999988775 3333 678999999998877664 2699999999999
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
++++.+..... ..++|+|||+.|+.++ .+++|.+||.
T Consensus 264 ~~~~~~~~~~~------------------------------------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 264 NILAKVAAPES------------------------------------LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CEEEEEECSSC------------------------------------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEcCCC------------------------------------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 99998875431 3589999999766555 7999999983
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-24 Score=207.37 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=177.9
Q ss_pred CCeEEeee--cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-ec
Q 012410 107 SGVCAAFS--RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SE 183 (464)
Q Consensus 107 ~g~~~~~~--~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~ 183 (464)
++.+.+|. ..+|+....-...+......++|+|||+ |++++.. ..+ .++.+|++.+|+... +.. ..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-~~~------~~v~~~~~~~g~~~~---~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-DDE------GGIAAWQIDGQTAHK---LNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-TTE------EEEEEEEEETTEEEE---EEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-CCC------ceEEEEEecCCcEEE---eeeeec
Confidence 44455554 3456654321122344567899999999 6665532 234 689999998776421 111 11
Q ss_pred cccCceEEEEeCCCCcEEEEec-CCCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
....|..|+|+ |||++|++++ .|++|++||+. +|+... + ..+.... ..+. ......
T Consensus 84 ~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~-~-----~~~~~~~--~~p~-------------~~~~~~ 141 (347)
T 3hfq_A 84 PGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTL-T-----DTVQHSG--HGPR-------------PEQDGS 141 (347)
T ss_dssp ESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEE-E-----EEEECCC--CCSS-------------TTCSSC
T ss_pred CCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeee-c-----ceeecCC--CCCC-------------ccccCC
Confidence 23567799998 8999888877 78999999985 343211 0 0010000 0000 000113
Q ss_pred ceeeEEEEccCCCeEEEE-eCCCeEEEEECC-CCcEEEE--ccc-CCCceEEEEEcCCCcEEEE-Ee-CCeEEEEeCC--
Q 012410 262 RNKKVDFIEQFNEKLLVK-QENENLQILDVR-NAELMEV--SRT-EFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR-- 332 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~-tg~~l~~--l~g-h~~~v~sv~FspdgqllaS-~s-D~TIklWd~~-- 332 (464)
.+..++|+|+ +. ++++ ..+++|++||+. +|++... +.. ....+..++|+|||+.|+. .. +++|++|+++
T Consensus 142 ~~~~~~~spd-g~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 142 HIHYTDLTPD-NR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CEEEEEECTT-SC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEECCC-Cc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 4677899884 44 6665 478999999999 6765432 222 2246889999999995554 55 8999999983
Q ss_pred -Cce--EEEeccCCCC-cCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCC-CC--eEEEEEccCCCCC
Q 012410 333 -GEL--VTSFEDHLLW-HPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSIL-TG--KCLAKINATNCSP 404 (464)
Q Consensus 333 -Ge~--l~tl~gH~~~-~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~-tG--~cl~tl~gh~~~~ 404 (464)
|++ +..+..+..- .....+..++|||||++|+ +... +++|.+||+. +| +.+.++..|..
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~-- 286 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----------YNTLAVFAVTADGHLTLIQQISTEGD-- 286 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----------TTEEEEEEECGGGCEEEEEEEECSSS--
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----------CCEEEEEEECCCCcEEEeEEEecCCC--
Confidence 554 3344333210 0001267899999999884 4443 8999999997 33 66777766654
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-CcEEecc
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWS 463 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-gtVrlWd 463 (464)
.+.+++|||||+.||+++.+ ++|.+|+
T Consensus 287 --------------------------------~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 287 --------------------------------FPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp --------------------------------CCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------------------------------CcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 57789999999999988865 9999993
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=230.48 Aligned_cols=257 Identities=11% Similarity=0.120 Sum_probs=184.4
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC-Ccccceeeccc---------------cCceEEEEeCC
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-SGFALFESESL---------------KWPGFVEFDDV 196 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-~~~~l~~~~~~---------------~~~~~VaFs~p 196 (464)
..+.|. |+.+++. +.+ . | +||+.+|+.. . .++..... ..+.+++|| |
T Consensus 29 ~~~~w~--g~~~~~~----~~~------~-i-~~d~~tg~~~~~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-p 91 (706)
T 2z3z_A 29 VGLQWM--GDNYVFI----EGD------D-L-VFNKANGKSAQT--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDA-G 91 (706)
T ss_dssp TTCEEE--TTEEEEE----ETT------E-E-EEEC-------C--EEEEHHHHHTTC-----------CCCEEEEET-T
T ss_pred CCCcCc--CCeEEEE----eCC------c-E-EEECCCCcEeeE--EeechhHhhhhccchhccccccccCceeEEEC-C
Confidence 334555 6666663 334 3 7 9999999862 2 22221111 235689997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC-----CcEEEEEeeCCcc-
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED-----GTVLKVFYHLLHR- 262 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t-----G~~l~tl~~~~~~- 262 (464)
|+ .|+.+ .|++|++||+.++++..... ...+.+++|||+ .+..|++||+.+ |+..+........
T Consensus 92 d~-~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 92 RG-LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TT-EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CC-eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 95 55544 45999999999998876544 467888999996 457899999999 9887655432121
Q ss_pred -------------eeeEEEEccCCCeEEEEe---------------------------------CCCeEEEEECCCCcEE
Q 012410 263 -------------NKKVDFIEQFNEKLLVKQ---------------------------------ENENLQILDVRNAELM 296 (464)
Q Consensus 263 -------------~~~V~F~~~~~~~lla~s---------------------------------~D~tIkIWDv~tg~~l 296 (464)
+..++|+| ++.+|++++ .+.+|.+||+.++++.
T Consensus 170 ~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred EcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 48999999 466777776 4478999999999987
Q ss_pred EEcc--cCCCceEEEEEcCCCcEEEEEe-CC-----eEEEEeC-CCceEEEec--cCCCCcCCCCeeEEEECC--CCCEE
Q 012410 297 EVSR--TEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIYITS--DQDLI 363 (464)
Q Consensus 297 ~~l~--gh~~~v~sv~FspdgqllaS~s-D~-----TIklWd~-~Ge~l~tl~--gH~~~~~~~~v~svafSp--Dg~~L 363 (464)
.... .|...+.+++|||||+.|++++ |+ +|.+||+ +|+.++.+. .+..|+. .+.+++||| ||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~--~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE--PLHPLTFLPGSNNQFI 326 (706)
T ss_dssp ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC--CCSCCEECTTCSSEEE
T ss_pred eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC--ccCCceeecCCCCEEE
Confidence 7653 4667899999999999999988 86 9999999 684554443 3444421 136789999 99999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE-E
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS-L 441 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l 441 (464)
++++. |++++||++. +|+++..|.+|.. .|.+ +
T Consensus 327 ~~~~~-----------~g~~~l~~~~~~~~~~~~l~~~~~----------------------------------~v~~~~ 361 (706)
T 2z3z_A 327 WQSRR-----------DGWNHLYLYDTTGRLIRQVTKGEW----------------------------------EVTNFA 361 (706)
T ss_dssp EEECT-----------TSSCEEEEEETTSCEEEECCCSSS----------------------------------CEEEEE
T ss_pred EEEcc-----------CCccEEEEEECCCCEEEecCCCCe----------------------------------EEEeee
Confidence 98875 8999999886 8899999987764 6776 8
Q ss_pred EEcCCCCEEEEeeCC
Q 012410 442 FYDEERNEIYTGNRH 456 (464)
Q Consensus 442 afspDg~~LaSgs~D 456 (464)
+|||||+.|+.++.+
T Consensus 362 ~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 362 GFDPKGTRLYFESTE 376 (706)
T ss_dssp EECTTSSEEEEEESS
T ss_pred EEcCCCCEEEEEecC
Confidence 999999988765544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-26 Score=242.61 Aligned_cols=265 Identities=9% Similarity=0.132 Sum_probs=194.1
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc--cCceEEEEeCCCCcEEEEecC----
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQ---- 206 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~--~~~~~VaFs~pdGk~LaSgs~---- 206 (464)
.++.|+|||+++++ +. + .++++|++.+|++.. ++..... ..+.+++|| |||+.||+++.
T Consensus 19 ~~~~~s~dg~~~~~----~~-d------~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQ----SA-D------NNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEE----CT-T------SCEEEEESSSCCEEE---EECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEE----cC-C------CCEEEEEcCCCcEEE---EEccccccccceeeEEEC-CCCCeEEEEecCcee
Confidence 47899999965554 23 4 599999999998642 2221100 124589998 99999999887
Q ss_pred -----CCcEEEEeCCCCeEE--EEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe-eCCc----------
Q 012410 207 -----DSIYKVFDLKNYTML--YSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY-HLLH---------- 261 (464)
Q Consensus 207 -----D~tiKlWdl~tg~~l--~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~-~~~~---------- 261 (464)
|++|+|||+++|+++ ..+ ...+..++|||+ .+.+|++||+.+|++.+... ++..
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred EEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 799999999999884 223 356899999996 45799999999998865432 2111
Q ss_pred -------ceeeEEEEccCCCeEEEEeCCC----------------------------------eEEEEECCCCcEE---E
Q 012410 262 -------RNKKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELM---E 297 (464)
Q Consensus 262 -------~~~~V~F~~~~~~~lla~s~D~----------------------------------tIkIWDv~tg~~l---~ 297 (464)
....++|+| ++.+|+.++.|. +|++||+.+++++ +
T Consensus 163 ~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 114899999 466777776542 8999999999863 3
Q ss_pred E-----cccCCCceEEEEEcCCCcEEEEEe-C----CeEEEEe----C-CCceEEEe----ccCCCCcCCCCee-----E
Q 012410 298 V-----SRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWN----F-RGELVTSF----EDHLLWHPDCNTN-----N 353 (464)
Q Consensus 298 ~-----l~gh~~~v~sv~FspdgqllaS~s-D----~TIklWd----~-~Ge~l~tl----~gH~~~~~~~~v~-----s 353 (464)
. +.+|...+.+++|||||+++++.. . ..|.+|| . +|++...+ ++|..| +. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~ 316 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW-----AGGFFVST 316 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC-----SSSSSCCC
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce-----EccccCCc
Confidence 2 456888899999999999888854 2 2488899 8 58887777 588888 44 7
Q ss_pred EEECCCCCEEEEE-ecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 354 IYITSDQDLIISY-CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 354 vafSpDg~~LaSg-s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++|||||+.|+.. +. .+....|.+||+.+|+ ...|..+..
T Consensus 317 ~~~spdg~~l~~~~~~--------~~g~~~l~~~~~~~~~-~~~lt~~~~------------------------------ 357 (719)
T 1z68_A 317 PVFSYDAISYYKIFSD--------KDGYKHIHYIKDTVEN-AIQITSGKW------------------------------ 357 (719)
T ss_dssp CEECTTSSCEEEEEEC--------TTSCEEEEEESSCSTT-CEECSCSSS------------------------------
T ss_pred cEECCCCCeEEEEEEc--------cCCceEEEEEECCCCc-eEecccCce------------------------------
Confidence 8999999976552 22 1124578888988877 556655543
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCC-----CcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRH-----GLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~D-----gtVrlWd 463 (464)
.|..+.++ ||+.|+..+.+ ++++||.
T Consensus 358 ----~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 358 ----EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ----CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ----EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 67888888 88887766655 8899995
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=203.20 Aligned_cols=222 Identities=7% Similarity=0.004 Sum_probs=173.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC--CEeEEEEeCC---------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK--HVQEIKIRSS---------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~--~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ ++++++++++.|++|++||+++++.+.++. .. .+..++|+|+ .+..|.+||+++|+.+.++.
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 46776 799999999999999999999999998876 33 5889999884 45789999999999998887
Q ss_pred eCC------cceeeEEEEccCCCeEEEEeCC------------CeEEEEECCCCcE---EEEcccCCCceEEEEEcCCCc
Q 012410 258 HLL------HRNKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 258 ~~~------~~~~~V~F~~~~~~~lla~s~D------------~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdgq 316 (464)
... ..+..++|+| ++.++++++.| ++|.+||+.+++. +..+..+ ..+.+++|+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC
T ss_pred cccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc
Confidence 321 2268899998 46677777654 9999999999654 3344443 3688899999999
Q ss_pred EEEEEeCCeEEEEeC-CCceEEEeccCCCCcC------------------------------------------------
Q 012410 317 LFLTFRNRTVAVWNF-RGELVTSFEDHLLWHP------------------------------------------------ 347 (464)
Q Consensus 317 llaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~------------------------------------------------ 347 (464)
+++ ++ +.|.+||. +|+++.++..+....+
T Consensus 161 l~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYV-AG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEE-ES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEE-cc-CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 555 44 34999999 6999988875430000
Q ss_pred ---------------CCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 348 ---------------DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 348 ---------------~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
...+.+++|+| ||++|+.+ +++|.+||+.+|+.++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~---------- 295 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------------LNRLAKYDLKQRKLIKAANLDH---------- 295 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------------ESEEEEEETTTTEEEEEEECSS----------
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-------------cCeEEEEECccCeEEEEEcCCC----------
Confidence 00145678889 99999876 5799999999999999886443
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+++++|+|||+.|++++.+++|++||.
T Consensus 296 -------------------------~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 296 -------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp -------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred -------------------------CccceEECCCCCEEEEecCCCeEEEEec
Confidence 4568999999999999999999999983
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=206.19 Aligned_cols=309 Identities=9% Similarity=0.028 Sum_probs=195.4
Q ss_pred eecccccEeeEeecCCCceEEE-----EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccC
Q 012410 113 FSRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~S-----v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~ 187 (464)
.+..+|..+..+.. +.....+ ++|||||+.|+.++.. ++ ...+.+|++.+|+......... ..
T Consensus 15 ~~~~~g~~~~~lt~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g-----~~~l~~~d~~~g~~~~lt~~~~----~~ 82 (388)
T 3pe7_A 15 QDASTGAQVTRLTP-PDVTCHRNYFYQKCFTRDGSKLLFGGAF--DG-----PWNYYLLDLNTQVATQLTEGRG----DN 82 (388)
T ss_dssp ECTTTCCEEEECSC-TTSCEECCCTTSCCBCTTSCEEEEEECT--TS-----SCEEEEEETTTCEEEECCCSSC----BC
T ss_pred ecCCCCcceEEecC-CcccccchhhcCccCCCCCCEEEEEEcC--CC-----CceEEEEeCCCCceEEeeeCCC----CC
Confidence 45678888888854 4444566 8899999999996631 11 1357788888887642111111 11
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--EecCCCEeEEEE--eCC--------------------------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIKI--RSS-------------------------- 237 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--tl~~~~V~~Vaf--s~s-------------------------- 237 (464)
...++|| |||+.|++++.|.++.+||+.+|+... .++...+....+ +|+
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 83 TFGGFLS-PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccceEEc-CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 1256897 999999999999999999999998754 333444433333 332
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC------CCeEEEEECCCCcEEEEcccCC-Cce
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNAELMEVSRTEF-MTP 306 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~------D~tIkIWDv~tg~~l~~l~gh~-~~v 306 (464)
.+..|.+||+++|+......+. ..+..++|+|.++.+|+..+. +..|.++|+.+++......++. ..+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred hccCCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 3467999999999876655543 567899999933455655553 3478888877666544444332 357
Q ss_pred EEEEEcCCCcEEEEEe--CC----eEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 307 SAFIFLYENQLFLTFR--NR----TVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 307 ~sv~FspdgqllaS~s--D~----TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..++|||||+.|+..+ ++ +|.+||+ +|+ .+..+.++..... ....++|||||+.|+..... ......
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~--~~~~~~ 316 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS--NYDGSLMVGDGSDAPVDVQD--DSGYKI 316 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE--CTTSSEEEEEECCC--------------
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee--cCCCCeEccCCCcceeEeee--cccccc
Confidence 7889999999776654 22 3999999 577 4556665322100 01124799999998854310 000001
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RH 456 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~D 456 (464)
+.+..|.+||+.+|+. ..|..|......... .....+.+++|||||+.|+.++ .+
T Consensus 317 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEG-----------------------DRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp CCCCEEEEEETTTTEE-EEEEECCCCCCCBTT-----------------------BSSTTCCCCEECTTSSEEEEEECTT
T ss_pred CCCCEEEEEeccCCce-EEeccccCccccccc-----------------------ccccCCCCccCCCCCCEEEEEecCC
Confidence 2378999999988876 556555420000000 0001366789999999988766 58
Q ss_pred CcEEecc
Q 012410 457 GLVHVWS 463 (464)
Q Consensus 457 gtVrlWd 463 (464)
|..+||.
T Consensus 373 g~~~l~~ 379 (388)
T 3pe7_A 373 GKPALYL 379 (388)
T ss_dssp SSCEEEE
T ss_pred CceeEEE
Confidence 8888884
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-25 Score=237.74 Aligned_cols=308 Identities=10% Similarity=0.032 Sum_probs=208.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
|++++.. .+|.+.+|++.+|+....+.. +.. .+.+++|||||+.|++++..... +.+-.-.++++|++.+|++.
T Consensus 27 g~~~~~~-~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 27 QEYLHQS-ADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SEEEEEC-TTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEEC
T ss_pred CeEEEEc-CCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEEECCCCccc
Confidence 5555544 589999999999998877743 332 28999999999999997643210 00001169999999999873
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCE-----------------eEEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHV-----------------QEIKI 234 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V-----------------~~Vaf 234 (464)
...++ . ..+..++|| |||+.||+++ |++|++||+.+|++.....+ ..| .+++|
T Consensus 104 ~~~~l-~----~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 104 RGNEL-P----RPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp CSSCC-C----SSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred cceec-C----cccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 22222 1 234489998 9999999986 78999999999988653221 112 47899
Q ss_pred eCCC--------c----------------------------------eeEEEEEcCCCcEE---E-----EEeeCCccee
Q 012410 235 RSSS--------H----------------------------------VPLKILSIEDGTVL---K-----VFYHLLHRNK 264 (464)
Q Consensus 235 s~s~--------d----------------------------------~tIklWdi~tG~~l---~-----tl~~~~~~~~ 264 (464)
||++ | .+|++||+++|+++ + ++.++...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 8841 1 17899999999863 2 1223445679
Q ss_pred eEEEEccCCCeEEEEe---CC--CeEEEEE----CCCCcEEEEc----ccCCCceE-----EEEEcCCCcEEEE--Ee-C
Q 012410 265 KVDFIEQFNEKLLVKQ---EN--ENLQILD----VRNAELMEVS----RTEFMTPS-----AFIFLYENQLFLT--FR-N 323 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s---~D--~tIkIWD----v~tg~~l~~l----~gh~~~v~-----sv~FspdgqllaS--~s-D 323 (464)
+++|+|+ +++++.. .+ ..|.+|| +.+|++..++ .+|..++. .++|||||+.|+. +. |
T Consensus 257 ~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 257 WLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999995 5666642 22 3488899 9999988877 47777776 7899999995543 44 5
Q ss_pred C--eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeE-EEEEc
Q 012410 324 R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKC-LAKIN 398 (464)
Q Consensus 324 ~--TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G~c-l~tl~ 398 (464)
+ .|.+||+.|...+.|..+... |..+.++ ||+.|+..+... ...+++++||.+.. |+. ...|.
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~-----v~~~~~~-d~~~i~~~~~~~------~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWE-----AINIFRV-TQDSLFYSSNEF------EEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSC-----EEEEEEE-CSSEEEEEESCG------GGCTTCBEEEEEECSSSSCCEEESS
T ss_pred CceEEEEEECCCCceEecccCceE-----EEEEEEE-eCCEEEEEEecC------CCCCceEEEEEEeCCCCCCCceecc
Confidence 5 677778854336677766433 7788888 888887765400 01158899998753 421 22222
Q ss_pred ----cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCC--CcEEecc
Q 012410 399 ----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRH--GLVHVWS 463 (464)
Q Consensus 399 ----gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~D--gtVrlWd 463 (464)
+|.. .+.++.|||||+.|+. ++.+ .++.+||
T Consensus 403 ~~~~~~~~----------------------------------~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 403 CHLRKERC----------------------------------QYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp TTTTTTTB----------------------------------CBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred CccCCCCC----------------------------------ceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 2332 6788999999998773 4433 4577775
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=200.11 Aligned_cols=274 Identities=6% Similarity=-0.063 Sum_probs=191.7
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+.++++...++.+.+||..+++.+..+.......+.+++|+|+|+.+.+++ ..+ .++.+|++.+|+.....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~------~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC------CcEEEEeCCCCcEEEEE
Confidence 678888889999999999999999988664422478999999999776633 333 58999999888864322
Q ss_pred cceee--ccccCceEEEEeCCCCcEEEEecCC------------CcEEEEeCCCCeE---EEEec-CCCEeEEEEeCCC-
Q 012410 178 ALFES--ESLKWPGFVEFDDVNGKVLTYSAQD------------SIYKVFDLKNYTM---LYSIS-DKHVQEIKIRSSS- 238 (464)
Q Consensus 178 ~l~~~--~~~~~~~~VaFs~pdGk~LaSgs~D------------~tiKlWdl~tg~~---l~tl~-~~~V~~Vafs~s~- 238 (464)
.+... .....|..++|+ |||+.|+.++.| ++|.+||+++++. +..+. ...+.+++|+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 21110 001235689997 899999998866 8999999998553 34443 3468889999863
Q ss_pred ----ceeEEEEEcCCCcEEEEEeeCC--c----------------------ceeeEEEEccCCCeEEE-EeCCCeEEEEE
Q 012410 239 ----HVPLKILSIEDGTVLKVFYHLL--H----------------------RNKKVDFIEQFNEKLLV-KQENENLQILD 289 (464)
Q Consensus 239 ----d~tIklWdi~tG~~l~tl~~~~--~----------------------~~~~V~F~~~~~~~lla-~s~D~tIkIWD 289 (464)
+..|.+||+++|+++.++.... . ....++|.++ +..... ......+-.+|
T Consensus 161 l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 161 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD-DKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEE
T ss_pred EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC-CcCCccccccceeEEEEe
Confidence 2359999999999998886321 0 1233555432 100000 00011112244
Q ss_pred CCCCcEEE-EcccCCCceEEEEEcC-CCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 290 VRNAELME-VSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 290 v~tg~~l~-~l~gh~~~v~sv~Fsp-dgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
..+++... .+..+...+.+++|+| ||++++++ +++|.+||+ +|++++++..+.. +..++|+|||++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT------YYCVAFDKKGDKLYLG 312 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECSSSSCEEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC------ccceEECCCCCEEEEe
Confidence 44444221 1223556788999999 99999988 899999999 6999888874432 5689999999988887
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 367 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+. +++|++||+.+++++++++..
T Consensus 313 ~~-----------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 313 GT-----------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SB-----------SSEEEEEETTTTEEEEEEECS
T ss_pred cC-----------CCeEEEEeccccceeeeeecC
Confidence 65 899999999999999999765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-23 Score=198.48 Aligned_cols=219 Identities=13% Similarity=0.099 Sum_probs=165.8
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcE-EEEEeeC
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTV-LKVFYHL 259 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~-l~tl~~~ 259 (464)
.|+...+.++++++.|++|++||+++++++.++. ...+ .++|+|+ .+..|.+||+++|++ ..++..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 4654455668899999999999999999987765 3456 9999884 367999999999998 7777765
Q ss_pred CcceeeEEEEccCCCeEEEEeCC-C--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe-EEEEeCC-
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQEN-E--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT-VAVWNFR- 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D-~--tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T-IklWd~~- 332 (464)
......++|+|+ +.+++++..+ + +|++||+.+++++..+..+ ..+..++|+|||+ ++++.. +++ |.+|+++
T Consensus 83 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 83 QSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp SSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 445455999984 5566654444 3 9999999999999887765 4578999999998 455555 688 9999983
Q ss_pred -CceE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE---EEEEccCCCCC
Q 012410 333 -GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC---LAKINATNCSP 404 (464)
Q Consensus 333 -Ge~l----~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c---l~tl~gh~~~~ 404 (464)
|++. +.+... .. ...++|+|||++|+.++. .+++|++||+.+|++ +.++..+.
T Consensus 161 ~g~~~~~~~~~~~~~-~~-----~~~~~~spdg~~l~v~~~----------~~~~v~v~d~~~~~~~~~~~~~~~~~--- 221 (331)
T 3u4y_A 161 DGVLFDTGQEFISGG-TR-----PFNITFTPDGNFAFVANL----------IGNSIGILETQNPENITLLNAVGTNN--- 221 (331)
T ss_dssp TCCEEEEEEEEECSS-SS-----EEEEEECTTSSEEEEEET----------TTTEEEEEECSSTTSCEEEEEEECSS---
T ss_pred CCcEeecCCccccCC-CC-----ccceEECCCCCEEEEEeC----------CCCeEEEEECCCCcccceeeeccCCC---
Confidence 5442 222221 22 678999999996655543 289999999999999 88887653
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
.+..++|+|||+.|+.++ .++.|.+||.
T Consensus 222 --------------------------------~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 222 --------------------------------LPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp --------------------------------CCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred --------------------------------CCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 567799999999876655 5888999983
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=193.93 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=164.4
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC-CcEEEEEeeC-CcceeeEEEEccC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED-GTVLKVFYHL-LHRNKKVDFIEQF 272 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t-G~~l~tl~~~-~~~~~~V~F~~~~ 272 (464)
+++.|++|++||+.+++...... ...|.+++|+|+ .+..|.+||+++ |++...+.++ ...+..++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd- 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD- 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT-
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCC-
Confidence 46789999999999999875443 678999999985 456899999999 9888776643 356788999994
Q ss_pred CCeEEEEe--CCCeEEEEE--CCCCcEEEEcccCCCceEEEEEcCCCcEEE-EEe-CCeEEEEeC--CCceEEEeccCCC
Q 012410 273 NEKLLVKQ--ENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR-NRTVAVWNF--RGELVTSFEDHLL 344 (464)
Q Consensus 273 ~~~lla~s--~D~tIkIWD--v~tg~~l~~l~gh~~~v~sv~Fspdgqlla-S~s-D~TIklWd~--~Ge~l~tl~gH~~ 344 (464)
+..+++++ .|+.++||+ +.+++. +.+..+. .+..++|+|||+.|+ +++ |++++||++ .+..+..+..|..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 56677777 445566655 456663 4444443 488899999999887 666 999999996 4556677888876
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
. +.+++|+|||++|+.++. .|+.++||++. +++++..+..|..
T Consensus 174 ~-----~~~~~~s~dg~~l~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~--------------------- 217 (297)
T 2ojh_A 174 R-----NDGPDYSPDGRWIYFNSS----------RTGQMQIWRVRVDGSSVERITDSAY--------------------- 217 (297)
T ss_dssp C-----EEEEEECTTSSEEEEEEC----------TTSSCEEEEEETTSSCEEECCCCSE---------------------
T ss_pred c-----cccceECCCCCEEEEEec----------CCCCccEEEECCCCCCcEEEecCCc---------------------
Confidence 6 789999999998887653 28899999986 6778888877764
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCC-----------CcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-----------GLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-----------gtVrlWd~ 464 (464)
.+.+++|+|||+.||.++.| +.|.+||.
T Consensus 218 -------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 218 -------------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp -------------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred -------------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 78999999999999999876 56999973
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=197.83 Aligned_cols=307 Identities=9% Similarity=0.041 Sum_probs=196.7
Q ss_pred eeecccccEeeEeecCCC----ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccC
Q 012410 112 AFSRETNRRICFLNVSPD----EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~----~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~ 187 (464)
..|..+|+.+..+..... ..+.++.|||||+.|+.++..... ..+.++++.+|+... + +......
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~-------~~l~~~d~~~~~~~~---l-~~~~~~~ 82 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGN-------RNYYLLNLETQQAVQ---L-TEGKGDN 82 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSS-------CEEEEEETTTTEEEE---C-CCSSCBC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCC-------ceEEEEECCCCcEEE---e-ecCCCCc
Confidence 336678888877744211 226778999999999886533211 367888888877531 1 1111111
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe--cCCCEeE---E----------------EEeCC---------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQE---I----------------KIRSS--------- 237 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl--~~~~V~~---V----------------afs~s--------- 237 (464)
...++|| |||+.|++.+.+.++.+||+.+++..... ...+... | +++|+
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 83 TFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cccceEC-CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 1137887 99999999999999999999998865433 3333333 3 34442
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------CeEEEEECCCCcEEEEcccC-CCce
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTE-FMTP 306 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~tIkIWDv~tg~~l~~l~gh-~~~v 306 (464)
.+..|.+||+++|++.....+ ...+..++|+|.++.+|+..+.+ ..|.+||+.+++......++ ...+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred ccCCCcceEEEEECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 456899999999998776654 35678999999445556665533 46889998877765554432 2357
Q ss_pred EEEEEcCCCcEEEEEe-C-----CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCC---cc--
Q 012410 307 SAFIFLYENQLFLTFR-N-----RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEP---ED-- 373 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D-----~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~---~~-- 373 (464)
..++|||||+.|+..+ + ++|.+||+ +|+..... .... .. ++|+| ||++|+.++...| .+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS------EE-EEEECSSSSEEEEEECCC--------
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC------CC-CCccCCCCceEEEecCCcceeecccc
Confidence 8889999999877775 4 45999999 57654322 2211 22 88999 9999987652110 00
Q ss_pred ccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 374 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
......+..|.+||+.+|+. ..|..|........ .+....+.+++|+|||+.|+.+
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLD-----------------------GDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp --CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBT-----------------------TBSSTTCCCCEECTTSSEEEEE
T ss_pred ccccCCCCcEEEEecccCce-EEccCCCCcccccc-----------------------ccccCCCCCceEccCCCeEEEE
Confidence 00112368999999998885 45555542000000 0000024567899999999877
Q ss_pred eC-CCcEEecc
Q 012410 454 NR-HGLVHVWS 463 (464)
Q Consensus 454 s~-DgtVrlWd 463 (464)
+. ++...||.
T Consensus 369 s~~~~~~~l~~ 379 (396)
T 3c5m_A 369 SDFEGVPAIYI 379 (396)
T ss_dssp ECTTSSCEEEE
T ss_pred ecCCCCceEEE
Confidence 64 67777763
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=191.48 Aligned_cols=250 Identities=10% Similarity=0.136 Sum_probs=170.2
Q ss_pred eeEEEEEe--ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCC--CeE--EEEec--CCC
Q 012410 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN--YTM--LYSIS--DKH 228 (464)
Q Consensus 161 ~ti~l~~i--~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~t--g~~--l~tl~--~~~ 228 (464)
+.+.+|.+ .+|++...... ....|..++|| |||++|++++.| ++|.+|++.. |++ +.++. ...
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 67888876 56765321111 23567789997 899999999886 7999999865 654 33443 345
Q ss_pred EeEEEEeC-------CCceeEEEEEcCCCcEEEEE----eeC----------CcceeeEEEEccCCCeEEEEe-CCCeEE
Q 012410 229 VQEIKIRS-------SSHVPLKILSIEDGTVLKVF----YHL----------LHRNKKVDFIEQFNEKLLVKQ-ENENLQ 286 (464)
Q Consensus 229 V~~Vafs~-------s~d~tIklWdi~tG~~l~tl----~~~----------~~~~~~V~F~~~~~~~lla~s-~D~tIk 286 (464)
...+++.. ..+++|.+|++.++..+..+ .+. ..+...++|+|+ +..++++. .+++|+
T Consensus 102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-GKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-CCEEEEEeCCCCEEE
Confidence 66666621 25789999999755443322 111 122367999994 55577765 689999
Q ss_pred EEECCCCc-------E------EEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCce--EEEeccCCCCcCC
Q 012410 287 ILDVRNAE-------L------MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGEL--VTSFEDHLLWHPD 348 (464)
Q Consensus 287 IWDv~tg~-------~------l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~--l~tl~gH~~~~~~ 348 (464)
+|++.... + ......+...+..++|+|||+.++.++ +++|.+||+ +|++ +.++..+.....
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~- 259 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ- 259 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC-
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC-
Confidence 99887543 2 122233445789999999999765555 899999999 6765 334433221101
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCC-CCeEEEEeCC--CCe--EEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGS-AGSINVSSIL--TGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~-DgtIklWdi~--tG~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
....++|||||++|+.++. . +++|+||++. +|+ .+..+.. ..
T Consensus 260 -~~~~i~~spdg~~l~v~~~----------~~~~~i~v~~~~~~~g~~~~~~~~~~-g~--------------------- 306 (361)
T 3scy_A 260 -GSGDIHLSPDGKYLYASNR----------LKADGVAIFKVDETNGTLTKVGYQLT-GI--------------------- 306 (361)
T ss_dssp -CEEEEEECTTSSEEEEEEC----------SSSCEEEEEEECTTTCCEEEEEEEEC-SS---------------------
T ss_pred -CcccEEECCCCCEEEEECC----------CCCCEEEEEEEcCCCCcEEEeeEecC-CC---------------------
Confidence 1578999999999976654 2 5899999984 566 4555544 22
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
.+..++|||||+.|+.++ .+++|++|+
T Consensus 307 -------------~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 307 -------------HPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp -------------CCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred -------------CCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 567899999999999888 679999964
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-21 Score=181.00 Aligned_cols=224 Identities=11% Similarity=0.244 Sum_probs=180.8
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--------CCEeEEEEe-CC---------CceeEEEE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIR-SS---------SHVPLKIL 245 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--------~~V~~Vafs-~s---------~d~tIklW 245 (464)
.+..|..|+|+ |+|+++++.+.++.|++||.+ ++.+..+.. ..+..|+|. ++ .+..|.+|
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45667799997 899999998999999999986 777776642 468899994 42 16789999
Q ss_pred EcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~ 321 (464)
| .+|+.+.++. ........++|.++ +.++++ ..++.|.+|| .+|+.+..+. ++...|..++|+|+|+++++.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEc-CCCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 9 6799998886 23345689999884 456665 5789999999 4677777654 566789999999999999998
Q ss_pred e-CCeEEEEeCCCceEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEE
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKI 397 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~--~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl 397 (464)
+ +++|++||.+|+.+.++..+. .. ...|+|+|||+++++.+. ++ +|++|| .+|+.+.++
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~-----p~~i~~d~~G~l~v~~~~-----------~~~~i~~~~-~~g~~~~~~ 244 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH-----------NNFNLTIFT-QDGQLISAL 244 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS-----------SSCEEEEEC-TTSCEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEccCCccCC-----CcEEEECCCCCEEEEeCC-----------CCEEEEEEC-CCCCEEEEE
Confidence 8 999999999999999886543 33 689999999999998764 65 999999 589999999
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.. ...+.+++|+|||+.+++ +.|++|++|+
T Consensus 245 ~~~~~--------------------------------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 245 ESKVK--------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EESSC--------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred cccCC--------------------------------CCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 77643 015789999999997777 6799999997
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=198.20 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=163.2
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEec---CCCEeEEEEeC----------C-------------Cc
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKIRS----------S-------------SH 239 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~---~~~V~~Vafs~----------s-------------~d 239 (464)
.|..++|+ |||++|++++.+ +|.+||+. +|+++.... ...+..++|+| + .+
T Consensus 41 ~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 46689997 899999998888 99999998 898764322 12233333333 2 46
Q ss_pred eeEEEEEcC-CCcEEEEEee----CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECC-CCcEEE--Ecc--cCCCceEE
Q 012410 240 VPLKILSIE-DGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELME--VSR--TEFMTPSA 308 (464)
Q Consensus 240 ~tIklWdi~-tG~~l~tl~~----~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~-tg~~l~--~l~--gh~~~v~s 308 (464)
+++++|++. +|++..++.. ....+..++|+|+ +.+++++. .+++|++||+. +|++.. .+. .|...|+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 689999997 6887766552 3356789999994 55666665 57899999998 888643 333 24567999
Q ss_pred EEEcCCCcEEEEEe--CCeEEEEeC---CCceEE---E---ec----cCCC------CcCCCCeeEEE-ECCCCCEEEEE
Q 012410 309 FIFLYENQLFLTFR--NRTVAVWNF---RGELVT---S---FE----DHLL------WHPDCNTNNIY-ITSDQDLIISY 366 (464)
Q Consensus 309 v~FspdgqllaS~s--D~TIklWd~---~Ge~l~---t---l~----gH~~------~~~~~~v~sva-fSpDg~~LaSg 366 (464)
++|+|||+.|+.++ +++|.+|++ +|++.. + +. +|.. + +..++ |||||++|+++
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY-----RADVCALTFSGKYMFAS 272 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE-----EEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc-----cccEEEECCCCCEEEEE
Confidence 99999999887766 789999976 477632 2 22 2221 2 67899 99999998876
Q ss_pred ecCCCccccccCCC----CeEEEEeCC-CCeEEEE---EccCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 367 CKAEPEDQWMEGSA----GSINVSSIL-TGKCLAK---INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 367 s~~~~~~~~~~s~D----gtIklWdi~-tG~cl~t---l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
+. +.+ ++|++|++. +|+.... +..+.. .+
T Consensus 273 ~~---------~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~----------------------------------~~ 309 (365)
T 1jof_A 273 SR---------ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS----------------------------------GG 309 (365)
T ss_dssp EE---------ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC----------------------------------CT
T ss_pred CC---------CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC----------------------------------Cc
Confidence 54 112 399999996 7886542 333432 34
Q ss_pred EEEEEcC---CCCEEEEeeCC-CcEEecc
Q 012410 439 TSLFYDE---ERNEIYTGNRH-GLVHVWS 463 (464)
Q Consensus 439 ~slafsp---Dg~~LaSgs~D-gtVrlWd 463 (464)
.+++|+| ||+.||+++.+ ++|+||+
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 5689999 89999999875 9999996
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=185.66 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=175.8
Q ss_pred cCCeEEeeec--ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--CCCCCccccee
Q 012410 106 HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFE 181 (464)
Q Consensus 106 ~~g~~~~~~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~~~~l~~ 181 (464)
.++.+.+|.+ .+|+....... +......++|+|||+.|++++.....+ .++.+|++.. |++. .+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~---~~~~ 94 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLH---LLNT 94 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEE---EEEE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEE---EeeE
Confidence 4567777754 56665443333 556678899999999999977432233 5889999865 5532 1111
Q ss_pred ec-cccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEe------c----------CCCEeEEEEeCC------
Q 012410 182 SE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSI------S----------DKHVQEIKIRSS------ 237 (464)
Q Consensus 182 ~~-~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl------~----------~~~V~~Vafs~s------ 237 (464)
.. .-..|..++| ||+.|+.++ .|++|.+|++.+...+..+ . ...+.+++|+|+
T Consensus 95 ~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 95 QKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred eccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 11 1234556777 677666555 6889999999754332111 1 123578999985
Q ss_pred ---CceeEEEEEcCCCcE------E------EEEe-eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEE--E-
Q 012410 238 ---SHVPLKILSIEDGTV------L------KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELM--E- 297 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~------l------~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l--~- 297 (464)
.+..|++|++..+.. + ..+. ........++|+|+ +..++++. .+++|++||+.+|++. .
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 356899998875431 1 1222 22244578999994 55666666 7999999999988762 2
Q ss_pred --EcccCCCceEEEEEcCCCcEEEEEe-C--CeEEEEeCC---Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 298 --VSRTEFMTPSAFIFLYENQLFLTFR-N--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 298 --~l~gh~~~v~sv~FspdgqllaS~s-D--~TIklWd~~---Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
....+...+..++|+|||++|+.+. + ++|+||+++ |+ .+..+.. ... +..++|+|||++|+.++
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~-----~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH-----PRNFIITPNGKYLLVAC 324 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC-----CCEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC-----CceEEECCCCCEEEEEE
Confidence 3345556788999999999886665 5 799999983 66 4555554 233 67899999999998887
Q ss_pred cCCCccccccCCCCeEEEE--eCCCCeEEEE
Q 012410 368 KAEPEDQWMEGSAGSINVS--SILTGKCLAK 396 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklW--di~tG~cl~t 396 (464)
. .+++|.+| |..+|+....
T Consensus 325 ~----------~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 325 R----------DTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp T----------TTTEEEEEEECTTTCCEEEC
T ss_pred C----------CCCCEEEEEEECCCCcEeec
Confidence 4 27999995 6678887554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-21 Score=190.60 Aligned_cols=285 Identities=9% Similarity=0.064 Sum_probs=200.7
Q ss_pred cCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec--
Q 012410 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-- 183 (464)
Q Consensus 106 ~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-- 183 (464)
.++.+.+||..+|+.+..+.. +... .++|+|||+.|.+++.+.+...++-...++.+||+.+++..+..++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 467999999999999998855 3343 89999999999997654322111111268999999988876554432110
Q ss_pred cccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEE-ecCCCEeEEEEeCC---------CceeEEEEEcCC-C
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKIRSS---------SHVPLKILSIED-G 250 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~s---------~d~tIklWdi~t-G 250 (464)
.-.+|..++|| |||++|..+.. +++|.+||+++++.+.+ +.....+.+.+.|. .|+.+.+|++++ |
T Consensus 106 ~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 12467789997 99999987764 68999999999999988 76444444555442 467888888865 7
Q ss_pred cEEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEcc--c----CC----CceEEEEEc
Q 012410 251 TVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR--T----EF----MTPSAFIFL 312 (464)
Q Consensus 251 ~~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~--g----h~----~~v~sv~Fs 312 (464)
++..... -..+. ..+.++++ +..++..+.+++|.++|+..++. +..+. . +. .....++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SEEEEEECCCCSCTTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred cEeeeccccceEcCCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 7763321 00011 12334453 45666677889999999876642 22211 0 00 111237899
Q ss_pred CCCcEEEEE-e-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 313 YENQLFLTF-R-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 313 pdgqllaS~-s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
||++.+..+ + + .+|.+||. +++.++++..|. . ++++|||||++|++++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p------~~ia~spdg~~l~v~n------------ 323 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-A------LSMTIDQQRNLMLTLD------------ 323 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-C------CEEEEETTTTEEEEEC------------
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-e------eEEEECCCCCEEEEeC------------
Confidence 996655443 3 2 38999999 799999999886 3 5899999999999764
Q ss_pred CCeEEEEeCCCC--eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 380 AGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 380 DgtIklWdi~tG--~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
+++|.+||..|| ++++++.++.. .-+.++|+|||.+
T Consensus 324 ~~~v~v~D~~t~~l~~~~~i~~~G~----------------------------------~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 324 GGNVNVYDISQPEPKLLRTIEGAAE----------------------------------ASLQVQFHPVGGT 361 (361)
T ss_dssp SSCEEEEECSSSSCEEEEEETTSCS----------------------------------SEEEEEECCCSCC
T ss_pred CCeEEEEECCCCcceeeEEeccCCC----------------------------------CcEEEEecCCCCC
Confidence 489999999999 99999976654 5678999999974
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=217.89 Aligned_cols=245 Identities=8% Similarity=0.053 Sum_probs=172.6
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc-cCceEEEEeCCCCcEEEEecCC---
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL-KWPGFVEFDDVNGKVLTYSAQD--- 207 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~-~~~~~VaFs~pdGk~LaSgs~D--- 207 (464)
..++.|+|||+++++ + + .++++|++.+|++...+..++.... .-...++|| |||+.|++++.|
T Consensus 19 ~~~~~w~~dg~~~~~----~--~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK----Q--E------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQ 85 (740)
T ss_dssp CCCEEECSSSEEEEE----E--T------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEEC
T ss_pred ccccEECCCCcEEEE----c--C------CcEEEEECCCCceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeee
Confidence 568999999988877 2 3 5999999999997432222221110 001238998 999999999987
Q ss_pred ------CcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEE-eeCC-----------
Q 012410 208 ------SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVF-YHLL----------- 260 (464)
Q Consensus 208 ------~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl-~~~~----------- 260 (464)
+.|.|||+++|++.. +. ...++.++|||+ .+..|.+||+.+|++.+.. .+..
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp SSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred EEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 445699999999754 33 467999999996 4578999999999876522 1211
Q ss_pred ------cceeeEEEEccCCCeEEEEeCCC------------------------------------eEEEEECCC---C--
Q 012410 261 ------HRNKKVDFIEQFNEKLLVKQENE------------------------------------NLQILDVRN---A-- 293 (464)
Q Consensus 261 ------~~~~~V~F~~~~~~~lla~s~D~------------------------------------tIkIWDv~t---g-- 293 (464)
.....++|+| ++.+|+..+.|. +|+|||+.+ |
T Consensus 165 ~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred ccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 1224589999 466677665332 588999999 8
Q ss_pred -cEEEEcc-----cCCCceEEEEEcCCCcEEEEEe-----CCeEEEEeC-CCc----eEE--Ee--ccCCCCcCCCCeeE
Q 012410 294 -ELMEVSR-----TEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNF-RGE----LVT--SF--EDHLLWHPDCNTNN 353 (464)
Q Consensus 294 -~~l~~l~-----gh~~~v~sv~FspdgqllaS~s-----D~TIklWd~-~Ge----~l~--tl--~gH~~~~~~~~v~s 353 (464)
++++... +|...+.+++|||||++++... +.+|.+||+ +|+ |.. ++ ++|..|+......+
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 5555543 4778899999999999777654 237999999 688 543 33 77988843100127
Q ss_pred EEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 354 IYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 354 vafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
++|||||+.|+ ..+.. +....|.+||+.+|++.+.-.+
T Consensus 324 p~fspDG~~l~~~~s~~--------~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNE--------EGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp CEECTTSSEEEEEEECT--------TSCEEEEEEETTCSSCEESCCS
T ss_pred ceEcCCCCEEEEEEEcC--------CCceEEEEEECCCCceEecccC
Confidence 89999999988 77641 2256899999988877654333
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-21 Score=183.32 Aligned_cols=222 Identities=11% Similarity=0.126 Sum_probs=157.0
Q ss_pred CCcEEEEecCCCcEEEEeCC-CCe--EEEEec-CCCEeEEEEeCC---------CceeEEEEEcC--CCcE--EEEEeeC
Q 012410 197 NGKVLTYSAQDSIYKVFDLK-NYT--MLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE--DGTV--LKVFYHL 259 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~-tg~--~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~--tG~~--l~tl~~~ 259 (464)
+..++++++.|++|++||+. +|+ .+.++. ...+..++|+|+ .++.|++|++. +|+. +.++...
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 34456666889999999995 553 344444 567889999884 23899999998 7774 3455533
Q ss_pred CcceeeEEEEccCCCeEEEEe-CCCeEEEEEC---CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV---RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv---~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~ 332 (464)
..+..++|+|+ +..+++++ .|++|++||+ .+++.+..+.++. .+.+++|+|||+.|++++ |++|++||+ +
T Consensus 84 -~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 -GSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -SCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -CCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 36789999984 56677765 6899999999 5556667766654 588999999998766654 999999999 5
Q ss_pred -CceEE----EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CCeE--EEEEccCCCC
Q 012410 333 -GELVT----SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKC--LAKINATNCS 403 (464)
Q Consensus 333 -Ge~l~----tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG~c--l~tl~gh~~~ 403 (464)
|++.. .+..+.. ..+..++|+|||++|+.++. .+++|++||+. +|+. +..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~----~~~~~~~~~pdg~~l~~~~~----------~~~~i~~~~~~~~~g~~~~~~~~~~~~~- 225 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEG----AGPRHMVFHPNEQYAYCVNE----------LNSSVDVWELKDPHGNIECVQTLDMMPE- 225 (343)
T ss_dssp TSCEEEEEEEEEECSTT----CCEEEEEECTTSSEEEEEET----------TTTEEEEEESSCTTSCCEEEEEEECSCT-
T ss_pred CCceeeecccccccCCC----CCcceEEECCCCCEEEEEeC----------CCCEEEEEEecCCCCcEEEEeeccccCc-
Confidence 76543 3333322 12678999999997766552 28999999994 4543 333321110
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.. .....+.+++|+|||+.|+ +++.|+.|++||
T Consensus 226 --~~-------------------------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 226 --NF-------------------------SDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp --TC-------------------------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --cc-------------------------cccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 00 0011677899999999887 666899999997
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=186.88 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=181.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCC------------------------CcEEEEeCCCCeEEEEecC---CCEeEEEEeCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSISD---KHVQEIKIRSS 237 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D------------------------~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s 237 (464)
++.|..|+|+ |+|+++++.+.+ ++|.+||..+|+++..+.. .....|+|+|+
T Consensus 23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4566789997 899999998888 4799999999999877652 46889999874
Q ss_pred --------CceeEEEEEcCCCc--EEEEEe---------eCCcceeeEEEEccCCCeEEEE-e-CCCeEEEEECCCCcEE
Q 012410 238 --------SHVPLKILSIEDGT--VLKVFY---------HLLHRNKKVDFIEQFNEKLLVK-Q-ENENLQILDVRNAELM 296 (464)
Q Consensus 238 --------~d~tIklWdi~tG~--~l~tl~---------~~~~~~~~V~F~~~~~~~lla~-s-~D~tIkIWDv~tg~~l 296 (464)
.+..|++||.. |+ .+.++. .+......|+|.|. ++.++++ + .++.|++|| .+|+++
T Consensus 102 g~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp SCEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 45789999985 55 677763 22335689999884 3556554 4 599999999 789988
Q ss_pred EEcc----------cCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeCC-CceEEEecc--CCCCcCCCCeeEEEECCCCC
Q 012410 297 EVSR----------TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 297 ~~l~----------gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~~-Ge~l~tl~g--H~~~~~~~~v~svafSpDg~ 361 (464)
.++. ++...|..++|+|+ |+++++.+ +++|++||.+ |+++.++.. +... +.+++|+| |.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~-----~~~~~~~p-g~ 252 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN-----VFAISYIP-GF 252 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC-----EEEEEEET-TE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC-----cceeeecC-CE
Confidence 8774 34566999999999 89999988 9999999995 999999954 3333 78999999 55
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc---cCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN---ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~---gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
.+++.+. .-.+.+.+.+|++||+.+|+++.++. ++.. ..
T Consensus 253 ~~~~~g~----~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~----------------------------------~p 294 (329)
T 3fvz_A 253 LFAVNGK----PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD----------------------------------MP 294 (329)
T ss_dssp EEEEECC----CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS----------------------------------SE
T ss_pred EEEeCCC----EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC----------------------------------Ce
Confidence 5554332 11223347799999999999999984 3332 78
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 439 TSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 439 ~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+|+|+|||+.+++...++.|++|+
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEe
Confidence 9999999999999999999999997
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=219.49 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=170.1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-----C--EeEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----H--VQEIK 233 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-----~--V~~Va 233 (464)
+.+.|+++..|... .+..+|+|+ |||++|+++ |++|++||+++|++...+..+ . ..+++
T Consensus 3 ~~~tl~~~~~~~~~-----------~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYR-----------LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSC-----------CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCccc-----------ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 44556666665431 122279997 899999986 999999999999998776632 1 24578
Q ss_pred EeCCC--------c---------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE
Q 012410 234 IRSSS--------H---------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 234 fs~s~--------d---------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
|||+. + ..+.|||+++|++.+ +..+...+..++|+|+ +.+|+.. .|++|.+||+.+|++.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd-G~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC-CCEEEEE-ECCeEEEEECCCCceE
Confidence 89852 2 456799999998654 5544467899999994 5555555 5789999999999987
Q ss_pred EE-cccCCCce-----------------EEEEEcCCCcEEEEEe-CC---------------------------------
Q 012410 297 EV-SRTEFMTP-----------------SAFIFLYENQLFLTFR-NR--------------------------------- 324 (464)
Q Consensus 297 ~~-l~gh~~~v-----------------~sv~FspdgqllaS~s-D~--------------------------------- 324 (464)
+. ..++...+ .+++|||||+.||..+ |.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 74 33443322 3589999999999987 43
Q ss_pred ---eEEEEeC-C---Cc--eEEEec------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 325 ---TVAVWNF-R---GE--LVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 325 ---TIklWd~-~---Ge--~l~tl~------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|+|||+ + |+ ....+. +|..+ +.+++|||||+++|..... .+++.+|++||+.
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~wspdg~~~~~~~~r-------~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-----LCDVTWATQERISLQWLRR-------IQNYSVMDICDYD 293 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-----EEEEEEEETTEEEEEEEES-------STTEEEEEEEEEE
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-----EEEEEEeCCCeEEEEEeCC-------CCCEEEEEEEECC
Confidence 4888999 5 53 233443 37766 8899999999988776541 2346689999999
Q ss_pred CCe----EEEE--E--ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-Eee-CCCc-
Q 012410 390 TGK----CLAK--I--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGN-RHGL- 458 (464)
Q Consensus 390 tG~----cl~t--l--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs-~Dgt- 458 (464)
+|+ |... + .+|...+.. ....+++|||||+.|+ ..| .+|.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~-----------------------------~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGR-----------------------------FRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSS-----------------------------SSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred CCccccceeEEEEeeeccCCceEcc-----------------------------CcCCCceEcCCCCEEEEEEEcCCCce
Confidence 999 7643 2 445431000 0123678999999988 776 4554
Q ss_pred -EEecc
Q 012410 459 -VHVWS 463 (464)
Q Consensus 459 -VrlWd 463 (464)
|.+||
T Consensus 345 ~l~~~~ 350 (740)
T 4a5s_A 345 HICYFQ 350 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 44444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=202.50 Aligned_cols=239 Identities=10% Similarity=0.059 Sum_probs=162.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC-------Cc----
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-------SG---- 176 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-------~~---- 176 (464)
+.+++|+.. +. + +..-+..+++++++..+++++ .+ .++||+...-... ..
T Consensus 23 ~~vri~~~~-~~----~---~~~~~n~lavs~~~~~l~~~~----~d-------gv~v~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
T 2oit_A 23 KKVRIFDSP-EE----L---PKERSSLLAVSNKYGLVFAGG----AS-------GLQIFPTKNLLIQNKPGDDPNKIVDK 83 (434)
T ss_dssp CEEECSCCC-SS----C---CCSCCBCEEEETTTTEEEEEE----TT-------EEEEEEHHHHCCCCCTTCCTTCEEEC
T ss_pred eeEEecCCc-cc----c---CCCCccEEEEecCCCEEEEEC----CC-------EEEEEEchHhhhhcccccCccccccc
Confidence 457777532 11 1 334478899999999988833 33 2667664211100 00
Q ss_pred ccceeeccccCceEEEEeCCCCcEEE----EecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLT----YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~La----Sgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
.+..+..+-..+..|+|+ |||++|| +|+.|++|+|||+.++.. .. .....++ ..
T Consensus 84 ~~~~~~~~~~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~-----~~--------~~~~~~~--------~~ 141 (434)
T 2oit_A 84 VQGLLVPMKFPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSN-----EA--------KQQKRPF--------AY 141 (434)
T ss_dssp CCCEEECCSSCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHC-----TT--------CSSCCCS--------EE
T ss_pred CccccccCCCcccEEEEc-CCCCEEEEEEeccCCCceEEEEEcccccc-----CC--------cCCccee--------ee
Confidence 000111111234589997 8999999 999999999999875410 00 0000000 11
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.+.+|...+.+|+|+|..+..+++++.|++|+|||+++++++....+|...|.+++|+|+|++||+++ |++|++||.
T Consensus 142 ~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 142 HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence 2334445577899999996566777799999999999999988887888999999999999999999999 999999999
Q ss_pred CCceEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 332 RGELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~--~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+|+...++..|.....+ ..|.+++|+|++.++++++..+... .....+++||+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~----~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 222 TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL----ETSPDVVMALLPKK 279 (434)
T ss_dssp TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS----SSCCEEEEEECCCT
T ss_pred CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc----CCCCceEEEEeccC
Confidence 99988888877542210 1388999999999998877521000 00134999998754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=204.32 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=156.0
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
..++++ +++.+|+.++.|+ ++||+...... . ........++...... .++. +...+.+|+|
T Consensus 40 n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~--~-----------~~~~~~~~~~~~~~~~---~~~~-~~~~v~~l~~ 100 (434)
T 2oit_A 40 SLLAVS-NKYGLVFAGGASG-LQIFPTKNLLI--Q-----------NKPGDDPNKIVDKVQG---LLVP-MKFPIHHLAL 100 (434)
T ss_dssp BCEEEE-TTTTEEEEEETTE-EEEEEHHHHCC--C-----------CCTTCCTTCEEECCCC---EEEC-CSSCEEEEEE
T ss_pred cEEEEe-cCCCEEEEECCCE-EEEEEchHhhh--h-----------cccccCcccccccCcc---cccc-CCCcccEEEE
Confidence 379998 7888999999887 99998642110 0 0000101111111111 1222 2356899999
Q ss_pred EccCCCeEE----EEeCCCeEEEEECCCC--------c---EEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeC
Q 012410 269 IEQFNEKLL----VKQENENLQILDVRNA--------E---LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 269 ~~~~~~~ll----a~s~D~tIkIWDv~tg--------~---~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~ 331 (464)
+|+ +..|+ +++.|++|+|||+.++ + .++.+.+|...|.+++|+|+ +++||+++ |++|+|||+
T Consensus 101 spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 101 SCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp CTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred cCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 994 56666 4668999999999876 1 36788899999999999998 89999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+++++....+|... |.+++|+|||++||+|+. ||+|++||+. |+...++..|...-
T Consensus 180 ~~~~~~~~~~~~~~~-----v~~v~wspdg~~lasgs~-----------dg~v~iwd~~-~~~~~~~~~~~~~~------ 236 (434)
T 2oit_A 180 TETVKVCATLPSTVA-----VTSVCWSPKGKQLAVGKQ-----------NGTVVQYLPT-LQEKKVIPCPPFYE------ 236 (434)
T ss_dssp SSSEEEEEEECGGGC-----EEEEEECTTSSCEEEEET-----------TSCEEEECTT-CCEEEEECCCTTCC------
T ss_pred CCCcceeeccCCCCc-----eeEEEEcCCCCEEEEEcC-----------CCcEEEEccC-CcccccccCCcccC------
Confidence 58888888888877 899999999999999997 9999999987 88888887775300
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCCCc------EEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGL------VHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~Dgt------VrlWd~ 464 (464)
+++-..|.+++|+|++..+++ ++.||. +++|+.
T Consensus 237 ---------------------~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 237 ---------------------SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp ---------------------TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred ---------------------CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 000117899999999998854 344543 888873
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=178.89 Aligned_cols=240 Identities=9% Similarity=0.170 Sum_probs=163.2
Q ss_pred cceeehhcc---CCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cC
Q 012410 98 RDIVFALAH---SGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RG 171 (464)
Q Consensus 98 g~~l~~l~~---~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G 171 (464)
|+ |++.+. ++.+.+|++.+|+ .+..+ ..+...+..++|+|||+.|++++ . .+ .++.+|++. .|
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~--~-~~------~~v~v~~~~~~g 119 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSAN--Y-HK------GTAEVMKIAADG 119 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEE--T-TT------TEEEEEEECTTS
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEe--C-CC------CEEEEEEeCCCC
Confidence 66 454444 6899999987666 44443 23455688999999999998855 2 33 589999994 44
Q ss_pred CCCCcccceeec--------cccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeE
Q 012410 172 KPDSGFALFESE--------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPL 242 (464)
Q Consensus 172 ~~~~~~~l~~~~--------~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tI 242 (464)
.... ...+... ...++..++|+ |||++++++..+++|++||+. +|++.... .+
T Consensus 120 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~------~~---------- 181 (347)
T 3hfq_A 120 ALTL-TDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVSDAGQLSEQS------VL---------- 181 (347)
T ss_dssp CEEE-EEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEECTTSCEEEEE------EE----------
T ss_pred Ceee-cceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEECCCCcEEEee------eE----------
Confidence 4311 0111100 11346689997 899988888889999999987 55432110 00
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCC--CcEE--EEcccCC------CceEEEEE
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AELM--EVSRTEF------MTPSAFIF 311 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~t--g~~l--~~l~gh~------~~v~sv~F 311 (464)
....| .....++|+|+ +..+++. ..+++|++||+.. |++. ..+.... ..+.+++|
T Consensus 182 ---~~~~g----------~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 182 ---TMEAG----------FGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp ---ECCTT----------CCEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred ---EcCCC----------CCCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence 01111 23356788884 5556664 5889999999874 6642 2332222 45889999
Q ss_pred cCCCcEE-EEEe-CCeEEEEeCC--C--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 312 LYENQLF-LTFR-NRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 312 spdgqll-aS~s-D~TIklWd~~--G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+|||++| ++.. +++|++||+. | +.+.++..|... +..++|+|||++|++++. .+++|.+
T Consensus 248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~----------~~~~v~v 312 (347)
T 3hfq_A 248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-----PRDFDLDPTEAFVVVVNQ----------NTDNATL 312 (347)
T ss_dssp CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-----CCEEEECTTSSEEEEEET----------TTTEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-----cCeEEECCCCCEEEEEEc----------CCCcEEE
Confidence 9999966 6666 9999999984 5 456677777665 679999999999988875 2689999
Q ss_pred E--eCCCCeEEE
Q 012410 386 S--SILTGKCLA 395 (464)
Q Consensus 386 W--di~tG~cl~ 395 (464)
| |..+|+...
T Consensus 313 ~~~d~~tg~l~~ 324 (347)
T 3hfq_A 313 YARDLTSGKLSL 324 (347)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeCCCCeEEe
Confidence 9 767888654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-20 Score=181.42 Aligned_cols=257 Identities=8% Similarity=0.016 Sum_probs=174.5
Q ss_pred CeEEeee--cccccEe--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceee
Q 012410 108 GVCAAFS--RETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFES 182 (464)
Q Consensus 108 g~~~~~~--~~~g~~l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~ 182 (464)
+-+.+|+ ..+|+.- ..........+..++|+|||+.|++++ .+ ++.+|++. +|++.. +.+.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-------~v~~~~~~~~g~~~~---~~~~ 79 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTEIVH---EASH 79 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTEEEE---EEEE
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-------eEEEEEECCCCCEEE---eeEe
Confidence 3455544 3566542 222112334577899999999998854 22 78999997 777532 1111
Q ss_pred ccccCceEEEEeCCCCc--EEEEec-------------CCCcEEEEeCC-CCeEEEEec------CCCEeEEEEeCC---
Q 012410 183 ESLKWPGFVEFDDVNGK--VLTYSA-------------QDSIYKVFDLK-NYTMLYSIS------DKHVQEIKIRSS--- 237 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk--~LaSgs-------------~D~tiKlWdl~-tg~~l~tl~------~~~V~~Vafs~s--- 237 (464)
...+.|..++|+ |||+ +|++++ .|+++++|++. +|++...+. ...+.+++|+|+
T Consensus 80 ~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 80 PIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp ECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ecCCCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence 111345578997 8999 455554 69999999997 587754432 457999999985
Q ss_pred ------CceeEEEEEcC-CCcEEE--EEee--CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECC--CCcEE------E
Q 012410 238 ------SHVPLKILSIE-DGTVLK--VFYH--LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAELM------E 297 (464)
Q Consensus 238 ------~d~tIklWdi~-tG~~l~--tl~~--~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~--tg~~l------~ 297 (464)
.+..|++|++. +|++.. .+.. +....+.++|+|+ +..+++++ .+++|++|++. +|++. .
T Consensus 159 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 34689999998 898643 3431 1345689999994 55666666 57999999765 67753 2
Q ss_pred Eccc----CCC------ceEEEE-EcCCCcEEEEEe--CC-----eEEEEeC--CCceEE---EeccCCCCcCCCCeeEE
Q 012410 298 VSRT----EFM------TPSAFI-FLYENQLFLTFR--NR-----TVAVWNF--RGELVT---SFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 298 ~l~g----h~~------~v~sv~-FspdgqllaS~s--D~-----TIklWd~--~Ge~l~---tl~gH~~~~~~~~v~sv 354 (464)
++.. |.. .+.+++ |+|||+.|++++ +. +|++|++ +|++.. .+..+... ...+
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-----~~~~ 312 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSN 312 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-----cccc
Confidence 3322 222 588999 999999877665 33 8999998 487654 23334433 4578
Q ss_pred EECC---CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 355 YITS---DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 355 afSp---Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+|+| ||++|++++. .+++|+||++..+ -|..
T Consensus 313 a~sp~~~dg~~l~v~~~----------~~~~v~v~~~~~~-~l~~ 346 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDD----------QEGWLEIYRWKDE-FLHR 346 (365)
T ss_dssp CEEECTTCTTEEEEECS----------SSCEEEEEEEETT-EEEE
T ss_pred eecCCCcCCCEEEEEEc----------CCCeEEEEEEchh-hCce
Confidence 9999 8999999875 2599999998665 3443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=189.66 Aligned_cols=280 Identities=10% Similarity=0.006 Sum_probs=183.1
Q ss_pred cceEEEEeccceeehhcc----CCeEEeeecccccEeeEeecCCCceEE---------EEEEe--eCCCE-EEEEEeecC
Q 012410 89 TKVIEIVAARDIVFALAH----SGVCAAFSRETNRRICFLNVSPDEVIR---------SLFYN--KNNDS-LITVSVYAS 152 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~----~g~~~~~~~~~g~~l~~ln~~~~~~i~---------Sv~fs--~~g~~-l~svSa~~s 152 (464)
..+....+.|+-++.+.. ++...+|.+..+.....+.. +...++ +.+++ |||+. |+.++ +.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~-~~- 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH-FG- 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB-TT-
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEEE-CC-
Confidence 345556666665555544 67888998655655666644 434455 56555 99998 66522 11
Q ss_pred CCCcccceeeEEEEEec--c-CCCCCcccceeec---cccCceEEEEeCCCCcEEEEecCC----------CcEEEEeCC
Q 012410 153 DNFSSLKCRSTKIEYIR--R-GKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQD----------SIYKVFDLK 216 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~--~-G~~~~~~~l~~~~---~~~~~~~VaFs~pdGk~LaSgs~D----------~tiKlWdl~ 216 (464)
+ ..+.++++. . |+.. ++.... +...+..++|| |||+.|++++.| .+|++||+.
T Consensus 101 -~------~~l~~~~~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 101 -D------QRLYAFEPDAPGGAVPR---PLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp -T------CCEEEECTTSTTCCCCE---ECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred -C------CeEEEEcCCCCCCCCCE---eccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 2 334444433 2 4321 111100 11234589998 999999999988 689999999
Q ss_pred C------CeEEEEe-c-CCCEeEEEEeCC---------C-------ceeEEEEEcC-CC---cEEEEEeeCCcceeeEEE
Q 012410 217 N------YTMLYSI-S-DKHVQEIKIRSS---------S-------HVPLKILSIE-DG---TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 217 t------g~~l~tl-~-~~~V~~Vafs~s---------~-------d~tIklWdi~-tG---~~l~tl~~~~~~~~~V~F 268 (464)
+ ++..... . ...+.+++|||+ . ...|.+||++ +| ++.....++...+..++|
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 8 6654322 2 356788888884 1 1579999999 68 554444454567899999
Q ss_pred EccCCCeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCc--------eEEEEEcCCCcEEEEEeCCeEEEE--eCCCce
Q 012410 269 IEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGEL 335 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~--------v~sv~FspdgqllaS~sD~TIklW--d~~Ge~ 335 (464)
+|+ +. +++ +..|+ +|.+||+.+|++.++..++... +.+++|+|++++++++++++++|| |..+..
T Consensus 250 spd-g~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APD-GS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE 327 (662)
T ss_dssp CTT-SC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE
T ss_pred CCC-Ce-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc
Confidence 995 44 555 55777 6777787789988777665443 567999999999998877889999 665556
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEE--EEEecCCCccccccCCCC--eEEEEeCCCCeEEEEEccCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQDLI--ISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATN 401 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg~~L--aSgs~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gh~ 401 (464)
++.|..|... +.++. ++|++.+ ++++. +. +|.+||+.+|++......|.
T Consensus 328 ~~~l~~~~~~-----~~~~~-s~~~~~~~~~~~~~-----------~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 328 LVDAAGPWTE-----WAATL-TVSGTRAVGVAASP-----------RTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EEECCSSCCE-----EEEEE-EEETTEEEEEEEET-----------TEEEEEEEEETTTCCEEEEESCCC
T ss_pred EEEecCCCCe-----EEEEE-ecCCCEEEEEEcCC-----------CCCCEEEEEECCCCceEEeecCCc
Confidence 8899988665 56661 4555543 33332 43 56666888888765445554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=163.54 Aligned_cols=231 Identities=11% Similarity=0.211 Sum_probs=174.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee--eccccCceEEEEeCCCCcEEEEecC-
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
....+|+++|+|..+++ ...+ +.+.+|+.. |+....+.... ...+..|..++|++++|+++++...
T Consensus 30 ~~p~~v~~~~~g~l~v~----~~~~------~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVA----DTNN------HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp SCEEEEEECTTCCEEEE----EGGG------TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred CCCceEEECCCCCEEEE----ECCC------CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 56899999999987766 2333 578888854 55432211100 1134567799996589988887744
Q ss_pred CCcEEEEeCCCCeEEEEec---CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~ 273 (464)
++.|++|| .+|+.+.++. ...+..|+|.|+ .+..|.+||. +|+.+.++.. .......|+|.++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~-- 174 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK-- 174 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS--
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCC--
Confidence 88999999 7888888775 246899999874 4568999996 5888888752 2345689999884
Q ss_pred CeEEEE-eCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CC-eEEEEeCCCceEEEeccCCCCcCC
Q 012410 274 EKLLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPD 348 (464)
Q Consensus 274 ~~lla~-s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~-TIklWd~~Ge~l~tl~gH~~~~~~ 348 (464)
+.++++ +.++.|++||. +|+.+..+.. +...|.+++|+|+|+++++.. ++ +|++||.+|+.+.++..|....
T Consensus 175 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-- 251 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA-- 251 (286)
T ss_dssp SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS--
T ss_pred CCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCC--
Confidence 566665 57999999996 6777776654 357899999999999999998 75 9999999999999998775431
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
...+++|+|||+++++ +. |++|++|++...
T Consensus 252 -~~~~i~~~~~g~l~vs-~~-----------~~~v~v~~~~~~ 281 (286)
T 1q7f_A 252 -QCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 281 (286)
T ss_dssp -CEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred -cceeEEECCCCcEEEE-CC-----------CCeEEEEEcccc
Confidence 1578999999999888 44 899999997543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-18 Score=164.05 Aligned_cols=255 Identities=11% Similarity=0.103 Sum_probs=177.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC-
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~- 208 (464)
..+.++.+ ||+.++.+....... .+-....+.+|++.+|+.. ++ ..+..++|| |||+.||+.+.+.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~---~l------~~~~~~~~S-pDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNARR---FI------ENATMPRIS-PDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCEE---EE------ESCEEEEEC-TTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCceE---Ec------ccCCCeEEC-CCCCEEEEEEeccC
Confidence 44677777 899888754322110 1111267888898887642 22 234479998 9999999987653
Q ss_pred ----cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----------------------------------ceeEEEEEcC
Q 012410 209 ----IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS-----------------------------------HVPLKILSIE 248 (464)
Q Consensus 209 ----tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~-----------------------------------d~tIklWdi~ 248 (464)
.|.+||+.+|+...... .. +..++|+|++ ...|.+||++
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred CCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 37788999988765433 33 8899998741 2569999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------C-eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------E-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~-tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~ 321 (464)
+|++++.+.. . .+..++|+|+ +.++++..+ . ..+||.+.+|++..... + ..+.++ ||||+.|+..
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spd--g~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRD--KIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETT--EEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEEE--EECSSCEEEE
T ss_pred CCeEEeeecC-C-CcccccCCCC--eEEEEEecccccccccccccEEEeCCCceEEecc-C-cceeeE--CCCCCEEEEE
Confidence 9998666665 2 6789999995 443445443 2 44555554776654433 3 445544 9999998877
Q ss_pred e-CC--------eEEEEeCCCceEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 322 R-NR--------TVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 322 s-D~--------TIklWd~~Ge~l~tl~gH~~~~~~~~v~s-vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+ +. .|.+|| +|++...+.+|... +.+ ++|+ || ++++++. |++++|| +.+|
T Consensus 233 ~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~-----~~~~~~~s-dg-~~~~~~~-----------~~~~~l~-~~~g 292 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG-----VGQAKIKD-GK-VYFTLFE-----------EGSVNLY-IWDG 292 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE-----EEEEEEET-TE-EEEEEEE-----------TTEEEEE-EESS
T ss_pred EccccCCccccceEEEEC-CCceEeccccCCcc-----cCCccEEc-Cc-EEEEEec-----------CCcEEEE-EcCC
Confidence 7 43 688888 88877666666655 676 9999 99 9998886 8999999 8888
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE-Eecc
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV-HVWS 463 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV-rlWd 463 (464)
++...+ .+.. .|.+++|+| ..+++++.+++. +||.
T Consensus 293 ~~~~~~-~~~~----------------------------------~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 293 EIKPIA-KGRH----------------------------------WIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp SEEEEE-CSSS----------------------------------EEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred ceEEEe-cCCC----------------------------------eEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 875544 3343 789999999 788888888775 7774
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=170.52 Aligned_cols=234 Identities=12% Similarity=0.127 Sum_probs=175.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCccc-----------------ceeeEEEEEeccCCCCCcccceeeccccCceEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSL-----------------KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L-----------------~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~Va 192 (464)
..+.+|+++|+|+.+++.+ .+.-+.. .-.++.+||..+|++.. .+....+..|..|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia 97 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHR---GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLS 97 (329)
T ss_dssp SCEEEEEECTTCCEEEEEC---TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEE
T ss_pred CCceEEEECCCCCEEEEeC---CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEE
Confidence 3489999999999887733 2211100 00368899988888742 22223456788999
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec-----------CCCEeEEEEeC-C---------CceeEEEEEcCCC
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----------DKHVQEIKIRS-S---------SHVPLKILSIEDG 250 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~-----------~~~V~~Vafs~-s---------~d~tIklWdi~tG 250 (464)
|+ |+|+++++.+.+++|++||..... .+.++. -.....|+|+| + .+..|++|| .+|
T Consensus 98 ~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 98 ID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp EC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred EC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 97 899999999999999999975432 566653 12588999987 2 367899999 679
Q ss_pred cEEEEEeeC----------CcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcC----
Q 012410 251 TVLKVFYHL----------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY---- 313 (464)
Q Consensus 251 ~~l~tl~~~----------~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fsp---- 313 (464)
+.+.++... ......|+|.|+ ++.|+++ ..++.|++||..+|+++.++. ++...+.+++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence 999988521 123588999884 4566665 589999999999999999874 4566899999999
Q ss_pred --CCcEEEEEe-CCeEEEEeC-CCceEEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 314 --ENQLFLTFR-NRTVAVWNF-RGELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 314 --dgqllaS~s-D~TIklWd~-~Ge~l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+|+++++.+ +.+|++||. +|+++.++. +|..+ .+.|+|+|||.++++.+. +++|++|
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-----p~~ia~~~dG~lyvad~~-----------~~~I~~~ 318 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM-----PHDIVASEDGTVYIGDAH-----------TNTVWKF 318 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-----EEEEEECTTSEEEEEESS-----------SCCEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-----eeEEEECCCCCEEEEECC-----------CCEEEEE
Confidence 444444444 569999998 799999984 66665 789999999998888765 8999999
Q ss_pred eC
Q 012410 387 SI 388 (464)
Q Consensus 387 di 388 (464)
++
T Consensus 319 ~~ 320 (329)
T 3fvz_A 319 TL 320 (329)
T ss_dssp EE
T ss_pred eC
Confidence 96
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=175.51 Aligned_cols=232 Identities=11% Similarity=0.037 Sum_probs=156.8
Q ss_pred EEEeCCCCcEEEEecC-CCc--EEEEeCCCCeEEEEecC--CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe
Q 012410 191 VEFDDVNGKVLTYSAQ-DSI--YKVFDLKNYTMLYSISD--KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~-D~t--iKlWdl~tg~~l~tl~~--~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~ 257 (464)
++|| |||+.||+++. |++ |.+||+.+|+....... ..+..++|||+ .+..|.+||+++|+....+.
T Consensus 41 ~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 7897 99999999988 664 88889999998765442 33446788885 35689999999999888776
Q ss_pred eCCcceeeEEEEccCCCeEEEE-----------------------eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-----------------------QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY- 313 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-----------------------s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp- 313 (464)
.+...+....|....+++++++ +.+..|.+||+.+|+..... .+...+..++|||
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPY 198 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCC
Confidence 5444444444421122445542 24578999999999876554 4456788999999
Q ss_pred CCcEEEEEe-CC------eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 314 ENQLFLTFR-NR------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 314 dgqllaS~s-D~------TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
||+.||..+ +. .|.+||..|..++.+..+.... .+..++|||||+.|+..+... ...+.+|.+|
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~spdg~~l~~~~~~~------~~~~~~l~~~ 269 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE---SCTHEFWVPDGSALVYVSYLK------GSPDRFIYSA 269 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE---EEEEEEECTTSSCEEEEEEET------TCCCEEEEEE
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc---ccccceECCCCCEEEEEecCC------CCCcceEEEE
Confidence 999998877 32 6777777777677777665311 167889999999887765410 1112359999
Q ss_pred eCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe---------eC
Q 012410 387 SILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---------NR 455 (464)
Q Consensus 387 di~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg---------s~ 455 (464)
|+.+|+. +..+.++.. .. + ....++|||||+.||.. ..
T Consensus 270 d~~~g~~~~l~~~~~~~~----~~-------------------~--------~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSH----LM-------------------S--------NYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp CTTTCCEEEEEEECCEEE----EE-------------------E--------CTTSSEEEEEECCC------------CC
T ss_pred ecCCCceEEEEcCCCcee----ee-------------------e--------cCCCCeEccCCCcceeEeeeccccccCC
Confidence 9999984 444444211 00 0 01113789999998854 55
Q ss_pred CCcEEeccC
Q 012410 456 HGLVHVWSN 464 (464)
Q Consensus 456 DgtVrlWd~ 464 (464)
+..|.+||.
T Consensus 319 ~~~i~~~d~ 327 (388)
T 3pe7_A 319 DPFLYVFNM 327 (388)
T ss_dssp CCEEEEEET
T ss_pred CCEEEEEec
Confidence 678999973
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=184.04 Aligned_cols=276 Identities=8% Similarity=-0.016 Sum_probs=180.8
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc----cCce-EEEEe-CCCCcE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL----KWPG-FVEFD-DVNGKV 200 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~----~~~~-~VaFs-~pdGk~ 200 (464)
+|...+.+++|++++ ++-++.-...+ ....||....|.....+........ .+-+ .++|+ +|||+.
T Consensus 21 ~~~~~~~~~~~s~~~--~~~~~~~~~~~------~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 21 SRSGRPACVGAVGDE--VWWVAPRPAEA------GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HTCSCCEEEEEETTE--EEEEEEETTTT------TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred hcCCccceeEEcCCe--EEEEecCcccC------CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCe
Confidence 467789999999754 44444322444 5788888643332111111110000 0001 35565 389998
Q ss_pred -EEEecC-CCcEEEEeCC--C-CeEEEEecC-------CCEeEEEEeCC--------Cc----------eeEEEEEcCC-
Q 012410 201 -LTYSAQ-DSIYKVFDLK--N-YTMLYSISD-------KHVQEIKIRSS--------SH----------VPLKILSIED- 249 (464)
Q Consensus 201 -LaSgs~-D~tiKlWdl~--t-g~~l~tl~~-------~~V~~Vafs~s--------~d----------~tIklWdi~t- 249 (464)
||+++. +..|.+||+. + ++ ...+.. ..+.+++|||+ .+ .+|.+||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 887665 4455555654 2 43 444432 35789999985 23 5799999998
Q ss_pred -----CcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCC--------CeEEEEECC-CC---cEEEEcccCCCceEEEEE
Q 012410 250 -----GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVR-NA---ELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 250 -----G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D--------~tIkIWDv~-tg---~~l~~l~gh~~~v~sv~F 311 (464)
|++. .+. .+...+..++|+| ++.+|+..+.| .+|.+||+. +| ++.....+|...+.+++|
T Consensus 172 ~~~~~~~~~-~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 172 AAADRSAVR-ELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTCGGGSE-ESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred ccccCCcee-EEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 6654 443 3335678899999 46667766644 489999999 68 666666777788999999
Q ss_pred cCCCcEEEEEe-CC--eEEEEeC-CCceEEEeccCCC-----CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 312 LYENQLFLTFR-NR--TVAVWNF-RGELVTSFEDHLL-----WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 312 spdgqllaS~s-D~--TIklWd~-~Ge~l~tl~gH~~-----~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
||||+++++++ |+ .|.+||. +|++.+.+.+|.. |.++ +.+++|+|||+++++++ . ++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~--~~~~~~~~~~~~~~~~~-----------~-~~ 315 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG--MRWFAPLANGLIAVVHG-----------K-GA 315 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT--CCSEEECTTSCEEEEEB-----------S-SS
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc--CceEeEeCCCEEEEEEE-----------c-Cc
Confidence 99999888888 88 5566666 5776655544432 3222 45799999999999875 3 78
Q ss_pred EEEE--eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEE-EEcCCCCEEEEeeCCCcE
Q 012410 383 INVS--SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 383 IklW--di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl-afspDg~~LaSgs~DgtV 459 (464)
++|| |+.+|+ +++|..|.. .|.++ ++++++-.+++++.+...
T Consensus 316 ~~l~~~d~~~~~-~~~l~~~~~----------------------------------~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAGPWT----------------------------------EWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CEEEEEETTTTE-EEECCSSCC----------------------------------EEEEEEEEETTEEEEEEEETTEEE
T ss_pred cEEEEEECCCCc-EEEecCCCC----------------------------------eEEEEEecCCCEEEEEEcCCCCCC
Confidence 8999 765665 788887764 66666 565555556677777766
Q ss_pred Eec
Q 012410 460 HVW 462 (464)
Q Consensus 460 rlW 462 (464)
.||
T Consensus 361 ~i~ 363 (662)
T 3azo_A 361 EVV 363 (662)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=172.43 Aligned_cols=256 Identities=14% Similarity=0.103 Sum_probs=180.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCCcEEEEeCCCCeEEEEec-----
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS----- 225 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~tiKlWdl~tg~~l~tl~----- 225 (464)
.++.+||..+|+.....+. . ..| .++|| |||+.|..+. .|++|.+||+.+++.+.++.
T Consensus 31 ~~v~v~D~~t~~~~~~i~~---g--~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPT---A--FNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTTCCEEEEEEC---C--EEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCCCeEEEEecC---C--CCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 6899999999987543221 1 235 89997 8999998876 36789999999999988775
Q ss_pred ---CCCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 226 ---DKHVQEIKIRSS---------S-HVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ---~~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
......++|+|+ . +.+|.+||+++++.+.+ +.. .....+.+.|..+..+++.+.|+++.+|++.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 135678999884 2 58999999999999988 653 2234466767433456667899999999987
Q ss_pred C-CcEEE------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc--eEEEec------cCCCCcCCCCeeEE
Q 012410 292 N-AELME------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFE------DHLLWHPDCNTNNI 354 (464)
Q Consensus 292 t-g~~l~------~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge--~l~tl~------gH~~~~~~~~v~sv 354 (464)
. |+... ++..+.. +..+.++|+|..++..+ +++|.+||+. ++ .+.++. .+..|.+.. ...+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG-YNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC-SSCE
T ss_pred CCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC-eeEE
Confidence 6 77662 2222322 23445689998888888 9999999994 33 223332 122232210 1238
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
+|+|||+.|..++.....+-.....+++|.+||+.|+++++++..+.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--------------------------------- 306 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--------------------------------- 306 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---------------------------------
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---------------------------------
Confidence 99999888876542000000000124689999999999999997763
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+++++|+|||+.||+++. ++|.|||.
T Consensus 307 ---p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 307 ---ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ---CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ---eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 467999999999999997 99999983
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=155.18 Aligned_cols=247 Identities=12% Similarity=0.119 Sum_probs=168.7
Q ss_pred CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecccc
Q 012410 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~ 186 (464)
.+.+.+|+..+|+.. .+ ..+.++.|||||+.|+.++.....+ ...+.++++.+|+.. ++.... .
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~~-----~~~l~~~~~~~g~~~---~l~~~~--~ 105 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRISPDGKKIAFMRANEEKK-----VSEIWVADLETLSSK---KILEAK--N 105 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEECTTSSEEEEEEEETTTT-----EEEEEEEETTTTEEE---EEEEES--E
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEECCCCCEEEEEEeccCCC-----cceEEEEECCCCceE---EEEcCC--C
Confidence 557788887777643 33 3478899999999999977443111 145777787777653 233222 2
Q ss_pred CceEEEEeCCCCcEEEEecCC---------------------------CcEEEEeCCCCeEEEEecCCCEeEEEEeCC--
Q 012410 187 WPGFVEFDDVNGKVLTYSAQD---------------------------SIYKVFDLKNYTMLYSISDKHVQEIKIRSS-- 237 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D---------------------------~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s-- 237 (464)
+..++|+ |||+.|++++.+ ..|.+||+.+|+++..+....+..++|+|+
T Consensus 106 -~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg~ 183 (347)
T 2gop_A 106 -IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKI 183 (347)
T ss_dssp -EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTEE
T ss_pred -ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCeE
Confidence 5689997 899999988743 579999999998744332116677777764
Q ss_pred -----Cc------e-eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC--------CeEEEEECCCCcEEE
Q 012410 238 -----SH------V-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELME 297 (464)
Q Consensus 238 -----~d------~-tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D--------~tIkIWDv~tg~~l~ 297 (464)
.+ . ..+||.+.+|++. .+..+ ..+..+ +| ++.+|+..+.+ ..|.+|| +|++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred EEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 11 2 3455555566654 44432 334444 66 56677776533 4688888 888887
Q ss_pred EcccCCCceEE-EEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 298 VSRTEFMTPSA-FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 298 ~l~gh~~~v~s-v~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
...+|...+.. ++|+ || ++++++ |++++|| + +|++...+. +... |.+++|+| .++++++.
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~-----v~~~~~s~--~~~~~~~~------ 319 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW-----IMGFDVDE--IVVYLKET------ 319 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE-----EEEEEESS--SEEEEEEC------
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe-----EEeeeeeC--cEEEEEcC------
Confidence 77777778886 8999 99 888888 9999999 8 688755544 4444 88999999 77777764
Q ss_pred cccCCCCeE-EEEeCCCCeEEEEEccCCC
Q 012410 375 WMEGSAGSI-NVSSILTGKCLAKINATNC 402 (464)
Q Consensus 375 ~~~s~DgtI-klWdi~tG~cl~tl~gh~~ 402 (464)
+++. +||.+. |+ +..|..|+.
T Consensus 320 -----~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 320 -----ATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp -----SSSCCEEEEES-SS-EEECCCTTS
T ss_pred -----CCChHHheEeC-Cc-EEEeccccH
Confidence 4544 788776 76 556777764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-17 Score=177.27 Aligned_cols=226 Identities=10% Similarity=0.034 Sum_probs=165.0
Q ss_pred ceEEEEeCCCCcEEEEecCCC-----cEEEEeCCCCeEEE-EecCCCEeEEEEeCC--------Ccee------------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKHVQEIKIRSS--------SHVP------------ 241 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~-----tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s--------~d~t------------ 241 (464)
...++|| |||+.||+++.++ +|+|||+.+|+.+. ++....+.+++|+|+ .+.+
T Consensus 127 ~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 127 LRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 3479998 9999999876654 99999999999876 343334677888874 2233
Q ss_pred ----EEEEEcCCCcE--EEEEee--CCcceeeEEEEccCCCeEEEEeC-----CCeEEEEECCC------Cc-EEEEccc
Q 012410 242 ----LKILSIEDGTV--LKVFYH--LLHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRN------AE-LMEVSRT 301 (464)
Q Consensus 242 ----IklWdi~tG~~--l~tl~~--~~~~~~~V~F~~~~~~~lla~s~-----D~tIkIWDv~t------g~-~l~~l~g 301 (464)
|++|++.+|+. ...+.. +...+..++|+| ++.+|+..+. +..|.+||+.+ ++ .++.+..
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 99999999872 222332 223457899998 4667776543 67899999987 64 4566666
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CC---eEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 302 EFMTPSAFIFLYENQLFLTFR--NR---TVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 302 h~~~v~sv~FspdgqllaS~s--D~---TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
|...+.. .|+|||+.|+..+ ++ .|.+||+ +++ ..+++..|.... .+.+++|+|++.+++++..
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~lv~~~~~----- 355 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD---VLEWVACVRSNFLVLCYLH----- 355 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---EEEEEEEETTTEEEEEEEE-----
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC---eEEEEEEEcCCEEEEEEEE-----
Confidence 7666665 4889988776655 32 6999999 454 356676675531 2788999999999999886
Q ss_pred ccccCCCCe--EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 374 QWMEGSAGS--INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 374 ~~~~s~Dgt--IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
|+. |.+||+.+|++++.|..+.. .|.+++++||++.|+
T Consensus 356 ------~g~~~l~~~~~~~g~~~~~l~~~~~----------------------------------~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 356 ------DVKNTLQLHDLATGALLKIFPLEVG----------------------------------SVVGYSGQKKDTEIF 395 (710)
T ss_dssp ------TTEEEEEEEETTTCCEEEEECCCSS----------------------------------EEEEEECCTTCSEEE
T ss_pred ------CCEEEEEEEECCCCCEEEecCCCCc----------------------------------eEEEEecCCCCCEEE
Confidence 764 66678779999999987754 788999999998877
Q ss_pred ----EeeCCCcEEeccC
Q 012410 452 ----TGNRHGLVHVWSN 464 (464)
Q Consensus 452 ----Sgs~DgtVrlWd~ 464 (464)
|....++|.+||.
T Consensus 396 ~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEECSSCCCEEEEEET
T ss_pred EEEeCCCCCCEEEEEEC
Confidence 3335678888873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-17 Score=154.18 Aligned_cols=218 Identities=12% Similarity=0.117 Sum_probs=163.1
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t 255 (464)
..++..++|+ |+|+ +++++..++.|.+||..++...+......+..|+|+|+ .+..|.+||.++|++...
T Consensus 27 ~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 27 FTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred CccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 4566799998 8998 88889999999999999882222334567999999874 346899999999987654
Q ss_pred EeeC----CcceeeEEEEccCCCeEEEE-----e-------------CCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 256 FYHL----LHRNKKVDFIEQFNEKLLVK-----Q-------------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 256 l~~~----~~~~~~V~F~~~~~~~lla~-----s-------------~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
+... ......++|.|+ +.++++ . ..+.|..+|.. |+. ..+..+...+..++|+|
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp ECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECT
T ss_pred eeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECC
Confidence 4321 123467999884 566663 2 12355555544 554 44456677899999999
Q ss_pred CCcEEEEEe-CCeEEEEeC--CCce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 314 ENQLFLTFR-NRTVAVWNF--RGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~--~Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||++|++.+ +++|.+||+ +|++ ...+..+... ...++++|||+++++. ++.|.+||
T Consensus 182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~-------------~~~v~~~~ 243 (296)
T 3e5z_A 182 SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK-----TDGLRVDAGGLIWASA-------------GDGVHVLT 243 (296)
T ss_dssp TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC-----CCSEEEBTTSCEEEEE-------------TTEEEEEC
T ss_pred CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC-----CCeEEECCCCCEEEEc-------------CCeEEEEC
Confidence 999997777 899999998 4777 4566333332 4579999999988875 57899999
Q ss_pred CCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEeeCCCcEEe
Q 012410 388 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 388 i~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-spDg~~LaSgs~DgtVrl 461 (464)
. .|+++.++..+. .+.+++| +||++.|+.++.++.+++
T Consensus 244 ~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 244 P-DGDELGRVLTPQ-----------------------------------TTSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-TSCEEEEEECSS-----------------------------------CCCEEEEESTTSCEEEEEETTEEEEE
T ss_pred C-CCCEEEEEECCC-----------------------------------CceeEEEECCCCCEEEEEcCCeEEEE
Confidence 7 599999997765 3678999 699999999999987765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=152.15 Aligned_cols=261 Identities=9% Similarity=0.046 Sum_probs=173.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+..++.+..++.++.| .++.+..+.. +...+.+++|+|+|+.+++ +..+ ..+.+|+..+|++..
T Consensus 17 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~----~~~~------~~i~~~d~~~~~~~~-- 80 (333)
T 2dg1_A 17 SNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLL----DVFE------GNIFKINPETKEIKR-- 80 (333)
T ss_dssp GGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEE----ETTT------CEEEEECTTTCCEEE--
T ss_pred ccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEE----ECCC------CEEEEEeCCCCcEEE--
Confidence 4445555677788888 4666777744 5556899999999997666 3444 688999988877531
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l 253 (464)
+.......|..++|+ |||++++++..+ +.|.+||.++++....+...
T Consensus 81 --~~~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------- 131 (333)
T 2dg1_A 81 --PFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------------------- 131 (333)
T ss_dssp --EEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--------------------------
T ss_pred --EeeCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--------------------------
Confidence 111122456789997 899998887766 67888888776654222100
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeC-------CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CC
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NR 324 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~-------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~ 324 (464)
.....+..++|.|+ +.++++.. .+.|..+|..+++..... .+...+..++|+|||+ ++++.+ ++
T Consensus 132 ----~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 132 ----STAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp ----SSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ----ccCCcccceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCC
Confidence 00023345556553 44555432 245666666666655443 3345688999999998 556666 89
Q ss_pred eEEEEeC--CCceEEEe--------ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 325 TVAVWNF--RGELVTSF--------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 325 TIklWd~--~Ge~l~tl--------~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+|.+||. +|+.+..+ .+| .. +..++++|||+++++... ++.|.+||. +|+.+
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~-----~~~i~~d~~G~l~v~~~~-----------~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIPYYFTGH-EG-----PDSCCIDSDDNLYVAMYG-----------QGRVLVFNK-RGYPI 266 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSS-SE-----EEEEEEBTTCCEEEEEET-----------TTEEEEECT-TSCEE
T ss_pred eEEEEEecCCCcCcccccceEEEecCCC-CC-----CCceEECCCCCEEEEEcC-----------CCEEEEECC-CCCEE
Confidence 9999998 46655432 233 12 578999999999988764 789999997 78888
Q ss_pred EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 395 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 395 ~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.++..+.. . .| .+..+.+++|+|||+.|+.++.+
T Consensus 267 ~~~~~~~~-~-------~g--------------------~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGR-D-------EG--------------------HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTG-G-------GT--------------------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCC-c-------cc--------------------cccCcceEEECCCCCEEEEEeCc
Confidence 88854431 0 00 01147889999999888866655
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=176.43 Aligned_cols=243 Identities=10% Similarity=0.033 Sum_probs=175.2
Q ss_pred CCCceEEEEEEeeCCCEEEEEEee-cCCCCcccceeeEEEEEeccCCCC-CcccceeeccccCc--eEEEEeCCCCcEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPD-SGFALFESESLKWP--GFVEFDDVNGKVLT 202 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~-~sddfs~L~~~ti~l~~i~~G~~~-~~~~l~~~~~~~~~--~~VaFs~pdGk~La 202 (464)
.|...+.++.|||||+.||.++.. ++++ .++++||+.+|+.. .. .+.+. ..++|+ |||+.|+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~------~~i~v~dl~tg~~~~~~-------~~~~~~~~~~~ws-pDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADE------AVLHVIDVDSGEWSKVD-------VIEGGKYATPKWT-PDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSC------CEEEEEETTTCCBCSSC-------CBSCCTTCCCEEC-TTSSEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCce------EEEEEEECCCCCCcCCc-------ccCcccccceEEe-cCCCEEE
Confidence 355579999999999999865543 3445 79999999999864 11 11122 479998 8999999
Q ss_pred EecCCCc-------------EEEEeCCCCe----EEEEecC--CCEeEEEEeCCC------------ceeEEEEEcCCCc
Q 012410 203 YSAQDSI-------------YKVFDLKNYT----MLYSISD--KHVQEIKIRSSS------------HVPLKILSIEDGT 251 (464)
Q Consensus 203 Sgs~D~t-------------iKlWdl~tg~----~l~tl~~--~~V~~Vafs~s~------------d~tIklWdi~tG~ 251 (464)
+++.|.+ |++|++.+++ +++...+ ..+.+++|||++ ...|.+|+..+|+
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 9999887 9999999887 5555543 478899999841 2367777777776
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCcE---EEEcccC-CCceEEEEEcCCCcEEEEEe-
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTE-FMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~~---l~~l~gh-~~~v~sv~FspdgqllaS~s- 322 (464)
. +.+..+...+..+.+ + +++ +++.+ .++.|.+||+.+++. ..++.++ ...+.+++|+ +++++++.+
T Consensus 264 ~-~~l~~~~~~~~~~~~-~-~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHA-W-KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEEEE-E-TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEEEe-c-CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 4 444433344556666 4 344 66654 368999999988863 4444444 4567888998 889999999
Q ss_pred CCeEEEEeC--CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~--~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|++.+||.+ +|++++.+..+ ... |..++++|||+.|+-...+ ....++|.+||+.+|+ +..|+.
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~~l~~~~ss-------~~~P~~v~~~d~~~g~-~~~l~~ 405 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQLPGVGA-----ASNLMGLEDLDDAYYVFTS-------FTTPRQIYKTSVSTGK-SELWAK 405 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCCSSSSE-----ECCCBSCTTCSEEEEEEEE-------TTEEEEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEEEeCCCCeeEEecCCCCeE-----EEEeecCCCCCEEEEEEcC-------CCCCCEEEEEECCCCc-EEEEec
Confidence 999999976 58888888766 434 6778899999877733221 1236899999999988 456666
Q ss_pred CC
Q 012410 400 TN 401 (464)
Q Consensus 400 h~ 401 (464)
+.
T Consensus 406 ~~ 407 (695)
T 2bkl_A 406 VD 407 (695)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=163.93 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=152.4
Q ss_pred ceEEEEeCCCCcEEEEecCC---CcEEEEeCCCCeEEEEec-CCCEe-EEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQ-EIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D---~tiKlWdl~tg~~l~tl~-~~~V~-~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
+..++|| |||+.|++.+.+ ..|.+||+.+++...... ...+. .++|||+ .+..|.+||+.+|+...
T Consensus 38 ~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 4478897 999999887553 478899999998654332 22222 3667774 33479999999999877
Q ss_pred EEeeCCcceee---E----------------EEEccCCCeEEEE-----eCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 255 VFYHLLHRNKK---V----------------DFIEQFNEKLLVK-----QENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 255 tl~~~~~~~~~---V----------------~F~~~~~~~lla~-----s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
.+..+...... + +|+| ++..++.. ..+..|.+||+.+|++.... .+...+..++
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 66633232211 2 2334 23333322 45678999999999987665 4556788999
Q ss_pred EcC-CCcEEEEEe-C------CeEEEEeCCCceEEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 311 FLY-ENQLFLTFR-N------RTVAVWNFRGELVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 311 Fsp-dgqllaS~s-D------~TIklWd~~Ge~l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|+| ||+.|+..+ + ..|.+||+.|..++.+..+. .+ .+..++|||||+.|+..+... ...++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~------~~~~~ 264 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGE----SCTHEFWIPDGSAMAYVSYFK------GQTDR 264 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTE----EEEEEEECTTSSCEEEEEEET------TTCCE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCc----cccceEECCCCCEEEEEecCC------CCccc
Confidence 999 898777665 3 46888898655555555543 22 267899999999888776410 01135
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEee------
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGN------ 454 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs------ 454 (464)
+|.+||+.+|+..... ... ... ++|+| ||+.|++++
T Consensus 265 ~l~~~d~~~g~~~~l~-~~~-----------------------------------~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 265 VIYKANPETLENEEVM-VMP-----------------------------------PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp EEEEECTTTCCEEEEE-ECC-----------------------------------SEE-EEEECSSSSEEEEEECCC---
T ss_pred eEEEEECCCCCeEEee-eCC-----------------------------------CCC-CCccCCCCceEEEecCCccee
Confidence 6999999999864432 111 222 89999 999999865
Q ss_pred ----------CCCcEEecc
Q 012410 455 ----------RHGLVHVWS 463 (464)
Q Consensus 455 ----------~DgtVrlWd 463 (464)
.+..|.+||
T Consensus 308 ~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLN 326 (396)
T ss_dssp -------CCCCCCEEEEEE
T ss_pred eccccccccCCCCcEEEEe
Confidence 347899987
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-16 Score=169.12 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=178.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.+...+.++.|||||+.||.++..++.+ -.++++||+.+|+.... ... . .....++|+ |||+.|++++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~-----~~~i~v~d~~tg~~~~~--~~~-~--~~~~~~~ws-pDg~~l~~~~~ 190 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSD-----WVTIKFMKVDGAKELPD--VLE-R--VKFSCMAWT-HDGKGMFYNAY 190 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCS-----CEEEEEEETTTTEEEEE--EEE-E--ECSCCEEEC-TTSSEEEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCc-----eEEEEEEECCCCCCCcc--ccc-C--cccceEEEE-eCCCEEEEEEE
Confidence 3445689999999999999866443221 14899999999986421 111 1 113479998 89999999999
Q ss_pred CCc----------------EEEEeCCCCe----EEEEec--CCCEeEEEEeCCC-------------ceeEEEEEcCC--
Q 012410 207 DSI----------------YKVFDLKNYT----MLYSIS--DKHVQEIKIRSSS-------------HVPLKILSIED-- 249 (464)
Q Consensus 207 D~t----------------iKlWdl~tg~----~l~tl~--~~~V~~Vafs~s~-------------d~tIklWdi~t-- 249 (464)
|.+ |++|++.+++ +++... ...+.+++|||++ +..|.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 887 9999999887 444443 2357788898841 56799999987
Q ss_pred ----Cc-EEEEEeeCCcceeeEEEEccCCCeEEEEeC----CCeEEEEECCCCc--EEEEcccCCC--ceEEEEEcCCCc
Q 012410 250 ----GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAE--LMEVSRTEFM--TPSAFIFLYENQ 316 (464)
Q Consensus 250 ----G~-~l~tl~~~~~~~~~V~F~~~~~~~lla~s~----D~tIkIWDv~tg~--~l~~l~gh~~--~v~sv~Fspdgq 316 (464)
|+ .++.+..+...+.. .|++ ++++++..+. +..|.+||+.+++ ..+.+..|.. .+.+++|++++.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cccCCccceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 64 45666643333433 4667 4677777553 3479999999875 2344444543 678899999999
Q ss_pred EEEEEe-CCe--EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 317 LFLTFR-NRT--VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 317 llaS~s-D~T--IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
++++.+ |++ |.+||+ +|++++.+..|... |.+++++||++.|+-... +....++|.+||+.+|+
T Consensus 349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~d~~~l~~~~s-------s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQKKDTEIFYQFT-------SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCTTCSEEEEEEE-------CSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCCCCCEEEEEEe-------CCCCCCEEEEEECCCCc
Confidence 999999 885 556687 79999999988554 788999999986653322 12346899999999999
Q ss_pred E-EEEEccCC
Q 012410 393 C-LAKINATN 401 (464)
Q Consensus 393 c-l~tl~gh~ 401 (464)
+ +..++.+.
T Consensus 417 ~~~~~l~~~~ 426 (710)
T 2xdw_A 417 LEPRVFREVT 426 (710)
T ss_dssp CCCEEEEECC
T ss_pred cceEEeeecc
Confidence 6 66666543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=152.84 Aligned_cols=248 Identities=8% Similarity=0.027 Sum_probs=183.0
Q ss_pred eeEEEEEeccCCCCCcccce-eeccc-cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC
Q 012410 161 RSTKIEYIRRGKPDSGFALF-ESESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~-~~~~~-~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s 237 (464)
.++.++|..+|+.......- ....+ ..|..++|+ ++++.++...+++|.+||.++++.+.++. ......|+|+++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD 94 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC
Confidence 68888898888875432100 00112 224478885 67788888888999999999999999886 467899999663
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCC-----cceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccC
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLL-----HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~-----~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh 302 (464)
.+..|.+||.++++++.++.-.. .....+++ +++++.++. .+++|.++|+.+++.+.++...
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 46899999999999998887321 14467777 357888875 4899999999999988876643
Q ss_pred CCceEEEEEcCCCcEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 303 FMTPSAFIFLYENQLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
..+..++|+|||+++++.. + ++|.++|. +++++.++.-..... .+.++|+|||++|...
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~----p~~la~~~d~~~lyv~---- 242 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW----PSEVQLNGTRDTLYWI---- 242 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC----CEEEEECTTSCEEEEE----
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC----ceeEEEecCCCEEEEE----
Confidence 3578899999999999887 6 79999999 699888776322211 5799999999999775
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCE
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNE 449 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~ 449 (464)
+++|.+||+.+|+....-.... .....+.++++| +|+.
T Consensus 243 ---------~~~v~~~d~~t~~~~~~~~~~~--------------------------------~~~~p~gi~vdp~~g~l 281 (328)
T 3dsm_A 243 ---------NNDIWRMPVEADRVPVRPFLEF--------------------------------RDTKYYGLTVNPNNGEV 281 (328)
T ss_dssp ---------SSSEEEEETTCSSCCSSCSBCC--------------------------------CSSCEEEEEECTTTCCE
T ss_pred ---------ccEEEEEECCCCceeeeeeecC--------------------------------CCCceEEEEEcCCCCeE
Confidence 4489999999888531100000 012678999999 5555
Q ss_pred EEEe----eCCCcEEecc
Q 012410 450 IYTG----NRHGLVHVWS 463 (464)
Q Consensus 450 LaSg----s~DgtVrlWd 463 (464)
.++. ..+++|.+||
T Consensus 282 yva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 282 YVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp EEEECTTSSSEEEEEEEC
T ss_pred EEEcccccccCCEEEEEC
Confidence 5665 6789999997
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=177.06 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=157.6
Q ss_pred ceEEEEeCCCCcEEE-----EecCCCcEEEEeCCCCeEE-E-EecCCCEeEEEEeCC--------Ccee-----------
Q 012410 188 PGFVEFDDVNGKVLT-----YSAQDSIYKVFDLKNYTML-Y-SISDKHVQEIKIRSS--------SHVP----------- 241 (464)
Q Consensus 188 ~~~VaFs~pdGk~La-----Sgs~D~tiKlWdl~tg~~l-~-tl~~~~V~~Vafs~s--------~d~t----------- 241 (464)
...++|| |||+.|| +|+.+.+|+|||+++|+.+ . .+......+++|+|+ .|.+
T Consensus 123 ~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 123 LGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 4479998 9999999 5666789999999999975 2 222222267888874 3334
Q ss_pred --EEEEEcCCCc----EEEEEeeCCcceeeEEEEccCCCeEEEEeCCC----eEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 242 --LKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 242 --IklWdi~tG~----~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~----tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
|++|++.+|+ ++.....+...+..+.|+| ++..|++.+.++ .|.+||..+++... +..+...+...++
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA 279 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe
Confidence 9999999987 3333323324668999999 467777766554 67777776776544 4445556677767
Q ss_pred cCCCcEEEEEe----CCeEEEEeC-CCce--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 312 LYENQLFLTFR----NRTVAVWNF-RGEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 312 spdgqllaS~s----D~TIklWd~-~Ge~--l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|+|++++++. +++|.+||+ +|+. .+.+..|. .+ .+.+++|+ ++.+++++.. |++.
T Consensus 280 -~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~----~l~~~~~~-~~~lv~~~~~-----------dg~~ 342 (695)
T 2bkl_A 280 -WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA----SLLSVSIV-GGHLSLEYLK-----------DATS 342 (695)
T ss_dssp -ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC----EEEEEEEE-TTEEEEEEEE-----------TTEE
T ss_pred -cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC----eEEEEEEE-CCEEEEEEEE-----------CCEE
Confidence 5666666554 379999999 5663 34444443 33 27889998 8889999887 8999
Q ss_pred EEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EeeCCCc
Q 012410 384 NVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGL 458 (464)
Q Consensus 384 klWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La----Sgs~Dgt 458 (464)
+||.+. +|++++.+..+.. ..|.+++++|||+.|+ |....++
T Consensus 343 ~l~~~~~~g~~~~~l~~~~~---------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPGV---------------------------------GAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEEEETTCCEEEECCCSSS---------------------------------SEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCeeEEecCCCC---------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 998664 6888888865521 0677789999999888 5566788
Q ss_pred EEeccC
Q 012410 459 VHVWSN 464 (464)
Q Consensus 459 VrlWd~ 464 (464)
|.+||.
T Consensus 390 v~~~d~ 395 (695)
T 2bkl_A 390 IYKTSV 395 (695)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999974
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-16 Score=149.33 Aligned_cols=210 Identities=9% Similarity=0.043 Sum_probs=166.6
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeCC------CceeEEEEEcCCCcEEEEEeeC-CcceeeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRSS------SHVPLKILSIEDGTVLKVFYHL-LHRNKKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s------~d~tIklWdi~tG~~l~tl~~~-~~~~~~V 266 (464)
.|++|++++.|+.|.+||.++|+.+.++.. ..+.+++++|+ .+..|..||. +|+.+.++... ...+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 357999999999999999999999988874 36889999885 4578999999 89999999842 2466888
Q ss_pred EEEccCCCeEEEEeC-CCeEEEEECCCCcEEEEcc------cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE
Q 012410 267 DFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 338 (464)
Q Consensus 267 ~F~~~~~~~lla~s~-D~tIkIWDv~tg~~l~~l~------gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t 338 (464)
.+.++ +..+++.+. ++.|..+| .+|+.+..+. ++...+..++++++|+++++.+ ++.|..||.+|+.+.+
T Consensus 83 ~~~~d-G~~lv~~~~~~~~v~~vd-~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 83 RILPD-GNALVAWCGHPSTILEVN-MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp EECTT-SCEEEEEESTTEEEEEEC-TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred EECCC-CCEEEEecCCCCEEEEEe-CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 88873 445555555 78888888 4888776543 2334567788999999999999 9999999999999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+..+. + ..++.+.|+|++|++++. ++.|..+|..||+.+.++..+.. +
T Consensus 161 ~~~~~-~-----~~~~~~~~~g~~~v~~~~-----------~~~v~~~d~~tG~~~w~~~~~~~-~-------------- 208 (276)
T 3no2_A 161 VKLSG-T-----PFSSAFLDNGDCLVACGD-----------AHCFVQLNLESNRIVRRVNANDI-E-------------- 208 (276)
T ss_dssp EECSS-C-----CCEEEECTTSCEEEECBT-----------TSEEEEECTTTCCEEEEEEGGGS-B--------------
T ss_pred EECCC-C-----ccceeEcCCCCEEEEeCC-----------CCeEEEEeCcCCcEEEEecCCCC-C--------------
Confidence 98763 2 457889999999998875 77999999999999999975431 0
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+..|..+.+++..|+|+++++.+
T Consensus 209 -------------~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 209 -------------GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -------------SCCCSEEEEEEECTTSCEEEEEE
T ss_pred -------------CccccccccceEcCCCCEEEEec
Confidence 00123678888899999888873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-15 Score=143.54 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=159.8
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
..+..+. .+.....+++|+|+|+.|..++ ..+ ..+..|+..++ . ..+.. ....|..++|+ |||
T Consensus 18 ~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~---~~~------~~i~~~~~~~~-~----~~~~~-~~~~~~~l~~~-~dg 80 (296)
T 3e5z_A 18 AEARRLA-DGFTWTEGPVYVPARSAVIFSD---VRQ------NRTWAWSDDGQ-L----SPEMH-PSHHQNGHCLN-KQG 80 (296)
T ss_dssp CCCEEEE-CCCSSEEEEEEEGGGTEEEEEE---GGG------TEEEEEETTSC-E----EEEES-SCSSEEEEEEC-TTC
T ss_pred CcEEEEe-cCCccccCCeEeCCCCEEEEEe---CCC------CEEEEEECCCC-e----EEEEC-CCCCcceeeEC-CCC
Confidence 3334442 2456688999999999444433 333 58888887665 2 22321 23456789997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEeCCCceeE-----------------------EEEEcCC
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIRSSSHVPL-----------------------KILSIED 249 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs~s~d~tI-----------------------klWdi~t 249 (464)
+++++...++.|.+||.++|++..... ...+.+|+++|+...-+ .||.+..
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 999988888999999999998754332 23567888887533222 5666543
Q ss_pred -CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcE---EEEcccCCCceEEEEEcCCCcEEEEEeCC
Q 012410 250 -GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL---MEVSRTEFMTPSAFIFLYENQLFLTFRNR 324 (464)
Q Consensus 250 -G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~---l~~l~gh~~~v~sv~FspdgqllaS~sD~ 324 (464)
|+.. .+.........++|+|+ +..+++.+.++.|++||+. +|++ .+++..+...|..++|+++|+++++. ++
T Consensus 161 ~g~~~-~~~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~ 237 (296)
T 3e5z_A 161 DGTLS-APIRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GD 237 (296)
T ss_dssp TSCEE-EEECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TT
T ss_pred CCCEE-EeecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CC
Confidence 5543 34433355688999884 5555445688999999997 6776 44554456678899999999999888 89
Q ss_pred eEEEEeCCCceEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEEec
Q 012410 325 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 368 (464)
Q Consensus 325 TIklWd~~Ge~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaSgs~ 368 (464)
.|.+||.+|+++..+..+.. +.+++| +|||+.|..++.
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEET
T ss_pred eEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcC
Confidence 99999999999999988765 357899 799998888764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-14 Score=131.02 Aligned_cols=260 Identities=10% Similarity=0.062 Sum_probs=185.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
+...++++++.++|..+++ ...+ ..+..++.. |+.. .+. ......|..++++ ++|.++++...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~----~~~~------~~v~~~d~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 76 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWIT----QHKA------NMISCINLD-GKIT----EYPLPTPDAKVMCLTIS-SDGEVWFTENA 76 (299)
T ss_dssp SSCCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-CCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred cCCCccceEECCCCCEEEE----ecCC------CcEEEEcCC-CCeE----EecCCcccCceeeEEEC-CCCCEEEeCCC
Confidence 4567999999999997776 2222 467777755 5542 111 0112456689997 89999998877
Q ss_pred CCcEEEEeCCCCeEE-EEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTML-YSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~ 274 (464)
++.|..||.+ ++.. ..+. ...+..|++.|+ .+..|..||. +|+...... ........+++.++ +
T Consensus 77 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~--g 152 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD--N 152 (299)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--S
T ss_pred CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC--C
Confidence 8899999986 5542 3333 457899999873 3457888888 777654322 22345688888764 5
Q ss_pred eEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCC
Q 012410 275 KLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 275 ~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~ 350 (464)
.+.++. .++.|..||. +|+.... +..+...+.++++.|+|+++++.. ++.|.+||.+|+.... +..+...
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~----- 226 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNAR----- 226 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC-----
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCC-----
Confidence 666654 6789999998 8887664 445566799999999999999887 8999999998775432 3333333
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc--cCCCCCCcccccCCCCCCcccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++++|+|++.++... ++.|..||. +|+. ..+. ++..
T Consensus 227 ~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~-~~~~~~~~~~-------------------------- 267 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWG-----------ANKIGRLTS-NNII-EEYPIQIKSA-------------------------- 267 (299)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEEET-TTEE-EEEECSSSSC--------------------------
T ss_pred ceeEEECCCCCEEEeccC-----------CceEEEECC-CCce-EEEeCCCCCC--------------------------
Confidence 789999999998887643 789999998 6763 3332 2221
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.+.++++ ++|+..++.+.++.+++
T Consensus 268 --------~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 268 --------EPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp --------CEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred --------ccceEEe-cCCCEEEEecCCcEEEE
Confidence 7899999 99998888776766665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-14 Score=153.37 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=212.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~ 175 (464)
+-++.+...++.+.++|..+++.+..+..+. .+..+.|||||+.+.+++ .+ ..+.++|+. +++...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~----~d------g~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc----CC------CeEEEEECCCCCCcEeE
Confidence 3456666778999999999999999985532 467999999999998844 33 489999985 666543
Q ss_pred cccceeeccccCceEEEEeC---CCCcEEEEecC-CCcEEEEeCCCCeEEEEecCC-------------CEeEEEEeCC-
Q 012410 176 GFALFESESLKWPGFVEFDD---VNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDK-------------HVQEIKIRSS- 237 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~---pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~-------------~V~~Vafs~s- 237 (464)
..+ .-..|..++||+ |||++|..+.. +++|.|+|..|.+.+.++... .|..|.+|+.
T Consensus 235 ~i~-----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 235 EIK-----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EEE-----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EEe-----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 221 113466899975 69998876655 599999999999999887621 5677777763
Q ss_pred --------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEccc-----C
Q 012410 238 --------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT-----E 302 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~g-----h 302 (464)
..+.|.++|.++.+.++.-. ........+.|.| ++.+++++. .+++|.++|+.+++++..... |
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence 45677788877665444322 1223346778888 466777754 789999999999998876543 3
Q ss_pred CCceEEEEEcCC-CcEEEEEe--CCeEEEEeC-C-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 303 FMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 303 ~~~v~sv~Fspd-gqllaS~s--D~TIklWd~-~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
...-..+ |.|+ |.+++++. +++|.++|. . .+.++++...... -.-|.++||+++|.....-.|
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----SLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCSEEEEECTTCS
T ss_pred Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----CEEEEeCCCCCeEEEecCCCC
Confidence 2212222 6787 66777775 799999998 4 4678888865322 123778999999887542111
Q ss_pred ccccccCCCCeEEEEeCCCC------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 012410 372 EDQWMEGSAGSINVSSILTG------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 445 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp 445 (464)
|.. -.++|-++|+.+. +++..+.- .-|+..++.-+.++.+.|+|
T Consensus 463 ~~~----~~~~v~v~d~~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 463 EAE----ISGSVAVFDIKAMTGDGSDPEFKTLPI--------------------------AEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp SHH----HHTCEEEEEGGGCCCSSSCCCEEEECH--------------------------HHHHTCCSSCCEEEEEEECT
T ss_pred Ccc----cCceEEEEECCcccccccCCCcEEecc--------------------------ccccccCCCCcceEeeeECC
Confidence 100 0369999999876 23334320 00111222223789999999
Q ss_pred CCCEEEEee-----CCCcEEecc
Q 012410 446 ERNEIYTGN-----RHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs-----~DgtVrlWd 463 (464)
||++|+.+. .++.|-|.|
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEEE
Confidence 999988763 368887766
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-14 Score=143.41 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=187.1
Q ss_pred hccCCeEEeeecccccEeeEe----ec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 104 LAHSGVCAAFSRETNRRICFL----NV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~l----n~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
...++.+..+|..+++...++ |. ......+++.+. ++ .|.++. ..+ .++.++|..+|+....++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~-~lyv~~---~~~------~~v~viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DG-IGWIVV---NNS------HVIFAIDINTFKEVGRIT 81 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TT-EEEEEE---GGG------TEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CC-EEEEEE---cCC------CEEEEEECcccEEEEEcC
Confidence 345789999999999977765 21 122456888874 34 444433 223 589999999999755432
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC------CEeEEEEeC-------C-CceeEE
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQEIKIRS-------S-SHVPLK 243 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~------~V~~Vafs~-------s-~d~tIk 243 (464)
....|..++|+ +||++.++...+++|.+||+++++.+.++. .. ....|++.. . .+.+|.
T Consensus 82 -----~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 82 -----GFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRIL 155 (328)
T ss_dssp -----CCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEE
T ss_pred -----CCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEE
Confidence 23678899997 789887777689999999999999987776 33 566777632 1 377999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC----------CeEEEEECCCCcEEEEcccC-CCceEEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN----------ENLQILDVRNAELMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D----------~tIkIWDv~tg~~l~~l~gh-~~~v~sv~F 311 (464)
++|+++|++++++... .....++|.++ ++++++. .+ +.|.++|..+++.++++.-. ...+..++|
T Consensus 156 viD~~t~~~~~~i~~g-~~p~~i~~~~d--G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 156 KIDTETDKVVDELTIG-IQPTSLVMDKY--NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEETTTTEEEEEEECS-SCBCCCEECTT--SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEECCCCeEEEEEEcC-CCccceEEcCC--CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 9999999999988732 23367888774 6677654 33 79999999999988765432 247999999
Q ss_pred cCCCcEEEEEeCCeEEEEeC-CCceEE--EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFRNRTVAVWNF-RGELVT--SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~sD~TIklWd~-~Ge~l~--tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+||++.|..+. ++|.+||. +|++.. .+..+... .+.++++| +|.+.++...+ -..+++|.+||
T Consensus 233 ~~d~~~lyv~~-~~v~~~d~~t~~~~~~~~~~~~~~~-----p~gi~vdp~~g~lyva~~~~-------y~~~~~V~v~d 299 (328)
T 3dsm_A 233 NGTRDTLYWIN-NDIWRMPVEADRVPVRPFLEFRDTK-----YYGLTVNPNNGEVYVADAID-------YQQQGIVYRYS 299 (328)
T ss_dssp CTTSCEEEEES-SSEEEEETTCSSCCSSCSBCCCSSC-----EEEEEECTTTCCEEEEECTT-------SSSEEEEEEEC
T ss_pred ecCCCEEEEEc-cEEEEEECCCCceeeeeeecCCCCc-----eEEEEEcCCCCeEEEEcccc-------cccCCEEEEEC
Confidence 99988876654 49999999 577642 12221122 57899999 67777775110 01279999999
Q ss_pred CCCCeEEEEEcc
Q 012410 388 ILTGKCLAKINA 399 (464)
Q Consensus 388 i~tG~cl~tl~g 399 (464)
.. |+.++++..
T Consensus 300 ~~-g~~~~~i~~ 310 (328)
T 3dsm_A 300 PQ-GKLIDEFYV 310 (328)
T ss_dssp TT-CCEEEEEEE
T ss_pred CC-CCEEEEEEe
Confidence 86 999999864
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-15 Score=139.66 Aligned_cols=223 Identities=11% Similarity=0.005 Sum_probs=158.8
Q ss_pred CceEEEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEE
Q 012410 187 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 187 ~~~~VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl 256 (464)
.|..++|+ ++|++++ +.+.++.|.+||..++....... ...+..|++.++ .++.|.+||..++.. ..+
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EEC
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eee
Confidence 67799997 8999888 66788999999987655432111 246788898764 256788898875543 333
Q ss_pred e-eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCC
Q 012410 257 Y-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 333 (464)
Q Consensus 257 ~-~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~G 333 (464)
. ........+++.++ +.+.++ ..++.|.+||..+.........+...+..++++|+|+++++.. ++.|.+||..+
T Consensus 103 ~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred ecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 3 22245688998773 556665 5788999998777665544444556789999999999999988 89999999965
Q ss_pred c-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 334 E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 334 e-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
. .......+... ...|+++|||.+.++... ++.|.+||..+.........+
T Consensus 181 ~~~~~~~~~~~~~-----p~~i~~d~~g~l~v~~~~-----------~~~v~~~~~~~~~~~~~~~~~------------ 232 (270)
T 1rwi_B 181 NNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGSTTSTVLPFTG------------ 232 (270)
T ss_dssp CCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TSCEEEECTTCSCCEECCCCS------------
T ss_pred CceEeecccCCCC-----ceEEEECCCCCEEEEECC-----------CCcEEEEcCCCCcceeeccCC------------
Confidence 4 33333333333 689999999998888754 789999998655433211111
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+..+.+++++|||+.+++.+.+++|++++
T Consensus 233 ----------------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 ----------------------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp ----------------------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ----------------------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 12789999999999999999999999986
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=166.73 Aligned_cols=223 Identities=11% Similarity=0.071 Sum_probs=153.6
Q ss_pred ceEEEEeCCCCcEEEEecCC-----CcEEEEeCCCCeEEEE-ecCCCEeEEEEeCC-------C--------------ce
Q 012410 188 PGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTMLYS-ISDKHVQEIKIRSS-------S--------------HV 240 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D-----~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~s-------~--------------d~ 240 (464)
...++|| |||+.||+++.+ .+|++||+++|+.+.. +....+.+++|+|+ . ..
T Consensus 165 ~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 165 LDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred EEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 3479998 999999998765 5799999999998652 22111234555543 1 22
Q ss_pred eEEEEEcCCCcE--EEEEeeCCc--ceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCC--cEEEEcccCCCceEEE
Q 012410 241 PLKILSIEDGTV--LKVFYHLLH--RNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA--ELMEVSRTEFMTPSAF 309 (464)
Q Consensus 241 tIklWdi~tG~~--l~tl~~~~~--~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg--~~l~~l~gh~~~v~sv 309 (464)
.|++|++.+++. ...+....+ .+..+.|+| ++..|++.+.+ ..|.+||+.++ ++.+.+..+...+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 489999988862 223332222 468899988 45667776543 48999999988 5245555565556665
Q ss_pred EEcCCCcEEEEEe-CC----eEEEEeCC-C--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 310 IFLYENQLFLTFR-NR----TVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 310 ~FspdgqllaS~s-D~----TIklWd~~-G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+ +|||+.|+..+ ++ .|.+||+. + +....+.++... +.+++++ ++.+++++.. |+
T Consensus 323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-----l~~~~~~-~~~lv~~~~~-----------dg 384 (741)
T 1yr2_A 323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN-----LESVGIA-GNRLFASYIH-----------DA 384 (741)
T ss_dssp E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE-----EEEEEEE-BTEEEEEEEE-----------TT
T ss_pred E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe-----EEEEEEE-CCEEEEEEEE-----------CC
Confidence 4 48888887766 33 49999994 4 344444444332 6778887 7788888886 88
Q ss_pred eEEEEeCC-CCeEEEEEccC-CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EeeC
Q 012410 382 SINVSSIL-TGKCLAKINAT-NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNR 455 (464)
Q Consensus 382 tIklWdi~-tG~cl~tl~gh-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La----Sgs~ 455 (464)
+.+||.+. +|++++.+..+ .. .|..++++||++.|+ |...
T Consensus 385 ~~~l~~~~~~g~~~~~l~~~~~~----------------------------------~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAVSLPGIG----------------------------------SASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp EEEEEEEETTSCEEEECBCSSSC----------------------------------EEEEEECCBTCSCEEEEEEETTE
T ss_pred EEEEEEEeCCCCceeeccCCCCe----------------------------------EEEEeecCCCCCEEEEEEcCCCC
Confidence 88888654 68888887643 22 688899999999887 5556
Q ss_pred CCcEEeccC
Q 012410 456 HGLVHVWSN 464 (464)
Q Consensus 456 DgtVrlWd~ 464 (464)
.++|.+||.
T Consensus 431 P~~i~~~d~ 439 (741)
T 1yr2_A 431 PATVLALDP 439 (741)
T ss_dssp EEEEEEEET
T ss_pred CCEEEEEEC
Confidence 788999873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=145.64 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=157.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+++|+ |++..+++.+.++++++| .++.+..+. ...+.+++|+|+ .++.|.+||.++|++...+...
T Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 85 (333)
T 2dg1_A 10 TLFYS-GKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH 85 (333)
T ss_dssp BCCSC-GGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS
T ss_pred eeeec-CCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC
Confidence 67886 788888888889999999 466666665 356788888763 4568999999999877655333
Q ss_pred CcceeeEEEEccCCCeEEEEe-CC----CeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEeC-------Ce
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQ-EN----ENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRN-------RT 325 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s-~D----~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~sD-------~T 325 (464)
...+..++|.++ ++++++. .+ +.|.+||..+++....+. .+...+..++|+|+|+++++... +.
T Consensus 86 ~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 86 KANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCcceEEECCC--CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 356789999874 5666654 55 699999999988765443 34567999999999999998762 34
Q ss_pred EEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCC
Q 012410 326 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~ 403 (464)
|-.+|..+..+..+..+... .+.++|+|||++| ++.+. ++.|.+||+.+ |+.+..+.....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~-----~~~i~~~~dg~~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~- 226 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQNISV-----ANGIALSTDEKVLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIP- 226 (333)
T ss_dssp EEEECTTSCCEEEEEEEESS-----EEEEEECTTSSEEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEE-
T ss_pred EEEEeCCCCEEEEeecCCCc-----ccceEECCCCCEEEEEeCC-----------CCeEEEEEecCCCcCcccccceEE-
Confidence 44445544333344443333 6799999999965 44433 78999999864 555443311000
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
... .....+..++++|||+.+++...++.|.+||
T Consensus 227 ---~~~-----------------------~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 227 ---YYF-----------------------TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp ---EEC-----------------------CSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred ---Eec-----------------------CCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 000 0001567899999999988888899999997
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-15 Score=159.88 Aligned_cols=243 Identities=11% Similarity=0.046 Sum_probs=171.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+...+.++.|||||+.||.++..++.+ -.++++||+.+|+... ....+. ....++|+ || +.|++++.|
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e-----~~~i~v~dl~tg~~~~---~~~~~~--~~~~~~ws-pD-~~l~~~~~~ 228 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSD-----WRTVKFVGVADGKPLA---DELKWV--KFSGLAWL-GN-DALLYSRFA 228 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCS-----EEEEEEEETTTCCEEE---EEEEEE--ESCCCEES-TT-SEEEEEECC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCc-----eEEEEEEECCCCCCCC---ccCCCc--eeccEEEE-CC-CEEEEEEec
Confidence 344789999999999999877553332 1589999999998742 111111 11378997 89 999999887
Q ss_pred Cc--------------EEEEeCCCCe----EEEEecCC--CEeEEEEeCCC-------------ceeEEEEEcCCC--cE
Q 012410 208 SI--------------YKVFDLKNYT----MLYSISDK--HVQEIKIRSSS-------------HVPLKILSIEDG--TV 252 (464)
Q Consensus 208 ~t--------------iKlWdl~tg~----~l~tl~~~--~V~~Vafs~s~-------------d~tIklWdi~tG--~~ 252 (464)
.+ |++|++.+++ +++...++ .+.++.|||++ ...|.+||+++| ++
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 75 8999998876 44444432 58889998841 347999999988 43
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeC----CCeEEEEECCCC--cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~----D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
++.+......+..+.+ + +++.|+..+. +..|.+||+.++ +...++.++...+.+++|+ +++++++.+ |++
T Consensus 309 ~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp CEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred cEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 5666533233444433 5 5678877664 456999999885 5566666666667788887 778899988 999
Q ss_pred EEEEeC--CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 326 VAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 326 IklWd~--~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+||.+ +|++++.+..+ ... |..++++||++.|+ +++. ....++|.+||+.+|+ +..|+.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~~l~~~~ss--------~~~P~~i~~~d~~tg~-~~~l~~ 449 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGS-----ASGLSGRPGDRHAYLSFSS--------FTQPATVLALDPATAK-TTPWEP 449 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCE-----EEEEECCBTCSCEEEEEEE--------TTEEEEEEEEETTTTE-EEECSC
T ss_pred EEEEEEeCCCCceeeccCCCCeE-----EEEeecCCCCCEEEEEEcC--------CCCCCEEEEEECCCCc-EEEEec
Confidence 888865 58888888754 333 78899999998665 3331 1236899999999998 556654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-14 Score=147.81 Aligned_cols=245 Identities=13% Similarity=0.149 Sum_probs=176.0
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCCC--------c--eeEEEEEcCCCcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSSS--------H--VPLKILSIEDGTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s~--------d--~tIklWdi~tG~~ 252 (464)
.+..|..|+|+ |+|+++++...++.|++||++++++...+.. .... ++|+|+. + ..|.+++..++..
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35678899997 8999999988889999999999888765543 3334 8887642 1 2788888887776
Q ss_pred EEEE----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCc-eE-EEEEcC-CCcEEEEE
Q 012410 253 LKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMT-PS-AFIFLY-ENQLFLTF 321 (464)
Q Consensus 253 l~tl----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~-v~-sv~Fsp-dgqllaS~ 321 (464)
+..+ .........++|.|. ++.|++...++.|..||..+++.... ..++... |. .++|+| +|.++++-
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~-~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDET-EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTT-SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCC-CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 6666 213355688999883 57788877789999999998875444 3333322 35 999999 68888888
Q ss_pred e-CCeEEEEeCCCceEEEeccCC---CCcC-------CCCeeEEEECCCCCEEEEEe-cCCCccccccCCCCeEEEEeCC
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHL---LWHP-------DCNTNNIYITSDQDLIISYC-KAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~---~~~~-------~~~v~svafSpDg~~LaSgs-~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+ +++|..||.+|+ +.++.|+. .+.. -..-+.++|+|||+++++-+ . .++|+.||+.
T Consensus 286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------~~~I~~~~~~ 353 (409)
T 3hrp_A 286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------GYCLRKLDIL 353 (409)
T ss_dssp TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------TCEEEEEETT
T ss_pred CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------CCEEEEEECC
Confidence 8 999999999888 55666664 0000 00157899999999888865 4 7899999988
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|+ +.++.|+... .+.. +| ......+...+.|+++|||+.+++-..++.|+..+
T Consensus 354 ~G~-v~~~~g~~~~-~g~~---~g---------------~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 354 DGY-VSTVAGQVDV-ASQI---DG---------------TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTE-EEEEEECTTC-BSCC---CB---------------STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCE-EEEEeCCCCC-CCcC---CC---------------ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 887 5666676320 0000 00 00112245789999999999999999999998754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-14 Score=133.22 Aligned_cols=223 Identities=12% Similarity=0.142 Sum_probs=163.5
Q ss_pred ccCceEEEEeCCCCcEEEE-------ecCCCcEEEEeCCCCeEEEE-e-----cCCCEeEEEEeCC-C-------ceeEE
Q 012410 185 LKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLYS-I-----SDKHVQEIKIRSS-S-------HVPLK 243 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaS-------gs~D~tiKlWdl~tg~~l~t-l-----~~~~V~~Vafs~s-~-------d~tIk 243 (464)
+..|..++|+ ++|.++++ +..++.|.+||..+|+.... . ....+..++++++ . ...|.
T Consensus 17 ~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 4567799997 89999888 67889999999999887532 2 1256889999775 2 23688
Q ss_pred EEEcCCCcEEEE-Eee----CCcceeeEEEEccCCCeEEEEe-CC---------------CeEEEEECCCCcEEEEcccC
Q 012410 244 ILSIEDGTVLKV-FYH----LLHRNKKVDFIEQFNEKLLVKQ-EN---------------ENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 244 lWdi~tG~~l~t-l~~----~~~~~~~V~F~~~~~~~lla~s-~D---------------~tIkIWDv~tg~~l~~l~gh 302 (464)
+||.+ |+.... ... ....+..+++.++ +.+.++. .+ +.|..||.. ++..... .+
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 89998 887543 221 1134688998774 5666654 44 567778865 7765443 34
Q ss_pred CCceEEEEEc----CCCc-EEEEEe-CCeEEEEeCC--Cc-----eEEEeccCC-CCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPSAFIFL----YENQ-LFLTFR-NRTVAVWNFR--GE-----LVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~sv~Fs----pdgq-llaS~s-D~TIklWd~~--Ge-----~l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
...+..++|+ |||+ ++++.. ++.|.+||.. |+ .+..+.++. .. ...++++|||+++++...
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-----ADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-----EEEEEEBTTCCEEEEEET
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC-----CCceEECCCCCEEEEEcC
Confidence 4568899999 9996 456656 8999999973 65 344555554 33 578999999999998764
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
++.|.+||..+|+.+..+..+.. .+.+++|+|||+
T Consensus 246 -----------~~~i~~~d~~~g~~~~~~~~~~~----------------------------------~~~~i~~~~dg~ 280 (314)
T 1pjx_A 246 -----------SSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFKPQTK 280 (314)
T ss_dssp -----------TTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEECTTSS
T ss_pred -----------CCEEEEEcCCCCcEeEEEeCCCC----------------------------------CceeEEECCCCC
Confidence 78999999988999888876643 789999999999
Q ss_pred EEEE-eeCCCcEEecc
Q 012410 449 EIYT-GNRHGLVHVWS 463 (464)
Q Consensus 449 ~LaS-gs~DgtVrlWd 463 (464)
.|+. .+.++.|..|+
T Consensus 281 ~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 281 TIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEe
Confidence 6654 45567787775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=131.99 Aligned_cols=217 Identities=12% Similarity=0.152 Sum_probs=156.9
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC------ceeEEEEEcCCCcEEEEEee-
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS------HVPLKILSIEDGTVLKVFYH- 258 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~------d~tIklWdi~tG~~l~tl~~- 258 (464)
.++....|++.+|.++.+...+++|..||.++++....-....+..++++|+. +..|.+||.++|+.......
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECC
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecC
Confidence 34457889844677888888899999999998876432235779999998853 35789999999876543332
Q ss_pred ---CCcceeeEEEEccCCCeEEEEe--C--------CCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEE-EEEe-
Q 012410 259 ---LLHRNKKVDFIEQFNEKLLVKQ--E--------NENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLF-LTFR- 322 (464)
Q Consensus 259 ---~~~~~~~V~F~~~~~~~lla~s--~--------D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspdgqll-aS~s- 322 (464)
...+...+++.++ +.+.++. . ....+||.+.. |+... +..+...+..++|+|||+.| ++.+
T Consensus 93 ~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp TTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCC
Confidence 1234578888774 5666654 2 23456666553 45443 34455678999999999855 5666
Q ss_pred CCeEEEEeC---CCce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 323 NRTVAVWNF---RGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 323 D~TIklWd~---~Ge~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+++|.+||+ +|++ +..+..+... ...+++.+||.+.++... .+.|..||..||+++
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~~G~lwva~~~-----------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-----PDGMCIDAEGKLWVACYN-----------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCE-----EEEEEEBTTSCEEEEEET-----------TTEEEEECTTTCCEE
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCC-----CCeeEECCCCCEEEEEcC-----------CCEEEEEcCCCceEE
Confidence 899999986 4664 2334443333 568999999999988764 788999999999999
Q ss_pred EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEeeC
Q 012410 395 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 455 (464)
Q Consensus 395 ~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSgs~ 455 (464)
.++..+.. .+++++|+ ||+++|+-++.
T Consensus 234 ~~i~~p~~----------------------------------~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVD----------------------------------KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSS----------------------------------BEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCC----------------------------------CceEEEEeCCCCCEEEEEcC
Confidence 99987754 79999999 99999876654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-13 Score=126.95 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=157.9
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
...+++++|+|..++++ ...+ ..+..++..++... .+.......|..++|+ ++|+++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~---~~~~------~~i~~~~~~~~~~~----~~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTS---EGMY------GRVVKLATGSTGTT----VLPFNGLYQPQGLAVD-GAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEE---CSSS------CEEEEECC-----E----ECCCCSCCSCCCEEEC-TTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEc---cCCC------CcEEEecCCCcccc----eEeeCCcCCcceeEEC-CCCCEEEEcC-CCEE
Confidence 57899999999977621 2233 46777765444321 1111123457789997 8999888776 8899
Q ss_pred EEEeCCCCeEEEEec--C-CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE
Q 012410 211 KVFDLKNYTMLYSIS--D-KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 279 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~-~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~ 279 (464)
.+||..+.... .+. . ..+..|++.|+ .+..|.+|+..++...............+++.++ +++.++
T Consensus 90 ~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~--g~l~v~ 166 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS--GNVYVT 166 (270)
T ss_dssp EEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT--CCEEEE
T ss_pred EEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC--CCEEEE
Confidence 99998765543 332 2 57899999874 2356777766554433222222235588998774 456665
Q ss_pred -eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEE
Q 012410 280 -QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 280 -s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svaf 356 (464)
..++.|.+||..++........+...+.++++.|+|.++++.. ++.|.+||..|.....+. .+... +.+++|
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----p~~i~~ 241 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT-----PLAVAV 241 (270)
T ss_dssp EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC-----EEEEEE
T ss_pred ECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC-----ceeEEE
Confidence 4678999999888877665555557899999999999999988 999999999765544433 33333 689999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|||+++++.+. +++|+++++...+
T Consensus 242 ~~~g~l~v~~~~-----------~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRG-----------NDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGG-----------GTEEEEECCCGGG
T ss_pred CCCCCEEEEECC-----------CCEEEEEcCCCcc
Confidence 999999888775 8999999976544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-13 Score=143.81 Aligned_cols=251 Identities=12% Similarity=0.033 Sum_probs=180.8
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec-CCCEeEEEEe--
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS-DKHVQEIKIR-- 235 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~-~~~V~~Vafs-- 235 (464)
.++.++|..+++....++ .. ..|..++|| |||++|..++.|++|.+||+. +++.+.++. ...-..++|+
T Consensus 177 ~~V~viD~~t~~v~~~i~---~g--~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLD---TG--YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 250 (567)
T ss_dssp TEEEEEETTTCCEEEEEE---CS--SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CeEEEEECCCCeEEEEEe---CC--CCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccc
Confidence 699999999998764332 11 234589997 899999999999999999996 889888887 5567899999
Q ss_pred --CC---------CceeEEEEEcCCCcEEEEEeeC-----------CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC
Q 012410 236 --SS---------SHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 293 (464)
Q Consensus 236 --~s---------~d~tIklWdi~tG~~l~tl~~~-----------~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg 293 (464)
|+ .+.+|.|+|..|+++++++.-. ..++..+.++++....++.-.++++|.++|..+.
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 55 3368999999999999987621 1256677777753333333468899999999886
Q ss_pred cEEEEc-ccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCE-EEEEe
Q 012410 294 ELMEVS-RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDL-IISYC 367 (464)
Q Consensus 294 ~~l~~l-~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~-LaSgs 367 (464)
+.+.+. ......+..+.|+|||++|+.+. +++|.++|. +|+++.++.- -..+|+.-.. ..++|++.. .++..
T Consensus 331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--~~~~p~~g~v~~t~~ 408 (567)
T 1qks_A 331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--NFVHPTFGPVWATSH 408 (567)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--EEEETTTEEEEEEEB
T ss_pred ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce--eeECCCCCcEEEeCC
Confidence 544321 22334577889999999887766 889999999 7999888764 3344442112 236898554 44443
Q ss_pred cCCCccccccCCCCeEEEEeCCC-------CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 368 KAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~t-------G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
. .+++|-++|..+ .+.++++.+... .=.-
T Consensus 409 ~----------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~----------------------------------g~~~ 444 (567)
T 1qks_A 409 M----------GDDSVALIGTDPEGHPDNAWKILDSFPALGG----------------------------------GSLF 444 (567)
T ss_dssp S----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCS----------------------------------CCCC
T ss_pred C----------CCCeEEEecCCCCCCccccCEEEEEEecCCC----------------------------------CCEE
Confidence 2 278999999988 567888876532 1112
Q ss_pred EEEcCCCCEEEEeeC-------CCcEEecc
Q 012410 441 LFYDEERNEIYTGNR-------HGLVHVWS 463 (464)
Q Consensus 441 lafspDg~~LaSgs~-------DgtVrlWd 463 (464)
|.++|||+.|+.... .++|.|+|
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 678999999998663 35787776
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-12 Score=117.95 Aligned_cols=264 Identities=9% Similarity=0.044 Sum_probs=180.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..+..++.. |++..+...++.+..|+.. ++........+...+.++++.++|..+++ ...+ ..+..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~------~~i~~~ 83 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFT----ENAA------NKIGRI 83 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTT------TEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEe----CCCC------CeEEEE
Confidence 345556555 7777766667889999855 66544332334567999999999997776 2222 355566
Q ss_pred EeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeCC-----
Q 012410 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~s----- 237 (464)
+.. |+. ..+.. .....|..++|+ |+|+++++...++.|.+||. +++... .+. ...+..+++.++
T Consensus 84 ~~~-g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 84 TKK-GII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CTT-SCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred CCC-CcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence 643 442 11211 122457789997 89999998888889999998 776653 333 356889999764
Q ss_pred ---CceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEE
Q 012410 238 ---SHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIF 311 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~F 311 (464)
....|..||. +|+.... +.........+++.++ +.+.++. .++.|.+||. +++.... +..+...|.++++
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND--DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC--CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 3467888998 7887653 2222345678888774 5566654 6889999998 8886553 4445678999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.|+|+++++.. ++.|..||.+|+.... +.++... +.++++ ++|++.++.+ .+.|..+|..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-----~~~i~~-~~g~l~v~~~------------~~~l~~~~~~ 294 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE-----PHGICF-DGETIWFAME------------CDKIGKLTLI 294 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCC-----EEEEEE-CSSCEEEEET------------TTEEEEEEEC
T ss_pred CCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCc-----cceEEe-cCCCEEEEec------------CCcEEEEEcC
Confidence 99999999886 8999999998765432 3444444 789999 9999998864 3455566666
Q ss_pred CCe
Q 012410 390 TGK 392 (464)
Q Consensus 390 tG~ 392 (464)
+++
T Consensus 295 ~~~ 297 (299)
T 2z2n_A 295 KDN 297 (299)
T ss_dssp ---
T ss_pred ccc
Confidence 553
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=134.91 Aligned_cols=174 Identities=8% Similarity=0.065 Sum_probs=138.4
Q ss_pred EeCCCceeEEEEEcCCCcEEEEEeeCC-cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCceEEEEE
Q 012410 234 IRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 234 fs~s~d~tIklWdi~tG~~l~tl~~~~-~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~F 311 (464)
+..+.++.|.+||.+||+.+.++..+. .....++++|. +.+++ +.++.|+.||. +|+.+..+..+ ...+.++.+
T Consensus 9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd--G~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA--GEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT--SCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC--CCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 445788999999999999999998532 35688999884 66777 66889999998 99999887765 346889999
Q ss_pred cCCCcEEEEEe--CCeEEEEeCCCceEEEec------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 312 LYENQLFLTFR--NRTVAVWNFRGELVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 312 spdgqllaS~s--D~TIklWd~~Ge~l~tl~------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+|||+++++.+ ++.|..+|.+|+.+.++. ++..+ .+.+++.|||++|++.+. ++.|
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~-----~~~v~~~~~G~~lv~~~~-----------~~~v 148 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQ-----FRQINKNKKGNYLVPLFA-----------TSEV 148 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGS-----CSCCEECTTSCEEEEETT-----------TTEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccc-----ccCceECCCCCEEEEecC-----------CCEE
Confidence 99999999977 456666677899998876 22222 456789999999998865 8999
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..||.. |+-+.++..+. .+.++.+.|+|++|++++.++.|..+|
T Consensus 149 ~~~d~~-G~~~w~~~~~~-----------------------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG-----------------------------------TPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EEECTT-SCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred EEECCC-CCEEEEEECCC-----------------------------------CccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 999986 99999997753 345677788888888888877777665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-14 Score=139.53 Aligned_cols=255 Identities=10% Similarity=0.088 Sum_probs=169.0
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce---eeccccCceEEEEeCCCCcEEEEecC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF---ESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~---~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.....|+++|+|+++++...+. .+ .++||.+..|++. .++.+ ..+.+.+|..|+|+ ++|++++..+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~-~~-------~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY-QP-------EMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG-CC-------SCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECH
T ss_pred CCcceEEECCCCCEEEEeCCCC-CC-------ceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCC
Confidence 5689999999999888843221 11 2567777655432 12211 12246678899997 89988776543
Q ss_pred -----CCcEEEEeCCCCeEEEEec--C------CCEeEEEEeCC------------CceeEEEEEcCCCcEEEEEeeCCc
Q 012410 207 -----DSIYKVFDLKNYTMLYSIS--D------KHVQEIKIRSS------------SHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 207 -----D~tiKlWdl~tg~~l~tl~--~------~~V~~Vafs~s------------~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+..|.+||+++|+.+.++. . ..+.+|+|.|. .+..|.+||.++|+..+.+.++..
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 6789999999999877654 1 24688999752 457899999999998777753211
Q ss_pred ce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC------C
Q 012410 262 RN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------G 333 (464)
Q Consensus 262 ~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~------G 333 (464)
.. ..+.|.++ +..+...+.|++++.|. ..+..++|+|||+.|..+. +++ +||.+. +
T Consensus 167 ~~~~~~~~~~~-g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 167 IAPEDIDLVID-GVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TSCCSCCCEET-TEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred ccccccceeEC-CEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 11 11344442 33334466788887774 2467899999999777776 553 666642 1
Q ss_pred c-----eEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 334 E-----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 334 e-----~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
. ... ...++... ...+++++||.+.++... +++|.+||..+|+. .++....
T Consensus 231 ~~~~~~~~~~~~~~g~~g~-----pdgia~d~~G~l~va~~~-----------~~~V~~~d~~~G~~-~~~~~~~----- 288 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPI-----CDGISIDKDHNIYVGDLA-----------HSAIGVITSADRAY-KLLVTDE----- 288 (343)
T ss_dssp TCCHHHHHTTCEEEEECCS-----CSCEEECTTCCEEEEEGG-----------GTEEEEEETTTTEE-EEEEECG-----
T ss_pred CCChhhhhcceEecccCCC-----CceEEECCCCCEEEEccC-----------CCeEEEEECCCCCE-EEEEECC-----
Confidence 1 110 12234332 357999999999998765 89999999767874 3332211
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.+..+.+++|+|||+.+++.+..+.+
T Consensus 289 ---------------------------~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 ---------------------------KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ---------------------------GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ---------------------------ceecCCeeEECCCCcEEEEeCccccc
Confidence 12378999999999999888865544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-11 Score=114.82 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=179.6
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.....++|++.++|..+++ ...+ ..+.+++.. |+.. .+.. .....|..++++ ++|.+.++...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~----~~~~------~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFT----QHKA------NKISSLDQS-GRIK----EFEVPTPDAKVMCLIVS-SLGDIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-SCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred CCCCcceeeECCCCCEEEE----cCCC------CeEEEECCC-CceE----EEECCCCCCcceeEEEC-CCCCEEEEecC
Confidence 4457899999999997776 2222 466667755 5542 1111 123457789997 89999988877
Q ss_pred CCcEEEEeCCCCeEE-EEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTML-YSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~ 274 (464)
++.|..+|.. |+.. ..+. ...+..+++.++ ....|..+|.+ |+.... +.........+++.++ +
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~--g 157 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD--N 157 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--S
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC--C
Confidence 8899999988 7654 2333 357899999763 24578888887 776632 2222345678888774 5
Q ss_pred eEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCC
Q 012410 275 KLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 275 ~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~ 350 (464)
.+.++. .++.|..+|. +++.... +.++...+..+++.++|+++++.. ++.|.++|.+|+.... +..+...
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~----- 231 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR----- 231 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC-----
T ss_pred CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCC-----
Confidence 566654 5789999998 7776653 334556799999999999999887 7899999998876553 3333333
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-EccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
+.++++.|+|++.++... ++.|..+|. +|+.... +....
T Consensus 232 ~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---------------------------- 271 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWG-----------ANQIGRITN-DNTIQEYQLQTEN---------------------------- 271 (300)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEECT-TSCEEEEECCSTT----------------------------
T ss_pred ceEEEECCCCCEEEeccC-----------CCeEEEECC-CCcEEEEECCccC----------------------------
Confidence 789999999998887643 689999997 6764322 11111
Q ss_pred cccccccCEEEEEEcCCCCEEEEee
Q 012410 430 TVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 430 ~~~~~l~~V~slafspDg~~LaSgs 454 (464)
..+.+++++|||+..++..
T Consensus 272 ------~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 272 ------AEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ------CCCCCEEECTTSCEEEECS
T ss_pred ------CccceeEeCCCCCEEEEcc
Confidence 1577899999999777766
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-11 Score=125.94 Aligned_cols=264 Identities=7% Similarity=-0.060 Sum_probs=175.9
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce-eec--cc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF-ESE--SL 185 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~-~~~--~~ 185 (464)
.+.++|..+++.+..+..+. . -.++|||||+.|.++..+.+..-.+-...++.++|..+++..+..++- ... ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-L--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-C--CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 78999999999998885532 2 289999999999986533211000001147888898888775543321 000 01
Q ss_pred cCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEE-ecCCCEeEEEEeC---------CCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKIRS---------SSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~---------s~d~tIklWdi~tG~~l 253 (464)
.+|..++|| |||+.|..+.. +.+|-++| ++++.+.+ +..... +.+.| ..|+.+.++|. +|+..
T Consensus 125 ~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 125 PYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 467789997 99999988764 57899999 99999888 762211 22222 25778899999 89887
Q ss_pred EEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEccc-------C---CCceEEEEEcCCC
Q 012410 254 KVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSRT-------E---FMTPSAFIFLYEN 315 (464)
Q Consensus 254 ~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~g-------h---~~~v~sv~Fspdg 315 (464)
.... +.........|.++ ++.++..+.++++.+.|+.+++. +..+.- . ......++|+||+
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEeccccccCCcceeecceeEec-CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 4322 11011123456664 45555555778999999876642 222210 1 1123347889998
Q ss_pred cEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCe
Q 012410 316 QLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+.+-.+. + ++|-+.|. +++.++++..-.. .+.++|||||+ +|+++.. .+++
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~------p~~i~~s~Dg~~~l~v~~~----------~~~~ 342 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD------VDAISVAQDGGPDLYALSA----------GTEV 342 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC------cCeEEECCCCCeEEEEEcC----------CCCe
Confidence 8665543 2 47999999 6999998864332 46899999999 7777652 2799
Q ss_pred EEEEeCCCCeEEEEE
Q 012410 383 INVSSILTGKCLAKI 397 (464)
Q Consensus 383 IklWdi~tG~cl~tl 397 (464)
|-++|+.|++.++++
T Consensus 343 V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 343 LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCCEEeee
Confidence 999999999999985
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-11 Score=123.40 Aligned_cols=274 Identities=8% Similarity=0.042 Sum_probs=178.8
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------
Q 012410 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---------- 205 (464)
Q Consensus 136 ~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs---------- 205 (464)
...|+++.+.++. . .++..+. ++.++|..+|+.....+ .+ ..| .++|| |||+.|..+.
T Consensus 27 ~~~~~~~~~yv~~--~-~~~~~~~--~v~v~D~~t~~~~~~i~---~g--~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 27 APGADGRRSYINL--P-AHHSAII--QQWVLDAGSGSILGHVN---GG--FLP-NPVAA-HSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCCEEEEeC--C-cccCCcc--EEEEEECCCCeEEEEec---CC--CCC-CeEEC-CCCCEEEEEeccccccccCC
Confidence 3447777665522 2 0111222 78888988888754322 11 235 89997 9999988775
Q ss_pred CCCcEEEEeCCCCeEEEEecC---------CCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEE-EeeCCcceee
Q 012410 206 QDSIYKVFDLKNYTMLYSISD---------KHVQEIKIRSS---------S-HVPLKILSIEDGTVLKV-FYHLLHRNKK 265 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~~---------~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~t-l~~~~~~~~~ 265 (464)
.+.+|-+||..+++.+.++.- ..-..++|+|+ . +..|.++| ++|+.+.+ +... ..
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~ 169 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TC 169 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ce
Confidence 367899999999998887652 23457889884 2 46799999 99999988 6521 22
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-----cCCCc-eEEEEEcCCCcEEEEEe-CCeEEEEeCC-C--ce
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-----TEFMT-PSAFIFLYENQLFLTFR-NRTVAVWNFR-G--EL 335 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-----gh~~~-v~sv~FspdgqllaS~s-D~TIklWd~~-G--e~ 335 (464)
+.+.|..+..+++.+.|+++..+|. +++...... ..... .....|++++..++-.+ .++|-+.|+. + +.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence 5566654445555678999999999 888764321 11111 12345777665544444 7899999984 3 23
Q ss_pred EEEecc------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 336 VTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 336 l~tl~g------H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
+.+++- ...|.+.. ...++|+|||+.|..+.....+.. -...+++|-+.|+.|++.+++|..-.
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~-~~~~~~~V~VID~~t~~vv~~i~~g~-------- 318 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLGH-------- 318 (373)
T ss_pred eeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCccc-ccCCCCeEEEEECCCCEEEEEEECCC--------
Confidence 344431 12232221 345889999998877653100000 00114689999999999999995432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEeccC
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd~ 464 (464)
..++++|+|||+ .||+++ .+++|.++|.
T Consensus 319 ---------------------------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 319 ---------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ---------------------------CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 467899999999 899998 5999999983
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-12 Score=118.96 Aligned_cols=245 Identities=10% Similarity=0.085 Sum_probs=154.3
Q ss_pred cceeeh-------hccCCeEEeeecccccEeeEee---cCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEE
Q 012410 98 RDIVFA-------LAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 98 g~~l~~-------l~~~g~~~~~~~~~g~~l~~ln---~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
|+++++ ...++.+..|+..+|+...... .++...+.+++++++ |..+++ + .. ..+.++
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~---~~-------~~l~~~ 97 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-D---MR-------LGLLVV 97 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-E---TT-------TEEEEE
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-E---CC-------CCEEEE
Confidence 677766 5778889999877887654332 013356899999999 765555 1 22 256777
Q ss_pred EeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+.. |+.... ...........|..++|+ |+|+++++.+.++.+ ..+.. .. .......|..+
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~----~~~~~-----~~--------~~~~~~~l~~~ 158 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVA----PADYT-----RS--------MQEKFGSIYCF 158 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCT----TSCCC-----BT--------TSSSCEEEEEE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccc----ccccc-----cc--------ccCCCCeEEEE
Confidence 866 765211 111111112456789997 899988876554200 00000 00 00111223333
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEE----ccCCCeEEEE-eCCCeEEEEECC-CCc-----EEEEcccCC-CceEEEEEcC
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFI----EQFNEKLLVK-QENENLQILDVR-NAE-----LMEVSRTEF-MTPSAFIFLY 313 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~----~~~~~~lla~-s~D~tIkIWDv~-tg~-----~l~~l~gh~-~~v~sv~Fsp 313 (464)
|.. |+......+. .....++|+ ++ +..+.++ ..++.|.+||+. +|+ ....+.++. ..+..+++++
T Consensus 159 ~~~-g~~~~~~~~~-~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 159 TTD-GQMIQVDTAF-QFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp CTT-SCEEEEEEEE-SSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred CCC-CCEEEeccCC-CCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 333 4433322221 334677887 63 3356565 478999999986 565 334455554 6789999999
Q ss_pred CCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+|+++++.. ++.|.+||.+ |+.+.++..+... +.+++|+|||++|..++. .++.|..+++.+
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~i~~~~dg~~l~v~~~----------~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEH----------ENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEET----------TTTEEEEEECSS
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC-----ceeEEECCCCCEEEEEeC----------CCCeEEEEeCCC
Confidence 999999987 8999999995 9998888877655 789999999995544432 267899999754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=130.69 Aligned_cols=272 Identities=12% Similarity=0.090 Sum_probs=183.8
Q ss_pred CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee---c
Q 012410 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---E 183 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~---~ 183 (464)
++.+.+.|..+++.+.++..+.. . . +++||||+.|.+++.+.+...++-...++.++|..+++..+..++-.. .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 57899999999999999976444 3 4 999999999988765433211111125799999999987654332110 0
Q ss_pred cccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEecCCCEeEEEEe--------CCCceeEEEEEcCC-CcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHVQEIKIR--------SSSHVPLKILSIED-GTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--------~s~d~tIklWdi~t-G~~ 252 (464)
.-.+|..++|+ |||+.|..+.. +++|-|+|+++++.+.++.-.... ..++ -+.|+.+-+.++++ |+.
T Consensus 135 ~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 135 VGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp BSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred cCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-eeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 11367789997 99998776653 689999999999999988632221 1121 13577888888876 777
Q ss_pred EEEEeeCC----cce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEcc---------c-CCCceEEEEEcCCC
Q 012410 253 LKVFYHLL----HRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR---------T-EFMTPSAFIFLYEN 315 (464)
Q Consensus 253 l~tl~~~~----~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~---------g-h~~~v~sv~Fspdg 315 (464)
..+..... ..+ ..++|.+. +++++..+.+++|.+.|+.++.. +.... + .-...-.++++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEeecceeccccccccccceeEcC-CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 54332111 111 12466543 46777777789999999877652 22111 0 00111246779888
Q ss_pred cEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCe
Q 012410 316 QLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+.+-... + ++|-+-|. +++.++++.--. . +++|+|||||+ +|.+.+. .+++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~-----~~~lavs~D~~~~ly~tn~----------~~~~ 355 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-----IDSINVSQDEKPLLYALST----------GDKT 355 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-----ECEEEECSSSSCEEEEEET----------TTTE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-C-----cceEEECCCCCeEEEEEcC----------CCCe
Confidence 8766653 1 47888899 799999876322 1 67999999997 6766543 3899
Q ss_pred EEEEeCCCCeEEEEEccC
Q 012410 383 INVSSILTGKCLAKINAT 400 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh 400 (464)
|-+.|..||+-++++..-
T Consensus 356 VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEEEEecCC
Confidence 999999999999999653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-11 Score=110.89 Aligned_cols=220 Identities=14% Similarity=0.065 Sum_probs=162.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
..|..|+++ ++|++.++...++.|.+||.. ++... .+. ...+..|++.++ .+..|..+|.. |+..
T Consensus 20 ~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 20 SGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence 456689996 899999988888999999988 76653 333 257889999763 34678889987 7764
Q ss_pred EEe--eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 255 VFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~--~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
.+. ........+++.+. +.+.++. .++.|..+|.. |+.... +......+.++++.|+|+++++.. ++.|..+
T Consensus 96 ~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 333 22345688888763 5666655 58899999987 777653 444556899999999999998888 8899999
Q ss_pred eCCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-EccCCCCCCcc
Q 012410 330 NFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVD 407 (464)
Q Consensus 330 d~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~ 407 (464)
|.+|+.... +.++... +..+++.|+|.+.++... .+.|.++|. +|+.... +..+.
T Consensus 173 ~~~g~~~~~~~~~~~~~-----~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~------ 229 (300)
T 2qc5_A 173 TNTGKLEEYPLPTNAAA-----PVGITSGNDGALWFVEIM-----------GNKIGRITT-TGEISEYDIPTPN------ 229 (300)
T ss_dssp CTTCCEEEEECSSTTCC-----EEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT------
T ss_pred CCCCcEEEeeCCCCCCC-----cceEEECCCCCEEEEccC-----------CCEEEEEcC-CCcEEEEECCCCC------
Confidence 998886642 2233333 789999999999887653 678999997 7775543 21111
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.+++++|+|+..++...++.|..+|
T Consensus 230 ----------------------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 230 ----------------------------ARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ----------------------------CCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred ----------------------------CCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 1688999999999777777778888776
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-11 Score=120.26 Aligned_cols=213 Identities=9% Similarity=0.014 Sum_probs=148.6
Q ss_pred ceEEEEeCCC-CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC------ceeEEEEEcCCCcEEEEEee--
Q 012410 188 PGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS------HVPLKILSIEDGTVLKVFYH-- 258 (464)
Q Consensus 188 ~~~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~------d~tIklWdi~tG~~l~tl~~-- 258 (464)
+...+|+ |+ +.++.++..++.|.+||.++++....-....|.+++++|+. ...|.+||.++|+.......
T Consensus 51 ~egp~~~-~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 51 GEGPTFD-PASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEEE-TTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSST
T ss_pred CcCCeEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC
Confidence 4478897 65 66777777889999999998876432225679999998752 23488999999986543321
Q ss_pred --CCcceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CCeEEEE
Q 012410 259 --LLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVW 329 (464)
Q Consensus 259 --~~~~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~TIklW 329 (464)
....+..+++.++ +.+.++..+ .+..||.+.+|+..... .+...+..++|+|||+.| ++.+ ++.|.+|
T Consensus 130 ~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp TCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEEEEeCCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 1134678888874 556665421 23445444467654433 344567899999999855 5555 8899999
Q ss_pred eC---CC-ce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 330 NF---RG-EL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 330 d~---~G-e~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|+ +| ++ +..+.++... ...+++.+||.+.++... ++.|.+||. +|+.+.++..+
T Consensus 207 d~~~~~Gl~~~~~~~~~~~~~~~~~-----p~gi~~d~~G~lwva~~~-----------~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 207 PLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEECT-TCCEEEEEECS
T ss_pred EcccccCCcccCceEEEECCCCCCC-----CCeeEECCCCCEEEEEeC-----------CCEEEEECC-CCCEEEEEECC
Confidence 97 36 42 3344433322 568999999999887654 688999997 89998888766
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEeeC
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 455 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSgs~ 455 (464)
.. .+++++|+ ||++.|+.++.
T Consensus 270 ~~----------------------------------~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GK----------------------------------QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CS----------------------------------BEEEEEEESTTSCEEEEEEB
T ss_pred CC----------------------------------CcEEEEEecCCCCEEEEEec
Confidence 54 79999999 99998865544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=142.41 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=146.5
Q ss_pred eEEEEeCCCCcEEEE-----ecCCCcEEEEeCCCCeEEE-EecC----CCEeE----EEEeCCC------------ceeE
Q 012410 189 GFVEFDDVNGKVLTY-----SAQDSIYKVFDLKNYTMLY-SISD----KHVQE----IKIRSSS------------HVPL 242 (464)
Q Consensus 189 ~~VaFs~pdGk~LaS-----gs~D~tiKlWdl~tg~~l~-tl~~----~~V~~----Vafs~s~------------d~tI 242 (464)
+.++|| |||+.||+ |+.+.+|+|||+++|+.+. ++.. .-.|+ |+|.... ...|
T Consensus 132 ~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 132 DQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp EEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEE
T ss_pred EEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEE
Confidence 378997 99999995 4455799999999999764 3321 12222 4442211 1349
Q ss_pred EEEEcCCCcE--EEEEee---CCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCc-EEEEcccCCCceEEEEEc
Q 012410 243 KILSIEDGTV--LKVFYH---LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE-LMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 243 klWdi~tG~~--l~tl~~---~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~Fs 312 (464)
++|++.+++. ...++. +.....++.|+| ++..|++.. .+..|.+||+.+++ ..+.+..+.........+
T Consensus 211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 289 (693)
T 3iuj_A 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN 289 (693)
T ss_dssp EEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEE
T ss_pred EEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEec
Confidence 9999988753 222332 222457889988 466666543 33589999998874 455666676666666444
Q ss_pred CCCcEEEEEe-C---CeEEEEeC-CCce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--eE
Q 012410 313 YENQLFLTFR-N---RTVAVWNF-RGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SI 383 (464)
Q Consensus 313 pdgqllaS~s-D---~TIklWd~-~Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg--tI 383 (464)
+++++++.+. | ..|.+||+ ++++ .++|..|... +. .|+|+|+.|+.... .|+ .|
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~----------~~g~~~l 352 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYM----------VDATARV 352 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEE----------ETTEEEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEE----------ECCeeEE
Confidence 5556666665 4 57889999 4655 5678888765 33 89999999887765 133 79
Q ss_pred EEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----Cc
Q 012410 384 NVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GL 458 (464)
Q Consensus 384 klWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gt 458 (464)
++||+. |+.++.+.- +.. .|..+.++||++.|+-...+ ++
T Consensus 353 ~~~d~~-g~~~~~l~~p~~~----------------------------------~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 353 EQFDYE-GKRVREVALPGLG----------------------------------SVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp EEECTT-SCEEEEECCSSSS----------------------------------EEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred EEEECC-CCeeEEeecCCCc----------------------------------eEEeeecCCCCCEEEEEecCCCCCCE
Confidence 999986 555565532 211 56778888999888766554 77
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
|.+||
T Consensus 398 l~~~d 402 (693)
T 3iuj_A 398 LYRFE 402 (693)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77776
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=137.76 Aligned_cols=244 Identities=11% Similarity=0.044 Sum_probs=165.6
Q ss_pred CCCceEEEEEEeeCCCEEEEEEee-cCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~-~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+...+.++.|||||+.||-++.. +++. .+++++|+.+|+... ...... ....++|+ ||+.|++++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~------~~i~v~dl~tg~~~~---~~~~~~--k~~~~~Ws--Dg~~l~y~~ 192 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDW------REIHLMDVESKQPLE---TPLKDV--KFSGISWL--GNEGFFYSS 192 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCE------EEEEEEETTTCSEEE---EEEEEE--ESCCCEEE--TTTEEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCce------EEEEEEECCCCCCCc---cccCCc--eeccEEEe--CCCEEEEEE
Confidence 344578999999999988864432 3344 799999999998632 111111 01378996 999999999
Q ss_pred CCCc-------------EEEEeCCCCe----EEEEecC---CCEeEEEEeCC------------CceeEEEEEcCCCc-E
Q 012410 206 QDSI-------------YKVFDLKNYT----MLYSISD---KHVQEIKIRSS------------SHVPLKILSIEDGT-V 252 (464)
Q Consensus 206 ~D~t-------------iKlWdl~tg~----~l~tl~~---~~V~~Vafs~s------------~d~tIklWdi~tG~-~ 252 (464)
.|.+ |++|++.+++ +++...+ ..+.++.+||+ ....|.+||+++++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 9855 9999998875 4554433 34678888874 22478999998874 4
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEe-C---CCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEe--CC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E---NENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR--NR 324 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s-~---D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~s--D~ 324 (464)
++.+.........+ +.+ +++++++.+ . ...|..+|+.++++ .+.+..|...+. .|+|+|+.|+... |+
T Consensus 273 ~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp CEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred eEEEeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 55665433333444 445 367777644 3 36899999998875 345566666665 8999999887766 54
Q ss_pred --eEEEEeCCCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 325 --TVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 325 --TIklWd~~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.|++||++|...+.+.- +... +..+.++||++.|+-...+ ...-++|..||+.+|+. ..|...
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~-----~~~~~~~~d~~~l~~~~ss-------~~tP~~l~~~d~~~g~~-~~l~~~ 414 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGS-----VSGFNGKHDDPALYFGFEN-------YAQPPTLYRFEPKSGAI-SLYRAS 414 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSE-----EEECCCCTTCSCEEEEEEC-------SSSCCEEEEECTTTCCE-EEEECC
T ss_pred eeEEEEEECCCCeeEEeecCCCce-----EEeeecCCCCCEEEEEecC-------CCCCCEEEEEECCCCeE-EEEEeC
Confidence 78999998777776653 2223 6678888998877655431 01238999999988874 445443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=129.44 Aligned_cols=211 Identities=11% Similarity=0.073 Sum_probs=149.3
Q ss_pred cCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEec---------CCCEeEEEEeCC--------C-----cee
Q 012410 186 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS---------DKHVQEIKIRSS--------S-----HVP 241 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~---------~~~V~~Vafs~s--------~-----d~t 241 (464)
.+|..|+|+ |||+++++.. .++.++||.+.+|++. .+. -..+..|+|.++ . +..
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 578899997 8999999864 2344788887777643 332 146899999873 1 357
Q ss_pred EEEEEcCCCcEEEEEeeC------CcceeeEEEEccCCCeEEEE-e---CCCeEEEEECCCCcEEEEcccCCC-ceEEEE
Q 012410 242 LKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFM-TPSAFI 310 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~------~~~~~~V~F~~~~~~~lla~-s---~D~tIkIWDv~tg~~l~~l~gh~~-~v~sv~ 310 (464)
|.+||+++|++++++... ......|+|.+. ++.+.++ + .++.|.+||+.+|+..+++.+|.. .+..+.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~-~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI-HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT-TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecC-CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 999999999998887621 123478999874 4566554 3 689999999999999998887632 222256
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|+++|+.|.+.+ |++++.|.. . ++.|+|||||++|..+.. ++. +||.+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~-------------~-----~~gia~s~dg~~ly~~~~-----------~~~-~l~~~~ 223 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL-------------G-----VNGIVLDAENEWLYLSPM-----------HST-SMYRIK 223 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC-------------C-----EEEEEECTTSCEEEEEES-----------SCS-EEEEEE
T ss_pred eeECCEEEEeccCCCceeceec-------------c-----cceeEeccCCCEEEEEeC-----------CCC-eEEEEE
Confidence 788999998888 999888751 1 678999999999988764 332 566553
Q ss_pred CCeE----------EE--EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 390 TGKC----------LA--KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 390 tG~c----------l~--tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
+... .. +..++.. ....+++++||+.+++...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g----------------------------------~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKP----------------------------------ICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECC----------------------------------SCSCEEECTTCCEEEEEGGGT
T ss_pred HHHhcCCCCChhhhhcceEecccCC----------------------------------CCceEEECCCCCEEEEccCCC
Confidence 2110 00 0001111 334689999999999999999
Q ss_pred cEEecc
Q 012410 458 LVHVWS 463 (464)
Q Consensus 458 tVrlWd 463 (464)
.|.+||
T Consensus 270 ~V~~~d 275 (343)
T 2qe8_A 270 AIGVIT 275 (343)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999997
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=124.28 Aligned_cols=221 Identities=10% Similarity=0.092 Sum_probs=158.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC--
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-- 208 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~-- 208 (464)
..+.|+++|+|+.+++ ...+ +.|+.++..+|++.. +... ...+. ++|+ |+|+.|..+..++
T Consensus 132 ~P~~la~d~~g~lyv~----d~~~------~~I~~id~~~g~~~~---~~~~--~~~~~-ia~~-~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAY----QRDD------PRVRLISVDDNKVTT---VHPG--FKGGK-PAVT-KDKQRVYSIGWEGTH 194 (409)
T ss_dssp CEEEEEECSTTEEEEE----ETTT------TEEEEEETTTTEEEE---EEET--CCBCB-CEEC-TTSSEEEEEBSSTTC
T ss_pred CceEEEEeCCCCEEEE----ecCC------CcEEEEECCCCEEEE---eecc--CCCCc-eeEe-cCCCcEEEEecCCCc
Confidence 4789999999986655 2334 689999987777631 1121 23455 9997 8999888888766
Q ss_pred cEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE----EeeCCcce-e-eEEE
Q 012410 209 IYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV----FYHLLHRN-K-KVDF 268 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t----l~~~~~~~-~-~V~F 268 (464)
.|.+||..++..+..+ ....+++++++|. .++.|..||.++++.... ..+..... . .++|
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 7889998877665555 2466888999882 446899999998874332 12222233 3 8999
Q ss_pred EccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccC---------------CCceEEEEEcCCCcEEEEEe--CCeEEEEe
Q 012410 269 IEQFNEKLLVK-QENENLQILDVRNAELMEVSRTE---------------FMTPSAFIFLYENQLFLTFR--NRTVAVWN 330 (464)
Q Consensus 269 ~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh---------------~~~v~sv~FspdgqllaS~s--D~TIklWd 330 (464)
.|. ++.|.++ ..++.|+.||.. |+ +.++.++ ...|..++|+|+|+++++-+ +++|+.||
T Consensus 275 ~p~-~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 275 YFV-DSNFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp ETT-TTEEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred eCC-CCEEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 994 4667665 588999999954 44 3444443 35799999999999988864 78999999
Q ss_pred C-CCceEEEeccCC---------------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 331 F-RGELVTSFEDHL---------------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~---------------~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
. +|+ +.++.|+. .+ .+.|+++|||.++++-.. .+.|+..++
T Consensus 352 ~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~-----P~giavd~~g~lyVad~~-----------n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGY-VSTVAGQVDVASQIDGTPLEATFNY-----PYDICYDGEGGYWIAEAW-----------GKAIRKYAV 408 (409)
T ss_dssp TTTTE-EEEEEECTTCBSCCCBSTTTCCBSS-----EEEEEECSSSEEEEEEST-----------TCEEEEEEE
T ss_pred CCCCE-EEEEeCCCCCCCcCCCChhceEeCC-----ceEEEEcCCCCEEEEECC-----------CCeEEEEEe
Confidence 6 676 56777761 22 579999999999988654 778877664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=133.01 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=176.9
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-........ .-+++++ .+..+++ ++.+ ..+.-+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v----~~~d------g~l~Al 136 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYV----GVLD------GRLEAI 136 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEE----ECTT------SEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEE----EccC------CEEEEE
Confidence 4778888888999999999999999887543221 1123333 3455555 2333 467778
Q ss_pred EeccCCCCCcccceeeccc---cCceEEEEeCC---CCcEEEEec-----CCCcEEEEeCCCCeEEEEecC---C-----
Q 012410 167 YIRRGKPDSGFALFESESL---KWPGFVEFDDV---NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---K----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~---~~~~~VaFs~p---dGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~---~----- 227 (464)
|.++|+. +|+.... .+...+..+ | +|++++.++ .|+.|..||.+||+++-++.. .
T Consensus 137 Da~TG~~-----~W~~~~~~~~~~~~~~~~s-P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 137 DAKTGQR-----AWSVDTRADHKRSYTITGA-PRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp ETTTCCE-----EEEEECCSCTTSCCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeecCcCCCCCCccccCC-cEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 8889986 3332211 000111111 2 777776543 378999999999999865531 0
Q ss_pred ------------------------CEe-EEEEeC--------CCce-------------------eEEEEEcCCCcEEEE
Q 012410 228 ------------------------HVQ-EIKIRS--------SSHV-------------------PLKILSIEDGTVLKV 255 (464)
Q Consensus 228 ------------------------~V~-~Vafs~--------s~d~-------------------tIklWdi~tG~~l~t 255 (464)
.+| .+++.| ..+. .|.-||.+||+.+..
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 111 455654 2332 499999999999998
Q ss_pred EeeCCcceee------EEEE--ccCCC---eEEEEeCCCeEEEEECCCCcEEEEcc-cCCCc------------------
Q 012410 256 FYHLLHRNKK------VDFI--EQFNE---KLLVKQENENLQILDVRNAELMEVSR-TEFMT------------------ 305 (464)
Q Consensus 256 l~~~~~~~~~------V~F~--~~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~------------------ 305 (464)
++...|..+. +.+. +.++. .+++++.|+.+.++|..||+++.... .+..+
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 8732222111 1111 11221 35567899999999999999883211 00000
Q ss_pred --------------------eEEEEEcCCCcEEEEEe-------------------------------------------
Q 012410 306 --------------------PSAFIFLYENQLFLTFR------------------------------------------- 322 (464)
Q Consensus 306 --------------------v~sv~FspdgqllaS~s------------------------------------------- 322 (464)
-..++|+|+.+++....
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 01268999988887653
Q ss_pred ---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 323 ---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 323 ---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+++|..||. +|+.+-+++.+..+ +.-.++..|.+++.|+. ||.|+.||..||+.|.+++
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~-----------dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSA-----------DGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCcceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECC-----------CCcEEEEECCCCccceeee
Confidence 278999999 79999988877654 33467778889999886 9999999999999999997
Q ss_pred cCC
Q 012410 399 ATN 401 (464)
Q Consensus 399 gh~ 401 (464)
...
T Consensus 514 ~~~ 516 (689)
T 1yiq_A 514 AAS 516 (689)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-12 Score=128.82 Aligned_cols=282 Identities=10% Similarity=0.050 Sum_probs=184.7
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---- 205 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs---- 205 (464)
+..-.+...|+|+.+.++. .. +..+. .++.+-|..+++..+..+ .+ .-|+ ++|| |||+.|..++
T Consensus 33 ~~~~~~~~~pd~~~vyV~~--~~--~~~~~-~~V~ViD~~t~~v~~~I~---vG--~~P~-va~s-pDG~~lyVan~~~~ 100 (386)
T 3sjl_D 33 EPRILEAPAPDARRVYVND--PA--HFAAV-TQQFVIDGEAGRVIGMID---GG--FLPN-PVVA-DDGSFIAHASTVFS 100 (386)
T ss_dssp CCCBCCCCCCCTTEEEEEE--CG--GGCSS-EEEEEEETTTTEEEEEEE---EC--SSCE-EEEC-TTSSCEEEEEEEEE
T ss_pred ccceeeccCCCCCEEEEEc--Cc--ccCCC-CEEEEEECCCCeEEEEEE---CC--CCCc-EEEC-CCCCEEEEEccccc
Confidence 3333456678999888844 22 11111 478888988888764333 22 3365 9997 8999886554
Q ss_pred ------CCCcEEEEeCCCCeEEEEec-C--------CCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 206 ------QDSIYKVFDLKNYTMLYSIS-D--------KHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 206 ------~D~tiKlWdl~tg~~l~tl~-~--------~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.+.+|.+||.++++.+.++. . ..-+.++|+|+ .+.+|.++|+++++.+.++.-.
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~- 179 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP- 179 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-
Confidence 36789999999999998875 1 14567899884 2578999999999999999632
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCC----ceE-EEEEc-CCCcEEEEEeCCeEEEEeCCC
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFM----TPS-AFIFL-YENQLFLTFRNRTVAVWNFRG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~----~v~-sv~Fs-pdgqllaS~sD~TIklWd~~G 333 (464)
.. ...+ |.....+++.+.||++-..++.+ ++...+...+++ .+. ..+|. +||+++..+.+++|.+-|+.+
T Consensus 180 -g~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 180 -DC-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp -SE-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred -Cc-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCC
Confidence 11 1222 43345566778899999999886 665433222322 111 13554 899876644489999999965
Q ss_pred ce---EEEec---c---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC
Q 012410 334 EL---VTSFE---D---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 404 (464)
Q Consensus 334 e~---l~tl~---g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~ 404 (464)
+- +..+. . -..|.+.- ...++++|+++.|.-.-....++. -.....+|-+-|+.|++.++++.--.
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~~-hk~~~~~V~viD~~t~kv~~~i~vg~--- 331 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEWR-HKTASRFVVVLDAKTGERLAKFEMGH--- 331 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEEE---
T ss_pred CcceeecceeccccccccccccCCC-cceeeECCCCCeEEEEeccccccc-cCCCCCEEEEEECCCCeEEEEEECCC---
Confidence 43 22222 0 01222211 235889999999887642100000 00113689999999999999985432
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeC-CCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNR-HGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~-DgtVrlWd~ 464 (464)
.+++|+|||||+ .||+.+. +++|.+.|.
T Consensus 332 --------------------------------~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 332 --------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp --------------------------------EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred --------------------------------CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 678999999997 8888765 899998873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-10 Score=109.72 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=154.3
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
..+..+-.+..|+|+++.|..+. ... ..+..|+..+|+. ..+.. -..|..++|+ |||+++++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d--~~~-------~~i~~~d~~~~~~----~~~~~--~~~~~~i~~~-~dG~l~v~~- 71 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVD--IPA-------KKVCRWDSFTKQV----QRVTM--DAPVSSVALR-QSGGYVATI- 71 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTTCCE----EEEEC--SSCEEEEEEB-TTSSEEEEE-
T ss_pred ccCCccccCCeEECCCCEEEEEE--CCC-------CEEEEEECCCCcE----EEEeC--CCceEEEEEC-CCCCEEEEE-
Confidence 34566788999999777776633 222 5788889777764 22332 2567799997 899977754
Q ss_pred CCCcEEEEeCCCCeEEEEe--c----CCCEeEEEEeCCCc-----------------eeEEEEEcC-CCcEEEEEeeCCc
Q 012410 206 QDSIYKVFDLKNYTMLYSI--S----DKHVQEIKIRSSSH-----------------VPLKILSIE-DGTVLKVFYHLLH 261 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl--~----~~~V~~Vafs~s~d-----------------~tIklWdi~-tG~~l~tl~~~~~ 261 (464)
+..|.+||.++++..... . ...+.++++.|+.. ..-+||.+. +|+......+ ..
T Consensus 72 -~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~ 149 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VD 149 (297)
T ss_dssp -TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ES
T ss_pred -CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cc
Confidence 567999999998864322 1 13478899977421 224666665 3555443333 24
Q ss_pred ceeeEEEEccCCCeEEE-EeCCCeEEEEEC--CCCcEE-----EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 262 RNKKVDFIEQFNEKLLV-KQENENLQILDV--RNAELM-----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla-~s~D~tIkIWDv--~tg~~l-----~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
....++|+|+ +..|.+ .+.++.|.+||+ .+|++. ..+..+...|..+++.++|++.++.. ++.|..||.
T Consensus 150 ~pngi~~spd-g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 150 ISNGLDWSLD-HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp BEEEEEECTT-SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred cccceEEcCC-CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 4578999984 555655 457899999997 677642 23344456789999999999999988 889999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEec
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafS-pDg~~LaSgs~ 368 (464)
+|+++.++..+... +.+++|+ ||++.|.-.+.
T Consensus 229 tG~~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 229 TGKRLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TCCEEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence 59999999887655 7899998 99998766654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-11 Score=129.34 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=177.4
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCC----------ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPD----------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~----------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-....... ...+++++ ++..+.+. +.+ ..+...
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~----~~d------g~l~al 143 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVG----AWD------GRLIAL 143 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEE----CTT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEE----cCC------CEEEEE
Confidence 477778888889999999999999988755321 11234544 34555552 333 467777
Q ss_pred EeccCCCCCcccce-eecc-ccCceEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEecC--CC---------
Q 012410 167 YIRRGKPDSGFALF-ESES-LKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD--KH--------- 228 (464)
Q Consensus 167 ~i~~G~~~~~~~l~-~~~~-~~~~~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~--~~--------- 228 (464)
|.++|+..-.+... .... .....+... .+|++++.++ .|+.|..+|.+||+.+-++.. ..
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 88888863222211 0000 000112222 2666666444 279999999999999866541 00
Q ss_pred ----------------------E-eEEEEeCC--------Cc-------------------eeEEEEEcCCCcEEEEEee
Q 012410 229 ----------------------V-QEIKIRSS--------SH-------------------VPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 229 ----------------------V-~~Vafs~s--------~d-------------------~tIklWdi~tG~~l~tl~~ 258 (464)
+ ..+++.|. .+ .+|..+|.+||+.+..++.
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1 13455442 22 1499999999999998873
Q ss_pred CCcc------eeeEEEEc--cCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCC-Cce--------------------
Q 012410 259 LLHR------NKKVDFIE--QFN---EKLLVKQENENLQILDVRNAELMEVSRTEF-MTP-------------------- 306 (464)
Q Consensus 259 ~~~~------~~~V~F~~--~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v-------------------- 306 (464)
..|. .....+.. .++ ..+++++.++.|.++|..||+.+....-.. .+.
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 2121 11112111 123 345567899999999999999886443110 000
Q ss_pred --------------EEEEEcCCCcEEEEEe-C-------------------------------------------CeEEE
Q 012410 307 --------------SAFIFLYENQLFLTFR-N-------------------------------------------RTVAV 328 (464)
Q Consensus 307 --------------~sv~FspdgqllaS~s-D-------------------------------------------~TIkl 328 (464)
.+++|+|+++++.... + ++|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 1568999988887754 3 78999
Q ss_pred EeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 329 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 329 Wd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
||. +|+.+-+++.... +++..++++|.+++.++. ||++++||..||+++.++.-..
T Consensus 462 ~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 462 WDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTA-----------DGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred EeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECC-----------CCcEEEEECCCCceeeeeeCCC
Confidence 999 7999888864432 345668888999998876 9999999999999999997544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-11 Score=114.24 Aligned_cols=216 Identities=9% Similarity=0.111 Sum_probs=152.0
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeE-EEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~-l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
..|+...+|+ |+|+ ++.++..++.|..|+. +|+. .+......+..++++++ .+..|.+|+.+ |+...
T Consensus 44 ~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp CSSEEEEEEE-GGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcCccCCeEe-CCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 3566789997 8998 7778888999999998 5653 23344667899999874 23578888876 77543
Q ss_pred EEeeC----CcceeeEEEEccCCCeEEEE-----eC-------------CCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 255 VFYHL----LHRNKKVDFIEQFNEKLLVK-----QE-------------NENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 255 tl~~~----~~~~~~V~F~~~~~~~lla~-----s~-------------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
..... ......+++.++ +.+.++ .. .+.|..+|..+|+..... +...+..++|+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 22211 123467888774 566663 21 356888888888876654 45678999999
Q ss_pred CCCcEEEEEe-C------CeEEEEeCC-CceEE---EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 313 YENQLFLTFR-N------RTVAVWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 313 pdgqllaS~s-D------~TIklWd~~-Ge~l~---tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|||+.|..+. + +.|.+||+. +. +. .+..-.... ...+++.+||++.++. . +
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~----pdgi~~d~~G~lwv~~-~-----------~- 258 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL----PDGFCVDRGGWLWSSS-G-----------T- 258 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC----CCSEEECTTSCEEECC-S-----------S-
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC----CCeEEECCCCCEEEec-C-----------C-
Confidence 9999665554 5 789999984 33 32 222111111 3468999999977654 2 4
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.+||. +|+.+.++..+. .+.+++|+||++.|+.++.++..++
T Consensus 259 gv~~~~~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 259 GVCVFDS-DGQLLGHIPTPG-----------------------------------TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEEECT-TSCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred cEEEECC-CCCEEEEEECCC-----------------------------------ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4999997 899999886543 4678999999999999998887776
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-11 Score=123.42 Aligned_cols=267 Identities=12% Similarity=0.015 Sum_probs=181.1
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce-ee--cc
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF-ES--ES 184 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~-~~--~~ 184 (464)
+.+.++|..+++.+..+..+. .. .+++||||+.|.+++.+.+....+-...++.+.|..+++..+..++- .. ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 789999999999999997654 33 89999999999986643211000111258889999998876543321 00 01
Q ss_pred ccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEecCCCE---e------EEEEeCCCceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHV---Q------EIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~~~~V---~------~Vafs~s~d~tIklWdi~tG~~l 253 (464)
...|..++|| |||+.|..+.. +++|-|.|+++++.+.++.-... . -++++ .|+.+-+.+..+|+..
T Consensus 176 g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~--~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 176 GTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNC--RDGSLARVDFADGETK 252 (426)
T ss_dssp SCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE--TTSSEEEEECCTTCCE
T ss_pred CCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEc--CCCCEEEEECCCCcEE
Confidence 1356789997 89998887664 68999999999999988873221 1 13344 3556666677777776
Q ss_pred EEE----eeCCcce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-----cccC----CCce---EEEEEcCCCc
Q 012410 254 KVF----YHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTE----FMTP---SAFIFLYENQ 316 (464)
Q Consensus 254 ~tl----~~~~~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-----l~gh----~~~v---~sv~Fspdgq 316 (464)
.+. .-....+ ..+.|.+ +++.++.....+++.+.|+.++..... .... ...+ ..++|+|||+
T Consensus 253 ~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 253 VTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 432 1000111 2355666 466777777788999999876653211 0000 0111 1368999977
Q ss_pred EEEEEe-----------CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 012410 317 LFLTFR-----------NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 317 llaS~s-----------D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtI 383 (464)
.+.... +++|-+.|. +++.++++.--.. .+.++|+|||+ +|++... .+++|
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~----------~s~~V 395 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSA----------GTQTL 395 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEET----------TTTEE
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcC----------CCCeE
Confidence 555442 247999999 7999998874332 46899999999 8888873 28999
Q ss_pred EEEeCCCCeEEEEE
Q 012410 384 NVSSILTGKCLAKI 397 (464)
Q Consensus 384 klWdi~tG~cl~tl 397 (464)
-++|+.|++.++++
T Consensus 396 sVID~~t~kvv~tI 409 (426)
T 3c75_H 396 HIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 99999999999998
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-13 Score=138.78 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=105.7
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeE--------EEEeCCCceeEEEEEcCCCcEEEEEeeCCc-ce-eeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE--------IKIRSSSHVPLKILSIEDGTVLKVFYHLLH-RN-KKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~--------Vafs~s~d~tIklWdi~tG~~l~tl~~~~~-~~-~~V 266 (464)
+|..|+.++.|+++..||.++|+++.++....+.+ +-+..+.|+.|..||.+||+++..++.+.. .+ .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 45688889999999999999999987665333222 222335789999999999999887763211 11 111
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
.+. .++.+++++.|++|..||..+|+++..+..+. ...++|++..+++++ |++|..||. +|+++-+++.+..
T Consensus 88 ~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~ 161 (369)
T 2hz6_A 88 CRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY 161 (369)
T ss_dssp CC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE
T ss_pred eEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc
Confidence 111 24677778899999999999999988776653 245678888888888 999999999 7998776653321
Q ss_pred CcCCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 345 WHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 345 ~~~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+.++++++ ..++.++. ||.|..||..+|+.+.+++-
T Consensus 162 -------~~~~~~~~~~~~~~v~~~~~-----------dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 162 -------AASLPEDDVDYKMSHFVSNG-----------DGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp -------CCBCCCCCTTCCCCEEEEET-----------SCEEEEECTTTCCEEEEEEC
T ss_pred -------cCccccCCccccceEEEECC-----------CCEEEEEECCCCcEEEEecC
Confidence 123345542 34455554 89999999999999988763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-09 Score=106.10 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=182.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCC--------CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSP--------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~--------~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
.++.|.+...++.+.++|..+|+.+-...... ...+.+...-.+ ..+.+.+ .+ ..+...|.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~----~~------g~l~a~d~ 120 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-GHVYIGS----EK------AQVYALNT 120 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-TEEEEEE----TT------SEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-CEEEEEc----CC------CEEEEEEC
Confidence 46777888889999999999999987775532 222333222233 4455522 33 46777888
Q ss_pred ccCCCCCcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEe------EEE------E
Q 012410 169 RRGKPDSGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------EIK------I 234 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~------~Va------f 234 (464)
++|+. +|+...-..+. ..... +| .|..++.|+.+..+|.++|+.+..... ..+. ..+ +
T Consensus 121 ~tG~~-----~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (376)
T 3q7m_A 121 SDGTV-----AWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAV 192 (376)
T ss_dssp TTCCE-----EEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEE
T ss_pred CCCCE-----EEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEE
Confidence 88886 33322111111 23332 55 555578899999999999998865542 1111 111 1
Q ss_pred eCCCceeEEEEEcCCCcEEEEEeeCCcc----------e-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC
Q 012410 235 RSSSHVPLKILSIEDGTVLKVFYHLLHR----------N-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 303 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~~l~tl~~~~~~----------~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~ 303 (464)
-...++.|..+|.++|+.+..+...... + ..... .++.+.+++.++.|..+|..+|+.+-.....
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~- 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKRELG- 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEECCC-
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeeccCC-
Confidence 2245778999999999999887632110 1 11111 2478888889999999999999987654422
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
...+.+. .++.+++...++.|..+|. +|+.+-..+...... +.+..+ .+..|..++. +|.
T Consensus 269 -~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~----~~~~~~--~~~~l~v~~~-----------~g~ 329 (376)
T 3q7m_A 269 -SVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL----LTSPVL--YNGNLVVGDS-----------EGY 329 (376)
T ss_dssp -CEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC----CCCCEE--ETTEEEEECT-----------TSE
T ss_pred -CCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc----ccCCEE--ECCEEEEEeC-----------CCe
Confidence 2333332 3555555555999999999 799887766322111 122222 2456666654 899
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEeeCCCcEEe
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafspDg~~LaSgs~DgtVrl 461 (464)
|..+|..+|+.+..++.... .+. +.+. .+..|+.++.||.|..
T Consensus 330 l~~~d~~tG~~~~~~~~~~~----------------------------------~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKVDSS----------------------------------GFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EEEEETTTCCEEEEEECCTT----------------------------------CBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred EEEEECCCCcEEEEEecCCC----------------------------------cceeCCEE--ECCEEEEEeCCCEEEE
Confidence 99999999999988765322 111 1111 2567899999999998
Q ss_pred cc
Q 012410 462 WS 463 (464)
Q Consensus 462 Wd 463 (464)
|+
T Consensus 374 ~~ 375 (376)
T 3q7m_A 374 IT 375 (376)
T ss_dssp EE
T ss_pred Ee
Confidence 86
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-09 Score=106.71 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=148.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~t 209 (464)
.+..+.+|+|+++.|..+. .. + ..+.+++..+|+.. .+... ..+.+++|+ |||+++++. .+ .
T Consensus 49 ~~~egp~~~~~~~~l~~~d--~~-~------~~i~~~d~~~~~~~----~~~~~--~~v~~i~~~-~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFN--IL-E------RELHELHLASGRKT----VHALP--FMGSALAKI-SDSKQLIAS-DD-G 110 (326)
T ss_dssp SBEEEEEEETTTTEEEEEE--GG-G------TEEEEEETTTTEEE----EEECS--SCEEEEEEE-ETTEEEEEE-TT-E
T ss_pred CCCcCCeEeCCCCEEEEEE--CC-C------CEEEEEECCCCcEE----EEECC--CcceEEEEe-CCCeEEEEE-CC-C
Confidence 4567788999877776643 22 2 57888887776542 22222 456689997 899988865 34 4
Q ss_pred EEEEeCCCCeEEEEec------CCCEeEEEEeCCCc------------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 210 YKVFDLKNYTMLYSIS------DKHVQEIKIRSSSH------------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~------~~~V~~Vafs~s~d------------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
|.+||.++|+...... ...+.+++++|+.. ....||.+.+|+......+ ......++|+|+
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~~i~~s~d 189 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD 189 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCC-CcccCCeEEcCC
Confidence 9999999998643222 13588999987421 1245555546765443332 234578999884
Q ss_pred CCCeEEEE-eCCCeEEEEECC--CC-c-----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEecc
Q 012410 272 FNEKLLVK-QENENLQILDVR--NA-E-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 341 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~--tg-~-----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~g 341 (464)
+..+.+. +.++.|.+||+. +| + .+..+.++...+..+++.++|.+.++.. ++.|.+||.+|+.+.++..
T Consensus 190 -g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 190 -GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp -SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC
T ss_pred -CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC
Confidence 5556554 578999999986 77 3 2334444556788999999999998887 7899999999999999887
Q ss_pred CCCCcCCCCeeEEEEC-CCCCEEEEEec
Q 012410 342 HLLWHPDCNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 342 H~~~~~~~~v~svafS-pDg~~LaSgs~ 368 (464)
+... +.+++|+ ||++.|..++.
T Consensus 269 ~~~~-----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQ-----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSB-----EEEEEEESTTSCEEEEEEB
T ss_pred CCCC-----cEEEEEecCCCCEEEEEec
Confidence 7655 7899998 99887755543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=124.47 Aligned_cols=178 Identities=9% Similarity=-0.006 Sum_probs=127.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
...++++ +.+.+|++|+.| .++||++++..-.. .. ...+ .+ -.++ ... .. +..|+
T Consensus 40 ~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~--~~---------~~~~-------~~-~~~~--~~l-p~-V~~l~ 94 (388)
T 1xip_A 40 LQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHI--TS---------DSTP-------LT-FKWE--KEI-PD-VIFVC 94 (388)
T ss_dssp CBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHH--HS---------SSCC-------CC-CSEE--EEC-TT-EEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhh--cc---------cccc-------cc-ceEE--eeC-CC-eeEEE
Confidence 3479998 788899999998 47789976432100 00 0000 11 0011 111 13 78899
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
| ++..|+++ .|+.|++||+.+.........|...+.++.+.+.. +|... ||+|.+||+ ++++.+ +...
T Consensus 95 f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~ 164 (388)
T 1xip_A 95 F---HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQN 164 (388)
T ss_dssp E---ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEES
T ss_pred E---CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCC
Confidence 9 34555556 89999999999887666677777778888887653 66666 999999999 587754 3333
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEE------c---cCCCCCCcccccCCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI------N---ATNCSPKVDDELGSSS 414 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl------~---gh~~~~~~~~~~~~~~ 414 (464)
|.+++|||+| ++.|+. ||+|++|+..+++| .++| . +|..
T Consensus 165 -----Vs~v~WSpkG--~~vg~~-----------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~------------ 214 (388)
T 1xip_A 165 -----VTSFDVTNSQ--LAVLLK-----------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY------------ 214 (388)
T ss_dssp -----EEEEEECSSE--EEEEET-----------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS------------
T ss_pred -----ceEEEEcCCc--eEEEEc-----------CCcEEEEcCCCccccccceecCCcccccccCCCe------------
Confidence 8999999999 566776 99999999988998 8888 2 2333
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
.|.+|.|.++++.|++
T Consensus 215 ----------------------~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 215 ----------------------SPLSVTILSPQDFLAV 230 (388)
T ss_dssp ----------------------EEEEEEESSSSEEEEE
T ss_pred ----------------------eEEEEEEecCCeEEEE
Confidence 8999999999999886
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-11 Score=121.64 Aligned_cols=265 Identities=6% Similarity=-0.053 Sum_probs=170.9
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec---cc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE---SL 185 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~---~~ 185 (464)
.+.+.|..+++.+.++..+.. . .++|+|||+.+.++..+.+....+-...++.++|..+++..++.++-... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788899999999999977654 3 79999999999996654322111122379999999999987655432000 11
Q ss_pred cCceEEEEeCCCCcEEEEecC--CCcEEE--EeCCCCeEEEEecCCCEeEE-------EEeCCCceeEEEEEcCC-----
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ--DSIYKV--FDLKNYTMLYSISDKHVQEI-------KIRSSSHVPLKILSIED----- 249 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~--D~tiKl--Wdl~tg~~l~tl~~~~V~~V-------afs~s~d~tIklWdi~t----- 249 (464)
..|..++|| |||+.|..+.. +.++.| +|+++ +.++.......+ -+.-+.|+.+-+-|+++
T Consensus 124 ~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 346789997 99998887764 467888 99987 455531110000 01123455666667776
Q ss_pred CcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEEEcc-------cCCCceEE---EEEcCCC
Q 012410 250 GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSR-------TEFMTPSA---FIFLYEN 315 (464)
Q Consensus 250 G~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~-------gh~~~v~s---v~Fspdg 315 (464)
|+.+.+.. -....... + .+ +++.++..+. +++.+.|+.+++ .+..+. .+...+.. ++|+|||
T Consensus 200 ~~v~~~~t~~i~vg~~P~-~-~~-~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA-Q-AN-YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE-E-ET-TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc-c-cc-cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 54432100 00000011 3 45 3567777666 999999987643 233221 11111222 6899998
Q ss_pred cEEEE-Ee-C-C-------eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEe-cCCCccccccCCCCe
Q 012410 316 QLFLT-FR-N-R-------TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYC-KAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS-~s-D-~-------TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs-~~~~~~~~~~s~Dgt 382 (464)
+.+.. .. + + .+.++|. +++.++++.-... .+.++|+|||++ +++.. . +++
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~va~~~~-----------~~~ 338 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAG-----------TEV 338 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETT-----------TTE
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECCCCCEEEEEccCC-----------CCe
Confidence 76554 33 3 2 5669999 7999998875542 468999999984 45443 3 899
Q ss_pred EEEEeCCCCeEEEEEccCC
Q 012410 383 INVSSILTGKCLAKINATN 401 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~ 401 (464)
|-++|+.|++.++++....
T Consensus 339 VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEESSSCEEEEECCCCS
T ss_pred EEEEECCCCcEEEEEECCC
Confidence 9999999999999998765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-10 Score=109.75 Aligned_cols=283 Identities=10% Similarity=0.034 Sum_probs=193.6
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.++.|.++..++.+.+|| .+|+.+..... +...+.+++..++|...+. + . . +..++ ++|+..-.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~-----t-~------~-l~~~d-~~g~~~~~ 92 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGTIYFG-----S-D------K-VYAIN-PDGTEKWR 92 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTEECCS-----S-C------E-EEEEC-CCGGGGGG
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCcEEEe-----c-C------c-EEEEC-CCCcEEEE
Confidence 456677777788888898 89998877644 5667888888888864433 2 1 2 44445 35554322
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC-------CCceeEEEEEc
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS-------SSHVPLKILSI 247 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi 247 (464)
+.... .. ....++. +|.+ ..++.++.+..+|.+ |+.+.... ...+.++++.+ ..++.|..+|.
T Consensus 93 ~~~~~-~~---~~~~~~~--~~~l-~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 93 FDTKK-AI---VSDFTIF--EDIL-YVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINP 164 (330)
T ss_dssp SCC---------CCEEEE--TTEE-EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECT
T ss_pred EECCC-Cc---ccCceEE--CCEE-EEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECC
Confidence 22111 11 1134443 6654 447778899999988 88776544 23344455543 34578999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEE
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVA 327 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIk 327 (464)
+ |+.+..+......+.++.+.+ ++.+.+++ +.|..+| .+|+.+.........+.++++.++|.+.+...++.|.
T Consensus 165 ~-g~~~~~~~~~~~~~~~~~~d~--~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~ 238 (330)
T 3hxj_A 165 D-GTEKWRFKTNDAITSAASIGK--DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECT--TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEE
T ss_pred C-CCEeEEEecCCCceeeeEEcC--CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEE
Confidence 8 998887774334456665533 47788877 8899999 8888777666555678888899999988877677888
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcc
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 407 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~ 407 (464)
.+|.+|+.+..+...... +.++++.++|.+.++. . +|.|..+|. +|+.+..+.-...
T Consensus 239 ~~~~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v~t-~-----------~ggl~~~d~-~g~~~~~~~~~~~----- 295 (330)
T 3hxj_A 239 AINPDGTEKWRFKTGKRI-----ESSPVIGNTDTIYFGS-Y-----------DGHLYAINP-DGTEKWNFETGSW----- 295 (330)
T ss_dssp EECTTSCEEEEEECSSCC-----CSCCEECTTSCEEEEC-T-----------TCEEEEECT-TSCEEEEEECSSC-----
T ss_pred EECCCCCEeEEeeCCCCc-----cccceEcCCCeEEEec-C-----------CCCEEEECC-CCcEEEEEEcCCc-----
Confidence 888889988877755443 3457777888877653 2 778999995 8998887754332
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.+.+++.++||+ |+-|+.+|.+++-
T Consensus 296 -----------------------------~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 296 -----------------------------IIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp -----------------------------CCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred -----------------------------cccceEEcCCCE-EEEEcCCCeEEEE
Confidence 566788889987 5668899998864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-10 Score=107.42 Aligned_cols=223 Identities=11% Similarity=0.077 Sum_probs=149.4
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
+..+..+. ....+..+.+|+|+|+.|..+. ... ..+..|+. +|+. ..+.. ....+..++|+ ++
T Consensus 34 ~~~~~~l~-~~~~~~egp~~~~~g~~l~~~d--~~~-------~~i~~~~~-~g~~----~~~~~-~~~~~~gl~~d-~d 96 (305)
T 3dr2_A 34 DARLLTLY-DQATWSEGPAWWEAQRTLVWSD--LVG-------RRVLGWRE-DGTV----DVLLD-ATAFTNGNAVD-AQ 96 (305)
T ss_dssp TCCCEEEE-CCCSSEEEEEEEGGGTEEEEEE--TTT-------TEEEEEET-TSCE----EEEEE-SCSCEEEEEEC-TT
T ss_pred CCceEEEe-cCCcCccCCeEeCCCCEEEEEE--CCC-------CEEEEEeC-CCCE----EEEeC-CCCccceeeEC-CC
Confidence 33444442 2456788999999999666533 223 46777774 5553 22332 23556789997 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEeCCC-------------------------ceeEEEEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIRSSS-------------------------HVPLKILS 246 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs~s~-------------------------d~tIklWd 246 (464)
|+++++...++.|.+||.. |+...... .+.+.++++.|+. ...|..+|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9988877777889999986 76432211 1346678886531 24577777
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------CeEEEEECCCCcEE--EEc-ccCCCceEEEEEcCCCcE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELM--EVS-RTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~tIkIWDv~tg~~l--~~l-~gh~~~v~sv~Fspdgql 317 (464)
.++|+..... + ......++|+|+ +..|.++..+ +.|.+||+..+.+. +.+ ......+..+++.++|++
T Consensus 176 ~~~g~~~~~~-~-~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA-D-LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE-E-ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe-c-CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 7778765543 2 244578999884 5556666543 79999998766521 121 112345678899999997
Q ss_pred EEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 318 FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 318 laS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.++..+ .|.+||.+|+++..+..+. . +.+++|+||++.|..++.
T Consensus 253 wv~~~~-gv~~~~~~g~~~~~~~~~~-~-----~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 253 WSSSGT-GVCVFDSDGQLLGHIPTPG-T-----ASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECCSS-EEEEECTTSCEEEEEECSS-C-----CCEEEECTTSCEEEEEET
T ss_pred EEecCC-cEEEECCCCCEEEEEECCC-c-----eeEEEEeCCCCEEEEEcC
Confidence 776645 4999999999999887665 2 678999999998877653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-10 Score=118.63 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=176.9
Q ss_pred eCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCC
Q 012410 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDS 208 (464)
Q Consensus 139 ~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~ 208 (464)
|++..+.++. ..+ .++. .++.+-|..+++..+.++ .+ ..| .++|| |||+.|.-+. .++
T Consensus 82 ~~~~~vyV~n--~~~--~~~~-~~VsVID~~t~~vv~~I~---vG--~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQD--PAH--FAAI-TQQFVIDGSTGRILGMTD---GG--FLP-HPVAA-EDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEE--CTT--TCSS-EEEEEEETTTTEEEEEEE---EC--SSC-EEEEC-TTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEC--CCc--CCCC-CeEEEEECCCCEEEEEEE---CC--CCC-ceEEC-CCCCEEEEEeccccccccCCCCC
Confidence 4566655533 221 1223 578888988888764433 22 457 89997 8999877665 367
Q ss_pred cEEEEeCCCCeEEEEec-C--------CCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 209 IYKVFDLKNYTMLYSIS-D--------KHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~--------~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
+|-++|..+++.+.++. . ..-..++|+|+ .+.+|-+.|+++++.+.++.-. . .+...
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g--~~~~~ 225 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--D--CYHIF 225 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S--EEEEE
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--C--ceeec
Confidence 99999999999998775 2 23457788874 2568999999999999988731 1 12333
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCce-EEEEEcCCCcEEEEEe-CCeEEEEeCCCceEE---Eec
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMTP-SAFIFLYENQLFLTFR-NRTVAVWNFRGELVT---SFE 340 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~v-~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~---tl~ 340 (464)
|..+..+++-+.|+++-+.|..+++...+ +.-....+ ..+.|+|++..++-.+ .++|-+-|..+.-+. +++
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~ 305 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE 305 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence 42223444556788888888866665532 11111111 1356899988877777 889999998543322 211
Q ss_pred ---cC---CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 341 ---DH---LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 341 ---gH---~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
.. ..|.+. ....++|+|||+.|........+.. -...+++|-+.|+.|++.+++|..-.
T Consensus 306 ~~~~~~i~~g~~p~-g~~~va~s~dg~rlyVa~~~~~~gt-hk~~s~~VsVID~~T~kvv~~I~vg~------------- 370 (426)
T 3c75_H 306 ALTEAERADDWRPG-GWQQTAYHRQSDRIYLLVDQRDEWK-HKAASRFVVVLNAETGERINKIELGH------------- 370 (426)
T ss_dssp SSCTTTGGGTEEEC-SSSCEEEEGGGTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEEE-------------
T ss_pred eccccccccccccC-CceeeEEcCCCCEEEEEeccccccc-ccCCCCEEEEEECCCCeEEEEEECCC-------------
Confidence 00 011111 0234899999997766532000000 00014689999999999999996432
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd~ 464 (464)
..++++|+|||+ .||+.+ .+++|-++|.
T Consensus 371 ----------------------~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 371 ----------------------EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp ----------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred ----------------------CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 467899999999 999999 5999999873
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-09 Score=117.77 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=152.7
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC----CEeE-----------EEEeCC-----CceeEEEEEcCCC
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQE-----------IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~----~V~~-----------Vafs~s-----~d~tIklWdi~tG 250 (464)
++.. +| .|..++.|+.+..+|.+||+.+-+.... .... |-+..+ .++.|..||.+||
T Consensus 117 ~~~~--~g-~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVW--KG-KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEE--CC-EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 4553 45 5566788999999999999998544321 1111 111111 3688999999999
Q ss_pred cEEEEEeeCC------------------------------cce-eeEEEEccCCCeEEEEeCCCe---------------
Q 012410 251 TVLKVFYHLL------------------------------HRN-KKVDFIEQFNEKLLVKQENEN--------------- 284 (464)
Q Consensus 251 ~~l~tl~~~~------------------------------~~~-~~V~F~~~~~~~lla~s~D~t--------------- 284 (464)
+++.++.... ..+ ..++|.|. ++.+.++..+++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9998876210 011 25778774 567777776653
Q ss_pred ----EEEEECCCCcEEEEccc--CCC-------ceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEec------
Q 012410 285 ----LQILDVRNAELMEVSRT--EFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFE------ 340 (464)
Q Consensus 285 ----IkIWDv~tg~~l~~l~g--h~~-------~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~------ 340 (464)
|..||+.||+.+-.++. |.. .+.......+|+ .++.++ |+.+.++|. +|+++...+
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 99999999999875543 321 122222334776 788888 999999999 799984321
Q ss_pred ----------------------------------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCc--------------
Q 012410 341 ----------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPE-------------- 372 (464)
Q Consensus 341 ----------------------------------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~-------------- 372 (464)
|..+| ..++|+|+..++...+...+.
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w------~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~ 426 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDW------QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPF 426 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCS------SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCC------CcceECCCCCEEEEeccccceeeeecccccccccc
Confidence 12223 248999999999876431000
Q ss_pred -cccccC-------------------CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 373 -DQWMEG-------------------SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 373 -~~~~~s-------------------~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.....+ .+|+|+.||+.||+.+.+++.+..
T Consensus 427 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------------------------------ 476 (689)
T 1yiq_A 427 KSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------------------------------ 476 (689)
T ss_dssp TTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------------------------------
T ss_pred ccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------------------------------
Confidence 000011 158999999999999999876652
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+++-.++..|..++.|+.||.|+.||
T Consensus 477 -----~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 477 -----FNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp -----CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred -----ccCccceECCCEEEEECCCCcEEEEE
Confidence 23335667889999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-09 Score=115.81 Aligned_cols=236 Identities=11% Similarity=0.099 Sum_probs=157.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-------CEe-------E-EEEeCC-----CceeEEEEEcCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------HVQ-------E-IKIRSS-----SHVPLKILSIED 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-------~V~-------~-Vafs~s-----~d~tIklWdi~t 249 (464)
.+++. ++ .|..++.|+.+..+|.+||+.+-++... .+. . |-+... .++.|..+|.+|
T Consensus 123 ~~a~~--~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 123 GVALW--KG-KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp CCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred CceEE--CC-EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence 45563 45 5556788999999999999998665421 111 1 111111 268999999999
Q ss_pred CcEEEEEeeCCcc-------------------------------e-eeEEEEccCCCeEEEEeCCC--------------
Q 012410 250 GTVLKVFYHLLHR-------------------------------N-KKVDFIEQFNEKLLVKQENE-------------- 283 (464)
Q Consensus 250 G~~l~tl~~~~~~-------------------------------~-~~V~F~~~~~~~lla~s~D~-------------- 283 (464)
|+.+.++...... + ..++|.|. ++.+.++..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCC
Confidence 9999888631111 0 24677774 56777766553
Q ss_pred -----eEEEEECCCCcEEEEccc--CC-------CceEEEEEcCCC---cEEEEEe-CCeEEEEeC-CCceEEEeccC-C
Q 012410 284 -----NLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYEN---QLFLTFR-NRTVAVWNF-RGELVTSFEDH-L 343 (464)
Q Consensus 284 -----tIkIWDv~tg~~l~~l~g--h~-------~~v~sv~Fspdg---qllaS~s-D~TIklWd~-~Ge~l~tl~gH-~ 343 (464)
+|..+|..||+.+-.++. |. ..+.-+.+..|| ..++.++ ++.|.++|. +|+++..++-. .
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 599999999998865442 32 234444455688 6888888 999999999 79998766411 1
Q ss_pred CCcC----CCC-e------------------------eEEEECCCCCEEEEEecCCCcc---------------------
Q 012410 344 LWHP----DCN-T------------------------NNIYITSDQDLIISYCKAEPED--------------------- 373 (464)
Q Consensus 344 ~~~~----~~~-v------------------------~svafSpDg~~LaSgs~~~~~~--------------------- 373 (464)
.|.. .|. + ..++|+|++.++...+..-+.+
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 1100 000 0 2578999999998765310000
Q ss_pred ccc-----------cCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 374 QWM-----------EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 374 ~~~-----------~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
+.. ....++|..||+.||+.+.+++... .+++..
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~g~ 483 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-----------------------------------PWNGGT 483 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-----------------------------------CCcCcc
Confidence 000 0124899999999999998886432 344556
Q ss_pred EcCCCCEEEEeeCCCcEEeccC
Q 012410 443 YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd~ 464 (464)
++++|..++.|+.||.|++||.
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEET
T ss_pred eEeCCCEEEEECCCCcEEEEEC
Confidence 7788999999999999999983
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-12 Score=129.46 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=76.7
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC-ceE-EEEEcCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPS-AFIFLYE 314 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~-~v~-sv~Fspd 314 (464)
+.|+.|..||.+||+++.+++. ..+.+..+... +..+++++.|++|..||..+|+.+.....+.. .+. +.+++.+
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~ 92 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSD 92 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC---
T ss_pred cCCCEEEEEECCCCCEEEEecC--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecC
Confidence 5678999999999999998875 44444444442 33445567999999999999998776654421 111 1112234
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+ .+++++ |++|..||. +|+++.++..|.. +.++|++..|+.++. |++|..||..||+
T Consensus 93 ~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---------~~~~p~~~~v~~~~~-----------dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 93 G-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---------DSLSPSTSLLYLGRT-----------EYTITMYDTKTRE 151 (369)
T ss_dssp ---CCCCEEEEEEEEECCC-------------------------------EEEEEE-----------EEEEECCCSSSSS
T ss_pred C-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---------ccccccCCEEEEEec-----------CCEEEEEECCCCC
Confidence 4 556666 999999999 6999988876641 356789999999886 8999999999999
Q ss_pred EEEEEcc
Q 012410 393 CLAKINA 399 (464)
Q Consensus 393 cl~tl~g 399 (464)
.+.++..
T Consensus 152 ~~W~~~~ 158 (369)
T 2hz6_A 152 LRWNATY 158 (369)
T ss_dssp CCCEEEE
T ss_pred EEEeEec
Confidence 8877653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=113.32 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=123.0
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-----CCcc-cceeeccccCceEEEEeCCCCcEEEEe
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-----DSGF-ALFESESLKWPGFVEFDDVNGKVLTYS 204 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-----~~~~-~l~~~~~~~~~~~VaFs~pdGk~LaSg 204 (464)
-+..++.++....+++++ .+ .+.+|++...+- ...+ +.....+-+ +..|+| ||++|+.+
T Consensus 39 ~~nlLais~~~gll~a~~----~~-------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAAS----GS-------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTTTEEEEEE----TT-------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE
T ss_pred cccEEEEcCCCCEEEEeC----CC-------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE
Confidence 478899999999888844 33 466677643330 0001 112222334 668999 78999988
Q ss_pred cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 205 AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
.++.|++||+.+-....+++ .+ ...+..+.+.+ ..+++...||+
T Consensus 104 -~~~~l~v~dv~sl~~~~~~~-----------------------------~~---~~~v~~i~~~~---p~~av~~~dG~ 147 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFRTVT-----------------------------SF---EKPVFQLKNVN---NTLVILNSVND 147 (388)
T ss_dssp -ESSEEEEEESSSTTCEEEEE-----------------------------EC---SSCEEEEEECS---SEEEEEETTSE
T ss_pred -cCCcEEEEEchhhhccCccc-----------------------------ee---ecceeeEEecC---CCEEEEECCCC
Confidence 88999999987644322211 00 01223333433 23777889999
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce--EEEe------c---cCCCCcCCCCe
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSF------E---DHLLWHPDCNT 351 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~--l~tl------~---gH~~~~~~~~v 351 (464)
|.+||+.++++.. +...|.+++|||+| ++.+. |++|++|+.+ +++ .+++ + +|... |
T Consensus 148 L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-----V 216 (388)
T 1xip_A 148 LSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-----P 216 (388)
T ss_dssp EEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-----E
T ss_pred EEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee-----E
Confidence 9999999998865 34579999999999 45566 9999999995 555 7788 4 46554 8
Q ss_pred eEEEECCCCCEEEEEecCC
Q 012410 352 NNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~ 370 (464)
.+|.|.+++++|+++...+
T Consensus 217 ~sI~wl~~~~flv~y~~~~ 235 (388)
T 1xip_A 217 LSVTILSPQDFLAVFGNVI 235 (388)
T ss_dssp EEEEESSSSEEEEEEECCC
T ss_pred EEEEEecCCeEEEEEcCCC
Confidence 9999999999999998643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-08 Score=106.49 Aligned_cols=267 Identities=13% Similarity=0.178 Sum_probs=169.4
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-........ .-+++++. +..+++ ++.+ ..+.-.
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v----~~~d------g~l~al 132 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYV----GTLD------GRLIAL 132 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEE----ECTT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEE----EcCC------CEEEEE
Confidence 4778888888999999999999999887543211 11233332 344554 2333 466777
Q ss_pred EeccCCCCCcccceeeccc------cCceEEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEEEecC---C-----
Q 012410 167 YIRRGKPDSGFALFESESL------KWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~------~~~~~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~tl~~---~----- 227 (464)
|..+|+. +|+.... ....+... .+|++++..+. ++.|..+|.+||+++-++.. .
T Consensus 133 D~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 133 DAKTGKA-----IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp ETTTCCE-----EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 8888886 3332210 00011112 16766664432 68999999999999866531 0
Q ss_pred ------------------------CE-eEEEEeC--------CCce-------------------eEEEEEcCCCcEEEE
Q 012410 228 ------------------------HV-QEIKIRS--------SSHV-------------------PLKILSIEDGTVLKV 255 (464)
Q Consensus 228 ------------------------~V-~~Vafs~--------s~d~-------------------tIklWdi~tG~~l~t 255 (464)
.+ ..+++.| ..+. .|.-+|.+||+.+..
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 01 1245543 1222 499999999999998
Q ss_pred EeeCCcceee-------E--EEEccCCCe----EEEEeCCCeEEEEECCCCcEEEEcccCC-----------Cce-----
Q 012410 256 FYHLLHRNKK-------V--DFIEQFNEK----LLVKQENENLQILDVRNAELMEVSRTEF-----------MTP----- 306 (464)
Q Consensus 256 l~~~~~~~~~-------V--~F~~~~~~~----lla~s~D~tIkIWDv~tg~~l~~l~gh~-----------~~v----- 306 (464)
++...|..+. + ++.. +++ +++++.|+.+.++|..||+++....-.. ..+
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 8732122111 1 1111 243 5667899999999999999883221110 000
Q ss_pred --------------------EEEEEcCCCcEEEE------------------------------------Ee-CCeEEEE
Q 012410 307 --------------------SAFIFLYENQLFLT------------------------------------FR-NRTVAVW 329 (464)
Q Consensus 307 --------------------~sv~FspdgqllaS------------------------------------~s-D~TIklW 329 (464)
..++|+|+..++.. .. +++|..|
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~ 443 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAW 443 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEE
Confidence 12578888766542 12 4889999
Q ss_pred eC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 330 NF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|. +|+.+-+.+.+..+ +...++..|.+++.++. |+.++.||..||+.+..++...
T Consensus 444 D~~tG~~~W~~~~~~~~------~~~~~~t~gg~vf~g~~-----------dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 444 DPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp ETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred eCCCCcEEEEccCCCCC------cCceeEeCCCEEEEECC-----------cccchhhhhhcChhheEecCCC
Confidence 98 79998877755443 33456667888888876 9999999999999999987654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-09 Score=100.48 Aligned_cols=224 Identities=14% Similarity=0.048 Sum_probs=144.6
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEE
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKl 212 (464)
.+.....+|...+. +.+ ..+..++ .+|+..-.+.+-. ..+.++.++ ++|.+.+ ++.+ +..
T Consensus 23 ~~~~~d~~g~l~v~-----t~~------~~l~~~d-~~g~~~~~~~~~~----~~~~~~~~~-~~g~l~v-~t~~--l~~ 82 (330)
T 3hxj_A 23 SSPILAKNGTIYLG-----SSN------KNLYAIN-TDGSVKWFFKSGE----IIECRPSIG-KDGTIYF-GSDK--VYA 82 (330)
T ss_dssp CCCEECTTSCEECS-----STT------TTTEEEC-TTSCEEESSCGGG----EEEECCEET-TTTEECC-SSCE--EEE
T ss_pred cCceEccCCeEEEE-----cCC------CEEEEEC-CCCcEEEEEecCC----CcccceEEe-cCCcEEE-ecCc--EEE
Confidence 34455566654432 323 3566667 7777532222111 112356674 6887665 4444 777
Q ss_pred EeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 213 FDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 213 Wdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
+|. +|+.+..+. .......++. ...++.|..+|.+ |+.+..+......+.++...+ ++.+.+++.++.
T Consensus 83 ~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~g~l~vgt~~~~ 158 (330)
T 3hxj_A 83 INP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE--DGTIYVGSNDNY 158 (330)
T ss_dssp ECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT--TSCEEEECTTSE
T ss_pred ECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC--CCEEEEEcCCCE
Confidence 885 666543222 1111222222 1356788999998 988877764333445555433 478999999999
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~La 364 (464)
|..+|.. |+.+.....+...+.++++.++|.++++. +.|..+|.+|+.+..+..+... +.++++.+||.+.+
T Consensus 159 l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 159 LYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWT-----VTRPAISEDGTIYV 230 (330)
T ss_dssp EEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCC-----CSCCEECTTSCEEE
T ss_pred EEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcc-----eeceEECCCCeEEE
Confidence 9999988 88876665555567777788899988877 8899999779888777755443 67889999998887
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
... ++.|..+| .+|+.+..+....
T Consensus 231 ~t~------------~~gl~~~~-~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 231 TSL------------DGHLYAIN-PDGTEKWRFKTGK 254 (330)
T ss_dssp EET------------TTEEEEEC-TTSCEEEEEECSS
T ss_pred EcC------------CCeEEEEC-CCCCEeEEeeCCC
Confidence 642 67788888 5888887775543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-07 Score=100.01 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=165.2
Q ss_pred ccceeehhcc-CCeEEeeec-ccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 97 ag~~l~~l~~-~g~~~~~~~-~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.++.|.+.+. ++.+.++|. .+|+.+-........ ..+++++ .+..+.+. ..+ ..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~d------g~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKK----QAN------GHLL 128 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTT------SEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEE----eCC------CEEE
Confidence 4677777777 899999998 899999877543221 1123343 24455552 223 4566
Q ss_pred EEEeccCCCCCcccceeecccc----C-c-eEEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEEEecC-CC----
Q 012410 165 IEYIRRGKPDSGFALFESESLK----W-P-GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD-KH---- 228 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~----~-~-~~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~tl~~-~~---- 228 (464)
-.|.++|+. +|+...-. + + .+... .+|++++.++. |+.|..+|.+||+.+-++.. ..
T Consensus 129 alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 129 ALDAKTGKI-----NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp EEETTTCCE-----EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEECCCCCE-----EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 667788886 33321111 0 0 01112 16777665543 89999999999999865541 11
Q ss_pred ----------------------------------Ee-EEEEeC--------C------------Cc----eeEEEEEcCC
Q 012410 229 ----------------------------------VQ-EIKIRS--------S------------SH----VPLKILSIED 249 (464)
Q Consensus 229 ----------------------------------V~-~Vafs~--------s------------~d----~tIklWdi~t 249 (464)
+| .+++.+ . .| ..|.-+|.+|
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 00 122221 1 12 2599999999
Q ss_pred CcEEEEEeeCCcc------eeeEEEEcc-CCC---e-EEEEeCCCeEEEEECCCCcEEEEcccCC------------Cce
Q 012410 250 GTVLKVFYHLLHR------NKKVDFIEQ-FNE---K-LLVKQENENLQILDVRNAELMEVSRTEF------------MTP 306 (464)
Q Consensus 250 G~~l~tl~~~~~~------~~~V~F~~~-~~~---~-lla~s~D~tIkIWDv~tg~~l~~l~gh~------------~~v 306 (464)
|+.+..++...|. ..+...... .++ + ++.++.++.+.++|..+|+.+-...-.. ..+
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 9999988732121 122222211 024 3 3457789999999999999876432110 011
Q ss_pred ---------------------------EEEEEcCCCcEEEEEe-------------------------------------
Q 012410 307 ---------------------------SAFIFLYENQLFLTFR------------------------------------- 322 (464)
Q Consensus 307 ---------------------------~sv~FspdgqllaS~s------------------------------------- 322 (464)
.+++|+|++.+|....
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 2357888877765542
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
++.|..||. +|+.+-+++.... +++..+...+.++..++. |+.|..+|..||+++.+++..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcC-----------CCeEEEEECCCCCEEEEEeCC
Confidence 478999998 7999887764432 223333445566666765 999999999999999998754
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-07 Score=88.77 Aligned_cols=248 Identities=9% Similarity=0.055 Sum_probs=152.7
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..++.|.+...+|.+.++|..+|+.+-..... .....+.... +| .+.+ ++.+ ..+...|.++|+..
T Consensus 101 ~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~~-~~-~v~v----~~~~------g~l~~~d~~tG~~~- 166 (376)
T 3q7m_A 101 VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSRPVVS-DG-LVLI----HTSN------GQLQALNEADGAVK- 166 (376)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSCCEEE-TT-EEEE----ECTT------SEEEEEETTTCCEE-
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcCCEEE-CC-EEEE----EcCC------CeEEEEECCCCcEE-
Confidence 34778888888999999999999998777543 2222222222 34 4444 2333 46777788888863
Q ss_pred cccceeeccccC------ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCC------------E-eE-----
Q 012410 176 GFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH------------V-QE----- 231 (464)
Q Consensus 176 ~~~l~~~~~~~~------~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~------------V-~~----- 231 (464)
|....-.. ....... +| .|..++.++.+..+|.++|+.+....... + ..
T Consensus 167 ----W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (376)
T 3q7m_A 167 ----WTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN 239 (376)
T ss_dssp ----EEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred ----EEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence 33211000 0123332 45 45557889999999999999986554110 0 00
Q ss_pred -EEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEE
Q 012410 232 -IKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAF 309 (464)
Q Consensus 232 -Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv 309 (464)
..+-.+.++.|..+|.++|+.+..... .....+.. .++.+.++..++.|..+|..+|+.+-.... ....+.+.
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence 011124577899999999999987652 22233332 358899999999999999999998765441 11222222
Q ss_pred EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 310 IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+. .++.+++...++.|.++|. +|+.+..++-....+. ....+ .+| .|..++. ||+|..+|
T Consensus 315 ~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~----~~~~~-~~~-~l~v~~~-----------~G~l~~~~ 375 (376)
T 3q7m_A 315 VL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ----TEPVA-ADG-KLLIQAK-----------DGTVYSIT 375 (376)
T ss_dssp EE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC----SCCEE-ETT-EEEEEBT-----------TSCEEEEE
T ss_pred EE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce----eCCEE-ECC-EEEEEeC-----------CCEEEEEe
Confidence 22 3555554444999999998 7999887765333211 11222 244 4445554 89998886
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.9e-09 Score=105.01 Aligned_cols=247 Identities=9% Similarity=0.064 Sum_probs=151.7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCCcEEEEeCCCCeEEEEec-C----
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D---- 226 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~tiKlWdl~tg~~l~tl~-~---- 226 (464)
++.+-|..+++..++++ .+ ..| .++|| |||+.|..+. .|++|.+||+.+++.+.++. .
T Consensus 47 ~vsvID~~t~~v~~~i~---vG--~~P-~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL---GA--FLS-LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEE---EC--TTC-EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEe---CC--CCC-ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 66677888888764433 22 346 79997 8999888775 37899999999999999875 2
Q ss_pred ----CCEeEEEEeCCC----------ceeEEE--EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC
Q 012410 227 ----KHVQEIKIRSSS----------HVPLKI--LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 290 (464)
Q Consensus 227 ----~~V~~Vafs~s~----------d~tIkl--Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv 290 (464)
..-..++|+|+. ...|.+ +|+++ ++++.-. .. +.+.|.....+++.+.|+.+-+-|+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~--~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC--FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC--CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc--eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 245688998852 345777 88877 5555411 11 1123422233344568888888888
Q ss_pred CC-----CcEEEE----cccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCc---eEEEecc------CCCCcCCCCee
Q 012410 291 RN-----AELMEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE---LVTSFED------HLLWHPDCNTN 352 (464)
Q Consensus 291 ~t-----g~~l~~----l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge---~l~tl~g------H~~~~~~~~v~ 352 (464)
.+ ++.+.+ ..-. ..+. ++.+++.++.... ++|.+-|+.+. .+.++.- ...|.+.. ..
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg-~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~ 267 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCS-SQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG-FQ 267 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBC-SCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-SS
T ss_pred ccccccCCeEEEEeeeeeeCC-CCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc-ce
Confidence 87 543211 1111 1233 3555555555555 88888898432 3332211 11221110 11
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.++|+|||+.|.-+....+ .......++ +.++|+.|++.+++|....
T Consensus 268 ~v~~s~dg~~lyV~~~~~~-~~~~~~~~~-~~ViD~~t~~vv~~i~vg~------------------------------- 314 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHS-RSCLAAAEN-TSSVTASVGQTSGPISNGH------------------------------- 314 (368)
T ss_dssp CEEEETTTTEEEEEEEECS-SCTTSCEEE-EEEEESSSCCEEECCEEEE-------------------------------
T ss_pred eeEEcCCCCEEEEEecccc-CcccccCCC-EEEEECCCCeEEEEEECCC-------------------------------
Confidence 2789999998875421000 000000134 4499999999999986553
Q ss_pred ccccCEEEEEEcCCCCE-EEEee-CCCcEEeccC
Q 012410 433 EALEDITSLFYDEERNE-IYTGN-RHGLVHVWSN 464 (464)
Q Consensus 433 ~~l~~V~slafspDg~~-LaSgs-~DgtVrlWd~ 464 (464)
..+.++|+|||+. +++.. .+++|.++|.
T Consensus 315 ----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 315 ----DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ----EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ----CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 5678999999985 55666 5999999984
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-08 Score=107.28 Aligned_cols=253 Identities=10% Similarity=0.098 Sum_probs=163.6
Q ss_pred ccceeehhccCC-eEEeeecccccEeeEeecCCCceEEEEEE-e-eCCCEEEEEEeecC---CCCcccce-----eeEEE
Q 012410 97 ARDIVFALAHSG-VCAAFSRETNRRICFLNVSPDEVIRSLFY-N-KNNDSLITVSVYAS---DNFSSLKC-----RSTKI 165 (464)
Q Consensus 97 ag~~l~~l~~~g-~~~~~~~~~g~~l~~ln~~~~~~i~Sv~f-s-~~g~~l~svSa~~s---ddfs~L~~-----~ti~l 165 (464)
-|..|+..+.++ .++.-|..+.+....+......-...+++ + |+++++..++.|.- .|-..|.. .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 567777766544 68888889999888554433344788888 5 99999988543321 01111111 56777
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---------------cEEEEeCCCCeEEEEec-CCCE
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---------------IYKVFDLKNYTMLYSIS-DKHV 229 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---------------tiKlWdl~tg~~l~tl~-~~~V 229 (464)
.|.++.+. .++-.+-+.|..+++| |||+.+.+.+.+. .|.|.|.+..+. .+. ++..
T Consensus 180 ID~~t~~v-----~~qI~Vgg~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKWEV-----AWQVLVSGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQ 251 (595)
T ss_dssp EETTTTEE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSE
T ss_pred EECCCCeE-----EEEEEeCCCccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCee
Confidence 77777665 3443222457789997 8999999888764 344554332211 011 1111
Q ss_pred eEEEEeCCCceeEEEEEcCC--CcE-EEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCc-----------
Q 012410 230 QEIKIRSSSHVPLKILSIED--GTV-LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE----------- 294 (464)
Q Consensus 230 ~~Vafs~s~d~tIklWdi~t--G~~-l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~----------- 294 (464)
+ + ..|.+.|..+ |+. +.++.-. ..-..|+|+| ++.++++++ .+.+|-++|+.+.+
T Consensus 252 ~-i-------~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 252 E-L-------NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp E-E-------TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred E-E-------CcEEEEeCcccCCceeEEEEecC-CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 1 1 3599999998 766 6666521 2346899999 466677765 88999999999763
Q ss_pred -EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C----------CceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 295 -LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----------GELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 295 -~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~----------Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
......-- ..|+-++|+|||...++.- |++|-+||+ . .+.+.++.-|...-..+.-..+.++|||+
T Consensus 322 ~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 322 AVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 23333222 4699999999996666666 999999998 4 46788888765420000012346799999
Q ss_pred EEEEEec
Q 012410 362 LIISYCK 368 (464)
Q Consensus 362 ~LaSgs~ 368 (464)
+|++.++
T Consensus 401 ~l~~~Nk 407 (595)
T 1fwx_A 401 WLVCLSK 407 (595)
T ss_dssp EEEEEES
T ss_pred EEEEcCC
Confidence 9999997
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.3e-07 Score=87.63 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=135.8
Q ss_pred ceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec-CC--CEeEEEEeC-------CCceeEEEEEcCCCcEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-DK--HVQEIKIRS-------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~-~~--~V~~Vafs~-------s~d~tIklWdi~tG~~l~t 255 (464)
|..++|+ |||.+.++.+. +++|.+.|+++|+.+.++. .. ....+++.. -.+..|-++|.+|++++.+
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 4479997 78877776654 6899999999999998875 22 334566654 2667899999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-----CCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-----~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+......-+.++ + +++++.++..+++|.++|..+.+.+..+.-. ...++.+.|. ||+++++.. +++|.+=
T Consensus 102 i~~g~~~g~glt--~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQMKDGWGLA--T-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EECCSSSCCEEE--E-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCCCCeEEEE--E-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 973211114444 4 5678888777899999999999887755421 1247788888 899998887 8899999
Q ss_pred eC-CCceEEEeccCC--------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 330 NF-RGELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~--------~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|. +|+.+.++.-.. ..-.....+.|+|+||++.|...++ ...+|..-++.+
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk----------~~~~v~~i~l~~ 237 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK----------LWPKLFEIKLHL 237 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET----------TCSEEEEEEEEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC----------CCCeEEEEEEec
Confidence 99 799999886210 0000112589999999988777765 267777666543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-06 Score=79.55 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeCC---------CceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRSS---------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l~ 254 (464)
.+|..++|++.++.+..+....+.|.++|+.++.....+.. .....|++.|. ....|.+++.. |+..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEE
Confidence 56779999833566666777788999999976654444432 56889999873 23567888875 43333
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEeC---CCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCC-cEEEEEe-CCeEE
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVS-RTEFMTPSAFIFLYEN-QLFLTFR-NRTVA 327 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s~---D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdg-qllaS~s-D~TIk 327 (464)
++. .....-..+++.|. ++.|.++.. .+.|..+++. |+..+++ ......+..++++|++ .++++-. .++|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 332 22234478999883 577776653 4788888865 4433333 2344679999999975 5666666 88999
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
..|.+|.-+..+.... .. -..+++ |+..|.-+.. ..+.|...|..+|+.++++...
T Consensus 193 ~~~~~g~~~~~~~~~~-~~----P~gi~~--d~~~lyva~~----------~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGL-QY----PFAVTS--YGKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEETTEEEEEEEEECC-CS----EEEEEE--ETTEEEEEET----------TTTEEEEEETTTTEEEEEECCS
T ss_pred EEecCCCceEEEecCC-CC----ceEEEE--eCCEEEEEEC----------CCCeEEEEeCCCCCceEEEccc
Confidence 9999765444332221 22 245665 4455544432 2689999999999999999643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-07 Score=96.11 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=165.7
Q ss_pred ccceeehhcc-CCeEEeeec-ccccEeeEeecCCC----------ceEEEEEEeeCCCE----EEEEEeecCCCCcccce
Q 012410 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPD----------EVIRSLFYNKNNDS----LITVSVYASDNFSSLKC 160 (464)
Q Consensus 97 ag~~l~~l~~-~g~~~~~~~-~~g~~l~~ln~~~~----------~~i~Sv~fs~~g~~----l~svSa~~sddfs~L~~ 160 (464)
.++.|.+.+. ++.+.++|. .+|+.+-....... ...+.++++|.+.. +++. +.+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~----t~d------ 130 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT----QLD------ 130 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE----CTT------
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE----cCC------
Confidence 3677777777 889999998 89999987754322 12356677654444 5552 223
Q ss_pred eeEEEEEeccCCCCCcccceeecccc----C--ceEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEecC-CC
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLK----W--PGFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD-KH 228 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~----~--~~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~-~~ 228 (464)
..+.-.|.++|+. +|+...-. + ..+-.. .+|++++.++ .|+.|.-+|.+||+++-.+.. ..
T Consensus 131 g~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 131 GNVAALNAETGET-----VWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp SEEEEEETTTCCE-----EEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CEEEEEECCCCCE-----EEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 3455567778886 33321100 0 011122 2677666443 489999999999999865541 11
Q ss_pred --------------------------------------Ee-EEE--------EeCCC----------------ceeEEEE
Q 012410 229 --------------------------------------VQ-EIK--------IRSSS----------------HVPLKIL 245 (464)
Q Consensus 229 --------------------------------------V~-~Va--------fs~s~----------------d~tIklW 245 (464)
+| ..+ |-+.. ...|.-+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 11 111 21111 2479999
Q ss_pred EcCCCcEEEEEeeCCccee------e-EEEE-c-cCCC--eEEE-EeCCCeEEEEECCCCcEEEEcccC-----------
Q 012410 246 SIEDGTVLKVFYHLLHRNK------K-VDFI-E-QFNE--KLLV-KQENENLQILDVRNAELMEVSRTE----------- 302 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~------~-V~F~-~-~~~~--~lla-~s~D~tIkIWDv~tg~~l~~l~gh----------- 302 (464)
|.+||+.+-.++...|..+ + +-+. + .++. .+++ ++.++.+.+.|..||+.+-...-.
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 9999999998884323221 1 1111 1 1232 4444 679999999999999988543210
Q ss_pred -CCce---------------------------EEEEEcCCCcEEEEE---------------------------------
Q 012410 303 -FMTP---------------------------SAFIFLYENQLFLTF--------------------------------- 321 (464)
Q Consensus 303 -~~~v---------------------------~sv~FspdgqllaS~--------------------------------- 321 (464)
...+ .+.+|+|+.+++...
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0000 245678887776542
Q ss_pred -------eCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 322 -------RNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 322 -------sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.++.|..||. +|+.+-+.+-... +++-.++..|.+++.++. |+.++.+|..||+.
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~-----------dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDL 506 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECC-----------CCeEEEEECCCCCE
Confidence 1368999999 7998776642211 122223445677777775 99999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
|.+++-..
T Consensus 507 lW~~~l~~ 514 (599)
T 1w6s_A 507 LWKFKIPS 514 (599)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99986543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=9.9e-07 Score=86.69 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=125.7
Q ss_pred EeEEEEeCC----------CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEE
Q 012410 229 VQEIKIRSS----------SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELM 296 (464)
Q Consensus 229 V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l 296 (464)
.+.++|+|+ .+..|...|++||+.+.++.- .....-.+++. ++++.+.. .++++-++|..+++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEE
Confidence 456666651 357899999999999998862 11122344443 46777765 8899999999999999
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
.++...... ...++|||+.|..+. +++|.+.|. +.+.+.++.--....+--..|.+.|. ||.+.+....
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~------ 170 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ------ 170 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC------
Confidence 887532112 234677887666666 889999999 68888877622110010016788888 8876665433
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+++|-+-|..||+.++++.-....+ .. .............|||+|||+.|+.++
T Consensus 171 -----~~~V~vID~~tg~V~~~I~~~g~~~---~~------------------~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 171 -----TDCIARISAKDGTLLGWILLPNLRK---KL------------------IDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp -----SSEEEEEETTTCCEEEEEECHHHHH---HH------------------HHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred -----CCeEEEEECCCCcEEEEEECCCccc---cc------------------ccccccccCceEEEEEcCCCCEEEEEC
Confidence 7899999999999999995321000 00 000000012567899999998766554
Q ss_pred -CCCcEE
Q 012410 455 -RHGLVH 460 (464)
Q Consensus 455 -~DgtVr 460 (464)
...+|.
T Consensus 225 k~~~~v~ 231 (266)
T 2iwa_A 225 KLWPKLF 231 (266)
T ss_dssp TTCSEEE
T ss_pred CCCCeEE
Confidence 555544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-07 Score=97.15 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=148.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC------CE-------eE-EEEeCC-----CceeEEEEEcCCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HV-------QE-IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~------~V-------~~-Vafs~s-----~d~tIklWdi~tG 250 (464)
.+++. +| .|..++.|+.+..+|.+||+.+-+.... .+ .. |-+..+ .++.|..+|.+||
T Consensus 112 ~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 112 GVALW--GD-KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp CCEEE--BT-EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ceEEE--CC-EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 35553 45 4555788999999999999998654310 11 01 111111 2578999999999
Q ss_pred cEEEEEeeC-Cc-----------------------------ce-eeEEEEccCCCeEEEEeCCC----------------
Q 012410 251 TVLKVFYHL-LH-----------------------------RN-KKVDFIEQFNEKLLVKQENE---------------- 283 (464)
Q Consensus 251 ~~l~tl~~~-~~-----------------------------~~-~~V~F~~~~~~~lla~s~D~---------------- 283 (464)
+++.++... .. .+ ..+++.|. .+.+.++..++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l 267 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNL 267 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCce
Confidence 999988621 00 01 24677763 46777776665
Q ss_pred ---eEEEEECCCCcEEEEccc--CC-------CceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccCC-CC
Q 012410 284 ---NLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDHL-LW 345 (464)
Q Consensus 284 ---tIkIWDv~tg~~l~~l~g--h~-------~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH~-~~ 345 (464)
.|.-+|+.||+.+-..+. |. ..+....+..||+ .++.++ |+.+.++|. +|+++...+-.. .|
T Consensus 268 ~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 347 (668)
T 1kv9_A 268 YLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTW 347 (668)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCS
T ss_pred eeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccc
Confidence 499999999998865543 32 1222233445886 678888 999999998 799985433211 11
Q ss_pred cCC-----------------------C-------CeeEEEECCCCCEEEEEecCCC-----c-------cc---------
Q 012410 346 HPD-----------------------C-------NTNNIYITSDQDLIISYCKAEP-----E-------DQ--------- 374 (464)
Q Consensus 346 ~~~-----------------------~-------~v~svafSpDg~~LaSgs~~~~-----~-------~~--------- 374 (464)
... | +-..++|+|+..++......-+ . ..
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 000 0 0013788998887764321000 0 00
Q ss_pred ---c-ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 375 ---W-MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 375 ---~-~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
. ..+.+|+|.-||+.||+.+.++..+. .++...+...|..|
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-----------------------------------HWNGGTLSTAGNLV 472 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCEEEETTTEE
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCC-----------------------------------CCcCceeEeCCCEE
Confidence 0 12246999999999999998876543 22233445578889
Q ss_pred EEeeCCCcEEecc
Q 012410 451 YTGNRHGLVHVWS 463 (464)
Q Consensus 451 aSgs~DgtVrlWd 463 (464)
+.|+.|+.|++||
T Consensus 473 f~g~~dg~l~a~d 485 (668)
T 1kv9_A 473 FQGTAAGQMHAYS 485 (668)
T ss_dssp EEECTTSEEEEEE
T ss_pred EEECCcccchhhh
Confidence 9999999999987
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-05 Score=86.43 Aligned_cols=316 Identities=11% Similarity=0.101 Sum_probs=190.3
Q ss_pred cceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCC--CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 89 s~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~--~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
..|..++.. ...|-++...|+ ..||..+++......... ...|++++..++|.+.+. .. + .+.+
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl-~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~----t~-~-------gl~~ 154 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGL-SRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIS----TP-E-------GLIM 154 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCE-EEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEE----ET-T-------EEEE
T ss_pred cceeEEEECCCCCEEEEeCCch-heeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEE----EC-C-------ceEE
Confidence 457777766 223444556665 667766666443321101 112899999999987766 11 2 3555
Q ss_pred EEeccCCCCCcccceeeccccC-ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe---cCCCEeEEEEeCC----
Q 012410 166 EYIRRGKPDSGFALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKHVQEIKIRSS---- 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~-~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl---~~~~V~~Vafs~s---- 237 (464)
++..++++..-..... ... +.++.++ ++|++.+ |..++-+..||.+++++.... ....|.+|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~---~~~~i~~i~~d-~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw 229 (795)
T 4a2l_A 155 FDIKESKFIDDSFSTA---MHKTIASTLYR-QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW 229 (795)
T ss_dssp EETTTTEEECSSSCHH---HHTCCEEEEEE-ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE
T ss_pred EECCCCEEEeccCCCC---CCcceEEEEEC-CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE
Confidence 6655554321100000 012 4478886 7898877 455545888998888765322 2456888777442
Q ss_pred ---CceeEEEEEcCCCcEEEEEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc------
Q 012410 238 ---SHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT------ 301 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g------ 301 (464)
.+.-|.++|.+++++...... ....+.++...+ ++.|.+|..+ -|.+||..+++.......
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence 233588899888765443211 023456666433 5788888876 688999988887665322
Q ss_pred -CCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 012410 302 -EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 378 (464)
Q Consensus 302 -h~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s 378 (464)
....|.++...++|.+-+...++-|-.+|......+.+... ......-.|++++..++|.+.+. ..
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~---------- 375 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TN---------- 375 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ES----------
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-EC----------
Confidence 13579999999999988766677788999743333333211 01111223899999999998874 33
Q ss_pred CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 379 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 379 ~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
++-|..||..+++.......... +.. .. ....|++++.+++|+.|.-|..++-
T Consensus 376 -~~Gl~~~~~~~~~~~~~~~~~~~-~~~-~l------------------------~~~~v~~i~~d~~g~~lWigt~~~G 428 (795)
T 4a2l_A 376 -DGGLNLYNPITQRFTSYTLQEDE-SAR-GI------------------------GSNNIKAVYVDEKKSLVYIGTHAGG 428 (795)
T ss_dssp -SSCEEEECTTTCCEEEECCC--------CC------------------------SCSCEEEEEEETTTTEEEEEETTTE
T ss_pred -CCCeEEEcCCCCcEEEEecCCCC-ccc-CC------------------------CCccEEEEEEcCCCCEEEEEeCcCc
Confidence 66799999988876543322100 000 00 0027999999999995666666555
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
|.++|
T Consensus 429 l~~~d 433 (795)
T 4a2l_A 429 LSILH 433 (795)
T ss_dssp EEEEE
T ss_pred eeEEe
Confidence 55554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-06 Score=92.02 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcc------eeeEEEEc---cCCC---eEEEEeCCCeEEEEECCCCcEEEEcccCC----
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHR------NKKVDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEF---- 303 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~------~~~V~F~~---~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~gh~---- 303 (464)
..|.-+|.+||+.+-.++...|. ..+..+.. .++. .+++++.|+.+.++|..||+.+-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 57999999999999988732121 11222222 2232 34457899999999999999885432211
Q ss_pred --------Cce---------------------------------EEEEEcCCCcEEEEE---------------------
Q 012410 304 --------MTP---------------------------------SAFIFLYENQLFLTF--------------------- 321 (464)
Q Consensus 304 --------~~v---------------------------------~sv~FspdgqllaS~--------------------- 321 (464)
..+ ..++|+|+..++...
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 134677765554432
Q ss_pred ------------e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 322 ------------R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 322 ------------s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
. +++|..||. +|+.+-+.+.+... ++-.+...|.+++.|+. |+.++.+|
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~g~~-----------dg~l~A~D 513 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFD 513 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC------cccceEeCCCEEEEECC-----------CCcEEEEE
Confidence 2 578999999 79988776644322 22223335677777876 99999999
Q ss_pred CCCCeEEEEEccCC
Q 012410 388 ILTGKCLAKINATN 401 (464)
Q Consensus 388 i~tG~cl~tl~gh~ 401 (464)
..||+.+.+++...
T Consensus 514 ~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 514 AKSGKELWKFQTGS 527 (582)
T ss_dssp TTTCCEEEEEECSS
T ss_pred CCCCCEEEEecCCC
Confidence 99999999987654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-05 Score=83.19 Aligned_cols=307 Identities=9% Similarity=0.044 Sum_probs=182.8
Q ss_pred eEEEEec--cceeehhcc-CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 91 VIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 91 v~~~~~a--g~~l~~l~~-~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
+..++.. |++.+ ... .| +..|+..+++........+...|++++..++|...+.. .. .-+.+++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~G-l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt----~~-------~Gl~~~~ 241 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDG-LYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT----EG-------AGLFLIN 241 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSC-EEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE----BS-------SCEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCC-EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE----CC-------CCeEEEe
Confidence 6666654 55554 444 45 44566566665444322245669999999999877651 11 2344555
Q ss_pred eccCCCCCcccce--eec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe---------cCCCEeEEEEe
Q 012410 168 IRRGKPDSGFALF--ESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKHVQEIKIR 235 (464)
Q Consensus 168 i~~G~~~~~~~l~--~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl---------~~~~V~~Vafs 235 (464)
..++++....... ... ....+.++..+ ++|.+.+ |..+ -+.+||.+++++.... ....|.+|...
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D 318 (795)
T 4a2l_A 242 PKTKEIKNYLHSPSNPKSISSNYIRSLAMD-SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD 318 (795)
T ss_dssp TTTTEEEEECCCTTCTTSCSCSBEEEEEEC-TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC
T ss_pred CCCCeEEEeecCCCCccccCCCeEEEEEEc-CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe
Confidence 4444331100000 000 01234478886 7998776 4445 5888999888765432 23568888886
Q ss_pred CC-------CceeEEEEEcCCCcEEEEEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc
Q 012410 236 SS-------SHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 301 (464)
Q Consensus 236 ~s-------~d~tIklWdi~tG~~l~tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g 301 (464)
+. .++-|..++..+++.. .+.+ ....|.++.. +.++.|.+|..++-|..||..+++.......
T Consensus 319 ~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~--d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~ 395 (795)
T 4a2l_A 319 SQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE--DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQ 395 (795)
T ss_dssp TTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE--CTTSCEEEEESSSCEEEECTTTCCEEEECCC
T ss_pred CCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE--CCCCCEEEEECCCCeEEEcCCCCcEEEEecC
Confidence 53 3356777777655432 2221 1123566654 3358899999988899999998887665422
Q ss_pred --------CCCceEEEEEcCCCc-EEEEEeCCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 302 --------EFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 302 --------h~~~v~sv~Fspdgq-llaS~sD~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
....|.+++..++|+ +.+...++-|-++|.. |+.. .+.......+.-.|++++..++|.+.+...
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~---- 470 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL---- 470 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES----
T ss_pred CCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec----
Confidence 135789998889999 6655446779999984 6654 343211001112389999999999888652
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 372 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+-|.++|..++++...... .. +.. -....|.+++.+++|+..+
T Consensus 471 ---------~Gl~~~~~~~~~~~~~~~~-~~-~~~--------------------------~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 471 ---------SALVRFNPEQRSFTTIEKE-KD-GTP--------------------------VVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp ---------SCEEEEETTTTEEEECCBC-TT-CCB--------------------------CCCCCEEEEEECTTCCEEE
T ss_pred ---------CceeEEeCCCCeEEEcccc-cc-ccc--------------------------cCCceEEEEEECCCCCEEE
Confidence 3488899988876442211 00 000 0002789999999999777
Q ss_pred EeeCCCcE
Q 012410 452 TGNRHGLV 459 (464)
Q Consensus 452 Sgs~DgtV 459 (464)
... +|..
T Consensus 514 gt~-~Gl~ 520 (795)
T 4a2l_A 514 GGE-EGLS 520 (795)
T ss_dssp EES-SCEE
T ss_pred EeC-CceE
Confidence 655 5543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-05 Score=78.18 Aligned_cols=215 Identities=10% Similarity=0.082 Sum_probs=136.4
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc----------eeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH----------VPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d----------~tIklWdi~tG~~l~ 254 (464)
.+|..++++ ++|+++++...++.|..||..+ +....+. ......|++.++.. ..|-.+|.++|+...
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 467789997 7999888887889999999865 4443333 45688899977421 135555677887654
Q ss_pred EEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE-EE---------EcccCCCceEEEEEcCCCc-EEEEE
Q 012410 255 VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL-ME---------VSRTEFMTPSAFIFLYENQ-LFLTF 321 (464)
Q Consensus 255 tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~-l~---------~l~gh~~~v~sv~Fspdgq-llaS~ 321 (464)
.... .......+++.+ ++.+++.. .++.|..+|..+++. +. ...+....+..+ +|||+ ++++-
T Consensus 110 ~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 3321 112234444422 35666654 688999999876532 21 111233456666 88886 55666
Q ss_pred e-CCeEEEEeCC--Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s-D~TIklWd~~--Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ .++|..+|++ |++ ...+..- . . -..+++.|||++.++... .+.|.++|. .|+....
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~----P~gi~vd~dG~l~va~~~-----------~~~V~~~~~-~G~~~~~ 247 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQ-T-N----IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTII 247 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEES-C-C----CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEecc-C-C----CCCeEECCCCCEEEEeCC-----------CCeEEEECC-CCCEEEE
Confidence 6 8999999984 443 2222211 1 1 246999999998877543 678999996 5776332
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc---CCCCEEEEeeCC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD---EERNEIYTGNRH 456 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs---pDg~~LaSgs~D 456 (464)
..-.. .+...++++|. ||+++|+-.+..
T Consensus 248 ~~~~~--------------------------------~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQ--------------------------------GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGG--------------------------------TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eeccc--------------------------------ccCCceEEEEecccCCCCEEEEECCC
Confidence 11111 01278999999 999988876653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-05 Score=76.08 Aligned_cols=182 Identities=10% Similarity=0.098 Sum_probs=115.1
Q ss_pred cEEEEecCCCcEEEEeCCCCeE-------EEEecCCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~-------l~tl~~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
++|..+.. +.|+.+|+..... +..........+++.|. ....|..++..++.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 3677778765432 12222345678888763 3457888888755443333322245
Q ss_pred eeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe---CCeEEEEeCCCceEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR---NRTVAVWNFRGELVT 337 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s---D~TIklWd~~Ge~l~ 337 (464)
...++|.+. ++.+.++. .++.|.++|+...............+..+++.|+ |.++++-. .+.|...+.+|+..+
T Consensus 81 p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 81 PEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp EEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred ccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 588999874 56777664 7789999997654433333333467999999995 66666654 368888898887666
Q ss_pred Eec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 338 SFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 338 tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+. ....+ -+.++|+||++.|.-+.. ..++|...|+.+++....+
T Consensus 160 ~~~~~~~~~-----P~gia~d~~~~~lyv~d~----------~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 160 ILAQDNLGL-----PNGLTFDAFSSQLCWVDA----------GTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp EEECTTCSC-----EEEEEEETTTTEEEEEET----------TTTEEEEEETTEEEEEEEE
T ss_pred EEEECCCCC-----CcEEEEcCCCCEEEEEEC----------CCCEEEEEecCCCceEEEe
Confidence 653 22222 578999999877655443 2689999998655444433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-07 Score=98.64 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=130.8
Q ss_pred CCCcEEEEec-CCCcEEEEeCCCCeEEE--Eec-CCCEeEEEE-e-C--------------------------CCceeEE
Q 012410 196 VNGKVLTYSA-QDSIYKVFDLKNYTMLY--SIS-DKHVQEIKI-R-S--------------------------SSHVPLK 243 (464)
Q Consensus 196 pdGk~LaSgs-~D~tiKlWdl~tg~~l~--tl~-~~~V~~Vaf-s-~--------------------------s~d~tIk 243 (464)
|||++|--.. .+..|-+-|+++.++.. +++ ......++| + | ..+.++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4777765544 45679999999999988 554 466778887 3 2 1346899
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCC--------------------------------------eE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--------------------------------------NL 285 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~--------------------------------------tI 285 (464)
+.|.++.+++.++.-. ..-.-++++|+ +..+.+++++. .|
T Consensus 179 vID~~t~~v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEECCCCeEEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999988721 12356777774 55666666442 58
Q ss_pred EEEECCC--CcE-EEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-Cc------------eEEEeccCCCCcC
Q 012410 286 QILDVRN--AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GE------------LVTSFEDHLLWHP 347 (464)
Q Consensus 286 kIWDv~t--g~~-l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-Ge------------~l~tl~gH~~~~~ 347 (464)
.+.|.++ ++. +.+... ...+..+.|+|||+++..++ +.+|.+.|+. .+ .+.+.+--..
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g--- 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG--- 332 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC---
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC---
Confidence 8899988 544 443322 13567899999999877776 9999999984 42 3444442222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----------CeEEEEEccCC
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKINATN 401 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t----------G~cl~tl~gh~ 401 (464)
-+-++|+||| .+..... -|.+|-.||+.+ .+-+.++.-|-
T Consensus 333 ---P~h~aF~~dG-~aY~t~~----------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 333 ---PLHTAFDGRG-NAYTSLF----------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp ---EEEEEECTTS-EEEEEET----------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred ---cceEEECCCC-eEEEEEe----------cCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 3679999999 6655544 389999999988 67888887764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-06 Score=87.00 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=121.6
Q ss_pred CCCcEEE-EecCCCcEEEEeCCCC----eEEEEec--------CC-CEeEEEEeC-------C------CceeEEEEEcC
Q 012410 196 VNGKVLT-YSAQDSIYKVFDLKNY----TMLYSIS--------DK-HVQEIKIRS-------S------SHVPLKILSIE 248 (464)
Q Consensus 196 pdGk~La-Sgs~D~tiKlWdl~tg----~~l~tl~--------~~-~V~~Vafs~-------s------~d~tIklWdi~ 248 (464)
+++++|. +|-.+++|.|.|+++- +..+++. +. .-..+..+| . ..+.|-+.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 5676654 5667889999999865 6667772 10 112223322 1 23689999999
Q ss_pred CCcEEEEEeeCCcc---eeeEEEEccCCCeEEEEe-------------------CCCeEEEEECCCCcEEEEccc--CCC
Q 012410 249 DGTVLKVFYHLLHR---NKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNAELMEVSRT--EFM 304 (464)
Q Consensus 249 tG~~l~tl~~~~~~---~~~V~F~~~~~~~lla~s-------------------~D~tIkIWDv~tg~~l~~l~g--h~~ 304 (464)
|++++.++.-..+. -..+.|+|+ ...++++. .+.+|.+||+.+++.++++.- ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCeEEEEEccCCCCccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999999721111 245777885 33444442 389999999999998887654 223
Q ss_pred ceEEEEE--cCCCcEEEEE-------eCCeEEEEeC-CCce--EEE--eccC--CCCcC---------CCCeeEEEECCC
Q 012410 305 TPSAFIF--LYENQLFLTF-------RNRTVAVWNF-RGEL--VTS--FEDH--LLWHP---------DCNTNNIYITSD 359 (464)
Q Consensus 305 ~v~sv~F--spdgqllaS~-------sD~TIklWd~-~Ge~--l~t--l~gH--~~~~~---------~~~v~svafSpD 359 (464)
.+..+.| +|||+.+-.+ -+++|-+|.. .|+. ++. +... ...++ ......|.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 5666655 9999865443 2458887776 3542 111 1110 00000 011467999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCC---CCeEEEEEc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKIN 398 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~ 398 (464)
|++|..++. ..++|.++|+. +.+.+.++.
T Consensus 332 GrfLYVSnr----------g~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 332 DKFLYLSLW----------GIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp SCEEEEEET----------TTTEEEEEECSSTTSCEEEEEEE
T ss_pred CCEEEEEeC----------CCCEEEEEEecCCCCcEEEEEEE
Confidence 999998876 36899999985 345666653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-06 Score=81.85 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=126.7
Q ss_pred EEEEeCCCCcEEEEecCCC--cEEEEeCCCCeEEEEec-CCCE--eEEEEeCC-------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHV--QEIKIRSS-------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~--tiKlWdl~tg~~l~tl~-~~~V--~~Vafs~s-------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ ||.+..|.+.++ +|++.|++||+.+.++. .... -.|++..+ .+..+-++|.+|++.+.++.
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 68896 688888888865 99999999999998776 3333 33555432 56789999999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----CC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----h~-~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
... .=+.+++ +++.|.++..+.+|.++|..|.+.+....- +. ..+..+.+. +|+++|... +.+|.+-|.
T Consensus 125 ~~~-eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 125 YDG-EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp CSS-CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred CCC-CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence 432 2255653 466777766678899999999998875432 21 234456665 899998887 889999999
Q ss_pred -CCceEEEeccCCCC-------cCCCCeeEEEECCCCCEEEEEec
Q 012410 332 -RGELVTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~-------~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+|+.+.++.-.... -.+...|.|||+|+++.|...++
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 79999987653221 01123589999999998888775
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-05 Score=78.09 Aligned_cols=235 Identities=13% Similarity=0.048 Sum_probs=143.7
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--------------------CCCEeEEEEeC-C------
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--------------------DKHVQEIKIRS-S------ 237 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--------------------~~~V~~Vafs~-s------ 237 (464)
..|..++++ ++|.+|..+..++.|..||..+++... ... ......|++.+ +
T Consensus 19 ~~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 457789996 899877778888999999988765432 211 13578899986 3
Q ss_pred -CceeEEEEEcCCCcEEEEEee-----CCcceeeEEEEccCCCeEEEEeC------------------CCeEEEEECCCC
Q 012410 238 -SHVPLKILSIEDGTVLKVFYH-----LLHRNKKVDFIEQFNEKLLVKQE------------------NENLQILDVRNA 293 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~-----~~~~~~~V~F~~~~~~~lla~s~------------------D~tIkIWDv~tg 293 (464)
....|..+|..+|+. +++.. .......|++.+. ++.+.++.. ++.|..+|..++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 123377777766542 33321 1123466777661 256666532 367888998888
Q ss_pred cEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCCc---eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 294 ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 294 ~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~Ge---~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+..... .....+..++|+|||+ ++++-. ++.|..+++.|+ -...+.. ... -..+++.++|.+.++...
T Consensus 176 ~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-----P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 176 ETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-----PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-----EEEEEECTTSCEEEEEEE
T ss_pred EEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-----CCCeEECCCCCEEEEecC
Confidence 754433 2335678899999998 555656 889999998642 1222221 111 257999999998887542
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
... .....+..+.|..+|. .|+.+..+...... .+..++++++ .+|+
T Consensus 249 ~~~-~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~------------------------------~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 249 ELD-GNMHGRVDPKGIKFDE-FGNILEVIPLPPPF------------------------------AGEHFEQIQE-HDGL 295 (322)
T ss_dssp ETT-SSTTSCEEEEEEEECT-TSCEEEEEECCTTT------------------------------TTSCCCEEEE-ETTE
T ss_pred ccc-ccccCCCccEEEEECC-CCCEEEEEECCCCC------------------------------ccccceEEEE-eCCE
Confidence 000 0000011356888885 68888887543320 0125667777 4676
Q ss_pred EEEEeeCCCcEEecc
Q 012410 449 EIYTGNRHGLVHVWS 463 (464)
Q Consensus 449 ~LaSgs~DgtVrlWd 463 (464)
..++....+.|..++
T Consensus 296 L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 296 LYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECSSCSEEEEEE
T ss_pred EEEeecCCCceEEEe
Confidence 666666777777654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-05 Score=86.84 Aligned_cols=244 Identities=9% Similarity=0.008 Sum_probs=146.5
Q ss_pred eEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecccc
Q 012410 109 VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (464)
Q Consensus 109 ~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~ 186 (464)
.+.+||..+++ .+..+...+.....++++.++|.++++ ++.+- ..+.++|..+++....-.+.. . .
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~----GG~~~-----~~v~~yd~~t~~W~~~~~~~~-~--R 287 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDA-----KKTSLYDSSSDSWIPGPDMQV-A--R 287 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSST-----TCEEEEEGGGTEEEECCCCSS-C--C
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe----CCCCC-----CceEEecCcCCceeECCCCCc-c--c
Confidence 57889988887 344454444455556888899998877 44321 368888987776532211111 1 1
Q ss_pred CceEEEEeCCCCcEEEEec-CC-----CcEEEEeCCCCeEEEE-------ec----------CCCEeEEEE------eCC
Q 012410 187 WPGFVEFDDVNGKVLTYSA-QD-----SIYKVFDLKNYTMLYS-------IS----------DKHVQEIKI------RSS 237 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs-~D-----~tiKlWdl~tg~~l~t-------l~----------~~~V~~Vaf------s~s 237 (464)
+-.++++- +||++++.|+ .+ .++.+||.++.+.... +. ++.++-+.- ...
T Consensus 288 ~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~ 366 (656)
T 1k3i_A 288 GYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG 366 (656)
T ss_dssp SSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC
T ss_pred cccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEec
Confidence 21245553 6999999998 44 5799999998875432 10 112222211 112
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCc---------ceeeEEEEccCCCeEEE-EeCCC-----------eEEEEECCCCcEE
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLV-KQENE-----------NLQILDVRNAELM 296 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~---------~~~~V~F~~~~~~~lla-~s~D~-----------tIkIWDv~tg~~l 296 (464)
....+..||.++++.......... .-..|.|... +++|++ |+.++ .|.+||..+.+..
T Consensus 367 ~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV-KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp SSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT-TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred CccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC-CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 245789999998876654432111 1145555443 456655 66432 7889999998877
Q ss_pred EEc--ccCCCce-EEEEEcCCCcEEEEEe-C-----------CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 297 EVS--RTEFMTP-SAFIFLYENQLFLTFR-N-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 297 ~~l--~gh~~~v-~sv~FspdgqllaS~s-D-----------~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
+.. .-+.... .+.+..|||++++.++ + .++.+||........+..-. ++...-....+.|||+
T Consensus 446 ~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~--~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--IVRVYHSISLLLPDGR 523 (656)
T ss_dssp EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--SCCCTTEEEEECTTSC
T ss_pred EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC--CccccccHhhcCCCcE
Confidence 664 2222222 2446789999999998 5 57899998433333333211 1212223456789999
Q ss_pred EEEEEec
Q 012410 362 LIISYCK 368 (464)
Q Consensus 362 ~LaSgs~ 368 (464)
+++.|+.
T Consensus 524 v~v~GG~ 530 (656)
T 1k3i_A 524 VFNGGGG 530 (656)
T ss_dssp EEEEECC
T ss_pred EEecCCC
Confidence 9999985
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-06 Score=81.71 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=130.0
Q ss_pred CeEEEEec-C--CCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCe
Q 012410 218 YTMLYSIS-D--KHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN 284 (464)
Q Consensus 218 g~~l~tl~-~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~t 284 (464)
++.+.+++ + .-.+.+.|+.+ ....|+..|++||++++++.-. ...+.....+ .+++|.... .++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~-~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD-WKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE-ETTEEEEEESSSSE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE-eCCEEEEEEeeCCE
Confidence 34555555 2 34677777631 2358999999999999998732 3344422222 356777754 7899
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
+-++|..+++.+.++.-.. .-+.+ ++||+.|..+. +++|.++|. +.+.+.+++--....+--.+|.+.+. ||++
T Consensus 109 v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999876432 33444 46777666666 888999998 68988876642211110115667776 8877
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.|..-. +.+|-+-|..||+.+++|.-..-.+.... ......-...||
T Consensus 185 yan~w~-----------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~----------------------~~~~~~vlNGIA 231 (262)
T 3nol_A 185 FANVWQ-----------TNKIVRIDPETGKVTGIIDLNGILAEAGP----------------------LPSPIDVLNGIA 231 (262)
T ss_dssp EEEETT-----------SSEEEEECTTTCBEEEEEECTTGGGGSCS----------------------CCSSCCCEEEEE
T ss_pred EEEEcc-----------CCeEEEEECCCCcEEEEEECCcCcccccc----------------------ccCcCCceEEEE
Confidence 765544 78999999999999999965421000000 000112567899
Q ss_pred EcCCCCEEEEee
Q 012410 443 YDEERNEIYTGN 454 (464)
Q Consensus 443 fspDg~~LaSgs 454 (464)
|+|+++.|+-.+
T Consensus 232 ~dp~~~~lfVTG 243 (262)
T 3nol_A 232 WDKEHHRLFVTG 243 (262)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999999888665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-05 Score=76.45 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=128.2
Q ss_pred CeEEEEec---CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCe
Q 012410 218 YTMLYSIS---DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENEN 284 (464)
Q Consensus 218 g~~l~tl~---~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~t 284 (464)
++.+.+++ ..-.+.+.|+++ ....|+..|++||+.++++.-. ...+...... .+++|... -.++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~-~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVA-WRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEE-ETTEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEE-eCCEEEEEEeeCCE
Confidence 34455554 245777777652 2358999999999999988632 2333332222 24677664 48899
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
+.++|..+.+.+.++.... ..+.++ +|++.|..+. +++|.++|. +.+.+.+++-.....+--.+|-+.+. +|++
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999877543 345554 6666555555 889999998 78988877643221110115556654 7876
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.|-.-. +..|-+-|..||+++.+|.-..-.|...... .....-...||
T Consensus 163 yanvw~-----------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~---------------------~~~~~vlNGIA 210 (243)
T 3mbr_X 163 LANVWL-----------TSRIARIDPASGKVVAWIDLQALVPDADALT---------------------DSTNDVLNGIA 210 (243)
T ss_dssp EEEETT-----------TTEEEEECTTTCBEEEEEECGGGSTTTTSCC---------------------CTTSSCEEEEE
T ss_pred EEEECC-----------CCeEEEEECCCCCEEEEEECCcCcccccccc---------------------CCcCCceEEEE
Confidence 665433 6789999999999999996543211100000 00112567899
Q ss_pred EcCCCCEEEEee
Q 012410 443 YDEERNEIYTGN 454 (464)
Q Consensus 443 fspDg~~LaSgs 454 (464)
|+|+++.|+-.+
T Consensus 211 ~d~~~~~lfVTG 222 (243)
T 3mbr_X 211 FDAEHDRLFVTG 222 (243)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999988877655
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-06 Score=79.93 Aligned_cols=172 Identities=11% Similarity=0.081 Sum_probs=125.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCE--eEEEEeCC-------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV--QEIKIRSS-------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V--~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.++|+ ++.+..|.+.++.|++.|++||+.+.++-.... ..|++..+ .+..+-++|.+|++.+.++...
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~- 135 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS- 135 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-
Confidence 68996 688889999999999999999998876532222 33555432 5678999999999999999843
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CC---CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~---~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
..=+.+++ +++.|.++..+.+|.++|..|.+.+....- +. ..+..+.|. +|+++|... +.+|.+=|. +|
T Consensus 136 ~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 136 GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 22266664 456777776789999999999998875432 11 234555665 899998887 889999999 79
Q ss_pred ceEEEeccCCC--------CcCCCCeeEEEECCCCCEEEEEec
Q 012410 334 ELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 334 e~l~tl~gH~~--------~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.+.++.-... ...+...|.||+.|+++.|...++
T Consensus 212 ~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 212 TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99987763210 001123689999998776665543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-05 Score=79.30 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=109.2
Q ss_pred CEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceee--EEEEccCCCeEEEE-eCCCeEEEEECCCCcEEE
Q 012410 228 HVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVK-QENENLQILDVRNAELME 297 (464)
Q Consensus 228 ~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~--V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~ 297 (464)
-.+.+.|+. ..++.|+..|++||+.++++ .....+. +++ .+++|... -.++.+.++|..+++.+.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~---~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS---DGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE---CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE---eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 356666643 45566999999999999988 2234444 554 45666664 489999999999999999
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 298 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 298 ~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
++.-.. ..+.+ .+||+.|..+. +++|.++|. +.+.+.+++--....+--.+|.+.+. ||++.|....
T Consensus 131 ti~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~------- 199 (268)
T 3nok_A 131 TTRYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH------- 199 (268)
T ss_dssp EEECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-------
T ss_pred EEeCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-------
Confidence 877532 33555 46777776666 899999998 69998877643221110115667776 8877765544
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 376 MEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.+|-+-|..||+++++|.-.
T Consensus 200 ----s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 200 ----SSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp ----CSEEEEECTTTCBEEEEEECH
T ss_pred ----CCeEEEEeCCCCcEEEEEECC
Confidence 679999999999999999643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-05 Score=75.08 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=123.4
Q ss_pred EEEEeCCCCcEEEEecCC--CcEEEEeCCCCeEEEEec-CCCE--eEEEEeC-------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSIS-DKHV--QEIKIRS-------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D--~tiKlWdl~tg~~l~tl~-~~~V--~~Vafs~-------s~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ +|.+..|.+.+ +.|++.|+++|+.+.++. .... -.+++.. -.++.+-++|.+|++.+.++.
T Consensus 25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 68997 47788887775 599999999999998775 3332 3344443 246789999999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----CceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-----~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
.... =+.++ + ++++|.++..+.+|.++|..|.+.+....-.. ..+..+.+. +|+++|... +..|.+-|.
T Consensus 103 ~~~~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 103 YPGE-GWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp CSSC-CCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECT
T ss_pred CCCC-ceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEEC
Confidence 4322 25565 3 46777777678999999999999887654211 123344433 899998887 889999999
Q ss_pred -CCceEEEeccCCCC--------cCCCCeeEEEECCCCCEEEEEec
Q 012410 332 -RGELVTSFEDHLLW--------HPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~--------~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+|+.+.++.-.... -.+...|.||+.|+++.|...++
T Consensus 178 ~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 178 ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999977622110 01123689999999888777664
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00048 Score=75.29 Aligned_cols=269 Identities=13% Similarity=0.060 Sum_probs=158.7
Q ss_pred cceEEEEec--cceeehhcc-CCeEEeeecccccEeeEee-------------cCCCceEEEEEEeeCCCEEEEEEeecC
Q 012410 89 TKVIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLN-------------VSPDEVIRSLFYNKNNDSLITVSVYAS 152 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~-~g~~~~~~~~~g~~l~~ln-------------~~~~~~i~Sv~fs~~g~~l~svSa~~s 152 (464)
..|..++.. |++.. +.. .|+. .++..+++...... .-+...|++++..++|...+. +
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWig-----t 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIM-ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIG-----T 330 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEE-EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEE-----E
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeE-EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEE-----e
Confidence 346666653 44443 444 5554 45545544322211 113456999999999987655 1
Q ss_pred CCCcccceeeEEEEEeccCCCCCcccceee-------c--cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFES-------E--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY- 222 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-------~--~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~- 222 (464)
.+ .-+..++...+... .+.. . ....+.+++.+ ++|.+.+ |+.++-+-++|.++++..+
T Consensus 331 ~~------~Gl~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 331 WG------GGINFISNAPPTFH----TWSYSPTQMNESSLSNKVVSSVCDD-GQGKLWI-GTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp BS------SCEEEECSSCCSCE----EEC----CCCSSCCSSSCEEEEEEC-TTSCEEE-EEBSSCEEEEETTEEEEECC
T ss_pred cC------CeEEEeCCCCCcce----eeccCccccccCCCCCcceEEEEEc-CCCCEEE-EeCCCcEEEEECCCCeEEEc
Confidence 11 22333333333221 1100 0 11234478885 7888765 5555557888987665432
Q ss_pred ----EecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee---CCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 223 ----SISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 223 ----tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~---~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
.+....|+++...+. .+.-|..+|.++|+... +.. ....+.++.. +.++.|.++.. +-|.++
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~--d~~g~lwigt~-~Gl~~~ 474 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYE--DKNKKIWIGTH-AGVFVI 474 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEE--CTTSEEEEEET-TEEEEE
T ss_pred cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEE--CCCCCEEEEEC-CceEEE
Confidence 234567888887643 24568888888776433 221 1234566654 33578888877 568899
Q ss_pred ECCCCcEEEEcccC-----CCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 289 DVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 289 Dv~tg~~l~~l~gh-----~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
|..+++........ ...|.++...++|++.+...++-+-.+|..+..++.+..... .+.-.|.+++..++|.+.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEG-FCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTT-CSCSCEEEEEECTTSCEE
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCC-CCCCeeEEEEECCCCCEE
Confidence 99888765543222 367899999999999988773336668886555555542211 122348899999999988
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
++.. .|-|..+|..+++.
T Consensus 554 i~T~------------~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 554 LATG------------EGLVCFPSARNFDY 571 (781)
T ss_dssp EEET------------TEEEEESCTTTCCC
T ss_pred EEEC------------CCceEEECCCCCcE
Confidence 8753 56558889877764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-05 Score=77.77 Aligned_cols=246 Identities=9% Similarity=0.083 Sum_probs=141.9
Q ss_pred ccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc------------eeEEEEEcCC
Q 012410 185 LKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH------------VPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d------------~tIklWdi~t 249 (464)
+..|..|+|+ | +|.+.+ +...+.|+.+|+++++...... ......|+|+++.. ...-+|-..+
T Consensus 136 ~~~P~~lavd-p~~~g~Lyv-~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 136 FGGAVWLSFD-PKNHNHLYL-VGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CSCCCEEEEE-TTEEEEEEE-EEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCCEEEEC-CCCCCeEEE-EeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 5678899998 6 354444 4333789999998877654444 45688899987533 1112222233
Q ss_pred CcEE--EEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 250 GTVL--KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 250 G~~l--~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
|... ..+.. ......+++.|. ++.|.++. .++.|..+|..+++..... .+....+..++|+|+|+ ++++-. +
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred Cceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 4332 23332 133477888773 46777764 7789999998887753322 22235789999999999 677766 8
Q ss_pred CeEEEEeCCC---ce--EEEeccC---CCCcCC------C-Cee-EEEEC--------CCCCEEEEEecCCCccccccCC
Q 012410 324 RTVAVWNFRG---EL--VTSFEDH---LLWHPD------C-NTN-NIYIT--------SDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 324 ~TIklWd~~G---e~--l~tl~gH---~~~~~~------~-~v~-svafS--------pDg~~LaSgs~~~~~~~~~~s~ 379 (464)
+.|..++.+| ++ +.++.+. ..+... . .-. .+++. ++|.+.++=..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~----------- 360 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE----------- 360 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-----------
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-----------
Confidence 9999988754 33 3444443 111000 0 012 45553 45777766433
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCc
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGL 458 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~Dgt 458 (464)
.+.|+.+| .+|+ +.++-|..... ..-..+| .......|..-+.|+++|+ |..+++-...+.
T Consensus 361 n~~I~~i~-~~G~-v~~~~g~g~~~--~~G~~dG--------------~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 422 (430)
T 3tc9_A 361 NHCIRILT-PQGR-VTTFAGRGSNG--TSGYNDG--------------DLRQEARFNHPEGIVYDEERECFFIGDRENRR 422 (430)
T ss_dssp GTEEEEEC-TTSE-EEEEEECCTTS--SSSCBCE--------------ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CcEEEEEC-CCCc-EEEEEeCCCCC--CCcccCC--------------CchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 57888888 5775 44443431000 0000000 0001122447789999995 666666666777
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
||..+
T Consensus 423 Ir~i~ 427 (430)
T 3tc9_A 423 IRKIG 427 (430)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-05 Score=83.59 Aligned_cols=235 Identities=9% Similarity=0.030 Sum_probs=143.8
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-C-----CEe-------E-EEEeCC-----CceeEEEEEcCCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQ-------E-IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~-----~V~-------~-Vafs~s-----~d~tIklWdi~tG 250 (464)
.++.. +|+ |..++.|+.+..+|.+||+.+-+... . .+. . |-+... .++.|..+|.+||
T Consensus 110 ~~~~~--~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 110 GLAYG--AGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CCEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred ccEEE--CCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 34553 554 44567899999999999998855431 1 111 1 111111 1689999999999
Q ss_pred cEEEEEeeCCcc-------------------------------------e-eeEEEEccCCCeEEEEeC-----------
Q 012410 251 TVLKVFYHLLHR-------------------------------------N-KKVDFIEQFNEKLLVKQE----------- 281 (464)
Q Consensus 251 ~~l~tl~~~~~~-------------------------------------~-~~V~F~~~~~~~lla~s~----------- 281 (464)
+.+.++...... + ..+++.+. .+.+..+..
T Consensus 187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~~~~~~~~ 265 (571)
T 2ad6_A 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRP 265 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSC
T ss_pred cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCccccCCccC
Confidence 999988632111 0 12455553 456666542
Q ss_pred -C----CeEEEEECCCCcEEEEcc--cCC-------CceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 282 -N----ENLQILDVRNAELMEVSR--TEF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 282 -D----~tIkIWDv~tg~~l~~l~--gh~-------~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
| +.|..+|..||+.+-..+ +|. ..+.-+...+||+ +++.++ ++.+.+.|. +|+++..++-.
T Consensus 266 gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~ 345 (571)
T 2ad6_A 266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence 2 369999999999886543 221 1222233346885 677788 999999998 79998765421
Q ss_pred --CCCcCC-------------------------C-------CeeEEEECCCCCEEEEEecCC-----------Ccccccc
Q 012410 343 --LLWHPD-------------------------C-------NTNNIYITSDQDLIISYCKAE-----------PEDQWME 377 (464)
Q Consensus 343 --~~~~~~-------------------------~-------~v~svafSpDg~~LaSgs~~~-----------~~~~~~~ 377 (464)
..|... | +=..++|+|+..+|...+..- .+.+...
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 111000 0 002478999988887765310 0001000
Q ss_pred ---------------CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 378 ---------------GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 378 ---------------s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
..++.|..||+.||+.+.++.... .+++..
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-----------------------------------~~~~~~ 470 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-----------------------------------AAWGGT 470 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-----------------------------------CCCSBC
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-----------------------------------Ccccee
Confidence 246899999999999988875432 112222
Q ss_pred EcCCCCEEEEeeCCCcEEecc
Q 012410 443 YDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd 463 (464)
+...+..++.|+.||.|+.||
T Consensus 471 ~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 471 LYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEE
T ss_pred EEECCCEEEEEcCCCeEEEEE
Confidence 333567788888999998887
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00018 Score=77.31 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=94.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C---------CC--EeE------EEEeCC------CceeEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D---------KH--VQE------IKIRSS------SHVPLKI 244 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~---------~~--V~~------Vafs~s------~d~tIkl 244 (464)
.++.. +|+ |..++.|+.+.-.|.+||+.+-... . .. +.. +.+-.. .++.|.-
T Consensus 112 g~a~~--~~~-v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~a 188 (582)
T 1flg_A 112 GAAIY--GDK-VFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFA 188 (582)
T ss_dssp CCEEE--TTE-EEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEE
T ss_pred ccEEE--CCE-EEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEE
Confidence 34453 554 4456789999999999999885432 1 11 122 333222 3678999
Q ss_pred EEcCCCcEEEEEeeCC----------------------------------------cce-eeEEEEccCCCeEEEEeC--
Q 012410 245 LSIEDGTVLKVFYHLL----------------------------------------HRN-KKVDFIEQFNEKLLVKQE-- 281 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~----------------------------------------~~~-~~V~F~~~~~~~lla~s~-- 281 (464)
+|.+||+.+-+..... +.+ ..+++.|. .+.+.++..
T Consensus 189 lD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~ 267 (582)
T 1flg_A 189 RDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNP 267 (582)
T ss_dssp ECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCB
T ss_pred EECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCC
Confidence 9999999998765210 000 12445553 456666542
Q ss_pred ------------------C----CeEEEEECCCCcEEEEcc--cCC-------CceEEEEEc-CCCc---EEEEEe-CCe
Q 012410 282 ------------------N----ENLQILDVRNAELMEVSR--TEF-------MTPSAFIFL-YENQ---LFLTFR-NRT 325 (464)
Q Consensus 282 ------------------D----~tIkIWDv~tg~~l~~l~--gh~-------~~v~sv~Fs-pdgq---llaS~s-D~T 325 (464)
| +.|.-+|+.||+.+-..+ .|. ..+.-+... .+|+ +++.++ |+.
T Consensus 268 ~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~ 347 (582)
T 1flg_A 268 GPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF 347 (582)
T ss_dssp SSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE
T ss_pred CcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce
Confidence 3 689999999999886543 332 122222222 5784 788888 999
Q ss_pred EEEEeC-CCceEEEecc
Q 012410 326 VAVWNF-RGELVTSFED 341 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~g 341 (464)
+.++|. +|+++-.+.-
T Consensus 348 l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 348 FYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEETTTCCEEEEEES
T ss_pred EEEEECCCCCEeccccc
Confidence 999998 7999876553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00065 Score=74.25 Aligned_cols=312 Identities=13% Similarity=0.045 Sum_probs=180.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeec------CCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~------~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..++.. |++... ...| +..|+..+++....... -....|++++..++|.+.+. +++ .
T Consensus 212 ~i~~i~~d~~g~lwig-t~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-----t~~------~ 278 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIG-TSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA-----TEL------N 278 (781)
T ss_dssp SEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEE-----ESS------S
T ss_pred ceeEEEEcCCCCEEEE-eCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEE-----eCC------C
Confidence 46666664 555443 3345 45566566654433211 12456999999999876654 221 1
Q ss_pred eEEEEEeccCCCCCccc----ce-e---ec--cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--------
Q 012410 162 STKIEYIRRGKPDSGFA----LF-E---SE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------- 223 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~----l~-~---~~--~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t-------- 223 (464)
-+.+.+..+++...... .+ . .. ....+.++..+ .+|.+.+ |+.++-|-.++..++....-
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 356 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMN 356 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCC
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCCEEE-EecCCeEEEeCCCCCcceeeccCccccc
Confidence 34445544444321000 00 0 00 01223478885 7887665 66566688888876654321
Q ss_pred ---ecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC
Q 012410 224 ---ISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 290 (464)
Q Consensus 224 ---l~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv 290 (464)
+....|.+|+..++ .+.-|..+|..+++...-.. .....+.++... .++.|.+|..++-|..+|.
T Consensus 357 ~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 357 ESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD--SEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp SSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC--TTSCEEEEETTEEEEEECS
T ss_pred cCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC--CCCCEEEEeccCCEEEEcC
Confidence 12456888887653 23457777776554322110 111345666543 3588999988888999999
Q ss_pred CCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 291 RNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 291 ~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.+++...... -....|.++...++|++.+... +-|-++|. +++...-............|.+++..++|.+.++..
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 8888765432 1346789998899999887766 56888998 466543322220000112288999999999988653
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 012410 368 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 447 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg 447 (464)
++-|..+|..+++.. .+......| ...|.+++.+++|
T Consensus 514 ------------~~Gl~~~~~~~~~~~-~~~~~~~l~------------------------------~~~i~~i~~d~~g 550 (781)
T 3v9f_A 514 ------------GGGVGIYTPDMQLVR-KFNQYEGFC------------------------------SNTINQIYRSSKG 550 (781)
T ss_dssp ------------SSCEEEECTTCCEEE-EECTTTTCS------------------------------CSCEEEEEECTTS
T ss_pred ------------CCCEEEEeCCCCeEE-EccCCCCCC------------------------------CCeeEEEEECCCC
Confidence 234777898777643 332211100 0178999999999
Q ss_pred CEEEEeeCCCcEEecc
Q 012410 448 NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 448 ~~LaSgs~DgtVrlWd 463 (464)
+..++.. +|.|..||
T Consensus 551 ~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 551 QMWLATG-EGLVCFPS 565 (781)
T ss_dssp CEEEEET-TEEEEESC
T ss_pred CEEEEEC-CCceEEEC
Confidence 9776655 77745554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00014 Score=70.48 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=116.7
Q ss_pred cCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEe---c---CCCEeEEEEeC-CC-------------------
Q 012410 186 KWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI---S---DKHVQEIKIRS-SS------------------- 238 (464)
Q Consensus 186 ~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl---~---~~~V~~Vafs~-s~------------------- 238 (464)
..|..++|+ + +|++++.... ..+..+|..+++..... . -.....|++.| +.
T Consensus 80 ~~p~gi~~~-~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYN-LQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEE-TTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEc-CCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 457789997 6 7877765444 44888898776532111 1 13467788876 41
Q ss_pred ------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCc--EEEEcccCCCceEEE
Q 012410 239 ------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE--LMEVSRTEFMTPSAF 309 (464)
Q Consensus 239 ------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv 309 (464)
++.|..+|..+|++....... ..-..|+|+++ +..|.++ ..++.|..+|+.+.. -.+++..... +..+
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKEL-HVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEE-SCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCC-ccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 245777777777654333321 33467899884 4556666 467899999987521 1122111112 8899
Q ss_pred EEcCCCcEEEEEeC-----------CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 012410 310 IFLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 378 (464)
Q Consensus 310 ~FspdgqllaS~sD-----------~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s 378 (464)
++.++|++.++... +.|..+|.+|+.+..+........ ..+.++++ .+|++.++...
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~~~~~~~-~~g~L~v~~~~---------- 302 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EHFEQIQE-HDGLLYIGTLF---------- 302 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SCCCEEEE-ETTEEEEECSS----------
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-ccceEEEE-eCCEEEEeecC----------
Confidence 99999998888642 567788888999988876532100 01456777 57777776543
Q ss_pred CCCeEEEEeCC
Q 012410 379 SAGSINVSSIL 389 (464)
Q Consensus 379 ~DgtIklWdi~ 389 (464)
.+.|..+++.
T Consensus 303 -~~~i~~~~~~ 312 (322)
T 2fp8_A 303 -HGSVGILVYD 312 (322)
T ss_dssp -CSEEEEEEC-
T ss_pred -CCceEEEecc
Confidence 6778888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0002 Score=69.29 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=130.6
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
+.+.+..+.. ..+..++++.++|..+++ ...+ +.|..++. .|+.. ..+.. -++|..++|+ +
T Consensus 21 ~~~~~~~~p~--~~~pegia~~~~g~lyv~----d~~~------~~I~~~d~-~g~~~---~~~~~--~~~p~gia~~-~ 81 (306)
T 2p4o_A 21 PAKIITSFPV--NTFLENLASAPDGTIFVT----NHEV------GEIVSITP-DGNQQ---IHATV--EGKVSGLAFT-S 81 (306)
T ss_dssp CEEEEEEECT--TCCEEEEEECTTSCEEEE----ETTT------TEEEEECT-TCCEE---EEEEC--SSEEEEEEEC-T
T ss_pred CceEeEeCCC--CCCcceEEECCCCCEEEE----eCCC------CeEEEECC-CCceE---EEEeC--CCCceeEEEc-C
Confidence 3444555522 256789999999985555 1122 45555553 34321 12222 2467799997 8
Q ss_pred CCcEEEEecCCCc--EEEEeCCCCeEEEE--ecC-CCEeEEEEeC--------CCceeEEEEEcCCCcE-EEEEe-----
Q 012410 197 NGKVLTYSAQDSI--YKVFDLKNYTMLYS--ISD-KHVQEIKIRS--------SSHVPLKILSIEDGTV-LKVFY----- 257 (464)
Q Consensus 197 dGk~LaSgs~D~t--iKlWdl~tg~~l~t--l~~-~~V~~Vafs~--------s~d~tIklWdi~tG~~-l~tl~----- 257 (464)
||+++++...... |-.+|..+|+.... +.. .....+++.+ ...+.|..+|..+|+. +....
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 9998776544333 55567788876432 222 2223333322 2345666777665532 11111
Q ss_pred ----eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCC-CcE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 258 ----HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 258 ----~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~t-g~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
.....-..| ++ +++.|.++ ...+.|..+|+.. |+. .+++.. ...+..+++.+||+++++-. .+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred ccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 011122344 45 35667665 4788999999875 432 122211 24577899999999998887 889999
Q ss_pred EeCCCceEE--EeccCCCCcCCCCeeEEEEC---CCCCEEEEEe
Q 012410 329 WNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYC 367 (464)
Q Consensus 329 Wd~~Ge~l~--tl~gH~~~~~~~~v~svafS---pDg~~LaSgs 367 (464)
+|.+|++.. .+.....+ ..+++|. ||++.|.-.+
T Consensus 238 ~~~~G~~~~~~~~~~~~~~-----p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 238 IAPDRSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECTTCCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEEE
T ss_pred ECCCCCEEEEeecccccCC-----ceEEEEecccCCCCEEEEEC
Confidence 999898744 34333233 6799999 8987766554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00021 Score=77.37 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=95.0
Q ss_pred EEEEeCCCCc---EEEEecCCCcEEEEeCCCCeEEEEecC-C-----CE-------eE-EEEeCC-----CceeEEEEEc
Q 012410 190 FVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HV-------QE-IKIRSS-----SHVPLKILSI 247 (464)
Q Consensus 190 ~VaFs~pdGk---~LaSgs~D~tiKlWdl~tg~~l~tl~~-~-----~V-------~~-Vafs~s-----~d~tIklWdi 247 (464)
.+++++.+|+ .|..++.|+.+.-.|.+||+.+-.... . .+ .. |-+..+ .++.|.-+|.
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC
Confidence 4666422444 145577899999999999998854321 1 11 11 111111 3689999999
Q ss_pred CCCcEEEEEeeCCcc-------------------------------------ee-eEEEEccCCCeEEEEeCC-------
Q 012410 248 EDGTVLKVFYHLLHR-------------------------------------NK-KVDFIEQFNEKLLVKQEN------- 282 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~-------------------------------------~~-~V~F~~~~~~~lla~s~D------- 282 (464)
+||+.+-++...... ++ ..++.+ ..+.+.++..+
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCc
Confidence 999999888732111 11 234444 34667776544
Q ss_pred ---------CeEEEEECCCCcEEEEccc--CCC-------ceEEEEEc-CCC---cEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 283 ---------ENLQILDVRNAELMEVSRT--EFM-------TPSAFIFL-YEN---QLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 283 ---------~tIkIWDv~tg~~l~~l~g--h~~-------~v~sv~Fs-pdg---qllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
..|.-+|..||+.+-..+. |.. .+.-+... .|| .+++.++ ++.+-+.|. +|+++-.
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 4899999999998865442 311 12222233 578 5788788 999999998 7999876
Q ss_pred ec
Q 012410 339 FE 340 (464)
Q Consensus 339 l~ 340 (464)
.+
T Consensus 349 ~~ 350 (599)
T 1w6s_A 349 NK 350 (599)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00047 Score=71.30 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=146.4
Q ss_pred cccCceEEEEeCCC---CcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCC---CcEEE--
Q 012410 184 SLKWPGFVEFDDVN---GKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIED---GTVLK-- 254 (464)
Q Consensus 184 ~~~~~~~VaFs~pd---Gk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~t---G~~l~-- 254 (464)
.+..|..|+|+ |+ |.+.++-.. +.|+.+|+++++...... ......|+|+++.. |-+=|... ...+.
T Consensus 137 ~~~~P~gvavd-~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 137 AFDNIWRMMFD-PNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCSCCCEEEEC-TTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred ccCCCceEEEc-cccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678899997 64 766665444 889999999888765444 35688999988644 32222210 01011
Q ss_pred ----------EEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEc-c-cCCCceEEEEEcCCCc-EEEE
Q 012410 255 ----------VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-R-TEFMTPSAFIFLYENQ-LFLT 320 (464)
Q Consensus 255 ----------tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l-~-gh~~~v~sv~Fspdgq-llaS 320 (464)
.+.. ...-..+++.|. ++.|.++. .++.|+.+|..+|+....+ . +.......++|+|+|+ ++++
T Consensus 213 ~~~~~~~~~~~~~~-~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLCN-ARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEEE-CSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeeccccccc-cCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 1111 122356777773 46777664 7789999999888873322 1 2223456799999998 7777
Q ss_pred Ee-CCeEEEEeCC---Cce--EEEeccCC---CCcC-------CCCeeEEEE---------CCCCCEEEEEecCCCcccc
Q 012410 321 FR-NRTVAVWNFR---GEL--VTSFEDHL---LWHP-------DCNTNNIYI---------TSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 321 ~s-D~TIklWd~~---Ge~--l~tl~gH~---~~~~-------~~~v~svaf---------SpDg~~LaSgs~~~~~~~~ 375 (464)
-. ++.|..++.+ |++ ..++.|.. .+.. -..-..++| .++|.+.++-..
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------- 363 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------- 363 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-------
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-------
Confidence 77 8999998864 433 23444431 1100 001356999 788888887543
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCC-CCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEe
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCS-PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTG 453 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSg 453 (464)
.+.|+..+ .+|+ +.++-|.... ..+. .+| .......|..-+.|+++ ++|+.+++=
T Consensus 364 ----n~~I~~~~-~~G~-v~t~~G~g~~~~~G~---~dG--------------~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 364 ----SHTVRVLT-PEGR-VTTYAGRGNSREWGY---VDG--------------ELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp ----TTEEEEEC-TTSE-EEEEECCCTTCSSCC---BCE--------------ETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEC-CCCC-EEEEEeCCCCCcccc---CCC--------------ccccccEeCCCcEEEEECCCCEEEEEe
Confidence 68899998 4785 4455443210 0000 000 00001224477899999 677777776
Q ss_pred eCCCcEEecc
Q 012410 454 NRHGLVHVWS 463 (464)
Q Consensus 454 s~DgtVrlWd 463 (464)
...+.||..+
T Consensus 421 ~~n~rIr~i~ 430 (433)
T 4hw6_A 421 CDNHRVRKIA 430 (433)
T ss_dssp GGGTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6777887654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-05 Score=81.44 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=106.6
Q ss_pred eEEEEEEe-eCCCEEEEEEeec-CCCCcccceeeEEEEEeccC-CCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 131 VIRSLFYN-KNNDSLITVSVYA-SDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 131 ~i~Sv~fs-~~g~~l~svSa~~-sddfs~L~~~ti~l~~i~~G-~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
.+.+..|| |||+.||-++... ++. .+++++++.+| +.... .++. . ...++|+ |||+.|++.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~------~~l~v~dl~~g~~~l~~--~~~~-~---~~~~~Ws-pDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEV------YTIEFKRISDPSQTIAD--KVSG-T---NGEIVWG-PDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSC------EEEEEEETTCTTCCCCC--CEEE-E---CSCCEEC-SSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCce------EEEEEEECCCCCEeCCc--cccC-c---eeeEEEe-cCCCEEEEEEEC
Confidence 68899999 9999988755332 233 57999999999 64211 1111 1 2378897 899999988776
Q ss_pred CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE--EEEEee-CCcceeeEEEEccCCCeEEEEe---C
Q 012410 208 SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV--LKVFYH-LLHRNKKVDFIEQFNEKLLVKQ---E 281 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~--l~tl~~-~~~~~~~V~F~~~~~~~lla~s---~ 281 (464)
.+ +. ...|.++++.+++. ...+.. .......+.|+| ++.+|+..+ .
T Consensus 242 ~~--------~~-------------------~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 293 (751)
T 2xe4_A 242 ET--------LR-------------------ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPE 293 (751)
T ss_dssp TT--------CC-------------------EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSS
T ss_pred CC--------CC-------------------CCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCC
Confidence 31 00 01222333333321 111111 112234567777 455666543 3
Q ss_pred CCeEEEEECCCC--cE--EEEcccCCCceEEEEEcCCCcEEEEEe-C--C--eEEEEeCC-CceEEE-eccCCCCcCCCC
Q 012410 282 NENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-N--R--TVAVWNFR-GELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 282 D~tIkIWDv~tg--~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D--~--TIklWd~~-Ge~l~t-l~gH~~~~~~~~ 350 (464)
...|.++|+.++ +. .....++....+++.|..++++++.+. | + .|-++|+. +...+. +-.|... ..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~---~~ 370 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED---VF 370 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS---EE
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC---cE
Confidence 456888999886 34 444444555667776666677766666 5 3 44445554 233333 3334321 12
Q ss_pred eeEEEECCCCCEEEEEec
Q 012410 351 TNNIYITSDQDLIISYCK 368 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~ 368 (464)
+.++.+. .+.+++++..
T Consensus 371 l~~~~~~-~~~lv~~~~~ 387 (751)
T 2xe4_A 371 MESIAVR-SNYLVVAGRR 387 (751)
T ss_dssp EEEEEEC-SSEEEEEEEE
T ss_pred EEEEEEE-CCEEEEEEEe
Confidence 4556554 3345566554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00013 Score=78.77 Aligned_cols=253 Identities=9% Similarity=-0.039 Sum_probs=137.9
Q ss_pred EEEEee-CCCEEEEEEeecCCCCcccc--eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCc
Q 012410 134 SLFYNK-NNDSLITVSVYASDNFSSLK--CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSI 209 (464)
Q Consensus 134 Sv~fs~-~g~~l~svSa~~sddfs~L~--~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~t 209 (464)
++++.| +|++++..+ +..+.|.... -..+.+||..+++......... ....|-.++++. +||++++.|+. +.+
T Consensus 190 ~~av~~~~g~l~v~GG-~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSS-YRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEE-CCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEec-ccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCc
Confidence 667777 777666633 2222221111 1368889998888643211111 112233357886 89999999984 568
Q ss_pred EEEEeCCCCeEEEE--ecCC-CEeEEEEeC--------C-C-----ceeEEEEEcCCCcEEEEE----e-eCCcceeeEE
Q 012410 210 YKVFDLKNYTMLYS--ISDK-HVQEIKIRS--------S-S-----HVPLKILSIEDGTVLKVF----Y-HLLHRNKKVD 267 (464)
Q Consensus 210 iKlWdl~tg~~l~t--l~~~-~V~~Vafs~--------s-~-----d~tIklWdi~tG~~l~tl----~-~~~~~~~~V~ 267 (464)
+.+||..+.+.... +... .-.++++-+ . . -..+.+||.++++-...- . -...+... .
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~-~ 345 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG-L 345 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG-G
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc-e
Confidence 99999988765432 2211 111222211 1 1 157999999988654320 0 00000000 0
Q ss_pred EEccCCCeEEEEeC---------CCeEEEEECCCCcEEEEcccCC---------CceEEEEEc-CCCcEEEEEe-CC---
Q 012410 268 FIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEF---------MTPSAFIFL-YENQLFLTFR-NR--- 324 (464)
Q Consensus 268 F~~~~~~~lla~s~---------D~tIkIWDv~tg~~l~~l~gh~---------~~v~sv~Fs-pdgqllaS~s-D~--- 324 (464)
+.. ++..++.++. ...+..||..+.+.......+. ..-.++.|. .++++++.|+ +.
T Consensus 346 ~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 YRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 001 1222334443 3567899999888665433221 123566665 5899999987 54
Q ss_pred --------eEEEEeC-CCceEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 325 --------TVAVWNF-RGELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 325 --------TIklWd~-~Ge~l~tl--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+|.+||. +++..... .-+.... --+.++.|||++++.|+......--....-.++.+||..+++.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~----~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFART----FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB----SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc----cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 7889998 45544333 1122221 1245678999999999852110000001136799999988776
Q ss_pred EE
Q 012410 394 LA 395 (464)
Q Consensus 394 l~ 395 (464)
..
T Consensus 501 ~~ 502 (656)
T 1k3i_A 501 YK 502 (656)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=67.01 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=111.5
Q ss_pred CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
...|+..|+.+++....+. ......|+|.+. ..+.|..+++..+.....+.........+++.+. ++.|
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~-~g~l 173 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV-HDKL 173 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT-TTEE
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC-CCeE
Confidence 3568888888766544444 356888998763 3356777777755443333322234467888764 4666
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEec-cCCCCcCCCCe
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFE-DHLLWHPDCNT 351 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~-gH~~~~~~~~v 351 (464)
... ...+.|.+.++........+......|..+++.|+ |.++.+-. + +.|...+.+|...+.+- ....+ -
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~-----P 248 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW-----P 248 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC-----E
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC-----e
Confidence 554 46789999997655544445555678999999985 56666665 5 78988898887666654 33334 5
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.|+|+|++..|.-+.. ..+.|...|+.
T Consensus 249 nGlavd~~~~~lY~aD~----------~~~~I~~~d~d 276 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDA----------KHHVIERANLD 276 (386)
T ss_dssp EEEEEEGGGTEEEEEET----------TTTEEEEECTT
T ss_pred eeEEEeCCCCEEEEEEC----------CCCEEEEEeCC
Confidence 79999988776655432 36789999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00071 Score=67.55 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=132.9
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l 253 (464)
+.+|..|+|++.++.+..+-...+.|..+++..+.....+. -.....|++.+. ....|.+.+.. |+..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~ 150 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHR 150 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCce
Confidence 35677999985577777777778899999988665433333 234567888652 34578888876 4444
Q ss_pred EEEe-eCCcceeeEEEEccCCCeEEEEe-CC-CeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEE
Q 012410 254 KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAV 328 (464)
Q Consensus 254 ~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D-~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIkl 328 (464)
.++. ..+..-..+++.|. ++.|..+. .+ +.|...|+...............|..++|+| ++.++.+-+ .++|..
T Consensus 151 ~~l~~~~l~~P~~iavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EEEECTTCSCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCcceEEEecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 4433 33344588998874 56676654 44 7888888654443333344556899999997 555666666 889999
Q ss_pred EeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.|++|.-.+++-.-...+ -..+++ .++.+.++-.. .+.|...|..+|+-+.++......|.
T Consensus 230 ~~~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~~~~p~ 290 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNKLHFPM 290 (349)
T ss_dssp EETTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECSCSCCC
T ss_pred EeCCCCceEEEEeCCCCC----ceEEEE-ECCEEEEecCC-----------CCeEEEEEccCCCccEEeccCCCCCc
Confidence 999876555443222222 357888 45555555433 78898889789988888865433343
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0027 Score=62.14 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=113.4
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCC---CcEEEE-EeeCCcceeeEEEEccCC
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIED---GTVLKV-FYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~t---G~~l~t-l~~~~~~~~~V~F~~~~~ 273 (464)
..|+.-|+.+++....+. ......++|.+. ....|..+++.+ |....+ +.........+++.+. +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~-~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-H 88 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-T
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec-C
Confidence 458888988877655555 456788888763 345677777764 232232 2222244578888763 4
Q ss_pred CeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-C-CeEEEEeCCCceEEEecc-CCCCcCC
Q 012410 274 EKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFED-HLLWHPD 348 (464)
Q Consensus 274 ~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D-~TIklWd~~Ge~l~tl~g-H~~~~~~ 348 (464)
+.|... ..++.|.+.|+...............|..+++.| +|.++.+-. . +.|...+.+|+..+.+.. ...+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~--- 165 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW--- 165 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC---
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCC---
Confidence 666665 5789999999765554444444557899999998 566666665 4 789888998887776643 2334
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.++++|+++.|.-+.. ..+.|...|+. |.-.+++
T Consensus 166 --P~gla~d~~~~~lY~~D~----------~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 166 --PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp --EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred --ceEEEEeccCCEEEEEEC----------CCCeEEEEecC-CCceEEE
Confidence 579999998877765432 26789999974 5444444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00016 Score=76.24 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCeEEEEe-CCCeEEEEECCCC----cEEEEcc-------cCCCceEEEEEcCCCcEEEEEe-C------CeEEEEeC-C
Q 012410 273 NEKLLVKQ-ENENLQILDVRNA----ELMEVSR-------TEFMTPSAFIFLYENQLFLTFR-N------RTVAVWNF-R 332 (464)
Q Consensus 273 ~~~lla~s-~D~tIkIWDv~tg----~~l~~l~-------gh~~~v~sv~FspdgqllaS~s-D------~TIklWd~-~ 332 (464)
..+|.+.+ .+.+|.+.|+.+. +..++.+ .....+..+..+||| +++|.. | +.|-+.|. +
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 45666654 8899999999877 7777773 122367788999999 888876 6 79999998 6
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC---------CccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE---------PEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~---------~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
++.+.+++--..... + -..+.|+||++.++|..-.. +++-.. ..+.+|.+||+.+++.+++|.--..
T Consensus 174 ~~v~~~~~~~~~~~~-~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~-~~~d~V~v~D~~~~k~~~tI~vg~~- 249 (462)
T 2ece_A 174 FEPLGKWEIDRGDQY-L-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD-RYGNRIHFWDLRKRKRIHSLTLGEE- 249 (462)
T ss_dssp CCEEEECCSBCTTCC-C-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH-HSCCEEEEEETTTTEEEEEEESCTT-
T ss_pred CeEEEEEccCCCCcc-c-cceEEECCCCCEEEEccCcCccccccccchhhhhh-ccCCEEEEEECCCCcEeeEEecCCC-
Confidence 999999972211100 0 13477899999999874100 010000 1268999999999999998854210
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEE--EEcCCCCEEEEeeC------CCcEEec
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL--FYDEERNEIYTGNR------HGLVHVW 462 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl--afspDg~~LaSgs~------DgtVrlW 462 (464)
|. ...-| +|+|||++++.+++ +++|-+|
T Consensus 250 ---------g~----------------------~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 250 ---------NR----------------------MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp ---------EE----------------------EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred ---------CC----------------------ccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 00 12234 45999999999885 5577654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0026 Score=63.41 Aligned_cols=173 Identities=11% Similarity=0.083 Sum_probs=112.7
Q ss_pred CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
...|+..++...+....+. ......|+|.+. ..+.|..+++.++.....+.........+++.+. ++.|
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~-~g~l 130 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV-HDKL 130 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT-TTEE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC-CCeE
Confidence 3457777887655544444 356788888763 3346666777655433333322234467888763 4666
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-C-CeEEEEeCCCceEEEeccC-CCCcCCCCe
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDH-LLWHPDCNT 351 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D-~TIklWd~~Ge~l~tl~gH-~~~~~~~~v 351 (464)
... ...+.|.+.|+........+......|..+++.| +|.++.+-. + +.|...+.+|...+++-.. ..+ -
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~-----P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW-----P 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC-----E
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC-----c
Confidence 665 4778999999765544444445567899999998 566777766 6 8899999988877766432 333 5
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+.|+|+|++..|.-+.. ..++|...|+ .|.-..+
T Consensus 206 nGla~d~~~~~lY~aD~----------~~~~I~~~~~-dG~~~~~ 239 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDA----------KHHVIERANL-DGSHRKA 239 (349)
T ss_dssp EEEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEE
T ss_pred ceEEEeCCCCEEEEEEC----------CCCEEEEEeC-CCCceEE
Confidence 79999997776655432 3678999986 4443333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00053 Score=69.40 Aligned_cols=203 Identities=13% Similarity=0.141 Sum_probs=133.1
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeCC---------CceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRSS---------SHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l 253 (464)
+.+|..|+|++.+|.+..+-...+.|..+++..+.....+.. .....|++.+. ....|.+.++. |...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCce
Confidence 466779999855777777777888999999876654333332 34566777652 33467777775 4433
Q ss_pred EEEe-eCCcceeeEEEEccCCCeEEEEe-CC-CeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEE
Q 012410 254 KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAV 328 (464)
Q Consensus 254 ~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D-~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIkl 328 (464)
.++. ..+..-..|++.|. ++.|..+. .+ +.|...|+...............|..++|+| +++++.+-+ .+.|..
T Consensus 194 ~~l~~~~l~~P~giavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272 (386)
T ss_dssp EEEECSSCSCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEeecCCCCCCcEEEEEcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence 3333 33344588888874 56776654 44 7888888765444444445566899999996 555666666 889999
Q ss_pred EeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.|++|.-..++-.....+ -..|++ .++.+.++-.. .+.|...|..+|+-+.++......|.
T Consensus 273 ~d~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~~~~p~ 333 (386)
T 3v65_B 273 ANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNKLHFPM 333 (386)
T ss_dssp ECTTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECSCSCCC
T ss_pred EeCCCCeeEEEEECCCCC----ceEEEE-ECCEEEEeeCC-----------CCeEEEEECCCCcceEEEccCCCCCc
Confidence 999876555443322333 357888 45556655433 78899999889998888865433344
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0023 Score=65.85 Aligned_cols=247 Identities=13% Similarity=0.137 Sum_probs=130.1
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
+.|......+.++.++.. +..+..+.. ....-..|+|+++|+.|.++. ...+ ..+..-++..+.|......
T Consensus 150 g~Lyv~d~~~~I~~id~~-~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad--~~~~----~~~~~v~~~~~~g~~~~~~- 220 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFE-KEYVSTVYS-GLSKVRTICWTHEADSMIITN--DQNN----NDRPNNYILTRESGFKVIT- 220 (430)
T ss_dssp EEEEEEEBTEEEEEEETT-TTEEEEEEC-CCSCEEEEEECTTSSEEEEEE--CCSC----TTSEEEEEEEGGGTSCSEE-
T ss_pred CeEEEEeCCCcEEEEECC-CCEEEEEec-CCCCcceEEEeCCCCEEEEEe--CCCC----cccceEEEEeCCCceeeee-
Confidence 344444444778888844 444555534 344578999999999666633 2111 1122334444666653211
Q ss_pred ceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEE--EEecC-CCEeEEEEeCCCceeEEEEEcCCCcEEE
Q 012410 179 LFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTML--YSISD-KHVQEIKIRSSSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l--~tl~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~ 254 (464)
.+. .+.+|..++++ | +|.++++-..++.|..+|..++... ..+.. .+-..|+|+|+.. .+-+=|..+
T Consensus 221 ~l~--~~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~-~lyv~d~~~----- 291 (430)
T 3tc9_A 221 ELT--KGQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN-YAYIVVVNQ----- 291 (430)
T ss_dssp EEE--ECSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS-EEEEEETTT-----
T ss_pred eec--cCCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC-EEEEEECCC-----
Confidence 122 35788899997 7 8988887777888999998776642 12211 2345566665521 122222221
Q ss_pred EEeeCCcceeeEEEEccCC----CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-EEEEc--------CCCcEEEEE
Q 012410 255 VFYHLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFL--------YENQLFLTF 321 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-sv~Fs--------pdgqllaS~ 321 (464)
+++..+++....+ -..+++..... ....| ......+..|. .++.. ++|.++++-
T Consensus 292 ------~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~~dg---~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD 358 (430)
T 3tc9_A 292 ------HYILRSDYDWKTKRLTTPYIVCGQQGAK----DWVDG---VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358 (430)
T ss_dssp ------TEEEEEEEETTTTEECCCEEEEECTTCB----CCBCE---EGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred ------CEEEEEeCCcccccccceEEEeccCCCC----CCCCC---CCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence 2222222211000 01122210000 00000 01122345677 55553 568999988
Q ss_pred e-CCeEEEEeCCCceEEEeccC-----CCCcCC--------CCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 322 R-NRTVAVWNFRGELVTSFEDH-----LLWHPD--------CNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH-----~~~~~~--------~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
. ++.|+.+|.+|+... +.|. ..+... ..=+.|+++| +|.++++-.. ...|+..
T Consensus 359 ~~n~~I~~i~~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~-----------n~rIr~i 426 (430)
T 3tc9_A 359 RENHCIRILTPQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE-----------NRRIRKI 426 (430)
T ss_dssp GGGTEEEEECTTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG-----------GTEEEEE
T ss_pred CCCcEEEEECCCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC-----------CCeEEEE
Confidence 8 899999998886544 4332 110000 0146899999 5777766433 5677776
Q ss_pred eC
Q 012410 387 SI 388 (464)
Q Consensus 387 di 388 (464)
++
T Consensus 427 ~~ 428 (430)
T 3tc9_A 427 GY 428 (430)
T ss_dssp EE
T ss_pred cc
Confidence 64
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00078 Score=71.66 Aligned_cols=250 Identities=12% Similarity=0.127 Sum_probs=146.5
Q ss_pred cccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEecC-----CCEeEEEE-------eCCCc----------
Q 012410 184 SLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI-------RSSSH---------- 239 (464)
Q Consensus 184 ~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----~~V~~Vaf-------s~s~d---------- 239 (464)
.+..|..++|+ | ++++.++....+.|++.|+++++....+.. +....|+| +++.+
T Consensus 137 ~~~~p~~la~d-p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 137 GFSDNGRLAFD-PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp CCCSEEEEEEE-TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred ccCCCCEEEEc-cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 35678899998 6 355555544446788899988776554432 24789999 76432
Q ss_pred -----eeEEEEEcCC-CcEE-----EEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC-------CCcE-----
Q 012410 240 -----VPLKILSIED-GTVL-----KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR-------NAEL----- 295 (464)
Q Consensus 240 -----~tIklWdi~t-G~~l-----~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~-------tg~~----- 295 (464)
..|.+.+... |+.. +++... .+-..+++.|. ++.|.+. ..++.|..+|+. +++.
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 2255554343 3331 222211 22357777773 5666665 588899999998 6664
Q ss_pred ------EEE-c-ccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCC---ce--EEEeccC---CCCcCC------C-C
Q 012410 296 ------MEV-S-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG---EL--VTSFEDH---LLWHPD------C-N 350 (464)
Q Consensus 296 ------l~~-l-~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~G---e~--l~tl~gH---~~~~~~------~-~ 350 (464)
++. + .+...++..++|+|+|+ ++++-+ .+.|+.+|.+| .+ ..++.|. ..+... . .
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 222 1 22345789999999999 566766 89999977643 22 1455543 111000 0 0
Q ss_pred ee-EEEEC-------CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC---Cccc-ccCCCCCCcc
Q 012410 351 TN-NIYIT-------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP---KVDD-ELGSSSTGKS 418 (464)
Q Consensus 351 v~-svafS-------pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~---~~~~-~~~~~~~~~~ 418 (464)
-. .++.. ++|.+.++=+. ...||..+ .+|+ +.++-|..... .... -..+|
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~-----------N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG----- 435 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRL-----------NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDG----- 435 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGG-----------GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCE-----
T ss_pred CeEEEEEccccccccCCCeEEEEECC-----------CCEEEEEe-CCCC-EEEEecccccccccCccccccCCC-----
Confidence 12 34554 56777776443 68999998 5885 56776642100 0000 00000
Q ss_pred ccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd 463 (464)
-......|..-+.|+++|+ |+..++=+....||..+
T Consensus 436 ---------~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 436 ---------DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp ---------ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ---------CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 0001123447789999997 77666666777888654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0087 Score=58.48 Aligned_cols=197 Identities=8% Similarity=0.040 Sum_probs=127.4
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC---CeEEE-EecC--CCEeEEEEeCC---------CceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLY-SISD--KHVQEIKIRSS---------SHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---g~~l~-tl~~--~~V~~Vafs~s---------~d~tIklWdi~t 249 (464)
+..|..++|++.++++..+....+.|..+|+.+ +.... .+.. .....||+.+. ....|.+.+..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~- 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK- 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-
Confidence 456779999844566777777789999999876 23222 2322 35678888642 34578888876
Q ss_pred CcEEEEEe-eCCcceeeEEEEccCCCeEEEEeC-C-CeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCC-cEEEEEe-C
Q 012410 250 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE-N-ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYEN-QLFLTFR-N 323 (464)
Q Consensus 250 G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~-D-~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdg-qllaS~s-D 323 (464)
|+..+++- .....-..+++.|. ++.|..+.. . +.|...++. |...+++ ......+..++++|++ +++.+-+ .
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 54444443 23345588898874 567766653 2 688888864 5544443 3455789999999865 5556655 8
Q ss_pred CeEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 324 RTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.|...|++|.-.+++... ...+ -..+++. .+.+.++-.. .+.|...|..+|+-+.++...
T Consensus 186 ~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~-~~~ly~~d~~-----------~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 186 HSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTDII-----------NEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSS----EEEEEEE-TTEEEEEETT-----------TTEEEEEETTTCCCCEEEECS
T ss_pred CeEEEEecCCCceEEEeecCCccCC----cEEEEEE-CCEEEEEECC-----------CCeEEEEeCCCCcceEEEecC
Confidence 8999999987655555321 2222 3578884 4555555432 789999998899888887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0022 Score=66.25 Aligned_cols=230 Identities=10% Similarity=0.091 Sum_probs=128.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|++.++ ...+.++.++..+|+..... . .......|+++++|+.+++ . .... ..+...++....+.....
T Consensus 153 g~Lyv~-D~~~~I~~id~~~g~v~~~~-~-~~~~P~giavd~dG~lyVa-d--~~~~----~~~~gv~~~~~~~~~~~~- 221 (433)
T 4hw6_A 153 DDLYWV-GQRDAFRHVDFVNQYVDIKT-T-NIGQCADVNFTLNGDMVVV-D--DQSS----DTNTGIYLFTRASGFTER- 221 (433)
T ss_dssp CEEEEE-CBTSCEEEEETTTTEEEEEC-C-CCSCEEEEEECTTCCEEEE-E--CCSC----TTSEEEEEECGGGTTCCE-
T ss_pred CEEEEE-eCCCCEEEEECCCCEEEEee-c-CCCCccEEEECCCCCEEEE-c--CCCC----cccceEEEEECCCCeecc-
Confidence 444433 33377888886666655443 2 3445899999999994444 2 1110 011222233344433211
Q ss_pred cceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec---C-CCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 178 ALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---D-KHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~-~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
..+. .+.+|..++++ | +|.+.++-..++.|..+|..+|+....+. . ..-..|+|+|+
T Consensus 222 ~~~~--~~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd--------------- 283 (433)
T 4hw6_A 222 LSLC--NARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT--------------- 283 (433)
T ss_dssp EEEE--ECSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT---------------
T ss_pred cccc--ccCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC---------------
Confidence 1122 35778899997 7 88888777777888888887776532221 1 11123444443
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC--CCcEE--EE---------------cccCCCceEEEEE-
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAELM--EV---------------SRTEFMTPSAFIF- 311 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~--tg~~l--~~---------------l~gh~~~v~sv~F- 311 (464)
+..|.++ ...+.|+.+|.. ++++. .+ ....+..|..++|
T Consensus 284 --------------------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 284 --------------------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV 343 (433)
T ss_dssp --------------------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred --------------------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence 2223332 234444444432 22110 11 1123567999999
Q ss_pred --------cCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-----CcCC--------CCeeEEEEC-CCCCEEEEEec
Q 012410 312 --------LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-----WHPD--------CNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 312 --------spdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~-----~~~~--------~~v~svafS-pDg~~LaSgs~ 368 (464)
.++|.++++-. ++.|+..+.+|+.. ++.|... +... -.-+.|++. ++|.++++=..
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 88999999988 89999999889544 4444311 0000 013689999 77777776443
Q ss_pred CCCccccccCCCCeEEEEeC
Q 012410 369 AEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi 388 (464)
.+.|+..++
T Consensus 423 -----------n~rIr~i~~ 431 (433)
T 4hw6_A 423 -----------NHRVRKIAP 431 (433)
T ss_dssp -----------GTEEEEEEE
T ss_pred -----------CCEEEEEec
Confidence 567777664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-05 Score=84.07 Aligned_cols=111 Identities=9% Similarity=0.151 Sum_probs=70.5
Q ss_pred eeEEEE-ccCCCeEEEEe-----CCCeEEEEECCCC-cEEEEcccCC-CceEEEEEcCCCcEEEEEe-C-----CeEEEE
Q 012410 264 KKVDFI-EQFNEKLLVKQ-----ENENLQILDVRNA-ELMEVSRTEF-MTPSAFIFLYENQLFLTFR-N-----RTVAVW 329 (464)
Q Consensus 264 ~~V~F~-~~~~~~lla~s-----~D~tIkIWDv~tg-~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D-----~TIklW 329 (464)
..++|+ | ++.+|+.+. +..+|+++|+.+| +.+. .+. ....+++|+|||+.|+-.+ | ..|.++
T Consensus 177 ~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 177 MEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred eeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 456676 5 344444332 2346999999999 7321 111 1134678999999888777 6 367888
Q ss_pred eC-CCce--EEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 330 NF-RGEL--VTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 330 d~-~Ge~--l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++ +++. ...+++ +..+ ..++.+||||++|+-.+.+ .....|.++|+.++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~-----~~~~~~SpDg~~l~~~~~~--------~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLF-----SAFMYKAADTNTLCIGSQS--------PETAEVHLLDLRKG 305 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTC-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEESSSC
T ss_pred ECCCCchhcEEEEecCCCce-----EEEEEECCCCCEEEEEecC--------CCCceEEEEECCCC
Confidence 88 4532 233332 2234 4578999999999876641 12456888998776
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0035 Score=66.64 Aligned_cols=262 Identities=16% Similarity=0.114 Sum_probs=142.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecC--CCceEEEEEE-------eeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFY-------NKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~--~~~~i~Sv~f-------s~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
+++.++-...+.+++.|..+++....+..+ .-+-.+.|+| +++|+.|.++. -..+ .....+.+.+-+.
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad--~~~~-~~~~~~~V~~i~r 228 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI--DYDG-KGDESPSVYIIKR 228 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE--CCCT-TGGGEEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe--CCCC-CcccCceEEEEec
Confidence 344444444466787775554444333222 1234899999 99999777733 2211 0011123333332
Q ss_pred cc-CCCCC-c-ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-------CCeE--------------EEEe
Q 012410 169 RR-GKPDS-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NYTM--------------LYSI 224 (464)
Q Consensus 169 ~~-G~~~~-~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-------tg~~--------------l~tl 224 (464)
.. |++.. . ...+. ...||..+++++.+|.++++-..++.|..+|++ ++.. +.++
T Consensus 229 ~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~ 306 (496)
T 3kya_A 229 NADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI 306 (496)
T ss_dssp CTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC
T ss_pred CCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec
Confidence 22 34421 0 01222 347888999973377777777788889999997 6654 2333
Q ss_pred cC-CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC----CeEEEEe--CCCeEEEEECCCCcEEE
Q 012410 225 SD-KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN----EKLLVKQ--ENENLQILDVRNAELME 297 (464)
Q Consensus 225 ~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~----~~lla~s--~D~tIkIWDv~tg~~l~ 297 (464)
.. .+-..|+|+|+.. .+.|=|.. .|+++.+++....+ ..++++. ..+.. | |.
T Consensus 307 ~~~~~p~~ia~~p~G~-~lYvaD~~-----------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~---D---G~--- 365 (496)
T 3kya_A 307 ADPSWEFQIFIHPTGK-YAYFGVIN-----------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR---D---DV--- 365 (496)
T ss_dssp SSSSCCEEEEECTTSS-EEEEEETT-----------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCB---C---CB---
T ss_pred CCCCCceEEEEcCCCC-EEEEEeCC-----------CCEEEEEecCCCcceecccEEecCCCCCCccc---C---Cc---
Confidence 32 3446777776622 23333322 25666665543211 1234442 11110 1 11
Q ss_pred EcccCCCceEE-EEEc-------CCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-----------CcCC--------C
Q 012410 298 VSRTEFMTPSA-FIFL-------YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-----------WHPD--------C 349 (464)
Q Consensus 298 ~l~gh~~~v~s-v~Fs-------pdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~-----------~~~~--------~ 349 (464)
-....+..|.. ++.. ++|.++++=. ++.|+..+.+|. +.|+.|... .... -
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~ 444 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFR 444 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred ccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcC
Confidence 11234567884 4444 6789998888 999999998895 567765411 0000 0
Q ss_pred CeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 350 NTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 350 ~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.-..|++.|+ |.+.++=+. ...||..++....|++-.
T Consensus 445 ~P~gIavd~~~g~lyVaD~~-----------N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 445 DVSGLVYDDVKEMFYVHDQV-----------GHTIRTISMEQEENVAGD 482 (496)
T ss_dssp SEEEEEEETTTTEEEEEETT-----------TTEEEEEEECCCC-----
T ss_pred CCcEEEEECCCCEEEEEeCC-----------CCEEEEEECCCCcccccC
Confidence 1358999997 877776433 689999999888887654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.011 Score=58.53 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=138.3
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRS- 236 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~- 236 (464)
+.|+..++..+..... .+.. .+..+-.|+|+..+|++..+-...+.|..+++.++.... .+. -.....||+.+
T Consensus 13 ~~I~~i~l~~~~~~~~-~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENAT-IVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCCE-EEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEEE-EEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4566666554432111 1121 224455899985467777777788899999988663211 111 23456777764
Q ss_pred --------CCceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 --------SSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 --------s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
.....|.+.+.. |...+++. .....-..+++.|. ++.|..+. ..+.|...|+...............
T Consensus 90 ~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~ 167 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167 (318)
T ss_dssp TTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred CCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 234578888876 54444443 33344578888874 46776654 4678888886543333333444578
Q ss_pred eEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+..++|+| +++++.+-+ .+.|...|++|.-.+++-.....+ -..+++.. +.+..+-. ..+.|
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~----P~glav~~-~~lywtd~-----------~~~~V 231 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH----PFALTLFE-DILYWTDW-----------STHSI 231 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC----EEEEEEET-TEEEEEET-----------TTTEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC----ceEEEEeC-CEEEEEec-----------CCCeE
Confidence 99999998 455666666 889999999876555554322333 35777743 34444432 27899
Q ss_pred EEEeCCCCeEEEEEccCCCCCC
Q 012410 384 NVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~ 405 (464)
...|..+|+-++++......|.
T Consensus 232 ~~~~~~~G~~~~~i~~~~~~P~ 253 (318)
T 3sov_A 232 LACNKYTGEGLREIHSDIFSPM 253 (318)
T ss_dssp EEEETTTCCSCEEEECCCSSCC
T ss_pred EEEECCCCCceEEEeCCCCCCc
Confidence 9999989988777755433333
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.89 E-value=0.018 Score=58.50 Aligned_cols=200 Identities=8% Similarity=0.033 Sum_probs=127.3
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCC----eEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg----~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
++.|..|+|+..++++..+-...+.|..+++... .....+. -.....||+.+ .....|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4567799998446767777777889999998752 2222222 24567888865 2345788888764
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T 325 (464)
+.....+...+..-..|++.|. ++.|..+. ....|...++..........+....|..++|+|+++ ++.+-. .++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 4333333333345588898884 56776654 347888889765444444445557899999997655 555555 889
Q ss_pred EEEEeCCCceEEEecc-C-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 326 VAVWNFRGELVTSFED-H-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 326 IklWd~~Ge~l~tl~g-H-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|...|++|.-.+++-. + ...+ -..|++ ..+.+..+-.. .++|...|..+|+-+.++....
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~----P~gl~v-~~~~lywtd~~-----------~~~V~~~~~~~G~~~~~i~~~~ 331 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAH----PFSLAV-FEDKVFWTDII-----------NEAIFSANRLTGSDVNLLAENL 331 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSS----EEEEEE-ETTEEEEEESS-----------SCSEEEEESSSCCCCEEEECSC
T ss_pred EEEEeCCCCccEEEEeCCCCCCC----CEEEEE-eCCEEEEecCC-----------CCeEEEEEcCCCCceEEEecCC
Confidence 9999998765555532 2 1222 246766 23344444332 6889999988998888886443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0082 Score=58.94 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=119.1
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ec----CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee----
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS----DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH---- 258 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~----~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~---- 258 (464)
..|+|. +++..++.| .++.| +.....|+--.. +. ...+.+|+|.|. .+-+- -+.|.++++-.+
T Consensus 39 ~~v~~~-~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~---~~~~~-g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 39 LDMSFI-DRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGN---EGWIV-GEPPIMLHTTDGGQSW 111 (327)
T ss_dssp EEEEES-SSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETT---EEEEE-EETTEEEEESSTTSSC
T ss_pred EEEEEC-CCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCC---eEEEE-ECCCeEEEECCCCCCc
Confidence 378896 567777754 56654 333333432111 11 236888998762 11110 122333333211
Q ss_pred --------CCcceeeEEEEccCCCeEEEEeCCCeE-EEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 259 --------LLHRNKKVDFIEQFNEKLLVKQENENL-QILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 259 --------~~~~~~~V~F~~~~~~~lla~s~D~tI-kIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
+......|.+.++ +.+++.+.++.| +-+| .|+ -.....++...+.+++|.|++++++.+. ....+
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGN--GSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEET--TEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred eECccccCCCCCeEEEEEECC--CCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 1123466776653 566666666655 4344 343 2333345556788999999999998887 55556
Q ss_pred EEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
-+|-.|+-.+.+. ++... +.+++++|+|++++.+. +|.|.+++...|+-...+..-.- +
T Consensus 188 S~d~gG~tW~~~~~~~~~~-----~~~~~~~~~g~~~~~~~------------~G~~~~s~~D~G~tW~~~~~~~~-~-- 247 (327)
T 2xbg_A 188 TWEPGQTAWEPHNRTTSRR-----LHNMGFTPDGRLWMIVN------------GGKIAFSDPDNSENWGELLSPLR-R-- 247 (327)
T ss_dssp EECTTCSSCEEEECCSSSC-----EEEEEECTTSCEEEEET------------TTEEEEEETTEEEEECCCBCTTS-S--
T ss_pred EeCCCCCceeECCCCCCCc-----cceeEECCCCCEEEEeC------------CceEEEecCCCCCeeEeccCCcc-c--
Confidence 6664455444332 22222 78999999999887653 78888875223553332211000 0
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.-..+.+|+|.|+++.++.|. +|.|
T Consensus 248 ---------------------------~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 248 ---------------------------NSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp ---------------------------CCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred ---------------------------CCcceEEEEecCCCEEEEEeC-CCeE
Confidence 001588999999988877765 5655
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.027 Score=55.18 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=86.9
Q ss_pred eeeEEEEccCCCeEEEEe-CCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCC-CceEEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTS 338 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~-Ge~l~t 338 (464)
+..++|.++ +.+++.+ .....+-+|- .+=+.+. .+....+.+++++|++++++.+.++.|.+++.+ |+-.+.
T Consensus 165 ~~~~~~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 165 MRNLNRSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGE 240 (327)
T ss_dssp EEEEEECTT--SCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECC
T ss_pred eEEEEEcCC--CcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEe
Confidence 355666653 4555544 3344444552 1222232 234457889999999999887779999888644 664443
Q ss_pred eccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 339 FEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 339 l~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+..- .... -.+.+|++.|+++++|.+. +++|. +....|+--..+.....
T Consensus 241 ~~~~~~~~~--~~~~~v~~~~~~~~~~~g~------------~g~i~-~S~DgG~tW~~~~~~~~--------------- 290 (327)
T 2xbg_A 241 LLSPLRRNS--VGFLDLAYRTPNEVWLAGG------------AGALL-CSQDGGQTWQQDVDVKK--------------- 290 (327)
T ss_dssp CBCTTSSCC--SCEEEEEESSSSCEEEEES------------TTCEE-EESSTTSSCEECGGGTT---------------
T ss_pred ccCCcccCC--cceEEEEecCCCEEEEEeC------------CCeEE-EeCCCCcccEEcCccCC---------------
Confidence 3211 0000 1277899999999998874 67773 33334554444332110
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
. -..+.+|+|.++++ ++.++.+|+|.-++
T Consensus 291 -------------~---~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 291 -------------V---PSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp -------------S---SSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred -------------C---CCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 0 01567788886555 66667788886554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.84 E-value=0.028 Score=57.12 Aligned_cols=204 Identities=13% Similarity=0.113 Sum_probs=129.7
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
-..+..|+|.+.++.|.. ++... +.|...++..+.............+..|..+|++..+|.+..+-+..+
T Consensus 111 ~~~~~~l~~d~~~~~lyw--sD~~~-------~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYW--SDLSQ-------RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCEEEEEEETTTTEEEE--EETTT-------TEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred cCcceEEeeeeccCceEE--EecCC-------CeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence 345789999997777766 22333 356555653321100011111123467889999844777777777888
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------S-HVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~ 275 (464)
.|.+.|+........+. -.....|++.|. . ...|...++. |+..+++- .....-..|++.+. +++
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~~~l~~P~glavd~~-~~~ 259 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLL-SGR 259 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEECSSCSCEEEEEEETT-TTE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEECCCCceEEEEEEeC-CCE
Confidence 99999987544332332 245789999773 1 2456666764 55544443 22345588999874 567
Q ss_pred EEEE-eCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 276 LLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 276 lla~-s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
|..+ ...+.|...|+..+....+..+ ....+.++++ .++.++.+-. .+.|...|. +|+.+.++.....
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~ 332 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 332 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCS
T ss_pred EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCC
Confidence 7666 4778999999865544443332 3457888887 5677888887 889999995 8998888875543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.009 Score=59.64 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=77.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec-----CCCEeEEEEeCC----C-------------ce
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKIRSS----S-------------HV 240 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~-----~~~V~~Vafs~s----~-------------d~ 240 (464)
+.+|..++|+ |||+++++- .++.|++++ +|+. +..+. ......|+|+|+ . ..
T Consensus 30 l~~P~~ia~~-pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFL-PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEEC-TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEc-CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4578899997 899988764 568899998 5653 22232 246789999885 1 03
Q ss_pred eEEEEEcCCCc-----EE-EEEe---eCCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEECCCCc---
Q 012410 241 PLKILSIEDGT-----VL-KVFY---HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDVRNAE--- 294 (464)
Q Consensus 241 tIklWdi~tG~-----~l-~tl~---~~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv~tg~--- 294 (464)
.|..++...++ .+ ..+. ...|.-..++|.|+ +.|.++..| +.|.-+|.. |.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d-G~~p~ 182 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPE-GEPAP 182 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTT-SSBCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCC-CCCCC
Confidence 45566665442 11 2232 12244578999884 566665321 344444543 21
Q ss_pred ----------EEE-EcccCCCceEEEEEcC-CCcEEEEEe
Q 012410 295 ----------LME-VSRTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 295 ----------~l~-~l~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
..+ ...|| ..+..++|.| +|+++++-.
T Consensus 183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 011 11233 3477899999 889888865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.015 Score=59.40 Aligned_cols=181 Identities=14% Similarity=0.219 Sum_probs=119.4
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC----------------CC--ceeEEEEEc--CCCcEEEEEee-
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS----------------SS--HVPLKILSI--EDGTVLKVFYH- 258 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~----------------s~--d~tIklWdi--~tG~~l~tl~~- 258 (464)
+|++ .-++-+.|+|+ +|+.+..+....+..|...| .. +.+|.++++ ++++ |+.+..
T Consensus 43 ii~t-~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~ 119 (355)
T 3amr_A 43 LITT-NKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP 119 (355)
T ss_dssp EEEE-ETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred EEEE-cCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence 4444 34567899999 89999888765555544433 24 689999977 5665 555522
Q ss_pred -----C-CcceeeEEE--EccCCC-eEEEEeCCCeEEEEEC-------CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 259 -----L-LHRNKKVDF--IEQFNE-KLLVKQENENLQILDV-------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 259 -----~-~~~~~~V~F--~~~~~~-~lla~s~D~tIkIWDv-------~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
. ......+++ ++..+. ++++...++.+..|++ .++++++++.-. ..+..++..++...|.-+-
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEec
Confidence 1 134466777 554343 3555778899999998 344667776644 3688888888777776776
Q ss_pred -CCeEEEEeCC------CceEEEec-cCCCCcCCCCeeEEEE--CCCCC-EEEEEecCCCccccccCCCCeEEEEeCC-C
Q 012410 323 -NRTVAVWNFR------GELVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSIL-T 390 (464)
Q Consensus 323 -D~TIklWd~~------Ge~l~tl~-gH~~~~~~~~v~svaf--SpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~-t 390 (464)
|.-|-..|.+ ++++..+. +|... .+..+++ .+||+ +|+..|. .+.+.-++|.+ +
T Consensus 199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~a----DvEGLai~~~~~g~gyLivSsQ----------G~~s~~Vydr~~~ 264 (355)
T 3amr_A 199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTR----DIEGLTIYYAADGKGYLMASSQ----------GNSSYAIYDRQGK 264 (355)
T ss_dssp TTTEEEEEECSTTSCSCCEEEEEBSSSSBCS----CEEEEEEEECGGGCEEEEEEEG----------GGTEEEEEESSTT
T ss_pred ccceEEEEeCCcCCCCCceEEEEecCCcccc----CcceEEEEecCCCCEEEEEEcC----------CCCEEEEEECCCC
Confidence 7554444433 45666653 44332 1677877 78877 6666664 27899999996 7
Q ss_pred CeEEEEEc
Q 012410 391 GKCLAKIN 398 (464)
Q Consensus 391 G~cl~tl~ 398 (464)
.+-+..|.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 88888885
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.078 Score=52.22 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=126.9
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
....|.|.+.++.|.. ++... +.|...++..+... ..+.. .-+..|..++++..+|.+..+-+..+.|
T Consensus 36 ~~~~ld~d~~~~~lyw--~D~~~-------~~I~r~~~~g~~~~--~~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYW--SDVSE-------EAIKRTEFNKTESV--QNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEE--EETTT-------TEEEEEETTSSSCC--CEEEE-ECCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEE--EECCC-------CcEEEEEccCCCce--EEEEc-CCCCCccEEEEEcCCCeEEEEECCCCEE
Confidence 4678899987666666 22332 45666665444211 11222 2345688999984477777777778899
Q ss_pred EEEeCCCCeEEEEec---CCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeE
Q 012410 211 KVFDLKNYTMLYSIS---DKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 211 KlWdl~tg~~l~tl~---~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~l 276 (464)
.+.++.. ....++. -..-..|++.|. ....|...+.. |+...++- .....-..++|.+. +++|
T Consensus 104 ~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~-~~~l 180 (318)
T 3sov_A 104 EVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYE-EQKL 180 (318)
T ss_dssp EEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETT-TTEE
T ss_pred EEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEecc-CCEE
Confidence 9999864 3333332 245788888762 12456666654 55444442 22344478999884 5677
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
..+ +..+.|...|+..+.......+....|.++++. ++.++.+-. .+.|...|. +|+.++++...
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred EEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence 666 478899999976544444444456778999885 567777776 899999998 79887777654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.098 Score=58.45 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=122.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
..+..|+|.+.+..|.. ++... +.|...++........ ..+.. ..+..|..||++..++++..+-+..+
T Consensus 424 ~~~~gl~~d~~~~~lY~--sD~~~-------~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYW--SDLSQ-------RMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp SSEEEEEEETTTTEEEE--EETTT-------TEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CceEEEeecccCCeeEE--eeccc-------eeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCC
Confidence 44788999987666666 22333 3565556543211111 11222 24567889999844456666667777
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe--CCCeEE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQ 286 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--~D~tIk 286 (464)
.|.+.++. |....++- ...+..-..|++.|. ++.|..+. ....|.
T Consensus 494 ~I~v~~ld-G~~~~~l~-------------------------------~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 494 TVSVADTK-GVKRKTLF-------------------------------RENGSKPRAIVVDPV-HGFMYWTDWGTPAKIK 540 (791)
T ss_dssp EEEEEETT-SSSEEEEE-------------------------------ECTTCCEEEEEEETT-TTEEEEEECSSSCEEE
T ss_pred eEEEEeCC-CCeEEEEE-------------------------------eCCCCCcceEEEecC-CCCEEEecCCCCCeEE
Confidence 88888764 33222221 001122345555552 34555443 235677
Q ss_pred EEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEE
Q 012410 287 ILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 287 IWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~L 363 (464)
..++..........+...+|..+++.|. ++++.+-. ...|..-|++|.-.+++- ++..+.. -.+|++ +++.|
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~---P~glav--~~~~l 615 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH---PFSLAV--FEDKV 615 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS---EEEEEE--ETTEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCC---CCEEEE--eCCEE
Confidence 7776544444444445578999999965 55666655 789999999877655553 3222211 245665 44444
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.-... ..++|..-|..+|+-+.++......|.
T Consensus 616 YwtD~----------~~~~I~~~dk~tG~~~~~l~~~l~~P~ 647 (791)
T 3m0c_C 616 FWTDI----------INEAIFSANRLTGSDVNLLAENLLSPE 647 (791)
T ss_dssp EEEET----------TTTEEEEEETTTCCCCEEEECSCSCCC
T ss_pred EEEEC----------CCCEEEEEeCCCCcceEEeecCCCCce
Confidence 43321 268898889889988888865443344
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.071 Score=53.30 Aligned_cols=131 Identities=10% Similarity=0.085 Sum_probs=77.1
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec-----CCCEeEEEEeCC--Cc-----------------
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----DKHVQEIKIRSS--SH----------------- 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~-----~~~V~~Vafs~s--~d----------------- 239 (464)
+.+|..++|+ |||+++++- .++.|+++| .+|+ .+..+. ......|+|+|+ .+
T Consensus 28 l~~P~~ia~~-pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPL-GGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEE-ETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEc-CCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4678899997 899987764 458898887 5676 233322 246889999885 11
Q ss_pred eeEEEEEcCCC-------cEE-EEEe-eCCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEECCCCc--
Q 012410 240 VPLKILSIEDG-------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDVRNAE-- 294 (464)
Q Consensus 240 ~tIklWdi~tG-------~~l-~tl~-~~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv~tg~-- 294 (464)
..|-.++...+ +.+ ..+. ...|.-..++|.|+ ++|.++..| +.|.-.|.. |+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence 33445555433 111 2233 22344578999884 566665322 344444433 22
Q ss_pred -------EEEEcccCCCceEEEEEcC-CCcEEEEEe
Q 012410 295 -------LMEVSRTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 295 -------~l~~l~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
......|| -.+..++|.| +|+++++-.
T Consensus 182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence 01112233 3477899999 899888865
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.099 Score=56.65 Aligned_cols=174 Identities=11% Similarity=0.080 Sum_probs=114.8
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+|..+ ....|+.-|+.+......+. -..+..|+|.+. ..+.|..+++..+.....+.........+|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44443 45678888998765444443 246789999873 335666666653333333332224457788
Q ss_pred EEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe--CCeEEEEeCCCceEEEeccCC
Q 012410 268 FIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 268 F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s--D~TIklWd~~Ge~l~tl~gH~ 343 (464)
+.+. ++.|..+ ...+.|.+-|+..+............|.++++.| +|.++.|-. ...|...+.+|.-...+-...
T Consensus 87 vD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~ 165 (628)
T 4a0p_A 87 VDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV 165 (628)
T ss_dssp EETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC
T ss_pred EEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC
Confidence 8663 5666665 4778999999765543333345567899999998 688888763 567888888887766665554
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
.| -+.|++.++++.|.-+-. ..+.|...|+..
T Consensus 166 ~~-----P~GlalD~~~~~LY~aD~----------~~~~I~~~d~dG 197 (628)
T 4a0p_A 166 GR-----ANGLTIDYAKRRLYWTDL----------DTNLIESSNMLG 197 (628)
T ss_dssp SS-----EEEEEEETTTTEEEEEET----------TTTEEEEEETTS
T ss_pred CC-----cceEEEccccCEEEEEEC----------CCCEEEEEcCCC
Confidence 45 579999998887765532 367888888743
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0023 Score=70.27 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=123.8
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC----CeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t----g~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
+..|..|+|++.++.+..+-...+.|+.+++.+ ......+.. .....||+.+ .....|.+.++.
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d- 483 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK- 483 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-
Confidence 355668999833555555556678899999875 121112211 2345677653 244678888886
Q ss_pred CcEEEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CC
Q 012410 250 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~ 324 (464)
|..++++- .....-..|++.|. ++.|..+. ..+.|...++...............+..++|+|+ ++++++-+ .+
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~-~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSS-SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEccC-CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence 44444443 22344578888774 46666653 2378888876443322233344567899999986 56666666 88
Q ss_pred eEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 325 TVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 325 TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
+|...|++|.-.+++... ...+| ..|++..+ .++++... .+.|...|..+|+-+++|.....
T Consensus 563 ~I~~~d~dG~~~~~~~~~~~~~~~P----~glavd~~-~lywtd~~-----------~~~V~~~d~~~G~~~~~i~~~~~ 626 (699)
T 1n7d_A 563 SISSIDVNGGNRKTILEDEKRLAHP----FSLAVFED-KVFWTDII-----------NEAIFSANRLTGSDVNLLAENLL 626 (699)
T ss_dssp EEEEECSSSSCCEEECCCSSSCSSC----CCCEEETT-EEEEECST-----------TTCEEEEETTTEEEEECCCTTCS
T ss_pred eEEEEccCCCceEEEEecCCcCCCc----eEeEEECC-EEEEEeCC-----------CCeEEEEEccCCCceEEeecCCC
Confidence 999999987655555421 11222 35666444 34444332 68999999999999988865333
Q ss_pred CCCc
Q 012410 403 SPKV 406 (464)
Q Consensus 403 ~~~~ 406 (464)
.|.+
T Consensus 627 ~P~~ 630 (699)
T 1n7d_A 627 SPED 630 (699)
T ss_dssp SCCC
T ss_pred CCcE
Confidence 3443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.17 Score=56.49 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCC----cEEEEEeeCCcceeeEEEEcc
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDG----TVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG----~~l~tl~~~~~~~~~V~F~~~ 271 (464)
....|+.-++...+....+. ...+..|+|.+. ....|..+++... .....+...+.....||+.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 34568888887655444343 456788888762 2345666666531 122223223345578888764
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEeccCC-CCc
Q 012410 272 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHL-LWH 346 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~gH~-~~~ 346 (464)
++.|..+ ...+.|.+.|+........+......|.+|++.|. |.++.|-. + ..|..-+++|...+++-... .|
T Consensus 482 -~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~- 559 (791)
T 3m0c_C 482 -HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW- 559 (791)
T ss_dssp -TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC-
T ss_pred -CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC-
Confidence 4566665 57899999997755544444455678999999986 77777765 4 78999999888777665433 34
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.|++.|++..|.-+-. ...+|...|+ .|.-.+++
T Consensus 560 ----P~GLavD~~~~~LYwaD~----------~~~~I~~~d~-dG~~~~~v 595 (791)
T 3m0c_C 560 ----PNGITLDLLSGRLYWVDS----------KLHSISSIDV-NGGNRKTI 595 (791)
T ss_dssp ----EEEEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEEE
T ss_pred ----ceEEEEecCCCeEEEEeC----------CCCcEEEEec-CCCceEEE
Confidence 579999987777665432 2578999997 45444444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.11 Score=56.27 Aligned_cols=196 Identities=10% Similarity=0.071 Sum_probs=128.2
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~tG~~l~ 254 (464)
+.|-.|+|+..+|.+..+...++.|..+++........+.. .....||+.+ .....|.+.++. |...+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEE
Confidence 45668999855677777777889999999875443333332 3567888854 234577777775 44444
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEE
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklW 329 (464)
++- ..+..-+.|++.|. ++.|..+. ....|...++.... ++++.....+|..+++.++ ++++.+-. .+.|...
T Consensus 116 ~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp EEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 443 33344588999874 56777764 35678778865544 3333345678999999996 45555555 8899999
Q ss_pred eCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 330 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 330 d~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|++|.-.+.+.+... + -..+++.. +.+.++-. ..++|..-|..+|+-...+....
T Consensus 194 d~dG~~~~v~~~~l~-~----P~glav~~-~~ly~tD~-----------~~~~I~~~dk~tg~~~~~l~~~~ 248 (628)
T 4a0p_A 194 NMLGLNREVIADDLP-H----PFGLTQYQ-DYIYWTDW-----------SRRSIERANKTSGQNRTIIQGHL 248 (628)
T ss_dssp ETTSCSCEEEEECCS-C----EEEEEEET-TEEEEEET-----------TTTEEEEEETTTCCSCEEEECSC
T ss_pred cCCCCceEEeeccCC-C----ceEEEEEC-CEEEEecC-----------CCCEEEEEECCCCCceEEEecCC
Confidence 997654455555433 3 34777754 34444432 26889999988898777776543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00091 Score=73.41 Aligned_cols=176 Identities=10% Similarity=0.026 Sum_probs=105.7
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCC----CcEEEEEeeCCcceeeEEEEcc
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~t----G~~l~tl~~~~~~~~~V~F~~~ 271 (464)
....|++-++.+++....+. ...+..|+|.+. ....|..+++.+ ......+.........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 34578888888766544443 345667787653 234566666653 1111111111123356776543
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEeccCCCCcC
Q 012410 272 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~gH~~~~~ 347 (464)
++.|..+ ...+.|.+.|+.......++......|..+++.|+ |.++.+-. . ++|...+++|...+++.......
T Consensus 464 -~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~- 541 (699)
T 1n7d_A 464 -HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW- 541 (699)
T ss_dssp -SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS-
T ss_pred -CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC-
Confidence 4566654 47789999997765555455545567899999985 56666654 3 78888888887666654332222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.|+|+|++..|.-+.. ..++|...|+. |.-.+++
T Consensus 542 ---PnGlavd~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 542 ---PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp ---CCCEEECTTTCCEEEEET----------TTTEEEEECSS-SSCCEEE
T ss_pred ---ccEEEEeccCCEEEEEec----------CCCeEEEEccC-CCceEEE
Confidence 468999998666554322 26789999974 4434444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.31 Score=52.64 Aligned_cols=269 Identities=11% Similarity=0.076 Sum_probs=145.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe-ccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i-~~G~~~~~ 176 (464)
+++..+-...+.|...+ .+|.....+-...-..-+.|++.|.+..|.. ++.... . +|+-. ..|....
T Consensus 96 ~~ly~~d~~~~~I~v~~-~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~--tD~g~~------~--~I~r~~~dG~~~~- 163 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSN-LDGSLRKVLFWQELDQPRAIALDPSSGFMYW--TDWGEV------P--KIERAGMDGSSRF- 163 (619)
T ss_dssp TEEEEEETTTTEEEEEE-TTSCSCEEEECSSCSCCCCEEEETTTTEEEE--EECSSS------C--EEEEEETTSCSCE-
T ss_pred CEEEEEeCCCCEEEEEE-CCCCCEEEEEeCCCCCCceEEEecCCCeEEE--eccCCC------C--EEEEEECCCCceE-
Confidence 66777777778898888 6676555553233344678999997655554 121111 1 23322 2333211
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeC-------CCceeEEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRS-------SSHVPLKILS 246 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~-------s~d~tIklWd 246 (464)
.+.. ..+.+|..+++++.++++..+-+....|...|+.. .-..++.. ..-..|++.. .....|...|
T Consensus 164 -~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 164 -IIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACN 240 (619)
T ss_dssp -EEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-CEEC---------CCCEEESSSEEEEECTTTCSEEEEE
T ss_pred -EEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-CccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEE
Confidence 1222 24678999999844566666666677888888854 33322211 1223444432 2445677777
Q ss_pred cCCCcEEEEEeeCCcceeeE-------------------------EEEcc-----------------C-------CC-eE
Q 012410 247 IEDGTVLKVFYHLLHRNKKV-------------------------DFIEQ-----------------F-------NE-KL 276 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V-------------------------~F~~~-----------------~-------~~-~l 276 (464)
..+|+.+..+......-..| ++..+ + .+ .|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 77776554443111111111 11100 0 01 23
Q ss_pred EEEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCee
Q 012410 277 LVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+.+. .+.|+..++.+++. +.........+.+++|.+ ++.++.+-. .+.|.-++.+|.-..++-...... ..
T Consensus 321 l~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~----p~ 395 (619)
T 3s94_A 321 LLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAH----PD 395 (619)
T ss_dssp EEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC----CC
T ss_pred EEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCC----cC
Confidence 3332 34666667766542 111112235688999997 677777776 899999999765444443222111 46
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+|+.+.+..|.-... ..++|.+-++ .|+-.++|
T Consensus 396 GlAvD~~~~~lY~tD~----------~~~~I~v~~~-~G~~~~~l 429 (619)
T 3s94_A 396 GIAVDWVARNLYWTDT----------GTDRIEVTRL-NGTMRKIL 429 (619)
T ss_dssp EEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEEE
T ss_pred ceEEecccCcEEEEeC----------CCCcEEEEeC-CCCeEEEE
Confidence 8999875554443321 3688998886 45444444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.028 Score=57.31 Aligned_cols=173 Identities=15% Similarity=0.235 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC--CC-e--EEEEe--C--CCeEEEEEC--CCCcEEEEcc------
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NE-K--LLVKQ--E--NENLQILDV--RNAELMEVSR------ 300 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~--~~-~--lla~s--~--D~tIkIWDv--~tg~~l~~l~------ 300 (464)
...-+.++|+ +|+.++.+.. .+..-|+..|.+ ++ + +++.+ . +++|.++++ .++++...-.
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~ 124 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA 124 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence 3457899999 7999999874 456677766632 12 2 44444 4 689999955 6676444311
Q ss_pred cCCCceEEEEE--cCC-Cc--EEEEEeCCeEEEEeC--------CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 301 TEFMTPSAFIF--LYE-NQ--LFLTFRNRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 301 gh~~~v~sv~F--spd-gq--llaS~sD~TIklWd~--------~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.....+..+++ +|. |+ .+++..++.+..|++ +++++++|.--.. +..++..|....|.-+-
T Consensus 125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq------~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ------TEGMAADDEYGRLYIAE 198 (355)
T ss_dssp CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC------EEEEEEETTTTEEEEEE
T ss_pred CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC------cceEEEcCCCCeEEEec
Confidence 22257888888 774 54 333333999999987 2367888875432 67888888888887764
Q ss_pred cCCCccccccCCCCeEEEEeCC-----CCeEEEEEc-cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEE
Q 012410 368 KAEPEDQWMEGSAGSINVSSIL-----TGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 441 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~-----tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 441 (464)
+ |.-|.-.|.. +++.+..+. +|- -+.+..|
T Consensus 199 E-----------d~GIw~~da~p~~~~~~~~v~~~~~g~l---------------------------------~aDvEGL 234 (355)
T 3amr_A 199 E-----------DEAIWKFSAEPDGGSNGTVIDRADGRHL---------------------------------TRDIEGL 234 (355)
T ss_dssp T-----------TTEEEEEECSTTSCSCCEEEEEBSSSSB---------------------------------CSCEEEE
T ss_pred c-----------cceEEEEeCCcCCCCCceEEEEecCCcc---------------------------------ccCcceE
Confidence 3 5334333432 455665542 111 0167777
Q ss_pred EE--cCCCC-EEEEee-CCCcEEecc
Q 012410 442 FY--DEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 442 af--spDg~-~LaSgs-~DgtVrlWd 463 (464)
++ .+||+ +|+..| .+.+..|+|
T Consensus 235 ai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 235 TIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 77 67777 455444 677888876
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.12 Score=55.94 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=123.5
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEecC--CCEeEEEEeC---------CCceeEEEEEcCCCcE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--KHVQEIKIRS---------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~tG~~ 252 (464)
++.|..|+|+..+|.+..+-...+.|..+++..... ...+.. .....||+.+ .....|.+-+.. |+.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCC
Confidence 456779999855676666766778899999875532 223332 5688899965 244678888886 555
Q ss_pred EEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEE
Q 012410 253 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVA 327 (464)
Q Consensus 253 l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIk 327 (464)
.+++- ..+..-+.|++.|. ++.|..+. ....|..-++..............+|..+++.|+ ++++.+-. .++|.
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp CEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 55554 33455589999884 56777765 3456666675543333333345678999999985 55666655 88999
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.-|++|.-.+++..-...+| ..|++..| .+..+-. ..++|..-|..+|+-+..+...
T Consensus 197 ~~~~dG~~~~~~~~~~~~~P----~gi~~~~~-~ly~td~-----------~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 197 KSNLDGTNRQAVVKGSLPHP----FALTLFED-ILYWTDW-----------STHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp EESSSCCEEC---------C----CCEEESSS-EEEEECT-----------TTCSEEEEESSSCCCCEECCSC
T ss_pred EecCCCCccEEEEeCCCCCc----eEEEEeCC-EEEEecC-----------CCCEEEEEECCCCcccEEEecC
Confidence 99998766555433222333 36777666 4444322 2688999998898877666543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.054 Score=54.17 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=66.8
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEc---ccCCCceEEEEEcCC----CcEEEEEe----C----C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVS---RTEFMTPSAFIFLYE----NQLFLTFR----N----R 324 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l---~gh~~~v~sv~Fspd----gqllaS~s----D----~ 324 (464)
..-+.++|.|+ +.|+++..++.|+++| .+|+ .+..+ ......+..++|+|| |.++++-+ + .
T Consensus 29 ~~P~~ia~~pd--G~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGG--GRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEET--TEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCC--CeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44589999995 7899998889999998 5676 22221 122356899999997 78877754 2 5
Q ss_pred eEEEEeCCCc---------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 325 TVAVWNFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 325 TIklWd~~Ge---------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.|..++.++. ++..+.... .|. -+.++|.|||.+.++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~---~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHN---GGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCS-SCC---CCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCC-CcC---CceEEECCCCcEEEEEC
Confidence 6777776543 223343211 111 35799999999998854
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.32 Score=47.06 Aligned_cols=182 Identities=8% Similarity=0.237 Sum_probs=108.1
Q ss_pred CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE---EEEcc------cCCCce
Q 012410 238 SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL---MEVSR------TEFMTP 306 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~---l~~l~------gh~~~v 306 (464)
.+..|-..|.+ |++++++.- .....-.|++.+ ++.+++++ .++.+-+.++..... +.... ......
T Consensus 47 ~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~ 123 (255)
T 3qqz_A 47 KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGF 123 (255)
T ss_dssp TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCC
T ss_pred CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCc
Confidence 45567777887 999988752 113446788765 35665654 667888888765431 22221 123345
Q ss_pred EEEEEcCCCcEEEEEe-CCeEEEEeCCC----ceEEEecc----CCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 307 SAFIFLYENQLFLTFR-NRTVAVWNFRG----ELVTSFED----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~TIklWd~~G----e~l~tl~g----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..+++.|+++.|..+. .....||.++| ..++.+.. ......+ +.+++|.|.-..|.--|.
T Consensus 124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d--~S~l~~dp~tg~lliLS~--------- 192 (255)
T 3qqz_A 124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD--VSGAEFNQQKNTLLVLSH--------- 192 (255)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC--CCEEEEETTTTEEEEEET---------
T ss_pred ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC--ceeEEEcCCCCeEEEEEC---------
Confidence 8999999997776676 44556666543 23333322 1111222 679999997665555554
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
+.+.+-..|. +|+-+..+.=..+ .+ ...+...+=..|+|+|+|+ ||-.|+-.
T Consensus 193 -~s~~L~~~d~-~g~~~~~~~L~~g-----------~~--------------~l~~~~~qpEGia~d~~G~-lyIvsE~n 244 (255)
T 3qqz_A 193 -ESRALQEVTL-VGEVIGEMSLTKG-----------SR--------------GLSHNIKQAEGVAMDASGN-IYIVSEPN 244 (255)
T ss_dssp -TTTEEEEECT-TCCEEEEEECSTT-----------GG--------------GCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred -CCCeEEEEcC-CCCEEEEEEcCCc-----------cC--------------CcccccCCCCeeEECCCCC-EEEEcCCc
Confidence 3688888884 6886655422111 00 0001112567899999997 66668777
Q ss_pred cEEe
Q 012410 458 LVHV 461 (464)
Q Consensus 458 tVrl 461 (464)
.+..
T Consensus 245 ~~y~ 248 (255)
T 3qqz_A 245 RFYR 248 (255)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.13 Score=49.85 Aligned_cols=107 Identities=7% Similarity=0.145 Sum_probs=75.6
Q ss_pred CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-Cc
Q 012410 260 LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GE 334 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge 334 (464)
......++|.|+ +++|.+ ..+++.|-..|.. |+.++.+. +-..-+..|++.++|+++++.- ++.+-+.++ . ++
T Consensus 26 ~~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 355688999885 566766 5689999999987 88887652 3335688999999999888876 888989887 3 54
Q ss_pred --eEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 335 --LVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 335 --~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.+.... +......+.....+|+.|+++.|..+++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 223332 1111112334689999999988888775
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.05 Score=54.20 Aligned_cols=100 Identities=8% Similarity=0.061 Sum_probs=66.1
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE--EEc---ccCCCceEEEEEcCC----CcEEEEEe-C-----Ce
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--EVS---RTEFMTPSAFIFLYE----NQLFLTFR-N-----RT 325 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l--~~l---~gh~~~v~sv~Fspd----gqllaS~s-D-----~T 325 (464)
..-+.++|.|+ +.++++..++.|++++ +|+.. ..+ ......+..++|+|| +.++++-. + ..
T Consensus 31 ~~P~~ia~~pd--G~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPD--GGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTT--SCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCC--CeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 33478999885 6788888889999998 56532 211 122357899999998 77777766 4 67
Q ss_pred EEEEeCC-Cc------eEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 326 VAVWNFR-GE------LVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 326 IklWd~~-Ge------~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|..++.+ ++ ++..+..+ ...|. -..++|.|||.+.++-+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~---~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHS---GGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCC---CCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcC---CceEEECCCCCEEEEEC
Confidence 7778775 32 22334410 11111 35799999999888854
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.55 Score=47.42 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=78.7
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec------CCCEeEEEEeCC--Ccee------------
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIKIRSS--SHVP------------ 241 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~------~~~V~~Vafs~s--~d~t------------ 241 (464)
-+.+|..++|. |||.+|++--..+.|++++..+|+. +..+. ......|+|+|+ .++.
T Consensus 30 gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 35678899997 8999998776688999998777764 23332 346789999885 2222
Q ss_pred EEEEEcCCC----------cEE-EEEe-eCCcceeeEEEEccCCCeEEEE-eCC-------------CeEEEEECCCC--
Q 012410 242 LKILSIEDG----------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNA-- 293 (464)
Q Consensus 242 IklWdi~tG----------~~l-~tl~-~~~~~~~~V~F~~~~~~~lla~-s~D-------------~tIkIWDv~tg-- 293 (464)
|--+....+ +.+ ..+. ...|.-..++|.|+ ++|.++ ++. +.|-=.|....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD--G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD--KMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT--SCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC--CCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 333333321 122 2232 22355578999884 566664 211 22222233211
Q ss_pred ------cEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 294 ------ELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 294 ------~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
.......||- -+..++|.|+|+++++=-
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence 0011122443 467899999999988754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.25 Score=50.07 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCeEEEEECCCC--c--EEEEcccC-CCceEEEEEcCCCcEEEEEe----C------------CeEEEEeCC-CceEEE
Q 012410 281 ENENLQILDVRNA--E--LMEVSRTE-FMTPSAFIFLYENQLFLTFR----N------------RTVAVWNFR-GELVTS 338 (464)
Q Consensus 281 ~D~tIkIWDv~tg--~--~l~~l~gh-~~~v~sv~FspdgqllaS~s----D------------~TIklWd~~-Ge~l~t 338 (464)
.+.+|.||++..+ . .+....+. ...+..+++.++|.+.++.. | .+=+||-++ |++..-
T Consensus 137 ~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~ 216 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 216 (355)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE
T ss_pred CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe
Confidence 4678888776553 2 23344443 46789999999999988854 2 234666663 554433
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.+ ... -|.|+|||||++|.-+.. ..++|..+++.
T Consensus 217 ~~~-l~~-----pNGia~spDg~~lYvadt----------~~~~I~~~~~~ 251 (355)
T 3sre_A 217 AEG-FDF-----ANGINISPDGKYVYIAEL----------LAHKIHVYEKH 251 (355)
T ss_dssp EEE-ESS-----EEEEEECTTSSEEEEEEG----------GGTEEEEEEEC
T ss_pred ecC-Ccc-----cCcceECCCCCEEEEEeC----------CCCeEEEEEEC
Confidence 333 222 489999999998876542 26889999985
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.33 Score=49.08 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=102.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-C--CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-S--SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-s--~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
.+|.+++|++.+|.++.|.-..++|-.||...+..... . |.. + .+....
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~--------~~~~s~~g~~~~~------------------- 64 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V--------IDGASSNGDGEQQ------------------- 64 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C--------CTTTCCSSCCSEE-------------------
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e--------cCCccccCCCcce-------------------
Confidence 45668999866888888888999999999875543222 1 110 0 000000
Q ss_pred eeeEEE---EccCCCeEEEEe--------------CCCeEEEEECC---CCcEEE--Eccc-----------CCCceEEE
Q 012410 263 NKKVDF---IEQFNEKLLVKQ--------------ENENLQILDVR---NAELME--VSRT-----------EFMTPSAF 309 (464)
Q Consensus 263 ~~~V~F---~~~~~~~lla~s--------------~D~tIkIWDv~---tg~~l~--~l~g-----------h~~~v~sv 309 (464)
...|.+ -|. ++|++.. .+.-|..+|+. +|+.+. .|.+ ....+..+
T Consensus 65 ~sGl~~~~~D~~--grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 65 MSGLSLLTHDNS--KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEESSSSSC--CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeEEEEeccCCC--CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 122223 121 3444421 26778889998 787654 2322 22247789
Q ss_pred EEcCCCcEEEEEe-C-CeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 310 IFLYENQLFLTFR-N-RTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 310 ~FspdgqllaS~s-D-~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+.-++|+..++++ - +.|-..+.+|+.+..+. ........+..+.|+++|||++|+... + ++.+--.
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~----------~-~g~L~~f 211 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG----------G-PRALTAF 211 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES----------S-SSSEEEE
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc----------C-CCeEEEE
Confidence 9999999999999 7 87766676788655443 111111223467999999999888763 2 7888888
Q ss_pred eCC
Q 012410 387 SIL 389 (464)
Q Consensus 387 di~ 389 (464)
|+.
T Consensus 212 D~~ 214 (334)
T 2p9w_A 212 DVS 214 (334)
T ss_dssp ECS
T ss_pred cCC
Confidence 876
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.39 Score=48.57 Aligned_cols=158 Identities=11% Similarity=0.132 Sum_probs=100.3
Q ss_pred eeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccC-------CCceEEEEE---cCCCcEEEEEe----------
Q 012410 264 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE-------FMTPSAFIF---LYENQLFLTFR---------- 322 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~F---spdgqllaS~s---------- 322 (464)
.+++|.+. .+.+..++ ..++|-.||...+...++...+ ...+..+.+ -|+|++++...
T Consensus 16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 56777663 57888888 8999999998877655543222 124678999 48999998532
Q ss_pred ----CCeEEEEeCC----CceEEE--eccCCCC-------cCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEE
Q 012410 323 ----NRTVAVWNFR----GELVTS--FEDHLLW-------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSIN 384 (464)
Q Consensus 323 ----D~TIklWd~~----Ge~l~t--l~gH~~~-------~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D-gtIk 384 (464)
++.|..+|+. |+.+.. |.+.... .+ ...+.+++-++|+.-++++. - +.|-
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~-~~~nDvavD~~GnaYVt~s~-----------~~~~I~ 162 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP-FGVVQSAQDRDGNSYVAFAL-----------GMPAIA 162 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC-EEEEEEEECTTSCEEEEEEE-----------SSCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc-cCCceeEECCCCCEEEeCCC-----------CCCeEE
Confidence 5778899977 777643 3322210 00 01579999999999999886 4 5555
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+. .|+-+..+.-.. |. .. ..-....++|+|||++|+.....|.+.-.|
T Consensus 163 rV~p-dG~~~~~~~~~~--~~--~~------------------------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 163 RVSA-DGKTVSTFAWES--GN--GG------------------------QRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EECT-TSCCEEEEEECC--CC--SS------------------------SCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred EEeC-CCCEEeeeeecC--CC--cc------------------------cccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 5552 455444332111 00 00 001456789999999888776677765444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.15 E-value=1.2 Score=44.17 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=76.4
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEE---EEec------CCCEeEEEEeCC--Cc-------------
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML---YSIS------DKHVQEIKIRSS--SH------------- 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l---~tl~------~~~V~~Vafs~s--~d------------- 239 (464)
+.+|..++|+ |||+ ++++- ..+.|++++. +|... ..+. ......|+|+|+ .+
T Consensus 17 l~~P~~i~~~-pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFL-PDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEEC-STTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEc-CCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 5678899997 8999 77754 5688999884 45432 1111 245789999884 11
Q ss_pred ----eeEEEEEcCCC--c--EEEE-Eee------CCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEEC
Q 012410 240 ----VPLKILSIEDG--T--VLKV-FYH------LLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDV 290 (464)
Q Consensus 240 ----~tIklWdi~tG--~--~l~t-l~~------~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv 290 (464)
..|--++...+ + -.++ +.. ..|.-..++|.|+ +.|.++..| +.|.-.|.
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 23444444332 1 1111 211 1244578999885 577776433 34544564
Q ss_pred CCC------------cEEEEc-ccCCCceEEEEEcC-CCcEEEEEe
Q 012410 291 RNA------------ELMEVS-RTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 291 ~tg------------~~l~~l-~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
... ...+++ .|| -.++.++|.| +|+++++-.
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence 422 011111 233 3588999999 898888754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.12 Score=52.30 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEE
Q 012410 295 LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISY 366 (464)
Q Consensus 295 ~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~--l~tl~gH~~~~~~~~v~svafSpD----g~~LaSg 366 (464)
.++++......+++++|.|||.+|++-. .++|++++. +|+. +..+..- ......-...|+|+|| |.+.+++
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v-~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV-SPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-CCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce-eecCCCCceeeEeccccccCCEEEEEE
Confidence 3455556667899999999999999999 999999987 4654 2222100 0000112578999995 7777777
Q ss_pred ec
Q 012410 367 CK 368 (464)
Q Consensus 367 s~ 368 (464)
+.
T Consensus 102 t~ 103 (347)
T 3das_A 102 TS 103 (347)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.47 Score=48.03 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=54.2
Q ss_pred CCCeEEEEECCC--CcEEE-Eccc-----CCCceEEEEEcC--CCc--EEEEEe---CCeEEEEeC-C-Cc---eEEEec
Q 012410 281 ENENLQILDVRN--AELME-VSRT-----EFMTPSAFIFLY--ENQ--LFLTFR---NRTVAVWNF-R-GE---LVTSFE 340 (464)
Q Consensus 281 ~D~tIkIWDv~t--g~~l~-~l~g-----h~~~v~sv~Fsp--dgq--llaS~s---D~TIklWd~-~-Ge---~l~tl~ 340 (464)
.+|.|-++|..+ ++..+ .+.+ ....+..+.+-+ ||. +++.-. +.+|.||++ . +. ++.+++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688899999873 34322 1222 223677888765 453 666633 579999998 2 33 455777
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+.... ..|.+++.|||.+.++..
T Consensus 161 g~~~~----~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 161 HKLLP----SVNDIVAVGPEHFYATND 183 (355)
T ss_dssp CTTCS----SEEEEEEEETTEEEEEES
T ss_pred cCCCC----CCceEEEeCCCCEEecCC
Confidence 65433 268999999999998864
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.39 Score=47.71 Aligned_cols=101 Identities=9% Similarity=0.097 Sum_probs=62.0
Q ss_pred cceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCcEEEEc-------ccCCCceEEEEEcC----CCcEEEEEe-C----
Q 012410 261 HRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLY----ENQLFLTFR-N---- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~~l~~l-------~gh~~~v~sv~Fsp----dgqllaS~s-D---- 323 (464)
..-+.++|.|+ +. ++++..++.|+++|. .|+..+.+ ......+..++|+| ++.+.++-+ .
T Consensus 18 ~~P~~i~~~pd--G~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPD--NHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECST--TCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCC--CCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 44589999885 56 888888899999984 45432211 11224578999999 488888855 2
Q ss_pred ---CeEEEEeCC-C--ce------EEEeccC-CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 ---RTVAVWNFR-G--EL------VTSFEDH-LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ---~TIklWd~~-G--e~------l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..|.-++.+ + ++ +..+... ...|. -..++|.|||.+.++-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~---~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF---GGRLVFDGKGYLFIALG 148 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC---CCCEEECSSSEEEEEEC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc---CccEEECCCCcEEEEEC
Confidence 245555553 2 11 1122210 11121 35799999998888764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.43 E-value=1.7 Score=44.94 Aligned_cols=102 Identities=7% Similarity=0.132 Sum_probs=64.8
Q ss_pred cceeeEEEEccCCCeEEEEeCCC-eEEEEECCCCcEEE--Eccc------CCCceEEEEEcC----CCcEEEEEeC----
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELME--VSRT------EFMTPSAFIFLY----ENQLFLTFRN---- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~-tIkIWDv~tg~~l~--~l~g------h~~~v~sv~Fsp----dgqllaS~sD---- 323 (464)
..-+.++|.|+ +.|+++...+ .|++++..+|+... .+.. ....+..++|+| ++.+.++-+.
T Consensus 27 ~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPD--NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCC--CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45589999885 7788887664 79999876676432 2321 234577999999 6888887651
Q ss_pred ---------CeEEEEeCC-C--c------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 ---------RTVAVWNFR-G--E------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ---------~TIklWd~~-G--e------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..|.-++.+ + + ++..+.. ...|. ...++|.|||.+.++-+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~---~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQ---SGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCC---EEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCC---CCeEeECCCCeEEEEECC
Confidence 234444442 2 1 1222332 11222 578999999999998653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.19 E-value=1.6 Score=45.82 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=93.7
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC----CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCce-------
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGEL------- 335 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh----~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~------- 335 (464)
|....|..+... .|+.||.=++..+.--+++... +..+..+..||+|.+||-.++.+|.|-.+ .+.-
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHH
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccc
Confidence 444444444444 3588888887744333333322 34677899999999999999999999887 3421
Q ss_pred -----EEEeccCCCCc-CCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCe--EEEEEccCCCCC
Q 012410 336 -----VTSFEDHLLWH-PDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKINATNCSP 404 (464)
Q Consensus 336 -----l~tl~gH~~~~-~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--cl~tl~gh~~~~ 404 (464)
.+++.=....+ +...|..+-|+|-| ..|+.=-. |++||+||+.... -. +|+-..+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts-----------D~~Ir~yDl~~s~~~P~-~L~k~~~-- 171 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE-----------DDTITMFDILNSQEKPI-VLNKPNN-- 171 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET-----------TSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec-----------CCEEEEEEcccCCCCCc-chhcccc--
Confidence 12332110000 01128889999954 35555443 9999999997522 22 3431110
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee--CCCcEE
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVH 460 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVr 460 (464)
.-.+ .. -...|.+++|+++|=+||..+ +.|-|.
T Consensus 172 -------------------~fg~---d~-~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 172 -------------------SFGL---DA-RVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp -------------------EEES---CS-SCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred -------------------ccCC---Cc-ccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 0000 00 114899999999999999966 888774
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.48 Score=49.18 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEeC-CeEEEEeC-CCce--EEEeccCCC-CcCCCCeeEEEECC----CCCEEEEE
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF-RGEL--VTSFEDHLL-WHPDCNTNNIYITS----DQDLIISY 366 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~sD-~TIklWd~-~Ge~--l~tl~gH~~-~~~~~~v~svafSp----Dg~~LaSg 366 (464)
++++......+++++|.|||+++++-.. +.|.+++. +|+. +..+..-.. .........|+|+| ++.+.+++
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3444444567999999999999999884 57998887 4664 333432110 00011256899999 67777777
Q ss_pred ec
Q 012410 367 CK 368 (464)
Q Consensus 367 s~ 368 (464)
+.
T Consensus 99 s~ 100 (454)
T 1cru_A 99 TF 100 (454)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.41 Score=50.08 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=48.9
Q ss_pred EEEEcccCCCceEEEEEcCCCc--EEEEEeCCeEEEEeCCCce----EEEeccCCCC----cCCCCeeEEEECCC----C
Q 012410 295 LMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFRGEL----VTSFEDHLLW----HPDCNTNNIYITSD----Q 360 (464)
Q Consensus 295 ~l~~l~gh~~~v~sv~Fspdgq--llaS~sD~TIklWd~~Ge~----l~tl~gH~~~----~~~~~v~svafSpD----g 360 (464)
+++++......|++++|.|||. +|++-..+.|++++.+|.. +..+..-... ...--...|+|+|| +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 4455555557899999999995 8888779999999875542 2222211000 00012568999997 8
Q ss_pred CEEEEEec
Q 012410 361 DLIISYCK 368 (464)
Q Consensus 361 ~~LaSgs~ 368 (464)
.+.++++.
T Consensus 85 ~lYv~yt~ 92 (463)
T 2wg3_C 85 KLYVSYTT 92 (463)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 88888875
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=93.53 E-value=1.8 Score=49.19 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=33.6
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+.+++.++|..+|++-|. |+++||||+.+|+|+++..
T Consensus 238 ~~~~~~~~~~~~lftl~~-----------D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEET-----------TCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEEC-----------CCEEEEEECCCCCeEeeec
Confidence 677888899999999997 9999999999999999864
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.81 E-value=1.7 Score=43.81 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=62.1
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCC---C-E-----------eEEEEeCCCceeEEEEEcCCCcEEEEEeeC-Ccceee
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDK---H-V-----------QEIKIRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKK 265 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~---~-V-----------~~Vafs~s~d~tIklWdi~tG~~l~tl~~~-~~~~~~ 265 (464)
.-++.|+.+--.|.++|+.+-++... . + .-+.+.|..|+.|..++.++|.....+.-. +-....
T Consensus 14 ~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP 93 (339)
T 2be1_A 14 IAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSP 93 (339)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccc
Confidence 33555666666666666665554421 1 1 123345678999999999999666555410 000111
Q ss_pred EEEEc----------cCCCeEEEEeCCCeEEEEECCCCcEEEEccc
Q 012410 266 VDFIE----------QFNEKLLVKQENENLQILDVRNAELMEVSRT 301 (464)
Q Consensus 266 V~F~~----------~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g 301 (464)
+.+.. ..++.+.+++.++++.-.|++||+.+..+..
T Consensus 94 ~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 94 LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 22100 0257888999999999999999999987764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=12 Score=39.60 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=107.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL-- 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~-- 259 (464)
+.-. +|..++||==+ ..++.|+|+++-+.+++.. .+.|-=-++ ++. .+..|.-|+++. -+..+.|..|
T Consensus 70 sAIM-nP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 70 SAIM-NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp EEEE-CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred eeee-CCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchh
Confidence 4445 48888988765 6799999999999998765 333322222 332 556788888863 3566777632
Q ss_pred CcceeeEEEEccCCCeEEE--E--e----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC----cEEEEEe-C---
Q 012410 260 LHRNKKVDFIEQFNEKLLV--K--Q----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN----QLFLTFR-N--- 323 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla--~--s----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg----qllaS~s-D--- 323 (464)
+....=+.+..+.+++.++ | + -.|.++|+.++.+. -+.+.||...--+ |-.+| ..|.++. -
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE--EECTTCSSEEEEEEEEECSTT
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE--EecCCCCCCceEEEEEEecCC
Confidence 2222334443333344332 2 2 34788999976554 5677888432211 22333 2233433 2
Q ss_pred -CeEEEEeC-CC-ceEEEecc-------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 324 -RTVAVWNF-RG-ELVTSFED-------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 324 -~TIklWd~-~G-e~l~tl~g-------H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+.+.|-++ +. +--..|.. -.....|..| ++.+|+.-.+|.--.+ -|.|.|.|++||.|
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK-----------~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTC 292 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEET-----------TSEEEEEETTTCCE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEec-----------CceEEEEeccccee
Confidence 46666665 11 00011110 0000011112 4555665666655555 79999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
+..=+=.+
T Consensus 293 i~~nrIs~ 300 (494)
T 1bpo_A 293 IYMNRISG 300 (494)
T ss_dssp EEEEECCS
T ss_pred eeeecccC
Confidence 98755443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=1.3 Score=42.77 Aligned_cols=107 Identities=9% Similarity=0.068 Sum_probs=65.7
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeCC---Cce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~~---Ge~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
...+..++|.|||.+.|. +++ +||-.+ ++. ..+--|...|.. -..++|-|+|.+.++ +
T Consensus 40 w~~~~~laf~P~G~LYaV-~~G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~---F~a~~fD~~G~LYav-~------- 105 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV-LND--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQ---FQFLFFDPNGYLYAV-S------- 105 (236)
T ss_dssp CTTCSEEEECTTSCEEEE-ETT--EEEEESCCCSTTCCHHHHCEEEECSCGGG---CSEEEECTTSCEEEE-E-------
T ss_pred cccceeEEECCCccEEEE-eCC--eEEEECCCCCCcccccccccEeccccccc---ceEEEECCCCCEEEe-C-------
Confidence 345669999999999998 766 466642 111 123334444432 368999999999998 3
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccc-ccc-ccccCEEEEEEcCCCCEEEE
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-TVG-EALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~V~slafspDg~~LaS 452 (464)
||.|.-|+-.+..+ ..|.-.+ .++ ...+.+..|+|+|||.+-|-
T Consensus 106 -----dG~iyr~~pP~~~~-----------------------------~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 106 -----KDKLYKASPPQSDT-----------------------------DNWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp -----TTEEEEESCCCSTT-----------------------------CCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred -----CCEEEEeCCCcCCC-----------------------------CceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 78887666322111 1111111 111 23348899999999995555
Q ss_pred eeCCCcE
Q 012410 453 GNRHGLV 459 (464)
Q Consensus 453 gs~DgtV 459 (464)
. |+.+
T Consensus 152 ~--dg~l 156 (236)
T 1tl2_A 152 H--GQQF 156 (236)
T ss_dssp E--TTEE
T ss_pred e--CCcE
Confidence 4 7765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.88 E-value=10 Score=36.90 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=64.8
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
...|...++..++. ..|... ...+|++ .+++|.-.. .+..|..-++...+ .+.+..+.. .+|+|+
T Consensus 87 ~~~Iy~i~~dg~~~-~~l~~~----~~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 87 RNSLCRIKRNGHGS-TVLDPD----PCIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp SEEEEEEETTSCCC-EEEECS----CEEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEE
T ss_pred CCeEEEEeCCCCcc-eEeecC----CccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEE
Confidence 45788888886653 334321 2235666 356776654 44566666765444 344443422 457889
Q ss_pred CcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 315 NQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 315 gqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|+.|.=.+ ..+|.+-+++|.-.+.+.... . ...++|+|++|+=..
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-------~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYDCN-------C-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEECSC-------E-EEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeCCC-------c-cceeeecCCEEEEEE
Confidence 98887554 568888888765545543221 2 234679999997543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=6.3 Score=37.88 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=59.1
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-------EEEcc-cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 331 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~-gh~~~v~sv~FspdgqllaS~sD~TIklWd~- 331 (464)
+....++|.| + +.|-+- .++.+.--+..+++. .++-. +..+ -.++.|-|+|.+.++ +|+.|-=|+-
T Consensus 41 ~~~~~laf~P-~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSP-G-GELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECT-T-SCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ccceeEEECC-C-ccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 4557888888 3 445444 555555555545221 11111 1111 357889999999999 8898877775
Q ss_pred C-Cce--E--EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 332 R-GEL--V--TSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 332 ~-Ge~--l--~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
+ |.- + .+.-+...|-. +..|+|.|||.+-|-.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~---~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSG---FKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGG---EEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCCc---eEEEEECCCceEEEEe
Confidence 3 221 0 12223344532 7899999999998765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.54 E-value=6.5 Score=40.94 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=64.7
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcc-----c----CCCceEEEEEcCC----CcEEEEEe-C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSR-----T----EFMTPSAFIFLYE----NQLFLTFR-N 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~-----g----h~~~v~sv~Fspd----gqllaS~s-D 323 (464)
..-+.++|.|+..++|+++...+.|++++..... .+..+. + ....+..++|.|+ +.+.++-+ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4448999988522369999999999999843221 112111 1 1345778999997 88888865 2
Q ss_pred C----------eEEE--EeCC-C----------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 R----------TVAV--WNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ~----------TIkl--Wd~~-G----------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. ..+| |.++ + +.|.++......|. ...|+|.|||.+.++-+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~---g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL---GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC---EEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc---CCcEeECCCCcEEEEeCC
Confidence 1 1344 4442 1 23334432122233 578999999999998775
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=85.56 E-value=23 Score=37.04 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=73.8
Q ss_pred EEEcCCCcEEEEEeCCeEEEEeCC-CceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 309 FIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 309 v~FspdgqllaS~sD~TIklWd~~-Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+.-..+|.-+..+-++.||.-++. +.--++|.-- .... .+..+..||+|++||-.+ +.+|.|
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~---~i~qlvlSpsG~lLAl~g------------~~~V~V 90 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLD---DTFHVISSTSGDLLCLFN------------DNEIFV 90 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCC---TTCEEEECTTSSEEEEEC------------SSEEEE
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccC---ceeEEEECCCCCEEEEec------------CCeEEE
Confidence 333466777777778899998884 4434444322 2221 156799999999999986 688988
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC---CEEEEeeCCCcEEec
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER---NEIYTGNRHGLVHVW 462 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg---~~LaSgs~DgtVrlW 462 (464)
=.+..+.. .....+ +++.-+-.+..+.......-..|..+.|+|-| .+|+.=-.|++||+|
T Consensus 91 v~LP~~~~-------~~~~~~---------~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 91 MEVPWGYS-------NVEDVS---------IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMF 154 (452)
T ss_dssp EECCTTCS-------CCCCHH---------HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEE
T ss_pred EEecCccc-------cCcccc---------cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEE
Confidence 88764321 100000 00000000111111100011279999999965 489999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 155 Dl 156 (452)
T 3pbp_A 155 DI 156 (452)
T ss_dssp ET
T ss_pred Ec
Confidence 84
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.96 E-value=16 Score=43.84 Aligned_cols=189 Identities=15% Similarity=0.203 Sum_probs=96.7
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--Cccee
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL--LHRNK 264 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~--~~~~~ 264 (464)
+|..++||==+ ..++.|+|+.+-+.+++.. .+.|-=-++ +|. .+..|.-|+++. -++.+.|..| +...-
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 37888888665 6799999999988887654 233221111 332 556788888863 3444555421 11122
Q ss_pred eEEEEccCCCeEEE--E------eCCCeEEEEECCCCcEEEEcccCCCceEEEEEc--CCCcEEEEEe-C----CeEEEE
Q 012410 265 KVDFIEQFNEKLLV--K------QENENLQILDVRNAELMEVSRTEFMTPSAFIFL--YENQLFLTFR-N----RTVAVW 329 (464)
Q Consensus 265 ~V~F~~~~~~~lla--~------s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs--pdgqllaS~s-D----~TIklW 329 (464)
=|.+..+.+++.++ | .-.|.++|+.+..+. -+.+.||...-..+... +....+.++. - +.+.|-
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~ 231 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEE
Confidence 22332322333322 2 245899999976543 45677775332222221 2222233333 2 466666
Q ss_pred eC-CC-ceEEEeccCCC-------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 330 NF-RG-ELVTSFEDHLL-------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 330 d~-~G-e~l~tl~gH~~-------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++ +. .--..|..-.- ...|..| ++.+|+.-.+|.--.+ -|.|.+.|+.||.|+..=
T Consensus 232 Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk-----------~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEec-----------CceEEEEecccchhhhhc
Confidence 65 11 00011111000 0000111 3444444444444444 699999999999998753
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.30 E-value=0.82 Score=52.74 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=32.8
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+.+++.++|..+|++-|. |+++||||+.+|+|+++..
T Consensus 240 ~vs~~~~~~~~~lftL~~-----------D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBT-----------TCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeC-----------CCEEEEEECCCCCeEEeec
Confidence 456778899999999997 9999999999999999864
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=82.57 E-value=78 Score=36.69 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=57.0
Q ss_pred CeEEEEECCCCcEEEEcccC-CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-
Q 012410 283 ENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD- 359 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh-~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD- 359 (464)
+.|++.+...+..+...... ...+.+.+.+ +.+++++ +++.|-+..+ +|++.. .+.-... ..|.++++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n-~~~vvva-~g~~l~~fel~~~~L~~-~~~~~l~---~evscl~i~~~~ 565 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN-SSQVVVA-VGRALYYLQIHPQELRQ-ISHTEME---HEVACLDITPLG 565 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEEC-SSEEEEE-ETTEEEEEEEETTEEEE-EEEEECS---SCEEEEECCCCS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeC-CCEEEEE-ECCEEEEEEeeCCceee-ecccCCC---CceEEEEeecCC
Confidence 34556665544445443322 2345544433 4565555 5567777777 466433 2211111 12788999874
Q ss_pred -----CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 360 -----QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 360 -----g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
++++|-|+. .|++|+|.++.+-+.+.
T Consensus 566 ~~~~~s~~~aVg~~----------~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLW----------TDISARILKLPSFELLH 596 (1158)
T ss_dssp SSTTCCSEEEEEET----------TTTEEEEEETTTCCEEE
T ss_pred CCcccccEEEEEEC----------CCCEEEEEECCCCCeEE
Confidence 479999984 38999999998766554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.04 E-value=32 Score=31.84 Aligned_cols=100 Identities=7% Similarity=-0.001 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe-C-----CeEEEEeCCCceEEEeccCCCCcCCCCeeEE
Q 012410 283 ENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s-D-----~TIklWd~~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
..+.++|+.+.+-.+.- ...-....+ ...++++++.|+ + ..+.++|........+..-.. +...-..+
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~ 203 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREGAGL--VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--KRSGAGVA 203 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBSCEE--EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS--CCBSCEEE
T ss_pred ceEEEEcCCCCeEEECCCCCCCcccceE--EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc--ccccceEE
Confidence 46889999998765432 111111122 234888888877 5 368888985444444432211 11111122
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
. -++++++.|+.... ..-..|.++|+.+++-.
T Consensus 204 ~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 204 L--LNDHIYVVGGFDGT------AHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp E--ETTEEEEECCBCSS------SBCCCEEEEETTTTEEE
T ss_pred E--ECCEEEEEeCCCCC------cccceEEEEeCCCCcEE
Confidence 2 37788888775210 01357899999887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.82 E-value=6.3 Score=42.80 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=65.3
Q ss_pred eEEEEECCC----CcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-------Cce-------EEEeccCC
Q 012410 284 NLQILDVRN----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GEL-------VTSFEDHL 343 (464)
Q Consensus 284 tIkIWDv~t----g~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-------Ge~-------l~tl~gH~ 343 (464)
.+++.|.+. +.-+..+..-...|-.+.++|||+.++.++ +.||-+.|++ +++ +...+-=.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 578888876 332222222234566788999999998888 9999999964 222 23333212
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC----------eEEEEEccCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----------KCLAKINATN 401 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG----------~cl~tl~gh~ 401 (464)
. -.-.+|.++|.--.|--- |..|--||+... ..+.++.-|-
T Consensus 379 G------PlHt~Fd~~G~aYTtlfi-----------dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 G------PLHTTFDGRGNAYTTLFI-----------DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp C------EEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred c------ccEEEECCCCceEeeeee-----------cceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 2 356899999944333323 788999999764 4666776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.69 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.65 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.54 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.32 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.24 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.22 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.86 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.72 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.69 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.66 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.65 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.62 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.55 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.24 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.98 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.44 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.43 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.73 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.08 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.07 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.94 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.51 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.38 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.23 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.99 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.42 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.89 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.82 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 91.16 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.65 | |
| d2nt0a1 | 143 | Glucosylceramidase {Human (Homo sapiens) [TaxId: 9 | 90.38 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.1 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 85.61 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 83.83 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-46 Score=343.28 Aligned_cols=284 Identities=16% Similarity=0.272 Sum_probs=252.6
Q ss_pred eeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEE
Q 012410 112 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~V 191 (464)
.|. ......+.|. +|...|.+|+|+|+|+.|+|+| .| ++|+||++.+|++..++..++ ..+.++
T Consensus 2 ~w~-p~~~~~~~L~-GH~~~I~~l~~sp~~~~l~s~s----~D------g~i~iWd~~~~~~~~~~~~h~----~~V~~~ 65 (317)
T d1vyhc1 2 EWI-PRPPEKYALS-GHRSPVTRVIFHPVFSVMVSAS----ED------ATIKVWDYETGDFERTLKGHT----DSVQDI 65 (317)
T ss_dssp CCC-CCSSCSCEEE-CCSSCEEEEEECSSSSEEEEEE----SS------SCEEEEETTTCCCCEEECCCS----SCEEEE
T ss_pred ccC-CCCCccEEEc-CCCCCeEEEEEcCCCCEEEEEe----CC------CeEEEEECCCCCEEEEEeCCC----CcEEEE
Confidence 463 4556667885 5999999999999999999944 56 799999999999876665544 345589
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCc
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+|+ |+|.+++++..++++.+|+....+....+. ...+..+.|+|+ .|+.+++||+++|+++.++..+..
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 144 (317)
T d1vyhc1 66 SFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144 (317)
T ss_dssp EEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred eee-cccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC
Confidence 997 899999999999999999999888876655 567888888773 778999999999999999997778
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC--------------------cEEEEE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--------------------QLFLTF 321 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg--------------------qllaS~ 321 (464)
.+..++|++ ++..+++++.|++|++||+.+++++..+.+|...+..+.|+|++ .+++++
T Consensus 145 ~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 145 WVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223 (317)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred cceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence 889999988 46677778999999999999999999999999999999998875 468899
Q ss_pred e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 322 R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 322 s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
+ |++|++||. +|+++.++.+|..+ |.+++|+|+|++||+|+. ||+|+|||+.+++++++|++
T Consensus 224 ~~d~~i~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 224 SRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCC-----EEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCcEEEEEcC
Confidence 9 999999999 69999999999988 899999999999999987 99999999999999999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++ .|++|+|+|||+.||||+.||+|+|||
T Consensus 288 h~~----------------------------------~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HEH----------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSS----------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCC----------------------------------CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 987 899999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-44 Score=349.72 Aligned_cols=296 Identities=14% Similarity=0.212 Sum_probs=242.6
Q ss_pred ccCCeEEeeeccccc----EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce
Q 012410 105 AHSGVCAAFSRETNR----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (464)
Q Consensus 105 ~~~g~~~~~~~~~g~----~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~ 180 (464)
..++.+.+|+....+ .|... ..|.+.|.+|+|||||++||+ ++| ++|+||++.+|++...+...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~~-~~H~~~V~~l~fs~dg~~las----g~d-------~~i~iW~~~~~~~~~~~~~~ 102 (388)
T d1erja_ 35 QTNDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSNDGEYLAT----GCN-------KTTQVYRVSDGSLVARLSDD 102 (388)
T ss_dssp ECSSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTTSSEEEE----ECB-------SCEEEEETTTCCEEEEECC-
T ss_pred CCCCcEEEeCCCCCcceeeeeEee-CCCCCcEEEEEECCCCCEEEE----EeC-------CeEEEEEecccceEeeeccc
Confidence 455667778643332 22222 248999999999999999988 554 48999999999875433222
Q ss_pred ee--------------ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 181 ES--------------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 181 ~~--------------~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
.. .+...+.+|+|+ |||++|++|+.|++|++||..+++++..+. ...|..++++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 181 (388)
T d1erja_ 103 SAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181 (388)
T ss_dssp ----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccCCCCCEEEEEEC-CCCCcceeccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 122334589997 899999999999999999999999998876 578999999873
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-------ccCCCceEEE
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAF 309 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-------~gh~~~v~sv 309 (464)
.++.|++||.+++.++....++ .....+.|.+.++..+++++.|++|++||+++++.+..+ .+|...|.++
T Consensus 182 ~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 260 (388)
T d1erja_ 182 SGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260 (388)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred ccceeeeeeeccccccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence 6789999999999998887754 455677787766677777899999999999999987654 4688899999
Q ss_pred EEcCCCcEEEEEe-CCeEEEEeC-CC------------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 310 IFLYENQLFLTFR-NRTVAVWNF-RG------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 310 ~FspdgqllaS~s-D~TIklWd~-~G------------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
+|+|+|++|++++ |++|++||+ ++ .+..++..|... |.+++|+|||++|++|+.
T Consensus 261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~sg~~------- 328 (388)
T d1erja_ 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK------- 328 (388)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-------
T ss_pred EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce-----EEEEEECCCCCEEEEEeC-------
Confidence 9999999999999 999999997 33 345677788877 899999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE------EcCCCCE
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF------YDEERNE 449 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla------fspDg~~ 449 (464)
||+|+|||+.+|+++.+|++|.+ .|++++ |+|||+.
T Consensus 329 ----dg~i~vwd~~~~~~~~~l~~H~~----------------------------------~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 329 ----DRGVLFWDKKSGNPLLMLQGHRN----------------------------------SVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS----------------------------------CEEEEEECSSCTTCTTCEE
T ss_pred ----CCEEEEEECCCCcEEEEEeCCCC----------------------------------CEEEEEEecCcccCCCCCE
Confidence 99999999999999999999997 788876 5789999
Q ss_pred EEEeeCCCcEEeccC
Q 012410 450 IYTGNRHGLVHVWSN 464 (464)
Q Consensus 450 LaSgs~DgtVrlWd~ 464 (464)
|||||.||+|+||+.
T Consensus 371 l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 371 FATGSGDCKARIWKY 385 (388)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEeCCCEEEEEee
Confidence 999999999999983
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-44 Score=346.15 Aligned_cols=281 Identities=12% Similarity=0.110 Sum_probs=238.3
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEe
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFD 194 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs 194 (464)
.+.+.++++ .|.+.|.+|+|+|+|+.|++ ++|+ +|+|||+..+........+.. ++.+.+.+|+|+
T Consensus 40 ~~~~~~~~~--~H~~~V~~v~fs~~g~~lat----g~dg-------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 40 RHARQINTL--NHGEVVCAVTISNPTRHVYT----GGKG-------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp SEEEEEEEE--CCSSCCCEEEECSSSSEEEE----ECBS-------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC
T ss_pred CCceEEEEC--CCCCcEEEEEECCCCCEEEE----EECC-------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEc
Confidence 345666676 58899999999999999999 5554 899999988776443333321 233445689997
Q ss_pred CCCCcEEEEecCCCcEEEEeCCC--CeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~t--g~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
|||++|++|+.|++|+|||+.. +++...+. ...|..++|+|+ .|..|++|+++++++......+...
T Consensus 107 -~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1gxra_ 107 -PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp -TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -CCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999874 45556655 467899999874 6789999999999999998877788
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEec
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 340 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~ 340 (464)
+.+++|++ ++..+++++.|++|++||++++++++.+. |...|.+++|+|++++|++++ |+.|++||++ +++. ...
T Consensus 186 v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~ 262 (337)
T d1gxra_ 186 ASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH 262 (337)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC
T ss_pred cccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-ccc
Confidence 99999988 46778889999999999999999998775 668899999999999999999 9999999995 6654 667
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|... |.+++|+|||++||+++. |++|+|||+.+|+++.++. |..
T Consensus 263 ~~~~~-----i~~v~~s~~g~~l~s~s~-----------Dg~i~iwd~~~~~~~~~~~-~~~------------------ 307 (337)
T d1gxra_ 263 LHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSK-ESS------------------ 307 (337)
T ss_dssp CCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CSS------------------
T ss_pred ccccc-----cceEEECCCCCEEEEEeC-----------CCeEEEEECCCCCEEEEcc-CCC------------------
Confidence 88877 899999999999999987 9999999999999999875 544
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+.||||+.||+|+|||.
T Consensus 308 ----------------~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 308 ----------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ----------------CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8999999999999999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.5e-43 Score=328.83 Aligned_cols=282 Identities=12% Similarity=0.166 Sum_probs=233.9
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
+-+..++| .+|.+.|++|+|+|+|+.||| ++.| ++|+|||+.+|+....+..+. ..+.+|+|+ |
T Consensus 44 ~~~~~~tL-~GH~~~I~~l~~s~~~~~l~s----gs~D------g~v~iWd~~~~~~~~~~~~~~----~~v~~v~~~-~ 107 (340)
T d1tbga_ 44 QMRTRRTL-RGHLAKIYAMHWGTDSRLLVS----ASQD------GKLIIWDSYTTNKVHAIPLRS----SWVMTCAYA-P 107 (340)
T ss_dssp CCCEEEEE-CCCSSCEEEEEECTTSSEEEE----EETT------TEEEEEETTTTEEEEEEECSC----SCEEEEEEC-T
T ss_pred ceeeeEEE-CCCCCCEEEEEECCCCCEEEE----EECC------CceeeeecccceeEEEEeccc----ccEEeeEee-c
Confidence 34456678 559999999999999999999 4456 799999999998865554443 345589997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCe----EEEEecC--CCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYT----MLYSISD--KHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~----~l~tl~~--~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+|++|++|+.|+++++|+..... ....+.. .........+ ..|.+.+.|...+.............+
T Consensus 108 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (340)
T d1tbga_ 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred cceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeE
Confidence 99999999999999999977543 3344442 2233333222 367788999998887777776555666
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
....+.+ .+..+++++.|++|++||+++++++.++.+|...|.+++|+|+|++|++++ |++|++||+ .++.+.++..
T Consensus 188 ~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~ 266 (340)
T d1tbga_ 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc
Confidence 7777766 456677788999999999999999999999999999999999999999999 999999999 5888887764
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
+.... .|.+++|+|||++|++|+. ||+|+|||+.+|+++.++++|..
T Consensus 267 ~~~~~---~i~~~~~s~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~H~~------------------- 313 (340)
T d1tbga_ 267 DNIIC---GITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN------------------- 313 (340)
T ss_dssp TTCCS---CEEEEEECSSSCEEEEEET-----------TSCEEEEETTTCCEEEEECCCSS-------------------
T ss_pred ccccC---ceEEEEECCCCCEEEEEEC-----------CCEEEEEECCCCcEEEEEcCCCC-------------------
Confidence 44332 2899999999999999987 99999999999999999999987
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.|||||.||+|+|||
T Consensus 314 ---------------~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 314 ---------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 899999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.8e-43 Score=338.63 Aligned_cols=268 Identities=12% Similarity=0.073 Sum_probs=226.7
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
....++++|+|+.||.+ .+ +.+.+|++.+++....+..| ...+.+++|+ |||++||+|+.|++|
T Consensus 19 ~~~~~a~~~~g~~l~~~----~~-------~~v~i~~~~~~~~~~~~~~H----~~~v~~~~~s-p~g~~latg~~dg~i 82 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYC----NG-------TSVYTVPVGSLTDTEIYTEH----SHQTTVAKTS-PSGYYCASGDVHGNV 82 (311)
T ss_dssp CCCCCEECTTSSEEEEE----ET-------TEEEEEETTCSSCCEEECCC----SSCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred CeEEEEEcCCCCEEEEE----eC-------CEEEEEECCCCceeEEEcCC----CCCEEEEEEe-CCCCeEeccccCceE
Confidence 45578999999999873 33 47999999988876443333 3445599997 899999999999999
Q ss_pred EEEeCCCCeEE--EEec--CCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe-
Q 012410 211 KVFDLKNYTML--YSIS--DKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK- 275 (464)
Q Consensus 211 KlWdl~tg~~l--~tl~--~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~- 275 (464)
+|||+.+++++ .++. ...|.+|+|+|+ .+..++||+++++++++++.+|...+.+|+|+|+ ++.
T Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~-~~~~ 161 (311)
T d1nr0a1 83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS-RPFR 161 (311)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS-SSCE
T ss_pred eeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceee
Confidence 99999988754 3454 578999999884 3567999999999999999987788999999985 444
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec-------cCCCCc
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE-------DHLLWH 346 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~-------gH~~~~ 346 (464)
+++++.|++|+|||+++++++..+.+|...|.+++|+|++++|++++ |++|+|||. +++.+.+|+ +|..+
T Consensus 162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~- 240 (311)
T d1nr0a1 162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS- 240 (311)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC-
T ss_pred ecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc-
Confidence 56688999999999999999999999999999999999999999999 999999999 699988876 56666
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
|.+++|+|||++||+||. ||+|+|||+.+|+|+++|+.|...
T Consensus 241 ----V~~~~~s~~~~~l~tgs~-----------Dg~v~iwd~~t~~~~~~l~~~~~~----------------------- 282 (311)
T d1nr0a1 241 ----VFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGTRI----------------------- 282 (311)
T ss_dssp ----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCSSG-----------------------
T ss_pred ----ccccccCCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEECCCCc-----------------------
Confidence 899999999999999987 999999999999999999988640
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...+.++ .|+++.|++++.||.|++||.
T Consensus 283 --------~~~~~~~--~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 283 --------EDQQLGI--IWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp --------GGCEEEE--EECSSCEEEEETTCCEEEEET
T ss_pred --------cceEEEE--EecCCEEEEEECCCEEEEEeC
Confidence 0134444 455677999999999999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-41 Score=316.59 Aligned_cols=307 Identities=14% Similarity=0.148 Sum_probs=237.1
Q ss_pred hccc-cceE-EEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceee
Q 012410 85 LMKR-TKVI-EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 85 l~~~-s~v~-~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~t 162 (464)
|+.+ ..|. -+.+.|++|++++.||++++||+.++++++.+. +|...|++|+|+|++ .|++ ++.| ++
T Consensus 8 L~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~~-~l~s----~s~D------~~ 75 (355)
T d1nexb2 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVS----GSTD------RT 75 (355)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETTT-EEEE----EETT------CC
T ss_pred ECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCCC-EEEE----Eecc------cc
Confidence 4555 3343 344569999999999999999999999999995 489999999999965 7777 4456 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----------------
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------------- 226 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---------------- 226 (464)
+++|++..+++......... ......+.++ ++++.|++++.|++|++||+.++.++.....
T Consensus 76 i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNS--TVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 152 (355)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTT
T ss_pred cccccccccccccccccccc--cccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccc
Confidence 99999988776422111111 0111146675 8999999999999999999998776543210
Q ss_pred ---------CCEeEEEEe------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 227 ---------KHVQEIKIR------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 227 ---------~~V~~Vafs------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
..|...... ...|..|++||+.+++.+.++..+...+..+.|++. +..+++++.|++|+|||++
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~ 231 (355)
T d1nexb2 153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLE 231 (355)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETT
T ss_pred eeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccccc-ceeeecccccceEEeeecc
Confidence 112222222 137789999999999999999876678899999984 6778889999999999999
Q ss_pred CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 012410 292 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 369 (464)
Q Consensus 292 tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~ 369 (464)
+++++..+.+|...|.+++|+| ++|++++ |++|++||+ +++. .+..|...+ +...+|+|++++|++|+
T Consensus 232 ~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~----~~~~~~~~~~~~l~~g~-- 301 (355)
T d1nexb2 232 NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR--KFSYHHTNL----SAITTFYVSDNILVSGS-- 301 (355)
T ss_dssp TCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE--EEEEECTTC----CCCCEEEECSSEEEEEE--
T ss_pred cccccccccccccccccccccc--ceeeeeecccccccccccccce--ecccccCCc----eEEEEEcCCCCEEEEEe--
Confidence 9999999999999999998864 6899999 999999999 4654 455666553 22356899999999886
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEE-EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 370 EPEDQWMEGSAGSINVSSILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 370 ~~~~~~~~s~DgtIklWdi~tG~cl~-tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
|++|+|||+.+|++++ .+.+|.. .|++|+|+|+ .
T Consensus 302 ----------d~~i~vwd~~tg~~~~~~~~~~~~----------------------------------~V~~v~~~~~-~ 336 (355)
T d1nexb2 302 ----------ENQFNIYNLRSGKLVHANILKDAD----------------------------------QIWSVNFKGK-T 336 (355)
T ss_dssp ----------TTEEEEEETTTCCBCCSCTTTTCS----------------------------------EEEEEEEETT-E
T ss_pred ----------CCEEEEEECCCCCEEEEEecCCCC----------------------------------CEEEEEEcCC-e
Confidence 8999999999999996 5678876 8999999998 4
Q ss_pred EEEEeeCCCcEEec
Q 012410 449 EIYTGNRHGLVHVW 462 (464)
Q Consensus 449 ~LaSgs~DgtVrlW 462 (464)
.|++|+.||+++||
T Consensus 337 ~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 337 LVAAVEKDGQSFLE 350 (355)
T ss_dssp EEEEEESSSCEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 78999999997776
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-39 Score=300.58 Aligned_cols=311 Identities=13% Similarity=0.176 Sum_probs=237.3
Q ss_pred hcccc-ceEE-EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceee
Q 012410 85 LMKRT-KVIE-IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 85 l~~~s-~v~~-~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~t 162 (464)
|+.+. .|.. +-+.|++|++++.||++++||+.+|++++++. +|...|+++.|+| +.|+++ +.| ++
T Consensus 12 l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~--~~l~s~----s~D------~~ 78 (342)
T d2ovrb2 12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRD--NIIISG----STD------RT 78 (342)
T ss_dssp EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEET--TEEEEE----ETT------SC
T ss_pred ECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCC--Cccccc----eec------cc
Confidence 44543 3433 34459999999999999999999999999994 5889999999998 478884 455 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCC--EeEEEEe-----
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH--VQEIKIR----- 235 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~--V~~Vafs----- 235 (464)
+++|++....... ... .+...+.+....+..++.+..|.++.+||..+++....+.... .......
T Consensus 79 ~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d2ovrb2 79 LKVWNAETGECIH-----TLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 151 (342)
T ss_dssp EEEEETTTTEEEE-----EEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred cccccccccccee-----ccc--ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence 9999976655421 111 1111222112345678889999999999999999888776322 2111111
Q ss_pred -CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 236 -SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 236 -~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
.+.|++|++||...++++.++..+...+..+.+ ++..+++++.|++|+|||++++++++.+.+|...+.+++|+
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-- 226 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-- 226 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--
T ss_pred eecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--
Confidence 247899999999999999999865444444443 45788889999999999999999999999999988887665
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+++|++++ |++|++||+ .++....+.+|.... ....+++++++++++|+. ||+|+|||+.+|+
T Consensus 227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~s~-----------Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ----SAVTCLQFNKNFVITSSD-----------DGTVKLWDLKTGE 291 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS----SCEEEEEECSSEEEEEET-----------TSEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEecccccccccccccceee----eceeecccCCCeeEEEcC-----------CCEEEEEECCCCC
Confidence 46999999 999999999 688889998766532 223445556789999987 9999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc----EEeccC
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 464 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt----VrlWd~ 464 (464)
+++++...... . .-..|++|+|+|||..||+|+.||+ |++||.
T Consensus 292 ~i~~~~~~~~~----------~-------------------~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 292 FIRNLVTLESG----------G-------------------SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEEEEEECTTG----------G-------------------GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred EEEEEecccCC----------C-------------------CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 99998642210 0 0017999999999999999999997 999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.1e-40 Score=300.16 Aligned_cols=271 Identities=10% Similarity=0.156 Sum_probs=233.3
Q ss_pred hccc-cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 85 LMKR-TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 85 l~~~-s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
|+.+ .+|..+.+. |++|++++.||++++||..+++.+..+. +|...|+++.|+|++..+++.+ .+ .
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~----~~------~ 81 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCS----AD------M 81 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEE----TT------S
T ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccc----cc------c
Confidence 3443 457777776 8999999999999999999999999995 5888999999999999998833 44 5
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-- 237 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-- 237 (464)
++.+|+....+....+..+. .....+.|+ |++..|++++.|+++++||+.+++++.++. ...+..++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 82 TIKLWDFQGFECIRTMHGHD----HNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156 (317)
T ss_dssp CCCEEETTSSCEEECCCCCS----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccc----ccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence 67778876666543222222 334478997 899999999999999999999999998886 467899999873
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-------------------CCeEEEEeCCCeEEEEECCC
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------------NEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-------------------~~~lla~s~D~tIkIWDv~t 292 (464)
.|++|++|++.+++++..+..+...+..++|.|.. +..+++++.|++|++||+.+
T Consensus 157 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 236 (317)
T d1vyhc1 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236 (317)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence 68899999999999999999776788889887642 12466788999999999999
Q ss_pred CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 293 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 293 g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
++++.++.+|...|.+++|+|+|++|++++ |++|+|||+ +|+++.+|.+|... |++++|+|||++||||+.
T Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----V~~~~~s~~~~~l~s~s~-- 309 (317)
T d1vyhc1 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV-- 309 (317)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET--
T ss_pred CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC--
Confidence 999999999999999999999999999999 999999999 69999999999987 899999999999999987
Q ss_pred CccccccCCCCeEEEEe
Q 012410 371 PEDQWMEGSAGSINVSS 387 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWd 387 (464)
||+|+|||
T Consensus 310 ---------Dg~i~iWd 317 (317)
T d1vyhc1 310 ---------DQTVKVWE 317 (317)
T ss_dssp ---------TSEEEEEC
T ss_pred ---------CCeEEEeC
Confidence 99999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.4e-39 Score=301.65 Aligned_cols=276 Identities=12% Similarity=0.098 Sum_probs=216.5
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
|+..+.+ .+|...|.+|+|+|||++|++ ++.| ++++|||+.+|++...+. ..+...+.+|+|+ ||
T Consensus 2 g~~~~~~-~GH~~~V~~l~~s~dg~~l~s----~s~D------g~v~vWd~~~~~~~~~~~---~~h~~~v~~v~~~-~~ 66 (299)
T d1nr0a2 2 GSIDQVR-YGHNKAITALSSSADGKTLFS----ADAE------GHINSWDISTGISNRVFP---DVHATMITGIKTT-SK 66 (299)
T ss_dssp TEEEEEE-CCCSSCEEEEEECTTSSEEEE----EETT------SCEEEEETTTCCEEECSS---CSCSSCEEEEEEC-TT
T ss_pred CccceEc-CCCCCCcEEEEECCCCCEEEE----EcCC------CeEEEEECCCCcEEEEEc---CCCCCcEEEEEee-cc
Confidence 5566677 559999999999999999999 4456 799999999999865442 1222445589997 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeE-----EEEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTM-----LYSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~-----l~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
|++++ ++.|+++++|++..... ...-....+..++|+|+ .+..+++|+. ++....... +....
T Consensus 67 g~~~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~--~~~~~~~~~--~~~~~ 141 (299)
T d1nr0a2 67 GDLFT-VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH--GKLTEVPIS--YNSSC 141 (299)
T ss_dssp SCEEE-EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET--TEEEEEECS--SCEEE
T ss_pred ceeec-ccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccc--ccccccccc--ccccc
Confidence 98665 66799999999865332 22223567899999885 4468999985 444444332 56788
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE---EEe
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV---TSF 339 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l---~tl 339 (464)
++|+| ++..+++++.|++|++||++++++.+ ....|...|.+++|+|++++|++++ |++|++||+ +++.+ ..+
T Consensus 142 ~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 220 (299)
T d1nr0a2 142 VALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 220 (299)
T ss_dssp EEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99988 45677778999999999999998776 3557889999999999999999999 999999999 56654 467
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE--ccCCCCCCcccccCCCCCCc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI--NATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl--~gh~~~~~~~~~~~~~~~~~ 417 (464)
.+|..+ |++++|+|||++||+|+. ||+|+|||+.++++...+ .+|..
T Consensus 221 ~~h~~~-----v~~l~~s~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~--------------- 269 (299)
T d1nr0a2 221 TFHTAK-----VACVSWSPDNVRLATGSL-----------DNSVIVWNMNKPSDHPIIIKGAHAM--------------- 269 (299)
T ss_dssp CCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTCTTSCCEEETTSSTT---------------
T ss_pred cccccc-----cccccccccccceEEEcC-----------CCEEEEEECCCCCcceEEEecCCCC---------------
Confidence 788887 899999999999999987 999999999988654433 33332
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..|.+++ +|+++.|+||+.|++|||||.
T Consensus 270 ------------------~~v~~~~-~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 270 ------------------SSVNSVI-WLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp ------------------SCEEEEE-EEETTEEEEEETTSCEEEEEC
T ss_pred ------------------CcEEEEE-ECCCCEEEEEeCCCEEEEEec
Confidence 1566665 467789999999999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-38 Score=312.79 Aligned_cols=305 Identities=12% Similarity=0.049 Sum_probs=221.4
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
.-+.|.+++|||||+.||+ ++.+ ++|+||++..+++..... +. +|.+.+.+|+|+ |||++|++|+.|
T Consensus 6 ~~~pIt~~~~s~dg~~la~----~~~~------~~i~iw~~~~~~~~~~~~-l~-gH~~~V~~l~fs-p~~~~l~s~s~D 72 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAI----CPNN------HEVHIYEKSGNKWVQVHE-LK-EHNGQVTGVDWA-PDSNRIVTCGTD 72 (371)
T ss_dssp CSSCCCEEEECTTSSEEEE----ECSS------SEEEEEEEETTEEEEEEE-EE-CCSSCEEEEEEE-TTTTEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEE----EeCC------CEEEEEECCCCCEEEEEE-ec-CCCCCEEEEEEC-CCCCEEEEEECC
Confidence 4466999999999999988 4566 799999998887432111 11 233455689998 899999999999
Q ss_pred CcEEEEeCCCCeEEEEe--c--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe----eCCcceeeEEEEcc
Q 012410 208 SIYKVFDLKNYTMLYSI--S--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY----HLLHRNKKVDFIEQ 271 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl--~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~----~~~~~~~~V~F~~~ 271 (464)
++|+|||+.+++....+ . ...|.+++|+|+ .|++|++|+++.+.....+. .+...+.+|+|+|
T Consensus 73 ~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p- 151 (371)
T d1k8kc_ 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP- 151 (371)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-
T ss_pred CeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-
Confidence 99999999988765443 3 467999999884 67899999998876554433 3446789999998
Q ss_pred CCCeEEEEeCCCeEEEEECCC------------------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 272 FNEKLLVKQENENLQILDVRN------------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~t------------------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
++..|++++.|++|++||+.. ++++....+|...|.+++|+|||++||+++ |++|++||+
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~ 231 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence 466777789999999999865 357778889999999999999999999999 999999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
+++++.++.+|..+ |.+++|+|||++||+|+ |+.+++|+..++....++.++...+.......
T Consensus 232 ~~~~~~~~~~~~~~-----v~s~~fs~d~~~la~g~------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
T d1k8kc_ 232 KKMAVATLASETLP-----LLAVTFITESSLVAAGH------------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294 (371)
T ss_dssp GTTEEEEEECSSCC-----EEEEEEEETTEEEEEET------------TSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred cccceeeeeccccc-----ceeeeecCCCCEEEEEc------------CCceEEEEeeCCCceEEEeeeecCcccccccc
Confidence 69999999999988 89999999999999875 77777766554444444555443222111000
Q ss_pred CCCC------Cccccccccccc-cccccccccCEEEEEEcCCCC----EEEEeeCCCcEEecc
Q 012410 412 SSST------GKSKKLNKSSYI-RSTVGEALEDITSLFYDEERN----EIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ~~~~------~~~~~~~~~~~~-~~~~~~~l~~V~slafspDg~----~LaSgs~DgtVrlWd 463 (464)
.... .......+.... ......+-..|+++++.|++. .|+||+.||+|+|||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 0000 000000000000 000001233799999988763 599999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-38 Score=302.19 Aligned_cols=267 Identities=15% Similarity=0.154 Sum_probs=219.4
Q ss_pred ccceEEEEec--cceeehhccCCeEEeeecccccEe---eEe-ecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFL-NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 88 ~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l---~~l-n~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
...|..+.+. |.+|++++ +|.+++||+.++... ..+ ...|...|.+++|+|||+.|+++ +.| +
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~----~~d------g 119 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEA------S 119 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESS------S
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe----ecc------c
Confidence 4566666666 88999987 899999998765432 222 24688899999999999999984 455 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-- 237 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-- 237 (464)
+++||++.......... +. .+...+..++|+ |++.+|++++.|++|++||+.++++..... ...|.+++|+++
T Consensus 120 ~i~iwd~~~~~~~~~~~-~~-~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAE-LT-SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEEEECCCC--EEEEE-EE-CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred ccccccccccccccccc-cc-cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999987554321111 11 122333478997 899999999999999999999999988766 567999999874
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
.|+.|++||+++|++++++.+. ..+.+++|+| ++..+++++.|+.|++||+.++++.. ...|...|.+++|
T Consensus 197 ~~~~~~~d~~v~i~d~~~~~~~~~~~~~-~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 197 KLWTGGLDNTVRSWDLREGRQLQQHDFT-SQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKF 273 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEE
T ss_pred ccccccccccccccccccceeecccccc-cceEEEEEcc-cccccceecccccccccccccccccc-ccccccccceEEE
Confidence 6789999999999999998754 7789999988 46677778999999999999999875 4678889999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+|||++|+|++ |++|+|||. +|+++.++. |... |.+++|+|||++||+||. ||+|+||||
T Consensus 274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~-----v~~~~~s~d~~~l~t~s~-----------D~~I~vWdl 335 (337)
T d1gxra_ 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS-----VLSCDISVDDKYIVTGSG-----------DKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-----EEEEEECTTSCEEEEEET-----------TSCEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCC-----EEEEEEeCCCCEEEEEeC-----------CCeEEEEEE
Confidence 99999999999 999999999 699998876 5555 899999999999999987 999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-38 Score=307.39 Aligned_cols=279 Identities=11% Similarity=0.069 Sum_probs=210.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeC-CCCcEEEEecCCCcE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIY 210 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~-pdGk~LaSgs~D~ti 210 (464)
+-++.|+|+|+.|+.++ + +. ..++.|+....+.... .-+.......+.+|+|+| .||++||+|+.|++|
T Consensus 20 ~t~l~~~~~~~~la~~~--~-~~------~~i~~~~~~~~~~~~~-~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i 89 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPC--G-KS------AFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 89 (325)
T ss_dssp CCCCEEETTTTEEEEEE--T-TE------EEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred eEEEEECCCCCEEEEEe--C-CC------EEEEEEeCCCCCccce-EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence 45789999999998844 2 22 2444555433332211 111110112345899983 278999999999999
Q ss_pred EEEeCCCCeEEEE----------ecCCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 211 KVFDLKNYTMLYS----------ISDKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 211 KlWdl~tg~~l~t----------l~~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
||||+.+++++.. .+...|.+|+|+|+ .+..+++|+.++|+++.++.+|...+.+++|+|
T Consensus 90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169 (325)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS
T ss_pred EEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc
Confidence 9999976554321 12467999999874 467899999999999999997778999999998
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEE---cccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~---l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
..+..+++++.|++|++||+.+++.... +.+|...|.+++|+|| +.+|++++ |++|+|||+ +|+++.+|++|..
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~ 249 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 249 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc
Confidence 6444566789999999999999887664 4567788999999997 68999999 999999999 6999999999998
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+.. .++++++ |||++|++++. |++|+|||+.+|+|++++..|.....
T Consensus 250 ~v~~-~~~s~~~-~dg~~l~s~s~-----------D~~i~iwd~~~~~~~~~~~~~~~~~~------------------- 297 (325)
T d1pgua1 250 PVQG-GIFALSW-LDSQKFATVGA-----------DATIRVWDVTTSKCVQKWTLDKQQLG------------------- 297 (325)
T ss_dssp CCCS-CEEEEEE-SSSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCTTCGG-------------------
T ss_pred cccc-ceeeeec-cCCCEEEEEeC-----------CCeEEEEECCCCCEEEEEEecCCccc-------------------
Confidence 8542 2344443 78999999987 99999999999999999988874100
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
....++.+++++ .|+|||.||+|++||+
T Consensus 298 -----------~~~~~~~~~~~~-~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 -----------NQQVGVVATGNG-RIISLSLDGTLNFYEL 325 (325)
T ss_dssp -----------GCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred -----------CeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence 023344444444 7899999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-37 Score=296.63 Aligned_cols=267 Identities=13% Similarity=0.121 Sum_probs=220.1
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeec-----------------CCCceEEEEEEeeCCCEEEEEEe
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV-----------------SPDEVIRSLFYNKNNDSLITVSV 149 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~-----------------~~~~~i~Sv~fs~~g~~l~svSa 149 (464)
..|..+-++ |++||+++ +|.+++|++.+|+.+..+.. .|...|++|+|+|+|+.|+++
T Consensus 63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~-- 139 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-- 139 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE--
T ss_pred CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec--
Confidence 567777776 88999986 89999999999999887743 356679999999999999994
Q ss_pred ecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCC
Q 012410 150 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKH 228 (464)
Q Consensus 150 ~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~ 228 (464)
+.| +++++|++.+++.......+. ..+..++|+ +++..+++|+.|+.+++||+++..++.... ...
T Consensus 140 --~~d------g~v~i~~~~~~~~~~~~~~h~----~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 206 (388)
T d1erja_ 140 --AED------RLIRIWDIENRKIVMILQGHE----QDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206 (388)
T ss_dssp --ETT------SCEEEEETTTTEEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred --ccc------ccccccccccccccccccccc----ccccccccc-cccccccccccceeeeeeeccccccccccccccc
Confidence 455 799999999888754333333 334489997 899999999999999999999999887655 445
Q ss_pred EeEEEEeC---------CCceeEEEEEcCCCcEEEEEe-------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC
Q 012410 229 VQEIKIRS---------SSHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 229 V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~-------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t 292 (464)
...+++.+ +.|+.|++||+++|+.+.++. +|...+.+++|+| ++..|++++.|++|++||+++
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~ 285 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 285 (388)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccC
Confidence 66666654 367899999999999998875 2346789999998 467777889999999999987
Q ss_pred Cc------------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEE---
Q 012410 293 AE------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIY--- 355 (464)
Q Consensus 293 g~------------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~sva--- 355 (464)
++ +......|...|.+++|+|+|++|++++ |++|+|||+ +|+++.+|++|... |.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~-----V~~~~~~~ 360 (388)
T d1erja_ 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VISVAVAN 360 (388)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECS
T ss_pred CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC-----EEEEEEec
Confidence 65 3455667889999999999999999999 999999999 69999999999988 67776
Q ss_pred ---ECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 356 ---ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 356 ---fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|+|||++|||||. ||+|+|||+
T Consensus 361 ~~~~spd~~~l~s~s~-----------Dg~I~iW~~ 385 (388)
T d1erja_ 361 GSSLGPEYNVFATGSG-----------DCKARIWKY 385 (388)
T ss_dssp SCTTCTTCEEEEEEET-----------TSEEEEEEE
T ss_pred CcccCCCCCEEEEEeC-----------CCEEEEEee
Confidence 5789999999987 999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-37 Score=306.60 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=214.5
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc-----ccCce---EEEEeC
Q 012410 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES-----LKWPG---FVEFDD 195 (464)
Q Consensus 124 ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~-----~~~~~---~VaFs~ 195 (464)
+..+|..-|++|++++ +.|+|+| .| ++++||+..+++............ ..|+. .+.++.
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S----~D------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCS----GD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA 76 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEE----TT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred cCCcccCccEEEEEeC--CEEEEEE----CC------CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCC
Confidence 3467999999999876 6898855 45 799999988877533211111000 01121 344433
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEE---E--Eec-------CCCEeEEEEeC-------------CCceeEEEEEcCCC
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTML---Y--SIS-------DKHVQEIKIRS-------------SSHVPLKILSIEDG 250 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l---~--tl~-------~~~V~~Vafs~-------------s~d~tIklWdi~tG 250 (464)
.++.++++++.|++|++|++...... . .+. ...++.+++.+ +.|++|++|++...
T Consensus 77 ~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred CCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence 45678999999999999997654321 1 111 24577887754 36789999998422
Q ss_pred c---------------EEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE------cccCCCce
Q 012410 251 T---------------VLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV------SRTEFMTP 306 (464)
Q Consensus 251 ~---------------~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~------l~gh~~~v 306 (464)
. ...... .+...+.+|+|+|+ +.+++++.|++|+|||+++++++.. +.+|...|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V 234 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234 (393)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred CcccceeeeeeccceecccceecccCCCCcEEEEEECCC--CEEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence 1 111111 12234578999985 6888899999999999999998763 56799999
Q ss_pred EEEEEcCCCcEEEEEe-CCe---EEEEeC-CCceEEEec-------------cCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 307 SAFIFLYENQLFLTFR-NRT---VAVWNF-RGELVTSFE-------------DHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~T---IklWd~-~Ge~l~tl~-------------gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.+++|+|||++|++++ |++ |+|||+ +|+++.+|. ||..+ |++|+|+|||++|||||.
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-----V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEEET
T ss_pred EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-----eeeeccCCCCCeeEEECC
Confidence 9999999999999999 875 999999 699999886 89998 899999999999999997
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc----ccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV----DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 444 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs 444 (464)
|++|||||+.+|+|+++|+||.+.+.. ..+++++..++ ...++.+.|.
T Consensus 310 -----------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 361 (393)
T d1sq9a_ 310 -----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-----------------EPGVFDVKFL 361 (393)
T ss_dssp -----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS-----------------SCCEEEEEEE
T ss_pred -----------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE-----------------EcccceEEEC
Confidence 999999999999999999999874432 23333333211 1257778877
Q ss_pred CCC----------CEEEEeeCCCcEEecc
Q 012410 445 EER----------NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 445 pDg----------~~LaSgs~DgtVrlWd 463 (464)
|++ +.|++++.|+.||+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 362 KKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 765 4599999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-36 Score=294.80 Aligned_cols=263 Identities=8% Similarity=0.004 Sum_probs=217.9
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..|+.|+.. ..+.+.+|++.+++....+. +|.+.|.+++|+|+|++|++ ++.| ++++||++..++...
T Consensus 27 ~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~lat----g~~d------g~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 27 PAGDKIQYC-NGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCAS----GDVH------GNVRIWDTTQTTHIL 94 (311)
T ss_dssp TTSSEEEEE-ETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEE----EETT------SEEEEEESSSTTCCE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEec----cccC------ceEeeeeeecccccc
Confidence 348887776 45568899999999999885 58899999999999999999 4455 799999998887642
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeE
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPL 242 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tI 242 (464)
...+ . .+.+.+.+|+|+ |||+.|++++. |.+++|||+++++++.++. .+.|.+|+|+|+ .|++|
T Consensus 95 ~~~~-~-~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i 171 (311)
T d1nr0a1 95 KTTI-P-VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171 (311)
T ss_dssp EEEE-E-CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred cccc-c-cccCcccccccc-ccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 2111 1 122445589997 89999999876 5679999999999988776 467999999873 67899
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-------cCCCceEEEEEcCCC
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLYEN 315 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-------gh~~~v~sv~Fspdg 315 (464)
++||+++++++.++..+...+.+|+|+| ++..+++++.|++|++||+.+++.+.++. +|...|.+++|+|+|
T Consensus 172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccccccCc-cccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 9999999999999997778899999999 46677778999999999999999887653 688899999999999
Q ss_pred cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 316 QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 316 qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
++|+|++ |++|+|||+ +|+++++|..|..-. ...+.+.++++.|++++. ||.|++||.+
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~----~~~~~~~~~~~~l~s~s~-----------dG~i~~wd~d 311 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGIIWTKQALVSISA-----------NGFINFVNPE 311 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGG----GCEEEEEECSSCEEEEET-----------TCCEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc----ceEEEEEecCCEEEEEEC-----------CCEEEEEeCC
Confidence 9999999 999999999 799999999886531 233456667778999986 9999999963
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-35 Score=276.92 Aligned_cols=271 Identities=10% Similarity=0.129 Sum_probs=223.1
Q ss_pred hccc-cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 85 LMKR-TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 85 l~~~-s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
|+.+ .+|..+.+. +++|++++.||.+++||..+++.+..+.. |...|.+++|+|+|..++++ +.| .
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~----~~d------~ 119 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACG----GLD------N 119 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEE----ETT------C
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeee----ccc------c
Confidence 3433 456776665 89999999999999999999999999955 88889999999999999984 455 6
Q ss_pred eEEEEEeccCCCCCcccceeeccccCce--EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC-
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS- 236 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~--~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~- 236 (464)
++++|+.......... ... ..+|.. ...+. ..+..++.+..|.+.+.|+..+........ ...|..+.+.+
T Consensus 120 ~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (340)
T d1tbga_ 120 ICSIYNLKTREGNVRV-SRE--LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp CEEEEESSSSCSCCCE-EEE--ECCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred eeeccccccccccccc-cee--ccccccccccccc-ccccccccccccccccccccccccccccccccceeEeeeccccc
Confidence 8999998666543211 111 112222 33333 456688889999999999998877765443 45677777755
Q ss_pred -------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc--ccCCCceE
Q 012410 237 -------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPS 307 (464)
Q Consensus 237 -------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l--~gh~~~v~ 307 (464)
..|++|++||+++++++.++..|...+.+|+|+| ++..+++++.|++|++||+.+.+.+..+ ..|...+.
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~ 274 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence 3788999999999999999998778899999998 4667778899999999999999988765 45567799
Q ss_pred EEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 308 AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 308 sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+++|+|+|++|++++ |++|+|||+ +|+++.+|.+|... |++|+|+|||++|||||. ||+|+|
T Consensus 275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~-----V~~l~~s~d~~~l~s~s~-----------Dg~v~i 338 (340)
T d1tbga_ 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKI 338 (340)
T ss_dssp EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEE
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEeCCCCEEEEEcc-----------CCEEEE
Confidence 999999999999999 999999999 79999999999988 899999999999999987 999999
Q ss_pred Ee
Q 012410 386 SS 387 (464)
Q Consensus 386 Wd 387 (464)
||
T Consensus 339 Wd 340 (340)
T d1tbga_ 339 WN 340 (340)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-36 Score=273.12 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=206.3
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|..-|+++. +||+.||| ++.| ++|+|||+.+|++..++..|+. .+.+|+| |+++|++|+.
T Consensus 13 ~~~~~V~c~~--~d~~~l~s----gs~D------g~i~vWd~~~~~~~~~l~~H~~----~V~~v~~---~~~~l~s~s~ 73 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQKIVS----GLRD------NTIKIWDKNTLECKRILTGHTG----SVLCLQY---DERVIITGSS 73 (293)
T ss_dssp SSCCCEEEEE--CCSSEEEE----EESS------SCEEEEESSSCCEEEEECCCSS----CEEEEEC---CSSEEEEEET
T ss_pred CCCCCEEEEE--EcCCEEEE----EeCC------CeEEEEECCCCcEEEEEecCCC----CEeeeec---ccceeecccc
Confidence 4666688865 57899999 4566 7999999999998766655543 2336655 6789999999
Q ss_pred CCcEEEEeCCCCeEEEEecCCCEeEEEEe--------CCCceeEEEEEcCCCcEEEE---EeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSISDKHVQEIKIR--------SSSHVPLKILSIEDGTVLKV---FYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~t---l~~~~~~~~~V~F~~~~~~~ 275 (464)
|++|++|++.++...............+. ...++++.+|++.+...... +..+...+..+.|.+ ..
T Consensus 74 D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 150 (293)
T d1p22a2 74 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KY 150 (293)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TE
T ss_pred cccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cc
Confidence 99999999999998877663332222222 24778999999987765433 333334555556544 67
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
+++++.|++|++||+.+++++..+.+|...+..+.++ +..|++++ |++|+|||+ +++++..+.+|... +
T Consensus 151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----v-- 221 (293)
T d1p22a2 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----V-- 221 (293)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----E--
T ss_pred cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee-----e--
Confidence 7888999999999999999999999998888777664 56889998 999999999 69999999999876 4
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---------CeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---------G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
..+++++++|++|+. ||+|+|||+.+ .+|++++.+|++
T Consensus 222 ~~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~---------------------- 268 (293)
T d1p22a2 222 RCIRFDNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG---------------------- 268 (293)
T ss_dssp EEEECCSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS----------------------
T ss_pred eeccccceEEEEEcC-----------CCEEEEEECCCCccccccCCceeeEEecCCCC----------------------
Confidence 357889999999987 99999999744 568999999987
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+| |++.|||||.||+|+|||
T Consensus 269 ------------~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 269 ------------RVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ------------CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ------------CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 8999998 567899999999999998
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-36 Score=295.71 Aligned_cols=223 Identities=7% Similarity=0.117 Sum_probs=194.7
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t 255 (464)
+.+++|| |||+.||+|+.|++|+|||+.+++ ++.+|. ...|.+|+|+|+ .|++|+|||+.+++...+
T Consensus 10 It~~~~s-~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 10 ISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence 4489997 899999999999999999998886 556665 568999999983 789999999998887766
Q ss_pred Ee--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 256 FY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 256 l~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
+. ++...+.+++|+| ++..+++++.|++|++|++..+. +.....+|...|.+++|+|||++||+++ |++|++
T Consensus 89 ~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v 167 (371)
T d1k8kc_ 89 LVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167 (371)
T ss_dssp EECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence 54 5556789999999 46788889999999999988765 3456778999999999999999999999 999999
Q ss_pred EeCC-------------------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 329 WNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 329 Wd~~-------------------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
||.. ++++.++.+|..+ |.+++|+|||++||+++. |++|++||+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~s~~~-----------d~~i~iwd~~ 231 (371)
T d1k8kc_ 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-----VHGVCFSANGSRVAWVSH-----------DSTVCLADAD 231 (371)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----EEEEEECSSSSEEEEEET-----------TTEEEEEEGG
T ss_pred EeeccCccccccccccccccccceeeeeeccCccCc-----EEEEEeeccccccccccc-----------CCcceEEeee
Confidence 9962 4578888999998 899999999999999987 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+++++.++.+|.. .|.+|+|+|||+.||+|+ |+.+++|.
T Consensus 232 ~~~~~~~~~~~~~----------------------------------~v~s~~fs~d~~~la~g~-d~~~~~~~ 270 (371)
T d1k8kc_ 232 KKMAVATLASETL----------------------------------PLLAVTFITESSLVAAGH-DCFPVLFT 270 (371)
T ss_dssp GTTEEEEEECSSC----------------------------------CEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred cccceeeeecccc----------------------------------cceeeeecCCCCEEEEEc-CCceEEEE
Confidence 9999999999986 899999999999999877 67666664
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-35 Score=270.06 Aligned_cols=277 Identities=14% Similarity=0.243 Sum_probs=219.9
Q ss_pred eecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEE
Q 012410 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~Va 192 (464)
|+..+-++...|. +|.+.|.+ +++++|+.||| ++.| ++|+|||+.+|++..++..|+ +.+.+|+
T Consensus 1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~~l~s----gs~D------g~i~vWd~~~~~~~~~~~~h~----~~V~~v~ 64 (342)
T d2ovrb2 1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGNRIVS----GSDD------NTLKVWSAVTGKCLRTLVGHT----GGVWSSQ 64 (342)
T ss_dssp HHHSCCCCCEEEE-CSTTSCEE-EEEEETTEEEE----EETT------SCEEEEETTTCCEEEECCCCS----SCEEEEE
T ss_pred CCCCCCCcCEEEC-CcCCceEE-EEEECCCEEEE----EeCC------CeEEEEECCCCCEEEEEeCCC----CCEEEEE
Confidence 5555667788896 58776766 47788999999 4456 799999999999876665554 3345899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
|+ |+ +|++|+.|+++++|+........... ...+....+.+ ..|.+|.+|+.++++....+......
T Consensus 65 ~~-~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-- 139 (342)
T d2ovrb2 65 MR-DN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA-- 139 (342)
T ss_dssp EE-TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--
T ss_pred eC-CC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccc--
Confidence 97 54 99999999999999999888776555 34455555543 47889999999999999888743222
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
...+.+ ....+++++.|++|++||+..++++..+.+|...+.. ++++++.|++++ |++|++||+ .+++++++.+|
T Consensus 140 ~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~ 216 (342)
T d2ovrb2 140 VRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216 (342)
T ss_dssp EEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ceeecc-ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence 222223 3478888999999999999999999999999766554 566899999999 999999999 69999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccc
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
... |.++++ ++++||+|+. |++|+|||+.+++....+.+|..+.
T Consensus 217 ~~~-----v~~~~~--~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~~~~~------------------ 260 (342)
T d2ovrb2 217 QSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNKHQ------------------ 260 (342)
T ss_dssp CSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTSCS------------------
T ss_pred ccc-----eeEEec--CCCEEEEEcC-----------CCEEEEEecccccccccccccceee------------------
Confidence 987 666655 5679999987 9999999999999999998876411
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+.+++|+ ++.|+||+.||+|+|||.
T Consensus 261 -------------~~~~~~~~~--~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 261 -------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp -------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -------------eceeecccC--CCeeEEEcCCCEEEEEEC
Confidence 156666665 579999999999999983
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-36 Score=280.83 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=208.0
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
+++++++| .+|...|.+|+|+| |+| ++.| +++++|++.+++. .|+ ..+..++|+ +
T Consensus 2 ~~~~i~~l-~gH~~~I~~l~~s~----l~s----gs~D------g~v~~Wd~~~~~~-----~h~----~~V~~~~~~-~ 56 (287)
T d1pgua2 2 HDEVLKTI-SGHNKGITALTVNP----LIS----GSYD------GRIMEWSSSSMHQ-----DHS----NLIVSLDNS-K 56 (287)
T ss_dssp EEEEEEEE-CCCSSCEEEEETTT----TEE----EETT------SCEEETTTTEEEC-----CCC----SCEEEEECC-S
T ss_pred CcceeEEE-CCCCCceEEEEECc----EEE----EeCC------CeEEEEECCCCCC-----CCC----CCEEEEEec-C
Confidence 46889999 55999999999998 788 5566 7999999876542 333 334478896 5
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
++ .+++++.|+++|+|++.+.++ ...+..++++++ .+..+.+|+..++++++++... . ...++.
T Consensus 57 ~~-~~~s~s~D~~v~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 127 (287)
T d1pgua2 57 AQ-EYSSISWDDTLKVNGITKHEF-----GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-S--PGSAVS 127 (287)
T ss_dssp TT-CCEEEETTTEEEETTEEEEEC-----SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-S--CEEEEE
T ss_pred CC-eEEEEeecccccccccccccc-----ccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-c--eeeeee
Confidence 54 678999999999999765332 223445555442 4567899999999999998843 2 234555
Q ss_pred ccCCCeEEEEeC-CCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE-EeccCCC
Q 012410 270 EQFNEKLLVKQE-NENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT-SFEDHLL 344 (464)
Q Consensus 270 ~~~~~~lla~s~-D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~-tl~gH~~ 344 (464)
+ +++.+++++. +++|++|++.+.+....+. .|...+.+++|+|||++||+++ |++|++||+ +++.+. .+.+|..
T Consensus 128 ~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~ 206 (287)
T d1pgua2 128 L-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206 (287)
T ss_dssp E-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred c-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccc
Confidence 5 4577778775 4689999998877666554 5777899999999999999999 999999999 587765 5789988
Q ss_pred CcCCCCeeEEEECCC----------CCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCC
Q 012410 345 WHPDCNTNNIYITSD----------QDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 345 ~~~~~~v~svafSpD----------g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~ 413 (464)
. |.+++|+|+ +++|||||. |++|+|||+.+ ++++..+.+|..
T Consensus 207 ~-----v~~~~~~p~~~~~~~~~~~~~~l~sgs~-----------D~~i~iw~~~~~~~~~~~~~~h~~----------- 259 (287)
T d1pgua2 207 K-----INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD----------- 259 (287)
T ss_dssp C-----EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT-----------
T ss_pred c-----cceeeecccccccccccCCCCeeEeecC-----------CCeEEEEECCCCCeEEEEeCCCCC-----------
Confidence 7 899999875 468898886 99999999977 778999999987
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 414 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+||+ .|+|++.|++||||+
T Consensus 260 -----------------------~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 260 -----------------------GVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp -----------------------CEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred -----------------------CeEEEEECCCC-EEEEEECCCeEEEEE
Confidence 89999999997 599999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-34 Score=270.51 Aligned_cols=270 Identities=13% Similarity=0.149 Sum_probs=202.9
Q ss_pred eeEeecCCC-ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 121 ICFLNVSPD-EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 121 l~~ln~~~~-~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
..+|.+ |. .+|.++. ++|+.|+| ++.| ++|+|||+.+|++...+..|+ +.+.+|+|+ |++
T Consensus 5 ~~tL~G-H~~~vitc~~--~~~~~l~t----gs~D------g~i~vWd~~~~~~~~~l~~H~----~~V~~l~~s-~~~- 65 (355)
T d1nexb2 5 RTTLRG-HMTSVITCLQ--FEDNYVIT----GADD------KMIRVYDSINKKFLLQLSGHD----GGVWALKYA-HGG- 65 (355)
T ss_dssp EEEEEC-CSSSCEEEEE--EETTEEEE----EETT------TEEEEEETTTTEEEEEEECCS----SCEEEEEEE-TTT-
T ss_pred cEEECC-cCCCcEEEEE--ECCCEEEE----EeCC------CeEEEEECCCCcEEEEEECCC----CCEEEEEEc-CCC-
Confidence 346755 64 4555554 56789999 4566 799999999999876555444 445589998 665
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecC--C--CEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCc------
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISD--K--HVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLH------ 261 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~--~--~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~------ 261 (464)
+|+||+.|++|++|++.++++...... . .+..+.+++ +.|++|++||++++..+........
T Consensus 66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 899999999999999999998876652 1 233444443 4789999999998877654321000
Q ss_pred --------------ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 262 --------------RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 262 --------------~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
....+.....++..++.+..|+.|++||+.+++.+....++...+.++.|+|+++++++++ |++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 225 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceE
Confidence 0112222222356677788999999999999999999999999999999999999999999 9999
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
++||. +|+++..+++|... |.+++|+ +++|++|+. ||+|++||+.++++. +.+|..
T Consensus 226 ~i~d~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~~~~~-----------dg~i~iwd~~~~~~~--~~~~~~--- 282 (355)
T d1nexb2 226 RIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRK--FSYHHT--- 282 (355)
T ss_dssp EEEETTTCCEEEEECCCSSC-----CCEEEEC--SSEEEEECT-----------TSEEEEEETTTCCEE--EEEECT---
T ss_pred Eeeecccccccccccccccc-----ccccccc--cceeeeeec-----------cccccccccccccee--cccccC---
Confidence 99999 69999999999987 7788886 479999986 999999999888764 455654
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEE-EEEcCCCCEEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-lafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+.+ .+|+|+++.|++|+ |++|+|||.
T Consensus 283 -------------------------------~~~~~~~~~~~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 283 -------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp -------------------------------TCCCCCEEEECSSEEEEEE-TTEEEEEET
T ss_pred -------------------------------CceEEEEEcCCCCEEEEEe-CCEEEEEEC
Confidence 2223 46788999888876 899999983
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.8e-34 Score=267.16 Aligned_cols=267 Identities=11% Similarity=0.089 Sum_probs=209.9
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.||.+++||+.+|+++..+...|...|.+++|+|+|+.+++ +.| .++++|
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~----~~d-------~~v~~~ 81 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV----SWD-------DHLKVV 81 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE----ETT-------TEEEEE
T ss_pred CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc----cce-------eeEEEe
Confidence 356666665 8899999999999999999999999997789999999999999986655 345 489999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC--------C
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS--------S 238 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s--------~ 238 (464)
++...... ....+...+...+..++|+ |||+++++++ ++++++|+. ++.........+..++|+|+ .
T Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 82 PAGGSGVD-SSKAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSH--GKLTEVPISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp CSSSSSSC-TTSCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEET--TEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ccCCcccc-ccccccccccccccccccc-cccccccccc-ccccccccc--ccccccccccccccccccccccccccccc
Confidence 97655433 2222332344556689997 8999888665 568999994 44555555677889999884 6
Q ss_pred ceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcCC
Q 012410 239 HVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~Fspd 314 (464)
|+.|++||++++++..... .+...+.+++|+| ++..+++++.|++|++||+.++..+. .+.+|...|.+++|+|+
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998765433 4457889999998 46677778999999999999988764 56789999999999999
Q ss_pred CcEEEEEe-CCeEEEEeC-CCce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|++||+++ |++|+|||+ +++. +.....|... .|+.+ ++|++++|+|+|. |++|||||+
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~s~s~-----------D~~i~iWdl 297 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS----SVNSV-IWLNETTIVSAGQ-----------DSNIKFWNV 297 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS----CEEEE-EEEETTEEEEEET-----------TSCEEEEEC
T ss_pred ccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC----cEEEE-EECCCCEEEEEeC-----------CCEEEEEec
Confidence 99999999 999999998 4543 3444445443 16666 4567889999986 999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-34 Score=265.64 Aligned_cols=276 Identities=11% Similarity=-0.012 Sum_probs=200.2
Q ss_pred ecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe
Q 012410 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 204 (464)
Q Consensus 125 n~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg 204 (464)
..+|.+.|.+|+|+|+|+.||++| .| ++++||++..+.....+... .++...+.+|+|+++++.+|++|
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s----~D------g~v~iwd~~~~~~~~~~~~~-~~h~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITS----WD------GSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEE
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEE----CC------CeEEEEEccCCCcceEEEEe-cCCCCCEEEEEEeCCCCCEEEEc
Confidence 367999999999999999999944 56 79999999887653322111 12334455899985567899999
Q ss_pred cCCCcEEEEeCCCCeEEEEec--CCC-EeEEEEeC--------CCceeEEEEEcCCCcEEEEEee----C--CcceeeEE
Q 012410 205 AQDSIYKVFDLKNYTMLYSIS--DKH-VQEIKIRS--------SSHVPLKILSIEDGTVLKVFYH----L--LHRNKKVD 267 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~--~~~-V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~----~--~~~~~~V~ 267 (464)
+.|++|++|++.++....... ... .....+.+ +.+.++++||+.++.....+.. + ........
T Consensus 76 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred ccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 999999999999888776654 222 22222322 4789999999976654443331 1 11223444
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEE-EcCCCcEEEEEe-CCeEEEEeCC-Cce------
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFI-FLYENQLFLTFR-NRTVAVWNFR-GEL------ 335 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~-FspdgqllaS~s-D~TIklWd~~-Ge~------ 335 (464)
+.+ .+..+++++.|++|++||+.+++... ....+...+.+.. +++++..+++++ |+.|++|+++ ...
T Consensus 156 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~ 234 (342)
T d1yfqa_ 156 MDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred eec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence 444 35677889999999999998877432 2233334455544 567888999999 9999999973 211
Q ss_pred EEE---------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 336 VTS---------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 336 l~t---------l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
... ..+|... |++|+|+|+|++||||+. ||+|+|||+.++++++++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~lasg~~-----------Dg~v~vWD~~~~~~l~~~~~~~----- 293 (342)
T d1yfqa_ 235 RFAFRCHRLNLKDTNLAYP-----VNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFAKFN----- 293 (342)
T ss_dssp CEEEECCCCCTTCCSSCCC-----EEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECCCCS-----
T ss_pred cceeeeeeeccCCCccccc-----ceeEEecCCccEEEEECC-----------CCEEEEEECCCCcEEEEecCCC-----
Confidence 111 1234333 889999999999999987 9999999999999999986553
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+..++|+|+|+.||+|+.|.++++|.
T Consensus 294 ------------------------------~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 294 ------------------------------EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp ------------------------------SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred ------------------------------CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 345688999999999999999998885
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-33 Score=272.08 Aligned_cols=267 Identities=11% Similarity=0.117 Sum_probs=208.9
Q ss_pred ccceeehhccCC-eEEeeecccc--cEeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 97 ARDIVFALAHSG-VCAAFSRETN--RRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 97 ag~~l~~l~~~g-~~~~~~~~~g--~~l~~ln~~~~~~i~Sv~fs~--~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
.|+.|+..+.+. +++.|+.... ..+..+.+.+...|.+|+|+| +|.+|++ ++.| ++++||++..+
T Consensus 28 ~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las----gs~D------g~i~iWd~~~~ 97 (325)
T d1pgua1 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDES------GKVIVWGWTFD 97 (325)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETT------SEEEEEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE----EeCC------CCEEEeeecCC
Confidence 367776654333 5677764443 446667565567899999998 5678888 4566 79999999888
Q ss_pred CCCCcccceee----ccccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC------
Q 012410 172 KPDSGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------ 237 (464)
Q Consensus 172 ~~~~~~~l~~~----~~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------ 237 (464)
+.......... .+.+.+..|+|+ |||+.|++++. |+.+++|+..+++++.++. ...|.+++|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred cceeeeecccccccccccCcEEEEEEC-CCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence 76543332221 122344589997 89999887654 7789999999999999886 568999999873
Q ss_pred ---CceeEEEEEcCCCcEEEEEee---CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 238 ---SHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~~---~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
.|+.|++||+++++...++.. +...+.+|+|+|+.+..+++++.|++|+|||+++++++.++.+|...+.++.|
T Consensus 177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccccee
Confidence 688999999999998887762 33457999999965666777899999999999999999999999988877777
Q ss_pred c---CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEE
Q 012410 312 L---YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 312 s---pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+ |||++|+|++ |++|+|||+ +|++++++..|...+. +..+++.++ +.+|+|+|. ||+|+|
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~s~-----------dg~i~v 322 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG---NQQVGVVATGNGRIISLSL-----------DGTLNF 322 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG---GCEEEEEEEETTEEEEEET-----------TSCEEE
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc---CeEEEEEECCCCEEEEEEC-----------CCEEEE
Confidence 7 8999999999 999999999 6999999998877543 345555543 347889987 999999
Q ss_pred EeC
Q 012410 386 SSI 388 (464)
Q Consensus 386 Wdi 388 (464)
|||
T Consensus 323 wdl 325 (325)
T d1pgua1 323 YEL 325 (325)
T ss_dssp EET
T ss_pred EEC
Confidence 996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-33 Score=251.70 Aligned_cols=255 Identities=11% Similarity=0.163 Sum_probs=205.9
Q ss_pred ceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 90 ~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
.|.-+-+.|++|++++.||++++||+.++++++++. +|...|.+|.| +++.|++ ++.| +++++|++.
T Consensus 17 ~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s----~s~D------~~i~~~~~~ 83 (293)
T d1p22a2 17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIIT----GSSD------STVRVWDVN 83 (293)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEE----EETT------SCEEEEESS
T ss_pred CEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeec----cccc------ccccccccc
Confidence 344444459999999999999999999999999995 58888999987 5688988 4456 799999998
Q ss_pred cCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE---EEec--CCCEeEEEEeC------CC
Q 012410 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKIRS------SS 238 (464)
Q Consensus 170 ~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l---~tl~--~~~V~~Vafs~------s~ 238 (464)
.+........ .......+. +....++++..++++++||+.+.... ..+. ...|..+.+.+ +.
T Consensus 84 ~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~ 156 (293)
T d1p22a2 84 TGEMLNTLIH------HCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG 156 (293)
T ss_dssp SCCEEEEECC------CCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred cccccccccc------ccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceecccccccccC
Confidence 8876321111 112244554 56678899999999999999876643 2333 35677777754 58
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
|++|++||+.+++++.++.++...+..+.|.+ ..+++++.|++|+|||+++++++....+|...+.. +++++++|
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l 231 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI 231 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEE
T ss_pred CCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEE
Confidence 99999999999999999997667777777754 68888999999999999999999999999877764 67899999
Q ss_pred EEEe-CCeEEEEeC-C---------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 319 LTFR-NRTVAVWNF-R---------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 319 aS~s-D~TIklWd~-~---------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++++ |++|+|||+ . ..++++|.+|... |++|+| |+++|||||. ||+|+|||
T Consensus 232 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~-----V~~v~~--d~~~l~s~s~-----------Dg~i~iWD 293 (293)
T d1p22a2 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------DDTILIWD 293 (293)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------SSEEEEEC
T ss_pred EEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC-----EEEEEE--cCCEEEEEec-----------CCEEEEeC
Confidence 9999 999999995 1 4578999999988 778888 5788999987 99999998
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-33 Score=273.61 Aligned_cols=235 Identities=12% Similarity=0.063 Sum_probs=165.3
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-------EEEec-CCCEeE---------------EEEeCCCceeEEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSIS-DKHVQE---------------IKIRSSSHVPLKIL 245 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-------l~tl~-~~~V~~---------------Vafs~s~d~tIklW 245 (464)
.+|+++ +++|+|||.|++|||||.++.+. +.... ...+.. +..+.+.|++|++|
T Consensus 18 ~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w 94 (393)
T d1sq9a_ 18 FSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94 (393)
T ss_dssp EEEEEC---SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred EEEEEe---CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEE
Confidence 378885 36899999999999999876531 11111 111111 11133468999999
Q ss_pred EcCCCcEEEEEe----------eCCcceeeEEEEccCC----CeEEEEeCCCeEEEEECCCCc-----------------
Q 012410 246 SIEDGTVLKVFY----------HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAE----------------- 294 (464)
Q Consensus 246 di~tG~~l~tl~----------~~~~~~~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~----------------- 294 (464)
++..+.....+. .+.+..+.+++.+... ..+++++.|++|++||+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 174 (393)
T d1sq9a_ 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174 (393)
T ss_dssp EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred EccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecc
Confidence 987554332221 0123457788876432 356668899999999975321
Q ss_pred -EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe------ccCCCCcCCCCeeEEEECCCCCEEEE
Q 012410 295 -LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF------EDHLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 295 -~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl------~gH~~~~~~~~v~svafSpDg~~LaS 365 (464)
.......+...+.+++|+||| +|||++ |++|+|||+ +|+++.++ .+|..+ |++|+|||||++||+
T Consensus 175 ~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~-----V~~l~~spdg~~l~s 248 (393)
T d1sq9a_ 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-----IRSVKFSPQGSLLAI 248 (393)
T ss_dssp EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC-----EEEEEECSSTTEEEE
T ss_pred cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccce-----EEEcccccccceeee
Confidence 122334556678899999998 789999 999999999 69887654 578887 999999999999999
Q ss_pred EecCCCccccccCCCC---eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 366 YCKAEPEDQWMEGSAG---SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 366 gs~~~~~~~~~~s~Dg---tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
||. |+ .|+|||+.+|+++.+|........ .......+...|++|+
T Consensus 249 gs~-----------D~t~~~i~lwd~~~g~~~~~l~~~~~~~~---------------------~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 249 AHD-----------SNSFGCITLYETEFGERIGSLSVPTHSSQ---------------------ASLGEFAHSSWVMSLS 296 (393)
T ss_dssp EEE-----------ETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBSSCEEEEE
T ss_pred ecC-----------CCCcceeeecccccceeeeeecccccccc---------------------ceeeeecccCceeeec
Confidence 997 65 599999999999999974322000 0000001112899999
Q ss_pred EcCCCCEEEEeeCCCcEEeccC
Q 012410 443 YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+|||+.|||||.|++|||||.
T Consensus 297 fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 297 FNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp ECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCCCeeEEECCCCEEEEEEC
Confidence 9999999999999999999984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.7e-33 Score=283.05 Aligned_cols=316 Identities=9% Similarity=0.053 Sum_probs=216.1
Q ss_pred eeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
++.+...+|.+++||..+++.+.+++. +.. +.+|+|||||+.|+++| .| +++++||+.+|++.....+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~-g~~-~~~vafSPDGk~l~~~~----~d------~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDT-GYA-VHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEEC-CSS-EEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC-CCC-eeEEEECCCCCEEEEEe----CC------CCEEEEEccCCceeEEEEE
Confidence 456788899999999999999999976 444 89999999999998844 34 6999999999997432221
Q ss_pred eee-ccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEecC-------------CCEeEEEEeCCC------
Q 012410 180 FES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-------------KHVQEIKIRSSS------ 238 (464)
Q Consensus 180 ~~~-~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~~-------------~~V~~Vafs~s~------ 238 (464)
-.. ++...+.+++|+ |||++| +++..|+++++||.++++++..+.. .....++++++.
T Consensus 102 ~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 102 KIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp ECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred eCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence 111 122333367886 899987 5556899999999999999876541 234455555431
Q ss_pred ---ceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccC--CCceEEEEE
Q 012410 239 ---HVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE--FMTPSAFIF 311 (464)
Q Consensus 239 ---d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh--~~~v~sv~F 311 (464)
...+.+++..+++.+.. ...+......++|.|+ +.+++++. .+..+.+||..+++++...... ........|
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (426)
T d1hzua2 181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259 (426)
T ss_dssp ETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTT-SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE
T ss_pred cCCCCeEEEEEeccccceeeEEeccCCccEeeeECCC-CcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee
Confidence 23344444444443322 2233456688999984 56666654 7888999999999998765432 222333344
Q ss_pred cCCCc--EEE-EEe-CCeEEEEeC--------CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 312 LYENQ--LFL-TFR-NRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 312 spdgq--lla-S~s-D~TIklWd~--------~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
.+++. .++ +.+ |++|.+|+. .++++.+|++|... +++|+|||||++|+......+ .++.
T Consensus 260 ~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~-----v~~v~~sPdg~~l~v~~~~~~----s~~~ 330 (426)
T d1hzua2 260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTFNP----DARI 330 (426)
T ss_dssp EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC-----CCCEECCTTCSEEEECCTTCS----SHHH
T ss_pred ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc-----eeEEEcCCCCceEEEeecCCC----Cccc
Confidence 43322 222 333 778888874 26899999999988 789999999999995321000 1123
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-E----ee
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-T----GN 454 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-S----gs 454 (464)
|+||+|||+.||++++++..+.. +...+++-..|++++|||||+.|+ | ++
T Consensus 331 ~~tv~vwd~~t~~~~~~~~~~~~-------------------------~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~ 385 (426)
T d1hzua2 331 SQSVAVFDLKNLDAKYQVLPIAE-------------------------WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 385 (426)
T ss_dssp HTCEEEEETTCTTSCCEEECHHH-------------------------HHCCCSSCCCEEEEEECSSSSEEEEEECCCTT
T ss_pred CCEEEEEECCCCCcCeEEeccch-------------------------hcccCCCCccEEEEEECCCCCEEEEEEecCCC
Confidence 89999999999999888754321 001112223799999999999774 4 35
Q ss_pred CCCcEEecc
Q 012410 455 RHGLVHVWS 463 (464)
Q Consensus 455 ~DgtVrlWd 463 (464)
.|++|+|||
T Consensus 386 ~~~~i~v~D 394 (426)
T d1hzua2 386 DSSALVVVD 394 (426)
T ss_dssp SCCEEEEEE
T ss_pred CCCeEEEEE
Confidence 799999998
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.1e-33 Score=266.14 Aligned_cols=294 Identities=12% Similarity=0.044 Sum_probs=219.8
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
-|++||+.+ .|.+.+|++.+|+.++. .|...|.++.|||||+.|+++| ..++ +++++|++.+|+...
T Consensus 14 dG~~~a~~~-~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~--~~~g------~~v~v~d~~~~~~~~- 80 (360)
T d1k32a3 14 DGDLIAFVS-RGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHG--TREG------DFLGIYDYRTGKAEK- 80 (360)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEE--ETTE------EEEEEEETTTCCEEE-
T ss_pred CCCEEEEEE-CCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEE--cCCC------CEEEEEECCCCcEEE-
Confidence 388888875 57899999877776553 4888899999999999999866 3333 789999998888632
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------------
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----------------- 237 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----------------- 237 (464)
+. .+...+..++|+ |||++|++++.|+++++|++.++++...+. ...+.+++|+|+
T Consensus 81 ---~~-~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~ 155 (360)
T d1k32a3 81 ---FE-ENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155 (360)
T ss_dssp ---CC-CCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred ---ee-CCCceEEeeeec-ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence 11 133445589997 899999999999999999999999887765 456888999874
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-------EEEcccCCCceEEE
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAF 309 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~gh~~~v~sv 309 (464)
.+..+++||++++++...+.+. +.+..++|+| ++..|+.++.|+++++||.....+ ...+..|...+..+
T Consensus 156 ~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (360)
T d1k32a3 156 YVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233 (360)
T ss_dssp CCEEEEEEEETTTTEEEECSCSS-SBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred ccccceeeeccccCceeeecccc-cccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence 3467999999999887766543 6778899998 567777789999999999877654 33444565666677
Q ss_pred EEcCCCcEEEEEe-CCe---EEEEeC--C-Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 310 IFLYENQLFLTFR-NRT---VAVWNF--R-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 310 ~FspdgqllaS~s-D~T---IklWd~--~-Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.|+|+++.++++. +.+ .++|.+ . |+. +....+|..+ +...++++++.++++++. +
T Consensus 234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----------~ 297 (360)
T d1k32a3 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI-----YSVPVHGEFAAYYQGAPE-----------K 297 (360)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEE-----EECCCCCSHHHHHHCCCC-----------C
T ss_pred eECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceE-----EEEEecCCCeeEEEecCC-----------C
Confidence 8899999888776 442 345543 3 332 2233333322 333334444455665554 9
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++|++||+.++++. .|.. .|.+++|||||+.|++++.||+|+
T Consensus 298 ~~i~~~d~~~~~~~----~~~~----------------------------------~v~~~~~SpDG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 298 GVLLKYDVKTRKVT----EVKN----------------------------------NLTDLRLSADRKTVMVRKDDGKIY 339 (360)
T ss_dssp EEEEEEETTTCCEE----EEEE----------------------------------EEEEEEECTTSCEEEEEETTSCEE
T ss_pred CEEEEEECCCCeEE----EecC----------------------------------CcCEEEECCCCCEEEEEECCCeEE
Confidence 99999999988753 3333 689999999999999999999999
Q ss_pred eccC
Q 012410 461 VWSN 464 (464)
Q Consensus 461 lWd~ 464 (464)
+||.
T Consensus 340 v~d~ 343 (360)
T d1k32a3 340 TFPL 343 (360)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9983
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-29 Score=235.05 Aligned_cols=240 Identities=11% Similarity=0.118 Sum_probs=192.1
Q ss_pred eehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce
Q 012410 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (464)
Q Consensus 101 l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~ 180 (464)
|++++.||++++||+.++. ..|...|.++++++++. ++++| .| .++++|++...+..
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~~-~~s~s----~D------~~v~~w~~~~~~~~------ 80 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQE-YSSIS----WD------DTLKVNGITKHEFG------ 80 (287)
T ss_dssp TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTTC-CEEEE----TT------TEEEETTEEEEECS------
T ss_pred EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCCe-EEEEe----ec------cccccccccccccc------
Confidence 8999999999999977654 46888899999998764 66633 44 59999998654421
Q ss_pred eeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------CCceeEEEEEcCCCcE
Q 012410 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 181 ~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-------s~d~tIklWdi~tG~~ 252 (464)
..|..++++ ++|..+++++ ++.+.+|+..+++++.++. ...+..++... ..++.|++|++.+.+.
T Consensus 81 -----~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~ 153 (287)
T d1pgua2 81 -----SQPKVASAN-NDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 153 (287)
T ss_dssp -----SCEEEEEEC-SSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred -----cceeeeeec-cCCceEEEee-cccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence 234478886 8998887665 5568899999999998876 33444443322 3456899999988777
Q ss_pred EEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCC----------CcEEEE
Q 012410 253 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYE----------NQLFLT 320 (464)
Q Consensus 253 l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~Fspd----------gqllaS 320 (464)
...+. .+...+.+++|+| ++..|++++.|+.|+|||+.+++.+. .+.+|...|.+++|+|+ +++|||
T Consensus 154 ~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s 232 (287)
T d1pgua2 154 SFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232 (287)
T ss_dssp EEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred eeeeeeccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEe
Confidence 77665 3446789999998 46678889999999999999999876 47899999999999875 568999
Q ss_pred Ee-CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 321 FR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 321 ~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
++ |++|+|||+ + ++++..+.+|... |++|+|+||+. |+|++. |++||||||
T Consensus 233 gs~D~~i~iw~~~~~~~~~~~~~~h~~~-----V~~v~~~~~~~-l~s~g~-----------D~~v~iW~i 286 (287)
T d1pgua2 233 GSLDTNIFIYSVKRPMKIIKALNAHKDG-----VNNLLWETPST-LVSSGA-----------DACIKRWNV 286 (287)
T ss_dssp EETTSCEEEEESSCTTCCEEETTSSTTC-----EEEEEEEETTE-EEEEET-----------TSCEEEEEE
T ss_pred ecCCCeEEEEECCCCCeEEEEeCCCCCC-----eEEEEECCCCE-EEEEEC-----------CCeEEEEEE
Confidence 99 999999998 5 7899999999988 89999999975 777775 999999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=9.1e-30 Score=259.72 Aligned_cols=327 Identities=10% Similarity=0.026 Sum_probs=242.1
Q ss_pred cce-eehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDI-VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~-l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.++ +.+.+.+|.+++||..+++.++.++.++ .+.+|+|||||++++++| .| .++++||+.+++....
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s----~d------g~v~~~d~~t~~~~~~ 98 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTV 98 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEc----CC------CCEEEEEeeCCCceEE
Confidence 445 5899999999999999999999997743 499999999999999855 34 5999999999886432
Q ss_pred ccceee-ccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-------------CCCEeEEEEeCC----
Q 012410 177 FALFES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-------------DKHVQEIKIRSS---- 237 (464)
Q Consensus 177 ~~l~~~-~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-------------~~~V~~Vafs~s---- 237 (464)
..+-.. ++.+...+++|| |||++| ++++.|++|+|||.++++++.++. ......|+++|+
T Consensus 99 ~~i~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~ 177 (432)
T d1qksa2 99 AEIKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 177 (432)
T ss_dssp EEEECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred EEEecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence 221111 112222245676 899986 789999999999999999987764 234667888774
Q ss_pred -----CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEccc-----CCCc
Q 012410 238 -----SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT-----EFMT 305 (464)
Q Consensus 238 -----~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~g-----h~~~ 305 (464)
.+.+|.+||..+++.+++.. ........++|+|+ +.++++++ .+++|.++|..+++.+..... |...
T Consensus 178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~ 256 (432)
T d1qksa2 178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 256 (432)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCC-CCEEEEeccccceEEEeecccceEEEEeccCccccccCc
Confidence 56789999999999877655 33345689999994 66677765 788999999999998876533 4455
Q ss_pred eEEEEEcCCCcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
...+.+++.|...++.. |++|.+|+.... .+.+|... |...+|+|+|..+++++. |.++
T Consensus 257 ~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---~~~~~~~~-----v~~~~~~~~g~~~~~~s~-----------p~~~ 317 (432)
T d1qksa2 257 GANFVHPTFGPVWATSHMGDDSVALIGTDPE---GHPDNAWK-----ILDSFPALGGGSLFIKTH-----------PNSQ 317 (432)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTT---TCTTTBTS-----EEEEEECSCSCCCCEECC-----------TTCS
T ss_pred ccceecCCCCceecccccCCceEEecccccc---cccccccE-----EEEEEEcCCCCeEEEEec-----------CCcc
Confidence 66677778888888776 899999997322 23566554 788999999999999875 8889
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccc-----ccccccCEEEEEEcCCCCEEEEee----
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST-----VGEALEDITSLFYDEERNEIYTGN---- 454 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~V~slafspDg~~LaSgs---- 454 (464)
+||+..++ .+|.. ....++.+++..+++...++..++|.. ..++...|.+++|||||++|+.+.
T Consensus 318 ~lw~~~~~------~~~~~-~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~ 390 (432)
T d1qksa2 318 YLYVDATL------NPEAE-ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK 390 (432)
T ss_dssp EEEEECTT------CSSHH-HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred ceeecccC------CCCCC-eeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCC
Confidence 99986543 23321 111234466777788888888888753 335566899999999999886553
Q ss_pred -CCCcEEeccC
Q 012410 455 -RHGLVHVWSN 464 (464)
Q Consensus 455 -~DgtVrlWd~ 464 (464)
.|+.|+|||.
T Consensus 391 ~~~g~i~i~D~ 401 (432)
T d1qksa2 391 DQESALVVVDD 401 (432)
T ss_dssp TSCCEEEEEET
T ss_pred CCCCcEEEEEC
Confidence 5788999983
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=6e-28 Score=223.23 Aligned_cols=246 Identities=9% Similarity=0.118 Sum_probs=203.7
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s- 237 (464)
.+|.+||+.+|+..+.+++ + ..|..|+|| |||++| ++++.|++|++||+++++++.++. ...+..++|+++
T Consensus 12 ~~v~v~D~~t~~~~~~i~~---g--~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIPV---G--SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (301)
T ss_dssp TEEEEEETTTTEEEEEEEC---S--SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEEC---C--CCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence 5899999999997654332 2 457789997 899977 688899999999999999999887 467889999773
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEE
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
.+..+.+|+.++++++..+.+. .....++|+|+ +..+++ ++.|+++.+||..+++++..+..+ ..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 162 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG 162 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred ccccccccccceeeecccccceeeeecccc-ccceEEEeecC-CCeeeeeeccccceeeeeccccceeeecccC-CCceE
Confidence 5678999999999999999865 45678899884 566655 458999999999999999988766 46889
Q ss_pred EEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 309 FIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 309 v~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
++|+|+++.++++. ++.+.+|+. .+++...+..+.. ..+++|+|||+.++.++. .+.+++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~v~~~--------~~~~~~v~v 228 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNV--------DKYFNTVSM 228 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEE--------CSSCCEEEE
T ss_pred EEeeccccceeeecccccccccccccceeeeecccccCC------cceeeccccccccccccc--------cceeeeeee
Confidence 99999999888877 578888888 4777777776654 568999999999877653 234789999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEeeCCCcEEeccC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWSN 464 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L-aSgs~DgtVrlWd~ 464 (464)
||+.++++++++..+. .+++|+|||||+.| ++++.|++|++||.
T Consensus 229 ~D~~t~~~~~~~~~~~-----------------------------------~~~~va~spdg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 229 IDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp EETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred eecCCCeEEEEEcCCC-----------------------------------CEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 9999999999997664 68999999999987 68889999999983
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=1.6e-26 Score=213.49 Aligned_cols=260 Identities=13% Similarity=0.136 Sum_probs=210.2
Q ss_pred hhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee
Q 012410 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (464)
Q Consensus 103 ~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~ 182 (464)
+...++.+.+||..+++.+..+..+ .. .++|+|+|||+.|++++ . .+ .++.+||+.++++...++..
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~~g-~~-p~~va~spdG~~l~v~~--~-~~------~~i~v~d~~t~~~~~~~~~~-- 73 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIPVG-SN-PMGAVISPDGTKVYVAN--A-HS------NDVSIIDTATNNVIATVPAG-- 73 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECS-SS-EEEEEECTTSSEEEEEE--G-GG------TEEEEEETTTTEEEEEEECS--
T ss_pred EECCCCEEEEEECCCCeEEEEEECC-CC-ceEEEEeCCCCEEEEEE--C-CC------CEEEEEECCCCceeeeeecc--
Confidence 4567889999999999999999663 33 78999999999887633 3 33 58999999999875433322
Q ss_pred ccccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCc
Q 012410 183 ESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGT 251 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~ 251 (464)
..|..++|+ ++|+ .++++..+..+++||+.+++++..+. ...+..++|+|+ .+.++.+|+..+++
T Consensus 74 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
T d1l0qa2 74 ---SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (301)
T ss_dssp ---SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ---ccccccccc-cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc
Confidence 345689998 7777 45677788999999999999998887 467788999874 56789999999999
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe----CCeE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTV 326 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s----D~TI 326 (464)
.+.++.+. .....++|.+. +..++++. .++.+.+|+....+....+..+ ..+..++|+|+|+.++.+. +++|
T Consensus 150 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v 226 (301)
T d1l0qa2 150 VINTVSVG-RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (301)
T ss_dssp EEEEEECC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred eeeecccC-CCceEEEeecc-ccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeee
Confidence 99999864 55688899884 56666655 6688889998888888887766 4688999999999876654 4689
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
++||. +++++.++..+.. ++.++|||||++| ++++. |++|++||+.||++++++.-
T Consensus 227 ~v~D~~t~~~~~~~~~~~~------~~~va~spdg~~l~va~~~-----------~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 227 SMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------CNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC
T ss_pred eeeecCCCeEEEEEcCCCC------EEEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCeEEEEEeC
Confidence 99999 7999999876643 6899999999987 56654 89999999999999999963
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-29 Score=231.65 Aligned_cols=268 Identities=8% Similarity=0.066 Sum_probs=192.6
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEe--ecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFL--NVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~l--n~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~ 164 (464)
.|..+-+. |++|++++.||++++||+.++.....+ ..+|...|.+|+|+|++. .|++ ++.| ++++
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s----g~~d------~~v~ 82 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV----GTVQ------GEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE----EETT------SCEE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE----cccc------ccee
Confidence 46666775 999999999999999998766533222 135888999999999865 4555 3455 7999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE----EEecC----CCEeEEEEe-
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSISD----KHVQEIKIR- 235 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l----~tl~~----~~V~~Vafs- 235 (464)
+|++..+........... .....+.+ .+++..+++++.|+++++||+.++... ..+.. .......+.
T Consensus 83 ~w~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNEA---NLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSSEEECBSCCC---CSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred eeeccccccccccccccc---cccccccc-ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 999988776432222211 11113444 368889999999999999998755432 22221 112222232
Q ss_pred -------CCCceeEEEEEcCCCcEEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE---------
Q 012410 236 -------SSSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--------- 296 (464)
Q Consensus 236 -------~s~d~tIklWdi~tG~~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l--------- 296 (464)
.+.|++|++||+.+++....+. ........+.+.+.++..+++++.|+.+.+|++......
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 2478999999998887655433 222345666776766677788999999999997654321
Q ss_pred E------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 297 E------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 297 ~------~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. ...+|...+.+++|+|++++|||++ ||+|+|||+ +++++.+|..|.. +..++|+|+|++||+++.
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~------~~~~~~s~~~~~l~~a~s 312 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNILCLATS 312 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS------SEEEEEEECSSEEEEEEE
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC------CEEEEEEeCCCEEEEEEc
Confidence 1 1245667889999999999999999 999999999 6999999976543 456899999999999986
Q ss_pred CCCccccccCCCCeEEEEeC
Q 012410 369 AEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi 388 (464)
|+++|+|..
T Consensus 313 -----------dd~~~~~~~ 321 (342)
T d1yfqa_ 313 -----------DDTFKTNAA 321 (342)
T ss_dssp -----------CTHHHHCSS
T ss_pred -----------CCcEEEeee
Confidence 889999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.1e-27 Score=223.93 Aligned_cols=279 Identities=10% Similarity=0.048 Sum_probs=210.3
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCC-CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~-~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.+++.+.+.++.+++||..+++.+..+.... ...+.+++|+|||+.+++++ +.+ ..+.+||+.+|++...
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~------~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEE
Confidence 3678899999999999999999999997643 34578999999999887643 344 5899999999998654
Q ss_pred ccceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 177 FALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 177 ~~l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
....... ....+..++|+ |||+.|+.+..+.....|... ..+..+.+||..+++++++
T Consensus 72 ~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~d~~~~~~~~~ 130 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFE--------------------VQPTRVALYDAETLSRRKA 130 (337)
T ss_dssp EECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEE--------------------ECCCEEEEEETTTTEEEEE
T ss_pred EecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeecc--------------------ccccceeeccccCCeEEEe
Confidence 4433321 12345589997 899999988877666555421 2356788999999999998
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-------------------
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ------------------- 316 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq------------------- 316 (464)
+... ..+..++|+| ++..+++++. .+.+||+.++++..++..+.. .....++|++.
T Consensus 131 ~~~~-~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (337)
T d1pbyb_ 131 FEAP-RQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp EECC-SSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred cccc-CCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeee
Confidence 8854 4567899988 4666666654 477899999998887655432 11222333332
Q ss_pred -----EEEEEe-CCeEEEEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 317 -----LFLTFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 317 -----llaS~s-D~TIklWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
.+...+ +..+.+||. +|++.. .+..|... +..++++|++.+++++ |++|++||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~i~v~d~ 267 (337)
T d1pbyb_ 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF-----YFSTAVNPAKTRAFGA-------------YNVLESFDL 267 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC-----EEEEEECTTSSEEEEE-------------ESEEEEEET
T ss_pred eeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc-----eEEEEecccceEEEEc-------------cccEEEEEC
Confidence 222233 557999999 688765 45566655 7789999999999865 789999999
Q ss_pred CCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 389 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 389 ~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.++++++++.. .. .+.+++|||||+.||+|+.|++|+|||.
T Consensus 268 ~~~~~~~~~~~-~~----------------------------------~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 268 EKNASIKRVPL-PH----------------------------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp TTTEEEEEEEC-SS----------------------------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCCcEEEEEcC-CC----------------------------------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999999854 32 6789999999999999999999999983
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=2.3e-27 Score=222.48 Aligned_cols=287 Identities=9% Similarity=0.001 Sum_probs=214.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.|++++++..++.+.+||..+++.+.++...+.....+|+|+|||+.+.++. ..+ .++.+||+.+|+....
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---~~~------~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFH 77 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEE---CCC------CcEEEEeCccCeeeee
Confidence 3899999999999999999999999999776666688999999999886633 344 6899999999987543
Q ss_pred ccceee--ccccCceEEEEeCCCCcEEEEec------------CCCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC-
Q 012410 177 FALFES--ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS- 237 (464)
Q Consensus 177 ~~l~~~--~~~~~~~~VaFs~pdGk~LaSgs------------~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s- 237 (464)
+..... .....|..++|+ |||+.|..++ .+..+++||..+++....+. ...+..+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156 (346)
T ss_dssp EESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred ecccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence 332211 122345689997 8999987664 58889999999887654332 244555555553
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
.+..+.+|++.+++.+.++..+ .....+.|+|. +..+++ ...++++.+++. ...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 217 (346)
T d1jmxb_ 157 SLYVAGPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPD-VLYFWPHQSPRHEFSMLYT-----------------IARFK 217 (346)
T ss_dssp CEEEESSSEEEECTTTCCEEEEECST-TCCCTTBCCCB-CCCCCCCCCTTCEEEEEEE-----------------EEEC-
T ss_pred EEEEeCCcceEEEccCCCEEEEEecC-CCccceEEecc-ccEEEEEecCCCceEeeee-----------------eeeec
Confidence 2346899999999999998754 44567777774 444444 446677777652 23345
Q ss_pred CCCcEEEEEe-CCeEEEEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 313 YENQLFLTFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 313 pdgqllaS~s-D~TIklWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
++...++++. +.++.+||. +|+... .+.+|... +..++++|++.+++++. +++|++||+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------------~~~v~v~d~~ 280 (346)
T d1jmxb_ 218 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL-----YFTGLRSPKDPNQIYGV------------LNRLAKYDLK 280 (346)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSC-----EEEEEECSSCTTEEEEE------------ESEEEEEETT
T ss_pred cCceeEeeccCCceEEEEECCCCceEEEEeecccce-----eEEEEEeCCCCEEEEec------------CCeEEEEECC
Confidence 6666677777 899999999 677544 56677765 78899999999998876 5789999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|++++.+... . .+++|+|||||+.||+|+.|++|++||.
T Consensus 281 ~~~~~~~~~~~-~----------------------------------~~~~va~s~DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 281 QRKLIKAANLD-H----------------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp TTEEEEEEECS-S----------------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred CCcEEEEEcCC-C----------------------------------CEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 99999988532 2 6789999999999999999999999983
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=2.1e-27 Score=224.47 Aligned_cols=254 Identities=11% Similarity=0.069 Sum_probs=186.0
Q ss_pred EEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeC
Q 012410 191 VEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 191 VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~ 259 (464)
=.|| | ||+++|+++. +.|.|||++++..++..+...|.+++|||+ ....|++||.++|+..+. ..+
T Consensus 8 ~~fS-P~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~-~~~ 84 (360)
T d1k32a3 8 EDFS-PLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-EEN 84 (360)
T ss_dssp EEEE-ECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC-CCC
T ss_pred cccc-CCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe-eCC
Confidence 4588 6 9999999874 689999999999988777889999999995 225899999999887654 444
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-----------CCeEEE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----------NRTVAV 328 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-----------D~TIkl 328 (464)
...+..++|+| ++.+|++++.|+++++||+.++++...+..|...+.+++|+|||++||.+. ++++++
T Consensus 85 ~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v 163 (360)
T d1k32a3 85 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163 (360)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred CceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence 57889999999 466777789999999999999999999999999999999999999999643 457999
Q ss_pred EeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-------EEEEEccCC
Q 012410 329 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-------CLAKINATN 401 (464)
Q Consensus 329 Wd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-------cl~tl~gh~ 401 (464)
||..+.....+..|... +..++|+|||++|++++. |+++++||..+.. ++..+..|.
T Consensus 164 ~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~s~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 227 (360)
T d1k32a3 164 YDMEGRKIFAATTENSH-----DYAPAFDADSKNLYYLSY-----------RSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227 (360)
T ss_dssp EETTTTEEEECSCSSSB-----EEEEEECTTSCEEEEEES-----------CCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred eccccCceeeecccccc-----cccccccCCCCEEEEEeC-----------CCceEcccccccceeeccccceEEEeccc
Confidence 99964444455556555 778999999999999986 9999999976543 455566666
Q ss_pred CCCCcccccCCCCCCcccccc------ccccccccccc--cc----cCEE---EEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 402 CSPKVDDELGSSSTGKSKKLN------KSSYIRSTVGE--AL----EDIT---SLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~l----~~V~---slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+....+++++...++.... ..+.+....++ .+ ..+. ..++++++..+++++.|+.|++||.
T Consensus 228 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 305 (360)
T d1k32a3 228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305 (360)
T ss_dssp TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred CccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence 544444555555443332211 11111111110 00 1222 2233344456788889999999984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.7e-26 Score=231.64 Aligned_cols=269 Identities=11% Similarity=-0.006 Sum_probs=191.7
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 136 ~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
.+++|.+.+..|+ .+++ .+|+|||+.+|++..+++.. ..|..|+|| |||++|++++.|++++|||+
T Consensus 25 ~~~~d~~~~~~V~--~~~d------g~v~vwD~~t~~~~~~l~~g-----~~~~~vafS-PDGk~l~~~~~d~~v~vwd~ 90 (426)
T d1hzua2 25 LNDLDLPNLFSVT--LRDA------GQIALVDGDSKKIVKVIDTG-----YAVHISRMS-ASGRYLLVIGRDARIDMIDL 90 (426)
T ss_dssp CSCCCGGGEEEEE--ETTT------TEEEEEETTTCSEEEEEECC-----SSEEEEEEC-TTSCEEEEEETTSEEEEEET
T ss_pred cccCCCCeEEEEE--EcCC------CEEEEEECCCCcEEEEEeCC-----CCeeEEEEC-CCCCEEEEEeCCCCEEEEEc
Confidence 3556656566555 6677 89999999999987665533 246699998 99999999999999999999
Q ss_pred CCCeEEEE--ec-CC----CEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE
Q 012410 216 KNYTMLYS--IS-DK----HVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 279 (464)
Q Consensus 216 ~tg~~l~t--l~-~~----~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~ 279 (464)
++++++.+ +. .. .+.+++|+|+ .+.++++||.+++++++.+.++...+..++|.+......++.
T Consensus 91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (426)
T d1hzua2 91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170 (426)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEE
Confidence 99987643 33 22 2445555553 567899999999999999886545555566655321223334
Q ss_pred eCCCeEEEE-----------ECCCCcEE-EEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCC
Q 012410 280 QENENLQIL-----------DVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 280 s~D~tIkIW-----------Dv~tg~~l-~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
+.|++..+| +...++.+ ....++...+..++|+|+|+++..+. +..+.+||. +++++.++.....
T Consensus 171 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (426)
T d1hzua2 171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 250 (426)
T ss_dssp CSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC
T ss_pred CCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc
Confidence 455444443 33333221 23345667889999999999888877 778999999 7999988876555
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-------CCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-------TGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-------tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
.++. ..+.|.+++...+.... .+.|++|.+|+.. +++++++|.+|..
T Consensus 251 ~~~~---~~~~~~~~~~~~~~~~~--------~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~--------------- 304 (426)
T d1hzua2 251 PHPG---RGANFVHPKYGPVWSTS--------HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--------------- 304 (426)
T ss_dssp CCCS---CCEEEEETTTEEEEEEE--------CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS---------------
T ss_pred cccc---ceeeeecCCCCceEEec--------cCCCceEEEeeccccccccccceEeEEEecCCC---------------
Confidence 4442 33455554443332221 2347888888754 3699999999986
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEE-------EeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-------TGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-------Sgs~DgtVrlWd 463 (464)
.|++|+|||||+.|| +|+.|++|+|||
T Consensus 305 -------------------~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 305 -------------------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp -------------------CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred -------------------ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 889999999999999 678899999998
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=6.2e-24 Score=216.18 Aligned_cols=280 Identities=10% Similarity=-0.056 Sum_probs=193.0
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec-CCC----EeEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-DKH----VQEIK 233 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~-~~~----V~~Va 233 (464)
.++.|||.++|++...++.. ..|..|+|| |||++|++++.|+++++||+.+++. ...+. ... +.+++
T Consensus 42 g~v~v~D~~t~~v~~~~~~g-----~~~~~v~fS-pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDTG-----YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp TEEEEEETTTCCEEEEEECS-----SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CEEEEEECCCCcEEEEEeCC-----CCeeEEEEC-CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence 79999999999997655422 246699998 9999999999999999999998874 34444 223 34444
Q ss_pred EeCC---------CceeEEEEEcCCCcEEEEEeeC-----------CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCC
Q 012410 234 IRSS---------SHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN 292 (464)
Q Consensus 234 fs~s---------~d~tIklWdi~tG~~l~tl~~~-----------~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~t 292 (464)
|||+ .+++|+|||.++|++++++..+ ..+...|.|+++ +..+++ .+.+++|.+||..+
T Consensus 116 ~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY-RPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS-SSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC-CCEEEEEEccCCeEEEEEccC
Confidence 4543 5679999999999999988632 123356788774 555555 46889999999999
Q ss_pred CcEEEEcc-cCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCC-CcCCCCeeEEEECCCCCEEEEEe
Q 012410 293 AELMEVSR-TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 293 g~~l~~l~-gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~-~~~~~~v~svafSpDg~~LaSgs 367 (464)
++.+++.. .+...+..++|+|||+++++++ +.+|.+||. +++++..+..... .+... ......++.|...++..
T Consensus 195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~~~~~~~ 273 (432)
T d1qksa2 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR-GANFVHPTFGPVWATSH 273 (432)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT-CEEEEETTTEEEEEEEB
T ss_pred CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc-ccceecCCCCceecccc
Confidence 98776543 3446789999999999887777 779999999 5887776653221 22211 34455566666666553
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc--cccCEEEEEEcC
Q 012410 368 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE--ALEDITSLFYDE 445 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~V~slafsp 445 (464)
. .|++|.+|+..+.. +.+|...+...++++++..+++....++..+|..... .-....++++ |
T Consensus 274 l----------g~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-p 338 (432)
T d1qksa2 274 M----------GDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-F 338 (432)
T ss_dssp S----------SSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-E
T ss_pred c----------CCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-E
Confidence 2 38999999876542 1222211112233344455556666666667653321 1112345666 9
Q ss_pred CCCEEEEeeCCCcEEecc
Q 012410 446 ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs~DgtVrlWd 463 (464)
||++|++|+.|+++++|+
T Consensus 339 Dg~~la~~s~d~~~k~w~ 356 (432)
T d1qksa2 339 DIKAMTGDGSDPEFKTLP 356 (432)
T ss_dssp EGGGCCCSSSCCCEEEEC
T ss_pred echhhcccccCCceEecc
Confidence 999999999999999997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=2.2e-22 Score=193.52 Aligned_cols=285 Identities=7% Similarity=-0.022 Sum_probs=198.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec-
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA- 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs- 205 (464)
.++..+.+++++|||+.+++.+.-. .+ ...++.+||..+|+....+.. +....++|| |||++|+.++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~-~~----~~~~v~v~D~~tg~~~~~~~~------~~~~~~a~S-pDG~~l~va~~ 85 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAH-HS----AIIQQWVLDAGSGSILGHVNG------GFLPNPVAA-HSGSEFALAST 85 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccc-cC----CCceEEEEECCCCCEEEEEeC------CCCccEEEc-CCCCEEEEEee
Confidence 4667799999999999987743111 10 014688899999997653321 222369998 8999999875
Q ss_pred ---------CCCcEEEEeCCCCeEEEEecC--CC-------EeEEEEeCC----------CceeEEEEEcCCCcEEEEEe
Q 012410 206 ---------QDSIYKVFDLKNYTMLYSISD--KH-------VQEIKIRSS----------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 206 ---------~D~tiKlWdl~tg~~l~tl~~--~~-------V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~ 257 (464)
.|++|+|||+.+++++..+.. .. ...++|+|+ .+..+.+|+.++++.+....
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS 165 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec
Confidence 467899999999999887652 21 245677764 34567888888877766553
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC------CceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~------~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
....+.|++.....+++.+.|+++.+||..++++..+...+. .....+.+++++.+++.+.++++.+|+.
T Consensus 166 ----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 241 (373)
T d2madh_ 166 ----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI 241 (373)
T ss_pred ----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEc
Confidence 236788888533344557899999999999999887654432 2345566788887776655999999998
Q ss_pred C-Cce--EEEeccCCCCc------CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 332 R-GEL--VTSFEDHLLWH------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 332 ~-Ge~--l~tl~gH~~~~------~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
. ++. +.++..+.... +. ....++++||+..++.... ....-.....+++|.+||+.+|+.++.+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~- 318 (373)
T d2madh_ 242 SAAGATNKAPIDALSGGRKADTWRPG-GWQQVAYLKSSDGIYLLTS-EQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH- 318 (373)
T ss_pred CCCeEEEEEeeccccCcEEeeeeccC-cceeeEEecCCCeEEEecC-CCceEEeecCCCeEEEEECCCCcEEEEecCCC-
Confidence 4 543 33444433221 11 1345788888887765432 11111333457899999999999999985432
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE--EEEeeCCCcEEeccC
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWSN 464 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~--LaSgs~DgtVrlWd~ 464 (464)
.+.+++|||||+. +++++.|++|+|||.
T Consensus 319 ----------------------------------~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 319 ----------------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ----------------------------------CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 6889999999995 478999999999984
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=3.5e-21 Score=185.02 Aligned_cols=273 Identities=7% Similarity=-0.091 Sum_probs=193.0
Q ss_pred CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec---
Q 012410 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE--- 183 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~--- 183 (464)
.+.+.+||..+|+.+.+++.+. ...++|||||+.|++++.......+...-.++.+||..+|++..........
T Consensus 46 ~~~v~v~D~~tg~~~~~~~~~~---~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 122 (373)
T d2madh_ 46 IIQQWVLDAGSGSILGHVNGGF---LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred CceEEEEECCCCCEEEEEeCCC---CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE
Confidence 3568899999999999996533 3479999999999997755444333344478999999999986543333211
Q ss_pred cccCceEEEEeCCCCcEEEEe--cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC---------CCceeEEEEEcCCCcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS---------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSg--s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~---------s~d~tIklWdi~tG~~ 252 (464)
...+|..++|+ |||+.++.. ..+..+.+|+..+++.+.... ....++|+| ..|+++.+|+..++++
T Consensus 123 ~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~ 199 (373)
T d2madh_ 123 VGPYSWMNANT-PNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred eccCCCcEEEE-eCCCcEEEEEEcCCCceEEeeccCCeEEEEec--cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence 23455679998 899976654 456789999999888765543 345666665 3678899999999999
Q ss_pred EEEEeeCCc----ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCCC----------ceEEEEEcCCCc
Q 012410 253 LKVFYHLLH----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFM----------TPSAFIFLYENQ 316 (464)
Q Consensus 253 l~tl~~~~~----~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~~----------~v~sv~Fspdgq 316 (464)
..+...... ...........++.++..+.|+++.+|+..+++... ....+.. ....++++||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 279 (373)
T d2madh_ 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred eEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence 987763211 112222222224667777899999999988876432 2222221 123345555555
Q ss_pred EE----------EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE--EEEEecCCCccccccCCCCe
Q 012410 317 LF----------LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 317 ll----------aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~--LaSgs~~~~~~~~~~s~Dgt 382 (464)
.+ ++.. +++|.+||. +|+.+.++... .. +..++|||||+. +++++. |++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~~-----~~~~a~spDG~~~l~vt~~~-----------d~~ 342 (373)
T d2madh_ 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HD-----VDAISVAQDGGPDLYALSAG-----------TEV 342 (373)
T ss_pred eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-CC-----eeEEEECCCCCEEEEEEeCC-----------CCe
Confidence 43 4455 789999999 79999988643 33 679999999994 466665 999
Q ss_pred EEEEeCCCCeEEEEEccCCC
Q 012410 383 INVSSILTGKCLAKINATNC 402 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~ 402 (464)
|+|||+.||+.++++.+|..
T Consensus 343 v~v~D~~tg~~~~~~~~~g~ 362 (373)
T d2madh_ 343 LHIYDAGAGDQDQSTVELGS 362 (373)
T ss_pred EEEEECCCCCEEEEECCCCC
Confidence 99999999999999998865
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=6.7e-22 Score=187.92 Aligned_cols=273 Identities=11% Similarity=0.044 Sum_probs=187.4
Q ss_pred cCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec--
Q 012410 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-- 183 (464)
Q Consensus 106 ~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-- 183 (464)
....+.+||..+|+.+.++..+.. ..++|||||+.|++++.....-...-.-..+.+||..+|++.....+....
T Consensus 26 ~~~~v~v~D~~tg~~~~~~~~g~~---~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~ 102 (355)
T d2bbkh_ 26 AVTQQFVIDGEAGRVIGMIDGGFL---PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102 (355)
T ss_dssp SSEEEEEEETTTTEEEEEEEECSS---CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CcCeEEEEECCCCcEEEEEECCCC---CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence 455789999999999999966432 379999999999987754322111111268999999999986544333211
Q ss_pred -cccCceEEEEeCCCCcEEEEe--cCCCcEEEEeCCCCeEEEEecCC---------CEeEEEEeCCCceeEEEEEcCCCc
Q 012410 184 -SLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDK---------HVQEIKIRSSSHVPLKILSIEDGT 251 (464)
Q Consensus 184 -~~~~~~~VaFs~pdGk~LaSg--s~D~tiKlWdl~tg~~l~tl~~~---------~V~~Vafs~s~d~tIklWdi~tG~ 251 (464)
....|..++|+ |||+.+..+ +.+..+.+||+.+++.+.++... ....++|+++ ++..++....+.
T Consensus 103 ~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--g~~~~v~~~~~~ 179 (355)
T d2bbkh_ 103 LVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD--GSLAKVAFGTEG 179 (355)
T ss_dssp CBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT--SCEEEEECCSSS
T ss_pred ecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCC--CCEEEEEecCCC
Confidence 22345679998 899987655 55789999999999998877632 1234555543 333333333222
Q ss_pred EEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCC----------CceEEEEEcC
Q 012410 252 VLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEF----------MTPSAFIFLY 313 (464)
Q Consensus 252 ~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~----------~~v~sv~Fsp 313 (464)
.+..+. .....+..+++.+ .+..++..+.++++.+||+.+++... ...+|. .....++++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 258 (355)
T d2bbkh_ 180 TPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258 (355)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC
Confidence 222221 1112235567766 46778888999999999999987543 222221 1234588999
Q ss_pred CCcEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC--EEEEEecCCCccccccCC
Q 012410 314 ENQLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 314 dgqllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~--~LaSgs~~~~~~~~~~s~ 379 (464)
|+..+...+ + .+|.+||. +|+.+.+++.+.. +.+++|||||+ ++++++.
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~------~~~~a~spDG~~~l~v~~~~----------- 321 (355)
T d2bbkh_ 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE------IDSINVSQDEKPLLYALSTG----------- 321 (355)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEETT-----------
T ss_pred CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC------EEEEEEcCCCCeEEEEEECC-----------
Confidence 999887765 3 37999999 6999998875432 67899999998 4556554
Q ss_pred CCeEEEEeCCCCeEEEEEccCCC
Q 012410 380 AGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|++|++||++||+.+++|.++..
T Consensus 322 d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 322 DKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp TTEEEEEETTTCCEEEEECCCCS
T ss_pred CCEEEEEECCCCCEEEEEeCcCC
Confidence 99999999999999999987754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2.8e-21 Score=180.61 Aligned_cols=280 Identities=7% Similarity=-0.083 Sum_probs=193.1
Q ss_pred eEEEEec--ccee-ehhccCCeEEeeecccccEeeEeecCCCc-----eEEEEEEeeCCCEEEEEEeecCCCCcccc--e
Q 012410 91 VIEIVAA--RDIV-FALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDNFSSLK--C 160 (464)
Q Consensus 91 v~~~~~a--g~~l-~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-----~i~Sv~fs~~g~~l~svSa~~sddfs~L~--~ 160 (464)
+..+.+. |..+ ++...++.+.+||..+++.+..+...... .+.+++|+|||+.+.+++........... -
T Consensus 42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~ 121 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121 (346)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred cceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCc
Confidence 3455554 6665 55567899999999999999887553322 34689999999999886533221111111 1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH 239 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d 239 (464)
..+.+++..+|+.......+... .....+.++ ++|++++++ ..+.+||+.+++.+.++. ...+..++++|+..
T Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (346)
T d1jmxb_ 122 PRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAA-DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195 (346)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECC--SSCCCEEEC-TTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred ceEEEEecccceeeeEEEeeecc--CceEEEEec-CCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEecccc
Confidence 67888999988876554444422 223367775 789888764 458999999999999887 45667777776421
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEE
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~Fspdgqll 318 (464)
.+|....+.-.....+ ....+.+ ....+..+..++.+.+||+.+++... .+..|...+.+++++|++..+
T Consensus 196 ---~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (346)
T d1jmxb_ 196 ---YFWPHQSPRHEFSMLY-----TIARFKD-DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266 (346)
T ss_dssp ---CCCCCCCTTCEEEEEE-----EEEEC--------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred ---EEEEEecCCCceEeee-----eeeeecc-CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence 1222211111111100 0011111 12333445678899999999998765 456788889999999999999
Q ss_pred EEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 319 LTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 319 aS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++..+++|++||. +|+++.+++- ... +++++|||||++|++++. |++|++||+.|+++++++
T Consensus 267 ~~~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~va~s~DG~~l~v~~~-----------d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 267 IYGVLNRLAKYDLKQRKLIKAANL-DHT-----YYCVAFDKKGDKLYLGGT-----------FNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp EEEEESEEEEEETTTTEEEEEEEC-SSC-----CCEEEECSSSSCEEEESB-----------SSEEEEEETTTTEEEEEE
T ss_pred EEecCCeEEEEECCCCcEEEEEcC-CCC-----EEEEEEcCCCCEEEEEeC-----------CCcEEEEECccCCEEEEE
Confidence 8888778999999 7999988863 223 679999999999999986 999999999999999999
Q ss_pred ccCCC
Q 012410 398 NATNC 402 (464)
Q Consensus 398 ~gh~~ 402 (464)
+-+..
T Consensus 330 ~~p~g 334 (346)
T d1jmxb_ 330 KLPGG 334 (346)
T ss_dssp ECSSS
T ss_pred ECCCC
Confidence 86553
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.2e-20 Score=176.76 Aligned_cols=255 Identities=12% Similarity=0.121 Sum_probs=176.6
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEe----c-CCCEeEEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSI----S-DKHVQEIKI 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl----~-~~~V~~Vaf 234 (464)
++|++|++.........+.+. +-+.|..++|| |||++| +++..|++|++|++.+.....++ . ...+..|+|
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~ 90 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred CcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence 899999996543322222222 33667799998 999998 56667999999999865433222 1 356788999
Q ss_pred eCC---------CceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEE-----
Q 012410 235 RSS---------SHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME----- 297 (464)
Q Consensus 235 s~s---------~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~----- 297 (464)
+|+ .+.+|++|+.+++....... .+...+.+++|+|+ +.++++++ .+..|.+|+..+.....
T Consensus 91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec-ceeeeccccccceeeEEEeccCCcceeeece
Confidence 985 46789999998877665544 33355688999884 55666655 77899999987754221
Q ss_pred -EcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC--Cce---EEEec----cCCCCcCCCCeeEEEECCCCCEEEE
Q 012410 298 -VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GEL---VTSFE----DHLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 298 -~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~--Ge~---l~tl~----gH~~~~~~~~v~svafSpDg~~LaS 365 (464)
....+...+..++|++++..+.... .++..+|+.. ... ..++. ++... .....++++|||++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~d~~~~~~ 246 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIHITPDGRHLYA 246 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEEECTTSSEEEE
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcc---ccceeEEEecccCceee
Confidence 2233446788999999999987765 7788899863 222 22221 11111 11567899999998877
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 012410 366 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 445 (464)
Q Consensus 366 gs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp 445 (464)
... .++++.+|++....++.++.++... -..+++++|||
T Consensus 247 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~p~~~a~sp 285 (333)
T d1ri6a_ 247 CDR----------TASLITVFSVSEDGSVLSKEGFQPT-------------------------------ETQPRGFNVDH 285 (333)
T ss_dssp EET----------TTTEEEEEEECTTSCCEEEEEEEEC-------------------------------SSSCCCEEECT
T ss_pred ecc----------cCCeEEEEEEcCCCCEEEEEEEeCC-------------------------------CCCeeEEEEeC
Confidence 654 3889999999887777666555320 01567799999
Q ss_pred CCCEEEEee-CCCcEEecc
Q 012410 446 ERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs-~DgtVrlWd 463 (464)
||+.|+.++ .+++|+||+
T Consensus 286 DGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 286 SGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp TSSEEEEECTTTCEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 999877664 579999994
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=3.3e-21 Score=179.44 Aligned_cols=273 Identities=8% Similarity=0.005 Sum_probs=187.4
Q ss_pred eEEEEec--ccee-ehhccCCeEEeeecccccEeeEeecCCC----ceEEEEEEeeCCCEEEEEEeecCCCCcccce--e
Q 012410 91 VIEIVAA--RDIV-FALAHSGVCAAFSRETNRRICFLNVSPD----EVIRSLFYNKNNDSLITVSVYASDNFSSLKC--R 161 (464)
Q Consensus 91 v~~~~~a--g~~l-~~l~~~g~~~~~~~~~g~~l~~ln~~~~----~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~--~ 161 (464)
+..+.++ |++| ++...++.+.+||+.+|+.+..+..... ..+..++|+|+|+.+++++......++.... .
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence 4455665 7766 4567889999999999999998865322 2345799999999998866433333232222 5
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCCCce
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSSSHV 240 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s~d~ 240 (464)
.+.+|+..+++....++ ....+..++|+ |||++|++++.| +++||..++++..++.. .......++|+.
T Consensus 116 ~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s-~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-- 185 (337)
T d1pbyb_ 116 RVALYDAETLSRRKAFE-----APRQITMLAWA-RDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDV-- 185 (337)
T ss_dssp EEEEEETTTTEEEEEEE-----CCSSCCCEEEC-TTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBC--
T ss_pred ceeeccccCCeEEEecc-----ccCCceEEEEc-CCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCc--
Confidence 67788888887643322 22445589997 899999988754 78999999999888762 111222222221
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~Fspdgqlla 319 (464)
..+|-...+...... ....... ....+...+.++.+.+||..++++... +.+|...+..++++|++.+++
T Consensus 186 -~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T d1pbyb_ 186 -LAVWNQHESSGVMAT-------PFYTARK-DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp -CCCCCCCTTTTEEEE-------EEEEEBT-TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred -ceeeccccccceeee-------eeeeeee-ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence 111211111000000 0001111 123333455678899999999997764 556777888999999999886
Q ss_pred EEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 320 TFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 320 S~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+. |++|++||+ +++++.++. |... +.+++|||||++|++++. |++|+|||+.|++.+++|+
T Consensus 257 ~~-~~~i~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dG~~l~v~~~-----------~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 257 GA-YNVLESFDLEKNASIKRVP-LPHS-----YYSVNVSTDGSTVWLGGA-----------LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEE-CSSC-----CCEEEECTTSCEEEEESB-----------SSEEEEEETTTCCEEEEEE
T ss_pred Ec-cccEEEEECCCCcEEEEEc-CCCC-----EEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEEE
Confidence 55 689999999 699999885 3333 679999999999999876 9999999999999999996
Q ss_pred cC
Q 012410 399 AT 400 (464)
Q Consensus 399 gh 400 (464)
-.
T Consensus 319 ~~ 320 (337)
T d1pbyb_ 319 LP 320 (337)
T ss_dssp CG
T ss_pred CC
Confidence 54
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5.2e-20 Score=172.26 Aligned_cols=270 Identities=9% Similarity=0.032 Sum_probs=179.2
Q ss_pred eeehhccCCeEEeeecccccE---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 100 IVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~---l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+.++..+++.|++|++.++.. +.++ .+...+.+|+|||||+.|.+++ .++ .+|.+|++..++....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spDG~~L~v~~---~~d------~~i~~~~i~~~~~~~~ 74 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGV---RPE------FRVLAYRIAPDDGALT 74 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEE---TTT------TEEEEEEECTTTCCEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCCCCEEEEEE---CCC------CeEEEEEEeCCCCcEE
Confidence 446668999999999765433 3444 3556689999999999997633 344 5899999977665322
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC---------CceeE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS---------SHVPL 242 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s---------~d~tI 242 (464)
+.... .....|..++|+ |||++|+.++. +.+|++|+........... ...+.+++|+|+ .+..|
T Consensus 75 ~~~~~-~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i 152 (333)
T d1ri6a_ 75 FAAES-ALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI 152 (333)
T ss_dssp EEEEE-ECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred Eeeec-ccCCCceEEEEc-CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence 22222 123446689997 99999988875 7799999988776543322 456888999885 33578
Q ss_pred EEEEcCCCcEEEEEe------eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCc----EEEEc---c---cCCCc
Q 012410 243 KILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAE----LMEVS---R---TEFMT 305 (464)
Q Consensus 243 klWdi~tG~~l~tl~------~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~----~l~~l---~---gh~~~ 305 (464)
.+|+..++....... ........++|.+. +..+.. ....+...+|++.... ..... . .....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (333)
T d1ri6a_ 153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 231 (333)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred eEEEeccCCcceeeeceeeeeecCCCccEEEEecc-ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence 899987654433221 12234478999884 444444 3477888888865432 11221 1 22346
Q ss_pred eEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 306 PSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 306 v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+..++|+|||+.+.... ++++.+|++ ....+..+.++..... ..++++|||||++|+.++. .+++
T Consensus 232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~a~spDGk~l~va~~----------~~~~ 299 (333)
T d1ri6a_ 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQ----------KSHH 299 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECT----------TTCE
T ss_pred ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC--CeeEEEEeCCCCEEEEEEC----------CCCe
Confidence 77889999999766655 889999998 3333333333322100 1568999999998877653 3799
Q ss_pred EEEE--eCCCCeEEE
Q 012410 383 INVS--SILTGKCLA 395 (464)
Q Consensus 383 IklW--di~tG~cl~ 395 (464)
|+|| |.+||++-.
T Consensus 300 v~v~~id~~tG~l~~ 314 (333)
T d1ri6a_ 300 ISVYEIVGEQGLLHE 314 (333)
T ss_dssp EEEEEEETTTTEEEE
T ss_pred EEEEEEECCCCcEEE
Confidence 9999 667887643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=9.3e-21 Score=179.91 Aligned_cols=275 Identities=9% Similarity=0.025 Sum_probs=180.6
Q ss_pred EEEEeeCCCEEEEEEee-cCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe--------
Q 012410 134 SLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-------- 204 (464)
Q Consensus 134 Sv~fs~~g~~l~svSa~-~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-------- 204 (464)
-++.+|||..+.++..- .... .++.+||..+|++.++.+ . +....++|| |||+.|+.+
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~------~~v~v~D~~tg~~~~~~~---~---g~~~~~a~S-pDg~~l~v~~~~~~~~~ 72 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRVIGMID---G---GFLPNPVVA-DDGSFIAHASTVFSRIA 72 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEEEEEEE---E---CSSCEEEEC-TTSSCEEEEEEEEEETT
T ss_pred eEeeCCCCCEEEEEecccCCCc------CeEEEEECCCCcEEEEEE---C---CCCCceEEc-CCCCEEEEEeCCCcccc
Confidence 34678999998763210 1112 579999999998754332 1 233379998 999988754
Q ss_pred --cCCCcEEEEeCCCCeEEEEec--C-------CCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCc--
Q 012410 205 --AQDSIYKVFDLKNYTMLYSIS--D-------KHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLH-- 261 (464)
Q Consensus 205 --s~D~tiKlWdl~tg~~l~tl~--~-------~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~-- 261 (464)
+.|++|++||+++++.+.++. . .....++|+|+ .+..+.+|+.++|+.+.++.....
T Consensus 73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (355)
T d2bbkh_ 73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152 (355)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence 347899999999999988764 1 22456788774 456899999999999998874211
Q ss_pred -----ceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C
Q 012410 262 -----RNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 333 (464)
Q Consensus 262 -----~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G 333 (464)
+...+.|+++ +..+++. ..++++.+++..+.+ ..+...+...++++++..++.++ ++++.+|++. +
T Consensus 153 ~~~~~~~~~~~~~~d-g~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 153 IFPTAPDTFFMHCRD-GSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp EEEEETTEEEEEETT-SCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred EeecCCcceEEEcCC-CCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 1123344432 2222222 233444444433322 12334455667888888888888 9999999994 5
Q ss_pred ce--EEEeccCCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 334 EL--VTSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 334 e~--l~tl~gH~~------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
++ +.+..+|.. +.++ ....++++||+..++..+..... -.....+.+|.+||+.+++.++++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~t~~~~~~~~~~~---- 300 (355)
T d2bbkh_ 227 DAKFLPAVEALTEAERADGWRPG-GWQQVAYHRALDRIYLLVDQRDE-WRHKTASRFVVVLDAKTGERLAKFEMGH---- 300 (355)
T ss_dssp SCEECCCEESSCHHHHHTTEEEC-SSSCEEEETTTTEEEEEEEECCT-TCTTSCEEEEEEEETTTCCEEEEEEEEE----
T ss_pred cEEEEeccCCcccceEeeeeecc-ceEEEEEeCCCCeEEEEeccCCc-eeecCCCCeEEEEeCCCCcEEEEecCCC----
Confidence 53 334444432 1111 12458999999998876541111 1122235789999999999999986543
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC--EEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~--~LaSgs~DgtVrlWd~ 464 (464)
.+.+++|||||+ .+++++.|++|+|||.
T Consensus 301 -------------------------------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 301 -------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp -------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred -------------------------------CEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 678999999998 4578889999999983
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=2.9e-18 Score=166.97 Aligned_cols=275 Identities=6% Similarity=-0.085 Sum_probs=182.4
Q ss_pred eehhccCCe--EEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 101 VFALAHSGV--CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 101 l~~l~~~g~--~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
.+....+|. +.++|..+++.+..+..+... .++|+|||+.|++++.+.+.-.++-.-.++.+||..++++....+
T Consensus 37 ~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~---~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~ 113 (368)
T d1mdah_ 37 TLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113 (368)
T ss_dssp EECTTTCSSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred EeeccCCCcceEEEEeCCCCcEEEEEeCCCCC---cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec
Confidence 334556665 445588999999998664432 589999999999988765543333334789999999999865443
Q ss_pred ceeec---cccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecCCC---------EeEEEEeCCCceeEEEE
Q 012410 179 LFESE---SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKH---------VQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 179 l~~~~---~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~~~---------V~~Vafs~s~d~tIklW 245 (464)
+.... ....|..++|| |||++|+.+. .++++.+||+++++.+..+.... ..-+++ +.|+++.+|
T Consensus 114 ~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~Dg~~~~~ 190 (368)
T d1mdah_ 114 LPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG--SCPASLAAS 190 (368)
T ss_dssp ETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECC--CCTTSCEEE
T ss_pred CCccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEE--cCCCCEEEE
Confidence 32211 22456689998 8999998775 57999999999999988775211 111222 456778888
Q ss_pred EcCCCcEEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc--ccCC----------CceE
Q 012410 246 SIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEF----------MTPS 307 (464)
Q Consensus 246 di~tG~~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l--~gh~----------~~v~ 307 (464)
++.++....... .+......+.+.++ +. +....++.+.++|+..++..... ..+. ....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (368)
T d1mdah_ 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP--GM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCEEETTT--TE-EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred EecCCceeeeeeecccccccccceeecccccC--cE-EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce
Confidence 876554433221 11122244554332 33 33344566677776665544321 1111 1123
Q ss_pred EEEEcCCCcEEEEEe-C---------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE--EEEEecCCCccc
Q 012410 308 AFIFLYENQLFLTFR-N---------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKAEPEDQ 374 (464)
Q Consensus 308 sv~FspdgqllaS~s-D---------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~--LaSgs~~~~~~~ 374 (464)
.++++|++..+.... + .+|.+||. +|+++.++..+.. +.+++|||||+. +++++.
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~------~~~~a~spDG~~~ly~s~~~------ 335 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAG------ 335 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETT------
T ss_pred eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc------eeEEEECCCCCEEEEEEeCC------
Confidence 578899988766543 2 36999999 7999998875532 678999999983 455543
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|++|++||..|||++++|+-..
T Consensus 336 -----~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 336 -----TEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp -----TTEEEEEESSSCEEEEECCCCS
T ss_pred -----CCeEEEEECCCCCEEEEEECCC
Confidence 8999999999999999997654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=4.5e-18 Score=165.59 Aligned_cols=278 Identities=9% Similarity=0.036 Sum_probs=182.6
Q ss_pred ceEEEEEEeeCCCEEEE-EEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec---
Q 012410 130 EVIRSLFYNKNNDSLIT-VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--- 205 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~s-vSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs--- 205 (464)
...+.++..++|+.... +.++.... ..+.++|-.+|++.+... . +....++|+ |||+.|+.++
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~------~~~~~~d~~~~~~~~~~~---~---~~~~~~a~s-pDg~~i~~~~~~~ 86 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGT------TENWVSCAGCGVTLGHSL---G---AFLSLAVAG-HSGSDFALASTSF 86 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSS------EEEEEEETTTTEEEEEEE---E---CTTCEEEEC-TTSSCEEEEEEEE
T ss_pred CCccccccCCCCcceeEEeeccCCCc------ceEEEEeCCCCcEEEEEe---C---CCCCcceEC-CCCCEEEEEcccC
Confidence 33455667888887533 22222222 456677878888754222 1 222369997 9999988654
Q ss_pred -------CCCcEEEEeCCCCeEEEEec--C-------CCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 206 -------QDSIYKVFDLKNYTMLYSIS--D-------KHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 206 -------~D~tiKlWdl~tg~~l~tl~--~-------~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.|++|++||..+++++..+. . .....++|||+ .+++|.+||+++++++.++....
T Consensus 87 ~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~ 166 (368)
T d1mdah_ 87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS 166 (368)
T ss_dssp TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred ccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence 48899999999999998764 1 22457899885 46799999999999999887431
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE------EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCC-C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-G 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~------~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~-G 333 (464)
.. ...+......++.+.|+++..|++..+.... .+..+...+..+.+.++|..+.+.. +.+.+.+.. +
T Consensus 167 ~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~~~~~~~~ 241 (368)
T d1mdah_ 167 CF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAA 241 (368)
T ss_dssp CC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSS
T ss_pred cc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC-CCEEEEeecCC
Confidence 21 1122223455556789999999887665332 2334555666788999998876554 556677764 3
Q ss_pred ceEE--EeccCCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 334 ELVT--SFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 334 e~l~--tl~gH~~------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
+... ...++.. |.+. ....++++|++..+.-.... ++........+|.+||..||++++++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~v~~~~--~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~---- 314 (368)
T d1mdah_ 242 GATMKAAIDGNESGRKADNFRSA-GFQMVAKLKNTDGIMILTVE--HSRSCLAAAENTSSVTASVGQTSGPISNGH---- 314 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEEC-SSSCEEEETTTTEEEEEEEE--CSSCTTSCEEEEEEEESSSCCEEECCEEEE----
T ss_pred ceEEEeecccccceeeeeeecCC-CceeEEEcCCCCEEEEEecC--CCceeecCCceEEEEECCCCcEeEEecCCC----
Confidence 3221 2222221 1110 12358899999988765431 111222234679999999999999886442
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE--EEEeeCCCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~--LaSgs~DgtVrlWd 463 (464)
.+.+++|||||+. +++++.|++|++||
T Consensus 315 -------------------------------~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 315 -------------------------------DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp -------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred -------------------------------ceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 6789999999984 46888899999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=4.6e-16 Score=156.10 Aligned_cols=299 Identities=13% Similarity=0.064 Sum_probs=176.0
Q ss_pred ccCCeEEeeecccccEeeEeecC----CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce
Q 012410 105 AHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (464)
Q Consensus 105 ~~~g~~~~~~~~~g~~l~~ln~~----~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~ 180 (464)
..++.+.+||+.+|+....+... +...|.++.|||||+.|+.++.... -+.+..-..+.|||+++|++.. ...+
T Consensus 33 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~-~~r~s~~~~~~l~d~~~~~~~~-l~~~ 110 (470)
T d2bgra1 33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIYDLNKRQLIT-EERI 110 (470)
T ss_dssp ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEEETTTTEECC-SSCC
T ss_pred EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc-eeeeccCceEEEEECCCCcccc-cccC
Confidence 45678899999999987766432 2356899999999999999764321 1222333688999999988632 1212
Q ss_pred eeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--------------------CCEeEEEEeCC---
Q 012410 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------------------KHVQEIKIRSS--- 237 (464)
Q Consensus 181 ~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--------------------~~V~~Vafs~s--- 237 (464)
. .....++|| |||+.||+. .|..+.+|++.+|+....... .....+.|||+
T Consensus 111 ~----~~~~~~~~S-PDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ 184 (470)
T d2bgra1 111 P----NNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF 184 (470)
T ss_dssp C----TTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred C----ccccccccc-cCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc
Confidence 1 334489998 999999995 567899999999887643210 01122334331
Q ss_pred -----------------------------------------CceeEEEEEcCCCcEEEEEee-----------CCcceee
Q 012410 238 -----------------------------------------SHVPLKILSIEDGTVLKVFYH-----------LLHRNKK 265 (464)
Q Consensus 238 -----------------------------------------~d~tIklWdi~tG~~l~tl~~-----------~~~~~~~ 265 (464)
.+.++.+|++++++....... ....+..
T Consensus 185 ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
T d2bgra1 185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (470)
T ss_dssp EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred cceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEE
Confidence 334677888877765433221 0112245
Q ss_pred EEEEccCCCeEEE-E-eCC---CeEEE--EECCCCcEEEEccc-------------CCCceEEEEEcCCCcEEEEEe-CC
Q 012410 266 VDFIEQFNEKLLV-K-QEN---ENLQI--LDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 266 V~F~~~~~~~lla-~-s~D---~tIkI--WDv~tg~~l~~l~g-------------h~~~v~sv~FspdgqllaS~s-D~ 324 (464)
+.|.+. +.++. . ... ..+++ +|..+|+...+... |......+.+.+++.++..+. |+
T Consensus 265 ~~w~~~--~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg 342 (470)
T d2bgra1 265 VTWATQ--ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (470)
T ss_dssp EEEEET--TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEEcCC--CceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCc
Confidence 777664 44444 2 222 23344 46677776554321 222222222333444455555 88
Q ss_pred eEEEE--eCCCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCe--------EEEEeCCCCeE
Q 012410 325 TVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGS--------INVSSILTGKC 393 (464)
Q Consensus 325 TIklW--d~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~Dgt--------IklWdi~tG~c 393 (464)
...|| +..|.....+..+.-. |..+ +++|++.| ++++. .+.+ |++|+....+|
T Consensus 343 ~~~ly~~~~~g~~~~~lt~g~~~-----v~~~-~~~d~~~iyf~a~~----------~~~~p~~~~ly~v~~~g~~~~~~ 406 (470)
T d2bgra1 343 YRHICYFQIDKKDCTFITKGTWE-----VIGI-EALTSDYLYYISNE----------YKGMPGGRNLYKIQLSDYTKVTC 406 (470)
T ss_dssp CEEEEEEETTCSCCEESCCSSSC-----EEEE-EEECSSEEEEEESC----------GGGCTTCBEEEEEETTCTTCEEE
T ss_pred CceeEEEeccCCceeeeccCCee-----EEEE-EEECCCEEEEEEec----------CCCCcceEEEEEEECCCCCceeE
Confidence 76666 4567777777655433 6666 45555655 33322 0222 44444444455
Q ss_pred EE-EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE---EeeCCCcEEecc
Q 012410 394 LA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY---TGNRHGLVHVWS 463 (464)
Q Consensus 394 l~-tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La---Sgs~DgtVrlWd 463 (464)
|. ++.+|.. .+.+++|||||++++ ||..+-.++||+
T Consensus 407 lt~~~~~~~~----------------------------------~~~s~~fSpdgky~~~~~s~~~~P~~~l~~ 446 (470)
T d2bgra1 407 LSCELNPERC----------------------------------QYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (470)
T ss_dssp SSTTTSTTTB----------------------------------CBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred ecccccCCCC----------------------------------CEEEEEECCCCCEEEEEecCCCCCeEEEEE
Confidence 53 2345554 789999999999877 666665677764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.65 E-value=2.4e-16 Score=163.09 Aligned_cols=278 Identities=11% Similarity=0.046 Sum_probs=185.8
Q ss_pred ehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 102 ~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
.+..++|.+.+|++.+++.|..+- .|||++.. .++.++ .+-++.. .+... ...
T Consensus 15 ~Sgg~sG~V~V~dlpS~r~l~~Ip----------Vfspd~~~-----g~g~~~------es~~vl~--~~~~~----~~g 67 (441)
T d1qnia2 15 WSGGHQGEVRVLGVPSMRELMRIP----------VFNVDSAT-----GWGITN------ESKEILG--GDQQY----LNG 67 (441)
T ss_dssp EECBTTCCEEEEEETTTEEEEEEC----------SSSBCTTT-----CTTTSH------HHHHHHC--SSSCC----SCC
T ss_pred EeCCCCCcEEEEeCCCCcEEEEEE----------eEcCCCCE-----EEEECC------ccceEEe--ccccc----ccC
Confidence 455689999999999999999882 27888864 234443 2222211 11110 011
Q ss_pred eccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeCCCc------------------
Q 012410 182 SESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSSSH------------------ 239 (464)
Q Consensus 182 ~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s~d------------------ 239 (464)
..+..|..++.++ |||++| +....+.+|.++|+.++++...+. ......++|+|+..
T Consensus 68 d~hhP~~s~t~gt-pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 68 DCHHPHISMTDGR-YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp CBCCCEEEEETTE-EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred cccCCCcceeccc-CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence 1111222245566 899998 666789999999999999987654 56799999987311
Q ss_pred ---------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC-----------------------------
Q 012410 240 ---------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----------------------------- 281 (464)
Q Consensus 240 ---------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~----------------------------- 281 (464)
..+..+|.++.+.+.++.-. .....++|+|+ +..+.+++.
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spd-Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~ 224 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYT-GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred cccccccccceEEeecCccceeeEEEecC-CCccceEECCC-CCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence 23466899999998877632 34578899884 555555542
Q ss_pred ------------CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEE-Ee-CCeEEEEeCCCceEEEeccCCCCcC
Q 012410 282 ------------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 282 ------------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS-~s-D~TIklWd~~Ge~l~tl~gH~~~~~ 347 (464)
++.+.|++..+.+.+.++..+ ..|..+++||||+++.. +. |+||.|||++ ++...|+++..+ .
T Consensus 225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~-k~~~~~~~~~~~-~ 301 (441)
T d1qnia2 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID-KLDDLFEDKIEL-R 301 (441)
T ss_dssp HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG-GHHHHTTTSSCG-G
T ss_pred EecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee-hhhhHhhccCCc-c
Confidence 356677776766777776665 45889999999997655 55 9999999973 122233444332 1
Q ss_pred CC---------CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----------CeEEEEE-----ccCCCC
Q 012410 348 DC---------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKI-----NATNCS 403 (464)
Q Consensus 348 ~~---------~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t----------G~cl~tl-----~gh~~~ 403 (464)
+| ...-.+|.++|..+.|..- |.+|..|++.. ..-+.++ .||..
T Consensus 302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~-----------ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~- 369 (441)
T d1qnia2 302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFI-----------DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH- 369 (441)
T ss_dssp GGEEECCBCCSCEEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE-
T ss_pred eEEEeecccccCcccceecCCceEEEcccc-----------cceEEEeccchhhhhhccCCCceeEeccccccCCCCCc-
Confidence 11 1233589999999988775 99999999742 1234455 34543
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe---eCCC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---NRHG 457 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg---s~Dg 457 (464)
.+.+.+|+|||++|+|+ |.|+
T Consensus 370 ---------------------------------~~~~~t~~pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 370 ---------------------------------ASLTESRDADGKWLVVLSKFSKDR 393 (441)
T ss_dssp ---------------------------------ETTTTSTTCCCCEEEEEESCCGGG
T ss_pred ---------------------------------cccccccCCCCcEEEecCcccccc
Confidence 56678899999999999 5554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.54 E-value=1.4e-14 Score=145.20 Aligned_cols=164 Identities=7% Similarity=-0.026 Sum_probs=117.9
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-----CCCceEEEEEcCCCcEEEEEe----------CCeEE
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-----EFMTPSAFIFLYENQLFLTFR----------NRTVA 327 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-----h~~~v~sv~FspdgqllaS~s----------D~TIk 327 (464)
..++.|+++ +.++. ..|++|.+||+.+|+....+.. |...+.++.|||||+.||.++ ++.+.
T Consensus 19 ~~~~~W~~d--~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 19 LYSLRWISD--HEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCCEECSS--SEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccCCEeCCC--CEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 356777774 45554 4578999999999998775544 456799999999999999875 46788
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcc
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 407 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~ 407 (464)
|||+.+..+..+.+|... +..+.|||||+.||..+ ++.+.+|++.+|+.++....+.. . .
T Consensus 96 l~d~~~~~~~~l~~~~~~-----~~~~~~SPDG~~ia~~~------------~~~l~~~~~~~g~~~~~t~~~~~--~-~ 155 (470)
T d2bgra1 96 IYDLNKRQLITEERIPNN-----TQWVTWSPVGHKLAYVW------------NNDIYVKIEPNLPSYRITWTGKE--D-I 155 (470)
T ss_dssp EEETTTTEECCSSCCCTT-----EEEEEECSSTTCEEEEE------------TTEEEEESSTTSCCEECCSCCBT--T-T
T ss_pred EEECCCCcccccccCCcc-----ccccccccCcceeeEee------------cccceEEECCCCceeeeeeccCC--C-c
Confidence 999965556789999887 88999999999999875 78999999999998776544332 0 0
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc-EEec
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL-VHVW 462 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt-VrlW 462 (464)
.. +-..-|.-..+......++.|||||+.||....|.+ |+.|
T Consensus 156 ~~-------------~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 156 IY-------------NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp EE-------------ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred cc-------------ccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence 00 000000001122235566889999999999987766 5544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=1.4e-11 Score=116.56 Aligned_cols=224 Identities=10% Similarity=0.228 Sum_probs=166.4
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--------CCEeEEEEeCC----------CceeEEEEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIRSS----------SHVPLKILS 246 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--------~~V~~Vafs~s----------~d~tIklWd 246 (464)
+.+|..|+++ |||+++++-...+.|++||. +|+++..+.. ..-..+++.++ ....|..++
T Consensus 22 f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (279)
T d1q7fa_ 22 FTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 99 (279)
T ss_dssp BSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence 5678899997 89999998888899999995 5888877741 12344555332 334566666
Q ss_pred cCCCcEEEEEee-CCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe
Q 012410 247 IEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 247 i~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s 322 (464)
. +|+...++.. ....-..+++.+. +.+++. ...+.+.++| .+|+.+..+ ..+...+..+++.++|+++++..
T Consensus 100 ~-~g~~~~~~~~~~~~~p~~~avd~~--G~i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 100 Q-YGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp T-TSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred c-cccceeecCCCcccccceeccccC--CcEEEEeeccceeeEec-cCCceeecccccccccccceeeeccceeEEeeec
Confidence 5 5888877752 2233466776552 555554 5777888888 678887764 45677899999999999999988
Q ss_pred -CCeEEEEeCCCceEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 -NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 -D~TIklWd~~Ge~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.++|+++|.+|+.+.++. ++... -..|++.|+|+++++-+. +.+.|.+++ .+|+.+.++..
T Consensus 176 ~~~~V~~~d~~G~~~~~~g~~g~~~~-----P~giavD~~G~i~Vad~~----------~~~~v~~f~-~~G~~~~~~~~ 239 (279)
T d1q7fa_ 176 RAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH----------NNFNLTIFT-QDGQLISALES 239 (279)
T ss_dssp GGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS----------SSCEEEEEC-TTSCEEEEEEE
T ss_pred cccceeeeecCCceeeeecccccccC-----CcccccccCCeEEEEECC----------CCcEEEEEC-CCCCEEEEEeC
Confidence 999999999999999984 34433 578999999999987542 256899999 68999999865
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
... ....+.||++|||+.++ ++.++.|++|.
T Consensus 240 ~~~--------------------------------~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 240 KVK--------------------------------HAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp SSC--------------------------------CSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred CCC--------------------------------CCCEeEEEEeCCCcEEE-EeCCCeEEEEE
Confidence 432 01568899999998555 56789999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.32 E-value=4.1e-11 Score=123.36 Aligned_cols=222 Identities=10% Similarity=0.005 Sum_probs=151.2
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEecC----C----------------------------CEeEEEEeC---------CCc
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSISD----K----------------------------HVQEIKIRS---------SSH 239 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~~----~----------------------------~V~~Vafs~---------s~d 239 (464)
.+||+++++|+|||+.+++.++++.- . ......++| ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 34788999999999999999998741 0 011122233 356
Q ss_pred eeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCe-EEE-EeCCC-----------------eEEEEECCCCcEEEEc
Q 012410 240 VPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEK-LLV-KQENE-----------------NLQILDVRNAELMEVS 299 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~-lla-~s~D~-----------------tIkIWDv~tg~~l~~l 299 (464)
..|.++|++|+++.++++ -.......++|+|+ +.+ .++ .+++. .+..+|..+.+.....
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spd-g~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV-PKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEecc-CCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 789999999999999886 23356688999985 432 333 34432 3456899998877655
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe-C-----------------------------------------CeEEEEeC-CCceE
Q 012410 300 RTEFMTPSAFIFLYENQLFLTFR-N-----------------------------------------RTVAVWNF-RGELV 336 (464)
Q Consensus 300 ~gh~~~v~sv~FspdgqllaS~s-D-----------------------------------------~TIklWd~-~Ge~l 336 (464)
... ..+..++|+|||+.+.+++ + +++.|++. ..+++
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 433 2478899999999888776 4 35666766 46678
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
.++..+... ..+++||||++++.++. .|+||.+||+.+-+ ..|.++-.......+
T Consensus 252 ~~IPvgksP------hGv~vSPDGkyl~~~~~----------~~~tvsv~d~~k~~--~~~~~~~~~~~~~~~------- 306 (441)
T d1qnia2 252 RYIPVPKNP------HGLNTSPDGKYFIANGK----------LSPTVSVIAIDKLD--DLFEDKIELRDTIVA------- 306 (441)
T ss_dssp EEECCBSSC------CCEEECTTSCEEEEECT----------TSSBEEEEEGGGHH--HHTTTSSCGGGGEEE-------
T ss_pred EEEeCCCCc------cCceECCCCCEEEEeCC----------cCCcEEEEEeehhh--hHhhccCCcceEEEe-------
Confidence 888777665 36899999998866543 39999999986533 233333320000000
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
...-.| ...-.+|+++|+.+.|..-|..|..|+
T Consensus 307 -------------~~~~gl-gplh~~fd~~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 307 -------------EPELGL-GPLHTTFDGRGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp -------------CCBCCS-CEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred -------------eccccc-CcccceecCCceEEEcccccceEEEec
Confidence 000111 334469999999999999999999997
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=2.2e-09 Score=100.17 Aligned_cols=229 Identities=10% Similarity=0.078 Sum_probs=139.3
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEE
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKl 212 (464)
.+|++.++|...++ ..+... +.. .+..+.... ..+...-...|..|+|+ ++|.+.++....+.+++
T Consensus 17 ~~vavd~dG~i~v~--~~~~~~------~i~---~~~~~~~~~--~~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 17 SGVAVDSAGNVYVT--SEGMYG------RVV---KLATGSTGT--TVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp EEEEECTTCCEEEE--ECSSSC------EEE---EEC----CE--EECCCCSCCSCCCEEEC-TTCCEEEEETTTEEEEE
T ss_pred CEEEEcCCCCEEEE--EcCCCC------EEE---EEcCCCceE--EEeccCCccCceEEEEc-CCCCEEEeeeeeceeee
Confidence 68999999997766 223333 222 233333211 12222234567799997 89999998888888887
Q ss_pred EeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEEC
Q 012410 213 FDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDV 290 (464)
Q Consensus 213 Wdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv 290 (464)
++-.++..+.... ......|++.++ +.+.+. ..+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~iavd~~------------------------------------g~i~v~d~~~~~~~~~~~ 126 (260)
T d1rwia_ 83 AAGSNNQTVLPFDGLNYPEGLAVDTQ------------------------------------GAVYVADRGNNRVVKLAA 126 (260)
T ss_dssp CTTCSCCEECCCCSCCSEEEEEECTT------------------------------------CCEEEEEGGGTEEEEECT
T ss_pred eeeccceeeeeeeeeeeccccccccc------------------------------------ceeEeecccccccccccc
Confidence 7655544332222 123344444332 233332 23344445554
Q ss_pred CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 291 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 291 ~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..........+-...+.++++.|+|+++++.. +..|..+|.+|..+.++. ..... -+.|+|.|+|+++++...
T Consensus 127 ~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 127 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp TCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT
T ss_pred ccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCC-----CccceeeeeeeeeeeecC
Confidence 33333222223345788999999999999888 889999999877666665 33333 578999999999988754
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
.+.|..++...+.+ ..+ .-. .+....+|++++||+
T Consensus 202 -----------~~~i~~~~~~~~~~-~~~-~~~--------------------------------~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 202 -----------TNQVVKLLAGSTTS-TVL-PFT--------------------------------GLNTPLAVAVDSDRT 236 (260)
T ss_dssp -----------TTEEEEECTTCSCC-EEC-CCC--------------------------------SCCCEEEEEECTTCC
T ss_pred -----------CCEEEEEeCCCCeE-EEE-ccC--------------------------------CCCCeEEEEEeCCCC
Confidence 67777776533322 221 111 112568899999999
Q ss_pred EEEEeeCCCcEEe
Q 012410 449 EIYTGNRHGLVHV 461 (464)
Q Consensus 449 ~LaSgs~DgtVrl 461 (464)
.+++-..++.|+-
T Consensus 237 l~vad~~~~rI~~ 249 (260)
T d1rwia_ 237 VYVADRGNDRVVK 249 (260)
T ss_dssp EEEEEGGGTEEEE
T ss_pred EEEEECCCCEEEE
Confidence 8888777777753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.23 E-value=4.7e-09 Score=98.83 Aligned_cols=229 Identities=11% Similarity=0.210 Sum_probs=157.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce--eeccccCceEEEEeCCCCcEEE-EecCCC
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF--ESESLKWPGFVEFDDVNGKVLT-YSAQDS 208 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~--~~~~~~~~~~VaFs~pdGk~La-Sgs~D~ 208 (464)
-+.|+++|+|+++++ + ..+ +.|++++ ..|++...+... .......|..+++.+..|..++ ..+.+.
T Consensus 25 P~gvavd~dg~i~Va---D-~~n------~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVA---D-TNN------HRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 93 (279)
T ss_dssp EEEEEECTTCCEEEE---E-GGG------TEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred ccEEEEcCCCCEEEE---E-CCC------CEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCcc
Confidence 578999999997655 2 233 5777777 556654322111 1112345667887644454444 445667
Q ss_pred cEEEEeCCCCeEEEEec---CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS---DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~ 275 (464)
.|++++. +|+...++. ......+++.++ ....+.+++. +|+.+.++.. +......+++.+. +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~--g~ 169 (279)
T d1q7fa_ 94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK--QE 169 (279)
T ss_dssp EEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS--SE
T ss_pred ccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc--ee
Confidence 8888885 677777765 245678888653 2234555554 5788887742 2234467777553 56
Q ss_pred EEEE-eCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCCCC
Q 012410 276 LLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 276 lla~-s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~~~ 350 (464)
++++ ...+.|+++| .+|+.+.++ .++...|..+++.|+|+++++-+ ++.|.+++.+|+++.++....... .
T Consensus 170 i~v~d~~~~~V~~~d-~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~---~ 245 (279)
T d1q7fa_ 170 IFISDNRAHCVKVFN-YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA---Q 245 (279)
T ss_dssp EEEEEGGGTEEEEEE-TTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS---C
T ss_pred EEeeeccccceeeee-cCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCC---C
Confidence 6664 5889999999 678888776 35677899999999999999865 568999999999999987654321 1
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
-+.|++.|||+++++. . +.+|++|..++.
T Consensus 246 p~~vav~~dG~l~V~~-~-----------n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 246 CFDVALMDDGSVVLAS-K-----------DYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEEETTTEEEEEE-T-----------TTEEEEEECSCC
T ss_pred EeEEEEeCCCcEEEEe-C-----------CCeEEEEEeeee
Confidence 5789999999987753 3 889999987654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=5.3e-09 Score=95.22 Aligned_cols=224 Identities=10% Similarity=0.127 Sum_probs=125.3
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeC
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD 195 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~ 195 (464)
.+|.....+.. +.+.+.+-.|||||+.||-++..... ..+.+.+...+... ..+ ..........||
T Consensus 26 ~dG~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~-------~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~s- 91 (269)
T d2hqsa1 26 YDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGR-------SALVIQTLANGAVR----QVA-SFPRHNGAPAFS- 91 (269)
T ss_dssp TTSCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSS-------CEEEEEETTTCCEE----EEE-CCSSCEEEEEEC-
T ss_pred CCCCCcEEEec-CCCceeeeEECCCCCEEEEEEeeccC-------cceeeeecccCcee----EEe-eeecccccceec-
Confidence 46777777754 45568999999999999986632222 24444444444421 122 123445578897
Q ss_pred CCCcEEEEecCCC-cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 196 VNGKVLTYSAQDS-IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 196 pdGk~LaSgs~D~-tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
|||+.|+..+.+. ...++.. ....++......+. .......+++ +++
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 139 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVM------------------------------DLASGQIRQVTDGR-SNNTEPTWFP-DSQ 139 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEE------------------------------ETTTCCEEECCCCS-SCEEEEEECT-TSS
T ss_pred CCCCeeeEeeecCCccceeec------------------------------ccccccceeeeecc-cccccccccc-ccc
Confidence 8999998765432 1111111 01111111111110 1112223333 234
Q ss_pred eEEEE-eCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEe--CCCceEEEeccCCCCcC
Q 012410 275 KLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWN--FRGELVTSFEDHLLWHP 347 (464)
Q Consensus 275 ~lla~-s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd--~~Ge~l~tl~gH~~~~~ 347 (464)
.++.. ..++ .|.+.++.+++..+.. .+........++|||+.++..+ ++...+|. ..+...+.+. +...
T Consensus 140 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-- 215 (269)
T d2hqsa1 140 NLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STFL-- 215 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSSS--
T ss_pred cceecccccCCceEeeeecccccceeee-cccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cCcc--
Confidence 44443 3444 5666676666544443 3445566778999999999887 55555554 4444444443 3333
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
.....|||||+.||-.+. .+....|.++++..++ ...|....
T Consensus 216 ---~~~p~~SPDG~~i~f~s~--------~~~~~~l~~~~~dg~~-~~~lt~~~ 257 (269)
T d2hqsa1 216 ---DETPSLAPNGTMVIYSSS--------QGMGSVLNLVSTDGRF-KARLPATD 257 (269)
T ss_dssp ---CEEEEECTTSSEEEEEEE--------ETTEEEEEEEETTSCC-EEECCCSS
T ss_pred ---ccceEECCCCCEEEEEEc--------CCCCcEEEEEECCCCC-EEEEeCCC
Confidence 567899999999986654 2235689999986655 45564444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=8.9e-09 Score=101.15 Aligned_cols=286 Identities=10% Similarity=0.000 Sum_probs=146.8
Q ss_pred EeeecccccE--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceeeccccC
Q 012410 111 AAFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFESESLKW 187 (464)
Q Consensus 111 ~~~~~~~g~~--l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~~~~~~ 187 (464)
-.||.++++. +..........+.-|+|+|+|+.|.+++ .+ .+..+.+. .+... ..-....-+.
T Consensus 19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~----~~-------~~~~~~i~~~~~~~---~~~~~~~~~~ 84 (365)
T d1jofa_ 19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTEIV---HEASHPIGGH 84 (365)
T ss_dssp EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTEEE---EEEEEECCSS
T ss_pred EEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe----CC-------cEEEEEEeCCCCeE---EEeeecCCCC
Confidence 3555556553 2233233344445599999999998854 12 33444442 22221 0111112245
Q ss_pred ceEEEEeCCCCcE--EEEecC-CCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 188 PGFVEFDDVNGKV--LTYSAQ-DSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 188 ~~~VaFs~pdGk~--LaSgs~-D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
|..|+|+ |||+. |+++.. .++|-.+.+. .+..... |+-..+ .++. +.....-.....+.
T Consensus 85 p~~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~----------~~~~~~--~~~~----~~~~~~~~q~~~h~ 147 (365)
T d1jofa_ 85 PRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV----------FSVSET--GKLE----KNVQNYEYQENTGI 147 (365)
T ss_dssp GGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEE----------EEECTT--CCEE----EEEEEEECCTTCCE
T ss_pred cEEEEEC-CCCCEEEEEEecCCCCEEEEeEccCCCCccee----------Eeeeec--ceec----CcccCcccCCCCcc
Confidence 6678996 89984 444332 3444443322 1111111 110000 0110 11111111122346
Q ss_pred eeEEEEccCCCeEEEEe-CCCeEEEEECC-CCcEEEE----cccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-Cc
Q 012410 264 KKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEV----SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GE 334 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s-~D~tIkIWDv~-tg~~l~~----l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-Ge 334 (464)
..|+|+| ++.++++.. ....|.++++. +|..... .......|+.++|+|||+++-... +++|.+|+.+ ++
T Consensus 148 h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 148 HGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 7899999 466677765 44577777654 4554322 223346899999999999875554 9999999983 33
Q ss_pred --eEEEeccCCCCc------------CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEc-
Q 012410 335 --LVTSFEDHLLWH------------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN- 398 (464)
Q Consensus 335 --~l~tl~gH~~~~------------~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~- 398 (464)
.+.+........ ..-....++|+|||++|+.+...+. ......|-.+++.. |.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~-----~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK-----FELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS-----TTSCCEEEEEEECTTSCEEEEEEE
T ss_pred ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC-----CccceEEEEEEecCCCceeeEeEe
Confidence 232222111000 0001346899999999988754110 01133466666533 33222111
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEe-eCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTG-NRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSg-s~DgtVrlWd 463 (464)
.+.. ..| ..-+.++|+| ||+.|+.+ ..+++|.+|+
T Consensus 302 ~~~~--------~~G----------------------~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 302 SPTP--------TSG----------------------GHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EECS--------SCC----------------------TTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred eEEE--------cCC----------------------CCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence 1110 000 1345689998 89977666 5779999985
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=5e-08 Score=92.49 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=140.7
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
..|.+..+- ...++.++++.|||.++++ ...+ ++|..++ +.|+.. .++. .-+.|..++|+ |
T Consensus 17 ~~~v~~~~p--~~~~~e~iAv~pdG~l~vt----~~~~------~~I~~i~-p~g~~~---~~~~--~~~~~~gla~~-~ 77 (302)
T d2p4oa1 17 PAKIITSFP--VNTFLENLASAPDGTIFVT----NHEV------GEIVSIT-PDGNQQ---IHAT--VEGKVSGLAFT-S 77 (302)
T ss_dssp CEEEEEEEC--TTCCEEEEEECTTSCEEEE----ETTT------TEEEEEC-TTCCEE---EEEE--CSSEEEEEEEC-T
T ss_pred cccEEEECC--CCCCcCCEEECCCCCEEEE----eCCC------CEEEEEe-CCCCEE---EEEc--CCCCcceEEEc-C
Confidence 344455552 2347999999999998877 3333 4554444 445431 2223 33677799997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
||++++++..++.+.+|++.+..- .+.. +-+...+ .....+++.+. +.+
T Consensus 78 dG~l~v~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~~~~----------~~~n~i~~~~~--g~~ 126 (302)
T d2p4oa1 78 NGDLVATGWNADSIPVVSLVKSDG-------TVET------------LLTLPDA----------IFLNGITPLSD--TQY 126 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTS-------CEEE------------EEECTTC----------SCEEEEEESSS--SEE
T ss_pred CCCeEEEecCCceEEEEEeccccc-------ceee------------ccccCCc----------cccceeEEccC--CCE
Confidence 999999888888887777543211 1111 1111111 12234444442 455
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcc----------cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--Cce--EEEec
Q 012410 277 LVK-QENENLQILDVRNAELMEVSR----------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL--VTSFE 340 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~----------gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~--l~tl~ 340 (464)
+++ +.++.|..+|..++.....+. +....+..+.+.. +.++.+.+ ++.|..++.. +.. ...+.
T Consensus 127 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (302)
T d2p4oa1 127 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV 205 (302)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE
T ss_pred EeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc
Confidence 554 466777777777765432221 1123455666654 34555556 8888888873 222 12222
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+... ...++|.+||.+.++... +++|..++. .|+-.........
T Consensus 206 ~~~~------pdgia~d~dG~l~va~~~-----------~~~V~~i~p-~G~~~~~~~~~~~------------------ 249 (302)
T d2p4oa1 206 EQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTIIAQAEQG------------------ 249 (302)
T ss_dssp ESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEEECGGGT------------------
T ss_pred CCCC------CcceEECCCCCEEEEEcC-----------CCcEEEECC-CCCEEEEEecCCC------------------
Confidence 2222 247999999998887654 788999885 5664443322211
Q ss_pred ccccccccccccccccCEEEEEE---cCCCCEEEEeeCC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFY---DEERNEIYTGNRH 456 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slaf---spDg~~LaSgs~D 456 (464)
+...++|+| +||+++||-++..
T Consensus 250 --------------~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 250 --------------VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --------------CCCceEEEEcCCCCCCCEEEEECCC
Confidence 127899999 8899999866544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.89 E-value=4.7e-08 Score=95.85 Aligned_cols=160 Identities=8% Similarity=0.036 Sum_probs=94.7
Q ss_pred cCceEEEEeCCCCcEEEEecC-CCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
.|+-.|+|+ |||++|..++. ...|.+|+.. +|..... ..+... ..| ..-
T Consensus 145 ~h~h~v~~s-PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~------~~~~~~------------~~g----------~gP 195 (365)
T d1jofa_ 145 TGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELV------GSVDAP------------DPG----------DHP 195 (365)
T ss_dssp CCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEE------EEEECS------------STT----------CCE
T ss_pred CcceEEEEC-CCCCEEEEeeCCCCEEEEEEccCCCceeec------cceeec------------CCC----------Cce
Confidence 467799997 99998776653 3356666543 3332211 000000 001 223
Q ss_pred eeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEE--EEc-----------------ccCCCceEEEEEcCCCcEEEEEe-
Q 012410 264 KKVDFIEQFNEKLLV-KQENENLQILDVRNAELM--EVS-----------------RTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 264 ~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l--~~l-----------------~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+.++|+|+ +..+.+ ...+++|.+||+..++.. ... ..+...+..++|+|||+.|.++.
T Consensus 196 r~i~f~pd-g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 196 RWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEECCC-CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 56777773 444434 347788888887665422 111 12233567889999999887764
Q ss_pred -CCe-----EEEEeC--CCceEEEec-----cCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 323 -NRT-----VAVWNF--RGELVTSFE-----DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 323 -D~T-----IklWd~--~Ge~l~tl~-----gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+.+ |..+++ .|.+..... ....+ -+.++|+| ||++|+.+.. .+++|.+|++
T Consensus 275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-----p~~i~~~p~~G~~l~va~~----------~s~~v~v~~~ 339 (365)
T d1jofa_ 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-----SNAVSPCPWSDEWMAITDD----------QEGWLEIYRW 339 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-----CCCEEECTTCTTEEEEECS----------SSCEEEEEEE
T ss_pred cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-----ccEEEecCCCCCEEEEEeC----------CCCeEEEEEE
Confidence 444 777776 365543222 11223 35799998 8998877754 3899999987
Q ss_pred CC
Q 012410 389 LT 390 (464)
Q Consensus 389 ~t 390 (464)
..
T Consensus 340 ~~ 341 (365)
T d1jofa_ 340 KD 341 (365)
T ss_dssp ET
T ss_pred eC
Confidence 43
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=8.9e-07 Score=80.03 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=104.4
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
.+..+-+|| |||+.||..+.+... .. +-+.+.+++.... +.........
T Consensus 39 ~~~~sP~wS-PDGk~IAf~~~~~~~--------~~---------------------~~~~~~~~~~~~~-~~~~~~~~~~ 87 (269)
T d2hqsa1 39 QPLMSPAWS-PDGSKLAYVTFESGR--------SA---------------------LVIQTLANGAVRQ-VASFPRHNGA 87 (269)
T ss_dssp SCEEEEEEC-TTSSEEEEEECTTSS--------CE---------------------EEEEETTTCCEEE-EECCSSCEEE
T ss_pred CceeeeEEC-CCCCEEEEEEeeccC--------cc---------------------eeeeecccCceeE-Eeeeeccccc
Confidence 444478998 999999987543311 01 1111222232221 1211244455
Q ss_pred EEEEccCCCeEEEEe-CCCeEE--EEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEE--eCCCceEEE
Q 012410 266 VDFIEQFNEKLLVKQ-ENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTS 338 (464)
Q Consensus 266 V~F~~~~~~~lla~s-~D~tIk--IWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklW--d~~Ge~l~t 338 (464)
..|+| ++.+++..+ .++... .+.....+......+. .......++++++.++-.+ ++...|| +..+.....
T Consensus 88 ~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 165 (269)
T d2hqsa1 88 PAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR 165 (269)
T ss_dssp EEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE
T ss_pred ceecC-CCCeeeEeeecCCccceeecccccccceeeeecc-ccccccccccccccceecccccCCceEeeeeccccccee
Confidence 66666 344555433 333333 3333333444433333 3344455777777655544 6654444 554444444
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+..+... .....+||||+.|+..+.. +..-.|.+.|..++.+ ..+ .+..
T Consensus 166 ~~~~~~~-----~~~~~~spdg~~~~~~~~~--------~~~~~i~~~~~~~~~~-~~~-~~~~---------------- 214 (269)
T d2hqsa1 166 ITWEGSQ-----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVL-SSTF---------------- 214 (269)
T ss_dssp CCCSSSE-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEETTTCCE-EEC-CCSS----------------
T ss_pred eeccccc-----ccccccccccceeEEEeec--------CCceeeeEeecccccc-eEe-ecCc----------------
Confidence 4444433 5678899999999988751 1234555666655554 222 2222
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCC---CcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH---GLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D---gtVrlWd 463 (464)
.+....|||||+.||-.+.. ..+.+|+
T Consensus 215 ------------------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 215 ------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp ------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ------------------cccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 45678999999999755433 3455554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=1.5e-06 Score=83.51 Aligned_cols=223 Identities=13% Similarity=0.149 Sum_probs=143.1
Q ss_pred cccCceEEEEeCCCCcEEEEecC-------CCcEEEEeCCCCeEEEEec------CCCEeEEEEeCCCc--------eeE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS------DKHVQEIKIRSSSH--------VPL 242 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~-------D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs~s~d--------~tI 242 (464)
-+..+...+|+ |||.++.+... +++|..||.++++...... ...-..++|.++.. ..|
T Consensus 16 ~~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred CCCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence 34556789996 89998876433 4678889999887654332 12345788876532 346
Q ss_pred EEEEcCCCcEEEEEeeC-----CcceeeEEEEccCCCeEEEEe-C---------------CCeEEEEECCCCcEEEEccc
Q 012410 243 KILSIEDGTVLKVFYHL-----LHRNKKVDFIEQFNEKLLVKQ-E---------------NENLQILDVRNAELMEVSRT 301 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~-----~~~~~~V~F~~~~~~~lla~s-~---------------D~tIkIWDv~tg~~l~~l~g 301 (464)
...+.+ |.....+... ......++|.++ +.+.++. . ++.|..++ ..|+..+.. .
T Consensus 95 ~~~~~~-g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~-~dg~~~~~~-~ 169 (314)
T d1pjxa_ 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFT-TDGQMIQVD-T 169 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC-TTSCEEEEE-E
T ss_pred EEEeCC-CcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEe-ecCceeEee-C
Confidence 667765 4333333211 112356888774 5555542 1 22343344 246655443 3
Q ss_pred CCCceEEEEEcCCCc-----EEEEEe-CCeEEEEeC--CCceEE-----EeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 302 EFMTPSAFIFLYENQ-----LFLTFR-NRTVAVWNF--RGELVT-----SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 302 h~~~v~sv~Fspdgq-----llaS~s-D~TIklWd~--~Ge~l~-----tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+...+..++|+|++. ++++-+ .+.|..+|+ .|.+.. .+.+..... -..+++.++|++.++...
T Consensus 170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~----pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG----ADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE----EEEEEEBTTCCEEEEEET
T ss_pred CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc----ceeeEEecCCcEEEEEcC
Confidence 345688999999875 667766 888988887 355432 333322211 347999999999887654
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
.+.|..+|..+|+.+.++..... ..++++|.||++
T Consensus 246 -----------~g~I~~~dp~~g~~~~~i~~p~~----------------------------------~~t~~afg~d~~ 280 (314)
T d1pjxa_ 246 -----------SSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFKPQTK 280 (314)
T ss_dssp -----------TTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEECTTSS
T ss_pred -----------CCEEEEEeCCCCEEEEEEECCCC----------------------------------CEEEEEEeCCCC
Confidence 68999999988988888866543 788999999998
Q ss_pred EE-EEeeCCCcEEe
Q 012410 449 EI-YTGNRHGLVHV 461 (464)
Q Consensus 449 ~L-aSgs~DgtVrl 461 (464)
+| ++.+..|+|.-
T Consensus 281 ~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 281 TIFVTEHENNAVWK 294 (314)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEE
Confidence 76 45567777754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.72 E-value=3.8e-06 Score=80.40 Aligned_cols=219 Identities=10% Similarity=0.077 Sum_probs=138.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCCCc------------eeEEEEEcCCCcEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSSH------------VPLKILSIEDGTVLKV 255 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~d------------~tIklWdi~tG~~l~t 255 (464)
.++|+ ++|.+..+....+.|.-||.++++....+. ......|+|.++.. ..|-..+..+++....
T Consensus 44 G~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~ 122 (319)
T d2dg1a1 44 GLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 122 (319)
T ss_dssp EEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred eCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence 78996 899988888889999999988877665543 45678899977522 1122333344443333
Q ss_pred EeeC--CcceeeEEEEccCCCeEEEEeCC-------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE-EEEEe-CC
Q 012410 256 FYHL--LHRNKKVDFIEQFNEKLLVKQEN-------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NR 324 (464)
Q Consensus 256 l~~~--~~~~~~V~F~~~~~~~lla~s~D-------~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql-laS~s-D~ 324 (464)
..+. ..+...+++.++ +.+.++..+ +.+..++...+.. +.+......+..++|+||++. +++-+ .+
T Consensus 123 ~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~~ 199 (319)
T d2dg1a1 123 IEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTAN 199 (319)
T ss_dssp ECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ccCCCcccCCcceeEEec--cceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecccCC
Confidence 3321 123356777664 566665322 2355555444333 333334457889999999984 56666 89
Q ss_pred eEEEEeC--CCceEEEeccC------CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 325 TVAVWNF--RGELVTSFEDH------LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 325 TIklWd~--~Ge~l~tl~gH------~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
.|..+|+ .|......... .... -..+++.+||++.++... .+.|.++| .+|+.+.+
T Consensus 200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~----PdGl~vD~~G~l~Va~~~-----------~g~V~~~~-p~G~~l~~ 263 (319)
T d2dg1a1 200 RLHRIALEDDGVTIQPFGATIPYYFTGHEG----PDSCCIDSDDNLYVAMYG-----------QGRVLVFN-KRGYPIGQ 263 (319)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSSSE----EEEEEEBTTCCEEEEEET-----------TTEEEEEC-TTSCEEEE
T ss_pred ceEEEEEcCCCceeccccceeeeccCCccc----eeeeeEcCCCCEEEEEcC-----------CCEEEEEC-CCCcEEEE
Confidence 9999987 35544322211 0111 136999999998887654 79999999 58999998
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
+.--...+ -....+++++|.|++..|+..+.|
T Consensus 264 i~~P~~~~----------------------------~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 264 ILIPGRDE----------------------------GHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EECTTGGG----------------------------TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EeCCCcCC----------------------------CcCceeeeEEEeCCCCEEEEEcCC
Confidence 85321100 000167899999999988776543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.69 E-value=1.2e-06 Score=82.77 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=136.9
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|+++++-...+.+..++ .+|+..... .....+.+++|.|||+.+++ .+.. ..+.+++....... ..
T Consensus 39 G~l~vt~~~~~~I~~i~-p~g~~~~~~--~~~~~~~gla~~~dG~l~v~--~~~~--------~~~~~~~~~~~~~~-~~ 104 (302)
T d2p4oa1 39 GTIFVTNHEVGEIVSIT-PDGNQQIHA--TVEGKVSGLAFTSNGDLVAT--GWNA--------DSIPVVSLVKSDGT-VE 104 (302)
T ss_dssp SCEEEEETTTTEEEEEC-TTCCEEEEE--ECSSEEEEEEECTTSCEEEE--EECT--------TSCEEEEEECTTSC-EE
T ss_pred CCEEEEeCCCCEEEEEe-CCCCEEEEE--cCCCCcceEEEcCCCCeEEE--ecCC--------ceEEEEEecccccc-ee
Confidence 89999999899888888 556544333 24456899999999997777 2232 24445554433221 11
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~ 257 (464)
.+........+..++|+ ++|+++++.+.++.+..+|..++....-+.+... .+. .. .
T Consensus 105 ~~~~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~---------~~--------~ 161 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-----ARS---------NS--------E 161 (302)
T ss_dssp EEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-----SCS---------ST--------T
T ss_pred eccccCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCcc-----cee---------ec--------c
Confidence 12221223556789996 8999999988898888888776653211110000 000 00 0
Q ss_pred eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
........+.+. ++.+.. .+.++.|..+|+....... ... +...+..++|.+||.++++.. +++|..++.+
T Consensus 162 ~~~~~~ngi~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 162 SVFPAANGLKRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp CCSCSEEEEEEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred Cccccccccccc---CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence 000122334442 344544 4577788777766543221 111 234577899999999999988 9999999988
Q ss_pred CceEEEe--ccCCCCcCCCCeeEEEE---CCCCCEEEEE
Q 012410 333 GELVTSF--EDHLLWHPDCNTNNIYI---TSDQDLIISY 366 (464)
Q Consensus 333 Ge~l~tl--~gH~~~~~~~~v~svaf---SpDg~~LaSg 366 (464)
|+..... ...... ..+++| +||++.|.-.
T Consensus 238 G~~~~~~~~~~~~~~-----pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 238 RSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp CCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEE
T ss_pred CCEEEEEecCCCCCC-----ceEEEEcCCCCCCCEEEEE
Confidence 8865443 333333 679999 8899987544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.66 E-value=7.7e-06 Score=78.36 Aligned_cols=236 Identities=11% Similarity=0.048 Sum_probs=142.7
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
...++|.|+|..+++.. .......+-.+|..++..+|+.............+.|..++|+ +||..|..+.....+.
T Consensus 20 ~EGpa~d~dG~ly~~~~---~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAP---EVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADMRLGLL 95 (314)
T ss_dssp CEEEEECTTSCEEEEET---TCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEETTTEEE
T ss_pred CeEeEEeCCCCEEEEEC---ccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEe-CCCCEEEEEECCCeEE
Confidence 45678999998776622 1111111123455566666654211111111123457789997 8998777676667788
Q ss_pred EEeCCCCeEEEEec--C----CCEeEEEEeCCCc---------------------eeEEEEEcC-CCcEEEEEeeCCcce
Q 012410 212 VFDLKNYTMLYSIS--D----KHVQEIKIRSSSH---------------------VPLKILSIE-DGTVLKVFYHLLHRN 263 (464)
Q Consensus 212 lWdl~tg~~l~tl~--~----~~V~~Vafs~s~d---------------------~tIklWdi~-tG~~l~tl~~~~~~~ 263 (464)
..|..++....... + ....+++|.++.. ..=+||-+. +|+......+. ..-
T Consensus 96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~-~~p 174 (314)
T d1pjxa_ 96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF-QFP 174 (314)
T ss_dssp EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE-SSE
T ss_pred EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc-cee
Confidence 88976554321111 1 1246778865311 011344332 57766555432 334
Q ss_pred eeEEEEccCCC---eEEEE-eCCCeEEEEECCCC-cEE-----EEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 264 KKVDFIEQFNE---KLLVK-QENENLQILDVRNA-ELM-----EVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 264 ~~V~F~~~~~~---~lla~-s~D~tIkIWDv~tg-~~l-----~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
..++|+++.++ .|.++ +..+.|..+|+... ... ..+.+ +...+..+++..+|++.++.. .+.|.++|.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 68999985332 46555 57888888886543 321 12222 334678899999999998877 889999998
Q ss_pred C-CceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeC
Q 012410 332 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 332 ~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+ |+.+.++..+..+ ..+++|.||++.| ++.+. .++|.--++
T Consensus 255 ~~g~~~~~i~~p~~~-----~t~~afg~d~~~lyVt~~~-----------~g~i~~~~~ 297 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEHE-----------NNAVWKFEW 297 (314)
T ss_dssp TCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEETT-----------TTEEEEEEC
T ss_pred CCCEEEEEEECCCCC-----EEEEEEeCCCCEEEEEECC-----------CCcEEEEEC
Confidence 5 7788888776655 6789999999855 54433 677666554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.65 E-value=3.6e-06 Score=77.72 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=132.8
Q ss_pred cceeeh-hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFA-LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~-l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
|++..+ -...+.+..++..+.... .+.......-..|+++++|.++++ ...+ +.+++.+-..+..
T Consensus 25 G~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i~v~----d~~~------~~i~~~~~~~~~~--- 90 (260)
T d1rwia_ 25 GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVT----DFNN------RVVTLAAGSNNQT--- 90 (260)
T ss_dssp CCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCEEEE----ETTT------EEEEECTTCSCCE---
T ss_pred CCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCEEEe----eeee------ceeeeeeecccee---
Confidence 675443 345566666642322222 222222233578999999987655 2333 4555443222221
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl 256 (464)
.+..+.+..|..|+++ ++|++.+.-.....+.+.+...... .... .+|
T Consensus 91 --~~~~~~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~----------------------~~~------ 138 (260)
T d1rwia_ 91 --VLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQ-TVLP----------------------FTG------ 138 (260)
T ss_dssp --ECCCCSCCSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSC-EECC----------------------CCS------
T ss_pred --eeeeeeeeeccccccc-ccceeEeecccccccccccccccee-eeee----------------------ecc------
Confidence 2222334678899996 8998887655555555554322111 0000 001
Q ss_pred eeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
......+++.+. +.+.+ ...++.|..+|...........++...|..++|.++|+++++-. ++.|...+..|.
T Consensus 139 ---~~~p~~i~~~~~--g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 139 ---LNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp ---CCSCCEEEECTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred ---cCCcceeeecCC--CCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 122255666553 34444 45778899999776665555557778899999999999999988 888888888666
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
....+..-.... -..|+|++||.++++-.. .++|+..+
T Consensus 214 ~~~~~~~~~~~~----P~~i~~d~~g~l~vad~~-----------~~rI~~i~ 251 (260)
T d1rwia_ 214 TSTVLPFTGLNT----PLAVAVDSDRTVYVADRG-----------NDRVVKLT 251 (260)
T ss_dssp CCEECCCCSCCC----EEEEEECTTCCEEEEEGG-----------GTEEEEEC
T ss_pred eEEEEccCCCCC----eEEEEEeCCCCEEEEECC-----------CCEEEEEe
Confidence 555554332221 468999999999987543 56666544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=7.5e-07 Score=90.52 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=137.8
Q ss_pred hccCCeEEeeecccccEeeEeecC--CCceEEEEEEeeCCCEEEEEEeecCCCCc-ccceeeEEEEEeccCCCCCcccce
Q 012410 104 LAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFS-SLKCRSTKIEYIRRGKPDSGFALF 180 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~ln~~--~~~~i~Sv~fs~~g~~l~svSa~~sddfs-~L~~~ti~l~~i~~G~~~~~~~l~ 180 (464)
...+|.+.+|++.+|+....+... ....+.+..|||||+.++..+. ....| +-.-....|.|+++|.... +.
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~--~~~~~r~s~~~~~~i~d~~~~~~~~---l~ 107 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN--VEPIYQHSYTGYYVLSKIPHGDPQS---LD 107 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES--CCCCSSSCCCSEEEEEESSSCCCEE---CC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEc--ccceeEeeccccEEEEEccCCceee---cc
Confidence 456778899999988864444332 2234677889999999877442 12222 1122467788999888631 21
Q ss_pred eec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCE-----------------eEEEEeCC--
Q 012410 181 ESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHV-----------------QEIKIRSS-- 237 (464)
Q Consensus 181 ~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V-----------------~~Vafs~s-- 237 (464)
..+ .-+-....+|| |||+.||... ++.+-+.+..++...+...+ +.| ..+-|||+
T Consensus 108 ~~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk 185 (465)
T d1xfda1 108 PPEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (465)
T ss_dssp CTTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred CccCCccccceeeec-cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC
Confidence 110 00111257887 9999999876 45566777766655432221 111 12334441
Q ss_pred ----------------------------------------CceeEEEEEcCCCcEEEEEe--e----CCcceeeEEEEcc
Q 012410 238 ----------------------------------------SHVPLKILSIEDGTVLKVFY--H----LLHRNKKVDFIEQ 271 (464)
Q Consensus 238 ----------------------------------------~d~tIklWdi~tG~~l~tl~--~----~~~~~~~V~F~~~ 271 (464)
....+.+.|++++....... . ..+-...+.|+++
T Consensus 186 ~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d 265 (465)
T d1xfda1 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (465)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC
Confidence 12356778888775433211 0 1112356778663
Q ss_pred CCCeEEEE--eCC---CeEEEEECCCCcEEEEcccCCC-ce----EEEEEcCCCcEE--EEEe--CCeEEEE--------
Q 012410 272 FNEKLLVK--QEN---ENLQILDVRNAELMEVSRTEFM-TP----SAFIFLYENQLF--LTFR--NRTVAVW-------- 329 (464)
Q Consensus 272 ~~~~lla~--s~D---~tIkIWDv~tg~~l~~l~gh~~-~v----~sv~Fspdgqll--aS~s--D~TIklW-------- 329 (464)
+++++. ..+ ..|.++|+.+|++...+..+.. +| ....|+|||+.+ +..+ ++.=.++
T Consensus 266 --~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~ 343 (465)
T d1xfda1 266 --TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (465)
T ss_dssp --SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred --CeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEecccc
Confidence 566663 222 3577899999999876543321 22 245799999853 3222 3322222
Q ss_pred -eCCCceEEEeccCCCCcCCCCeeEE-EECCCCCEEE
Q 012410 330 -NFRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLII 364 (464)
Q Consensus 330 -d~~Ge~l~tl~gH~~~~~~~~v~sv-afSpDg~~La 364 (464)
+..|+.++-|+ +..|. |..+ +|.++++.|.
T Consensus 344 ~~~~~~~~~~LT-~G~w~----V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 344 PNSSNDNIQSIT-SGDWD----VTKILAYDEKGNKIY 375 (465)
T ss_dssp CCSSSCCCCBSC-CSSSC----EEEEEEEETTTTEEE
T ss_pred ccCCCceeEEec-cCCce----EEEEEEEcCCCCEEE
Confidence 12344444444 34553 5554 6888888764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.60 E-value=1.9e-06 Score=77.56 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=121.0
Q ss_pred EEeeC--CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC----CC-
Q 012410 136 FYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----DS- 208 (464)
Q Consensus 136 ~fs~~--g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~----D~- 208 (464)
+.||+ |+.++-++ ++ .+.+.++..|+.. +|-.. -+.....+|| |||+.||..+. +.
T Consensus 5 ~~sPdi~G~~v~f~~----~~-------dl~~~d~~~g~~~---~Lt~~--~~~~~~p~~S-PDG~~iaf~~~~~~~~~~ 67 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC----CD-------DLWEHDLKSGSTR---KIVSN--LGVINNARFF-PDGRKIAIRVMRGSSLNT 67 (281)
T ss_dssp CEEEEEETTEEEEEE----TT-------EEEEEETTTCCEE---EEECS--SSEEEEEEEC-TTSSEEEEEEEESTTCCE
T ss_pred ccCCCCCCCEEEEEe----CC-------cEEEEECCCCCEE---EEecC--CCcccCEEEC-CCCCEEEEEEeeCCCCCc
Confidence 56899 99987644 33 3555577777752 23222 1334478998 99999997643 22
Q ss_pred -cEEEEeCCCCeEEEE-ecC-------CCEeEEEEeCCC--------------ceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 209 -IYKVFDLKNYTMLYS-ISD-------KHVQEIKIRSSS--------------HVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 209 -tiKlWdl~tg~~l~t-l~~-------~~V~~Vafs~s~--------------d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
.|-+.++.+|+.... ... ..+..++++|++ ...+.+.+...++...... .....
T Consensus 68 ~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 144 (281)
T d1k32a2 68 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPATH 144 (281)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCSE
T ss_pred eEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cccce
Confidence 366667777776532 111 124556666532 2345666776655433222 22222
Q ss_pred EEEEccCCCeEEEE-eC-C----------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCC--eEEEEeC
Q 012410 266 VDFIEQFNEKLLVK-QE-N----------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR--TVAVWNF 331 (464)
Q Consensus 266 V~F~~~~~~~lla~-s~-D----------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~--TIklWd~ 331 (464)
+ +.++ ++.++.. .. + ....+.....+........+ .......++++...+++..++ .|-+.|+
T Consensus 145 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 221 (281)
T d1k32a2 145 I-LFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS-THVSSPVIVGHRIYFITDIDGFGQIYSTDL 221 (281)
T ss_dssp E-EEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS-SCCEEEEEETTEEEEEECTTSSCEEEEEET
T ss_pred e-eecC-CCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCc-cccceeeeeccccceecccccccceEEEeC
Confidence 3 3342 3444442 21 1 12233333334433333333 344555667765444443344 4556677
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+|+-++-+..+..+ ....|||||+.||-.. ++.|.+.|+.+|+--
T Consensus 222 ~g~~~~~lt~~~~~------~~~~~SpDG~~I~f~~------------~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 222 DGKDLRKHTSFTDY------YPRHLNTDGRRILFSK------------GGSIYIFNPDTEKIE 266 (281)
T ss_dssp TSCSCEECCCCCSS------CEEEEEESSSCEEEEE------------TTEEEEECTTTCCEE
T ss_pred CCCceEEeecCCCc------ccccCcCCCCEEEEEe------------CCEEEEEECCCCCEE
Confidence 77666667666543 2346899999988532 688999999888854
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.55 E-value=4.9e-05 Score=72.41 Aligned_cols=214 Identities=11% Similarity=0.121 Sum_probs=131.9
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC--Cc
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--SI 209 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D--~t 209 (464)
+..++|.++|+.+.+ +... +.|.-++...++.. ....+....|..++|+ +||++++....+ .+
T Consensus 42 lEG~~~D~~G~Ly~~---D~~~-------g~I~ri~p~g~~~~----~~~~~~~~~p~gla~~-~dG~l~va~~~~~~~~ 106 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLL---DVFE-------GNIFKINPETKEIK----RPFVSHKANPAAIKIH-KDGRLFVCYLGDFKST 106 (319)
T ss_dssp EEEEEECTTSCEEEE---ETTT-------CEEEEECTTTCCEE----EEEECSSSSEEEEEEC-TTSCEEEEECTTSSSC
T ss_pred cEeCEECCCCCEEEE---ECCC-------CEEEEEECCCCeEE----EEEeCCCCCeeEEEEC-CCCCEEEEecCCCccc
Confidence 467888888874444 2222 34444443333321 1111233567799997 899988865432 33
Q ss_pred EEEE--eCCCCeEEEEec----CCCEeEEEEeCCCc--------------eeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 210 YKVF--DLKNYTMLYSIS----DKHVQEIKIRSSSH--------------VPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 210 iKlW--dl~tg~~l~tl~----~~~V~~Vafs~s~d--------------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
..+. |..++....... ......+++.|+.. ..+..++.. |+.+..+......-..++|+
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s 185 (319)
T d2dg1a1 107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALS 185 (319)
T ss_dssp CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEEC
T ss_pred eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeec
Confidence 4444 444454443333 24577888876421 234444444 44334333222344789998
Q ss_pred ccCCCeEEEE-eCCCeEEEEECCC-CcEEE-------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEe
Q 012410 270 EQFNEKLLVK-QENENLQILDVRN-AELME-------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSF 339 (464)
Q Consensus 270 ~~~~~~lla~-s~D~tIkIWDv~t-g~~l~-------~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl 339 (464)
|+ ++.|.++ +..+.|..+|+.. +.... ...+....+..+++..+|++.++.. ++.|.++|-+|+.+.++
T Consensus 186 ~d-g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 186 TD-EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp TT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred cc-cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence 84 5566555 5788999998753 22211 1122234588899999999999988 99999999999999887
Q ss_pred c------cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 340 E------DHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 340 ~------gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
. +|..+ +.+++|.|+++.|+...
T Consensus 265 ~~P~~~~~~~~~-----~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 265 LIPGRDEGHMLR-----STHPQFIPGTNQLIICS 293 (319)
T ss_dssp ECTTGGGTCSCB-----CCEEEECTTSCEEEEEE
T ss_pred eCCCcCCCcCce-----eeeEEEeCCCCEEEEEc
Confidence 5 44444 67899999998777654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=0.0003 Score=62.63 Aligned_cols=215 Identities=7% Similarity=0.011 Sum_probs=115.4
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc-c-cceeeccc
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-F-ALFESESL 185 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~-~-~l~~~~~~ 185 (464)
|-+-+.++.+|+. ..|.. +...+.+..|||||+.||-++.....+ ....+.+.+...|+...- . ..-.....
T Consensus 21 ~dl~~~d~~~g~~-~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~----~~~~i~~~~~~~g~~~~lt~~~~~~~~~~ 94 (281)
T d1k32a2 21 DDLWEHDLKSGST-RKIVS-NLGVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENGEIKRITYFSGKSTGRR 94 (281)
T ss_dssp TEEEEEETTTCCE-EEEEC-SSSEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred CcEEEEECCCCCE-EEEec-CCCcccCEEECCCCCEEEEEEeeCCCC----CceEEEEEEecCCceEEeeecCCCccCcc
Confidence 3455557565654 45644 455689999999999998765333322 113455556566654210 0 00001112
Q ss_pred cCceEEEEeCCCCcEEEEecC------CCcEEEEeCCCCeEEEEecCCCEeEEEEeC-------------------CCce
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKHVQEIKIRS-------------------SSHV 240 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~------D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-------------------s~d~ 240 (464)
.....++|+ |||+.|++... ...+.+.+...+..... .......+.+++ ....
T Consensus 95 ~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (281)
T d1k32a2 95 MFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTR 172 (281)
T ss_dssp ECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTC
T ss_pred ccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeEEe-cCCccceeeecCCCeEEEeeccccceeeeeccCCc
Confidence 233478897 99999998543 33455666655554322 111111222211 0112
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql 317 (464)
...+.....++......+. .....+.+.+ +.++... ....|-++|+.+++..+...+....+ ..|||||+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~~SpDG~~ 246 (281)
T d1k32a2 173 GKIWIEVNSGAFKKIVDMS-THVSSPVIVG---HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP--RHLNTDGRR 246 (281)
T ss_dssp CEEEEEEETTEEEEEECCS-SCCEEEEEET---TEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE--EEEEESSSC
T ss_pred ceeeeeccccceeeccCCc-cccceeeeec---cccceecccccccceEEEeCCCCceEEeecCCCccc--ccCcCCCCE
Confidence 2333334434333333322 3334444444 3444433 34567778988888665433332233 358999999
Q ss_pred EEEEeCCeEEEEeCC-CceE
Q 012410 318 FLTFRNRTVAVWNFR-GELV 336 (464)
Q Consensus 318 laS~sD~TIklWd~~-Ge~l 336 (464)
|+-..++.|.+.|+. |+..
T Consensus 247 I~f~~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 247 ILFSKGGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEEEETTEEEEECTTTCCEE
T ss_pred EEEEeCCEEEEEECCCCCEE
Confidence 886568989999995 6643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=0.00089 Score=62.89 Aligned_cols=209 Identities=10% Similarity=0.042 Sum_probs=134.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC------ceeEEEEEcCCCcEEEEEe--eC--
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS------HVPLKILSIEDGTVLKVFY--HL-- 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~------d~tIklWdi~tG~~l~tl~--~~-- 259 (464)
...+++.+|.+.-.--..+.|.-||.++++...--....+..+++.++. ..-|.++|.++|+...... ..
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~ 101 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLP 101 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCC
Confidence 3445434554444444566777788887765421124567777775532 2348889999997644332 11
Q ss_pred CcceeeEEEEccCCCeEEEEe-----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE-EEEEe-CCeEEEEeCC
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFR 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s-----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql-laS~s-D~TIklWd~~ 332 (464)
..+...+.+.++ +.+.++. ..+.-.+|.+..|+......+ ...+..++|+||++. +.+-+ .+.|..++++
T Consensus 102 ~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 102 GNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp TEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred cccceeeEECCC--CCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 123466666553 6666654 223556788788887766654 356889999999985 45556 8888888763
Q ss_pred Cc--e-------EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 333 GE--L-------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 333 Ge--~-------l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
++ . ...+.+-... ...+++.++|.+.++.-. .+.|..+| .+|+.+..++--..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~-----pdG~~vD~~GnlWva~~~-----------~g~V~~~d-p~G~~~~~i~lP~~- 240 (295)
T d2ghsa1 179 ARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYD-TDGNHIARYEVPGK- 240 (295)
T ss_dssp TTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEEC-TTCCEEEEEECSCS-
T ss_pred ccccccccceEEEeccCccccc-----ccceEEcCCCCEEeeeeC-----------CCceEEec-CCCcEeeEecCCCC-
Confidence 21 1 1222232222 468999999998887543 67899999 58999998854332
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEE
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYT 452 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaS 452 (464)
.+++++|- ||+++|+-
T Consensus 241 ---------------------------------~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 241 ---------------------------------QTTCPAFIGPDASRLLV 257 (295)
T ss_dssp ---------------------------------BEEEEEEESTTSCEEEE
T ss_pred ---------------------------------ceEEEEEeCCCCCEEEE
Confidence 78999995 89999873
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=0.0025 Score=59.73 Aligned_cols=191 Identities=11% Similarity=0.059 Sum_probs=127.4
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKI 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vaf 234 (464)
+.|.-++.++|+. ..+... ..++++++. +||.+|+. +.++ +.++|.++|+...-.. ...+.++++
T Consensus 40 ~~I~r~d~~~g~~----~~~~~~--~~~~~i~~~-~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v 110 (295)
T d2ghsa1 40 RELHELHLASGRK----TVHALP--FMGSALAKI-SDSKQLIA-SDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRM 110 (295)
T ss_dssp TEEEEEETTTTEE----EEEECS--SCEEEEEEE-ETTEEEEE-ETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEECC--CCcEEEEEe-cCCCEEEE-EeCc-cEEeecccceeeEEeeeecCCCcccceeeEE
Confidence 4555566666653 233322 446689997 79988875 4554 8889999998643221 134677777
Q ss_pred eCCC------------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCC------Cc-
Q 012410 235 RSSS------------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN------AE- 294 (464)
Q Consensus 235 s~s~------------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~t------g~- 294 (464)
.|+. ...-.++.+.+|+....+... .....++|+++ +..+.. -+..+.|..+++.. ++
T Consensus 111 d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d-~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 111 HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCC-CceEEEeecccceeeEeeecccccccccce
Confidence 6531 123467778888876666543 44478999884 455555 45778888887632 11
Q ss_pred -EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEe
Q 012410 295 -LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYC 367 (464)
Q Consensus 295 -~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafS-pDg~~LaSgs 367 (464)
....+.+....+..+++..+|++.++.- .+.|..+|-+|+++..++--... +.+++|- ||.+.|.-.+
T Consensus 189 ~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~-----~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 189 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQ-----TTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSB-----EEEEEEESTTSCEEEEEE
T ss_pred EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCc-----eEEEEEeCCCCCEEEEEE
Confidence 2223445556789999999999998876 88899999999999988644333 7899995 7877776433
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1e-05 Score=81.85 Aligned_cols=153 Identities=5% Similarity=0.006 Sum_probs=92.0
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCC---CceEEEEEcCCCcEEEEEe----------CCeEEEEeC-CCceEEEe
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEF---MTPSAFIFLYENQLFLTFR----------NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~---~~v~sv~FspdgqllaS~s----------D~TIklWd~-~Ge~l~tl 339 (464)
+.++-...|+.|.+||+.+++....+..+. ..+.+..|||||+.++-+. .+.+-|+|+ +|+... +
T Consensus 28 ~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l 106 (465)
T d1xfda1 28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-L 106 (465)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-C
T ss_pred CcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-c
Confidence 344445678899999999988644443322 3567788999999877654 356788898 576533 3
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
....... ..+....|||||+.||=.. ++.|.+.+..+|+-++....-.. +.+.
T Consensus 107 ~~~~~~~--~~l~~~~wSPDG~~iafv~------------~~nl~~~~~~~~~~~~lt~~g~~---~~i~---------- 159 (465)
T d1xfda1 107 DPPEVSN--AKLQYAGWGPKGQQLIFIF------------ENNIYYCAHVGKQAIRVVSTGKE---GVIY---------- 159 (465)
T ss_dssp CCTTCCS--CCCSBCCBCSSTTCEEEEE------------TTEEEEESSSSSCCEEEECCCBT---TTEE----------
T ss_pred cCccCCc--cccceeeeccCCceEEEEe------------cceEEEEecCCCceEEEecccCc---ceee----------
Confidence 2221110 1144577999999998765 68888889888876654422110 0000
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
+-.--|--..+....=.++.|||||+.||....|.
T Consensus 160 ---nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~ 194 (465)
T d1xfda1 160 ---NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (465)
T ss_dssp ---EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred ---ccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence 00000000011112235678999999999887443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.49 E-value=0.016 Score=59.34 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=90.7
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEE--------EccCCC---eEEEEeCCCeEEEEECCCCcEEEEccc--------
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDF--------IEQFNE---KLLVKQENENLQILDVRNAELMEVSRT-------- 301 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F--------~~~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~g-------- 301 (464)
.|--.|++||+..-.++...|.++..+. .+.++. .++.++.++.+.++|..||+.+-..+.
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 4566789999998887743343332221 111221 233367999999999999998753221
Q ss_pred ----------------------------CCCceEEEEEcCCCcEEEEEe-C-----------------------------
Q 012410 302 ----------------------------EFMTPSAFIFLYENQLFLTFR-N----------------------------- 323 (464)
Q Consensus 302 ----------------------------h~~~v~sv~FspdgqllaS~s-D----------------------------- 323 (464)
..++. ..+|+|+..++.... +
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~-~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH-PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS-CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cccccceeeeeeccccccceEEeecccCCcccc-ccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence 11111 246788877665533 3
Q ss_pred --------------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 324 --------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 324 --------------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+++.-||. +||.+-+.+....+ ++=.++-.|.+++.|+. ||.++-+|.
T Consensus 443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~-----------dg~l~A~Da 505 (573)
T d1kb0a2 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTA-----------DGRLVAYHA 505 (573)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEET
T ss_pred ccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECC-----------CCeEEEEEC
Confidence 35777888 68887766655432 11223447888888875 999999999
Q ss_pred CCCeEEEEEcc
Q 012410 389 LTGKCLAKINA 399 (464)
Q Consensus 389 ~tG~cl~tl~g 399 (464)
.||+-|.+++-
T Consensus 506 ~TGe~LW~~~~ 516 (573)
T d1kb0a2 506 ATGEKLWEAPT 516 (573)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEeEEEEC
Confidence 99999988754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.47 E-value=0.034 Score=56.70 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=91.6
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEE--------EEccCCC--eEE-EEeCCCeEEEEECCCCcEEEEcc-cCCCce--
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVD--------FIEQFNE--KLL-VKQENENLQILDVRNAELMEVSR-TEFMTP-- 306 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~--------F~~~~~~--~ll-a~s~D~tIkIWDv~tg~~l~~l~-gh~~~v-- 306 (464)
.|--.|+.||+..-.++...|.++..+ -+..+++ .++ ..+.++.+.++|..||+++.... +...+.
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 456669999999988885434443211 1111221 233 36799999999999999875321 110000
Q ss_pred ---------------------------------EEEEEcCCCcEEEEEe-C-----------------------------
Q 012410 307 ---------------------------------SAFIFLYENQLFLTFR-N----------------------------- 323 (464)
Q Consensus 307 ---------------------------------~sv~FspdgqllaS~s-D----------------------------- 323 (464)
...++.|+.+++.... +
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 1346788887766543 3
Q ss_pred -------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 324 -------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 324 -------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+.|.-||. +|+.+-...--... ++=.++-.|.+++.|+. ||.++-.|..||+.|.
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~------~gg~l~TagglVF~G~~-----------dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALW 493 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCCC------CCceeEECCCEEEEECC-----------CCcEEEEECCCCcEeE
Confidence 46888998 79987655432221 22234445778888775 9999999999999998
Q ss_pred EEccC
Q 012410 396 KINAT 400 (464)
Q Consensus 396 tl~gh 400 (464)
+++--
T Consensus 494 ~~~l~ 498 (560)
T d1kv9a2 494 QFEAQ 498 (560)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 87643
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.44 E-value=0.07 Score=54.42 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=46.5
Q ss_pred CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
++|.-+|+ +||++-..+.+... ++=.++..|.+++.|+. ||.++-+|..|||.|..++--
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~------~~g~lstagglVF~Gt~-----------dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEcCCCCcEEeecCCCCCC------ccceeEEcCCeEEEeCC-----------CCeEEEEECCCCcEeEEEECC
Confidence 57888998 79998877766432 22334567888888875 999999999999999988643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.43 E-value=0.027 Score=57.69 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=87.1
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEE-------E-EccCCCe---EEEEeCCCeEEEEECCCCcEEEEc--c-------
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVD-------F-IEQFNEK---LLVKQENENLQILDVRNAELMEVS--R------- 300 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~-------F-~~~~~~~---lla~s~D~tIkIWDv~tg~~l~~l--~------- 300 (464)
.|--.|++||+++-.++...|.++..+ + .+.+++. ++..+.++.+.+.|..||+.+... .
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~ 352 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence 566789999999999985434433221 1 1112221 233679999999999999987421 0
Q ss_pred --------------------------------cCCCceEEEEEcCCCcEEEEEe-C------------------------
Q 012410 301 --------------------------------TEFMTPSAFIFLYENQLFLTFR-N------------------------ 323 (464)
Q Consensus 301 --------------------------------gh~~~v~sv~FspdgqllaS~s-D------------------------ 323 (464)
++.. ...+|+|+..++.... +
T Consensus 353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w--~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQ--GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCS--CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccCcccccccccCceEEEecccccccc--ccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 1111 1246788877765433 3
Q ss_pred -------------CeEEEEeC-CCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 324 -------------RTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 324 -------------~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
++|.-+|. +|+.+-+.. +...+ ... ++-.|.+++.|+. |+.++-.|.
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~------~g~-l~TagglVf~G~~-----------dg~l~A~Da 492 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW------GGT-LYTKGGLVWYATL-----------DGYLKALDN 492 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCC------SBC-EEETTTEEEEECT-----------TSEEEEEET
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCC------cce-eEecCCEEEEECC-----------CCeEEEEEC
Confidence 36777888 688775443 22111 111 2334667777765 999999999
Q ss_pred CCCeEEEEEcc
Q 012410 389 LTGKCLAKINA 399 (464)
Q Consensus 389 ~tG~cl~tl~g 399 (464)
.||+-|..++-
T Consensus 493 ~tGe~lW~~~l 503 (571)
T d2ad6a1 493 KDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEEEEEEC
Confidence 99999987743
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.73 E-value=0.87 Score=43.03 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCCeEEEEECCCC--cEE--EEccc-CCCceEEEEEcCCCcEEEEE--e--C------------CeEEEEeCCCceEEEe
Q 012410 281 ENENLQILDVRNA--ELM--EVSRT-EFMTPSAFIFLYENQLFLTF--R--N------------RTVAVWNFRGELVTSF 339 (464)
Q Consensus 281 ~D~tIkIWDv~tg--~~l--~~l~g-h~~~v~sv~FspdgqllaS~--s--D------------~TIklWd~~Ge~l~tl 339 (464)
..++|.|+++..+ ++. .+..+ ....+..|++..+|..++|- . + .+..+|..+++..+.+
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~ 201 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 201 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence 4567777765432 222 23332 23578999999999999982 1 1 3667888765545555
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
...... -|.|++|||+++|.-+.. ..++|+.+++...
T Consensus 202 ~~~l~~-----pNGI~~s~d~~~lyVa~t----------~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 202 AEGFDF-----ANGINISPDGKYVYIAEL----------LAHKIHVYEKHAN 238 (340)
T ss_dssp EEEESS-----EEEEEECTTSSEEEEEEG----------GGTEEEEEEECTT
T ss_pred cCCCCc-----cceeEECCCCCEEEEEeC----------CCCeEEEEEeCCC
Confidence 444444 589999999998766543 2788999988643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.60 E-value=0.82 Score=41.76 Aligned_cols=226 Identities=8% Similarity=-0.018 Sum_probs=109.9
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-CcEEEEeCCCCeEEEE--ec-CCCEeEEEEeCC
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYS--IS-DKHVQEIKIRSS 237 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-~tiKlWdl~tg~~l~t--l~-~~~V~~Vafs~s 237 (464)
.+.+||..+++....-.... .+..+-..+++. +||++++.|+.+ .++.+||.++.+-... +. ...-...+..++
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d 130 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD 130 (387)
T ss_dssp EEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred EEEEEECCCCcEeecCCCCC-CcccceeEEEEe-cCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC
Confidence 57789999988753222222 111112257786 899999998765 5899999988765421 11 111122222211
Q ss_pred --------------CceeEEEEEcCCCcEEEEEeeC-Cc-------------ceeeEEEEccCCCeEEE-EeCCCeEEEE
Q 012410 238 --------------SHVPLKILSIEDGTVLKVFYHL-LH-------------RNKKVDFIEQFNEKLLV-KQENENLQIL 288 (464)
Q Consensus 238 --------------~d~tIklWdi~tG~~l~tl~~~-~~-------------~~~~V~F~~~~~~~lla-~s~D~tIkIW 288 (464)
.-..+.+||..+++-.. +... .. ......|...+ ++++. ++.+..+.+.
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~g~~~~~~~~~ 208 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKK-GSVFQAGPSTAMNWYY 208 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGG-GCEEECCSSSEEEEEE
T ss_pred CceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccceeeccceeEEEEeCC-CCEEEecCcCCcEEec
Confidence 12468999998875432 2100 00 00122232222 34433 5566677777
Q ss_pred ECCCCcEEEEc--ccC----C--CceEEEEE-cCCCcEEEEEe--CC-------eEEEEeC---C-CceEEEeccCCCCc
Q 012410 289 DVRNAELMEVS--RTE----F--MTPSAFIF-LYENQLFLTFR--NR-------TVAVWNF---R-GELVTSFEDHLLWH 346 (464)
Q Consensus 289 Dv~tg~~l~~l--~gh----~--~~v~sv~F-spdgqllaS~s--D~-------TIklWd~---~-Ge~l~tl~gH~~~~ 346 (464)
|..+..-.... ... . ..-.++.+ ..+|++++.++ ++ ...+.++ . ..-..+.... ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ 287 (387)
T d1k3ia3 209 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-LYF 287 (387)
T ss_dssp CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-CSS
T ss_pred CcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccc-ccc
Confidence 77776543321 111 0 01123333 35677777765 21 2223332 1 1111111111 111
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+.. --+.+..|||++++.|+..............++.+||..+++-
T Consensus 288 ~r~-~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W 333 (387)
T d1k3ia3 288 ART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 333 (387)
T ss_dssp CCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred ccc-cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence 111 1245667999999998852111100001123688999887753
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.08 E-value=0.19 Score=46.36 Aligned_cols=100 Identities=9% Similarity=-0.091 Sum_probs=64.9
Q ss_pred EEEEECCCCcEEE---EcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECC
Q 012410 285 LQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 285 IkIWDv~tg~~l~---~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+-+||+.+++..+ ....|.....+.++.+||++++.++ ..++.+||.. +.- ..+..-..... --+.+..+
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w-~~~~~~~~~r~---~~~~~~~~ 129 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-IPGPDMQVARG---YQSSATMS 129 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-EECCCCSSCCS---SCEEEECT
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc-ccccccccccc---ccceeeec
Confidence 6799999987433 2233333445678999999999997 4699999984 443 33332221111 23688899
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 359 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 359 Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
||++++.|+.... ...-.++.+||..+.+-
T Consensus 130 dG~v~v~GG~~~~-----~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 130 DGRVFTIGGSWSG-----GVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp TSCEEEECCCCCS-----SSCCCCEEEEETTTTEE
T ss_pred CCceeeecccccc-----ccccceeeeecCCCCce
Confidence 9999999874111 01125788999887653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.07 E-value=0.17 Score=49.90 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=47.9
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE--EEeccCCC-CcCCCCeeEEEECCC----CCEEEEE
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV--TSFEDHLL-WHPDCNTNNIYITSD----QDLIISY 366 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l--~tl~gH~~-~~~~~~v~svafSpD----g~~LaSg 366 (464)
++++...-..+++++|.|||++|++-. .|+|++.+. +|+.. ..+..-.. .....-.-.|+|+|| +.+-+|+
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy 98 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence 334444457899999999999999998 899999997 45542 23321110 000012568999996 6677776
Q ss_pred ec
Q 012410 367 CK 368 (464)
Q Consensus 367 s~ 368 (464)
+.
T Consensus 99 t~ 100 (450)
T d1crua_ 99 TF 100 (450)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=1.2 Score=40.06 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=120.9
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcCCCcEEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl 256 (464)
+-.|+|+.-++++.-+-..++.|+.-++..+.....+.. ..+..||+.. .....|.+.++....+ .++
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l 116 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL 116 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEE
Confidence 336999844454544556778899989876555444442 4678888853 2445788888764433 334
Q ss_pred e-eCCcceeeEEEEccCCCeEEEEeCC-CeEEEE--ECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CCeEEEEe
Q 012410 257 Y-HLLHRNKKVDFIEQFNEKLLVKQEN-ENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWN 330 (464)
Q Consensus 257 ~-~~~~~~~~V~F~~~~~~~lla~s~D-~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~TIklWd 330 (464)
. ..+.....++..|. ++.+.....+ +.-+|+ ++...............|.++++.+.++.| .+-. .++|..-|
T Consensus 117 ~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp ECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence 3 33355688998884 5666655422 343454 554444344333444678999998766644 5555 88999999
Q ss_pred CCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 331 FRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 331 ~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
.+|.-.++ +.+-. +| .+|++. +..|.-... ..++|.--|..+|+-+.++..+.
T Consensus 196 ~~g~~~~~v~~~~~--~P----~~lav~--~~~lYwtd~----------~~~~I~~~~~~~g~~~~~~~~~~ 249 (263)
T d1npea_ 196 PAQPGRRKVLEGLQ--YP----FAVTSY--GKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPHK 249 (263)
T ss_dssp TTEEEEEEEEECCC--SE----EEEEEE--TTEEEEEET----------TTTEEEEEETTTTEEEEEECCSS
T ss_pred CCCCCeEEEECCCC--Cc----EEEEEE--CCEEEEEEC----------CCCEEEEEECCCCccceEECCCC
Confidence 98765443 44322 22 467664 455543322 27889999999999988875444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.51 E-value=0.23 Score=50.25 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=108.2
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-cc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-GF 177 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-~~ 177 (464)
.+++....+|.+.++|+.||+.+...+..+..++.. +.+.+..+.. -....+.... .+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~~~~~~~ 386 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG--YDKHGKPIGI-------------------AAARDGSKPQDAV 386 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE--ECTTSCEEEC-------------------GGGGCTTSCEECS
T ss_pred eeeeeccccceeEEeccccccccccccccccccccc--cccccceeee-------------------eeccccccceEEe
Confidence 678889999999999999999998876655543322 2333333222 0111111100 00
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-----CEeEEEE---eC---CCceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKI---RS---SSHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-----~V~~Vaf---s~---s~d~tIklWd 246 (464)
+..... ..|. ..+|+ |+..++.-...+....++..+..+........ ......+ .| ...+.|.-||
T Consensus 387 pg~~Gg-~~w~-~~a~d-p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD 463 (573)
T d1kb0a2 387 PGPYGA-HNWH-PMSFN-PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (573)
T ss_dssp SCTTCS-SCSS-CCEEE-TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred ecccCC-cccc-ccccC-CCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeC
Confidence 111111 1122 56887 78777777777777767665543321111100 0111111 11 2346899999
Q ss_pred cCCCcEEEEEeeCCcce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc---CCCceEEEEEcCCCcEE
Q 012410 247 IEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLF 318 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h~~~v~sv~Fspdgqll 318 (464)
..||+.+-+.+...... -.++ . .++.+.++..|+.++.+|..||+.|-.++. ....| +.|..||++.
T Consensus 464 ~~tGk~~W~~~~~~p~~gg~ls--t-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQY 534 (573)
T d1kb0a2 464 PVAQKAAWSVEHVSPWNGGTLT--T-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQY 534 (573)
T ss_dssp TTTTEEEEEEEESSSCCCCEEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEE
T ss_pred CCCCceEeeecCCCCCCCceEE--E-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEE
Confidence 99999998887532211 1222 2 357777888999999999999999865432 22334 4456678643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.45 E-value=3 Score=42.15 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=88.6
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeE---------EEEccCCC--eEEE-EeCCCeEEEEECCCCcEEEEccc--CCCce
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKV---------DFIEQFNE--KLLV-KQENENLQILDVRNAELMEVSRT--EFMTP 306 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V---------~F~~~~~~--~lla-~s~D~tIkIWDv~tg~~l~~l~g--h~~~v 306 (464)
.|--.|++||+++-.++...|-++.. +....+++ ..++ ...++.+.++|..+|+++....- ...+.
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~ 358 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence 46667999999999888433333221 11112222 2333 67889999999999998853210 00000
Q ss_pred -------------------------------------EEEEEcCCCcEEEEEe-C-------------------------
Q 012410 307 -------------------------------------SAFIFLYENQLFLTFR-N------------------------- 323 (464)
Q Consensus 307 -------------------------------------~sv~FspdgqllaS~s-D------------------------- 323 (464)
...+|+|+..++.... +
T Consensus 359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence 1235666665543321 1
Q ss_pred --------------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 324 --------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 324 --------------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
++|.-||. +|+++-...--.. .++=.++..|.+++.|+. ||.++-.|.
T Consensus 439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~------~~gg~lsTagglVF~G~~-----------Dg~l~A~Da 501 (596)
T d1w6sa_ 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL-----------DGYLKARDS 501 (596)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEET
T ss_pred ccCcccCcccCCCcceEEEEeCCCCceecccCCCCC------CccceeEecCCEEEEECC-----------CCeEEEEEC
Confidence 47888998 7998754432211 122234556888888875 999999999
Q ss_pred CCCeEEEEEccC
Q 012410 389 LTGKCLAKINAT 400 (464)
Q Consensus 389 ~tG~cl~tl~gh 400 (464)
.||+.|..++--
T Consensus 502 ~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 502 DTGDLLWKFKIP 513 (596)
T ss_dssp TTCCEEEEEECS
T ss_pred CCCcEeeEEECC
Confidence 999999888543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.39 E-value=0.39 Score=48.64 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=55.3
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC---CCceEEEEEcC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE---FMTPSAFIFLY 313 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh---~~~v~sv~Fsp 313 (464)
...+.|.=+|+.||+++-..... .++.+-..+. .++.+.+++.|++++-+|..|||.|-.++.. ...| ++|..
T Consensus 463 ~~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~ 538 (582)
T d1flga_ 463 DHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQ 538 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEE
T ss_pred CCCCeEEEEcCCCCcEEeecCCC-CCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEE
Confidence 45688999999999999988754 3333211222 3567778889999999999999998654432 2334 45678
Q ss_pred CCc-EEEE
Q 012410 314 ENQ-LFLT 320 (464)
Q Consensus 314 dgq-llaS 320 (464)
||+ ++|.
T Consensus 539 ~G~qYv~i 546 (582)
T d1flga_ 539 DGEQYLGV 546 (582)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 885 4443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=1.7 Score=39.09 Aligned_cols=221 Identities=12% Similarity=0.102 Sum_probs=129.0
Q ss_pred EEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce
Q 012410 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (464)
Q Consensus 110 ~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~ 189 (464)
|+-.+..+ .....+-.... -+.+|.|.+.++.|.- ++...+ .|.--++................+.+|.
T Consensus 12 I~~~~l~~-~~~~~~~~~~~-~~~~id~d~~~~~lYw--~D~~~~-------~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 12 VRKMTLDR-SEYTSLIPNLR-NVVALDTEVASNRIYW--SDLSQR-------MICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEETTS-CCCEEEECSCS-SEEEEEEETTTTEEEE--EETTTT-------EEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCC-CcceeeeCCCC-ceEEEEEEeCCCEEEE--EECCCC-------EEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 44455443 33333323233 3678999998887766 233332 3332232211111111111122346778
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~ 257 (464)
.+|++...+++-.+-+..++|.+.++....+...+. .....+|++.|. ....|.--++ +|.-..++-
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~-dGs~~~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCCEEEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc-CCCceeccc
Confidence 999985566666666778899999997655544333 356888998762 2223444444 355455443
Q ss_pred -eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 258 -HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 258 -~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
........+++.+ .+++|... +..++|..-|+....+.... ..+...|.++++. ++.++.+-. ++.|.-.|.
T Consensus 160 ~~~~~~p~gl~iD~-~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 160 TENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp CSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ccccceeeEEEeec-cccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECC
Confidence 2223346777765 35667665 57789999998666554433 3334568888866 678888876 889988887
Q ss_pred CCceEEEeccCCC
Q 012410 332 RGELVTSFEDHLL 344 (464)
Q Consensus 332 ~Ge~l~tl~gH~~ 344 (464)
+|+-++.+.....
T Consensus 238 ~g~~~~~~~~~~~ 250 (266)
T d1ijqa1 238 TGSDVNLLAENLL 250 (266)
T ss_dssp TCCCCEEEECSCS
T ss_pred CCcceEEEEcCCC
Confidence 6877777765544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.38 E-value=0.25 Score=49.44 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=111.3
Q ss_pred cCceEEEEeC--CCCcEEEE-ecCCCcEEEEeCCCCeEEE--Eec-CCCEeEEEEeC------------------C----
Q 012410 186 KWPGFVEFDD--VNGKVLTY-SAQDSIYKVFDLKNYTMLY--SIS-DKHVQEIKIRS------------------S---- 237 (464)
Q Consensus 186 ~~~~~VaFs~--pdGk~LaS-gs~D~tiKlWdl~tg~~l~--tl~-~~~V~~Vafs~------------------s---- 237 (464)
-|| .+.|.+ +||++|-. ...+..|-+=|+++.++.+ +++ ...+..+...+ .
T Consensus 86 HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~ 164 (459)
T d1fwxa2 86 HHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 164 (459)
T ss_dssp CCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred CCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence 455 556642 36887654 4467788888999999966 444 45566655521 0
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC-----------------------------
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN----------------------------- 282 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D----------------------------- 282 (464)
...++-..|.++.++.....-. .....++++++ +..+.+.+++
T Consensus 165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~d-GK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a 242 (459)
T d1fwxa2 165 MEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 242 (459)
T ss_dssp TTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred ccchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCC-CCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence 1145678899999888766521 23356788884 5555556643
Q ss_pred ---------CeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-------Cc-----eE
Q 012410 283 ---------ENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GE-----LV 336 (464)
Q Consensus 283 ---------~tIkIWDv~tg---~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-------Ge-----~l 336 (464)
+-+++-|.+.. ..+.++.. ...|..+.++|||+++..++ +.||-|.|++ ++ ++
T Consensus 243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~ 321 (459)
T d1fwxa2 243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 321 (459)
T ss_dssp HHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred hhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence 23356676542 22222221 13467889999999999888 9999999973 11 11
Q ss_pred -EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 337 -TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 337 -~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
...+--..+ --.+|..+|.--.|--- |..|--||+..
T Consensus 322 ~~e~elglgP------Lht~fd~~g~aytslfi-----------ds~v~kw~~~~ 359 (459)
T d1fwxa2 322 VAEPELGLGP------LHTAFDGRGNAYTSLFL-----------DSQVVKWNIED 359 (459)
T ss_dssp EECCBCCSCE------EEEEECTTSEEEEEETT-----------TTEEEEEEHHH
T ss_pred EeecccCcCc------cccccCCCceEEEEeec-----------cceEEEEecch
Confidence 111111111 24568887754333323 88899999853
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.23 E-value=0.21 Score=49.30 Aligned_cols=59 Identities=5% Similarity=0.086 Sum_probs=43.6
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE--EEec--------CCCEeEEEEeCC--CceeEEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS--------DKHVQEIKIRSS--SHVPLKI 244 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l--~tl~--------~~~V~~Vafs~s--~d~tIkl 244 (464)
+.+|.+++|. |||++|++--..++|++.+.++++.. ..+. ......|||.|+ .+..|.+
T Consensus 26 L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 26 LNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence 6788899997 89999997656789999998887653 3332 145778999985 4444444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.99 E-value=2.5 Score=42.14 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=36.5
Q ss_pred CeEEEEECCCCcEEEEccc--CCC-------ceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 283 ENLQILDVRNAELMEVSRT--EFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~g--h~~-------~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
..|--.|+.||+.+-.++. |.. .+.-+....+|+ .++.+. ++.+-++|. +|+++...
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~ 340 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence 4566779999998754433 221 122233334554 566677 999999998 79987543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.88 E-value=0.74 Score=46.49 Aligned_cols=122 Identities=6% Similarity=-0.002 Sum_probs=69.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEe--C-----CCceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIR--S-----SSHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--~-----s~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
..+|+ |+..++.-...+.....+....... .........+... | ...+.|.-+|.+||+.+-+.......
T Consensus 390 ~~a~d-P~~~~~yv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~ 466 (571)
T d2ad6a1 390 VDSYD-PESRTLYAGLNHICMDWEPFMLPYR--AGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA 466 (571)
T ss_dssp BCEEE-TTTTEEEEEEECEEEEEEECCCCCC--TTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC
T ss_pred cceEC-CCCceEEEecccccccccccccccc--CCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCC
Confidence 57897 7777777666654443332110000 0000011122221 1 24578999999999999887643122
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--c-CCCceEEEEEcCCCcEE
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--T-EFMTPSAFIFLYENQLF 318 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--g-h~~~v~sv~Fspdgqll 318 (464)
.-.+- +. .++.+.+++.|+.++-+|.+|||.+-... + ....| +.|..||++.
T Consensus 467 ~~g~l-~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P--~ty~~dGkqY 521 (571)
T d2ad6a1 467 WGGTL-YT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKGKQY 521 (571)
T ss_dssp CSBCE-EE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEE
T ss_pred Cccee-Ee-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc--eEEEECCEEE
Confidence 21121 11 25777778999999999999999885433 2 22233 5567688653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=2.5 Score=37.82 Aligned_cols=175 Identities=10% Similarity=0.051 Sum_probs=106.1
Q ss_pred cEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCC---cEEEE-EeeCCcceeeEEEEccCCC
Q 012410 209 IYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDG---TVLKV-FYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG---~~l~t-l~~~~~~~~~V~F~~~~~~ 274 (464)
.|+--++.+.+...-+. ...+.+|+|.+. ....|.--++... ....+ +.........+|+-+. ++
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~-~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HS 89 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-TT
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec-cc
Confidence 36666776554433333 345667777542 2233333333211 01111 2222344567777653 46
Q ss_pred eEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe--CCeEEEEeCCCceEEEeccCC-CCcCCC
Q 012410 275 KLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHL-LWHPDC 349 (464)
Q Consensus 275 ~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s--D~TIklWd~~Ge~l~tl~gH~-~~~~~~ 349 (464)
.|... +..++|.+.++....+...+......|.++++.| .|.++.+-. ...|.--+.+|.-..++-... .+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~---- 165 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW---- 165 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC----
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce----
Confidence 66665 5778999999887777766666667899999886 677777754 456766677887666665433 33
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 350 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 350 ~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+.+++.+.++.|.-... ..++|..-|+....+...+.+
T Consensus 166 -p~gl~iD~~~~~lYw~d~----------~~~~I~~~~~dG~~~~~~~~~ 204 (266)
T d1ijqa1 166 -PNGITLDLLSGRLYWVDS----------KLHSISSIDVNGGNRKTILED 204 (266)
T ss_dssp -EEEEEEETTTTEEEEEET----------TTTEEEEEETTSCSCEEEEEC
T ss_pred -eeEEEeeccccEEEEecC----------CcCEEEEEECCCCCEEEEEeC
Confidence 578999998887765432 368888888855555444444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.89 E-value=4.1 Score=38.67 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=119.4
Q ss_pred eEEEEEEeeCCCEEEE-EEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC-
Q 012410 131 VIRSLFYNKNNDSLIT-VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~s-vSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~- 208 (464)
.+-.+..||||+.++. .|.-|++- .++++.|+.+|+.... .+.. ...++++|+ +|++.|.+...|.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~------~~l~v~Dl~tg~~~~~--~i~~---~~~~~~~W~-~D~~~~~Y~~~~~~ 193 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDW------VTIKFMKVDGAKELPD--VLER---VKFSCMAWT-HDGKGMFYNAYPQQ 193 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSC------EEEEEEETTTTEEEEE--EEEE---ECSCCEEEC-TTSSEEEEEECCCC
T ss_pred eecceEecCCCCEEEEEeccccCch------heeEEeccCcceeccc--cccc---ccccceEEc-CCCCEEEEEEeccc
Confidence 3456678999998884 44445555 8999999999986421 1111 112378997 8999998765442
Q ss_pred ---------------cEEEEeCCCCe----EEEEecCC--CEeEEEEeCCCc-----------eeEEEE--EcCCCcE--
Q 012410 209 ---------------IYKVFDLKNYT----MLYSISDK--HVQEIKIRSSSH-----------VPLKIL--SIEDGTV-- 252 (464)
Q Consensus 209 ---------------tiKlWdl~tg~----~l~tl~~~--~V~~Vafs~s~d-----------~tIklW--di~tG~~-- 252 (464)
.+.+|.+-+.. +++.-.++ .+..+..+++.. ....+| ++.+...
T Consensus 194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence 46677776653 33433332 344555554321 122222 2221100
Q ss_pred -----EEEEeeCCcceeeEEEEccCCCeEEE-Ee---CCCeEEEEECCCCc---EEEEcccCCCceEEEEEcCC-CcEEE
Q 012410 253 -----LKVFYHLLHRNKKVDFIEQFNEKLLV-KQ---ENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE-NQLFL 319 (464)
Q Consensus 253 -----l~tl~~~~~~~~~V~F~~~~~~~lla-~s---~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~Fspd-gqlla 319 (464)
...+.. .....+.+....++.+.+ .. .++.|-.-++.+.. ...++..+...+..-.++.. +.+++
T Consensus 274 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl 351 (430)
T d1qfma1 274 TGILKWVKLID--NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (430)
T ss_dssp CSSCCCEEEEC--SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred ccccceeEeec--ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEE
Confidence 000100 001112222223444444 22 34555555655533 12233344344544445544 45556
Q ss_pred EEe-CC--eEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 320 TFR-NR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 320 S~s-D~--TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+-. |+ .|++++.. |+....+..-.. .|..+...++.. +.++++. --.=.++--+|+.||+.
T Consensus 352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-----sv~~~~~~~~~~~~~~~~ss--------~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 352 CYLHDVKNTLQLHDLATGALLKIFPLEVG-----SVVGYSGQKKDTEIFYQFTS--------FLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSS-----EEEEEECCTTCSEEEEEEEC--------SSCCCEEEEEETTSSSC
T ss_pred EEEcCCEeEEEEEECCCCcEEEecCCCCc-----eEeeccCCCCCCEEEEEEcC--------CCCCCeEEEEECCCCCc
Confidence 666 65 68889985 555443322221 144444445544 3444431 01126788899998853
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=3.1 Score=37.27 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=126.5
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
...+..|+|.+.++.|.- ++...+ .|..-++..+.. . .+.. .-+..|..+|++..++++-.+....+
T Consensus 35 ~~~~~~ld~D~~~~~iyw--sd~~~~-------~I~~~~l~g~~~-~--~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~ 101 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYW--TDISEP-------SIGRASLHGGEP-T--TIIR-QDLGSPEGIALDHLGRTIFWTDSQLD 101 (263)
T ss_dssp EEEEEEEEEETTTTEEEE--EETTTT-------EEEEEESSSCCC-E--EEEC-TTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred CCcEEEEEEEeCCCEEEE--EECCCC-------eEEEEEcccCCc-E--EEEE-eccccccEEEEeccCCeEEEeccCCC
Confidence 344677888877777665 223332 443334332221 1 1111 12356779999855665555666788
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCCC---------ceeEEEEEc-CCCcEEEEEe-eCCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSSS---------HVPLKILSI-EDGTVLKVFY-HLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~---------d~tIklWdi-~tG~~l~tl~-~~~~~~~~V~F~~~~~~~ 275 (464)
.|.+.++....+...+. -...++|++.|.. ...-+|+-. .+|+-...+. .....-..+++.+. +++
T Consensus 102 ~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~-~~~ 180 (263)
T d1npea_ 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-SSQ 180 (263)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETT-TTE
T ss_pred EEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeec-CcE
Confidence 99999987555432222 2568899997731 112244422 1354333433 22233367777664 466
Q ss_pred EEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 276 LLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 276 lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
|... ...++|..-|+..+.+..++.+- ..|.++++. ++.++.|-. +++|..-|. +|+.++++..+.... ..
T Consensus 181 lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~----~~ 254 (263)
T d1npea_ 181 LCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR----LY 254 (263)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC----CC
T ss_pred EEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCC----cc
Confidence 6565 47789999998766655555543 457888874 788888877 889999998 688887765443321 34
Q ss_pred EEEECCCC
Q 012410 353 NIYITSDQ 360 (464)
Q Consensus 353 svafSpDg 360 (464)
.|++.+++
T Consensus 255 gi~v~~~~ 262 (263)
T d1npea_ 255 GITIALSQ 262 (263)
T ss_dssp CEEEECSC
T ss_pred eEEEeCCC
Confidence 66666654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.82 E-value=3.9 Score=38.26 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=48.9
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
.+-.+|....+++.... .....+..++++||+++|..+. .++|+.++++ +++.....-+..-. .-++.+.+
T Consensus 186 ~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~----pDNi~~d~ 260 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL----VDNISVDP 260 (340)
T ss_dssp CCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE----EEEEEECT
T ss_pred CceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCC----CCccEEec
Confidence 35567776666664443 3446799999999998765554 8899999984 33322221122221 34788876
Q ss_pred -CCCEEEEE
Q 012410 359 -DQDLIISY 366 (464)
Q Consensus 359 -Dg~~LaSg 366 (464)
+|.+.+.+
T Consensus 261 ~~g~lwva~ 269 (340)
T d1v04a_ 261 VTGDLWVGC 269 (340)
T ss_dssp TTCCEEEEE
T ss_pred CCCEEEEEE
Confidence 56666544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.16 E-value=2.1 Score=42.41 Aligned_cols=260 Identities=10% Similarity=0.026 Sum_probs=135.2
Q ss_pred EEeccceeehhccC-CeEEeeecccccEeeEeecCCCceEEEEEEeeCCC--EEEEEEeecC---CCCcccce-----ee
Q 012410 94 IVAARDIVFALAHS-GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYAS---DNFSSLKC-----RS 162 (464)
Q Consensus 94 ~~~ag~~l~~l~~~-g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~--~l~svSa~~s---ddfs~L~~-----~t 162 (464)
+-.-|.+|++-... ..+..=|..+-+.-..+..-....+..++.+++++ +++..+-|.- .|-..|.- .+
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence 33447777776643 35555566666665544333444567776665444 4444332210 00000110 22
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCC-EeEEEEeC-----
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH-VQEIKIRS----- 236 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~-V~~Vafs~----- 236 (464)
+...|..+.+. .++-.+-+.+..++|+ |||+++.+.+.+.. .+.-+.....+. -+-++|..
T Consensus 175 ~t~ID~~tm~V-----~~QV~V~g~ld~~~~s-~dGK~af~TsyNSE-------~g~~l~e~ta~e~D~i~V~n~~rie~ 241 (459)
T d1fwxa2 175 FTAVDADKWEV-----AWQVLVSGNLDNCDAD-YEGKWAFSTSYNSE-------KGMTLPEMTAAEMDHIVVFNIAEIEK 241 (459)
T ss_dssp EEEEETTTTEE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTT-------CCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred EEEEecCCceE-----EEEeeeCCChhccccC-CCCCEEEEEecccc-------CCcchhhcccccceEEEEechHHhHH
Confidence 23344444443 2222222445579997 89999988776432 121111111122 23334421
Q ss_pred ----CCc---eeEEEEEcCC---CcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCC-----------c
Q 012410 237 ----SSH---VPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNA-----------E 294 (464)
Q Consensus 237 ----s~d---~tIklWdi~t---G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg-----------~ 294 (464)
... ..+++-|..+ ...++++.-. ..-..|+++| ++.++.+++ .+.|+-+.|++.- .
T Consensus 242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~ 319 (459)
T d1fwxa2 242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 319 (459)
T ss_dssp HHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred hhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence 111 2357777654 2345554411 2236788888 567777765 9999999998631 1
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C----------ceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 295 LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 295 ~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G----------e~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
++..-....-.|---+|..+|....|-- |.+|--||+. . ..+..+.-|-+.-..+....-...|||++
T Consensus 320 ~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~ 399 (459)
T d1fwxa2 320 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 399 (459)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred cEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCE
Confidence 2211111223466678999997766666 9999999962 2 34555544333100000000124899999
Q ss_pred EEEEec
Q 012410 363 IISYCK 368 (464)
Q Consensus 363 LaSgs~ 368 (464)
|+|.++
T Consensus 400 l~~~nk 405 (459)
T d1fwxa2 400 LVCLSK 405 (459)
T ss_dssp EEEEES
T ss_pred EEEecc
Confidence 999997
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.65 E-value=9.4 Score=38.24 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=94.0
Q ss_pred EeCCCceeEEEEEcCCCcEEEEEee-CCc---ce-eeEEEEccCCCeEEEEe------CCCeEEEEECCCCcEEEEcccC
Q 012410 234 IRSSSHVPLKILSIEDGTVLKVFYH-LLH---RN-KKVDFIEQFNEKLLVKQ------ENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 234 fs~s~d~tIklWdi~tG~~l~tl~~-~~~---~~-~~V~F~~~~~~~lla~s------~D~tIkIWDv~tg~~l~~l~gh 302 (464)
|-.+.|..|--.|.+||+.+..+.. ..+ .+ -...+ .+++++++. ..+.|+-+|+.||+++=.+...
T Consensus 125 ~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~ 201 (596)
T d1w6sa_ 125 LKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (596)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEeCCCCeEeeccccCceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence 3345677777789999999998862 111 11 22222 147888864 2489999999999998643211
Q ss_pred -------------------------------------CCceE-EEEEcCCCcEEEEEe-CC----------------eEE
Q 012410 303 -------------------------------------FMTPS-AFIFLYENQLFLTFR-NR----------------TVA 327 (464)
Q Consensus 303 -------------------------------------~~~v~-sv~FspdgqllaS~s-D~----------------TIk 327 (464)
...+| ..++.|+..++--+. +. .|-
T Consensus 202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv 281 (596)
T d1w6sa_ 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (596)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence 01122 234556666554432 22 244
Q ss_pred EEeC-CCceEEEec--cCCCCcCCCCeeEEE---ECCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 328 VWNF-RGELVTSFE--DHLLWHPDCNTNNIY---ITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 328 lWd~-~Ge~l~tl~--gH~~~~~~~~v~sva---fSpDg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
--|. +||++-.++ .|..|..+|.-.-+. ...||+ .++...+ +|.+.++|-.||+.+...+
T Consensus 282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k-----------~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR-----------NGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT-----------TSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccceeccccCCccccceeeeeccccccccccceecccc-----------ccceeeecCCCCceeeecc
Confidence 5577 799877655 677787776422221 234554 5676766 8999999999999986543
|
| >d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 domain: Glucosylceramidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.64 Score=39.26 Aligned_cols=122 Identities=7% Similarity=-0.086 Sum_probs=63.5
Q ss_pred eecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee-------eEEEEEeccCCCCCccc-ceeecc
Q 012410 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR-------STKIEYIRRGKPDSGFA-LFESES 184 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~-------ti~l~~i~~G~~~~~~~-l~~~~~ 184 (464)
-+...|.-+|-+|..+.+.+...-+-+.|+...-.|.-++..|.-..+. +.....|..-+-.++.. +....-
T Consensus 7 ~~~~~~~~VCvCnat~cD~~~~~~~~~~g~f~vy~SsksG~R~~~~~g~f~~~~~~~~~~iti~~~~~yQ~~~iG~~~s~ 86 (143)
T d2nt0a1 7 KSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKQRVGLVASQ 86 (143)
T ss_dssp ECCSSSSCEEEECSSCCCBCCCCCCCCTTEEEEEEEETTSCCSEEEEEECBSSCCCCSEEEEEEEEEEEEEEEEEEEESS
T ss_pred cccCCCCEEEEEeCCcccccCCCCcCCCCeEEEEEEcCCcceEEEEEeeeeecCCCCceEEEECcccceEEEEEeeeecC
Confidence 3335566677777777777777777777766655553332222111110 00000110000000000 000000
Q ss_pred ccCceEEEEeCCCCcEEEE----ecCCCcEEEEeCCCCeEEEEecCCCEeEEEE
Q 012410 185 LKWPGFVEFDDVNGKVLTY----SAQDSIYKVFDLKNYTMLYSISDKHVQEIKI 234 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaS----gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vaf 234 (464)
-.-...|||-.|||++++- +..+..+.|+|...|.+-.+|+.+.|..+.+
T Consensus 87 ~~~L~~vAF~nPDgs~vlVv~N~s~~~~~~~i~~~~~~~~~~~lpa~Si~T~vw 140 (143)
T d2nt0a1 87 KNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLW 140 (143)
T ss_dssp CCSEEEEEEECTTSCEEEEEEECSSSCEEEEEEETTTEEEEEEECTTEEEEEEE
T ss_pred cCcceEEEEECCCCCEEEEEEeCCCCCeEEEEEeCCCCEEEEEeCCCEEEEEEE
Confidence 1112279998899987653 4567788888877777777888777776655
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.10 E-value=1.3 Score=42.42 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=54.0
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C----------------CeEEEEeC-CC--ceEEEe
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----------------RTVAVWNF-RG--ELVTSF 339 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D----------------~TIklWd~-~G--e~l~tl 339 (464)
++--+|++.|+.||+.+....... ...+++|++|++.|.-.. | ..|.+|.+ ++ +-+..+
T Consensus 148 ~e~~~l~v~Dl~tg~~~~~~i~~~-~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~ 226 (430)
T d1qfma1 148 SDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (430)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred CchheeEEeccCcceecccccccc-cccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccc
Confidence 355789999999999876322111 124678999999886543 3 25777777 43 333444
Q ss_pred ccC--CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 340 EDH--LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 340 ~gH--~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+.. ..+ +..+..|+||++|+...
T Consensus 227 ~e~d~~~~-----~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 227 EFPDEPKW-----MGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCTTCTTC-----EEEEEECTTSCEEEEEE
T ss_pred ccccCCce-----EEeeeccCCcceeeEEe
Confidence 443 334 56788999999987544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=85.61 E-value=15 Score=34.62 Aligned_cols=176 Identities=13% Similarity=0.203 Sum_probs=103.2
Q ss_pred CCcEEEEeCCCCeEEEEecCCCEeEEEEe----------------CC--CceeEEEEEcC-CCcEEEEEeeC-------C
Q 012410 207 DSIYKVFDLKNYTMLYSISDKHVQEIKIR----------------SS--SHVPLKILSIE-DGTVLKVFYHL-------L 260 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~~~V~~Vafs----------------~s--~d~tIklWdi~-tG~~l~tl~~~-------~ 260 (464)
+.=+.++|| +|+.+..+..+.+..|... .- .-.+|.+|.+. .+..+..+... .
T Consensus 49 ~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~ 127 (353)
T d1h6la_ 49 KSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAI 127 (353)
T ss_dssp TSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSS
T ss_pred cCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccccccc
Confidence 334889998 4888877765444444432 11 23478889884 34455555421 1
Q ss_pred cceeeEEE--EccCCCeEEE-EeCCCeEEEEEC---CCCc----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 261 HRNKKVDF--IEQFNEKLLV-KQENENLQILDV---RNAE----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 261 ~~~~~V~F--~~~~~~~lla-~s~D~tIkIWDv---~tg~----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
..+..+++ .+.++...+. ...++.++.|.+ .++. +++.+.-- ..+..+++.++.+.|.-+- +.-|...
T Consensus 128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~EGCVvDde~~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTEGMAADDEYGSLYIAEEDEAIWKF 206 (353)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-CccceEEEeCCCCcEEEecCccceEEE
Confidence 23567777 4544443333 678899988765 3343 44455433 3688999999887777777 6544333
Q ss_pred eCC------CceEEEecc-CCCCcCCCCeeEEE--ECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEc
Q 012410 330 NFR------GELVTSFED-HLLWHPDCNTNNIY--ITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 398 (464)
Q Consensus 330 d~~------Ge~l~tl~g-H~~~~~~~~v~sva--fSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~ 398 (464)
+.+ +.++-...+ |.. .| +..|+ -.+||+ +|+..|. .|.+..|+|.++ .+-+..|+
T Consensus 207 ~a~~~~~~~~~~i~~~~g~~l~--~D--~EGlaiy~~~~~~GylivSsQ----------G~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 207 SAEPDGGSNGTVIDRADGRHLT--PD--IEGLTIYYAADGKGYLLASSQ----------GNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp ESSTTSCSCCEEEEECSSSSCC--SC--EEEEEEEECGGGCEEEEEEEG----------GGTEEEEEESSTTCCEEEEEE
T ss_pred EeccCCCccceeeecccCcccc--CC--ccccEEEEcCCCCeEEEEEcC----------CCCeEEEEecCCCccccceEE
Confidence 331 233333333 322 22 55554 455555 5555554 389999999877 47777765
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| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.83 E-value=18 Score=33.97 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=104.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL-- 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~-- 259 (464)
+.-. +|+.++||==+ -.++.++|+++-+.|++.. .+.|-=-++ ++. .+..|.-|+++. -+..+.|.-+
T Consensus 67 sAIM-hP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~ 144 (327)
T d1utca2 67 SAIM-NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS 144 (327)
T ss_dssp EEEE-CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred hhhc-CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhccc
Confidence 3444 48999998766 4589999999999998765 333322222 221 344577788742 2456666521
Q ss_pred CcceeeEEEEccCCCeEEE--E--eCC----CeEEEEECCCCcEEEEcccCCCceEEEEEc--CCCcEEEEEe-----CC
Q 012410 260 LHRNKKVDFIEQFNEKLLV--K--QEN----ENLQILDVRNAELMEVSRTEFMTPSAFIFL--YENQLFLTFR-----NR 324 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla--~--s~D----~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs--pdgqllaS~s-----D~ 324 (464)
+...-=+.+..+.+++.++ | +.| |.++|+.++. +.-+.+.||...--.+.+. ++-..|.++. .+
T Consensus 145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~ 223 (327)
T d1utca2 145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 223 (327)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence 2222333443333344322 2 333 7789999654 4567888884322222111 2222233332 23
Q ss_pred eEEEEeC-CC-ceEEE-------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 325 TVAVWNF-RG-ELVTS-------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 325 TIklWd~-~G-e~l~t-------l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
.+.|-++ +. +--.. +.--.....|..| ++.+|+--.+|.--.+ -|.|.|.|++||.|+.
T Consensus 224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv-amqvs~kygiiyviTK-----------~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE-EEEEETTTTEEEEEET-----------TSEEEEEETTTCCEEE
T ss_pred EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE-EEEeeccCCEEEEEec-----------CcEEEEEEcccccEEE
Confidence 5666665 21 11111 1100000111112 3455555555555555 7999999999999998
Q ss_pred EEccCC
Q 012410 396 KINATN 401 (464)
Q Consensus 396 tl~gh~ 401 (464)
.=+=.+
T Consensus 292 ~nRIs~ 297 (327)
T d1utca2 292 MNRISG 297 (327)
T ss_dssp EEECCS
T ss_pred EeecCC
Confidence 654444
|